BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.753_1 (1033 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|188585188|ref|YP_001916733.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349875|gb|ACB84145.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1134 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 410/1036 (39%), Positives = 614/1036 (59%), Gaps = 28/1036 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL HS YSLL+G +N ++ K Q PA+A+TD ++ A+EF ++A Sbjct: 1 MPKP--FVHLHTHSQYSLLDGKCRINELVQKAKEYQMPALALTDHGVMYGAVEFYKQAKE 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+GC++ + + +VLL GY+ L++LVS + + Sbjct: 59 AGIKPILGCEVYVAPRGRTVKDPVKDKHQ---YHLVLLAENQTGYKNLMKLVSLAF-KEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L+ +G+I L+ +G I +VA+ R K +FG + Y Sbjct: 115 FYYKPRVDYELLERYH-DGIIALSACLAGEIPTLILQGQYEVAKNRADRLKSIFGQNNFY 173 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ + ++Q++ ++ LVATN+ +L+ ++ HDVL+ + + Sbjct: 174 LELQDHGLTEEQQVNTHLLQISRELDIGLVATNDIHYLTNQESSIHDVLLCIQTGKHLDD 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +DR + + + Y K+ EM +IF D P A+ENT+ IA RC L LP F E Sbjct: 234 QDRMKFPSNEFYFKDGDEMSNIFKDFPGAIENTLAIADRCQVELDFDTLHLPEFRVPEGY 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E + LR GL R Q ++RL++EL+VI++M ++ YFLIV Sbjct: 294 D----ENSYLRKLCQKGLLERYEQ-------VTTKIQERLEYELDVISKMGYASYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A +NNI VGPGRGS AGS+ AY+L IT++DP+R+ LLFERFLNP+R++MPD DID Sbjct: 343 DFVRFAHENNILVGPGRGSAAGSLVAYSLRITNVDPIRYGLLFERFLNPERVNMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + R+ VI+YV KYG++ VA IITFG++QA+AA+RDVGR + M Y VDR+ K+IP+ Sbjct: 403 FCYENRERVIQYVVEKYGNDNVAHIITFGTMQARAAVRDVGRVMGMNYGDVDRVAKMIPH 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A+ + F++ DP V L+ IS+ +EGL RHAS HAAGIVI PL++ Sbjct: 463 DPGMTID-KALELNKDFKKLYDEDPQVRELINISKSIEGLPRHASIHAAGIVISKAPLTE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 VP+ + D VTQF M +E+ GL+K DFLGLKTLT++ ++++ + Q VDL+ Sbjct: 522 YVPLQCN--DDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRAVEIVNQTQAETVDLNK 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T+ L+ TLG+FQLESSGMR L ++P EDIIA +LYRPGP++ I Sbjct: 580 IPLDDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDIIATSALYRPGPMEQIPT 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+G+ +I H + P+L+ET G+I+YQEQ+MQ+A ++G+SL EAD+LRRA+GKK Sbjct: 640 FIESKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAGFSLGEADLLRRAIGKK 699 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K + +QKE+F+ G G K ++++L+ KFADYGFNKSH+AAYA I+YQ+A++K Sbjct: 700 KKNILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKSHSAAYAYIAYQSAYLK 759 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839 +YP +F+AA +T M++ +K+ + +AR+ I+I+PP VN VDF V D RI + L Sbjct: 760 ANYPTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNESLVDFTAVSDFRIRFGL 819 Query: 840 AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+K VG I+ + F SL+DFCSR D + N++ +ESL+ GA D F ++R Sbjct: 820 AAVKNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNKKAIESLIKVGAFDAFEHNR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQR 957 Q+LQ LD K AQ +F GT + + + E+ Sbjct: 880 KQMLQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGTNKIDLDYPDVEEFTLNELLQMEKE 939 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LGF+ SGHPLD YK L + E G I++A + ++ T+KG ++ + Sbjct: 940 LLGFFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVAGICQDVKEIITKKGEQMAF 999 Query: 1018 VTFSEPAKEYEANFFP 1033 T + + E FP Sbjct: 1000 CTLEDQSGTVELVIFP 1015 >gi|118580484|ref|YP_901734.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379] gi|118503194|gb|ABK99676.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379] Length = 1184 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 430/1042 (41%), Positives = 630/1042 (60%), Gaps = 18/1042 (1%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 +Q+ ++P FVHL VH+ YSLL+GA+ L +++ K A PA+AITD N+F A+EF K Sbjct: 7 SQHPPQAP-FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLK 65 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AGI+P+IGC++ I + ++LL +GY+ L L S Y Sbjct: 66 CKKAGIKPLIGCEVYIAPDSRFSR-ESTRGISEAAYHLILLCENMQGYRNLSYLTSAGY- 123 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI LQE +EGLI L+ G + F + A + + +LF DR Sbjct: 124 KEGFYYRPRIDRELLQE-HSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDR 182 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ + ++ +++++A T +LPLVATN+ +L+ ED AH+VL+ + + Sbjct: 183 YYIELQENTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTM 242 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S + + + Y+K+ EMV+ F PEA+ NT++IA RC L + Sbjct: 243 SDPSHMKFSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEY--HFPHF 300 Query: 300 CDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 K ++ L AV GL+ R+ A+ Q Y +RL EL I M+F Sbjct: 301 DPPAGKNHDDMLEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIREMQFPA 360 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+DFI WAK IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R++M Sbjct: 361 YFLIVSDFITWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERITM 420 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DFCQDRR+EVI+YV KYG ERV QIITFG+++AKA +RDVGRAL M Y VDR+ Sbjct: 421 PDIDVDFCQDRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVDRI 480 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP+D + +A+ + + E DP V LL+ + LEGL RHASTHAAG+V+ Sbjct: 481 AKLIPDDLKMTL-AKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVVVA 539 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 R L + +P+Y+D ++ TQ++MK++E GL+KFDFLGLK LT+++ ++ + + Sbjct: 540 PRQLEEFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGKDP 599 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ + DD E+Y L+++ T GIFQLESSGM++ L ++P C ED+IA +LYRPGP Sbjct: 600 DFDITRLRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGP 659 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + +V + RK+G++K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+ Sbjct: 660 LGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGRADL 719 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK M K+KE F+ GA GI A IF+ +AKFA+YGFNKSH+AAYA+I Sbjct: 720 LRRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALI 779 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K+HYPVEFLAA +T +MD+ +K+ K D R+ I+++PP VN + F V Sbjct: 780 AYQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTVVG 839 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 N + + L A+KGVGT I+EA D PF + DFC RVD ++ N++VLE+L+ GA D Sbjct: 840 NSMRFGLGAVKGVGTGAVEAILEARQDGPFKDVYDFCERVDMRRSNKKVLEALIKCGAFD 899 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSV 950 R +++ L+ + Q +++ R + ++F ++ + + L + Sbjct: 900 STNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVPEWHDKE 959 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LGF +GHPLD Y ++++ G IR+ +V S ++ T+ Sbjct: 960 KLALEKEALGFLITGHPLDRYVDDIKRLNCVEISRLTEQADGGEIRVCGIVSSLKEITTK 1019 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 KG R+G+VT + E F Sbjct: 1020 KGDRMGFVTIEDLTGSVEVTVF 1041 >gi|78222430|ref|YP_384177.1| DNA polymerase III subunit alpha [Geobacter metallireducens GS-15] gi|78193685|gb|ABB31452.1| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15] Length = 1155 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 418/1034 (40%), Positives = 613/1034 (59%), Gaps = 14/1034 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ L +++ K PA+AITD +F A+EF K G++P Sbjct: 2 SFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ I +G ++LL GY+ L +LVS + + Sbjct: 62 IIGSEVYIAPGSRFVKEVKGGEA-GAGYHLLLLCENMTGYRNLSKLVSVGF-KEGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + +EGLI L+ G + + + A + LF DR Y+ LQ + Sbjct: 120 RIDKEVLAQY-SEGLICLSACLKGEVAYLCERDRMEEAIGVARWYADLFPDRYYIELQEN 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++++A LPLVATN+ +L+ ED AH+VL+ + ++ R R Sbjct: 179 GLAEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSARMRF 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + Y+K EM + F PEA+ NTV+IA RC+ P+F + + Sbjct: 239 STDEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPPVGQTLDQML 298 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R L+ + Q Y +RL EL+ I +M F GYFLIVADFI WA Sbjct: 299 EDAARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIVADFINWA 358 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGS AGS+ AY++ ITD+DPL ++LLFERFLNP+R+SMPD D+DFCQDRR Sbjct: 359 KDHGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDVDFCQDRR 418 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV KYG ++V QIITFG++ A+A +RDVGRAL M Y VD++ KL+P + Sbjct: 419 EEVIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVPEVLGIKL 478 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 IA + R +EA AD V LLEI +LEGL RHASTHAAG+V+ + L + P+Y+ Sbjct: 479 KDA-IAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVLEEFCPVYK 537 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + + D++ + DD Sbjct: 538 DQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDIAALRDDDR 597 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +Y L++ T G+FQLESSGM+ L ++P C ED+IA +LYRPGP+ + + + +R Sbjct: 598 ASYDLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSGMVDDFIDR 657 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G++K+V P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK E Sbjct: 658 KHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRAMGKKDPAE 717 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ++ F+ GA G+ A IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K HYP Sbjct: 718 MAKQRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYP 777 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAA +T +M N +K+ K D R+ I+I+PP +N + F+V N I + L A+K Sbjct: 778 VEFLAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIRFGLGAVKN 837 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG I+EA + F L DFC RVD K+N+RV+ESLV GA D G R QL+ + Sbjct: 838 VGEGAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGGRRSQLMSA 897 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENEQRVL 959 L++ Q +++ R + ++F E+ G K+ L + ++ E+ L Sbjct: 898 LEDAMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLKLGLEKEAL 957 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ +GHPL Y+ +++ + ++L +V S ++ T+KG R+ + T Sbjct: 958 GFFITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKKGDRMAFAT 1017 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 1018 LEDLLGSVEVVVFP 1031 >gi|169831212|ref|YP_001717194.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis audaxviator MP104C] gi|169638056|gb|ACA59562.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis audaxviator MP104C] Length = 1075 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 402/1037 (38%), Positives = 595/1037 (57%), Gaps = 31/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YSLL+GA + +++ + A PA+AITD +F +EF + AG++P Sbjct: 3 DFVHLHTHTEYSLLDGAARIKDLVRRAAEFGMPALAITDHGTMFGVVEFYKACRNAGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + + + +VLL GY+ L+ LVS + + Sbjct: 63 VIGCEVYVAPRTRHDRQSG---IDDKLAHLVLLAENERGYRNLLRLVSLSFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L EGLI L+ +G I A + ++ LFG Y+ LQ H Sbjct: 119 RIDREILA-THREGLIALSACLAGEIPELILAGKPDRALETAAEYRDLFGKNFYLELQDH 177 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +V + + LVATN+ ++ E E D+L+ + V R R Sbjct: 178 GLPGQSVVNRGLVDIGKRLGIELVATNDVHYVEREQAENQDILLCIQTGKTVHDAGRLRF 237 Query: 249 TPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D + EM +F++LP AL NT IA RC+ L LP + + Sbjct: 238 EGDQFYFKSGGEMARLFAELPAALANTRLIAERCNLTLDFETLHLPEYRVP----PNYDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L GL + D R+RLD+EL VIA MK+S YFLIV DFI++A Sbjct: 294 DTYLAELCHQGLAR-------RYSPVSDDIRRRLDYELRVIAEMKYSSYFLIVWDFIRFA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I VGPGRGS AGS+ AY+L IT+IDPL + LLFERFLNP+R+S+PD D DFC +RR Sbjct: 347 REKGILVGPGRGSAAGSLVAYSLGITNIDPLAYGLLFERFLNPERISLPDIDSDFCFERR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+AA+RDVGRAL +PY++VDR+ KLIP +P + Sbjct: 407 GEVIDYVFEKYGRDCVAQIITFGTMAARAAVRDVGRALGLPYAEVDRIAKLIPGEPGMSI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ E D +V ++LE ++ LEG+ RHAS HAAG+VI L+ VP+YR Sbjct: 467 E-KALERSPELAELYERDENVRKVLEAARALEGMPRHASIHAAGVVIAKEKLTNYVPLYR 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 + TQF+M+ IE+ GL+K D LGL+TLT++ +++ RG K+++ IP DD Sbjct: 526 TS-DGVVATQFSMEAIEELGLLKMDLLGLRTLTVIGDTVELIRRHRGQKLEMETIPLDDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 TY LL T G+FQLESSGMR L ++P+ ED+IALV+LYRPGP+ + + + R Sbjct: 585 ATYDLLGRGDTAGVFQLESSGMRSILRELRPEVFEDVIALVALYRPGPLGSRMVEDFIKR 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK ++ +HP + P+LK+T GVI+YQEQVM+IA L+G+SL EAD+LRRAMGKK E Sbjct: 645 KHGKTEVQYLHPKLRPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +++F+ GA+ +G+ +A IF+L+A FA YGFNKSH+AAYA+I+YQTA++K +YP Sbjct: 705 IAGLRDQFLEGATAHGVDPAVAGQIFDLMAYFAGYGFNKSHSAAYALIAYQTAYLKANYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 +E++AA +T D+ EK+ + ++ R+ I+++PP VN DF V ++I + LA ++ Sbjct: 765 IEYMAALLTSVRDSPEKVSSYVEECRRLGIEVLPPDVNESRKDFTVVGDKIRFGLAGVRN 824 Query: 845 VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++E + PF SL DFCSR+D K +N+R++ESL+ AGA G+ R QLL Sbjct: 825 VGEAAVNAVIETRERNGPFRSLPDFCSRLDGKVVNKRMVESLIRAGAFSSLGFRRTQLLA 884 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEKFSVENSSVRFENEQ 956 +D ++Q ++K + + ++F + +I + + E+ Sbjct: 885 VMDEALSFSQRLQKEKESGQLSLFGDWGDFGGEGTAAAAPEIVVPHLAEFERHEILAMEK 944 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +LG Y SGHPL +K LR++ E G + L +VV + TRKG + Sbjct: 945 EMLGLYLSGHPLQEFKDTLRRLTTVNAVEIPELNPGQQVILGGLVVGLKTITTRKGEPMC 1004 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ + E FP Sbjct: 1005 FLNLEDLTSRAEIVIFP 1021 >gi|147678555|ref|YP_001212770.1| DNA polymerase III DnaE [Pelotomaculum thermopropionicum SI] gi|146274652|dbj|BAF60401.1| DNA polymerase III, alpha subunit [Pelotomaculum thermopropionicum SI] Length = 1196 Score = 859 bits (2220), Expect = 0.0, Method: Composition-based stats. Identities = 399/1031 (38%), Positives = 604/1031 (58%), Gaps = 26/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+GA +N+ + + + Q PA+AITD +F ++F + AGI+P+ Sbjct: 15 FVHLHLHSEYSLLDGAARINDAVKRASEMQMPALAITDHGVMFGTVDFYKACKKAGIKPV 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + T + + +VLL EGY+ L+ LVS ++ R Sbjct: 75 LGCEVYVAPRSMDDRTPK---IDDNLSHLVLLAENEEGYRNLLNLVSMAFIR-GFYYKPR 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L E + GLI L+G +G + ++ A + ++ +FG + ++ LQ H Sbjct: 131 VDKELLSE-HSRGLIALSGCIAGEVSARILAGENEKARQAAGDYRDIFGPENFFLELQDH 189 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++ +PLV TN+ ++ D E DVL+A+ V R + Sbjct: 190 GFAEQRKVNREMLKIHKEMNIPLVVTNDVHYVRRGDAETQDVLLAIQTGKSVDDPGRMKF 249 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM +F +L AL NTVEIA RC+ ++ LP + E D Sbjct: 250 QSEELYLKSPEEMNLLFGELSGALRNTVEIAGRCNVEIEFGKYYLPHYPVPEGYD----A 305 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L G G + ++RL++EL VI +M +S YFLIV DFI +A Sbjct: 306 DTYLAELCYQGARRI-------YGELSDGVKKRLEYELGVIKQMGYSAYFLIVWDFIHYA 358 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N IPVGPGRGS AGS+ AY+L IT IDPL++ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 359 RQNGIPVGPGRGSAAGSLVAYSLGITSIDPLKYGLLFERFLNPERVSMPDIDVDFCFERR 418 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 E+I YV +YG +RVAQIITFG++ A+AA+RDVGRAL MPY +VDR+ KL+P + + Sbjct: 419 GEIIDYVVRRYGADRVAQIITFGTMAARAAIRDVGRALNMPYGEVDRVAKLVPMELHMTI 478 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + RE P V +L++ + LEG+ RHASTHAAG+VI PL+ +P+Y+ Sbjct: 479 E-KALNESPELRELYDQRPEVRKLIDTAAALEGMPRHASTHAAGVVITPEPLTNYLPLYK 537 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 TQF M +E+ GL+K D LGL+TLT++ +L + + + D+ IP DD Sbjct: 538 A-TDGPVTTQFAMGTVEELGLLKMDLLGLRTLTVISDALRLIKESTGEELDIERIPVDDQ 596 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +TY +L T G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + + + Sbjct: 597 KTYQMLARGETAGVFQLESSGMRSILRDLRPEVFEDIVALVALYRPGPLGSGMVDDFIKN 656 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G +K +HP ++P+LK+T GVI+YQEQVM+IA L+G+SL EAD+LRRAMGKK E Sbjct: 657 KHGFKKTKYLHPRLEPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 716 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + +FI GA++NG+ A IF+L+ FA YGFNKSH+AAYA++SYQTA++K +YP Sbjct: 717 IAGLRSQFIEGAARNGVDGETAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANYP 776 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 ++F+AA +T DN +K+ + ++ R+ I+++PP VN F V N+I + LAA+K Sbjct: 777 LQFMAALLTSVKDNTDKVAAYIEECRRLGIEVLPPDVNESRESFTVAGNKIRFGLAAVKN 836 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG I+ A D PF DFC R+D++ +N+RVLESL+ GA D GY R QL+ Sbjct: 837 VGMGAVDSIIRAREKDGPFSDYADFCRRLDTRVVNKRVLESLIKCGAFDSLGYRRAQLMA 896 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFY 962 ++D+ AQ ++ R N ++ G+ I+ + E+ LG Y Sbjct: 897 AVDSGLALAQQSQRERENGQLSLLDFFGGSTDSVSISFPEVGEYPEDELLAMEKETLGLY 956 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHPL Y+ L ++ E + + L ++ ++ TR+G + ++T + Sbjct: 957 ISGHPLSRYREALNRLTTVKTVEITDLPDNSEVVLGGLITDVKKINTRRGEVMAFLTLED 1016 Query: 1023 PAKEYEANFFP 1033 E FP Sbjct: 1017 LTGTVEVVVFP 1027 >gi|77918826|ref|YP_356641.1| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77544909|gb|ABA88471.1| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 1156 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 434/1042 (41%), Positives = 619/1042 (59%), Gaps = 23/1042 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +EK P FVHL VH+ YSLL+GA+ + +++ + PA+AITD N+F A+EF K Sbjct: 1 MEKVP-FVHLHVHTQYSLLDGAIRIGDLIKRAEDCGMPAVAITDHGNMFGAVEFFSKLKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 + ++PI+GC++ + + +N +VLL EGYQ L +VS Y + Sbjct: 60 SSVKPIVGCEVYVAPGSRFEKSN--VRGGDKAYHLVLLCQDIEGYQNLCRMVSAGY-REG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 RI L++ +GLI LT G + + A R +F + RLY Sbjct: 117 FYYKPRIDWDLLRKY-NKGLIALTACLGGELPSLLMQGKHEQAVARARDMAAIFDENRLY 175 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ + ++ ++ + LPLVATN+ +L+ E AH+VL+ V + Sbjct: 176 LELQENFIAEQKPVNEGLIAIGKELGLPLVATNDCHYLTRESAAAHEVLLCVQTGKTMDD 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR R + YLK EM +F PEAL NTV IA RC+ L P++ + Sbjct: 236 PDRFRFSNDEFYLKTPEEMAELFHYAPEALANTVAIADRCNLELDFDTYHFPQYEKP--- 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +K + L + GLE RLA+ + Y RL EL I M F GYF Sbjct: 293 -AEKTLDQVLEEDSWRGLEERLAEIRKVRPDFSAEEEKVYHDRLVRELECINSMGFPGYF 351 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N IPVGPGRGS AGS+ AYA+ ITDIDP+ ++LLFERFLNP+R+SMPD Sbjct: 352 LIVADFINWAKDNGIPVGPGRGSAAGSLVAYAIRITDIDPIPYNLLFERFLNPERVSMPD 411 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DFC R++VI YV+ KYG E VAQIITFG++ AK +RDVGRAL M Y VDR+ K Sbjct: 412 IDVDFCIYGREDVIEYVRQKYGEENVAQIITFGTMMAKGVIRDVGRALNMSYGDVDRIAK 471 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P + + + R +E + DP V +LL+I+ LEGL RHASTHAAG+V+ + Sbjct: 472 LVPTVLNITLKEA-LEQEPRLQELQDKDPQVKQLLDIALTLEGLTRHASTHAAGVVVTPK 530 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 PLS+ +P+Y D +S VTQF MK++E+ GL+KFDFLGLKTLT++ ++ + + + Sbjct: 531 PLSEYLPLYTDPKSGGQVTQFPMKYVEQIGLVKFDFLGLKTLTVIANAVRLIHEGNDPEF 590 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL L+ DD +TY LL+ T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ Sbjct: 591 DLKLVGDDDPDTYRLLSAGETTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLG 650 Query: 657 NIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + RK+GK++I P ++P+LK+T GVI+YQEQVM IAQ+L+ YSL AD+LR Sbjct: 651 SGMVDDFILRKHGKKEITYDFPQLEPILKDTYGVIVYQEQVMLIAQVLARYSLGGADLLR 710 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQKE F+SGA +N + A +F+L+ KFA YGFNKSH+AAYA+++Y Sbjct: 711 RAMGKKKPEEMAKQKEIFMSGARENELDVKKAEAVFDLMEKFAAYGFNKSHSAAYALVAY 770 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TA++KTHYPVEF+AA +T +M+N EK+ K + R I+++PP +N F V DN Sbjct: 771 HTAYLKTHYPVEFMAALLTEDMENTEKVIKNINEVRSMGIEVLPPDINASSSSFTVHDNA 830 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I + L A+KGVG I+E ++PF +L +FC RVD +K+N++V+E+L+ GA D Sbjct: 831 IRFGLGAVKGVGGAAIDAILEVRQEQPFTTLHEFCERVDLRKVNKKVVEALIKCGAFDSL 890 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVR 951 G R Q L L+ + Q V++ + ++F ++ + L + + V+ Sbjct: 891 GGHRAQYLVVLEEAMEIGQKVQREKAEGQASLFGTDEIVSQRGTSYGVLPEMEEWSDKVK 950 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ LGFY +GHPL Y+ ++R+ + +RL MV + T+K Sbjct: 951 LGFEKESLGFYITGHPLGRYQEVIRRFANCTTADVAERADKEEVRLCGMVSGIKDLVTKK 1010 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R+ +VT + + E FP Sbjct: 1011 GERMAFVTLEDLSGFVEMVVFP 1032 >gi|319790471|ref|YP_004152104.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1] gi|317114973|gb|ADU97463.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1] Length = 1150 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 398/1035 (38%), Positives = 616/1035 (59%), Gaps = 16/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL +HS YS+L+GA+ + +++ K PA+AITD N+F++ E + Sbjct: 1 MVRKGDFVHLHLHSQYSILDGAIKVKDLVKKAKELGMPAVAITDHGNMFASYELYKACKE 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I +G ++LL +G + L++L + + + Sbjct: 61 EGIKPIIGQEFYIAKGSRFDR-KKGGEGEKGSYHLILLAKNDKGLKNLMKLSTIGFT-EG 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L++ +EGLI L+ G + + + A + +K+LFG+ Y+ Sbjct: 119 FYYKPRIDKEVLEKY-SEGLIALSACIQGEVPLLYLMGKEEEARRAAQWYKELFGEDFYL 177 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ + +++LA ++ LVATN++ +L++ED+EAHDVL+ + +S + Sbjct: 178 ELQYHGIPEQKKANEFLIKLAKELDIELVATNDAHYLNKEDWEAHDVLLCLQTGKKLSDE 237 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + + Y+K+ EM+ +F ++P+A+ NT++IA + L+ + K Sbjct: 238 KRMRFPSREFYVKDAQEMLEVFKEVPQAVFNTLKIAEKVEERLETFENKGY-LLPKYEVP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR A GLE R + I G Q Y +RL+ EL +I M F GYFLIV D Sbjct: 297 EGHTYDSFLRKLAEEGLERRFKEQGITDGEKKQVYYERLNHELKIINDMGFPGYFLIVWD 356 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK+N IPVGPGRGS AGS+ AYA+ ITDIDP+RF+LLFERFLNP+R++MPD D+D Sbjct: 357 FINWAKRNGIPVGPGRGSAAGSLVAYAIGITDIDPIRFNLLFERFLNPERVTMPDIDVDI 416 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQD RD VI+YV+ KYG ++V QIITFG+++ K +RDVGR L +P +VD+L KLIP+D Sbjct: 417 CQDGRDRVIQYVREKYGEDKVCQIITFGTMKTKMVIRDVGRVLGIPPKEVDKLAKLIPDD 476 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+ RE D ++ RL++I+++L+GL R HAAG+VI L+ Sbjct: 477 AKSV--EDAVERAPEIRELAEKDETIARLIKIAKRLQGLARQTGVHAAGVVIAPETLTDY 534 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601 +P+ + + TQ++M +E GL+K DFLGLKTLT++ +++ + +R V++ + + Sbjct: 535 IPLAK-SKDGDITTQYDMGQVEALGLLKMDFLGLKTLTIIDRTIKLIKERHGVEIVPTKL 593 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659 P DD ET+ LL + T+G+FQLES GMR ++ ++P EDIIALV+LYRPGP+++ + Sbjct: 594 PLDDPETFKLLQSGNTVGVFQLESRGMRNLMKRLKPSVFEDIIALVALYRPGPLNSGMAE 653 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G+E++ I P ++P+LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGK Sbjct: 654 SYIRRKHGQEEVDYIFPELEPVLKETYGLFIYQEQIMQIANILAGYSLGEADLLRRAMGK 713 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K KE M++Q+ F+S A + G + +F+ +AKFA+YGFNKSH+AAY ++Y TA++ Sbjct: 714 KKKEIMEEQRSIFVSRAVERGYPREKIEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYL 773 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP E A M+++ D ++I KF +D ++ I ++PP +N F++ I + L Sbjct: 774 KAHYPKELFATMMSIDFDKTDEIVKFIKDCKENGINVLPPDINRSGAYFEIEGEAIRFGL 833 Query: 840 AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 A IKGVG A HI E + F L DFC RVD K +NR+V+E+L+ AGA D G +R Sbjct: 834 AGIKGVGEKAALHIEEVRKEGGEFKDLFDFCRRVDLKVVNRKVIEALIKAGAFDSTGINR 893 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +LD AQ ++K+++ ++F + ++ + V+ E E++ Sbjct: 894 ASNLAALDRAMNAAQSIQKSQSKGLLSLFGEAESIV--QVEFPEVEEWPERVKLEYERQA 951 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 +GFY SGHPL +K I+ + E G + LA + + ++T++G V Sbjct: 952 IGFYLSGHPLLEFKEIVT-LAFDSTAEKEEWKDGQELTLAGAITDVKLRRTQRGDLWATV 1010 Query: 1019 TFSEPAKEYEANFFP 1033 ++ FP Sbjct: 1011 ELTDLDGSTSVLVFP 1025 >gi|148264552|ref|YP_001231258.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4] gi|146398052|gb|ABQ26685.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4] Length = 1157 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 415/1039 (39%), Positives = 624/1039 (60%), Gaps = 20/1039 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ +FVHL +H+ YSLL+GA+ L +++ K + PA+AITD ++F A+EF K Sbjct: 1 MSEA-NFVHLHLHTQYSLLDGAIRLGDLVKKAKGYEMPAVAITDHGSMFGAIEFYTKCKD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG ++ I + + ++LL +GY+ L LVS Y + Sbjct: 60 KGIKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLILLCENLQGYKNLSWLVSAGY-KEG 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L + +EGLI L+ G + N + A + ++F DR Y+ Sbjct: 119 FYYKPRIDKEILAQ-HSEGLIALSACLKGEVAYQCGRNRVEDAIATARWYSEIFPDRYYI 177 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ + ++ +++ LA LPLVATN+ +L+ ED +AH+VL+ + ++ Sbjct: 178 ELQENTLPEQDLVNKRLLDLAAELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDP 237 Query: 244 DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R + + Y K+ EM + F PEA+ NTV IA RC+ L P++I+ Sbjct: 238 NRMHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAERCNLELDFKTYHFPQYIKP---- 293 Query: 303 IQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 K ++ L ++ GL+ R A+ Q Y +RL EL+ I +M F GYFL Sbjct: 294 ADKTLDDVLEEQSYEGLKERLVTVRAKYPDITPEQEQGYYERLRIELDCIKQMGFPGYFL 353 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI WAK + IPVGPGRGS AGS+ AY++ ITDIDP+ ++LLFERFLNP+R+SMPD Sbjct: 354 IVADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDI 413 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFCQDRR+EVI+YV KYG ++V QIITFG++ A+ LRDVGRAL M Y VD++ KL Sbjct: 414 DVDFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMAYGDVDKIAKL 473 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P + + + + E AD V LL+++ LEGL RHASTHAAG+V+ Sbjct: 474 VPEVLGITLDKA-LQQEPKLNELAAADRRVKELLDVALCLEGLARHASTHAAGVVVAPDV 532 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L + P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + + D Sbjct: 533 LEEFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPAFD 592 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++L+ DD E+Y LL + T G+FQLESSGM+ L ++P C EDIIA+ +LYRPGP+ + Sbjct: 593 ITLLRDDDEESYRLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGS 652 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+GK+K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL +AD+LRR Sbjct: 653 GMVDDFIDRKHGKKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGQADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M K+K F++GA + GI A +IF+L+AKFA+YGFNKSH+AAYA+++YQ Sbjct: 713 AMGKKDPEVMAKEKIPFLAGAKEQGIDPKKAESIFDLMAKFAEYGFNKSHSAAYALVAYQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPVEF+AA +T +M N +K+ K D R I+++PP +N F+V I Sbjct: 773 TAYLKAHYPVEFMAALLTEDMGNTDKVIKNISDCRDMGIEVLPPDINASDHSFRVLGKSI 832 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+K VG + I+E+ F + DFC RVD +++N+RV+ESLV GA D G Sbjct: 833 RFGLGAVKNVGESAIEAIIESRKSGSFADIYDFCERVDLRRVNKRVVESLVKCGAFDSTG 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRF 952 R L+ +L++ Q +++ R + ++F + G + K +L + + Sbjct: 893 ARRAPLMAALEDAMVLGQKIQQERDSAQVSLFGVAEIVRGNGNGKGSLPDVPEWDDKLLL 952 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ LGFY +GHPLD Y +++ + ++L +VV+K++ T+KG Sbjct: 953 NQEKEALGFYITGHPLDRYSSQIKRFATVHTSDFGEISDRAEVKLCGIVVTKKEFITKKG 1012 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 R+ +VT + E Sbjct: 1013 ERMAFVTLEDLHGSVEVVV 1031 >gi|222056375|ref|YP_002538737.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32] gi|221565664|gb|ACM21636.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32] Length = 1156 Score = 857 bits (2214), Expect = 0.0, Method: Composition-based stats. Identities = 418/1037 (40%), Positives = 619/1037 (59%), Gaps = 19/1037 (1%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL +H+ YSLL+GA+ L +++ K+ + PA+AITD N+F A+EF K G Sbjct: 2 SQPDFVHLHLHTQYSLLDGAIRLGDLIKKVKGYEMPAVAITDHGNMFGAIEFYTKCKDKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIG ++ I + + +VLL +GY+ L LVS Y + Sbjct: 62 IKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLVLLCQNLQGYRNLSWLVSAGY-KEGFY 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L E +EGLI L+ G + N + A + +LF R Y+ L Sbjct: 121 YKPRIDKEILAE-HSEGLIALSACLKGEVAYQCGRNRIEDAVATARWYSELFPGRYYIEL 179 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + ++ +++++A LPLVATN+ +L+ ED +AH+VL+ + ++ + Sbjct: 180 QENTLPEQDVANKRLLEVASELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNH 239 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + Y K+ EM + F PEA+ NTV IA C F L P++I+ Sbjct: 240 MHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAESCDFELDFKTYHFPQYIKP----AD 295 Query: 305 KEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K ++ L +A GL+ R A+ + Y RL EL+ I +M F GYFLIV Sbjct: 296 KSLDDVLEEQAYEGLKDRLVAVRAKYPDLTADQEKGYYDRLRIELDCIKQMGFPGYFLIV 355 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI WAK + IPVGPGRGS AGS+ AY++ ITD+DP+ ++LLFERFLNP+R+SMPD D+ Sbjct: 356 ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPIPYNLLFERFLNPERISMPDIDV 415 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRR+EVI+YV KYG ++V QIITFG++ A+ LRDVGRAL M Y VDR+ KL+P Sbjct: 416 DFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMSYGDVDRIAKLVP 475 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + + + E ADP + LL+++ LEGL RHASTHAAG+V+ L Sbjct: 476 EVLGITLEKA-LQQEPKLNELAEADPRIKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ ++ + + D++ Sbjct: 535 AFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKLIRAGKNADFDIT 594 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 ++ DD ETY LL + T G+FQLESSGM+ L ++P C EDIIA+ +LYRPGP+ + + Sbjct: 595 VLRDDDEETYKLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654 Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + +RK+G++K+V P ++P+LK+T GVI+YQEQVMQI+++L+GYSL +AD+LRRAM Sbjct: 655 VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRVLAGYSLGQADLLRRAM 714 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E M K+K F++GA K I A IF+L+AKFA+YGFNKSH+AAYA+++YQTA Sbjct: 715 GKKDPEVMAKEKIPFLAGAEKQNIDPKKAEAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++KTHYPVEF+AA +T +M + +K+ K D R I+++PP +N + F+V N I + Sbjct: 775 YLKTHYPVEFMAALLTEDMGSTDKVIKNISDCRDMGIEVLPPDINASDLSFRVLGNSIRF 834 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+K VG + I+EA F + DF RVD +K+N+RV+ESL+ GA D G Sbjct: 835 GLGAVKNVGESAIEAILEARKTGSFADIFDFGERVDQRKVNKRVVESLIKCGAFDSTGAK 894 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954 R L+ L++ Q +++ R + ++F E+ G + K +L + Sbjct: 895 RAPLMAGLEDAMSLGQKIQQERESAQVSLFGVEEMTRGNGNGKGSLPDLPEWDDKFLLNQ 954 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFY +GHPLD Y +R+ + +++ +VV+K++ T+KG R Sbjct: 955 EKEALGFYITGHPLDRYSAQIRRFASVHTSDFAEIKDKAEVKICGIVVAKKEFITKKGDR 1014 Query: 1015 IGWVTFSEPAKEYEANF 1031 + +VT + E Sbjct: 1015 MAFVTLEDLHGTVEVVV 1031 >gi|121534258|ref|ZP_01666082.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1] gi|121307028|gb|EAX47946.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1] Length = 1129 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 402/1031 (38%), Positives = 610/1031 (59%), Gaps = 27/1031 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + +++ + PA+AITD N++ ++F ++A AAGI+P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKHLVCRAKELGMPALAITDHGNMYGVIDFYKQARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + T +VLL T +GY+ LIELVSR + Sbjct: 62 IIGCEVYVAPRSRWEKTA---VEGEAYYHLVLLAETDQGYRNLIELVSRAN-SEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ L+ + GLI L+G +G I + AE ++ +FG R ++ LQ Sbjct: 118 RVDKELLRTY-STGLICLSGCIAGEIPALLLKGDFEGAEALAHEYRDIFGPRNFFLELQD 176 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +Q+ LA L LVATN+ ++ + D E HDVL+ + V R R Sbjct: 177 HNLPEQKQVNAQLALLADKLGLGLVATNDIHYVDKGDAECHDVLLCIQTGKTVDDSGRMR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK+ +EM ++F P+A+ NT+ IA RC ++ LP F Sbjct: 237 FPNNEFYLKSPAEMAALFGWRPDAITNTLVIAERCQVSIEFGKLHLPEFPVPAG----LT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR L R G +RL++EL VI +M +S YFLIV DF+ + Sbjct: 293 ADEYLRRLCFERLPRRYPTGTAQAT-------ERLEYELAVIQKMGYSSYFLIVWDFVNF 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +IPVGPGRGS AGS+ +Y L IT+IDPL++ LLFERFLNP+R++MPD DIDFC +R Sbjct: 346 ARSRDIPVGPGRGSAAGSIVSYLLGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCYER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R ++I YV +YG + VAQIITFG++ A+AA+RDVGRAL +PY +VDR+ KLIP + Sbjct: 406 RGQIIDYVAKRYGADHVAQIITFGTMAARAAVRDVGRALNLPYGEVDRIAKLIPTELGTT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + RE D V +LL+++ +EGL RHASTHAAG+VI L+Q VP+ Sbjct: 466 L-QRALEVSTELRELYETDDKVRKLLDLAMAVEGLPRHASTHAAGLVIAKEKLTQYVPLQ 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 TQ++ +E+ GL+K D LGL+TLT++ +L+ + + RG+++D+ IP DD Sbjct: 525 N-STEGFVTTQYDKDRVEEIGLLKMDLLGLRTLTVIGDTLELVRKSRGIRLDIDAIPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T LL TLG+FQ+ES+GM ++ ++P+ +D+I LV+LYRPGP+ + + + Sbjct: 584 AKTCQLLANGETLGVFQMESAGMTNLVKELKPERFDDLIPLVALYRPGPLGSGMVADFIA 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 ++GK+++ HPL++P+LKET GVI+YQEQVMQIA +++G++L +AD+LRRAMGKK E Sbjct: 644 GRHGKKEVQYPHPLLEPILKETFGVILYQEQVMQIASVMAGFTLGQADLLRRAMGKKKHE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++ Q++ F+ GA++ GI A NIFEL+A FADYGFNKSH+AAYA+++YQTA++K HY Sbjct: 704 VLEAQRDNFMRGAAERGIDSATAANIFELMAHFADYGFNKSHSAAYALVAYQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF+AA +T M EK+ + ++ R+ I ++PP +N +F V I + LA +K Sbjct: 764 PQEFMAALLTSVMGANEKVGLYIEECRRLGIPVLPPDINASRENFTVDGQAIRFGLAGVK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG +I+ A + F SL DFC+RVD + +N+RV+ESL+ GA D G+ R QLL Sbjct: 824 NVGDAAIANIIAARDSGGKFTSLVDFCTRVDMRTVNKRVIESLIKCGAFDSLGWRRSQLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD + A +++ + +F+ E +D I E+ + GFY Sbjct: 884 AILDQAVEAAASRQRDLASGQMGLFSDETVNSADDIVPPPLEELPKEQLLAMEKEMTGFY 943 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPLD Y+ L +E + G + +A ++ ++ T+ G + + T + Sbjct: 944 VTGHPLDKYRDQLNNY--TKIDELMQYADGQTVCIAGLIAGAKRITTKGGEMMCFATLED 1001 Query: 1023 PAKEYEANFFP 1033 + E FP Sbjct: 1002 FTNQVEVVIFP 1012 >gi|258514118|ref|YP_003190340.1| DNA polymerase III DnaE [Desulfotomaculum acetoxidans DSM 771] gi|257777823|gb|ACV61717.1| DNA polymerase III, alpha subunit [Desulfotomaculum acetoxidans DSM 771] Length = 1145 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 395/1034 (38%), Positives = 612/1034 (59%), Gaps = 26/1034 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL VH+ YSLL+GA + ++ K + A+AITD +F ++F + GI+ Sbjct: 2 PSFVHLHVHTEYSLLDGAARIKEVVKKAKSLGMSALAITDHGVMFGVVDFFKACKKEGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC++ + + T + + +VLL GY+ L+ LVS + + Sbjct: 62 PILGCEVYVAPRSRHDRTPR---VDDNLYHLVLLAKNETGYRNLLNLVSISFT-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L +EGLI L+G +G + + + A + K+FG D Y+ +Q Sbjct: 118 PRVDKEVLAMY-SEGLIALSGCIAGEVAEYILKDLPEQARAAAAEYLKIFGEDNYYLEIQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + ++V+++ +PLVATN+ ++++E+ E DVL+ + V R Sbjct: 177 DHSFPEQKKANRELVKISEELNIPLVATNDVHYVAKENAEMQDVLLCIQTGKTVDDPKRM 236 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + + YLK+ EM +F +LP+AL+NTV IA +C ++ LP + E Sbjct: 237 KFQSQEFYLKSPEEMAELFPELPQALQNTVSIADKCEISMEFGQLHLPFYQVPEG----H 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ LR GL R + RQR++FEL+VI +M +S YFLIV DFI Sbjct: 293 TVESYLRELCEKGLLDRYG------AAPEESVRQRMEFELSVIEQMGYSAYFLIVWDFID 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++N +PVGPGRGS AGS+ +Y L IT++DPL++ LLFERFLNP+R+SMPD DID C + Sbjct: 347 YARQNGVPVGPGRGSAAGSLVSYVLGITNLDPLKYDLLFERFLNPERVSMPDIDIDICYE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR++VI YV KYG ERVAQI TFG++ AK A+RDVGRAL M Y +VDR+ KL+P + Sbjct: 407 RRNKVIEYVVRKYGAERVAQIATFGTMAAKGAIRDVGRALAMSYGEVDRVAKLVPAELHM 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A++++ EA +P V RL++ ++ LEG+ RHASTHAAG+VI +PL+ +P+ Sbjct: 467 TIE-KALSENQDLLEAYNNEPEVRRLIDTAKGLEGMPRHASTHAAGVVITKQPLTHYLPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 Y+ TQF + +E+ GL+K D LGL+TLT++ ++ + +R D+ I + Sbjct: 526 YK-STDGPVTTQFAKEPVEELGLLKMDLLGLRTLTVIADAVAEVNKRAGSPLDIDKITLE 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D T+ LL+ +G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + + + Sbjct: 585 DKNTFDLLSRGEGIGVFQLESSGMRAILRDLKPEVFEDIVALVALYRPGPLGSGMVDDFI 644 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G +K+ +HP+++P+LK+T GVI+YQEQVM+I+ L+G+SL EAD+LRRAMGKK Sbjct: 645 KNKHGLQKVSYLHPILEPILKDTYGVILYQEQVMRISSDLAGFSLGEADLLRRAMGKKKP 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E + + +F+ GA+K + +A +F+L+ FA YGFNKSH+AAYA++SYQTA++K + Sbjct: 705 EVIAGLRSQFMEGAAKKDVDPEVAGKVFDLMEFFAGYGFNKSHSAAYALVSYQTAYLKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP EF+AA +T DN +K+ + ++ R+ I ++PP VN F V ++I + LAA+ Sbjct: 765 YPAEFMAALLTSVRDNSDKVAVYIEECRRMGIVVLPPDVNESRDGFTVVGDKIRFGLAAM 824 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG I+ PF + DFC+R+D++ +NRRVLESL+ GA D G+ R QL Sbjct: 825 KNVGLAAVYSIISMREQGGPFKNYADFCNRLDTRVVNRRVLESLIKGGAFDSLGHRRAQL 884 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKFSVENSSVRFENEQRVL 959 + +D AQ +++R + ++F + ++ L + S E+ L Sbjct: 885 MAVVDTGLSIAQQAQRDRNSGQMSLFEFLEEEEEYNLSFVLPDIAEYLYSEMLALEKESL 944 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHPL Y+ +LR+ E G + L ++++ +Q T+KG + +V Sbjct: 945 GLYISGHPLAEYREVLRQNDTVNAGELPDFTEGETVALGGLIINYKQITTKKGDAMAFVN 1004 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 1005 LEDLTGVVEVVIFP 1018 >gi|296133826|ref|YP_003641073.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296032404|gb|ADG83172.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1146 Score = 855 bits (2209), Expect = 0.0, Method: Composition-based stats. Identities = 391/1034 (37%), Positives = 608/1034 (58%), Gaps = 26/1034 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F+HL VH+ YSLL+GA + +++ A A+A+TD ++F ++F + AGI Sbjct: 2 AADFIHLHVHTEYSLLDGAARIRDLVSAAAEKGMKALAVTDHGSMFGVIDFYKACKKAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC++ + + M ++ +VLL GY+ L+ +VS Y Sbjct: 62 KPILGCEVYVAPRS---MDDREPGRDDANYHLVLLAENETGYKNLLHIVSEAYTRG-FYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R + L++ +EGLI L+ G I A S A ++ +FG ++ L Sbjct: 118 KPRTDKAALRK-HSEGLIALSACLGGEIATAIVNGQSDKARAAAREYEDIFGKGNFFLEL 176 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ ++V++ +PLV TN+ ++ + D E DVL+ + + DR Sbjct: 177 QDHGLENQRMVNMELVKIGRELNIPLVVTNDVHYVRKSDAEVQDVLLCIGTGRTMEDADR 236 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 T + YLK+ EM + + PEAL NTV IA RC+ LP ++ E Sbjct: 237 MEFGTSEFYLKDAREMALLAGEYPEALANTVNIAARCNVEFDFSQNYLPDYMIPEG---- 292 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ LR + GL+ R ++ R+RL++EL VI M F GYFLIV DF+ Sbjct: 293 HTVESYLRQLCLDGLKKRYPNAG-------EEVRRRLEYELQVINDMGFPGYFLIVWDFV 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A++ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R++MPD DIDFC Sbjct: 346 RFAREKGILVGPGRGSAAGSLVAYTLGITNIDPLKYDLLFERFLNPERVTMPDIDIDFCY 405 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 ++R+EVIRYV +YG +RVAQIITFG++ A+AA+RDVGRAL MPY++VDR+ K+IP + Sbjct: 406 EKREEVIRYVIERYGADRVAQIITFGTMAARAAIRDVGRALNMPYAEVDRVAKMIPGELG 465 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + RE +P V +L+++++ +EG+ RHASTHAAG+VIG PL++ +P Sbjct: 466 MTLDKA-LEASPELRELYETEPKVHKLVDMARAIEGMPRHASTHAAGVVIGREPLTRYLP 524 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +YR + TQF + +E+ GL+K D LGL+TLT++ +++ + ++D+ IP Sbjct: 525 LYRSS-DGVVTTQFAKETVEEIGLLKMDLLGLRTLTVIGDAVNIIKHTTGDEIDIDNIPL 583 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD TY +L +G+FQLESSGMR L+ ++P+ ++DIIALV+LYRPGP+ + + + Sbjct: 584 DDRATYEMLGRGDAIGVFQLESSGMRAILKELKPEVLDDIIALVALYRPGPLGSGMVEDF 643 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+ +I +HP ++P+LK+T GVI+YQEQVM+IA L+G++L EAD+LRRAMGKK Sbjct: 644 IRRKHGQSEIKYLHPALEPILKDTYGVILYQEQVMRIASDLAGFTLGEADLLRRAMGKKK 703 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E + + +FI GA KN I +TIA IF+L+ FA YGFNKSH+AAYA++SYQTA++K Sbjct: 704 PEVIAGLRNQFIEGARKNNIEETIAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKA 763 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YPV ++AA +T + +K+ + ++ ++ I I+PP +N V+F V ++I + LAA Sbjct: 764 NYPVAYMAALLTSVAGSSDKVAVYIEECKRMGIDILPPDINESLVNFTVVGDKIRFGLAA 823 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG HI+ + K F SL DFC R + + + +RV+ESL+ GA D +R QL Sbjct: 824 VKNVGRQAIEHIIAVRSKKKFASLLDFCERAEHRVVTKRVIESLIKGGAFDSLTGNRRQL 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L+ LD ++A +K+ + ++F +F ++ L E+ +L Sbjct: 884 LEGLDRCLEWAAKRQKDLSTGQISLFDVYEGDSSFGGEVPLPPVPDFPQHELLAMEKEML 943 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHPL+ Y+ L + + V + + ++ ++ TR+G + + Sbjct: 944 GLYISGHPLEQYRRELAEKTTATTAQLVEMQDQEEVVIGGIIAGMRKITTRRGETMLLMN 1003 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 1004 LEDLVGSVEVIVFP 1017 >gi|95930421|ref|ZP_01313157.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM 684] gi|95133461|gb|EAT15124.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM 684] Length = 1158 Score = 854 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 426/1039 (41%), Positives = 623/1039 (59%), Gaps = 15/1039 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + +FVHL +HS YSLL+GA+ + N+++++ + PA+AITD N+F A+EF KA A Sbjct: 1 MEHA-NFVHLHLHSQYSLLDGAIKIPNLIERVKEYKMPAVAITDHGNMFGAMEFYTKATA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIGC++ + + +N + +VLL GY+ L LVS Y + Sbjct: 60 AGVKPIIGCEVYVAPGRRTEKSN-ARGSSEASYHLVLLCQNKIGYRNLCYLVSTAY-REG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183 RI L E EGLI ++ G I A R ++F DR Y Sbjct: 118 FYYKPRIDWDLLTEY-NEGLIAMSACLGGEIPTLINLGRPDDALARAEQMAQVFDDDRFY 176 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ + ++ + ++ ++ LPLVATN+ +L ED AH+VL+ + + Sbjct: 177 LELQENGIPEQATANTGLIDISGKLGLPLVATNDCHYLRREDAYAHEVLLCIQTGKTMDD 236 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R Y++ EM +FS +P+AL+NTVEIA+RC+ P++ + Sbjct: 237 EKRMRFANDGFYVRTPDEMRELFSHVPQALDNTVEIAQRCNLDFDFDTYHFPQYEKPADK 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + E R+ L++ + Q Y+ RL+ EL I M F GYF+IVA Sbjct: 297 TLDEVLEEMARDGLEDRLKMIRSLNPDLSAEEEQVYQDRLERELKTIRDMGFPGYFIIVA 356 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK ++IPVGPGRGS AGS+ A+A+ ITDIDP+ + LLFERFLNP+R+SMPD D+D Sbjct: 357 DFINWAKDHDIPVGPGRGSAAGSLVAFAIRITDIDPIPYDLLFERFLNPERISMPDIDVD 416 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC R++VI+YVQ +YG VAQIITFG+L AK ++DVGRAL MPY +VD+L KL+P Sbjct: 417 FCIYGREKVIQYVQEEYGAPNVAQIITFGTLGAKGVIKDVGRALNMPYGEVDKLSKLVPA 476 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + A+ + R +E +D V LL ++ LEGL RHASTHAAG+V+ PL+ Sbjct: 477 VLNITLK-DALQQEPRIQEMAKSDVRVKELLNVALSLEGLTRHASTHAAGVVVTPNPLTD 535 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 +P+Y D +S VTQF M ++EK GL+KFDFLGLKTLT++ +L + + DL++ Sbjct: 536 YLPLYTDQKSGGQVTQFPMSYVEKIGLVKFDFLGLKTLTVIDNALRLIHSAKNPDFDLNV 595 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I DD TY LL+ T G+FQLESSGM++ L ++P+C EDIIA +LYRPGP+ + +V Sbjct: 596 IGDDDEATYELLSHGDTTGVFQLESSGMKELLVKLKPNCFEDIIAACALYRPGPLGSGMV 655 Query: 661 YNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G++ IV P ++P+LK+T GVI+YQEQVM IAQ L+ YSL AD+LRRAMG Sbjct: 656 DDFILRKHGQKDIVYDFPQLEPILKDTYGVIVYQEQVMLIAQTLANYSLGGADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM+KQK F+ GA +N + A +F+L+A FA YGFNKSH+AAYA+++Y TA+ Sbjct: 716 KKKPEEMEKQKVLFLKGAKENNLDPKKAEAVFDLMAMFAAYGFNKSHSAAYALVAYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPVEF+AA +T +M+N +K+ K + R I+++PP +N F V +N + + Sbjct: 776 LKAHYPVEFMAALLTEDMENTDKVIKNIAEVRSMGIEVLPPDINASIRSFTVHENAMRFG 835 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+KGVGT I+ D P+DSL DFC RVD K+N++V+ESL+ GA D G Sbjct: 836 LGAVKGVGTAALDSIIHVREVDGPYDSLNDFCERVDLGKVNKKVVESLIKCGAFDSLGGK 895 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSVRFEN 954 R Q + +L++ + Q V++ + E++F E+ + S L + + +R N Sbjct: 896 RAQYMDALESAMEIGQQVQREKQQGQESLFGMEEMVTRSGSSYGELPDVAEWDDKLRLNN 955 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFY +GHPL Y +++ V +R+ +V K++ T+KG R Sbjct: 956 EKEALGFYITGHPLSRYAEDIKRFATCDLSGLVERNDKEEVRVCGIVSGKKELVTKKGDR 1015 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T + E FP Sbjct: 1016 MAFITLEDLTGSLEVVVFP 1034 >gi|258593588|emb|CBE69929.1| DNA polymerase III, alpha subunit [NC10 bacterium 'Dutch sediment'] Length = 1146 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 429/1034 (41%), Positives = 618/1034 (59%), Gaps = 24/1034 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL VH+ YSLL+GA SL ++ K + PA+A+TD NLF A++F A GI+ Sbjct: 4 SDFVHLHVHTQYSLLDGACSLETLVAKAKEYKMPALAMTDHGNLFGAIDFYTLAMKEGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ I + +NQ + + I LL GY+ L++LVS YL + Sbjct: 64 PIIGSEVYIAPGSRFEKSNQD-SGYEGASHITLLAKDQVGYRNLMKLVSAGYL-EGFYYK 121 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI + +GLI L+G + +A A++ + + G + ++ +Q Sbjct: 122 PRIDRELFAQ-HCQGLIALSGCLNSEAAKALLDGDEARAKETVGWYMDALGRENYFLEVQ 180 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ V++LA +LP+VATN+ + S+ED AH+VL+ + + KDR Sbjct: 181 NHGIAEQKTVTDGVLRLAKAFDLPIVATNDLHYPSKEDARAHEVLLCIQTGKTIQDKDRW 240 Query: 247 RVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + D + +EM IF++LPEA+ NT+ +A RC+ LQ LPR+ E + Sbjct: 241 RFSTDQFYFKSAAEMKQIFAELPEAVRNTITVAERCNLQLQFGQLRLPRYQVPEG----Q 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ L + A GL++R + + RL +EL+VI + FSGYFL+V DFI+ Sbjct: 297 TLESYLAHLAWEGLKIRYPDANV-------EVEARLKYELDVIQKTGFSGYFLVVWDFIK 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK I VGPGRGS A S+ AY L IT+IDPLR+ L+FERFLNP+R+SMPD DIDF D Sbjct: 350 FAKDRGISVGPGRGSAAASLVAYCLNITNIDPLRYGLIFERFLNPERISMPDMDIDFSDD 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV KYG + VAQIITFG++ AKA +RDVGR L MPY++VD++ KL+PN Sbjct: 410 RRDEVIEYVTRKYGADNVAQIITFGTMGAKAVIRDVGRGLGMPYAEVDKIAKLVPNRINI 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + IA+ EA V L ++++ LEGL RHASTHAAG+VI PL++ VP+ Sbjct: 470 SLDEA-IAESPPLTEAVQNRTEVGELWQVAKCLEGLTRHASTHAAGVVISGDPLTEHVPL 528 Query: 546 YRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 Y+D ++ P TQ+ MK IEK GL+K DFLGL+TLT++ +L+ +A RG K+ + IP Sbjct: 529 YKDPKAGSKPTTQYAMKAIEKIGLLKVDFLGLRTLTVIANTLELIASGRGDKITIEKIPL 588 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + LL+ T G+FQLESSGMR + ++P+ +ED+IALV+LYRPGP+ I + N Sbjct: 589 DDPAVFSLLSEARTFGVFQLESSGMRDLMRRLKPERLEDVIALVALYRPGPMVMIDDFIN 648 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RKNGK KI HPL++ +LKET G+++YQEQVM+IA L+G+S+ EADVLR+AMGKK E Sbjct: 649 RKNGKVKIRYDHPLMETILKETYGIMVYQEQVMRIASDLAGFSMGEADVLRKAMGKKDPE 708 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 MD+Q+++F+ GA G+ A IF+ +A FA Y FNK HA +YA+++YQTA++K HY Sbjct: 709 MMDQQRKKFVDGAKVKGVQARTAEKIFDKMAPFAGYAFNKPHATSYALLAYQTAYLKAHY 768 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA +T EM + + I K+ + +Q I ++PP VN F V +I + L AIK Sbjct: 769 PVEFMAALLTSEMADTDGIVKYIDECKQMGITVLPPDVNESESRFTVVGEQIRFGLVAIK 828 Query: 844 GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG T + I+ PF SL DFC RVD + N+RV+ESL+ GA D G +R QL+ Sbjct: 829 NVGETAIQSILATRRDKGPFRSLFDFCERVDLRLTNKRVIESLIKCGAFDSLGAARAQLI 888 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVL 959 D + ++ R++ ++ + G L + + R E+ L Sbjct: 889 AVADKAMEAGAGTQRERSHGQGSLLDVLEATGGLSQQAEALPAIPEWSPTQRLAAEKETL 948 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY +GHPL Y+ ++ K+G + A + L A+V + ++ T+ G R+ +VT Sbjct: 949 GFYVTGHPLADYRDVIAKVGAVTTDRLAACQDKETVTLCAIVSAVKEITTKSGDRMAFVT 1008 Query: 1020 FSEPAKEYEANFFP 1033 F + A EA FP Sbjct: 1009 FEDMAGTVEAVAFP 1022 >gi|302392623|ref|YP_003828443.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium arabaticum DSM 5501] gi|302204700|gb|ADL13378.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium arabaticum DSM 5501] Length = 1129 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 397/1034 (38%), Positives = 613/1034 (59%), Gaps = 30/1034 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA + ++ + A PA+AITD N++ A+EF + A AGI+ Sbjct: 2 SGFVHLHCHTEYSLLDGAARIGELVTQAADYGMPALAITDHGNMYGAVEFYKAAKDAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ + + NQ + +VLL +GY+ L++LVS+ YL + Sbjct: 62 PIIGSEVYVAPESRF---NQKHNRADSPYHLVLLAKNNQGYRNLLKLVSKGYL-EGFYYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187 +I L L++ EGLI L+G +G I R Q ++ + T++ +FG+ Y+ LQ Sbjct: 118 PQIDLELLRKY-NEGLICLSGCLAGRIARGLLNEQQQQVKEMISTYQDIFGENDFYLELQ 176 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ +++L ++PLVATN+ +L++ED +AHDVL+ + +++ +DR Sbjct: 177 DQGLRKEKIINHSLIELGEEMDVPLVATNDVHYLNQEDAQAHDVLLCIQTGKLLTTEDRM 236 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + YLK+ EM IFS++P+A+ENTVEIA+RC+ L LP + E +K Sbjct: 237 KFPNDEFYLKSGQEMADIFSEVPQAIENTVEIAKRCNVELDFDQTYLPYYDVPE----EK 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + G G + ++RLD+EL +I M + YFLIV DFI+ Sbjct: 293 NLSSYLRELCLKGARK-------RYGEVTDEVQERLDYELEIINEMGYPAYFLIVWDFIE 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ I VGPGRGS AGS+ +Y L ITDIDPL L+FERFLNP R+SMPD DIDFC Sbjct: 346 YAKEKGIMVGPGRGSAAGSLVSYVLGITDIDPLEHGLIFERFLNPQRVSMPDIDIDFCYQ 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV KYG +RVAQIITFG++ A+A +RDVGR L + Y+QVD++ KLIP D Sbjct: 406 RRDEVIDYVTEKYGQDRVAQIITFGTMAARAVVRDVGRVLDLSYAQVDKIAKLIPFDA-- 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +A+ ++ + L++ +QKLEGL RHASTHAAG+VI L++ P+ Sbjct: 464 -DLDEALESSQELKDLCQKKDEIKELIDYAQKLEGLPRHASTHAAGVVISKEELTEYTPL 522 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 ++ TQ+ M +E GL+K DFLGL+TLT++ +L+ + + DL IP D Sbjct: 523 QQN--KGEVTTQYPMGDLEAIGLLKMDFLGLRTLTVINNTLEIIERTQGIKLDLDEIPLD 580 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D +TY LL T T G+FQ+ES+ ++ + ++P ED+IAL++L RPGP+ + + + Sbjct: 581 DEQTYQLLQTGNTEGLFQIESNLFQRLIADLKPTRFEDLIALLALGRPGPLGSGMVDDFI 640 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R++G+ ++ H ++ +L+ET GVI+YQEQVM+IA ++GYSL EAD+LRR MGKK Sbjct: 641 KRRHGEAEVEYPHADLEEILEETYGVILYQEQVMRIANEIAGYSLGEADILRRGMGKKKP 700 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E + K +++FI GA G S+ +A +F+L+ F YGFNKSH+AAYA +SY+TA++KT+ Sbjct: 701 ELLKKHRQKFIDGALDKGYSEELANELFDLMEYFGGYGFNKSHSAAYAFVSYRTAYLKTY 760 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVE++AA ++ M N +K+ ++ ++ + I+++PP VN V F V +RI + L A+ Sbjct: 761 YPVEYMAALLSSIMGNSDKVARYIEECNRMGIEVLPPDVNESEVRFTVVGDRIRFGLEAV 820 Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG I+ A + F+SL DFC +V K+N+RV+ESL+ AGA D G R Q+ Sbjct: 821 KNVGQKAIEEIIRARQEEGAFESLTDFCQKVFLGKVNQRVIESLIKAGAFDSLGAYRSQM 880 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L ++++ + A ++K + N ++ F + + ++ L + S + E+ L Sbjct: 881 LTVIEDLYEQAHKIQKEKGNGQQSFGDFLNADEFGNVEVKLPEMSEYSHDQLLAMEREYL 940 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G Y SGHP+D Y+ +L + + +R ++ S Q T+ G + ++ Sbjct: 941 GLYISGHPIDKYQDLLAENRFESIVAIKDLADKEEVRFGGIINSINQIITKNGKDMAFLE 1000 Query: 1020 FSEPAKEYEANFFP 1033 + + E FP Sbjct: 1001 LEDRTGQLEVVVFP 1014 >gi|20808235|ref|NP_623406.1| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4] gi|20516832|gb|AAM25010.1| DNA polymerase III alpha subunit [Thermoanaerobacter tengcongensis MB4] Length = 1148 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 384/1050 (36%), Positives = 600/1050 (57%), Gaps = 46/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGSCRIKDLIAKTKELGMKAIAITDHGAMYGVIDFYKEAVAQGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +M ++ +VLL GY+ L+++V+ L + R Sbjct: 65 IGCEIYVAPR---RMQDREYGIDDENYHLVLLAKDMTGYKNLMKIVTAASL-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L + +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 121 VDKEFL-KNHSEGLIALSACLAGEVPSLILRGDYEKAKEVALFYDSIFGRGNFYLELQDH 179 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ ++V+++ +PLVATN+ +L ++D AH+VL+ + + +DR Sbjct: 180 GILEQKKVNRELVRMSKETGIPLVATNDVHYLEKKDARAHEVLLCIQTGKTIEDEDRMLF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F+ EA+ENT +IA C+ + + LP++ E D Sbjct: 240 PTDEFYLKSPEEMEELFACCKEAIENTEKIAEMCNIEFEFNKTKLPKYDLPEGVDSY--- 296 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL +Q+ RL++EL+VI +M + YFLIV DFI++A Sbjct: 297 -EYLRNLCYEGLYK-------RYKSPSQEVIDRLEYELSVIKQMGYVDYFLIVWDFIKFA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 349 KDNGIMTGPGRGSAAGSLVAYTLGITNVDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 409 QEVIDYVVRKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDEIAKMIPFELGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + +E D V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 469 DRA-LELNPELKERYEKDERVKQLIDISKALEGLPRHASTHAAGVVISKEPLVNYVPLQK 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + + +DL + +DD Sbjct: 528 N--DDSVVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGIIIDLDSLNYDDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLES GMRQ + ++P +EDIIA +SLYRPGP+D I Y +N Sbjct: 586 KVYELISKGETEGVFQLESPGMRQFMTELKPKNLEDIIAGISLYRPGPMDQIPKYLANRN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 EKI HP++ P+L+ T G ++YQEQVMQI + ++GYSL AD++RRAM KK + M+ Sbjct: 646 NPEKIEYEHPILKPILEVTYGSLVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 705 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + +FA+Y FNKSHAAAYAVI+Y Sbjct: 706 QERKNFIYGIVDEEGNVVVPGALRNGLDEETANRLFDQMLEFANYAFNKSHAAAYAVIAY 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K ++PVEF+AA + +DN++KI + Q ++ I+++PP +N F V ++ Sbjct: 766 QTAYLKRYFPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVGDK 825 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ A F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 826 IRFGLSAVKNVGINVTEEIVREREARGKFKSVIDFFERMQDSQLNKKAIESLIKAGAFAS 885 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 G R QLLQS D + + + + + ++F + + Sbjct: 886 LGVKRSQLLQSYDKLIESVKKAKSSAIEGQISLFEVSEEHKEIDFRFPDVEEYPKNRILS 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------ATIRGNNIRLAAMVVS 1003 E+ LG Y SGHPL+ Y + K+ + + +A ++V+ Sbjct: 946 MEKETLGLYISGHPLEEYLEDIPKITNVTTLDFKINPEDEMFTSKLEDNQEVTIAGVIVA 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K+ K TR + + +VT + E FP Sbjct: 1006 KKVKFTRNSNIMAFVTLEDMYGTVEVIVFP 1035 >gi|302037892|ref|YP_003798214.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii] gi|300605956|emb|CBK42289.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii] Length = 1150 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 425/1036 (41%), Positives = 621/1036 (59%), Gaps = 22/1036 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + FVHL +H+ YSLL+GA ++ ++ ++ + QPA+A+TD N+F A+EF +KA AG+ Sbjct: 2 ASQFVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC+ + L+ ++LL + +GYQ LI+LVS+ YL + Sbjct: 62 KPIIGCEAYMAPGSRLEKN--SHLAHNDYYHLILLATNLKGYQNLIKLVSKAYL-EGFYY 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ LQ+ EGLI L+G SG + A K ++++FG D Y+ L Sbjct: 119 KPRMDKEILQQ-HHEGLIGLSGCLSGEVAYLIGQKDLAGATKAAGEYREIFGKDNYYLEL 177 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q + + ++++ ++PL TN+ +L +ED HD+++ + ++ +R Sbjct: 178 QANGLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNR 237 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T Y+K+ + +S F ++P A+ NTV+IA C+ L ++ LP+F E Sbjct: 238 MKFDTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEG---- 293 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ + A+ GL RL + + A Y+ RL E+ VI M F+GYFLIV D I Sbjct: 294 YTRESYVEQLALEGLAARLKERPSSIPEIA--YQVRLKEEVAVICSMGFAGYFLIVWDII 351 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ IPVGPGRGS AGS+ AYAL ITD+DPL +SLLFERFLNP+R+S+PD D+DFC Sbjct: 352 KFARSRGIPVGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCM 411 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI YV +KYG + VAQIITFG+++AKAA+RDVGR L+MPY++VDR+ KL+P+D Sbjct: 412 DRRDEVINYVIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLK 471 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + + R +E D V L+ ++Q LEGL RHASTHAAGIVI D+PL++ VP Sbjct: 472 MTLDKA-LEQEPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVP 530 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLI 601 +Y+ + + VTQ++M +EK GL+KFDFLGLKTLT++ ++ + + + Sbjct: 531 LYKGPKDE-IVTQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNEVHPDQPPLRVEQL 589 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 PFDD +T+ LL++ T G+FQLESSGMR L G++PD EDIIA+++LYRPGP+D I + Sbjct: 590 PFDDPDTFALLSSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPDF 649 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK GK I P ++P+LK+T GVI+YQEQVM IA ++G+SL +AD+LRRAMGKK Sbjct: 650 IKRKQGKIPIAYEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKKK 709 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM+K + +F+ GA + IS+ A ++EL+ KFA YGFNKSHAAAYAV+ YQTA++K Sbjct: 710 PEEMEKLRVQFLEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLKA 769 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EF+AA MT +M N +KI + + R I ++PP VN +F V D I + LAA Sbjct: 770 HYPTEFMAALMTTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLAA 829 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK VG I+E + PF S D RVD +KLN+R++E L+ AGA D G R Q Sbjct: 830 IKNVGEGAVEAIIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRSQ 889 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQR 957 L LD ++K R +IF + D+ L N + E+ Sbjct: 890 YLAVLDQAMDEGMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYERE 949 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 + GFY S HPL Y+ ++ + G ++L ++ + + T+KG R+ + Sbjct: 950 LTGFYISAHPLARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMAY 1009 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + E FP Sbjct: 1010 ITLEDLHGLVEVIAFP 1025 >gi|302343800|ref|YP_003808329.1| DNA polymerase III, subunit alpha [Desulfarculus baarsii DSM 2075] gi|301640413|gb|ADK85735.1| DNA polymerase III, alpha subunit [Desulfarculus baarsii DSM 2075] Length = 1152 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 423/1033 (40%), Positives = 633/1033 (61%), Gaps = 17/1033 (1%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL H++YSLL+GA+ L ++ + A A+A+TD N+F AL F Q+A AG+ Sbjct: 2 TPSFVHLHTHTAYSLLDGAIRLPELIKRTAELGMNAVAVTDHGNMFGALNFFQQAKKAGL 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + D + + T +VLL EGYQ L+ LVS + + Sbjct: 62 KPIIGCEVYVAPGDRRDKEH--RPGHETAFHLVLLCKNLEGYQNLVRLVSAGFT-EGFYY 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186 RI + L++ GLI L+ G + + A + G+ ++ L Sbjct: 119 KPRIDMELLRQ-HNGGLIALSACLGGRVPHYLLRGNIDQALAAAEDMAQTMGEGNFFIEL 177 Query: 187 QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + ++A L LV TN+ FL +D+EAHD+L+ + ++ +R Sbjct: 178 QDHGLVEQKQVNPGLREIAQRLGLGLVVTNDCHFLRRQDHEAHDILLCIQTGKTIADAER 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++P+ Y K+ EM +F D PEA+ NT++IA RC + + P++ E + Sbjct: 238 MTMSPELYFKSPEEMALLFPDCPEAMANTMDIAARCDLDIPLGQLRFPQYPLPEG----Q 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E++L A GLE RLA+ Y++RL++E++V+ +M F+GYFL+V+DFI Sbjct: 294 SAEDQLTRMARRGLERRLAEMDARGLKFDRDFYKKRLEYEIDVLLQMGFAGYFLVVSDFI 353 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK IPVGPGRGS AGS+ AY++ ITD+DP+R+ L+FERFLN +R SMPD D+DFC Sbjct: 354 VWAKSQGIPVGPGRGSAAGSLVAYSMRITDLDPIRYGLIFERFLNIERKSMPDIDVDFCY 413 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI+YV +YG + VAQIITFGS+ A+A +RDVGRA+ +P+ VD++ KL+P Sbjct: 414 NRRPEVIQYVTERYGSDHVAQIITFGSMLARAVIRDVGRAMNVPFGDVDQIAKLVPTALG 473 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + + R + +P V +L+ I++ LEGL RHASTHAAG+VIGD PL ++VP Sbjct: 474 MTLDKA-LEQEPRLAQRIKDEPQVAKLVRIAKSLEGLPRHASTHAAGVVIGDVPLDRVVP 532 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 +YR + + VTQF+MK +EKAGLIKFDFLGL+TLT++ ++ + Q R D+ I Sbjct: 533 LYRGSQGEC-VTQFDMKCVEKAGLIKFDFLGLRTLTVIDVAVKMIRQGRDPSFDIDAIDM 591 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD +Y LL+ T G+FQLESSGM++ L M+P+ ED+IALV+LYRPGP+++ + + Sbjct: 592 DDKASYELLSRGDTTGVFQLESSGMKELLTKMRPEVFEDVIALVALYRPGPLESGMVDDF 651 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K+G +K+ P ++P+LKET GVI+YQEQV +IA++L+GYSL E D+LRRAMGKK+ Sbjct: 652 VACKHGAKKVSYPLPQLEPVLKETYGVIVYQEQVQEIARILAGYSLGEGDILRRAMGKKV 711 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M Q+ERF+SGA NG+S+ A IF+L+ KFA YGFNKSH+AAY +I+YQTA++K Sbjct: 712 PEVMAAQRERFVSGAKANGVSEKKAGEIFDLMEKFAGYGFNKSHSAAYGLIAYQTAFLKA 771 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 H+P EF+AA +T E+ N +KI + R N++++PP +N +F V D+ I + LAA Sbjct: 772 HFPHEFMAALLTSEVSNTDKIMLHIAECRDQNLKVLPPDINHSGREFTVDDDAIRFGLAA 831 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG I+EA +KPF+ + DFC RV+ K+NRRV+ESL+ GA D G R Q Sbjct: 832 VKNVGEGAVDAIIEARQEKPFEDIFDFCERVNLAKVNRRVIESLIKCGAFDSLGAHRAQN 891 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +LD+ + Q + ++R N+ A + S + T+ + E+ LG Sbjct: 892 MAALDDAMEQGQKLGRDRDGGQINMFAAFSEAAASARPTMPDVPPWLEADALTYEKEALG 951 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY +GHPL + ++++G+ A G ++RLA + ++K T+KG R+ +V Sbjct: 952 FYITGHPLGRFAEDIKRLGVLDSVTVQAAADGMSVRLAGLATEIKEKITKKGDRMAFVRL 1011 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 1012 EDLKGSLELVVFP 1024 >gi|313903425|ref|ZP_07836816.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter subterraneus DSM 13965] gi|313466246|gb|EFR61769.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter subterraneus DSM 13965] Length = 1218 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 390/1111 (35%), Positives = 584/1111 (52%), Gaps = 106/1111 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + + + A PA+A+TD ++ A++F + GI+PI Sbjct: 4 FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+L + + + ++ L GY+ LI +VSR Y + R Sbjct: 64 IGCELYLARRTRHDREPK---LDDQPYHLLALAQNETGYRNLIRIVSRAY-AEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L + +EGLI+ +G I R + A + + + ++FGDR Y +Q H Sbjct: 120 ADRELLAQY-SEGLIVTSGCIGSEIPRLLLEGREEEALQAVRWYLEVFGDRFYFEIQDHG 178 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +++++LA ++P+VATN+ +L+++D AH+VL+ + + +R R Sbjct: 179 LPEERRAYARILELARRFDVPVVATNDVHYLNKDDAAAHEVLLCIQTGKTLDDPNRMRFE 238 Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+ YLK EM ++F D+PEAL NTV++A RC + +LP + E D Sbjct: 239 GPEFYLKTPEEMAALFRDVPEALANTVKLAERCQLEFEFGRFLLPHYEVPEGHD----AA 294 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + L R + R RL+ EL VI RM + YFLIV DF+ +A+ Sbjct: 295 SYLRYLCESKLPERYPNAGS-------EVRDRLNHELEVITRMGYPAYFLIVWDFVDYAR 347 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF RRD Sbjct: 348 RNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRRD 407 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P + Sbjct: 408 EVIEYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITLD 467 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA+ ++A P V +L+++++KLEG+ RHAS HAAG+VIG PL + VP+ R Sbjct: 468 -QALESSPELKQAYDQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR- 525 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 ++ VTQF M +E+ GL+K DFLGL+TL ++Q++ + Q G + L+ P Sbjct: 526 MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEQIIHQTGARDVLAEEPGPAGPG 585 Query: 609 YHL--------------------------------------------LTTKGTLGIFQLE 624 F+ Sbjct: 586 GAGGPAGAGGAGGASGEVGKDGPRGAGGAGGGPGGDGTAARRPFRVRDIPLDDAATFEAM 645 Query: 625 SSGMRQALEGMQPDCI------------EDIIALVSLYRPGPIDNIV--VYNNRKNGKEK 670 S G A+ ++ ED+IA V+L+RPGP+ + + + RK+G+ Sbjct: 646 SRGETAAMFQVESSGFTQMLRSLKPSSIEDLIAAVALFRPGPLGSGMVDDFIKRKHGQVP 705 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + HP ++P+LKET G I+YQEQVMQIA +++G++L EAD+LRRAMGKK EEM KQ+E Sbjct: 706 VEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFTLGEADLLRRAMGKKKPEEMQKQRE 765 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 +F++GA+ GI +A IF+L+ FA YGFNKSH+AAY ++Y TA++KTHYP ++AA Sbjct: 766 KFLAGAAAKGIDAELAGRIFDLMEYFAGYGFNKSHSAAYGYLAYVTAYLKTHYPAPYMAA 825 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIK 843 +++ M N +++ ++ + R+ I ++PP VN F V G I + LAA+K Sbjct: 826 TLSSVMSNSDRVAEYIAECRRLGIPVLPPDVNQSEARFTVVPDPGAPGGQAIRFGLAAVK 885 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I+ A PF SL+DFC RVD +++NRR LESL+ AGA D G R +L+ Sbjct: 886 NVGFGAIESIVAARQEGGPFRSLDDFCRRVDLRQVNRRALESLIKAGAFDSLGEPRARLV 945 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--------------------DKITLEK 942 L+ + AQ K R ++ + L Sbjct: 946 AGLEEVMNRAQRWHKERETGQVSLLDLTAALVGAGGRGSGGGGTGAGAAAADLEVTELPP 1005 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ VLG Y SGHPL Y+ L + + G +++ +V Sbjct: 1006 VDEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLADREDGARVQVGGLVQ 1065 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ TR G + +V + E FP Sbjct: 1066 GVRRITTRGGDFMAFVQLEDLEGTVEVVVFP 1096 >gi|260892340|ref|YP_003238437.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4] gi|260864481|gb|ACX51587.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4] Length = 1139 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 407/1035 (39%), Positives = 596/1035 (57%), Gaps = 28/1035 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA + +++ + Q A+AITD ++ ++F + GI+P Sbjct: 2 DFVHLHLHTEYSLLDGAARIKDVVKRAKELGQNALAITDHGVMYGVVDFYKACQEVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + T + +VLL EGY+ LIELVSR +L + Sbjct: 62 ILGCEVYVAPRGMTDRTPK---VDDNPYHLVLLAENEEGYRNLIELVSRAFL-EGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L + +GLI L+ +G + + AE+ ++ +FG D ++ LQ Sbjct: 118 RVDKYLLAQK-AKGLIALSACLAGEVAAHLLAGDFKKAEEAAGEYRDIFGKDNFFLELQD 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++LA ++PLVATN+ ++ D E D+L+ + V DR R Sbjct: 177 HGLPEQKPVNEGLIKLASRLDIPLVATNDVHYVERADAEVQDLLLCIQTGKSVGDPDRLR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK+ EM +F D P+AL TVEIA RC L LP F E Sbjct: 237 FGSDQFYLKSALEMARLFPDHPDALRATVEIASRCEVKLSFGEYHLPEFPVPEG----HT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR AG + R + +RL +EL VI RM + YFLIV D I + Sbjct: 293 PASYLRELCYAGAKKRYGDPL------PPEVEERLAYELQVIERMGYPPYFLIVWDVIHF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+S+PD D DFC + Sbjct: 347 ARRNGIMVGPGRGSAAGSLVAYCLGITNIDPLKYGLLFERFLNPERVSLPDIDTDFCFEM 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD+V+ YV +YG +RVAQI TF L A+AA+RD GRAL M Y++VDR+ +L+P +P Sbjct: 407 RDKVLEYVVRRYGADRVAQIATFAQLSARAAIRDAGRALGMSYAEVDRVARLVPGEPGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 V +A+ + +E + SV +LL+++ KLEG+ RHASTHAAG+VI PL +LVP++ Sbjct: 467 V-ARALEESPELKELYEKEASVKKLLDVAAKLEGIPRHASTHAAGVVITPEPLIRLVPLH 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF + +E+ GL+K D LGL+TLT+++ +L + +RGVK+DL IP DD Sbjct: 526 R-MPDGTVATQFTKEGVEELGLLKMDLLGLRTLTVIRDTLRHVNRRGVKLDLEKIPLDDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 T+ LL T+G+FQLESSGMR L +QP C ED+IALV+LYRPGP+ + + + R Sbjct: 585 ATFELLCRGDTIGVFQLESSGMRALLRSLQPSCFEDLIALVALYRPGPLGSGMVDDFIKR 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G I HP ++P+L+ET GVI+YQEQVMQIA L+G+SL EAD+LRRAMGKK EE Sbjct: 645 KHGLLPIEYPHPWLEPILRETYGVIVYQEQVMQIASRLAGFSLGEADLLRRAMGKKKPEE 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + + RF+ G+ + G+ + +A IF+ + FA YGFNKSH+AAYA+++YQTA++K +YP Sbjct: 705 LAALRSRFVKGSVERGVDERLAEEIFDRMEYFAGYGFNKSHSAAYALVAYQTAYLKANYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 VE++AA +T D EK+ + ++ R+ I+I PP +N DF D I + LAA+K Sbjct: 765 VEYMAALLTSVRDRTEKVALYVEECRRLGIKIFPPDINESERDFSPTPDGGIRFGLAAVK 824 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I+ PF DFC+RV + LNR+VLESL AGA G++R ++L Sbjct: 825 NVGEGAVEAILQARREGGPFRDFADFCARVGGRALNRKVLESLAKAGAFASLGHTRKEIL 884 Query: 903 QSLDNIQKYAQWVEKNRTNK-HENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 +S+D K A + + +F G + K E+ + Sbjct: 885 ESIDEGLKIANRAKAKKQQGIQICLFQNMEDFGGGYRLKFNRPNGEEFPRRELLRMEKEL 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL Y+ +LR + + +++ M+V ++ +TR+G + V Sbjct: 945 LGLYISGHPLAEYRDLLRLLTDVQVADLAEMEEDAEVKVGGMIVGMKRLRTRRGEPMAAV 1004 Query: 1019 TFSEPAKEYEANFFP 1033 + EA FP Sbjct: 1005 YLEDLTGVVEAVLFP 1019 >gi|51891797|ref|YP_074488.1| DNA polymerase III DnaE [Symbiobacterium thermophilum IAM 14863] gi|51855486|dbj|BAD39644.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1252 Score = 849 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 386/1036 (37%), Positives = 574/1036 (55%), Gaps = 35/1036 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA + + + A A+A+TD LF L F + G++ Sbjct: 29 PEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNHGVK 88 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+L + K+ + +L GY+ L++LVS Y + Sbjct: 89 PIIGCELYVAPGSR-----HVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYT-EGFYYK 142 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L L EGLI+L+G +G + + F + A + + ++++FG D ++ LQ Sbjct: 143 PRVDLELLNTY-REGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQ 201 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++ + LP+VATN++ +L +D DVL+ + + + +R R Sbjct: 202 DLGLPEQQGLNRFL---LEQGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMR 258 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T + Y+K+ EM F +P ALEN++ IA RC+ L + LP + D Sbjct: 259 MGTSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGYD---- 314 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR + G G + +RL+ ELNVI M F+GYFLIV DF+++ Sbjct: 315 APGYLRKLCYERI------GPRYGGRPPEGAMERLEHELNVIISMGFAGYFLIVWDFVEF 368 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ IPVGPGRGSGA S+ AY L ITD+DPLR+ LLFERFLNP+R+ MPDFDIDFC +R Sbjct: 369 ARSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYER 428 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV NKYG E VAQ+ITF ++ A+AA+RDVGRAL M Y +VDR+ KL+P + Sbjct: 429 RGEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLPWGQS-- 486 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A+ R + L++ ++ +EG+ R+ S HAAG+VI PL + VP+Y Sbjct: 487 -LDAALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLY 545 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 + + D VTQF+M +++ GL+K DFLGL+TLT++ ++ F+ Q D+ IP DD Sbjct: 546 K-MGDDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVRQYQPDFDIERIPMDDP 604 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ETY ++ TLG+FQ+E+ + L M+P EDIIA +SL RPGP+++I Y K Sbjct: 605 ETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEHIPDYIAGKQ 664 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + +HP ++P+L ET GV++YQEQ++QIA LL+G SL +AD+LRRA+ KK +E+M+ Sbjct: 665 NPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRAIAKKKREDME 724 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K F+ + G S +A +++ + +FA+YGFNK HA YA ++YQTA++K H+PV Sbjct: 725 KYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQTAYLKRHHPVA 784 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AA M M K+ + ++ R+ IQ++PP VNT F I + L A+K +G Sbjct: 785 FMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARFVPDGRTIRFGLGAVKNIG 844 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------SRM 899 I+ A + PF SL D C RVD + LNRR LESL+ AGA D R Sbjct: 845 WNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRVAPPGGRPARRS 904 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQR 957 Q+L++LD I AQ ++++R ++F + + L E+ Sbjct: 905 QMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEFPPQRLLAMEKE 964 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 VLGFY SGHPL Y+ L G G + + MV +Q TR G+ + + Sbjct: 965 VLGFYVSGHPLRQYQAALAAHGCLPVAALPEQRDGARVAVGGMVAGLKQVTTRSGANMAF 1024 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + + E FP Sbjct: 1025 LTLEDQTGQVEVVVFP 1040 >gi|217967773|ref|YP_002353279.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724] gi|217336872|gb|ACK42665.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724] Length = 1127 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 404/1026 (39%), Positives = 630/1026 (61%), Gaps = 27/1026 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++D+ A PA+AITD ++ ++F +KA GI+P Sbjct: 2 SFVHLHVHTEYSLLDGACRIDELIDQAVAFNMPAVAITDHGVMYGVVDFYKKAIEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + ++LL EGY+ LI+LVS +L + Sbjct: 62 IIGCEVYVAPASRFDKKQRTD-----LFHLILLAKDFEGYKNLIKLVSLSFL-EGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L++ ++GL+ L+ +G I N+ + A+ + + +FG+ Y+ LQ + Sbjct: 116 RVDKDLLRQY-SKGLVALSSCLAGEIPTYILQNNIERAKNAIKEYLDIFGEDFYLELQNN 174 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + +++LA +PLVATN+ +L +ED E HD+L+ + + ++ KDR R Sbjct: 175 GMEEQEYVNNYLIRLAKEFNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM+++F D+PEA+ENT +IA RC+ + ++ ILP F E + Sbjct: 235 KTNEFYFKSPDEMINLFKDVPEAIENTFKIAERCNVEIPLNNIILPVFEVPEGE----TL 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ G + R + Q+ ++RL +E++VI +M FSGYFLIV DF+ +A Sbjct: 291 DSYFEKLCWEGAKKRFGEN------IPQEIKERLSYEISVIKQMGFSGYFLIVQDFVNYA 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR Sbjct: 345 KSKGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLI P + Sbjct: 405 EEVIEYVRNKYGREHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLI---PPNTS 461 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A++ R ++P R++EI++++EG RHAS HAAGIVI PL + VP+ Sbjct: 462 IEEALSTSEELRNLVESNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQ- 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + + VTQF M +E+ GL+K DFLGL+TLT++ ++ + + +++D+S I D Sbjct: 521 VMNGNDVVTQFPMTNLEELGLLKMDFLGLRTLTVIYDTVKKIKENYGIEIDISNISLTDE 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y LL T+G+FQLES GMR L ++P+ ED+IA+++LYRPGP+ + Y RK Sbjct: 581 KVYELLQKGDTIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EK+ +HP ++P+L ET GVIIYQEQVM+IA L+G++L +ADVLRRAMGKK E M+ Sbjct: 641 GEEKVEYMHPALEPILSETYGVIIYQEQVMEIAHKLAGFTLGQADVLRRAMGKKKPEVME 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ GA + GI + +AV IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E Sbjct: 701 EQRGIFVKGAVERGIPEEVAVEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKVYYPKE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 ++A+ +T +N K+ K+ +A++ I+I+PP +N VDF V I + L+AIK VG Sbjct: 761 YMASLLTSVKNNTTKLSKYIAEAKRIGIKILPPDINESMVDFTVTPQGIRFGLSAIKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A I+E F S+ DF R+ SK +N+R LESL+ +GA D FGYSR LL ++D Sbjct: 821 ENVAEAIVEEREKGKFKSIFDFIKRLSSKVINKRTLESLIKSGAFDSFGYSRRALLANID 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I + AQ ++K ++ E + I + + E+ +LGFY S Sbjct: 881 KILESAQVIKKAHV-GQVSLIDLEALPQDEFIN--NMPEFSIDEILDMEKEMLGFYVSYD 937 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P + + + K+ ++ + G+ + + ++ + ++ RK ++ + T + E Sbjct: 938 PQEELRKLSEKLFDYTIDDLLEIESGSQVVVPGILKNVREVIDRKNQKMLFATLEDFTGE 997 Query: 1027 YEANFF 1032 E F Sbjct: 998 AEITVF 1003 >gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1147 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 408/1035 (39%), Positives = 615/1035 (59%), Gaps = 19/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL +HS YSLL+GA+ + +++ K A+A+TD N++++ E ++ A Sbjct: 1 MANKGDFVHLHLHSQYSLLDGAIKIKDLVKKAKEYGMSAVAVTDHGNMYASYELYKECTA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I +G +VLL G + L++L S +L + Sbjct: 61 EGIKPIIGQEFYIAKGSRFDR-KKGNEGEKGSYHLVLLAKNEIGLKNLMKLSSIAFL-EG 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L++ +EGLI L+ G I + + A+ +K+LFGD Y+ Sbjct: 119 FYYKPRIDKEVLEKY-SEGLIALSACIQGEIPVLYLQGKEEEAKNVAKWYKELFGDDFYL 177 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H ++ + +++L+ ++ LVATN++ +L +ED+EAHDVL+ + +S + Sbjct: 178 EIQYHGIKEQEKANQFLIKLSKELDIDLVATNDAHYLEKEDWEAHDVLLCLQTGKKLSDE 237 Query: 244 DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R + + Y K+ +EM+ +F ++P A+ NT+++A + ++ +LP++ Sbjct: 238 NRLRFSTKEFYFKDANEMLELFKEVPHAVFNTLKVAEKIDVKIKNTGYLLPKYDVP---- 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ LR A GLE R + I G Q Y QRL EL +I+ M F GYFLIV D Sbjct: 294 PDYTYESYLRELAEKGLERRFKELGITNGEIKQKYYQRLQHELKIISDMGFPGYFLIVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAKKN IPVGPGRGS AGS+ AYA+ ITDIDPLRF+LLFERFLNP+R++MPD D+D Sbjct: 354 FINWAKKNGIPVGPGRGSAAGSLVAYAIGITDIDPLRFNLLFERFLNPERVTMPDIDVDI 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ RD VI+YV++KYG ++V QIITFG+++ K +RDVGR L +P +VD+ KLIPND Sbjct: 414 CQEGRDRVIQYVRDKYGEDKVCQIITFGTMKTKMVVRDVGRVLGIPPKEVDKFAKLIPND 473 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 AI +E + ++ +LL+I+ KL+GL R HAAG+VI L++ Sbjct: 474 AKS--IEDAIDRAPEIKELAQENETISKLLKIASKLQGLARQTGVHAAGVVIAPDTLTKY 531 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601 +P+ + + TQ++M IE GL+K DFLGLKTLT++ K++ + +R +++D I Sbjct: 532 IPLAK-SKDGDITTQYDMGQIESLGLLKMDFLGLKTLTIIDKTIKLIKERHGIEIDTRKI 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659 P DD +T+ LL T+G+FQLES GMR + ++P EDIIALV+LYRPGP+++ + Sbjct: 591 PLDDEKTFKLLQEGNTVGVFQLESQGMRNLMRRLKPSVFEDIIALVALYRPGPLNSGMAE 650 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G E + I P ++P LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGK Sbjct: 651 SYIRRKHGLEPVDYIFPELEPYLKETYGLFIYQEQIMQIANVLAGYSLGEADILRRAMGK 710 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+ M++Q+ FI+ A + G + +F+ +AKFA+YGFNKSH+AAY ++Y TA++ Sbjct: 711 KKKDVMEEQRNIFITRAVERGYPREKVEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYL 770 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP E + ++++ D ++I K +D R+ I + PP VN F + I + L Sbjct: 771 KAHYPKELMTTMLSIDYDKTDEIVKLIKDCRENGIPVFPPDVNKSDALFSIEGKGIRFGL 830 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 A IKGVG A+HI++ + F L DFC RVD K++N++V+ESL+ AGA D G SR Sbjct: 831 AGIKGVGEKAAQHIVKIRKENGEFKDLYDFCERVDLKQVNKKVIESLIKAGAFDSTGISR 890 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L+ LDN AQ ++K ++ N+F +E + + K ++ E E++ Sbjct: 891 AANLEVLDNAMSVAQSLQKTKSKGLMNLFDNETKIVNKE--FPKVREWPDRIKLEYERQA 948 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 +GFY SGHPL YK I++ E + G ++LA + K+T++G V Sbjct: 949 IGFYLSGHPLLEYKDIVQ-FSFDLTSEKDSWKDGQEVKLAGAITEVTTKRTQRGDLWATV 1007 Query: 1019 TFSEPAKEYEANFFP 1033 S+ FP Sbjct: 1008 EISDLEGTVSILVFP 1022 >gi|307265890|ref|ZP_07547439.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919059|gb|EFN49284.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 1145 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 385/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ A++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGAIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSY--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R +++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + V +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDP 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLES GM+Q + ++P +EDIIA +SLYRPGP+D I Y +N Sbjct: 583 KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL D + + + N N ++F + + + + Sbjct: 883 FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|326390936|ref|ZP_08212486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] gi|325992978|gb|EGD51420.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW 200] Length = 1145 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 385/1049 (36%), Positives = 602/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSY--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R ++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKNPG-------KEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + V +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDL 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y +N Sbjct: 583 KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL D + + + N N ++F + + + + Sbjct: 883 FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|167037102|ref|YP_001664680.1| DNA polymerase III DnaE [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115517|ref|YP_004185676.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855936|gb|ABY94344.1| DNA polymerase III, alpha subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928608|gb|ADV79293.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1145 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 384/1049 (36%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R ++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKNPG-------KEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + V +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMGYDDL 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLES GM+Q + ++P +EDIIA +SLYRPGP+D I Y +N Sbjct: 583 KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGIVDEEGNVIVPGALRNGLDEVTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++KI + Q ++ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL D + + + N N ++F + + + + Sbjct: 883 FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|297569370|ref|YP_003690714.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925285|gb|ADH86095.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1192 Score = 843 bits (2177), Expect = 0.0, Method: Composition-based stats. Identities = 426/1036 (41%), Positives = 616/1036 (59%), Gaps = 23/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA+ L+ +L + A+AITD +F ALEF KA AGI+PI Sbjct: 15 FVHLHVHTQYSMLDGAIRLDRLLAQCKEYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 74 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + D + + +VLL EGYQ L++L S + R Sbjct: 75 IGCEFYVAPADRRDKSAKSAGAAAHH--LVLLAMNNEGYQNLMKLASCAQF-EGFHYKPR 131 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L +GLI LT G + A+ +KLF DRLY+ LQ ++ Sbjct: 132 IDYELLSR-HNQGLIALTACLHGQLPMLLTRGDYDGAKAAAGKLQKLFPDRLYLELQENK 190 Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ + +LA +LPLVATN+ +L+ E+ +AH+VL+ + ++ + R R + Sbjct: 191 IAEQQTVNDGLKKLAAELKLPLVATNDCHYLNREEAQAHEVLLCIQTGKTMADQGRFRFS 250 Query: 250 PDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D +EM FS PEA+ TV++A RC+ L + + P F E + E Sbjct: 251 TDELFFKSPAEMKKSFSHCPEAIAETVKVAARCNVELDLSSHHFPHFPIPEGE----TLE 306 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + A GLE R + ++YR RL+ E++VI +M F GYFLIVADFI Sbjct: 307 SVFSKDAREGLEKRFTEIRRLTELTPEQEEEYRARLEHEIDVIIKMGFPGYFLIVADFIN 366 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK + IPVGPGRGSGAGS+ A+A+ ITDIDP+ + L+FERFLN +R SMPDFD+DFCQ+ Sbjct: 367 WAKDHEIPVGPGRGSGAGSLVAWAMRITDIDPMPYGLIFERFLNIERKSMPDFDVDFCQE 426 Query: 426 RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVI YVQ KY G E VAQI+T+GS++A+A +RDVGRAL MPY +VDR+ KLIP + Sbjct: 427 RRGEVIEYVQQKYGGAEHVAQIVTYGSMKARAVVRDVGRALGMPYGEVDRIAKLIPEELG 486 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI + R + +P V LL ++ LEGL RH STHAAG+VI +P+ + +P Sbjct: 487 ITLD-KAIDKEPRLGDLMKREPPVAELLNAARVLEGLQRHTSTHAAGVVISPKPMVEYLP 545 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603 + + +TQ++MK E GLIKFDFLGLKTLT++ ++ + G ++D+ I Sbjct: 546 LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKGDLGREIDIGAIAT 604 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD +TY LL LG+FQLESSGMR L M+P+ D+IALV+LYRPGP+++ + + Sbjct: 605 DDPKTYDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVDDF 664 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N K+G+ P ++P+L+ET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI Sbjct: 665 VNTKHGRMVAKYPLPQLEPILQETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 724 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 MD +K++F++G +KN I A IF+L+AKFA YGFNKSH+AAYA+++YQTAW+K Sbjct: 725 AAVMDAEKDKFMAGCAKNNIDPKKAEYIFDLMAKFAGYGFNKSHSAAYALVAYQTAWLKA 784 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP +F+AA ++ +M N +K+ ++ + ++ I+++PP +N DF V D+RI + LAA Sbjct: 785 HYPAQFMAALLSCDMGNTDKVVRYINECKEHEIEVLPPDINESFRDFTVIDDRIRFGLAA 844 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+E AD P+ SL DFC RVD +K+NRRV+ESL+ AGA D G R Q Sbjct: 845 VKNVGGAALESIIEIREADGPYKSLVDFCQRVDGRKVNRRVIESLIRAGAFDSLGAKRSQ 904 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQR 957 L LD AQ ++++ + ++FA ++ +I L + + E+ Sbjct: 905 LEAILDRALDQAQAAQRDKLSGQISLFAAMPTDQAERATEIELPEMPEWEEKQKLLFEKE 964 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD ++ L + R+ ++ + +++KG + + Sbjct: 965 TVGFYLTGHPLDKHRRELAALTDTDLHGLAEWPDNQPARIGGLIRQFKNHRSKKGDAMAF 1024 Query: 1018 VTFSEPAKEYEANFFP 1033 VT + E FP Sbjct: 1025 VTLEDTVDSVEVVVFP 1040 >gi|261408717|ref|YP_003244958.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261285180|gb|ACX67151.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1241 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 397/1046 (37%), Positives = 612/1046 (58%), Gaps = 32/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ I + +G + ++LL GY+ L++L S +L + Sbjct: 62 PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHL-EGYHYR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L EG+I L+ G + + A+ L ++ +FG+ Y+ LQ Sbjct: 118 PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R Q++QL+ +PLVATN+ +L+E D E DVL+ + V +DR + Sbjct: 177 HGMPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQ 236 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK+ S+M ++ +PEA+ NT +IA +C L+ ILP + K Sbjct: 237 IQTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEYSS---LPEGKN 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR+ ++GL R + + + QRLD+EL VI M FS YFLIV DFI Sbjct: 294 AAEYLRDLCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF + Sbjct: 354 YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 414 RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ VP+ Sbjct: 474 SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 + +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G ++D +P D Sbjct: 533 Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSELDFEQVPDD 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T G+FQLES+G+R+ L+ ++P EDI+++ +LYRPGP++ I + Sbjct: 592 DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + HP + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F+SG+ K G ++ A +++++ +FA+YGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831 V F+A+ +T M + K+ ++ +AR+ +I++MPP VN F Sbjct: 772 VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRTAAEGSDKQA 831 Query: 832 ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL+ Sbjct: 832 DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D R QL+ LD + A K R + +F + D I Sbjct: 892 AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPPYT 950 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 +S + E E+ +LG Y SGHPLD ++ L + G + + +A MVVS + Sbjct: 951 ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTI 1010 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + ++ + + E FP Sbjct: 1011 TTKQGKSMAFMECEDQIERCEVVLFP 1036 >gi|256752386|ref|ZP_05493246.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] gi|256748721|gb|EEU61765.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus CCSD1] Length = 1101 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 390/1049 (37%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R +++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ RGV +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 583 KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++K+ + Q R+ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL + D + + + N N ++F + T S Sbjct: 883 FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031 >gi|189425779|ref|YP_001952956.1| DNA polymerase III subunit alpha [Geobacter lovleyi SZ] gi|189422038|gb|ACD96436.1| DNA polymerase III, alpha subunit [Geobacter lovleyi SZ] Length = 1179 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 429/1042 (41%), Positives = 627/1042 (60%), Gaps = 22/1042 (2%) Query: 5 LE-KSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + SP FVHL +HS YSLL+GA+ + +++ K Q PA+AITD N+F A+EF K Sbjct: 3 MPENSPVTPFVHLHLHSQYSLLDGAIRIEDLVSKAKQYQMPALAITDHGNMFGAVEFYLK 62 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AGI+PIIGC+L I ++G + ++LL EGY+ L L S Y Sbjct: 63 CKKAGIKPIIGCELYIAPDSRFSKDSKGIS--DAAYHLILLCQNLEGYKNLSYLTSAGY- 119 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ + L++ +EGLI L+ G + + A + + +LF DR Sbjct: 120 KEGFYYRPRVDRALLEQ-HSEGLIALSACLKGEVAMQCGRGKMEDALETARWYSQLFPDR 178 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q + ++ +++++A LPLVATN+ +L+ ED +AH+VL+ + + Sbjct: 179 YYIEIQENTLPEQDVVNQRLLEVARELNLPLVATNDCHYLNREDAKAHEVLLCIQTGKTM 238 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S R + + Y+K EM + F PEA+ NTV IA RC+ L + E Sbjct: 239 SDPTHMRFSADEFYVKTPEEMAAAFHYAPEAIANTVAIAERCNLELPLEKEYYFPHFEP- 297 Query: 300 CDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 K ++ L +AV+GLE R A+ G Q Y RL EL+ I +MKF Sbjct: 298 --PEGKTHDDMLEEQAVSGLEERLITIRAKYPDMTGEQVQAYHDRLRTELDCIRQMKFPA 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK+ IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SM Sbjct: 356 YFLIVADFINWAKRQGIPVGPGRGSAAGSLVAYAIKITDLDPLPYNLLFERFLNPERISM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DFCQD+R++VI YV KYG ERV QIITFG+++AKA +RDVGRAL M Y VD++ Sbjct: 416 PDIDVDFCQDQREKVIEYVVQKYGRERVCQIITFGTMKAKAVVRDVGRALDMAYGDVDKI 475 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP+D + +AI + + +E ADP V +LLE + LEGL RHA THAAG+V+ Sbjct: 476 AKLIPDDLKMTIE-KAIKQEPQLKEMAAADPKVAQLLETANCLEGLARHAGTHAAGVVVA 534 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 L + +P+Y+D ++ TQ++MK++E GL+KFDFLGLK LT++Q ++ + + + Sbjct: 535 PNQLEEYLPVYKDQKTGGINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRMIREGQNP 594 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ + DD +Y L+T T GIFQLESSGM++ L ++P C ED+IA +LYRPGP Sbjct: 595 DFDITRLRDDDQASYDLITAGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGP 654 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + +V + RK+G++K+V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+ Sbjct: 655 LGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRADL 714 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK M K+KE F+ GA G+ A IF+ +AKFA+YGFNKSH+AAYA+I Sbjct: 715 LRRAMGKKDPAVMAKEKEPFLEGAKAQGLDIKKAEAIFDQMAKFAEYGFNKSHSAAYALI 774 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++K HYPVEF+AA ++ +MD+ +K+ K D R+ I+++PP +NT F V Sbjct: 775 AYQTAYLKAHYPVEFMAALLSCDMDSTDKVLKSISDCREQGIEVLPPDINTSGQSFTVSG 834 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + + L A+KGVG I+EA AD PF + DFC RVD +++N+RV+E+LV GA D Sbjct: 835 KSMRFGLGAVKGVGGGAVESIIEARADGPFTDIYDFCERVDLRRVNKRVMEALVKCGAFD 894 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSV 950 R L+ +LD+ Q ++ R + ++F + + L + Sbjct: 895 SLHKHRAPLMAALDDATTAGQRFQEERDSAQVSLFGDMPTATATRSGRKLPDIEEWHDKE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LGF +GHPLD Y ++++ +R+ +V S ++ T+ Sbjct: 955 KLGYEKEALGFLITGHPLDRYASDIKRLASAEIARLPEFPDNCEVRVCGIVTSLKEIITK 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 KG R+G+VT + + E F Sbjct: 1015 KGDRMGFVTIEDLTGQIEITVF 1036 >gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1226 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 895/1034 (86%), Positives = 968/1034 (93%), Gaps = 1/1034 (0%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 L Q +E+SP FVHLQVHSSYSLLEGALSLNNILDK ADQQPAIAITDTNNLF ALEFSQ Sbjct: 15 LNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAITDTNNLFGALEFSQ 74 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 KAC AGIQPIIGCQ++IDMQD L++T++GK+ FP +PSIVLLVS AEGYQRLIELVSRMY Sbjct: 75 KACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKAEGYQRLIELVSRMY 134 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 LL+QG +SVRI SWLQEIGTEGLIMLTGGSSG IDRAF FN+ Q+AEKRLL+FK +FG+ Sbjct: 135 LLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQIAEKRLLSFKNIFGN 194 Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 RLYVNLQRHRGYDRYRESQV+QLAY HELPLVATNN+LFLS+EDY+AHDVLMAVAHSTV+ Sbjct: 195 RLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYDAHDVLMAVAHSTVI 254 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 SQ+DRPRVTPDHYLKNR+EM+S+F+DLPEAL+NTVEIARRCSFILQVH PILPRFI+KEC Sbjct: 255 SQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQVHKPILPRFIDKEC 314 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD +K EENELR KA+ GLE RL+QG IAKGY AQDYR+RLDFEL+VIARMKFSGYFLIV Sbjct: 315 DDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELDVIARMKFSGYFLIV 374 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI Sbjct: 375 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 434 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRRDEVI+YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP Sbjct: 435 DFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 494 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 N+PAHPVS QAIADDSRF+EA L DP VDRLLEIS KLEGLYRHASTHAAGIVIGDRPL Sbjct: 495 NNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHASTHAAGIVIGDRPL 554 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 SQL+PMYRDVRSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+LQKSLD L QRG+KVDLS Sbjct: 555 SQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKSLDLLEQRGIKVDLS 614 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 LIPFDDHETYHLLT KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI+NI Sbjct: 615 LIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIENIT 674 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 +YNNRKNGKEKIVSIHPLID +LKETQGVI+YQEQVMQIAQLLSGYSLSEADVLRRAMGK Sbjct: 675 IYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGYSLSEADVLRRAMGK 734 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMDKQKERF+SGASKNG+S +AVNIFELLAKFADYGFNKSHAAAYAVISY+TAWM Sbjct: 735 KIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSHAAAYAVISYRTAWM 794 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI+ PSV T CVDF+VG+ IYYSL Sbjct: 795 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSCVDFEVGEKCIYYSL 854 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AAIKGVGT TA HIM ADKPF+SLEDFCSRVDSK+LNRRVLESL+FAGALDCFGYSR Sbjct: 855 AAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESLIFAGALDCFGYSRE 914 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL QSLDNIQKYAQW+EKNRTN NIF E+G+FS+KI+LE+FSVENSS RFE+E+RVL Sbjct: 915 QLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSVENSSARFEHERRVL 974 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFYFSGHPLDVYK IL+KMGIK YEES+A+++ + IRLA MV+SK+QKKTRKGSRIGWVT Sbjct: 975 GFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKEQKKTRKGSRIGWVT 1034 Query: 1020 FSEPAKEYEANFFP 1033 FSEP KEYE FFP Sbjct: 1035 FSEPDKEYEGIFFP 1048 >gi|297545038|ref|YP_003677340.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842813|gb|ADH61329.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1145 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 385/1049 (36%), Positives = 599/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E ++GLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVDSY--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R ++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + D V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + V +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 583 KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL AD++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702 Query: 727 KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G +NG+ ++ A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++KI + ++ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL D + + + N N ++F + + S Sbjct: 883 FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|289578818|ref|YP_003477445.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9] gi|289528531|gb|ADD02883.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9] Length = 1145 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 385/1049 (36%), Positives = 599/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E ++GLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVDSY--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R ++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + D V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + V +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 583 KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL AD++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702 Query: 727 KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G +NG+ ++ A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++KI + ++ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL D + + + N N ++F + + S Sbjct: 883 FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031 >gi|167039837|ref|YP_001662822.1| DNA polymerase III DnaE [Thermoanaerobacter sp. X514] gi|300915388|ref|ZP_07132702.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307724839|ref|YP_003904590.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513] gi|166854077|gb|ABY92486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514] gi|300888664|gb|EFK83812.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561] gi|307581900|gb|ADN55299.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513] Length = 1145 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 388/1049 (36%), Positives = 602/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + +++ K AIAITD ++ ++F ++A A GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + M ++ +VLL GY+ L+++V+ + + R Sbjct: 62 IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L+E +EGLI L+ +G + + A++ L + +FG Y+ LQ H Sbjct: 118 VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ ++++L+ +PLVATN+ +L ++D +AH+VL+ + + +DR Sbjct: 177 GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM ++FS EA+ENT +IA C+ + + LP++ E D Sbjct: 237 PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LRN GL R +++ +RLD+EL+VI +M + YFLIV DFI++A Sbjct: 294 -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG + VAQIITFG++ A+A +RDVGRAL Y++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYLYAEVDVIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ + + + V +L++IS+ LEGL RHASTHAAG+VI PL VP+ + Sbjct: 466 DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 + D VTQF M +E+ GL+K DFLGL+TLT+++ +++ RGV +D + +DD Sbjct: 525 N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L++ T G+FQLESSGM+Q + ++P +EDIIA +SLYRPGP+D I Y +N Sbjct: 583 KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E IV HPL+ P+L T G ++YQEQVMQI + ++GYSL +D++RRAM KK + M+ Sbjct: 643 HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A +NG+ + A +F+ + FA+Y FNKSHAAAYAVI+Y Sbjct: 703 QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN++K+ + Q R+ I+++PP +N F V +++ Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+K VG I+ + F S+ DF R+ +LN++ +ESL+ AGA Sbjct: 823 IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL + D + + + N N ++F + T S Sbjct: 883 FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004 E+ LG Y SGHPL+ Y + K+ + + +A ++ +K Sbjct: 943 MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +VT + E FP Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031 >gi|83590706|ref|YP_430715.1| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073] gi|83573620|gb|ABC20172.1| DNA polymerase III catalytic subunit, DnaE type [Moorella thermoacetica ATCC 39073] Length = 1156 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 399/1031 (38%), Positives = 604/1031 (58%), Gaps = 27/1031 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA + +++ PA+A+TD ++ A+EF + A GI+P Sbjct: 3 SFVHLHVHSEYSLLDGAGRIKDLVRAAGEMGMPALALTDHGVMYGAVEFYKAAREQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + +VLL + A GY+ L LVS +L + Sbjct: 63 IIGCEVYVAPRSRHDREPH---RDDYQYHLVLLATDATGYRNLTALVSAAFL-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L ++GLI L+ +G + N A + +++FG + Y+ LQ Sbjct: 119 RVDRELLSR-HSQGLIALSACLAGEVPAHLLKNREDAAYEAATWLREVFGPENFYLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++V LA ++PLVATN+ ++ ++ AHDVL+ + + +R R Sbjct: 178 QGLPEQRQLNRRLVDLAARLKIPLVATNDVHYIRQDQARAHDVLLCIQTGKTLDDPNRLR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK+ +EM ++F ++P AL NT+ IA RC F LP + +D Sbjct: 238 FPTAQFYLKSPAEMDNLFREVPSALANTLAIAERCHFDFTFGRLHLPAYQVPAGED---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + GL+ R RQRL++EL +I +M + GYFLIV D + + Sbjct: 294 AASYLRRLSYEGLKRRYPHDDGTA-------RQRLEYELGIIEQMGYPGYFLIVWDMVNF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ IPVGPGRGS AGS+ AY L IT IDPLR++LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 ARRRGIPVGPGRGSAAGSLVAYCLGITSIDPLRYNLLFERFLNPERVSMPDIDMDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI+YV KYG + VAQIITFG++ A+AA+RDVGR L +P +VDR+ K++P + Sbjct: 407 RDEVIQYVLEKYGRDHVAQIITFGTMAARAAVRDVGRVLGLPLGEVDRIAKMVPMELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A +E+ + V LL+ ++ +EG+ RHAS HAAGIVI PL +P+ Sbjct: 467 LE-RALATSPDLKESYEGNREVRELLDTARAIEGMPRHASIHAAGIVITREPLIHYLPLQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDD 605 + D TQ+ M+ +E+ GL+K D LGL+TLT++ G ++DL +P DD Sbjct: 526 K--TGDAVTTQYPMQAVEELGLLKMDLLGLRTLTVIGHAREAIRRNHGRELDLESLPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 TY LL + T GIFQLESSGMR L+ ++P+ EDIIALV+LYRPGP+ + + + Sbjct: 584 RPTYQLLASGETSGIFQLESSGMRAILKELKPERFEDIIALVALYRPGPLGSGMVEDFIK 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G I +HP ++P+LK+T GVI+YQEQVM+IA L+G++L +AD+LRRAMGKK E Sbjct: 644 RKHGVTPISYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGQADLLRRAMGKKKPE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q++RF++GA I + +A IFEL+ FA YGFN SH+AAYA+++YQTA++K HY Sbjct: 704 VLAAQRDRFLAGAEAKAIPRDVAQKIFELMEYFAGYGFNASHSAAYALVAYQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P E + A ++ ++++K++ + + ++ I ++PP VN VDF V +I + LAA+K Sbjct: 764 PAELMGALLSSVAEHLDKMEPYLAECQRLGIAVLPPDVNESGVDFTVTGRQIRFGLAAVK 823 Query: 844 G-VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 I A PF SL DFC RVDS++ N+RV+ESL+ GA + +R QLL Sbjct: 824 NAGRAAALAIIAAREAGGPFTSLLDFCRRVDSRQANKRVVESLIRCGAFNSINPNRRQLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD + A +++R + ++ +D L + + + + E+ +LGFY Sbjct: 884 AGLDECLEVAARRQEDRRSGQVSLMDLVPEEVND-PPLPQVTDFSRADILAMEKELLGFY 942 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHPL+ Y P+L+K+ + G+ + + +V ++ TRKG + +T + Sbjct: 943 LSGHPLEPYAPVLKKLTSHSLADLAEIADGSQVTIGGLVSGLRRLVTRKGDPMAVLTLED 1002 Query: 1023 PAKEYEANFFP 1033 + + EA FP Sbjct: 1003 FSGQVEAVLFP 1013 >gi|329929691|ref|ZP_08283383.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5] gi|328935954|gb|EGG32411.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5] Length = 1242 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 397/1046 (37%), Positives = 612/1046 (58%), Gaps = 32/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ I + +G + ++LL GY+ L++L S +L + Sbjct: 62 PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHL-EGYHYR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L EG+I L+ G + + A+ L ++ +FG+ Y+ LQ Sbjct: 118 PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R Q++QL+ +PLVATN+ +L+E D E DVL+ + V +DR + Sbjct: 177 HGIPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQ 236 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK+ S+M ++ +PEA+ NT +IA +C L+ ILP + K+ Sbjct: 237 IQTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCRLELEFGKSILPEYSS---LPEGKD 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR+ ++GL R + + QRLD+EL VI M FS YFLIV DFI Sbjct: 294 AAEYLRDLCLSGLRERYEGTERWQDEGQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF + Sbjct: 354 YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 414 RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ VP+ Sbjct: 474 SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 + +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G ++D +P D Sbjct: 533 Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLRWIQELTGRELDFDQVPDD 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T G+FQLES+G+R+ L+ ++P EDI+++ +LYRPGP++ I + Sbjct: 592 DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + HP + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F+SG+ K G ++ A +++++ +FA+YGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831 V F+A+ +T M + K+ ++ +AR+ +I++MPP VN F Sbjct: 772 VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSELQA 831 Query: 832 ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL+ Sbjct: 832 DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D R QL+ LD + A K R + +F + D I Sbjct: 892 AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPSYT 950 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 +S + E E+ +LG Y SGHPLD ++ L + G + + +A MVVS + Sbjct: 951 ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTI 1010 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + ++ + + E FP Sbjct: 1011 TTKQGKAMAFMECEDQIERCEVVLFP 1036 >gi|39996502|ref|NP_952453.1| DNA polymerase III subunit alpha [Geobacter sulfurreducens PCA] gi|39983383|gb|AAR34776.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens PCA] gi|298505519|gb|ADI84242.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens KN400] Length = 1155 Score = 839 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 419/1027 (40%), Positives = 612/1027 (59%), Gaps = 14/1027 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ L +++ K+ + PA+AITD +F A+EF K ++P Sbjct: 2 SFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG ++ I +G ++LL GY+ L +LVS + + Sbjct: 62 VIGAEVYIAPGSRFVKEARGGEA-GAGYHLLLLCENMTGYRNLSKLVSIGF-KEGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L E EGLI L+ G + + A + LF DR Y+ LQ + Sbjct: 120 RIDKEVLAE-NAEGLICLSACLKGEVAYLCERDRVAEAVDVARWYADLFPDRYYIELQEN 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++++A LPLVATN+ +L+ ED AH+VL+ + ++ R R Sbjct: 179 GLVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRMRF 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + Y+K EM + F PEA+ NTV+IA RC PRF + + Sbjct: 239 SVDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPPVGLSLDQML 298 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E R + L A+ + Q Y RL EL I +M F GYFLIVADFI WA Sbjct: 299 EEAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVADFINWA 358 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGS AGS+ AYA+ ITD+DP+ ++LLFERFLNP+R+SMPD D+DFCQDRR Sbjct: 359 KDHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVDFCQDRR 418 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV KYG ++V QIITFG++ A+A +RDVGRAL M Y +VDR+ KL+P + Sbjct: 419 EEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPEVLGITL 478 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 IA + + EA ADP V LLE++ +LEGL RHASTHAAG+V+ L Q P+Y+ Sbjct: 479 EKA-IAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLEQFCPVYK 537 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606 D +S TQ++MK++EK GL+KFDFLGLK LT++ ++ A + D++ + DD Sbjct: 538 DQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIAALRDDDE 597 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 E+Y LL T G+FQLESSGMR+ L ++P C EDIIA+ +LYRPGP+ + + + +R Sbjct: 598 ESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIDR 657 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G++K+V P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK E Sbjct: 658 KHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAMGKKDPAE 717 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ++ F+ GA NGI A IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K HYP Sbjct: 718 MAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYP 777 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEF+AA +T +M N +K+ K D R+ I+++PP +N + F+V N I + L A+K Sbjct: 778 VEFMAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRFGLGAVKN 837 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + I+EA D PF + +FC RVD +K+N+RV+ESL+ GA D G R QL + Sbjct: 838 VGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGRRSQLTAA 897 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENEQRVL 959 L++ Q +++ + + ++F E+ G K+ L + E+ L Sbjct: 898 LEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLLAQEKEAL 957 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ +GHPL ++ +R+ + +++ +V + ++ T+KG R+ + T Sbjct: 958 GFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKGDRMAFAT 1017 Query: 1020 FSEPAKE 1026 + Sbjct: 1018 LEDLVGS 1024 >gi|297617868|ref|YP_003703027.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297145705|gb|ADI02462.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1131 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 400/1030 (38%), Positives = 611/1030 (59%), Gaps = 25/1030 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YSLL+GA+ +++++ + PA+AITD L+ ++F ++A AGI+PI Sbjct: 4 FVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + T + + + LL +GY+ L+++VS+ +L + R Sbjct: 64 IGCEVYVAPRHRFDRTPK---VDDALYHLTLLCENQDGYRNLVQMVSKAFL-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 + L++ G GLI L+G +G + + + A F+++FG+ ++ +Q H Sbjct: 120 VDKELLEQHGR-GLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQDH 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + L+ ++PLVATN+ +L+ +D HDVL+ + V++ + R R Sbjct: 179 GLSEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDESRMRF 238 Query: 249 TPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + EM S+F+ +PEA+ NTV IA RCS + LP F E Sbjct: 239 PCPEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPEG----ATA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ L + A L R A RL EL+VI RM F+GYFLIV D + WA Sbjct: 295 ESYLEDLAWKKLRERFAHPGT-------KVIDRLRLELDVINRMGFAGYFLIVQDLVHWA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K I VGPGRGS AGS+ +Y L ITDI+PL + LLFERFLNP+R++MPD DIDFC ++R Sbjct: 348 KNRGIRVGPGRGSAAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDFCFEKR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI YV KYG +RVAQIITFG++ A+AA+RDVGR L+ PYS+VDR+ K++P + + Sbjct: 408 DQVINYVIEKYGSDRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAELGISL 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + EA D V RL++ ++ LEG RHAS HAAG+VIG LS+++P+ R Sbjct: 468 DRA-LEVSGDLAEAYKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSRVLPLQR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 VTQF + +E+ GL+K D LGL+TLT++ + LD + + RG ++D+ I DD Sbjct: 527 TA-DGHVVTQFTKETVEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDHISLDDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +TY LL+ T+G+FQLES G+R+ L+ ++P ED+IA+++LYRPGP+ + + + NR Sbjct: 586 DTYRLLSEGDTVGVFQLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMVEDFVNR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G++ I +HP ++P+L+ET GVI+YQEQVM+IA L+ +S+ EADVLRRAMGKK +E Sbjct: 646 KHGRQPIEYLHPKLEPILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMGKKKPDE 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+ +F+ GA +NGI + A ++FEL+ FA YGFNKSH+AAYA++SYQTA++K HYP Sbjct: 706 LAAQRNKFVEGAYRNGIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAYLKAHYP 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VE++ A +T +DN +++ + ++ R+ + I+PP +N +F V RI + L AIK Sbjct: 766 VEYMCAFLTSVIDNQDRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFGLGAIKN 825 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG R I+EA + F SL +FC RVD ++LN+RV+E+L+ AGA D G R + L Sbjct: 826 VGINAVRSIIEARKEGRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKRKEALSL 885 Query: 905 LDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD A V + ++F T + + + E+ VLGFY Sbjct: 886 LDECLALAVEVRAAMDSAQPSLFVDDAAATVVQDPVPRSKGEFSVQEKLKKEKEVLGFYV 945 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S +PL+ Y+ ++ + E G +R+ A V + ++ +++KG + + Sbjct: 946 SQNPLEEYREVIPYLMSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEPWARLVLEDF 1005 Query: 1024 AKEYEANFFP 1033 + EA FP Sbjct: 1006 TGKVEAVVFP 1015 >gi|295100819|emb|CBK98364.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium prausnitzii L2-6] Length = 1170 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 374/1045 (35%), Positives = 585/1045 (55%), Gaps = 40/1045 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA ++ ++D++ Q AIAITD ++ ++F + A AGI+P Sbjct: 13 DFVHLHIHTEYSLLDGACRIDQLMDRVKECGQSAIAITDHGVMYGCVQFYKAAKKAGIKP 72 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + N+ ++LL GY+ LI++VS + ++ Sbjct: 73 VIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF-VEGFYSKP 127 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EGLI L+ +G I +A + A+ L ++ LFG Y+ LQ Sbjct: 128 RVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKSTALWYQDLFGKGNYYIELQD 186 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D Q+++LA +P+ ATN+S +L ++D + +L+ + + DR Sbjct: 187 HGLEEDTIVLPQLIKLARETGIPMAATNDSHYLRKDDAKMQSILLCIQTGKTIQDADRME 246 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y+K EM +F+ +PEA NT +IA +C+F +P + D Q Sbjct: 247 FRTDEFYVKTTDEMYELFAMVPEACANTQKIADQCNFDFDFGHTKIPYYKAPNGMDNQ-- 304 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 GLE R Q + RL +E+ V+ M ++ Y+LIV D+I + Sbjct: 305 --EFFEKLCWDGLERRYGSDV------PQSNKDRLTYEIGVVKSMGYTNYYLIVWDYINY 356 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +R Sbjct: 357 AKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYER 416 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + MPY VD + K +P + Sbjct: 417 RQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQSVDVVAKQVPMELKMT 476 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + +DP V L++ + K+EG+ RHASTHAAG+VI P +P+ Sbjct: 477 LKRA-LEVSPELKRMYDSDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPL- 534 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ + + +DD Sbjct: 535 -ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEAAVQKKDPSFSIQKLDYDDA 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+I Y ++ Sbjct: 594 ATYKMLGQGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRH 653 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM KK M+ Sbjct: 654 EPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVME 713 Query: 727 KQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 ++E F+ G ++ G S+ +A I++ ++ FA Y FNKSHAA YA +++QT Sbjct: 714 AEREHFVHGCTEPGHECPGCVANGISEEVANEIYDEMSSFASYAFNKSHAACYAYVAFQT 773 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP EF+AA +T +DN +K+ ++ + + ++++PP VN F + +I Sbjct: 774 AYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGLKVLPPDVNISNGGFTADNGKIR 833 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + L A+K VG ++E +KP+ SL DFC R+ +LNRR +E L+ AGA D G Sbjct: 834 FGLNAVKNVGRNLIERVVEERKEKPYSSLYDFCKRMHGTELNRRAVECLIKAGAFDSMGV 893 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRF 952 +R L++++D I K + + ++F + +D ++ F + + Sbjct: 894 NRHSLVEAVDGIIKSVESDSRRNLEGQLDLFSVMSGESQTADTDSYEIKPFPEYSHTELL 953 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKK 1008 + E+ V G Y SGHPLD Y+ + +E + GN++R+ VV + Sbjct: 954 QQEKEVSGLYLSGHPLDAYREQSARFASNSIKELTGEDAHKLDGNHVRIVCTVVKNRMMT 1013 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + + + + + E FP Sbjct: 1014 TKSNTMMAFTSVEDLTGTMEVIVFP 1038 >gi|134300158|ref|YP_001113654.1| DNA polymerase III DnaE [Desulfotomaculum reducens MI-1] gi|134052858|gb|ABO50829.1| DNA polymerase III catalytic subunit, DnaE type [Desulfotomaculum reducens MI-1] Length = 1225 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 399/1048 (38%), Positives = 613/1048 (58%), Gaps = 44/1048 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA +N + + ++AITD +F ++F + G++PI Sbjct: 12 FVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGVKPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + T + +VLL EGY+ L++LVS Y + R Sbjct: 72 LGCEVYVAPRRRIDRTPK---LDDQPNHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKPR 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + LQ +GLI L+ +G + + + A + + +FG D ++ LQ H Sbjct: 128 VDKELLQRYH-KGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDH 186 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++A ++PLVATN+ +L E E DVL+ + ++ R + Sbjct: 187 GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKF 246 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM +F+++P+AL NT+ IA RC L+ LP F E + Sbjct: 247 ESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPE----ESSP 302 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR K + G R + ++RL++ELNVI +M + YFLIV DFI +A Sbjct: 303 AQYLREKCLEGAIKRYGHCSGP-------VQERLEYELNVIGKMGYDEYFLIVWDFIHYA 355 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I VGPGRGS AGS+ +YAL IT+IDPL++ LLFERFLNP+R+SMPD DIDF +RR Sbjct: 356 RQKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERR 415 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI Y+ KYG +RVAQIITFG++ A+AA+RDVGRAL MPY VDR+ KL+P + + Sbjct: 416 GEVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITI 475 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + A DP V RL++ + LEG+ RHASTHAAG+VI PL + +P+ + Sbjct: 476 -AKALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSK 534 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 L TQF M +E+ GL+K D LGL+ LT++ ++++ + Q + K+D++ IP DD Sbjct: 535 TS-DGLVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIKETKLDINTIPLDDQ 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 T+ +LT +G+FQLESSGMR L ++P+ EDI+ALV+LYRPGP+ + + + R Sbjct: 594 ATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFIQR 653 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ K+ HP ++P+LKET GVI+YQEQVM IA++++GYSL +AD LR+AMGKKI + Sbjct: 654 KHGQNKVDYFHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMGKKIAKI 713 Query: 725 MDKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M ++ F I GA G S+ +A +F+L+ FA YGFNKSH+AA Sbjct: 714 MGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFNKSHSAA 773 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQTA++K +YPVE++AA +T DN +K+ + + R+ IQ++PP +N +F Sbjct: 774 YALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDINLSRENF 833 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I + +AA+K VG + I++ PF D C R+D++ NRRVLESL+ Sbjct: 834 TAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRRVLESLIK 893 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSV 945 AGALD FGY R QLL LD ++A +++R ++F + + ++ L Sbjct: 894 AGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMELKLPHVPR 952 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 S + E E+ LG Y SGHPL + +L ++ ++ GNN+ +A ++ + + Sbjct: 953 LTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPDGNNLLVAGIISTIK 1012 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +RKG + ++T + E FP Sbjct: 1013 RITSRKGDPMAFLTLEDLTGSCEVVVFP 1040 >gi|304316261|ref|YP_003851406.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777763|gb|ADL68322.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1144 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 387/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + ++ + +IAITD ++ A+EF ++A + GI+PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKELVKRAKELDMDSIAITDHGVMYGAIEFYKEAKSQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL GY+ L+++VS+ + D R Sbjct: 62 IGCEIYVAPRSLYDKEYGIDNL---NYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +L + +EGLI L+ G I + + A+ + + +FG Y+ LQ H Sbjct: 118 VDHEYL-KNHSEGLIALSSCLGGEIPSYLLSDDYEKAKDTAILYNSIFGKGNFYLELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 ++ S++++L+ ++P+VATN+ +L +D+ AH+VL+ + + DR Sbjct: 177 GLSEQEKVNSELIKLSKELDIPIVATNDVHYLDRDDHMAHEVLLCIQTGKNMDDADRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +FS EALENT +IA C+ + + LP++ Sbjct: 237 PTDEFYLKSSDEMYEMFSYCREALENTEKIAEMCNLEFEFNKTKLPKYDVPNGM----TS 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR + G+ R A +++ +RL++EL+VI +M + YFLIV DFI++A Sbjct: 293 AEYLRKLCIEGVNKRYAN-------PSKEVIERLNYELSVIEKMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + N I GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG ++VAQIITFG++ A+AA+RDVGRAL PY++VD + K+IP +P + Sbjct: 406 QEVIDYVVKKYGEDKVAQIITFGTMAARAAIRDVGRALNFPYAEVDAIAKMIPFEPGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AI + +E D + +L+EIS+ LEGL RHASTHAAG+VI PL + VP+ + Sbjct: 466 D-KAIGLNPELKEKYENDEKIRQLIEISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + VTQF M +E+ GL+K DFLGL+TLT+++ +L+ + + R + VD+ I F+D Sbjct: 525 N--EGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLNIIKETRSIDVDIDNIDFEDK 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E Y L++ T G+FQLESSGM+Q + ++P+ +EDIIA +SLYRPGP+D I Y KN Sbjct: 583 EVYALISKGDTEGVFQLESSGMKQFMTELKPEKLEDIIAGISLYRPGPMDQIPRYIENKN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E I HPL+ P+L T G ++YQEQVMQI + L+GYSL +D++RRAM KK + M+ Sbjct: 643 HPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA G+ + A +F+ + FA+Y FNKSHAAAYAV+++ Sbjct: 703 EERKNFIYGIKDESGNYVVPGAINKGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN +K+ + Q ++ IQ++PP +N F V + + Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKMGIQVLPPDINESYSHFSVVNGK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG I+E + + S+ DF R+D +LN++ +ESL+ AGA D Sbjct: 823 IRFGLAAVKNVGLNATLEIVEDRKKNGRYISIVDFFERIDDMQLNKKAVESLIKAGAFDS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL ++I + ++F E +L + + Sbjct: 883 FGVYRSQLLAVYEDIMDSIHKNRERNIKGQMSLFGSEIERNEVNYSLPDIKEFSQDMILS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIRLAAMVVSK 1004 E+ +G Y SGHPLD ++ ++++ + ++ LA ++ SK Sbjct: 943 MEKETMGLYISGHPLDEFQEDIQRVANCTTRDLKNGDDTFVKKSIFDNQDVVLAGIIESK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +V + + FP Sbjct: 1003 KIKFTKNNNMMAFVNLEDLYGTIDVIVFP 1031 >gi|313114111|ref|ZP_07799663.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310623520|gb|EFQ06923.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 1169 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 376/1056 (35%), Positives = 593/1056 (56%), Gaps = 42/1056 (3%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ L + FVHL +H+ YSLL+GA ++ ++D++ Q AIA TD ++ ++F + Sbjct: 1 MSEALPNTRPFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PIIGC++ + + N+ ++LL GY+ LI++VS + Sbjct: 61 AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ RI L++ EGLI L+ +G + +A + A+ L ++ LFG Sbjct: 117 -VEGFYSKPRIDKELLEKYH-EGLICLSACLAGEVPQAILAGDYERAKAAALWYRDLFGE 174 Query: 180 DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ LQ H + Q+++LA +P+ ATN+S +L +ED + +L+ + Sbjct: 175 ENYYIELQDHGLEEDNTVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQGILLCIQTGK 234 Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + D+ T + Y+K EM +FS +PEA ENT +IA +C+F +P + Sbjct: 235 TIQDADKMEFQTDEFYVKTTDEMYELFSMVPEACENTAKIAEQCNFDFDFGHTKIPYYKA 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 D Q GLE R Q + RL++E+ V+ +M ++ Y+ Sbjct: 295 PNGMDNQ----AFFEKLCWEGLERRYGPDV------PQANKDRLEYEIGVVKKMGYTNYY 344 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D++ +AK IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPD Sbjct: 345 LIVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPD 404 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC +RR EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K Sbjct: 405 FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +P + + +A+ + DP V L++ + K+EG+ RHASTHAAG+VI Sbjct: 465 QVPMELKMTLK-RALEVSPELKRMYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 P +P+ LPVTQFNM IE+ GL+K DFLGL+TLT++ + + + + Sbjct: 524 PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIHDAETAVQKHHPEFS 581 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + + +DD +TY +L T G+FQLESSGM+Q L G+QP +EDIIAL+SLYRPGP+D+ Sbjct: 582 IQKLDYDDPDTYRMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDIIALISLYRPGPMDS 641 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y ++ +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM Sbjct: 642 IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701 Query: 718 GKKIKEEMDKQKERF----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 KK M+ ++E F G NGIS+ +A I++ ++ FA Y FNKSHAA Sbjct: 702 SKKKHAVMEAEREHFVYGCTDPGNECPGCVANGISEKVANEIYDEMSSFASYAFNKSHAA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA +++QTA++K HYP EF+AA +T +DN +K+ ++ + + I+++PP VN Sbjct: 762 CYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNVSNGG 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F +I + L A+K VG ++++ +KP+ SL DFC R+ +LNRR +E L+ Sbjct: 822 FTADGSGQIRFGLNAVKNVGRNLIENVVKGRQNKPYTSLYDFCKRMHGNELNRRAVECLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLE 941 AGA D G +R +++++ I K + + + ++F+ + G D ++ Sbjct: 882 KAGAFDHLGNNRHSHVEAVEGILKSIETDSRRNLDGQLDLFSVMSGEAQGGASEDNYEIK 941 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997 + + + E+ V G Y SGHPLD Y+ ++ ++ G +R+ Sbjct: 942 QLPEYSHKELLQQEKEVSGLYLSGHPLDAYREQSARIASHTIKDLTGEDAHVRDGEKVRI 1001 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VV + T+ S + + + + E FP Sbjct: 1002 VCAVVKSRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|218778784|ref|YP_002430102.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans AK-01] gi|218760168|gb|ACL02634.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans AK-01] Length = 1168 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 411/1034 (39%), Positives = 604/1034 (58%), Gaps = 22/1034 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL VH+ YSLL+GA+ L+ ++++ A AITD +F LEF +KA + I+ Sbjct: 2 SDFVHLHVHTQYSLLDGAIRLDALVNQCKEFGMDACAITDHGTMFGILEFYEKAKSKDIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ + + T K +VLL +GY+ L L + Sbjct: 62 PIIGCECYVARKSMEDKTPMDKDNR----HLVLLAENNQGYENLCRLATLAQRK-GFYYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+E ++GLI L+ G I ++AE+ L +K LFG D Y+ +Q Sbjct: 117 PRIDKKALEE-HSKGLICLSACLHGEIPMYISDGQMKLAEESALYYKNLFGPDHFYLEIQ 175 Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + + ++ +LA ++PLV TN+ +L +D +AH+VL+ + + + +R Sbjct: 176 NNGLPEQEEMNQKLAELAEKLDIPLVGTNDCHYLRAKDAKAHEVLLCIQTNKTIHDTNRF 235 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + T YLK+ EM+ F P A +NTV+IA C+ + P+F +E K Sbjct: 236 KFRTDQLYLKSPQEMIEYFKGFPGATDNTVKIAEMCNVEFDLSTFHFPQFPTEEG----K 291 Query: 306 EEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E L G A A+ + Y +RL +EL VI M F GYFLIV+DFI Sbjct: 292 TEAEILTQMTWDGFHKRMDAIKAVNPAVDEEKYLERLKYELGVIQDMGFPGYFLIVSDFI 351 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QW+K+N IPVGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP R SMPD D+DFC Sbjct: 352 QWSKRNGIPVGPGRGSAAGSLVAYALEITDLDPLEHKLIFERFLNPGRKSMPDIDVDFCI 411 Query: 425 DRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R+ YV KY G + V+QI TFGS+ A+A +RDVGRA+ +P +VD + KLIP P Sbjct: 412 LGRERTFNYVVEKYGGGDYVSQITTFGSMNARAVVRDVGRAMAIPLGEVDVIAKLIPEAP 471 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + + E P + L+E++Q LEGL RHASTHAAG+VI D+PL + + Sbjct: 472 KMTLK-KAMEQEPKLLEIMKDKPEIAELIEVAQVLEGLSRHASTHAAGVVIADKPLVEYL 530 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602 P+Y + + VTQF+MK +EK GL+KFDFLGL+ LT++ ++ + Q DL + Sbjct: 531 PLY-EGKKGEVVTQFDMKRVEKIGLVKFDFLGLRNLTVIDNAIKLIEGQGKTPPDLMHLD 589 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 D TY+LL+ T G+FQLESSGM+ L ++P+C ED++A+V+LYRPGP+++ + Sbjct: 590 VTDKATYNLLSRGDTTGVFQLESSGMKDLLARLKPECFEDVVAVVALYRPGPLNSGMVDD 649 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G + P ++P+LK+T GVI+YQEQVMQIA L+ YS+SEAD LR+AMGKK Sbjct: 650 FVKRKHGDIPVTYALPELEPILKDTYGVIVYQEQVMQIAAALASYSMSEADDLRKAMGKK 709 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I E+M +Q+ RF+ G +N + A +F L+ KF +YGFNKSH+AAYA++S+QTA++K Sbjct: 710 IAEKMAQQRIRFMDGCKENNVDLKKAEALFNLMEKFGEYGFNKSHSAAYALVSFQTAYLK 769 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 TH+ VEF+A+ MT EMDN + + KF + R +I+++PP VNT V F V + +I Y +A Sbjct: 770 THFQVEFMASLMTSEMDNTDNVLKFMSECRDHDIEVLPPDVNTSSVSFTVLEGKIVYGMA 829 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKGVG I+E + PF+++ D C RVD +++N+RVLESLV AGA D G R Sbjct: 830 AIKGVGQGAVEAIVEERKANGPFENIFDLCERVDLRRVNKRVLESLVKAGAFDSTGAKRS 889 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL+ L++ + Q + K + + +F + + L + ++ E+ L Sbjct: 890 QLMAVLESAIDHGQRISKEKNDPQMGLFGAIE-MPTITPALPDIEEWDDQLKLSYEKEAL 948 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ +GHPL Y+ IL K + +R+ M++S + T+KG + ++T Sbjct: 949 GFFLTGHPLGKYEDILIKFANADTLTLPEMPDKSAVRVGGMILSTKNLVTKKGDPMAFIT 1008 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 1009 LEDMKGSVEVVVFP 1022 >gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM 11109] gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM 11109] Length = 1150 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 416/1035 (40%), Positives = 609/1035 (58%), Gaps = 17/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL VH++YSLL+GA+ LN+++D + + PA+AITD N+F +EF KA Sbjct: 1 MA-TPGFVHLHVHTAYSLLDGAIRLNDLIDTALSMEMPAVAITDHGNMFGVVEFYTKAEK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIGC+L + L+ + + +VLL GYQ L++LVS+ L + Sbjct: 60 AGLKPIIGCELYVAPGSRLEKSGK----KGDNYHLVLLAENLTGYQNLLKLVSKANL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ L + EGLI L+ G + + + AE + ++F R Y+ Sbjct: 115 FYYKPRVDRELLAD-HAEGLIALSACLHGVVAAHVVADDLKTAEIAAREYGEIFPGRFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q + ++ + ++++A LP+VATN+ +L ED AHDVL+ + ++ Sbjct: 174 EVQANDLTEQQKVNAALLEMAPRLGLPVVATNDCHYLRPEDARAHDVLLCIQTGKTINTT 233 Query: 244 DRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + D +M + F D P+ LE ++EIA RC L + P F + Sbjct: 234 KRMRFSTDQLFFKSPVQMAAAFPDRPDLLEASLEIANRCQLELPLGEFHFPVFPLENGQT 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ + + E R L GA Q YR R++ EL ++ +M F+GYFL+VAD Sbjct: 294 MEAQLQQEARRGLEHRLHQWQLSGAWPMEKI-QHYRARMEEELALLCQMGFAGYFLVVAD 352 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A+K +IPVGPGRGS AGS+ A AL ITD+DP+ + L FERFLNP+R SMPD D+DF Sbjct: 353 FIRYARKRHIPVGPGRGSAAGSLVACALEITDLDPIAYGLFFERFLNPERKSMPDIDVDF 412 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR E+I YV KYG E V QIITFGS++ + +RDVGRAL +PY + D++ KL+P+ Sbjct: 413 CFERRGEIIDYVARKYGKEHVGQIITFGSMKTRQVIRDVGRALDLPYPEADKIAKLVPDV 472 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + A+ + R REAR AD ++ +L I+ LEGL RHASTHAAG+VI D+PL Sbjct: 473 LKINL-RTALEKEPRLREARDADENIREVLTIAAALEGLPRHASTHAAGVVIADKPLWCY 531 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLI 601 +P+Y+ D +TQF MK +EK GLIKFDFLGL+TLT+L+ + Q+ D + Sbjct: 532 LPLYKG-NKDEIITQFEMKGVEKVGLIKFDFLGLRTLTVLETAAQIVRRQKDKNFDYRQL 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D T+ LL + T G+FQLESSGMR+ L ++P C ED+IALV+LYRPGP+++ +V Sbjct: 591 PLEDAATFELLRSGNTAGVFQLESSGMREKLVQLRPTCFEDLIALVALYRPGPLESGMVD 650 Query: 662 NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K + + P ++P+LKET G+I+YQEQVMQIA ++SGYS+ EAD+LRRAMGK Sbjct: 651 DFIKRKHGELNVTYELPELEPILKETYGIILYQEQVMQIAGIISGYSMGEADILRRAMGK 710 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K M QKERF SGA G A +F L+ KFA YGFNKSH+AAYA I+YQTA++ Sbjct: 711 KEPAVMAAQKERFCSGAVSRGFPLAKAEKLFHLIEKFAGYGFNKSHSAAYAYITYQTAYL 770 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP+EFLAA T E+++ + K Q+AR+ I ++PPS+N DF V ++I + L Sbjct: 771 KAHYPLEFLAALFTSEINSPTTLTKHIQEAREDGIVLLPPSLNASERDFTVEGSQIRFGL 830 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A +K VG + I+EA PF SL +F R + K+N++VLESL+ AGALD G +R Sbjct: 831 AGVKNVGDNAIKAILEARKKGPFISLGNFLERANQTKVNKKVLESLIQAGALDFLGINRA 890 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 +L ++ + AQ K + + ++F E L + + E+ Sbjct: 891 RLFGGVEAALERAQVALKLQAARQMDMFGGLGEADLGEGDDWLPPVPEWDEQEKLAREKE 950 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y SGHPL Y+ L+ + ++ + L ++V+ ++ T+KG R+ + Sbjct: 951 ALGIYLSGHPLAKYRQQLQALTDLTIDDLAEKPENGPVLLGGLIVAVKETMTKKGERMAF 1010 Query: 1018 VTFSEPAKEYEANFF 1032 T + E F Sbjct: 1011 ATLEDQVGSVEVVVF 1025 >gi|206901842|ref|YP_002251105.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12] gi|206740945|gb|ACI20003.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12] Length = 1127 Score = 835 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 401/1026 (39%), Positives = 626/1026 (61%), Gaps = 27/1026 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++D+ PA+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + ++LL EGY+ LI++VS +L + Sbjct: 62 IIGCEVYVAPGSRFDKKQRTD-----LYHLILLAKDFEGYKNLIKIVSLSFL-EGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L+E ++G+I L+ +G I N+ + A+ + + +FG+ Y+ LQ + Sbjct: 116 RVDKELLREY-SKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNN 174 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ S +++L+ +PLVATN+ +L +ED E HD+L+ + + ++ KDR R Sbjct: 175 GMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y K+ EM ++F D+P+A+ENT++IA +C+ + ++ ILP F E + Sbjct: 235 KTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGE----TL 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ G + R + ++ R+RL +E++VI +M FSGYFLIV DF+ +A Sbjct: 291 DSYFERLCWEGAKKRFGED------IPENIRERLSYEISVIKQMGFSGYFLIVQDFVNYA 344 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR Sbjct: 345 KSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLI P + Sbjct: 405 EEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLI---PPNTS 461 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ R +P R++EI++++EG RHAS HAAGIVI PL + VP+ Sbjct: 462 IEEALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQ- 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + VTQ M +E+ GL+K DFLGL+TLT++ ++ + + +++D++ I D Sbjct: 521 VMNGTDVVTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDE 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y LL T+G+FQLES GMR L ++P+ ED+IA+++LYRPGP+ + Y RK Sbjct: 581 KVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+EK+ +HP ++P+L ET GVIIYQEQVM+IA L+G++L +ADVLRRAMGKK E M+ Sbjct: 641 GEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVME 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ F+ GA + GI + +A+ IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E Sbjct: 701 EQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 ++A+ +T ++ K+ K+ +A++ I+I+PP VN VDF V I + L+AIK VG Sbjct: 761 YMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + A I+E + F S+ DF R+ SK +N+R LESL+ +GA D FGYSR LL+++D Sbjct: 821 ESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENID 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I + AQ V K ++ E + I + E E+ +LGFY S Sbjct: 881 KILESAQ-VMKRAHIGQVSLIDLESLPQEEIIN--NMPEFSIDEILEMEKEMLGFYVSYD 937 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P + + I K+ ++ V G+ + + ++ + ++ RK ++ + T + E Sbjct: 938 PQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGE 997 Query: 1027 YEANFF 1032 E F Sbjct: 998 AEITVF 1003 >gi|125973779|ref|YP_001037689.1| DNA polymerase III DnaE [Clostridium thermocellum ATCC 27405] gi|281417936|ref|ZP_06248956.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] gi|125714004|gb|ABN52496.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium thermocellum ATCC 27405] gi|281409338|gb|EFB39596.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20] Length = 1181 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 383/1068 (35%), Positives = 601/1068 (56%), Gaps = 62/1068 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + +VLL GY+ L+++VS + + R Sbjct: 65 LGCEIYTAKGSRFDKQGGWDSDPG---HMVLLAKNNTGYKNLMKIVSIGFT-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L++ +EGLI ++ SG I +A N+ + A++ L +FG D Y+ LQ + Sbjct: 121 VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++L+ +PLVATN++ +L ED AH++L+ + ++ +DR R Sbjct: 180 GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D Y+K+ EM+S+F ++PEA+ NTV IA C+ L+ + LP+F + K+ Sbjct: 240 SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G E + ++ RL++EL+VI +M + YFLIV+DFI++A Sbjct: 296 FEYLRALCYEGFERIYGKDNRD-----EEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ I VGPGRGS AGS AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 351 KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RVAQIITFG++ A+A +RDVGRAL +PY +VD + K+IP + Sbjct: 411 QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDIPYGEVDAIAKMIPFQIGMSI 470 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + R+ D V L++ ++ LEG+ RHASTHAAG+VI PL++ VP+ R Sbjct: 471 E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D TQF M +E+ GL+K DFLGL+TLT+++ ++ + + + V + + DD Sbjct: 530 S--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L+ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y KN Sbjct: 588 NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E + HPL++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK M+ Sbjct: 648 NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSVME 707 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA +NG+ + A IF+ + FA Y FNKSHAAAYAVI+Y Sbjct: 708 QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YPVEF+AA + M + +KI ++ + R+ I+++PP +N V F V + + Sbjct: 768 QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG R I++ + + S +F RVD K +N+R +ESL+ +GA D Sbjct: 828 IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941 G R +L+ + + + + K +IF T D+ Sbjct: 888 MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------- 986 + + E+ +LG Y SGHPL ++ ++ ++ Sbjct: 948 DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007 Query: 987 -VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S++ K T+ + + +VT + E FP Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055 >gi|315648837|ref|ZP_07901932.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453] gi|315275805|gb|EFU39157.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453] Length = 1143 Score = 834 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 398/1046 (38%), Positives = 608/1046 (58%), Gaps = 32/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA + +++ + AA ++A+TD ++ A+ F + A GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAIPFYKACLAQGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ I + +G + ++LL GY+ L++L S +L + Sbjct: 62 PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNEVGYRNLMKLSSIGHL-EGYHYR 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L EG+I L+ G + + A+ L ++ +FGD Y+ LQ Sbjct: 118 PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGDDYYLELQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R Q++ L+ +PLVATN+ +L+EED E DVL+ + V +DR + Sbjct: 177 HGIPEQKRVNPQLIALSRETGIPLVATNDVHYLTEEDAEVQDVLICIGTGKTVEDEDRLQ 236 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK+ SEM ++ +PEA++NT +IA +C+ L+ ILP + K Sbjct: 237 IQTNQLYLKSGSEMERLYPHVPEAIQNTAKIADQCNLELEFGKSILPEYSS---LPEGKN 293 Query: 307 EENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G E + QRL++EL VI M FS YFLIV DFI Sbjct: 294 AAEYLRELCLNGLQERYGITERWQDEALRSELEQRLNYELGVIENMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF + Sbjct: 354 YAHRQGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ VD+ KLIPN Sbjct: 414 RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+ + +E P V L++++ K+EG+ RHASTHAAGIVI PL+ VP+ Sbjct: 474 SI-AKAMEQSPQLKEQYETRPKVRELIDMAMKVEGMPRHASTHAAGIVISRDPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 + +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G +D IP + Sbjct: 533 Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGGALDFEQIPDN 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T G+FQLES+G+R+ L+ ++P EDI+++V+LYRPGP++ I + Sbjct: 592 DGNTYEMLGRGETTGVFQLESAGVRRVLKDLKPSAFEDIVSVVALYRPGPMEFIPRFIQV 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ H + P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGQIDPEYPHEDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D+++ F+SG+ K G S+ A +++++ +FA+YGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDRERSHFVSGSLKLGYSEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831 V F+A+ +T M + K+ ++ +AR+ +I++MPP VN F Sbjct: 772 VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVVSQSESGSLDEGS 831 Query: 832 ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I + LAAIK VGT +I+E +KPF+SL DFC RVD + N+RV+ESL+ Sbjct: 832 HHFTEGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D R QL+ LD + A K R + +F + T D I Sbjct: 892 AGAFDSLPGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVEATNWD-IEYPDIPPYT 950 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + + E E+ +LG Y SGHPLD Y+ L + G + + +A MVV+ + Sbjct: 951 AGQQLEFERELLGMYLSGHPLDGYEDTLTESGADRLMDLHEAADESMAAVAGMVVTLKTI 1010 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++G + ++ + + E FP Sbjct: 1011 TTKQGKAMAFMECEDQIERCEVVLFP 1036 >gi|302389432|ref|YP_003825253.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter oceani DSM 16646] gi|302200060|gb|ADL07630.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter oceani DSM 16646] Length = 1145 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 382/1034 (36%), Positives = 595/1034 (57%), Gaps = 29/1034 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH++YSLL+GA ++ + + A+AITD ++ ++F + A G++P Sbjct: 3 DFVHLHVHTNYSLLDGACEISKLAKRAKELGMNAMAITDHGVMYGIIDFYKTMKAEGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + +VLL GY+ L++LVS +L + Sbjct: 63 IIGCEVYVAKRSMADRQPG---IDDDQYHLVLLAENETGYKNLVKLVSLGFL-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ ++GLI L+ +G I + A++ ++FG ++ LQ Sbjct: 119 RVDKEVLKK-HSQGLIALSACLAGEIPYFLENGEYEKAKEAACELNEIFGKGNFFLELQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R + + +L+ +PLVATN+ ++ + D HD ++ + V +DR + Sbjct: 178 HGIPEQKRVNANLCRLSKETGIPLVATNDVHYILKSDEPVHDAMLCIQTGKTVKDEDRLK 237 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK++ EM +FS +PEALENTV IA+RC+ L LP F + Sbjct: 238 FNSAELYLKSQEEMWRLFSHIPEALENTVMIAQRCNVELDFGRIHLPHFEVPQGF----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +++ L GL G + + RLD+EL+VI RM +S YFLIV DF+ + Sbjct: 294 QDSYLEKLCYEGL-------VERYGRITPEIKARLDYELDVIKRMGYSSYFLIVWDFVNF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+KN I VGPGRGS AGS+ AY L IT++DPLR++LLFERFLNP+R++MPD D+DFC +R Sbjct: 347 ARKNGIMVGPGRGSAAGSLVAYCLHITNVDPLRYNLLFERFLNPERVTMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RVAQI TFG++ A+AA+RDVGR L PY +VD + K++P +P Sbjct: 407 RQEVIDYVVRKYGEDRVAQIGTFGTMAARAAIRDVGRVLGYPYGEVDTVAKMVPMEPGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + ++ + + RL++ ++ LEG RHASTHAAG+VI PL +LVP++ Sbjct: 467 IEKA-LVLNPELKKLYDENERIKRLIDTAKGLEGFPRHASTHAAGVVISSEPLVELVPLH 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 + S++ F M +E+ GL+K DFLGL+TLT+++ +L + Q RG+ V L +P DD Sbjct: 526 KVGDSNVSTQ-FTMTALEELGLLKMDFLGLRTLTVIRDALGLIEQTRGISVVLDELPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNN 663 + Y LL+ T G+FQLESSGMR L ++P+ EDIIA++ LYRPGP+ + + Sbjct: 585 EKVYDLLSRGETTGVFQLESSGMRNLLRELRPERFEDIIAVIGLYRPGPLGSGAADEFIK 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 KN + I +HP + P+L+ET G+I+YQEQVM+IAQ L+G++L++AD+LR+AMGKK + Sbjct: 645 NKNNQGSIKYLHPRLKPILEETYGIILYQEQVMKIAQDLAGFTLAQADILRKAMGKKQQS 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M+ Q+ FI G +NGI + A NIFE ++ FA YGFNKSHAAAYA+I+YQTA++K H+ Sbjct: 705 VMEAQRAAFIRGCVENGIDEETAANIFEEISYFAGYGFNKSHAAAYAMIAYQTAYLKAHF 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA +T N +K+ ++ + R I+++PP +N F +I + L A+K Sbjct: 765 PVEFMAALLTSVRHNTDKVAQYIAECRHMGIEVLPPDINESFEVFTAVSGKIRFGLTAVK 824 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG A+ I++ F S DFC ++D ++N++ +ESL+ +GA D G R QLL Sbjct: 825 NVGEGMAKAIIKCRDEKGRFVSFSDFCEKLDQTEINKKAVESLIKSGAFDSLGARRSQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + +++ Q +K + ++F + + L + E+ VLG Y Sbjct: 885 KVYEDVLNRVQKKQKQQGKNQLSLFEMIRVDDVVEDELPDIPEYPENELLAMEKEVLGLY 944 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVAT----IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 SGHPL +K +L K ++ + + + ++ + K T+ + ++ Sbjct: 945 LSGHPLREFKDLLEKTTTLCSKDLADEEKEFKDNSAVVVGGIISEIKLKSTKDNKLMAFI 1004 Query: 1019 TFSEPAKEYEANFF 1032 T + E F Sbjct: 1005 TLEDLTGVMEVIAF 1018 >gi|94263380|ref|ZP_01287194.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] gi|93456216|gb|EAT06350.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] Length = 1174 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 429/1036 (41%), Positives = 618/1036 (59%), Gaps = 17/1036 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL VH+ YS+L+GA+ L+ + K A+AITD +F ALEF KA AGI+ Sbjct: 2 SDFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ I + + ++LL GYQ L++L + L + Sbjct: 62 PIIGCEFYIAPDSRRDKSAKSAGAAAHH--LMLLAMDQTGYQNLMKLATIAQL-EGFHYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L L + EGLI +T G + A +LF RLY+ +Q Sbjct: 119 PRIDLEVLAD-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQE 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++ + +LA ELPLVATN+ +L E+ +AH+VL+ + + +DR R Sbjct: 178 NQIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMDSQDRFR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + + K+ +EM + F+ P+AL TVEIA+RC+ L + + P F D + Sbjct: 238 FATDELFFKSPAEMKAAFAHSPQALAATVEIAQRCNLELDLESHHFPDFPVPTGDTLASL 297 Query: 307 EENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E E R A E+R QG + YRQRL+ E++VI +M F GYFLIVADFI Sbjct: 298 FEREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFIN 357 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK IPVGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLN +R SMPDFD+DFCQ+ Sbjct: 358 WAKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQE 417 Query: 426 RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVI YVQ+KY G V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++ Sbjct: 418 RRGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELN 477 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI + +F+E +P V LL +++ LEGL RH S HAAG+VI RP+ + +P Sbjct: 478 ITLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLP 536 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + + +TQ++MK E GLIKFDFLGLKTLT++ ++ + +VD++ IP Sbjct: 537 LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPM 595 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD +T+ LL LG+FQLESSGMR L M+P+ D+IALV+LYRPGP+++ + + Sbjct: 596 DDAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDF 655 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N K+G+ ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI Sbjct: 656 VNTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M+ +K +F++G + NGI A IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K Sbjct: 716 PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP +F+AA ++ +M N +K+ ++ + R+ I+++PP +N DF V D+RI + LAA Sbjct: 776 HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+E D P+ SL DFC RVD +K+NRRV+ESL+ AGA D G R Q Sbjct: 836 VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957 L LD AQ +++R + ++FA + + I L + + + R E+ Sbjct: 896 LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD Y+ L + + +R+ ++ + +++KG + + Sbjct: 956 TVGFYLTGHPLDKYRRELAAVVDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + E FP Sbjct: 1016 LTLEDTLASAEVVIFP 1031 >gi|256004510|ref|ZP_05429489.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|255991515|gb|EEU01618.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360] gi|316940028|gb|ADU74062.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313] Length = 1181 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 382/1068 (35%), Positives = 600/1068 (56%), Gaps = 62/1068 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 5 FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + +VLL GY+ L+++VS + + R Sbjct: 65 LGCEIYTAKGSRFDKQGGWDSDPG---HMVLLAKNNTGYKNLMKIVSIGFT-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L++ +EGLI ++ SG I +A N+ + A++ L +FG D Y+ LQ + Sbjct: 121 VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++L+ +PLVATN++ +L ED AH++L+ + ++ +DR R Sbjct: 180 GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D Y+K+ EM+S+F ++PEA+ NTV IA C+ L+ + LP+F + K+ Sbjct: 240 SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G E + ++ RL++EL+VI +M + YFLIV+DFI++A Sbjct: 296 FEYLRALCYEGFERIYGKDNRD-----EEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ I VGPGRGS AGS AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 351 KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RVAQIITFG++ A+A +RDVGRAL + Y +VD + K+IP + Sbjct: 411 QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDISYGEVDAIAKMIPFQIGMSI 470 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + R+ D V L++ ++ LEG+ RHASTHAAG+VI PL++ VP+ R Sbjct: 471 E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D TQF M +E+ GL+K DFLGL+TLT+++ ++ + + + V + + DD Sbjct: 530 S--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L+ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y KN Sbjct: 588 NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E + HPL++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK M+ Sbjct: 648 NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSIME 707 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA +NG+ + A IF+ + FA Y FNKSHAAAYAVI+Y Sbjct: 708 QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YPVEF+AA + M + +KI ++ + R+ I+++PP +N V F V + + Sbjct: 768 QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG R I++ + + S +F RVD K +N+R +ESL+ +GA D Sbjct: 828 IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941 G R +L+ + + + + K +IF T D+ Sbjct: 888 MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------- 986 + + E+ +LG Y SGHPL ++ ++ ++ Sbjct: 948 DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007 Query: 987 -VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S++ K T+ + + +VT + E FP Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055 >gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58] gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] Length = 1167 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 644/1033 (62%), Positives = 799/1033 (77%), Gaps = 7/1033 (0%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P FVHL+VHS+YSLLEGAL L I+ K D QPAIAITDTNNLF ALEFS+KA G Sbjct: 16 KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEG 75 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPIIGCQL IDMQD + + +P+IVLL + AEGY+RL++LVSR YL +G Sbjct: 76 LQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGG 135 Query: 127 -QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 SV I +WL+E GLI LTG S GP+D A + A++RLLT K LFGDRLY+ Sbjct: 136 SHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIE 195 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQR GYDR E +++ LAY H++PLVATN + F S+ DYEAHD LMAVAH+ +VS R Sbjct: 196 LQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSR 255 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+TPDHYLK+R EM ++F+DLPEALENTVEIA RCS++L+ PILPRF D Sbjct: 256 FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAA 315 Query: 306 EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E LR +AV GL+ RL+ +A GY QDYR+RLDFEL VI+RMKF GYFLIVADF Sbjct: 316 ERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 376 IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P Sbjct: 436 QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L Sbjct: 496 ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP Sbjct: 556 VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD+Q+ERF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H Sbjct: 736 EEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTL+M N EK+ F QDA + I+++ PSV T F+ G+NRIYYSLAAI Sbjct: 796 YPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI++ +KPF SLEDFC R+D K++NRRVLESL+ AGA DCFG R +L+ Sbjct: 856 KGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELI 915 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I YAQ + NRT ++F GT +K+ L F S + E +VLGFY Sbjct: 916 GGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFY 975 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 + HPLD Y+P+L K+ ++ + + A ++ + + RLA V KQ++KTR G+++G VT Sbjct: 976 LTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVT 1035 Query: 1020 FSEPAKEYEANFF 1032 FS+ + +YEA F Sbjct: 1036 FSDASGQYEAVLF 1048 >gi|225180853|ref|ZP_03734301.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] gi|225168334|gb|EEG77137.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] Length = 1144 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 408/1039 (39%), Positives = 604/1039 (58%), Gaps = 30/1039 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S +FVHL VH+ YSLL+GA + N + + A PA+AITD ++ ++F + A AGI Sbjct: 3 SSNFVHLHVHTEYSLLDGASKIKNTVARAAELDMPALAITDHGVMYGVIDFYKAAKDAGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+IGC++ + + + +VLL GY L+ELVSR + + Sbjct: 63 KPVIGCEVYVAPRTRHD---RDSRRDSKQHHLVLLAQDQTGYANLMELVSRGF-SEGFYY 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ LQ +GL +L+ +G I A + A K + +K+ FG + ++ L Sbjct: 119 KPRVDHELLQRY-NKGLTVLSACLAGEIPVALLEGRQEDARKLVSFYKETFGSENFFLEL 177 Query: 187 QRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ S ++ LA + P+V +N+ + ED AHD L+ + + ++R Sbjct: 178 QDHGLQEQKELSPLLIDLAKDTQTPMVVSNDLHYTHREDAHAHDALLCIQTGKTLDDENR 237 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + + YLK EM S++ DLPE L+NTV IA C+ LP + D Sbjct: 238 MRFSTEEFYLKTAEEMGSLYPDLPELLDNTVHIAENCNVDFDFSTTYLPGYEVPPAHD-- 295 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E + LR V G + R + ++RLD+EL+VIA+M + YFLI DF+ Sbjct: 296 --ERSYLRELCVQGTKERYGE------ELPPHVQERLDYELSVIAQMGYDSYFLITWDFV 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A +N I VGPGRGS AGS+ AYAL IT+IDPL++ LLFERFLNP+R++MPD DIDFC Sbjct: 348 NYAHENGILVGPGRGSAAGSLVAYALGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCY 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + R++VI YV KYG E VAQIITFG++ A+AA+RDVGR L +PY+ VDR+ KLIP + Sbjct: 408 ENREKVIDYVVEKYGEECVAQIITFGTMAARAAVRDVGRVLNVPYADVDRIAKLIPAELN 467 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + +E D + +LL++S +EGL RHASTHAAG+VI PL VP Sbjct: 468 ISI-ADGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRHASTHAAGVVISKDPLVNYVP 526 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + + VTQF M +E+ GL+K DFLGL+TLT++ +++ + + GV+VDL+ +P Sbjct: 527 LQKAGEDGM-VTQFPMGTLEELGLLKMDFLGLRTLTIMGEAVRLIKKSTGVEVDLNELPL 585 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD T+H+L+ T GIFQLES GMR L M+PD EDIIA+V+LYRPGP++ I + Sbjct: 586 DDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDIIAVVALYRPGPMEQIPTFIQ 645 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K+G I +H ++P+LKET G+++YQEQ+MQ+A ++G+SL E+D+LRRA+GKK E Sbjct: 646 SKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAGFSLGESDLLRRAIGKKKLE 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +++Q+E F++G G K +A +++L+ KFA YGFNKSHAAAYA+++YQTA++K +Y Sbjct: 706 VLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKSHAAAYALVAYQTAYLKANY 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAI 842 P +F+AA +T M EK+ + + +Q I ++PP VN +F V D + I Y +AA+ Sbjct: 766 PTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLSEKNFTVTDAKVIRYGMAAV 825 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG I+ A + F SL DFC+RVD + N++V+ESL+ AGA DC G +R QL Sbjct: 826 KNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNKKVMESLIKAGAFDCLGANRNQL 885 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENE 955 L LD AQ + K R N +F + D + L R E Sbjct: 886 LAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQWVNLQDDLPDIPAPLPRERLNME 945 Query: 956 QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + LG Y +GHPL+ Y+ +L + + ++ +A M+ + T+KG Sbjct: 946 KDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDNKSVVIAGMINGLKPIITKKGKP 1005 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + T + A E FP Sbjct: 1006 MAFFTLEDLAGGLEVVVFP 1024 >gi|260887140|ref|ZP_05898403.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] gi|260863202|gb|EEX77702.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] Length = 1137 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 384/1040 (36%), Positives = 598/1040 (57%), Gaps = 31/1040 (2%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + K P F HL VH+ YSLL+GA + ++ + ++AITD ++ ++F ++A Sbjct: 5 AAMTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEA 63 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 GI+PIIGC+ + + T + ++LL EGY+ L++LVS Sbjct: 64 KKQGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANT- 119 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + R+ L++ +GLI L+ +G I +A + AEK + + +FG + Sbjct: 120 EGMYYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGREN 178 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ +Q H D + V++LA + LVATN+ ++ +ED EAHDVL+A+ V Sbjct: 179 FFLEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGV 238 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R R + Y+++ EM +F D PEAL NT +IA RC + LP F E Sbjct: 239 HDPTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPE 298 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ LR ++ R+RLD+EL++I RM + YFLI Sbjct: 299 GM----TDDAYLRQLCEE-------NLSLRYEKITPAVRERLDYELSIIHRMGYDSYFLI 347 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI++A+ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D Sbjct: 348 VWDFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDID 407 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K + Sbjct: 408 IDFCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAV 467 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P++ + +AD FR RL++ ++ LEGL RH+STHAAG+VI PL Sbjct: 468 PSELGITLDRA-LADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPL 526 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+ V VT+++ +E+ GL+K DFLGL+TLT++ +L + + RGV +D+ Sbjct: 527 TDYVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDI 584 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P +D +T +L T +FQ+ES+GM ++ +QP +D+I V+LYRPGP+ + Sbjct: 585 DTMPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSG 644 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + ++GK+K+ +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRA Sbjct: 645 MVTDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRA 704 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E + Q+E ++ G +NGI +A IF+LL FADYGFNKSH+AAYA++++QT Sbjct: 705 MGKKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQT 764 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP EF+AA +T MD +K+ + + R+ I+I+PP VN +F V I Sbjct: 765 AYLKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIR 824 Query: 837 YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + LAA++ VG + + + F SL DFC+RVD + N+RVLESL+ GA D G Sbjct: 825 FGLAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLG 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R QLL L+ + A + + +F ++ + L +S R E Sbjct: 885 AHRSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWE 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGS 1013 + GF+ +GHPLD ++ ++ + + + + +R+ ++ S ++ T+KG Sbjct: 945 KENTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGD 1002 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + ++ + E FP Sbjct: 1003 TMCFLELEDYTHSVEVVVFP 1022 >gi|330839090|ref|YP_004413670.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] gi|329746854|gb|AEC00211.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185] Length = 1131 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 384/1038 (36%), Positives = 598/1038 (57%), Gaps = 31/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA + ++ + ++AITD ++ ++F ++A Sbjct: 1 MTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC+ + + T + ++LL EGY+ L++LVS + Sbjct: 60 QGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANT-EG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L++ +GLI L+ +G I +A + AEK + + +FG + + Sbjct: 116 MYYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFF 174 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H D + V++LA + LVATN+ ++ +ED EAHDVL+A+ V Sbjct: 175 LEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHD 234 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R + Y+++ EM +F D PEAL NT +IA RC + LP F E Sbjct: 235 PTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPEGM 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ LR ++ R+RLD+EL++I RM + YFLIV Sbjct: 295 ----TDDAYLRQLCEE-------NLSLRYEKITPAVRERLDYELSIIHRMGYDSYFLIVW 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A+ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DID Sbjct: 344 DFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDID 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P+ Sbjct: 404 FCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPS 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +AD FR RL++ ++ LEGL RH+STHAAG+VI PL+ Sbjct: 464 ELGITLDRA-LADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTD 522 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ V VT+++ +E+ GL+K DFLGL+TLT++ +L + + RGV +D+ Sbjct: 523 YVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDT 580 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 +P +D +T +L T +FQ+ES+GM ++ +QP +D+I V+LYRPGP+ + + Sbjct: 581 MPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMV 640 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + ++GK+K+ +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMG Sbjct: 641 TDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMG 700 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E + Q+E ++ G +NGI +A IF+LL FADYGFNKSH+AAYA++++QTA+ Sbjct: 701 KKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAY 760 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYP EF+AA +T MD +K+ + + R+ I+I+PP VN +F V I + Sbjct: 761 LKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFG 820 Query: 839 LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAA++ VG + + + F SL DFC+RVD + N+RVLESL+ GA D G Sbjct: 821 LAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAH 880 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QLL L+ + A + + +F ++ + L +S R E+ Sbjct: 881 RSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKE 940 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRI 1015 GF+ +GHPLD ++ ++ + + + + +R+ ++ S ++ T+KG + Sbjct: 941 NTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTM 998 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + E FP Sbjct: 999 CFLELEDYTHSVEVVVFP 1016 >gi|94267210|ref|ZP_01290812.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] gi|93452086|gb|EAT02768.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1] Length = 1174 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 428/1036 (41%), Positives = 617/1036 (59%), Gaps = 17/1036 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL VH+ YS+L+GA+ L+ + K A+AITD +F ALEF KA AGI+ Sbjct: 2 SDFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ I + + ++LL GYQ L++L + L + Sbjct: 62 PIIGCEFYIAPDSRRDKSAKSAGAAAHH--LMLLAMDQTGYQNLMKLATIAQL-EGFHYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L L EGLI +T G + A +LF RLY+ +Q Sbjct: 119 PRIDLEVLAA-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQE 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++ + +LA ELPLVATN+ +L E+ +AH+VL+ + ++ +DR R Sbjct: 178 NQIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMAAQDRFR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + + K+ +EM + F+ P+AL T EIA+RC+ L + + P F D + Sbjct: 238 FATDELFFKSPAEMKAAFAHSPQALAATAEIAQRCNLELDLESHHFPDFPVPTGDTLASL 297 Query: 307 EENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E E R A E+R QG + YRQRL+ E++VI +M F GYFLIVADFI Sbjct: 298 FEREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFIN 357 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK IPVGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLN +R SMPDFD+DFCQ+ Sbjct: 358 WAKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQE 417 Query: 426 RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVI YVQ+KY G V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++ Sbjct: 418 RRGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELN 477 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI + +F+E +P V LL +++ LEGL RH S HAAG+VI RP+ + +P Sbjct: 478 ITLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLP 536 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603 + + +TQ++MK E GLIKFDFLGLKTLT++ ++ + +VD++ IP Sbjct: 537 LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPM 595 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD +T+ LL LG+FQLESSGMR L M+P+ D+IALV+LYRPGP+++ + + Sbjct: 596 DDAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDF 655 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N K+G+ ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI Sbjct: 656 VNTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M+ +K +F++G + NGI A IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K Sbjct: 716 PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP +F+AA ++ +M N +K+ ++ + R+ I+++PP +N DF V D+RI + LAA Sbjct: 776 HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG I+E D P+ SL DFC RVD +K+NRRV+ESL+ AGA D G R Q Sbjct: 836 VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957 L LD AQ +++R + ++FA + + I L + + + R E+ Sbjct: 896 LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD Y+ L + + +R+ ++ + +++KG + + Sbjct: 956 TVGFYLTGHPLDKYRRELSGVIDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + E FP Sbjct: 1016 LTLEDTLASAEVVIFP 1031 >gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506] gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506] Length = 1149 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 559/1036 (53%), Positives = 741/1036 (71%), Gaps = 18/1036 (1%) Query: 2 TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 Q + ++ + FVHL VHSS+SLLEGAL++ + + D+QPAIA+TDT NLF ALEFS+ Sbjct: 3 QQDMTQADAGFVHLHVHSSFSLLEGALTIGKLAELAKKDRQPAIALTDTGNLFGALEFSE 62 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 K +GIQPI+GC L +D G P +VLL + EG++ L+ELVSR + Sbjct: 63 KMAGSGIQPILGCALSVDFPGPAPRGPAG----QQRPRVVLLAMSEEGWKNLMELVSRSF 118 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L + I L WL E T GLI LTGG SGPIDRA S AE+RL T +LFGD Sbjct: 119 LDTASDGAPHIKLDWL-EGRTGGLIALTGGPSGPIDRALAAGSHDQAEQRLHTLAELFGD 177 Query: 181 RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RLYV +QRH + R E+ +++LAY +LPLVATN F ++DYEAHD L+ +A + Sbjct: 178 RLYVEIQRHGVAEERRVETALIELAYRLDLPLVATNEPFFAGQDDYEAHDALICIAEGRL 237 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 V++ DR ++TP+H + R+EM+++F+DLPEAL NTVEIARRC++ + PILPR Sbjct: 238 VAEGDRRQLTPEHRFRTRAEMMALFADLPEALANTVEIARRCAYRPRTVKPILPR----- 292 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++++E ELR +A GL RLA A G +DY RL FEL++I +MKF GYFLI Sbjct: 293 -FTMERDEAEELRVQAEEGLRKRLAVHGPAPGLAEKDYEDRLAFELSIIEKMKFPGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK IPVGPGRGSGAGS+ AY+LTITD+DPLRF LLFERFLNP+R+SMPDFD Sbjct: 352 VSDFIKWAKAQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFGLLFERFLNPERVSMPDFD 411 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ+RRDEVIRYVQ +YG ++VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+ Sbjct: 412 IDFCQERRDEVIRYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLV 471 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA+PV+ QAI + R + +P V R +I+ KLEGL RHASTHAAGIVIGDR Sbjct: 472 PQNPANPVTLTQAIEGEPRLQAESEQNPVVKRAFDIATKLEGLNRHASTHAAGIVIGDRK 531 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVP+YRD RSD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT+LQ ++ +AQ G+++DL Sbjct: 532 LSNLVPLYRDPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTVLQTAVRLVAQLGIQLDL 591 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP +D +TY +LT T+G+FQ+ESSGMR+AL M+PD +EDIIALV+LYRPGP+ NI Sbjct: 592 STIPLNDEKTYAMLTRGETVGVFQVESSGMRRALVDMKPDRLEDIIALVALYRPGPMANI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY KNG E+ V HP ++ LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMG Sbjct: 652 PVYCAVKNGHEQAVYAHPALESSLKETYGVIIYQEQVMQIAQTLSGYSLGEADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ERF+SGA + G++K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+ Sbjct: 712 KKIRAEMDKQRERFVSGAVERGVAKAKASEIFDLLAKFADYGFNKSHAAAYALVSYQTAY 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK +Y EFLAASMTL+M N +K+ +F Q+A++ I+++PPSVN +F V + RI Y+ Sbjct: 772 MKANYATEFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPSVNHSGREFAVKEGRILYA 831 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LAAIKGVG I+EA D+PF SL DF +R+++K LN+R +ESLV AGA D +R Sbjct: 832 LAAIKGVGVHAVEAIVEARGDRPFASLSDFAARINAKALNKRTMESLVNAGAFDALEPNR 891 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + ++D+I +A V N+F + ++ + + + + + E Sbjct: 892 ARAAAAIDSILAHAASVGAEAAIGQGNMFGGPAA--ATELPIPNATPWLPAEKLQREYDA 949 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ +GHPLD Y L ++ ++ + + ++R +I RLAA VVS+Q+++T+ G+++G Sbjct: 950 IGFFLTGHPLDEYGKALDRLRVQRWSDFTRSVRAGSIAGRLAATVVSRQERRTKTGNKMG 1009 Query: 1017 WVTFSEPAKEYEANFF 1032 V S+P+ ++EA F Sbjct: 1010 IVGLSDPSGQFEAVLF 1025 >gi|160945128|ref|ZP_02092354.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii M21/2] gi|158442859|gb|EDP19864.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii M21/2] Length = 1169 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 375/1056 (35%), Positives = 596/1056 (56%), Gaps = 42/1056 (3%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + F HL +H+ YSLL+GA ++ +++++ Q AIA TD ++ ++F + Sbjct: 1 MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PIIGC++ + + N+ ++LL GY+ LI++VS + Sbjct: 61 AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ R+ L++ EGLI L+ +G I +A + A+ L ++ LFG Sbjct: 117 -VEGFYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174 Query: 180 DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ LQ H D Q+++L+ +P+ ATN++ +L +ED + +L+ + Sbjct: 175 ENYYIELQDHGLKEDSTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234 Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + DR T + Y+K EM +FS +PEA NT +IA +C+F + +P + Sbjct: 235 TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + D Q GLE R Q RL +E++V+ M ++ Y+ Sbjct: 295 PDGMDNQ----AYFEKLCWDGLERRYGPDV------PQANIDRLKYEISVVKTMGYTNYY 344 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D+I +AK IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD Sbjct: 345 LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC +RR EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K Sbjct: 405 FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P + + +A+ S ++ DP V L++ + K+EG+ RHASTHAAG+VI Sbjct: 465 LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 P +P+ LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ + Sbjct: 524 PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEVAVQKQHPEFS 581 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + ++ +DD +TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+ Sbjct: 582 IRMLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y ++ +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM Sbjct: 642 IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701 Query: 718 GKKIKEEMDKQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAA 767 KK M+ ++E F+ G ++ G + +A I++ ++ FA Y FNKSHAA Sbjct: 702 SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA +++QTA++K HYP +F+AA +T +DN +K+ ++ + + I+++PP VN Sbjct: 762 CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F DN +I + L A+K VG + + +KP+ SL DFC R+ +LNRR +ESL+ Sbjct: 822 FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLE 941 AGA DCFG +R ++++++ I K + + ++F+ G + Sbjct: 882 KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997 + + + E+ V G Y SGHPLD Y+ ++G ++ G +R+ Sbjct: 942 PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VV + T+ S + + + + E FP Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|295105629|emb|CBL03173.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium prausnitzii SL3/3] Length = 1169 Score = 829 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 375/1056 (35%), Positives = 594/1056 (56%), Gaps = 42/1056 (3%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + F HL +H+ YSLL+GA ++ +++++ Q AIA TD ++ ++F + Sbjct: 1 MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PIIGC++ + + N+ ++LL GY+ LI++VS + Sbjct: 61 AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ R+ L++ EGLI L+ +G I +A + A+ L ++ LFG Sbjct: 117 -VEGFYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174 Query: 180 DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ LQ H D Q+++L+ +P+ ATN++ +L +ED + +L+ + Sbjct: 175 ENYYIELQDHGLKEDTTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234 Query: 239 VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + DR T + Y+K EM +FS +PEA NT +IA +C+F + +P + Sbjct: 235 TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + D Q GLE R Q RL +E+ V+ M ++ Y+ Sbjct: 295 PDGMDNQ----AYFEKLCWDGLERRYGPDV------PQANIDRLKYEIGVVKTMGYTNYY 344 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D+I +AK IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD Sbjct: 345 LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC +RR EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K Sbjct: 405 FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P + + +A+ S ++ DP V L++ + K+EG+ RHASTHAAG+VI Sbjct: 465 LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 P +P+ LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ + Sbjct: 524 PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAETAVQKQHPEFS 581 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + + +DD +TY +L T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+ Sbjct: 582 IRKLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y ++ +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM Sbjct: 642 IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701 Query: 718 GKKIKEEMDKQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAA 767 KK M+ ++E F+ G ++ G + +A I++ ++ FA Y FNKSHAA Sbjct: 702 SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 YA +++QTA++K HYP +F+AA +T +DN +K+ ++ + + I+++PP VN Sbjct: 762 CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F DN +I + L A+K VG + + +KP+ SL DFC R+ +LNRR +ESL+ Sbjct: 822 FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLE 941 AGA DCFG +R ++++++ I K + + ++F+ G + Sbjct: 882 KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997 + + + E+ V G Y SGHPLD Y+ ++G ++ G +R+ Sbjct: 942 PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VV + T+ S + + + + E FP Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037 >gi|255657970|ref|ZP_05403379.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544] gi|260850171|gb|EEX70178.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544] Length = 1128 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 379/1030 (36%), Positives = 600/1030 (58%), Gaps = 26/1030 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+GA + +++ A +IAITD ++ ++F ++A G++PI Sbjct: 3 FTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL GY+ L++LVS ++ R Sbjct: 63 IGCEVYVAPGARQEHREVNGVR---YYHLILLAENQTGYRNLVKLVSLAN-VEGMYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ EG+I L+ +G I RA ++ + A+ + + ++FG + ++ +Q H Sbjct: 119 VDKDLLRQYH-EGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + +V+LA +++ LVATN+ ++ ED E HD+L+ + + DR R Sbjct: 178 GLPEERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRF 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D+YLK+ EM ++F DLPEA+ NT +IA RC + LP + ++ Sbjct: 238 ASDDYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPAPY---ADD 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR+ + R+RL++EL +I RM + YFLIV DFI ++ Sbjct: 295 EAYLRHLCEE-------NLPRRYATVTEKIRERLEYELGIIHRMGYDSYFLIVWDFINYS 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +++ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D+DF +R Sbjct: 348 REHGIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI YV+ +YG++ VAQI+TFG++ AK A+RDVGR L +PY++V + KL+PN+ + Sbjct: 408 GKVIDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITL 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + FR+A + V RL+++++K+EGL RH+STHAAG+VI PL+ VP+ Sbjct: 468 DKA-MQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV-- 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + VT+++ +E+ GL+K DFLGL+TLT++ ++ + + R KVD+ IP D Sbjct: 525 SISEGTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEKVDIDKIPLTDG 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 T +L T +FQ+ES+GM Q + + P+ D+I LV+LYRPGP+ + + + Sbjct: 585 LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++G++++ +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 645 RHGEKEVTYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHEI 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + QKE F+ G KN I +A IF+LL FADYGFNKSH+AAYA++++QTA++K HYP Sbjct: 705 LMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKAHYP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA +T MD K+ + + R+ I+I+PP +N F V + I + LAA++ Sbjct: 765 AEFMAAMLTSIMD-TPKVSTYIELCRRMGIKILPPDINASSAYFSVDGDAIRFGLAAVRN 823 Query: 845 VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG T ++ PF SL DFC RVD + +NRRV+ESL+ GA D FG R QLL Sbjct: 824 VGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKRSQLLA 883 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L A +K+ + +F+ E + + L + R E+ GFY Sbjct: 884 VLPQTVMEAAQQQKDAVSGQMGLFSDETIEETGMLQLPDIDEVPKAERLRWEKEATGFYI 943 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 +GHPLD Y L + G + +R+ M+ ++ T+KG + + T + Sbjct: 944 TGHPLDQYAAKLENLPRIGSLQPDTVRDKQVVRIGGMLTEAKRITTKKGDTMCFATVEDF 1003 Query: 1024 AKEYEANFFP 1033 E FP Sbjct: 1004 TDSIEVTVFP 1013 >gi|197119463|ref|YP_002139890.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem] gi|197088823|gb|ACH40094.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem] Length = 1156 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 402/1037 (38%), Positives = 617/1037 (59%), Gaps = 13/1037 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ + +FVHL +HS YSLL+GA+ + ++L K+ PA+A+TD N+F LEF K Sbjct: 1 MDST-NFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G ++ I QD + ++LL G++ L LVS Y + Sbjct: 60 KGVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGY-KEG 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + RI L + EGLI+L+ G + N A + + F Y+ Sbjct: 119 FYRRPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYI 177 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ ++ ++ +++++A +LPLVATN+ +L+ ED AH++L+ + +S Sbjct: 178 ELQENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 237 Query: 244 DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + + Y+K EM F PEA+ENTV+IA RC+ P + E + Sbjct: 238 THMAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGET 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + ++ E E V L+ + + Q Y RL EL+ I +M F GYFLIVAD Sbjct: 298 LDQQLEREATVGLVERLKKIRIKYNL-TEEQEQAYHARLRIELDCIKQMGFPGYFLIVAD 356 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DF Sbjct: 357 FINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDF 416 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + +VDR+ KL+P Sbjct: 417 CQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEV 476 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + + + + +E ADP V ++ ++ +LEGL RHASTHAAG+V+ R + + Sbjct: 477 LGITLDKA-LEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEF 535 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 P+Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + + D++L+ Sbjct: 536 CPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLL 595 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659 DD E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ + + Sbjct: 596 RDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 655 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+LRRAMGK Sbjct: 656 DFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGK 715 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA+++YQTA++ Sbjct: 716 KDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFL 775 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V D + + L Sbjct: 776 KAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGL 835 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG I+EA D+PF L DFC RVD +++N+RV+E+L+ GA DC G R Sbjct: 836 GAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRS 895 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQ 956 QL+ L++ Q V++ R + ++F + G L + + R E+ Sbjct: 896 QLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRLGCEK 955 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +GF+ +GHPLD Y +R+ + + +R+ + S ++ T+KG R+ Sbjct: 956 EAIGFFITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKGDRMA 1015 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ + E FP Sbjct: 1016 FLALEDLVGSVEVVVFP 1032 >gi|154499865|ref|ZP_02037903.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799] gi|150271463|gb|EDM98720.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799] Length = 1161 Score = 827 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 365/1048 (34%), Positives = 583/1048 (55%), Gaps = 42/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +SLL+GA + + ++ Q A+AITD ++ A++F + A G++P Sbjct: 2 SFVHLHVHTEFSLLDGACRIPALAARVRELGQSAVAITDHGVMYGAVDFYRACKAEGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + ++ +VLL GY+ L LVSR +L D Sbjct: 62 IIGCEVYVAPRGMTDRVHE---LDAEARHLVLLCKNETGYRNLCYLVSRAFL-DGFYIKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + TEGLI ++ +G + R + + A++ L K+ FG+ Y+ +Q H Sbjct: 118 RIDKELLWQ-HTEGLIAMSACLAGEVPRLILGGNYEGAKRAALEMKEHFGEDYYLEIQDH 176 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D ++++ +PLVATN++ + ED D LM + V R + Sbjct: 177 SLPEDAEVVRGIIRIHEETGIPLVATNDAHYTRREDAAMQDTLMCIQMGRTVDDPGRMKF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y+K+ EM +F D PEA+ENTV +A +C+ + LP F E + Sbjct: 237 ETEEFYIKSEEEMAQLFPDWPEAIENTVRVAEKCNLEFEFGKYHLPEFKLPEGWT---DP 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + G R +G +Q +++L++E+ VI +M F YFLIV+DFI +A Sbjct: 294 DAYFEHLCWEGFARRYPEG-------SQKNKEQLEYEMGVIRQMGFVDYFLIVSDFIGYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +NIPVGPGRGS AGS+ +Y + ITD+DP+++ L FERFLNP+R++MPD DIDFC RR Sbjct: 347 KSHNIPVGPGRGSAAGSMVSYCMNITDVDPVKYDLFFERFLNPERVTMPDIDIDFCIRRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485 EVI YVQ KYG + VAQI+TFG++ A+ A+RDVGRAL +PY+ VD + K +P+ P H Sbjct: 407 QEVIEYVQQKYGEDHVAQIVTFGTMAARGAIRDVGRALNIPYADVDAVAKQVPSGPGALH 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +++ + R++ D + L++ ++ +EG+ RHASTHAAG+VI RP+ + VP+ Sbjct: 467 ITLDESLKLSKQLRDSYEGDERIHNLIDTAKAIEGMPRHASTHAAGVVITKRPVYEYVPL 526 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 + VTQ+ M +E+ GL+K DFLGL+ LT+L ++ + +R D+ IP D Sbjct: 527 --AKNDESVVTQYVMTTLEELGLLKMDFLGLRNLTVLDDAVQLVRRRIPDFDIHSIPDHD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + +L+ T G+FQ+ES+GM G++P IEDI A+++LYRPGP+++I + K Sbjct: 585 PAVFKMLSDGKTSGVFQMESAGMTGVCVGLKPQNIEDITAIIALYRPGPMESIPRFIACK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +K+ HP+++P+LK T G I+YQEQV++I Q L GYSL +AD++RRA+ KK K ++ Sbjct: 645 QNPDKVKYKHPMLEPILKVTYGCIVYQEQVIRIFQELGGYSLGQADMVRRAISKKKKAQI 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ FI G G+ + +I++ + FA+Y FNK+HA +YA+++YQTA Sbjct: 705 EKERQTFIYGDSERGIEGCIARGVPEQTGKDIYDEIYDFANYAFNKAHAVSYAIVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 + K HY E++AA +T +D+ EK+ ++ + ++ I ++PP +N F V I + Sbjct: 765 YFKCHYTREYMAALLTSVLDSSEKVAEYIAECKECGISLLPPDINESGASFTVTGENIRF 824 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA+KGVG + +++ F SL DFCSR+ LN+RVLE+L+ GA D G Sbjct: 825 GLAAVKGVGWGFIQSVLDERERGGAFQSLSDFCSRMMDADLNKRVLENLIKCGAFDSTGA 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954 R QLL+ + + ++F ++ + ++ L + Sbjct: 885 RRSQLLKVFPQVVDSIAQTRRKNLEGQFDLFGGGGDQPQAAPEMELPDIPEFSRRELMTM 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----------IRGNNIRLAAMVVSK 1004 E+ G Y +GHP+D Y+ R+ ++ G + +A ++ S Sbjct: 945 EKETTGLYLTGHPMDEYRETARRYHAAPIGAILSDFAKEEGNTDFQDGQKVNIAGVISSA 1004 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K TR S + +VT + E F Sbjct: 1005 KTKTTRNNSLMAYVTLEDDTGSMELLVF 1032 >gi|323705009|ref|ZP_08116585.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535435|gb|EGB25210.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1144 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 394/1049 (37%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+G+ + ++ + +IAITD ++ A++F ++A + G++PI Sbjct: 2 FVHLHVHSEYSLLDGSCRIKELIKRTKELGMNSIAITDHGVMYGAIDFYKEAVSYGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL GY+ L+++VS+ + D R Sbjct: 62 IGCEIYVSPRSLYDKEYGIDNL---NYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I +L+E +EGLI L+ G I + + A++ + + +FG Y+ LQ H Sbjct: 118 IDHQYLKE-HSEGLIALSSCLGGEIPSYLISDDYEKAKETAIFYNSIFGTGNFYLELQYH 176 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 S++++L+ +PLVATN+ +L +ED+ AH+VL+ + + DR Sbjct: 177 GLSQQEKVNSELIKLSQELNIPLVATNDVHYLKKEDHLAHEVLLCIQTGKNMDDSDRMSF 236 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK+ EM +FS EALENTV+IA C+ + + LP+F + Sbjct: 237 PTDQFYLKSPDEMYEMFSYCKEALENTVKIADMCNLEFEFNKTKLPKFEVPDGMK----S 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + GL R + +RL++EL+VI +M + YFLIV DFI++A Sbjct: 293 DEYLRKLCIDGLYKRYPN-------PTDEVMERLNYELSVIEKMGYVDYFLIVWDFIKFA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + N I GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR Sbjct: 346 RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RVAQIITFG++ A+AA+RDVGRAL PY++VD + K+IP + + Sbjct: 406 QEVIDYVVKKYGEDRVAQIITFGTMAARAAIRDVGRALNFPYAEVDVIAKMIPFELGMTI 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 I + ++ D + RL++IS+ LEGL RHASTHAAG+VI PL + VP+ + Sbjct: 466 DKA-IELNPELKDKYEKDEKIRRLIDISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + VTQF M +E+ GL+K DFLGL+TLT+++ +LD + + RG+ VD+ I F+D Sbjct: 525 N--EGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDIVKETRGIDVDIDSIDFEDK 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E Y L++ T G+FQLESSGM+Q + ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 583 EVYALISRGDTEGVFQLESSGMKQFMTELRPEKLEDVIAGISLYRPGPMDQIPRYIENKN 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E I HPL+ P+L T G ++YQEQVMQI + L+GYSL +D++RRAM KK + M+ Sbjct: 643 NPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G A G+ + A +F+ + FA+Y FNKSHAAAYAV+++ Sbjct: 703 EERKNFIYGIKDENGNYVVPGAVNRGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA + +DN +K+ + Q ++ IQI+PP +N F V + + Sbjct: 763 QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKIGIQILPPDINESYSYFTVVNGK 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG I+E + + S+ DF R+D +LN++ +ESL+ AGA D Sbjct: 823 IRFGLAAVKNVGLNATLEIVEDRKKNGRYTSIIDFFERIDEMQLNKKAVESLIKAGAFDS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 FG R QLL + I + + ++F + + +L + V Sbjct: 883 FGVYRSQLLAVYEGIMESIHRSREKNIKGQMSLFESDSESHKIDYSLPDIKEFSKGVILS 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIRLAAMVVSK 1004 E+ +G Y SGHPLD Y+ +R++ + ++ L +V SK Sbjct: 943 MEKETMGLYISGHPLDEYQDDIRRIANCTTRDLKNSDDSFVKKSAFDDQDVVLVGIVESK 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K T+ + + +V ++ E FP Sbjct: 1003 KIKFTKNNNMMAFVNLADLYGTIEVIVFP 1031 >gi|253699799|ref|YP_003020988.1| DNA polymerase III subunit alpha [Geobacter sp. M21] gi|251774649|gb|ACT17230.1| DNA polymerase III, alpha subunit [Geobacter sp. M21] Length = 1155 Score = 825 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 404/1035 (39%), Positives = 615/1035 (59%), Gaps = 13/1035 (1%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S +FVHL +HS YSLL+GA+ + ++L K+ PA+A+TD N+F LEF K G Sbjct: 2 DSANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIG ++ I Q L ++LL G++ L LVS Y + Sbjct: 62 IKPIIGSEVYIAPQSRLLKQAPA-AGEANSYHLILLCENMTGFKNLSYLVSAGY-KEGFY 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + RI L + EGLI+L+ G + N A + + F Y+ L Sbjct: 120 RRPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIEL 178 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q ++ ++ +++++A +LPLVATN+ +L+ ED AH++L+ + +S +R Sbjct: 179 QENKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPNR 238 Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + Y+K EM + F PEAL NTV+IA RC + P + E + + Sbjct: 239 MAFSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGETLD 298 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ E E + + L+ + + Q Y RL EL+ I +M F GYFLIVADFI Sbjct: 299 QQLERESKAGLIERLKKIRIKYNL-TEEQEQGYHARLRIELDCIKQMGFPGYFLIVADFI 357 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DFCQ Sbjct: 358 NWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ 417 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + +VDR+ KL+P Sbjct: 418 DRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLG 477 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + + + +E ADP V ++ ++ +LEGL RHASTHAAG+V+ R + + P Sbjct: 478 ITLEKA-LEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCP 536 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 +Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + + D++L+ Sbjct: 537 VYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLRD 596 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ + + + Sbjct: 597 DDAESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDF 656 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+LRRAMGKK Sbjct: 657 IERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKD 716 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K Sbjct: 717 AEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKA 776 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V D + + L A Sbjct: 777 HYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGLGA 836 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +K VG I+EA D+PF L DFC RVD +++N+RV+E+L+ GA DC G R QL Sbjct: 837 VKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRSQL 896 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRV 958 + L++ Q V++ R + ++F + G L + R E+ Sbjct: 897 MAGLEDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWDEKYRLGCEKEA 956 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 +GF+ +GHPLD Y +R+ + +R+ + + ++ T+KG R+ ++ Sbjct: 957 IGFFITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKELITKKGDRMAFL 1016 Query: 1019 TFSEPAKEYEANFFP 1033 + E FP Sbjct: 1017 ALEDLVGSVEVVVFP 1031 >gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419] gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419] Length = 1165 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 642/1030 (62%), Positives = 794/1030 (77%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 17 PQFVHLRVHSAYSLLEGALPLKKIIGKAIADDQPAIGIADTNNLFAALEFSQKAAGDGLQ 76 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +PS+VL+ +T +GY RL+ELVSR YL +G Sbjct: 77 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPSLVLIAATDDGYARLVELVSRAYLEGEGHH 136 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 VRI SWL GT GLI LTG +GPID A S +AE RL T +LFGDRLYV LQ Sbjct: 137 QVRISRSWLSAGGTSGLIALTGAGTGPIDMAVKAGSPALAEARLKTLIELFGDRLYVELQ 196 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD L+AVAH+ +VS R R Sbjct: 197 RHGNYDRSHENRMIDLAYRLDVPLVATNEAFFPSPADYDAHDALIAVAHNAMVSDDSRFR 256 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306 +TPDHYLK+R EM ++F+DLPEALENT+EIARRCSF+L+ +PILPRF D Q E Sbjct: 257 LTPDHYLKSRKEMAALFADLPEALENTIEIARRCSFMLKTRSPILPRFTGASGDPEQAER 316 Query: 307 -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ELR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 317 AEVAELRRQAEEGLEGRLAKLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 377 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 437 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 497 PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP D Sbjct: 557 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIHIDLASIPLD 616 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI +YN R Sbjct: 617 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPIYNAR 676 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE Sbjct: 677 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA +NG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 737 MDKQRARFVDGAVRNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N EKI F QDA + IQ++ PSV T F+ G+ RIYYSLAA+KG Sbjct: 797 VEFLAASMTLDMSNTEKINDFRQDAMRLGIQVIAPSVQTSHRHFETGEKRIYYSLAALKG 856 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 857 VGESAVDHIVAVREDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELVGG 916 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 917 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 976 Query: 965 GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + A +G RLA V SKQ++KTR G+++G V FS+ Sbjct: 977 AHPLDTYNSLLAKMRVQTFADFSAAVKKGATAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1037 ASGQFEAVLF 1046 >gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021] gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti 1021] gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1169 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 637/1030 (61%), Positives = 786/1030 (76%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 21 PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +P+IVL+ +T +GY RL+ELVSR YL +G Q Sbjct: 81 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI SWL GT GLI LTG +GP+D A S +AE RL +LFGDRLYV LQ Sbjct: 141 QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQ 200 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD LMAVAH+ +VS R R Sbjct: 201 RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+ PILPRF D + E Sbjct: 261 LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320 Query: 308 ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 321 AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 381 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 441 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P +AI ++ R RE +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 501 PTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D Sbjct: 561 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHIDLASIPLD 620 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 621 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E Sbjct: 681 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 741 MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N +KI F QDA + IQ++ PSV T F+ GDNRIYYSLAA+KG Sbjct: 801 VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 861 VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 921 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 980 Query: 965 GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + RLA V SKQ++KTR G+++G V FS+ Sbjct: 981 AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1041 ASGQFEAVLF 1050 >gi|312793441|ref|YP_004026364.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180581|gb|ADQ40751.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1140 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 383/1033 (37%), Positives = 598/1033 (57%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL EGY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNEGYKNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GL+ LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM IF +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVRDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAHILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + K + E + I + ++ + K T+ + + Sbjct: 941 HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42] gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] Length = 1165 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 642/1031 (62%), Positives = 811/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNLFVALEFSQKAMDEGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V+LAYTH+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EM +F+DLPEALENT+EIA+RCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E ELR +AV GL++RLA ++ GY +DYR+RL+FEL+VI RM+F GYFLIV+DFI Sbjct: 316 RAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVSDFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 DDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPVYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+ K A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI+L +S +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|312876042|ref|ZP_07736031.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311797240|gb|EFR13580.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1140 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 380/1033 (36%), Positives = 597/1033 (57%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + ++LL EGY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLILLAMDNEGYKNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GL+ LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++P+VATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELMRLSKKYKIPIVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM IF +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I++ F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAQILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + K + E + I + ++ + K T+ + + Sbjct: 941 HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|304438918|ref|ZP_07398841.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372584|gb|EFM26167.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1140 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 373/1043 (35%), Positives = 587/1043 (56%), Gaps = 45/1043 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + K+ +IAITD N+F A++F + G++PI Sbjct: 2 FTHLHVHTEYSLLDGSTRIKELPKKVKELGMDSIAITDHGNMFGAIQFYKACKDEGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + K ++LL +GY+ L+++VS+ + +D R Sbjct: 62 MGCEVYVSSTNLNVKDRTSKR-----YHLILLAENNKGYENLMKIVSKGW-VDGFYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+E +EG+I L+ G + R + A K L ++ +FG D ++ +Q H Sbjct: 116 VDKKVLREY-SEGIIALSACLQGEVQRKILDRDFEAARKAALEYQDIFGKDNFFLEVQNH 174 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + L+ +PL ATN+ +L + D +AHDVL+ + T++S R + Sbjct: 175 GIREQLEANIHLRNLSGELGIPLAATNDVHYLEKSDAKAHDVLLCIQTGTILSDGKRMKF 234 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM D +A+ENT EIA+RC+ ++ H LP+F + Sbjct: 235 PSDEFYLKSEDEMKEALPDFVDAIENTYEIAKRCNVTIEFHNYHLPKFDVPDG----YTN 290 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ A+ GL + + +R +FELN I M ++ YFLIV DFI +A Sbjct: 291 DEYLKELALKGLREKYEN-------LDEKIMERFNFELNTIISMGYTDYFLIVWDFINYA 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGS AGS+ +Y L I D+DPLRF LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 344 KENGIMVGPGRGSAAGSIISYGLGIIDVDPLRFDLLFERFLNPERVSMPDIDIDFCYERR 403 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV KYG + VAQI TFG++ A+ A+RDVGR + + YS+VD++ K+IP + + Sbjct: 404 EEVIEYVNRKYGKDHVAQIATFGTMAARGAIRDVGRVMDISYSKVDQVAKMIPQELNITI 463 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AI R A DP V +++ + K+EGL RH STHAAG+VI +R ++ VP+ Sbjct: 464 -NKAIEMSEDLRNAMRDDPQVKGIIDTALKVEGLPRHMSTHAAGVVISNRDVTDYVPL-- 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + +TQFNM +E+ GL+K DFLGL+TLT+++ +++ + + +++D FDD Sbjct: 521 ARTDEQLLTQFNMTELEELGLLKMDFLGLRTLTVIRDAVNMVKENYGIEIDFKDQGFDDK 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E L TLGIFQ ESSGMR L+ ++ D ED++A +L+RPGP+ I + K+ Sbjct: 581 EVIDLFKHANTLGIFQFESSGMRAFLKELKADAFEDLVAANALFRPGPMSQIPRFIESKH 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 KI IHP ++P+L T G I+YQEQVMQI Q + GYSL AD++RRAM KK M+ Sbjct: 641 DPSKISYIHPSLEPILNVTYGCIVYQEQVMQIVQQIGGYSLGRADLVRRAMSKKKMSVME 700 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +++ FI GA NG+ + A I++L+ FA+Y FNKSH+ AY+V++Y Sbjct: 701 EERNNFIYGLKDEEGNVLIKGALANGVDEKSANEIYDLMIDFANYAFNKSHSVAYSVVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++K +YP EF+A+ ++ M + +++ + ++ ++ NI+++PPSVN F V ++ Sbjct: 761 RTAFLKRYYPKEFMASQISSFMSSPKQVALYAEELKRLNIKLLPPSVNESRNKFTVEEDA 820 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGAL 891 + + L A+K VG I+EA +K F S+ DF R V+S +N+R LESL+ AGA Sbjct: 821 VRFGLKAVKNVGDNFIDAIVEARKEKKFTSMTDFIRRVVEVNSSAINKRALESLIKAGAF 880 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R + L + I + Q KN ++F +D+ L + + Sbjct: 881 DFLPGNRAKYLAVYERILESVQSGIKNNVKGQFSMFNE----KTDEDDLPNLKDFDEKTK 936 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTR 1010 E +LG Y SGHPL+ Y+ + + G N++++ ++ K+ T+ Sbjct: 937 LNMEYEMLGIYASGHPLNPYRNAIENNSSTNTSKIFENPVNGQNVKISGIIKQKRNLITK 996 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 + + T + E FP Sbjct: 997 NNKMMCFATLEDFFGTIELIVFP 1019 >gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2] gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] Length = 1150 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 543/1033 (52%), Positives = 727/1033 (70%), Gaps = 12/1033 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL VHSSYSLLEGALS+ + D + AD QPAIA+TDT NLF ALEFS+K Sbjct: 1 MPD-PGFIHLHVHSSYSLLEGALSIGKLADLVKADAQPAIALTDTGNLFGALEFSEKMSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI G L +D+ + P P IVLL + G++ L+ LVSR +L Sbjct: 60 AGIQPIAGVSLALDLPE---PAGPRGAIRPKRPRIVLLAQSEPGWRNLMRLVSRSFLETA 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + RI WL + +GLI LTGG +GPID+A ++A +RL LFGDRLYV Sbjct: 117 SEDEPRILPDWLADAH-DGLIALTGGPAGPIDKALVSGHPELAAERLDLLASLFGDRLYV 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH +R E+ +++LAY LPLVA+N F S+ DYEAHD L+ +A ++S+ Sbjct: 176 EVQRHDTDAERLAEAGLLELAYAKGLPLVASNEPFFASKTDYEAHDGLLCIAEGRLLSEG 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-D 302 DR R+TP+H K R+EM+++F+DLPEA NTVEIARRC++ ++ PILPRF D D Sbjct: 236 DRRRLTPEHRFKTRAEMLALFADLPEATANTVEIARRCAYRVRTVKPILPRFTSGGGDGD 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 EE EL +A GL RL + A G Y +RL +EL+VI +MKF GYFLIV+D Sbjct: 296 PLAEEAAELERQAKEGLAQRLEKHGPAPGLDIATYEERLAYELSVITKMKFPGYFLIVSD 355 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK ++IPVGPGRGSGAGS+ AY+L ITD+DP+RF LLFERFLNPDR+SMPDFD+DF Sbjct: 356 FIKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPIRFGLLFERFLNPDRVSMPDFDVDF 415 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RRDEVI YVQ +YG +VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+P + Sbjct: 416 CQERRDEVIHYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQN 475 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PV+ QAI D+ R + +R + V R +I+ +LEGL RHASTHAAGIVIGDR L + Sbjct: 476 PANPVTLKQAIEDEPRLQASRDQEEVVKRAFDIAVRLEGLNRHASTHAAGIVIGDRKLHE 535 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + K++ + QRG+ +D+S I Sbjct: 536 LVPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIDKAVKLIHQRGIDLDISKI 595 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +L T+G+FQ+ES+GMR+AL M+ D +ED+IALV+LYRPGP+ NI VY Sbjct: 596 PLDDPKTYAMLGKGETVGVFQVESAGMRRALVDMKADRVEDLIALVALYRPGPMANIPVY 655 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 + K+G+ K +HP+++P LKET GVIIYQEQVMQIAQ ++GYSL EAD+LRRAMGKKI Sbjct: 656 CDCKHGRAKPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGKKI 715 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + EM+KQ+ERF+SG++ GI K A IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K Sbjct: 716 RAEMEKQRERFVSGSAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYAIVAYQTAWLKA 775 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP EFLAASMTL+M N +K+ +F Q+A++ I+++PP++N +F V D +I Y++ A Sbjct: 776 NYPTEFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFAVKDGKIIYAMCA 835 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG ++ A D+PF S DF SR+ K +N+R LESL+ AG D +R + Sbjct: 836 IKGVGGAAVDALVAARGDRPFRSFADFASRLPVKLVNKRTLESLMAAGCFDVLEKNRARA 895 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 ++++I AQ VE N + ++F G + + + + + S R + E +GF Sbjct: 896 FAAIESIVAEAQRVEANAQSGQNDMFG--SGPSAVSLPIPEVAPWLPSERLQKEYDAIGF 953 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 + +GHPLD Y L+KM ++ + + A G RLAA VVSKQ+++T+ G+R+G V Sbjct: 954 FLTGHPLDDYADALKKMRVQSFSDFSRAVRSGAAAGRLAATVVSKQERRTKSGTRMGIVG 1013 Query: 1020 FSEPAKEYEANFF 1032 S+P+ YEA F Sbjct: 1014 LSDPSGHYEAVIF 1026 >gi|85859457|ref|YP_461659.1| DNA polymerase III subunit alpha [Syntrophus aciditrophicus SB] gi|85722548|gb|ABC77491.1| DNA polymerase III alpha subunit [Syntrophus aciditrophicus SB] Length = 1155 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 411/1036 (39%), Positives = 620/1036 (59%), Gaps = 22/1036 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+G + + +++ K A+A+TD N+F ++F Q AC GI+P Sbjct: 5 TFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + + + T G + T +++L +GYQ L++L S YL D Sbjct: 65 IIGCELYVAPKTRFEKT--GGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYL-DGFYYRP 121 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ +GLI L+ +G I + + A ++++FG+ Y+ + Sbjct: 122 RVDKELLKKYH-KGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIME 180 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ +++++ +P+ ATN+ +L+ ED E+H+VL+ + + DR R Sbjct: 181 NGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRMR 240 Query: 248 VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + D Y ++ +M +F+ PEA+ENT EIA RC+ + LP+F + Sbjct: 241 FSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEV----SSDET 296 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ L A+ GL R+ +G + Y +RL EL +I M F+GYFLIV+DF+ Sbjct: 297 LEDRLEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSDFVS 356 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ NIPVGPGRGS AGS+ AYALTITDIDP+R+ L FERFLNPDR+SMPD DIDFC + Sbjct: 357 YAKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPE 416 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R ++IRYV KYG ++V+QIITFG +QA+A +RDVGRAL +PY +VD + KL+PN Sbjct: 417 GRGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNI 476 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + + R +EA D + +LL++S+ LEGL RHAS HAAG+VI D PL + VP+ Sbjct: 477 SLDDA-MEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPL 535 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y+ + D+ F+M + GL KFDFLGLKTLT+++ +L F+ + G +DL +P + Sbjct: 536 YKSPKDDVTTQ-FSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKNLPLN 594 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL+ T G+FQLES GM++ L M+PDCIED+IAL++LYRPGP++ I + R Sbjct: 595 DADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPEFIAR 654 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K GK I+ ++ +LKET GVI+YQEQVMQIA +++ YS+SEAD LR+ MGKK + Sbjct: 655 KQGKTPIIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKKDTAK 714 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+ ++ +F+ GA NGI + I+E + FA YGFNKSH+ AYA+++YQTA++K HYP Sbjct: 715 METERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLKAHYP 774 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEF+AA +T E DN +KI K+ ++ I I+PP +N DF V NRI + LAAIK Sbjct: 775 VEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLAAIKN 834 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + F S EDFC+R D KK+N+RVLESL+ GA D G R QL+ Sbjct: 835 VGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRRRQLMS 894 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVRFENEQR 957 +NI + +Q +K++ +K + F + ++ + + + +E+ Sbjct: 895 EYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWDPKELLAHEKE 954 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LGFY +GHPL+ Y + + + + LA +V ++ TRK + + Sbjct: 955 FLGFYVTGHPLEGYASKISMVANTDSAGILEKGDKEPVSLAGIVSGIREVFTRKKEIMAY 1014 Query: 1018 VTFSEPAKEYEANFFP 1033 V+ + + FFP Sbjct: 1015 VSLEDLKGATDVIFFP 1030 >gi|167465076|ref|ZP_02330165.1| DNA polymerase III DnaE [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1218 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 373/1058 (35%), Positives = 600/1058 (56%), Gaps = 44/1058 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA ++++ ++ A A+A+TD ++ + F + GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + N+ + P + ++LL GY+ L++L S +L + Sbjct: 62 PIIGCEVYFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L +EGLI L+ + + + + A K ++ +FG+ Y+ +Q Sbjct: 118 PRIDAEHLAA-HSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQD 176 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++L+ +PL+ATN+ ++ E D+E DVL+ + V +DR + Sbjct: 177 HGMMEQKKVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLK 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T YLK R M ++F+ +PEA+ NT ++A +C +++ ILP F E Sbjct: 237 MGTSQLYLKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSF---EPIPESLT 293 Query: 307 EENELRNKAVA---GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L+ + G + + Q+L +EL+VI M FS YFLIV DF Sbjct: 294 AAEYLKQLCLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDF 353 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A + I GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF Sbjct: 354 IRYAHEQGIMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFN 413 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRDEVI YV KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+ KLIPN Sbjct: 414 DERRDEVIDYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHL 473 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ +S RE P LL +++++EG+ RHASTHAAG+VI PL+ V Sbjct: 474 GMTID-HALEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYV 532 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602 P+ + P+TQ++M+ +E GL+K DFLGL+TL++++++L Q G VD + Sbjct: 533 PLQ-EGTEQTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTD 591 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 D +TY LL+ T G+FQLES GMR+ L+ ++P EDII++++LYRPGP++ I Y Sbjct: 592 KSDPKTYELLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYI 651 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+ + + V HP ++ +LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + Sbjct: 652 ACKHKQTEPVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKR 711 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D+Q+ F+ G+ G + A ++++++ +FADYG+ ++HA AY V+++QTA++K H Sbjct: 712 EVLDEQRSHFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAH 771 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK------------- 829 YP F+A+ +T N K+ ++ + R+ + ++PP +N V F Sbjct: 772 YPRHFMASMLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPAR 831 Query: 830 --------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 + I + LAAIK VG + +++ + F SL DFC RVD + Sbjct: 832 YAGEPAEEGMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLR 891 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 N+RV+ESL+ AGA D R QL+ LD+ + A K + + ++F + Sbjct: 892 ICNKRVIESLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW 951 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 ++ + + + + E+ ++G Y SGHPLD ++ +L ++ + + + Sbjct: 952 -EVEVPDVPMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEV 1010 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A MV S + T++G + ++ + + E FP Sbjct: 1011 VVAGMVASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1048 >gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 1139 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 534/1032 (51%), Positives = 698/1032 (67%), Gaps = 15/1032 (1%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + SP F+HL++HS+YSLLEGA+ + +I A+ PAIA+TDT NLF ALEFS+ Sbjct: 1 MSDSPPKFIHLRLHSAYSLLEGAIRIKDIPKLCKANGMPAIALTDTANLFGALEFSETLA 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GIQPI GC L + + D +G ++ LL GY+ L++L S +L Sbjct: 61 KEGIQPITGCTLPVLL-DTSDEPTRGPIRREPSGNLALLAKDERGYENLMKLSSLAFLGP 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + ++E EGLI LTGG G ++R A + LL K++FGDRLY Sbjct: 120 DAAEPAHVTMEKVEEF-QEGLICLTGGPDGLVNRLIEAGQPDAAAELLLRLKRIFGDRLY 178 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V LQRH ++ E +++LAY HELPLVATN F E +YEAHD L+ +A V Q Sbjct: 179 VELQRHDLPREQIVEGPLIELAYKHELPLVATNEPYFTRESEYEAHDALICIAAGAYVVQ 238 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R+TP H K++ EM ++F+DLPEA+ENTVEIARRC++ Q PILP+F Sbjct: 239 SDRRRLTPQHRFKSQDEMAALFADLPEAIENTVEIARRCAYRPQTRNPILPKFA------ 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E +ELR +A GL +RLA + ++YR RL+FEL+VI +M F GYFLIVAD Sbjct: 293 AGTSEADELRRQAEEGLTMRLA--TLEAVAPEEEYRARLNFELDVIIKMDFPGYFLIVAD 350 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDF Sbjct: 351 FIKWAKGQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDF 410 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRRDEVIRYVQ +YG ++VAQIITFG LQA+A LRDVGR LQMPY QVDRLCKL+PN+ Sbjct: 411 CQDRRDEVIRYVQARYGEDKVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNN 470 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA PV+ +AI + R +E + AD +V +LLEI Q LEGLYRHASTHAAG+VIGDRPL + Sbjct: 471 PAAPVTLPEAIKGEPRLQEEQRADETVAKLLEIGQSLEGLYRHASTHAAGVVIGDRPLDE 530 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L +++ LA+R +++DL + Sbjct: 531 LVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDRAVKLLARRDIQIDLLNL 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D +T+ +L T+G+FQLESSGMR L ++ D EDIIALV+LYRPGP+DNI Y Sbjct: 591 PLADEKTFAMLGRGETIGVFQLESSGMRDVLRKLEADRFEDIIALVALYRPGPMDNIPSY 650 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+G EK +HPL++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 651 VKRKHGTEKPDYLHPLLEPVLKETHGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKI 710 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K EM+ QKERF++GA I K A +IFEL+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 711 KAEMEAQKERFVTGAVAKQIDKAQAASIFELVDKFAGYGFNKSHAAAYALVAYQTAWLKA 770 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++PVEFLAASM+L++ N +K+ F Q+A + +++ P +N F V D I Y+LAA Sbjct: 771 NHPVEFLAASMSLDLGNTDKLGLFKQEAERLGLKVRRPCINRSEGLFGVADGEILYALAA 830 Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK VG HI+E PF L DF R++ + +N+R E+L AGA D +R Q Sbjct: 831 IKNVGLQAMEHIVEVRREGGPFRDLFDFARRINPRLINKRTFENLARAGAFDALNPNRAQ 890 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 +L + D + A + R +K +F E G + L R E +G Sbjct: 891 VLAAADLLLGTANVAAQERESKQVGLFGEESGVAAAHPALPAIEPWLPMDRLTEEFNAVG 950 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY SGHPLD Y+ L++ G+ Y E + ++A V +KQ++K++KG+ +++ Sbjct: 951 FYLSGHPLDDYRTALQRAGVVTYAELLGKTS-TAAKIAGTVTAKQERKSKKGNPFAFLSL 1009 Query: 1021 SEPAKEYEANFF 1032 S+P ++E F Sbjct: 1010 SDPTGQFEIVVF 1021 >gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] Length = 1169 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 636/1030 (61%), Positives = 786/1030 (76%), Gaps = 6/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L I+ K AD QPAI I DTNNLF+ALEFSQKA G+Q Sbjct: 21 PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL IDM+D + +G F +P+IVL+ +T +GY RL+ELVSR YL +G Q Sbjct: 81 PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI SWL GT GLI LTG +GP+D A S +AE RL +LFGDRLYV LQ Sbjct: 141 QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLQALIELFGDRLYVELQ 200 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY ++PLVATN + F S DY+AHD LMAVAH+ +VS R R Sbjct: 201 RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+ PILPRF D + E Sbjct: 261 LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320 Query: 308 ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR +A GLE RLA+ +A GY +DYR+RL FEL VI RMKF GYFLIVADFI+ Sbjct: 321 AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD Sbjct: 381 WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+ Sbjct: 441 RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP Sbjct: 501 PTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D Sbjct: 561 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVGKRGIHIDLASIPLD 620 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R Sbjct: 621 DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E Sbjct: 681 KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA KNG+SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP Sbjct: 741 MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMTL+M N +KI F QDA + IQ++ PSV T F+ GDNRIYYSLAA+KG Sbjct: 801 VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+ Sbjct: 861 VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD I +AQ ++N+ + ++F T +KI L ++ +S + E +VLGFY S Sbjct: 921 LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYTPWLASEKLHREFQVLGFYLS 980 Query: 965 GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y +L KM ++ + + RLA V SKQ++KTR G+++G V FS+ Sbjct: 981 AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040 Query: 1023 PAKEYEANFF 1032 + ++EA F Sbjct: 1041 ASGQFEAVLF 1050 >gi|322420562|ref|YP_004199785.1| DNA polymerase III subunit alpha [Geobacter sp. M18] gi|320126949|gb|ADW14509.1| DNA polymerase III, alpha subunit [Geobacter sp. M18] Length = 1156 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 405/1033 (39%), Positives = 613/1033 (59%), Gaps = 18/1033 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+GA+ + ++L K+ PA+AITD N+F LEF KA GI+PI Sbjct: 6 FVHLHLHSQYSLLDGAIRIGDLLKKVKDCHMPAVAITDHGNMFGTLEFFLKAKEKGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I T ++LL G++ L LVS Y D + R Sbjct: 66 LGSEVYIAPHSRTLKQAPTAADPVTSYHLILLCENMTGFKNLSYLVSAGY-KDGFYRRPR 124 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L + EGLI+L+ G + N A + + F Y+ LQ ++ Sbjct: 125 IDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARDAASWYAENFPGSYYIELQENK 183 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ +++++A LPLVATN+ +L++ED AH++L+ + +S R + Sbjct: 184 LPEQDIANKRLLEIAREMNLPLVATNDCHYLNQEDARAHEILLCIQTGKTMSDPTRMAFS 243 Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + Y+K EM F P+ALENTV+IA RC+ P + + + Sbjct: 244 VDEFYVKTPEEMAKAFHYAPDALENTVKIAERCNLEFDFKTYYFPAYEAPPGE----TLD 299 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +L +A GL +RL + I Y RL EL+ I +M F GYFLIVADFI Sbjct: 300 QQLEREATEGLVLRLEKIRIKYNLTEDQEKGYWDRLRIELDCIRQMGFPGYFLIVADFIN 359 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DFCQD Sbjct: 360 WAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQD 419 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG E+V QIITFG++ A+ +RDVGRAL + + VD++ KL+P Sbjct: 420 RREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGDVDKIAKLVPEVLGI 479 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + + + +E ADP V ++ ++ +LEGL RHASTHAAG+V+ R + + P+ Sbjct: 480 TLEKA-LEQEPKLKELMDADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPV 538 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y+D ++ TQ++MK++EK GL+KFDFLGLK LT++ + + + D++L+ D Sbjct: 539 YKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRAGKDPNFDITLLRDD 598 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D E+Y LL T G+FQLESSGM++ L ++P C EDIIA+ +LYRPGP+ + + + Sbjct: 599 DEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI 658 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+++ V P ++P+LK+T GVI+YQEQVMQI++ L+GYSL AD+LRRAMGKK Sbjct: 659 ERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDA 718 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E+M K++++F+ G+ K G+ IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K H Sbjct: 719 EQMAKERDKFLIGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKAH 778 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEF+AA +T +M N +K+ K D R+ I+++PP +N F+V + + + L A+ Sbjct: 779 YPVEFMAALLTEDMANTDKVVKSIGDCREMGIEVLPPDINESLRSFRVLEKAMRFGLGAV 838 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 K VG I+EA D+PF + DFC RVD +++N+RV+E+L+ GA DC G R QL+ Sbjct: 839 KNVGEGAIEAIIEARGDEPFKDIFDFCERVDQRRVNKRVIEALIKCGAFDCTGAKRAQLM 898 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVL 959 +L++ Q V++ R + ++F + G+ L + R E+ + Sbjct: 899 AALEDAAVNGQRVQQERESAQASLFGAAEIQRGSNGSGNRLPDIPEWDEKYRLGCEKEAI 958 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ +GHPLD Y +R+ + + I++ + S ++ T+KG R+G+V Sbjct: 959 GFFITGHPLDRYVADMRRFSSVDCTSILEAKEKSEIKICGVPTSLKEIMTKKGDRMGFVA 1018 Query: 1020 FSEPAKEYEANFF 1032 + E F Sbjct: 1019 LEDLVGSVEVVVF 1031 >gi|210621647|ref|ZP_03292734.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275] gi|210154667|gb|EEA85673.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275] Length = 1192 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 388/1066 (36%), Positives = 601/1066 (56%), Gaps = 57/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +EK+ F HL VH+ YSLL+G + ++ + A+AITD +F A++F + A A Sbjct: 4 MEKN--FTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKA 61 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + K+T++ +VLL GY+ LI++VS+ Y +D Sbjct: 62 EGIKPIIGCEVYTAPR---KLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSY-VDG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R + L++ ++GLI L+ +G + RA + A K + ++ +FG+ Y Sbjct: 118 FYYKPRTDMDELKK-HSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYY 176 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ ++VV+L+ +PLVATN+ ++ ++D + D+LM + + Sbjct: 177 LEIQDHGLPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDD 236 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R + + + YLK+R EM +F +L EAL+NT EIA RC+ + H LPR+ E Sbjct: 237 ENRMKFPSDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEG- 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 R GL R + ++Y++RL++ELN I M + YFLIV Sbjct: 296 ---YTTNGYFRELCQKGLVERYGEDC------PEEYKERLEYELNTIENMGYVEYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID Sbjct: 347 DFINFAKQNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDV R L + Y++ D++ K IP Sbjct: 407 FCYERREEVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPF 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ + E +D +++IS++LEG RHASTHAAG+VI P+ + Sbjct: 467 ELGMTID-KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDE 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------K 595 VP+Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + Sbjct: 526 YVPLYK--HQDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEH 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D S + +DD E + L+ TLG+FQLESSGMR ++ ++P+ EDI+A +SL+RPGP+ Sbjct: 584 IDFSKMEYDDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPM 643 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D+I Y KN EK+ I+ + P+L+ T G ++YQEQVMQ+ + L+GYS +D++RR Sbjct: 644 DSIPTYIENKNNPEKVTYINDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRR 703 Query: 716 AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763 AM KK + M+++++ FI G +NGIS+ A IF+ + FA Y FNK Sbjct: 704 AMSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNK 763 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAY V++Y+TA++K HYPVEF+AA MT M N +K+ ++ ++ I + PP +N Sbjct: 764 SHAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINK 823 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I + LAA+K VG +I++ + F DF R+D+K N+RV+ Sbjct: 824 SFSKFSVEGDSIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVV 883 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--- 939 ESL+ GA D +R L+ +++ + K ++F + Sbjct: 884 ESLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQL 943 Query: 940 ---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------ 990 L + R E+ VLG Y SGHPL YK L + ++ Sbjct: 944 STNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKTY 1003 Query: 991 ---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + MV++K+ T++ + ++T + E FP Sbjct: 1004 MKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFP 1049 >gi|225028022|ref|ZP_03717214.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353] gi|224954622|gb|EEG35831.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353] Length = 1160 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 367/1047 (35%), Positives = 579/1047 (55%), Gaps = 39/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + +L + ++AITD ++ ++F +KA GI+P Sbjct: 2 AFTHLHVHTEYSLLDGSSKIKELLPRAKELGMDSLAITDHGVMYGVIDFYKKAKEVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + +VLL +GY+ L+++V+R + + Sbjct: 62 ILGCEIYVAPGSRFDR--EQGRGEDRYYHLVLLAENNQGYKNLMKIVTRGFT-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ EG+I L+ +G I A + +FG+ ++ LQ Sbjct: 119 RVDYEVLEKYH-EGIIALSACLAGEIPNKILKEDFDGARAAANKMRDIFGENNFFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + +++L+ +P+V TN+ ++ EED HD+L+ + VS +DR R Sbjct: 178 HGIRQQTQVNTSLIRLSRELGIPMVVTNDVHYIREEDAVPHDLLLCIQTGKKVSDQDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK+ EM +F EA++NT +IA RC+ + +P+F E D Sbjct: 238 YEGGQYYLKSEEEMQKVFPYAREAMDNTHKIAERCNVEIVFGEQKVPKFDVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L+ GL R Q+ ++RL +EL+ I M + YFLIV DFI++ Sbjct: 294 AFSYLKELCETGLVKRYGDP------PPQELQERLSYELSTIKNMGYVDYFLIVWDFIRF 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK I VGPGRGS AGS+ +Y L IT+IDP+R+ L+FERFLNP+R+SMPD DIDFC +R Sbjct: 348 AKSQGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLIFERFLNPERVSMPDIDIDFCYER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QI+TFG++ A+ A+RDVGR L +PY QVD + K+IP + Sbjct: 408 RQEVIDYVYEKYGKDKVVQIVTFGTMAARMAVRDVGRVLDIPYVQVDNVAKMIPMELGIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++A +D V L+++S +LEGL RH S HAAG+VIG +PL + VP+ Sbjct: 468 IE-KALKSNPELKQAYESDDVVKNLIDMSMRLEGLPRHTSIHAAGVVIGSKPLDEFVPLS 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 R ++ TQF M IE+ GL+K DFLGL+TLT++Q + + ++ G + I +DD Sbjct: 527 RGA-DNVITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAARMIGKKLGHDFSIDTIDYDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y ++ T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y K Sbjct: 586 AKVYEMIGQGKTEGVFQLESAGMKSFMKELKPTNLEDVIAGISLYRPGPMDFIPKYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 ++ I P ++ +L T G I+YQEQVMQI L+GY+L +D++RRAM KK + M Sbjct: 646 QNQDSIQYTCPELEEILAPTYGCIVYQEQVMQIVMRLAGYTLGRSDLVRRAMSKKKGDVM 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++++ F+ G K GI + A IF+ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 706 ARERQNFVYGNEEEGVEGCIKRGIPEETANKIFDEMIDFAKYAFNKSHAAAYAVVSYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W++ +YPVEF+AA +T + N +KI ++ R I I+PP +N V F V + I Y Sbjct: 766 WLRCYYPVEFMAALLTSVITNPKKITEYINTCRVMGISILPPDINEGEVGFSVAGDSIRY 825 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK +G + + + A+ + L+DF R+ SK++N+R +E+L+ +GALD FG Sbjct: 826 GLAAIKSLGKSVIDVMTQEREANGKYKDLKDFMGRLTSKEINKRTIENLIKSGALDSFGK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + + + +K + ++F E+ ++ + + + Sbjct: 886 TRKQQMLVYPVVLEQVNREKKESMSGQMSLFDFFSEEEKKEYEMQYPDVGEYDDAQKLAL 945 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y + K + G + + ++ + Sbjct: 946 EKDVLGIYVSGHPLEKYMDSIEKQTTARSTDFEPDEESGRAIVRDGQHYVVGGLISNITA 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + +VT + E FP Sbjct: 1006 KLTKNNQNMAFVTLEDLYGTVEIIVFP 1032 >gi|317132302|ref|YP_004091616.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] gi|315470281|gb|ADU26885.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3] Length = 1174 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 394/1048 (37%), Positives = 589/1048 (56%), Gaps = 41/1048 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL +HS YSLL+GA + +I + Q A AITD ++ ++F + A AG++ Sbjct: 2 SGFVHLHLHSEYSLLDGACRIGDIPARAKELGQAAAAITDHGVMYGVMDFYKAARKAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + P + +VLL +GY+ LI LVS+ ++ D Sbjct: 62 PIIGCEVYTAARTRHDKQYH---PDASHGHLVLLCENMQGYRNLIRLVSQAFI-DGFYGK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L + EGLI L+ SG + + + A ++ + LFG D Y+ LQ Sbjct: 118 PRVDWDLLTQYH-EGLIALSACLSGEVPKLLLAGNEAGARAKVEAYAALFGEDHFYLELQ 176 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ R + ++++A LPLVATN++ +L +ED +L+ + + V + Sbjct: 177 DHGMPEQQRVNAGLLEIARVSGLPLVATNDAHYLRKEDAYLQKMLLCIQTNRTVDEPGVG 236 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y+K+ EM ++F +PEA +NTV IA+RC+ ILP F +E Sbjct: 237 FPTDEFYMKSEEEMRALFPQVPEACDNTVAIAKRCNVEFTFGKTILPHFEVPGG----QE 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR A GL R ++RLD+EL+VI RM + Y+LIV DFI+ Sbjct: 293 HGAYLRGMAERGLADRYGPQPD------DTVKERLDYELDVITRMGYVDYYLIVHDFIRH 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+ IPVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC +R Sbjct: 347 AKEAGIPVGPGRGSGAGSLVAYCVGITGIDPMRYHLLFERFLNPERISMPDFDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQIITFG++ A+AA+RDVGRA+ +PY++VDR K++P + Sbjct: 407 RQEVIDYVVRKYGSDHVAQIITFGTMAARAAIRDVGRAMGVPYAEVDRTAKMVPAELGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R AD +V RLL+ ++ LEG+ RHASTHAAG+VI P+ VP+ Sbjct: 467 I-AKALEHSEDLRTRYDADETVRRLLDTAKGLEGMPRHASTHAAGVVITRDPVDSYVPLQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 ++ + VTQF M +E+ GL+K DFLGL+TLT+++ + + + Q + I +D Sbjct: 526 KN--DESIVTQFTMTTLEELGLLKMDFLGLRTLTVIRYAENRIREQYVPDFSIEQIALND 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 H Y +L + T G+FQ ES GMR + + P+ +ED+IA++SL+RPGP+++I Y + Sbjct: 584 HAVYDMLGSGNTEGVFQFESPGMRHTIMELGPEHMEDLIAVISLFRPGPMESIPRYIENR 643 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + EK+ HPL+ +L T G I+YQEQVM+I + L GYS AD++RRAM KK M Sbjct: 644 HHPEKVAYRHPLLKDILDVTYGCIVYQEQVMEIVRKLGGYSYGRADLVRRAMAKKKAAVM 703 Query: 726 DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 ++++ F GA +NG+ ++ A IF+ ++ FA Y FNKSHAAAYA++S Sbjct: 704 QQERDHFIHGLRREDGTFECVGAVRNGVDESTANAIFDEMSSFASYAFNKSHAAAYALVS 763 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HYP E+ AA +T ++N K+ ++ + + +I I+PP VN F V N Sbjct: 764 YQTAYLKCHYPKEYFAALLTSVLENSAKVSEYINECVRLHIGILPPDVNESMNGFTVSGN 823 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L A+K +G R ++ A + PF S DF R LNRR+LESL+ GA D Sbjct: 824 NIRFGLDAVKNLGRGFIRSLVRERAENGPFASFRDFVRRALPYDLNRRMLESLIKCGAFD 883 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 Y R QL+ + + + KN + ++F + L+ R Sbjct: 884 SLHYKRRQLMLGYEALLAQEETTRKNNLSGQVSLFGTPAAPTDKQENLKDAEEFAPRERL 943 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAMVVSKQ 1005 E+ VLGFY +GHP++ Y+ +R++ + E G ++ LA +V SKQ Sbjct: 944 AYEKEVLGFYLTGHPVERYRAAIRRLKLPSVGTILEHEEHISNDADGTSVSLAGIVQSKQ 1003 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + + T + + E FP Sbjct: 1004 TKITKNNETMAFCTLDDGSGTIELIVFP 1031 >gi|317052727|ref|YP_004113843.1| DNA polymerase III subunit alpha [Desulfurispirillum indicum S5] gi|316947811|gb|ADU67287.1| DNA polymerase III, alpha subunit [Desulfurispirillum indicum S5] Length = 1163 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 411/1048 (39%), Positives = 612/1048 (58%), Gaps = 34/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA+ + ++ K PA+A+TD N+F A++F ++ AGI+P Sbjct: 2 SFVHLHLHTMYSLLDGAIKIPELVKKAKEYGMPAVAMTDHGNMFGAVDFYKQCTKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + ++ + + +VLL GY+ LI +VS+ YL + Sbjct: 62 ILGCEVYVSPGS-MREKRNAEGVYEGAYHLVLLAENMTGYRNLIYMVSQGYL-EGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L+E +EG+I L+ G + ++ A + L + ++FG+ ++ LQ Sbjct: 120 RIDKELLREC-SEGIIALSACLGGEVPNQLLAGDTEGARRSALEYLEIFGEGNFFLELQE 178 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + D+ Q++ LA +P+VATN+ +L+ ED +AHD+L+ + + + R R Sbjct: 179 NGMDDQRAVNRQLIALAEETGIPMVATNDCHYLNREDAKAHDILLCIQTQSNFDDEKRFR 238 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ M F + +A+ NTV+IA RC+ L++ LP++ + Sbjct: 239 FDSDQLYFKSPETMHKDFGHIKDAIANTVKIAERCNVQLEMGKVYLPKYDIP----AEHT 294 Query: 307 EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ + + GL R AQ + Y Y +RL+ EL+VI M F GYFLIVADFIQ Sbjct: 295 LESYIGEVSRKGLLERFAQFDRLGLTYDRPAYEERLEIELDVINSMGFPGYFLIVADFIQ 354 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W K +IPVGPGRGS AGS+ AYAL ITDIDP+ ++LLFERFLNP+R+SMPD DIDFC + Sbjct: 355 WGKDQDIPVGPGRGSAAGSLVAYALKITDIDPIPYNLLFERFLNPERVSMPDIDIDFCMN 414 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV+ KYG + V QI+T+ SLQAK LRDV R + +PYS D+L KL+PN Sbjct: 415 RRGEVIDYVRKKYGDQNVCQIVTYASLQAKGVLRDVCRVMGLPYSDGDKLSKLVPNKLGI 474 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +AI+ + + +EA A P + LL+ S LEGL+R A HAAGIVI D P+ P+ Sbjct: 475 TLD-EAISMEPKLKEAAAAMPHGENLLKYSLALEGLFRQAGMHAAGIVITDEPIYTYAPL 533 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIP 602 R PV QF+ E GL+KFDFLGLKTLT++ ++ F+ Q K D+S I Sbjct: 534 SRGP-EGEPVCQFDKDKAEDIGLVKFDFLGLKTLTVIDEACRFVQQTQKLPAKFDISAIA 592 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 DD TY LL + + GIFQLES GMR L ++P EDI+A+++LYRPGP+ + + Sbjct: 593 MDDQPTYDLLCSGKSAGIFQLESGGMRSLLTKLKPSNFEDIVAVLALYRPGPLGSGMVDD 652 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +RK G+ +I+ + P ++P+LK+T GVI+YQEQVMQIA+ + GYSL AD+LRRAMGKK Sbjct: 653 FVDRKQGRSEILYLFPELEPILKDTYGVIVYQEQVMQIARTIGGYSLGAADLLRRAMGKK 712 Query: 721 IKEEMDKQKERFIS-------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +EEM KQKE F+ GA G A +F+L+A FA YGFNKSH+AAYA+++ Sbjct: 713 KEEEMVKQKEIFLHGDGDKVPGAKAMGFDLKKAEQVFDLMAYFAGYGFNKSHSAAYALVA 772 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HYP E +AA ++ EMDN +K+ +F + + +++ PP +N F V ++ Sbjct: 773 YQTAYLKAHYPSELMAALLSCEMDNTDKVVQFINECKSMGLEVHPPHINLSGHSFTVDED 832 Query: 834 R--IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + L AIK VG+ I++ + PF SL DF RVD + +N+RV+E+L+ GA Sbjct: 833 GRSIIFGLTAIKNVGSKAVEAILQERQENGPFTSLYDFTERVDLRSVNKRVVENLIKCGA 892 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSV 945 D +R QL+ +LD+ Q ++K+R ++F S Sbjct: 893 FDSVHANRRQLIGALDHAFSLGQTIQKDREAGQISLFEMEAQDDSSDDLSHHEEYPDVED 952 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 N++ R E+ LGF+ SGHPL+ ++ +L + + +R+A ++ S Q Sbjct: 953 WNTTTRVAFEKECLGFFVSGHPLEPFQSVLEGY-TTPIASVLEAQKKGRVRIAGVLSSLQ 1011 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ G ++ + + + E FP Sbjct: 1012 PKTTKAGKKMAIIVVEDQTAKLEIPIFP 1039 >gi|315187035|gb|EFU20792.1| DNA polymerase III, alpha subunit [Spirochaeta thermophila DSM 6578] Length = 1136 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 420/1032 (40%), Positives = 608/1032 (58%), Gaps = 23/1032 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VHS YSLL+G++ +++ ++ A+A+TD NLF +EF +KA A Sbjct: 1 MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELGMDAVALTDHGNLFGMIEFYKKARA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ PI+GC+ + + ++LL GY L++LV+ YL Sbjct: 60 AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L EGLI L+ G I A +R ++ +FG DR Y Sbjct: 115 FYYKPRID-DGLLAAHHEGLIALSSCLGGEIPSLILGRRIDKARERARFYRDIFGPDRFY 173 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R +V+L+ ++PLVATN+ +L +E EAH+VL+ + + +S Sbjct: 174 LELQDHGLSEQKRVNKALVELSKELDIPLVATNDVHYLLKEHAEAHEVLLCIGTNKKLSD 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +DR R T + YLK+ EM +F +PEALENTV IA RC+F + P+LP + E Sbjct: 234 QDRMRFETQEFYLKSPEEMARLFEGIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E LR+ GL+ R Q ++ R+R D EL++I +M F+GYFLIV Sbjct: 294 D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +AK+ IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID Sbjct: 344 DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+EVI YV KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ + Sbjct: 404 FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +AI + R D + RL +I L+GL RHASTHAAGIVIG L+ Sbjct: 464 ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+YRD ++ TQ++M+ +E GL+K DFLGLKTLTL+ + + + D I Sbjct: 521 YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T+ LL + +FQ ES GM+ L +P+ IE++IAL +LYRPGP+ I + Sbjct: 581 PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G+ KI HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L AD+LRRAMGKK Sbjct: 641 IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M K+KE+FI GA G S+ A +FELL FA YGFNKSHAAAY+V++Y+TA++K Sbjct: 701 PEVMAKEKEKFIKGAVAQGYSRQFAEELFELLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EF+AA++T E+ N +K+ ++ + R I+++PP +N F V D +I Y L Sbjct: 761 HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VGT I+ + PF S DF RVD + +NR+V+E+ + AG D +R +L Sbjct: 821 IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + +L+ + + +++ + +F + ++ ++ + E+ +LGF Sbjct: 881 MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 YFS HPLD + I K T +L ++ + ++ T+KG+R+ + T Sbjct: 941 YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000 Query: 1022 EPAKEYEANFFP 1033 + EA FFP Sbjct: 1001 DYRGSIEAVFFP 1012 >gi|312135078|ref|YP_004002416.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775129|gb|ADQ04616.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1140 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 378/1033 (36%), Positives = 598/1033 (57%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL +GY+ L +VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEA---NIDSDIHHLVLLAMDNDGYRNLSRIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GL+ LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLVALTSCLAGEIPKFILREQKEKLYDAISFYKEVFGENFYFELQNH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELIRLSKKYQVPLVATNDVHYLKREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DP 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A G + + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELAFEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+ Sbjct: 467 DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISNCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++++RFI GA NG+++ A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EERDRFIEGAVANGVNRETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI+ + F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAHILSEREEKGTFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDSIGIYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + + + E + I + ++ + K T+ + + Sbjct: 941 HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFGKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|167771346|ref|ZP_02443399.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM 17241] gi|167665986|gb|EDS10116.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM 17241] Length = 1175 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 393/1044 (37%), Positives = 592/1044 (56%), Gaps = 31/1044 (2%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 L + F HL VH+ YSLL+GA + +++++ A Q A+AITD +F A++F + Sbjct: 7 LCAVMT---DFAHLHVHTEYSLLDGACRIERLIERVKALGQSAVAITDHGVMFGAVDFYK 63 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G++PIIGC++ + + ++ T + ++LL GYQ LI++VS + Sbjct: 64 CAKKHGVKPIIGCEVYVAPRSRFDKQHKIDT---SPYHLILLCKNETGYQNLIKMVSAGF 120 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 ++ RI + L++ EGLI L+ +G I R A++ + ++ LFG Sbjct: 121 -VEGFYSKPRIDRALLEQYH-EGLICLSACLAGEIPRMLAQGDYACAKETAVWYRDLFGA 178 Query: 180 DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ +Q H + +V+LA + LVATN++ ++ + D VL+ + +T Sbjct: 179 DNYYIEIQNHGIRLQQQILPDLVRLAGEIGVGLVATNDAHYIEKADARMQSVLICIQTNT 238 Query: 239 VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V D T + Y+K+R EM +F + P AL+NT++IA +C+ + LP F+ Sbjct: 239 TVDAPGDLEFETEEFYIKSRDEMDELFGNYPGALDNTLKIAEQCNVEFEFGNTKLPLFVA 298 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +D Q R GL R + +RL++ELN+I +M + Y+ Sbjct: 299 PNGEDNQ----AYFRRLCAEGLRRRYGEQPDRS------VTERLEYELNIITKMGYVDYY 348 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI +AK IPVGPGRGSGAGS+ AY + IT IDPLR+SLLFERFLNP+R+SMPD Sbjct: 349 LIVSDFINYAKSVGIPVGPGRGSGAGSLAAYCIGITGIDPLRYSLLFERFLNPERISMPD 408 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC +RR EVI YV KYG + VAQIITFG++ A+ A+RDVGR L M Y QVD + K Sbjct: 409 FDIDFCYERRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRVLGMSYQQVDSIAK 468 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+PN+ + +A + + D V LL++++K+EG+ RHASTHAAG+VI Sbjct: 469 LVPNELKMTLDKA-LAVSADLKTMCAEDKRVAELLDMARKIEGMPRHASTHAAGVVITRD 527 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 P+ VP+Y+ +PVTQF M +E+ GL+K DFLGL+TLT++ + A+ Sbjct: 528 PVDSYVPLYKAE-ETMPVTQFTMTTLEELGLLKMDFLGLRTLTVISYAEKEAAKTHPGFS 586 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD ET+ +LT +G+FQ ES+GMR + + P IED+IA++SLYRPGP+++ Sbjct: 587 ADAVPLDDPETFAMLTKGQCVGVFQFESAGMRAVIAQLGPTSIEDLIAVISLYRPGPMES 646 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y ++ E + HPL+ P+L T G I+YQEQVMQI + L GYS AD++RRAM Sbjct: 647 IPTYIRNRHNPELVTYKHPLLKPILDVTYGCIVYQEQVMQICRALGGYSYGRADLVRRAM 706 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK + M+K++E F++GA +NG+++ A IF+ ++ FA Y FNKSHAAAYA +SYQTA Sbjct: 707 SKKKHDVMEKEREAFVAGAQQNGVARETANQIFDEMSSFASYAFNKSHAAAYAFVSYQTA 766 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP EF+AA +T +DN +K+ ++ + + I+++PP VN F V I + Sbjct: 767 YLKCHYPREFMAALLTSVLDNTDKVIEYIGECNRMGIKVLPPDVNVSVEGFTVSGEEIRF 826 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+K +G R ++ F + DFC R+ K +N+R +ESL+ +GALDC Sbjct: 827 GLLAVKNIGRGFIRELIAERESGGVFQNFSDFCERMYGKDMNKRAVESLIKSGALDCVCK 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R Q+L + I +K N+F G L S E+ Sbjct: 887 NRNQMLSGYEAILDDIDSAQKRNIAGQINLFDTAAGASKPIHILPNVEELEPSKLLAMEK 946 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009 G Y SGHP+ ++ ++ K + + G +R+AA+V S++ K T Sbjct: 947 ETTGLYISGHPMARFQEMVSKNNCTLIADITSAEERGSGVADGTQVRVAAIVNSRRLKST 1006 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 R G + +V + + E FP Sbjct: 1007 RGGEMMAFVRLEDTSGSMEMLVFP 1030 >gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43] Length = 1189 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 605/1031 (58%), Positives = 772/1031 (74%), Gaps = 8/1031 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHSSYSLLEGAL + ++ + AD+QPA+AITDTNNLF ALEFS KA AGIQ Sbjct: 41 PGFVHLRVHSSYSLLEGALPIKTLIKRALADEQPALAITDTNNLFGALEFSIKAMEAGIQ 100 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 P+IGCQLDIDM+D + +PSIVL STA GY+RL LVSR YL + Sbjct: 101 PLIGCQLDIDMEDGAASERRSHRDQLQRLPSIVLYASTATGYERLTALVSRAYLEGDSVE 160 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +SWL+E G +GLI LTG GP+D+ + A +RL K +F DR+Y+ LQ Sbjct: 161 RPHILMSWLEE-GADGLIALTGSVKGPVDQCIRESHPDRAAERLNRLKTVFEDRVYIELQ 219 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R +GYDR ES+++ LAY ++PLVATN + F + +D+EAHD LMAVA + V+S RPR Sbjct: 220 RQQGYDRAHESKMIALAYAADVPLVATNEAFFPTPDDFEAHDALMAVAANAVMSDDRRPR 279 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304 ++ D+ LK+R+EM ++F+D+PEAL NT+EIA+RCS I++ PILPRF E++ D Sbjct: 280 LSVDNCLKSRAEMTALFADVPEALRNTIEIAQRCSAIVETRPPILPRFTGGGEEDPDAAL 339 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E ELR ++ GLE RL + +A+GY DYR+RL EL++I MKF GYFLIVADFI Sbjct: 340 AAEAAELRRQSEEGLERRLERIGLAEGYTHDDYRERLKTELDIIENMKFPGYFLIVADFI 399 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP R+SMPDFDIDFCQ Sbjct: 400 KWAKDHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQ 459 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+V QIITFGSLQA+AALRDVGR L+MPY VDR+CKL+PN+PA Sbjct: 460 DRREEVIRYVQKKYGREQVGQIITFGSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPA 519 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ RF E +P+V+RLL+I+QKLEGLYRHASTHAAGIVIGDRPLSQLV Sbjct: 520 NPTPLNKAIEEEPRFAEEMEKEPAVERLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLV 579 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ F+A+RG+ +DL +P Sbjct: 580 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVGFIAKRGITIDLEGLPL 639 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI VYN Sbjct: 640 DDQPTYEMLSRGETVGVFQVESAGMRKALIGMRPDRIEDIIALVALYRPGPMENIPVYNA 699 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E++ SIHP ID +L ETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKIKE Sbjct: 700 RKHGEEELASIHPKIDGLLAETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIKE 759 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ RF+ GA + +SK A IF+LLAKFA+YGFNKSHAAAY ++SYQTA++K HY Sbjct: 760 EMDKQRARFVEGAVERDVSKPQADMIFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHY 819 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N +K+ F QDA++ I++ PPSV T F+ G+NRIYY+LAAIK Sbjct: 820 PVEFLAASMTLDMSNTDKLNDFRQDAKRLGIEVAPPSVQTSFRHFETGENRIYYALAAIK 879 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG HI+E D F SLEDFC R+D +++NRRVLESL+ AGALDCFG R L+ Sbjct: 880 GVGDAAVEHIVEVRGDTEFASLEDFCVRIDPRQVNRRVLESLITAGALDCFGLDRAALVA 939 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I +AQ ++NR + ++F ++ I L + + + E + LGFY Sbjct: 940 GLDRILGFAQRAQENRISGQSDMFGAGASESAETIHLPDATPWLPAEKLHREYQALGFYL 999 Query: 964 SGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HPLD Y +L KM ++ + + + G RLA V SKQ++KT+ G+++G V FS Sbjct: 1000 SAHPLDSYADLLNKMRVQNWADFQVSVKAGATAGRLAGTVTSKQERKTKTGNKMGIVAFS 1059 Query: 1022 EPAKEYEANFF 1032 + + +YEA F Sbjct: 1060 DSSGQYEAVLF 1070 >gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3] gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3] Length = 1166 Score = 819 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 628/1032 (60%), Positives = 787/1032 (76%), Gaps = 6/1032 (0%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K+P FVHL+VHS+YSLLEGAL L I+ K AD QPAIAITDTNNLF ALEFS+KA G Sbjct: 16 KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNNLFVALEFSEKARDEG 75 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPIIGCQ+ IDMQD + + +P+IVLL + A GY+RL++L+SR YL + Sbjct: 76 LQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYERLVDLISRAYLEGESG 135 Query: 127 Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 SV I +WL+E GLI+LTG S GP+D A + A +RLL K LFGD+LY+ Sbjct: 136 GQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARERLLALKSLFGDKLYIE 195 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQR G+DR E +++ LAY H++PLVATN + F S DYEAHD LMAVAH+ +VS R Sbjct: 196 LQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSR 255 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+TPDHY+K+R EM +F+DLPEALENTVEIA RCS++L+ PILPRF D Sbjct: 256 FRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAA 315 Query: 306 EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR +AV GL++RLA +A GY Q+YR RLDFEL VI RM F GYFLIVADF Sbjct: 316 QRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADF 375 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 376 IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P Sbjct: 436 QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L Sbjct: 496 ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP Sbjct: 556 VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 616 LDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD+Q+ERF+ GA +N +SK A IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H Sbjct: 736 EEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTL+M N EK+ F QDA + I+++ PSV T F+ G+NRIYYSLAAI Sbjct: 796 YPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+ KPF SLEDFC R+D K++NRRVLESL+ AG DCFG R +++ Sbjct: 856 KGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEMI 915 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I Y+Q +++R ++F + +K+ L F +S + E +VLGFY Sbjct: 916 GGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVLGFY 975 Query: 963 FSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020 + HPLD Y+P+L K+ ++ + + A +G RLA V KQ++KTR G+++G VTF Sbjct: 976 LTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKMGIVTF 1035 Query: 1021 SEPAKEYEANFF 1032 S+ + +YEA F Sbjct: 1036 SDASGQYEAVLF 1047 >gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192] gi|306532224|gb|ADN01758.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192] Length = 1136 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 421/1032 (40%), Positives = 609/1032 (59%), Gaps = 23/1032 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VHS YSLL+G++ +++ ++ A+A+TD NLF +EF +KA A Sbjct: 1 MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELDMDAVALTDHGNLFGMIEFYKKARA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ PI+GC+ + + ++LL GY L++LV+ YL Sbjct: 60 AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L EGLI L+ G I A +R ++ LFG DR Y Sbjct: 115 FYYKPRID-DGLLAAHHEGLIALSSCLGGEIPSLILGRQIDKARERARFYRDLFGPDRFY 173 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R +V+L+ ++PLVATN+ +L E EAH+VL+ + + +S Sbjct: 174 LELQDHGLPEQKRVNKTLVELSKELDIPLVATNDVHYLLREHAEAHEVLLCIGTNKKLSD 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +DR R T + YLK+ EM +F D+PEALENTV IA RC+F + P+LP + E Sbjct: 234 QDRMRFETQEFYLKSPEEMARLFEDIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E LR+ GL+ R Q ++ R+R D EL++I +M F+GYFLIV Sbjct: 294 D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +AK+ IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID Sbjct: 344 DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+EVI YV KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ + Sbjct: 404 FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +AI + R D + RL +I L+GL RHASTHAAGIVIG L+ Sbjct: 464 ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+YRD ++ TQ++M+ +E GL+K DFLGLKTLTL+ + + + D I Sbjct: 521 YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +T+ LL + +FQ ES GM+ L +P+ IE++IAL +LYRPGP+ I + Sbjct: 581 PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G+ KI HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L AD+LRRAMGKK Sbjct: 641 IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M K+KE+FI+GA G S+ A +F+LL FA YGFNKSHAAAY+V++Y+TA++K Sbjct: 701 PEVMAKEKEKFITGAVAQGYSRQFAEELFDLLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EF+AA++T E+ N +K+ ++ + R I+++PP +N F V D +I Y L Sbjct: 761 HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VGT I+ + PF S DF RVD + +NR+V+E+ + AG D +R +L Sbjct: 821 IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 + +L+ + + +++ + +F + ++ ++ + E+ +LGF Sbjct: 881 MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 YFS HPLD + I K T +L ++ + ++ T+KG+R+ + T Sbjct: 941 YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000 Query: 1022 EPAKEYEANFFP 1033 + EA FFP Sbjct: 1001 DYRGSIEAVFFP 1012 >gi|120602759|ref|YP_967159.1| subunit alpha [Desulfovibrio vulgaris DP4] gi|120562988|gb|ABM28732.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris DP4] Length = 1175 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 419/1040 (40%), Positives = 604/1040 (58%), Gaps = 23/1040 (2%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E FVHL H+ YSLL+GA+ L ++ + A AITD NLF A F + Sbjct: 10 ENMSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 69 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + D T++ T +VLL EGY L+ LV+R + + Sbjct: 70 GIKPIIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGFT-EGF 125 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ L+E ++GLI L+ +G + R + +F R Y+ Sbjct: 126 HYKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLE 184 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ + ++ ++++LA LPLVATN+ +L D EAHD+L+ + T V Sbjct: 185 LQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPK 244 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R T + Y K+ EM F+ +PEA+ NT IA C+ + P + E Sbjct: 245 RMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGM-- 302 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E + A GL+ RL + + Y RL++EL VI M F GYFLIV DF Sbjct: 303 --TLDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDF 360 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC Sbjct: 361 INWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFC 420 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D Sbjct: 421 ERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDL 480 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+ + DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ + Sbjct: 481 KMTIK-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYL 539 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIP 602 P+Y+ + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD Q DL + Sbjct: 540 PLYKG-KKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLS 598 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660 DD ETY L + T G+FQ+ESSGMRQ L ++P C +DIIA+++LYRPGP+ + +V Sbjct: 599 LDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDE 658 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G+ + P ++ L+ T GVI+YQEQVMQIAQ++ Y+L AD+LRRAMGKK Sbjct: 659 FIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKK 718 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I E M +++ +F+ GA KN I K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K Sbjct: 719 IAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLK 778 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 H+PVEF+AA +T EM N +K+ K+ + +I+++ P+V +F V + RI + L Sbjct: 779 VHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLG 838 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG R I++A + P+ SL D C RV+ +K+ +RV+E+L+ GA DC G +R Sbjct: 839 GIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRA 898 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFE 953 +L SLD + AQ K R + ++F K + + Sbjct: 899 GMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLR 958 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGF+ + HPL Y+ L ++ + EE+ G IR A +V + ++ T+KG Sbjct: 959 FEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQ 1018 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 R+ + + E FFP Sbjct: 1019 RMAFAGVEDLTASAEVVFFP 1038 >gi|253577284|ref|ZP_04854602.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] gi|251843288|gb|EES71318.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14] Length = 1110 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 397/1060 (37%), Positives = 594/1060 (56%), Gaps = 47/1060 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA L +++ K AA A+A+TD ++ A+ F + GI+P Sbjct: 38 SFVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKP 97 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + +G + ++LL GY+ L++L S +L + Sbjct: 98 IIGCEVYFTAGSRKE---RGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHL-EGFHYKP 153 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + EGL+ L+ G + + A+K L ++ FG+ Y+ LQ H Sbjct: 154 RIDWDAL-QRHREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDH 212 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 ++ +VQLA LV TN++ +LS+ED E DVL+ V V +DR + Sbjct: 213 GIPEQKKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKM 272 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK EM +F LPEA NT +IA C L+ ILP + Sbjct: 273 HTNQLYLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAY---RPIPEGHTA 329 Query: 308 ENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G ++ + QRL +EL +IA M FS YFLIV DFI + Sbjct: 330 GSYLAELCQQGLVDRYGELDVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAF 389 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N I GPGRGS AGS+ AY L ITD+DP++++LLFERFLNP+R++MPD DIDF +R Sbjct: 390 AHRNGIATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDER 449 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ +VD++ KLIP Sbjct: 450 RDEVIAYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMT 509 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + V RLL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 510 IE-RALKESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPLQ 568 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + +TQ++M+ +E GL+K DFLGL+TL+++++ ++++ Q G D L+P +D Sbjct: 569 -EGSEHTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAPDFRLVPDND 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L T G+FQLES+GMR+ L+ M+P EDII+L++LYRPGP++ I Y K Sbjct: 628 PATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPMEFIPKYIAGK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+ + HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E + Sbjct: 688 HGQITVEYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+Q+ F+SG+ + G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 748 DEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------- 834 +F+A+ +T + K+ ++ + R+ I ++PP VN V F Sbjct: 808 QFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAALSGEA 867 Query: 835 ---------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 I + LAAIK VGT I+ ++PFDSL DFC RVD Sbjct: 868 KGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKERPFDSLLDFCRRVD 927 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+RV+ESL+ GA D R QLL LD + A K R +F + Sbjct: 928 LRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFDFVESP 987 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 D I ++ + + E+ +LG Y SGHPLD + +L G+ + Sbjct: 988 NWD-IEYPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGEGVDRLMDLAEAPDDT 1046 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A MVVS + T++G + ++ + + E FP Sbjct: 1047 RTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFP 1086 >gi|78357239|ref|YP_388688.1| DNA polymerase III subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219644|gb|ABB38993.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1165 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 415/1037 (40%), Positives = 616/1037 (59%), Gaps = 23/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA+ L ++ +K A+AITD N++ A+ F Q A G++ Sbjct: 2 PQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVYFYQMAQKMGLK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + D+ T +VLL GY L +LV+R + + Sbjct: 62 PIIGCEVYVAHGDHTDKT---GDMAKKRYHLVLLAQNRTGYHNLAKLVTRGFT-EGFHYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L++ +EG+I L+ +G I RA A + + +++ DR Y+ +Q Sbjct: 118 PRVSKDLLRQY-SEGIIALSACLAGEIPRALLNEGMDRAIELAREYAEIYPDRFYLEVQS 176 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++LA LPLVATN+ +L + D EAHD L+ + V+ + R R Sbjct: 177 NGLKEQDELNDKLIELAGITGLPLVATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERRMR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ EM + F+ +PEA+ENTV+IA + L + P + E Sbjct: 237 FETTELYYKSPDEMAAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGM----T 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+E R + GL+ RL Y QRL+ EL+VI M F GYFLIV DFI W Sbjct: 293 LEDEFRKLSHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFINW 352 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R Sbjct: 353 AKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVSMPDIDVDFCERR 412 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI+YV KYG + VAQI TFG ++AKA +RDV RAL + + DR+ KLIP D Sbjct: 413 RGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARALGLSFQDGDRIAKLIPEDLKMT 472 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + DP + +LL+IS +LEGL RHASTHAAG+VI D+P+ + +P+Y Sbjct: 473 IK-KALDMEPDLKTLYTNDPQIRKLLDISMRLEGLSRHASTHAAGVVISDKPMFEYLPLY 531 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 RD + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +A +G DL + +D Sbjct: 532 RDKKGG-IVTQFDMKIVEKVGLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSLED 590 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L + T G+FQ+ESSGMRQ L ++P C +D+IA+++LYRPGP+ + +V + Sbjct: 591 KETYELYSRGETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEFIK 650 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E Sbjct: 651 RKHGEVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLLRRAMGKKNAE 710 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M +++ +F GA +N + + A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 711 AMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHY 770 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA MT EM+N EK+ K+ + ++++ P+V +F V D ++ Y L IK Sbjct: 771 PVEFMAALMTSEMNNQEKVLKYVACCKDMGVEVLAPNVQISRREFSVLDGKVTYGLGGIK 830 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I+ A D PF S+ D C RV+ +K+ +RVLE+L+ +GA DC G +R ++ Sbjct: 831 NVGDEAIREIVRAREEDGPFQSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTRQGMV 890 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956 LD + AQ K + + ++F+ + L + + + E+ Sbjct: 891 AGLDTVVARAQKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEEKLRKEK 950 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGFY S HPL Y+ + ++ + E+ + + A +V S ++ T+KG R+ Sbjct: 951 EALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKEILTKKGHRMA 1010 Query: 1017 WVTFSEPAKEYEANFFP 1033 + + E FFP Sbjct: 1011 FCQVEDLTASGECIFFP 1027 >gi|312127676|ref|YP_003992550.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777695|gb|ADQ07181.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1140 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 384/1033 (37%), Positives = 600/1033 (58%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL +GY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GL+ LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + R + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K++P P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMVPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V R+++ ++ LEG+ RHAS HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q + ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMRELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ + F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--VIKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + K + E A + I + ++ + K T+ + + Sbjct: 941 HPLERYTEEISKYNVTPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|146296832|ref|YP_001180603.1| DNA polymerase III DnaE [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410408|gb|ABP67412.1| DNA polymerase III catalytic subunit, DnaE type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1141 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 382/1033 (36%), Positives = 600/1033 (58%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA+ + ++ +++ +IAITD ++ ++F + A GI+P Sbjct: 2 SFVHLHVHTEYSLLDGAVRIESLFERVRQLNMHSIAITDHGAMYGVVDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL EGY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRSRFDKEP---NIDNDIHHLVLLAIDNEGYKNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GLI LT +G I + + + + +K +FG Y LQ H Sbjct: 118 RVDREILSKY-SKGLIALTSCLAGEIPKFILRDQKEKLMDAIGFYKDVFGCNFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ S++++L+ +++P+VATN+ +L ED E HD+L+ + + +R Sbjct: 177 GIDEQRFVNSELIRLSKKYQIPVVATNDVHYLKREDREIHDILLCIQTGKTIHDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PE+L+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTSEFYLKSAQEMEEVFGYIPESLKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A AG E + RL ELNVI M F+ YFLIV DFI +A Sbjct: 294 FEYLKELAFAGFEK-------RYSKENKAAYDRLLMELNVIKDMGFTEYFLIVHDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV NKYG ++V+QIITFG++ A+A++RDVGR L +PY+QVD + K++P P + Sbjct: 407 QEVIDYVTNKYGKDKVSQIITFGTMAARASIRDVGRVLGVPYAQVDEIAKMVPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V R+++ ++ +EG+ RH S HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEVNHDLKKIYEQNETVKRIIDTARSIEGMPRHTSVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ R +++DL I ++D Sbjct: 524 ARTEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELIKKHRKIEIDLDKIDYNDR 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 SVYQFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 KEKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NKEKIEYLHPKLEPILNVTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++++RFI GA NG+ + A IFE++ FA Y FNKSHAAAYA+++YQTA++K ++ +E Sbjct: 704 EERDRFIEGAVANGVDRQTAEKIFEIIEDFASYAFNKSHAAAYAILAYQTAYLKKYFTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ + F L DF RVD+ +N+R++E+L+ +GA D +R LL S+ Sbjct: 824 ENVISHILKEREQNGEFKDLYDFVMRVDTNTVNKRIIENLIKSGAFDFTKINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I Q +KN F + + + + + E+ +G Y SG Sbjct: 884 EDILTIKQSQKKN--ANQITFF-EISDDQTKIFSYKDLPEPTTEELLQMEKDTIGIYISG 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y ++ K + E I + ++ + K T+ + + Sbjct: 941 HPLEKYGDLISKYNVVSLAELSNMTEDDEYKYQQILVCGILKEVKIKLTKNNQTMAFAKI 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDTLEVLFFP 1013 >gi|46579764|ref|YP_010572.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str. Hildenborough] gi|46449179|gb|AAS95831.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233555|gb|ADP86409.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris RCH1] Length = 1164 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 418/1037 (40%), Positives = 603/1037 (58%), Gaps = 23/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ L ++ + A AITD NLF A F + GI+ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + D T++ T +VLL EGY L+ LV+R + + Sbjct: 62 PIIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGFT-EGFHYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L+E ++GLI L+ +G + R + +F R Y+ LQ Sbjct: 118 PRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQS 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++LA LPLVATN+ +L D EAHD+L+ + T V R R Sbjct: 177 NGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ EM F+ +PEA+ NT IA C+ + P + E Sbjct: 237 FETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGM----T 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + E + A GL+ RL + + Y RL++EL VI M F GYFLIV DFI W Sbjct: 293 LDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINW 352 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC+ R Sbjct: 353 AKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERR 412 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D Sbjct: 413 RTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 472 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +P+Y Sbjct: 473 IK-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLY 531 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605 + + VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD Q DL + DD Sbjct: 532 KG-KKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDD 590 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L + T G+FQ+ESSGMRQ L ++P C +DIIA+++LYRPGP+ + +V + Sbjct: 591 AETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIK 650 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + P ++ L+ T GVI+YQEQVMQIAQ++ Y+L AD+LRRAMGKKI E Sbjct: 651 RKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAE 710 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M +++ +F+ GA KN I K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+ Sbjct: 711 AMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHF 770 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA +T EM N +K+ K+ + +I+++ P+V +F V + RI + L IK Sbjct: 771 PVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGGIK 830 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I++A + P+ SL D C RV+ +K+ +RV+E+L+ GA DC G +R +L Sbjct: 831 NVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAGML 890 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQ 956 SLD + AQ K R + ++F K + + E+ Sbjct: 891 ASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEK 950 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGF+ + HPL Y+ L ++ + EE+ G IR A +V + ++ T+KG R+ Sbjct: 951 EALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQRMA 1010 Query: 1017 WVTFSEPAKEYEANFFP 1033 + + E FFP Sbjct: 1011 FAGVEDLTASAEVVFFP 1027 >gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter K84] Length = 1187 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 633/1032 (61%), Positives = 808/1032 (78%), Gaps = 7/1032 (0%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P FVHL+VHS+YSLLEGAL L IL K A D QPAIA+TDTNNLF ALEFSQKA G Sbjct: 38 DTPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEG 97 Query: 67 IQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 +QPIIGCQ+ IDM+D ++ +G + +PSIVL +T GY+RL++LVSR YL +G Sbjct: 98 LQPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEG 157 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 Q+V I SWL+EIGTEG+I LTG GP+D A + A RLL K+LFGDRLY+ Sbjct: 158 NQAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIE 217 Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 LQRH YDR E +++ LAY HELPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 218 LQRHGTYDRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTR 277 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDI 303 R+TPDHYLK+R++M +F++LPEALENTVEIARRCSF+L+ PILPRF + ++ Sbjct: 278 FRLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEA 337 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ELR +A+ GL+ RLA +A GY +DYR+RL+FEL+VI RMKF GYFLIVADF Sbjct: 338 DRAESAELRAQAIEGLDQRLASLGMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVADF 397 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 398 IKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P Sbjct: 458 QDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 517 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P QAI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L Sbjct: 518 ANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 577 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP Sbjct: 578 VPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLASIP 637 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN Sbjct: 638 LDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 697 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 698 ARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIK 757 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD+Q+ERF+ GA KNG+SK + IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H Sbjct: 758 AEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 817 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLAASMTL+M N EK+ F QDA++ I+++ PS+ T F+ G+NRIYY+LAA+ Sbjct: 818 YPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALAAL 877 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG + HI+E D+PF +EDFC R+D K++NRRVLESL+ AGA DCF R QL+ Sbjct: 878 KGVGESAVDHIVEVRGDQPFAGIEDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQLI 937 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 +D I YAQ ++N+ + ++F + +KI+ F+ +S R E +VLGFY Sbjct: 938 GGIDRIMGYAQVAQENKRSGQHDMFG-SAASGPEKISFPPFTPWLASERLLREFQVLGFY 996 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 + HPLD YK +L KM ++ + + A ++ +N RLA V+SKQ++KTR G+++G F Sbjct: 997 LTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTVISKQERKTRTGNKMGIFVF 1056 Query: 1021 SEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1057 SDASGQFEAVLF 1068 >gi|312622501|ref|YP_004024114.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202968|gb|ADQ46295.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1139 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 386/1033 (37%), Positives = 599/1033 (57%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+ ITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL +GY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GLI LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + R + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + V ++++ ++ LEG+ RHAS HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEINHELKKIYEQNDMVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIGYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+A+ +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I A K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--AIKQAKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + K I E + I + ++ + K T+ + + Sbjct: 941 HPLEKYTEEISKYNITPLSEISGMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|257439793|ref|ZP_05615548.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] gi|257197702|gb|EEU95986.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii A2-165] Length = 1171 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 380/1046 (36%), Positives = 588/1046 (56%), Gaps = 41/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA ++ ++D++ Q AIA TD ++ ++F + A AGI+P Sbjct: 13 DFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKP 72 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + N+ ++LL GY+ L +LVS ++ + Sbjct: 73 IIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLAKLVSAAFI-EGFYSKP 127 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ EGLI L+ +G I +A + A+ L ++ LFG+ Y+ LQ Sbjct: 128 RVDKQLLEQYH-EGLICLSACLAGEIPQAILSGDYERAKASALWYRDLFGEGNYYIELQD 186 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 H + Q+++LA +P+ ATN+S +L +ED + +L+ + + DR Sbjct: 187 HGLEEDNIVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQAILLCIQTGKTMQDADRME 246 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y+K EM +F+ +P+A NT IA +C+F + +P + D Q Sbjct: 247 FQTDEFYVKTTDEMYDLFAMVPDACANTRIIADQCNFDFEFGNTKIPYYKAPGGMDNQ-- 304 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 GLE R Q + RL++E++VI M ++ Y+LIV D++ + Sbjct: 305 --AFFEKLCWEGLERRYGSNV------PQANKDRLNYEISVIKTMGYTNYYLIVWDYVNY 356 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +R Sbjct: 357 AKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYER 416 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG++ A+ A+RDVGR + MPY +VD + K +P + Sbjct: 417 RQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQEVDVVAKQVPAELKMT 476 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ R DP V LL+ + K+EG+ RHASTHAAG+VI P +P+ Sbjct: 477 IK-HALEVSPELRRMYETDPKVTELLDTAMKVEGMPRHASTHAAGVVITPEPTDYYLPL- 534 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 LPVTQFNM IE+ GL+K DFLGL+TLT+++ + + ++ ++ + +DD Sbjct: 535 -ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAELAIQKKEPDFSIAKLDYDDP 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ETY +L+ T G+FQLESSGM+Q L G+QP +ED+IAL+SLYRPGP+D+I Y ++ Sbjct: 594 ETYKMLSRGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRH 653 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +KI P + +L T G I+YQEQVMQI + L+G+S +AD +RRAM KK M+ Sbjct: 654 EPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVME 713 Query: 727 KQKERF----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 ++E F G NGIS+ IA I++ ++ FA Y FNKSHAA YA +++QT Sbjct: 714 AEREHFVHGCTDPGNECPGCVANGISEKIANEIYDEMSSFASYAFNKSHAACYAYVAFQT 773 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835 A++K HYP EF+AA +T +DN K+ ++ + + I+++PP +N F D RI Sbjct: 774 AYLKCHYPSEFMAALLTSVLDNTGKVIEYSGECARLGIKVLPPDINISGSGFTAEDSGRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+K VGT +E +KP+ SL DFC R+ +LNRR +ESL+ AGA D G Sbjct: 834 RFGLNAVKNVGTRLIERSVEERQEKPYTSLYDFCKRMHGTELNRRTVESLIKAGAFDNLG 893 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLEKFSVENSSVR 951 +R L+++ + + K + + + ++F+ G + +D ++ + Sbjct: 894 SNRRSLVEATEGVLKSIESDSRKNLDGQIDLFSMMSGTDNTSAADSYEIKPCPEYTHAEL 953 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLAAMVVSKQQK 1007 + E+ V G Y SGHPLD Y+ + + E +++R+ +V + Sbjct: 954 LQQEKEVSGLYLSGHPLDAYREQSAQFATHTIKALTGEDANVPDNSHVRIVCTIVKSKMV 1013 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ S + + + + E FP Sbjct: 1014 TTKTNSMMAYTSVEDLTGTMEVIVFP 1039 >gi|284047929|ref|YP_003398268.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM 20731] gi|283952150|gb|ADB46953.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM 20731] Length = 1138 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 382/1036 (36%), Positives = 586/1036 (56%), Gaps = 31/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++ PA+AITD ++ +EF Q+ AGI+PI Sbjct: 4 FVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I +L + + ++ + ++LL GYQ L++LVS ++ R Sbjct: 64 IGCEVYITSGSHLDKSLETRS---KLYHLILLAENRTGYQNLMKLVSIG-EVEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L+ +EGLI L+ +G + R + AEK +L + +FG D Y+ +Q H Sbjct: 120 IDKDVLRRY-SEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++ +LA H + LVATN+ ++ +ED D+L+ + +T R R Sbjct: 179 GLPEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRF 238 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +YLK+R EM +F + EAL+NT+EIA RC+ L+ +LP F + Sbjct: 239 NNDSYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGE----TM 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR G R + R+R+++EL +I +M +SGYFLIV DFI ++ Sbjct: 295 DGYLRKLCEEGFPSRYPEDDGTA-------RKRMEYELGIIRQMGYSGYFLIVWDFINYS 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++IPVGPGRGS AGS+ AY IT IDPL+++L+FERFLNP+R+SMPD D D C +R Sbjct: 348 RRHDIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 V+ Y+ KYG VAQIITFG+L AKAA++DVGRA+ +P + V+++ KLIPN P + Sbjct: 408 HLVVDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTL 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + RE R DPS+ +LL+ +QK+EG+ RH STHAAG+VI L+ VP+ Sbjct: 468 KGA-LEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQI 526 Query: 548 DVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 SD TQ++ E GL+K D LGL+TLT++ +L + + +VD+ I Sbjct: 527 TSSSDDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTEVDIRTID 586 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 D +T +L T +FQ+ES GM + ++ + P+ ED+I LV+LYRPGP+ + + Sbjct: 587 LHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAED 646 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + ++G+ +HPL++P++ +T GVI+YQEQVMQI L G++L EAD+LRRAMGKK Sbjct: 647 FIAGRHGRRTAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRAMGKK 706 Query: 721 IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + +D KE+F+ GA +GIS+ + IF LL FA YGFNKSH+AAYA+++Y TAW+ Sbjct: 707 KAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYHTAWL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YPVE++AA + + +K+ + R IQ++PP +NT F V + I + L Sbjct: 767 KANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGHTIRFGL 826 Query: 840 AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK VG I+E PF DF RVD K+N+RV+E+L+ G+++ FG R Sbjct: 827 GAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNGFGLRR 886 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QLL +D + A +++R +F E ++ I + + E+ + Sbjct: 887 SQLLAIMDPALEAAASEQRDRITGQLGLFGEEDIASANTIPIPNLPEIPKAEILRLEREL 946 Query: 959 LGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD Y+ LR++ + E G I + ++ + + T+ G R+ Sbjct: 947 IGFYVTGHPLDAYRNALRRLTPLIRCTE-ENYKDGERIAVGGIITDLRLRSTKNGDRMAS 1005 Query: 1018 VTFSEPAKEYEANFFP 1033 + FP Sbjct: 1006 FVLEDLTGSLTVIAFP 1021 >gi|164686689|ref|ZP_02210717.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795] gi|164604079|gb|EDQ97544.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795] Length = 1178 Score = 817 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 386/1061 (36%), Positives = 595/1061 (56%), Gaps = 54/1061 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL VH+ YSLL+G + ++ + ++AITD N+F ++F ++A GI Sbjct: 2 SSEFAHLHVHTEYSLLDGFSRVKKLIKRTKELGMKSVAITDHGNMFGVIDFYKEAKKQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +P+IGC+L + +T++ ++LL GYQ LI+LVS Y +D Sbjct: 62 KPVIGCELYTAQRS---LTDKDPNFDKRYGHLILLAENMTGYQNLIKLVSISY-VDGFYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ + L+E +EG+I L+ +G + A + + A++ LT+ ++FG Y+ L Sbjct: 118 KPRVDIEALRE-HSEGIICLSACLAGDVSNALMNRNYEKAKEIALTYNEIFGQGNFYLEL 176 Query: 187 QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + +V+L+ +PLVATN+ ++ + D +AHDVL+ + ++ R Sbjct: 177 QDHNLPEQKEVNASLVKLSKELNIPLVATNDIHYVDKADSKAHDVLLCIQMGKTLNDPAR 236 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + YLK+R EM +F EAL+NT +IA RC+ + LP + E Sbjct: 237 MRFGTEEFYLKSREEMEELFPYALEALDNTAKIAERCNVEFDFNTIHLPNYEVPEG---- 292 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L GL R +Q+ RL +EL VI +M + YFLI DFI Sbjct: 293 YTTSGYLEELCYKGLYERYEN-------PSQEILDRLKYELGVINKMGYVEYFLITWDFI 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AK+N I VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R+SMPD DIDFC Sbjct: 346 NFAKENGIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVSMPDIDIDFCY 405 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L +PY++VD++ K IPN Sbjct: 406 ERREEVIDYVKRKYGEDHVAQIITFGTMGAKLAIRDVGRVLDIPYNKVDKIAKEIPNALG 465 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + + D ++ IS++LEG+ RHASTHAAG+VI P+ + VP Sbjct: 466 MTID-KALETNPNLKSLYEQDQETKTIINISKELEGMLRHASTHAAGVVISKNPIDEYVP 524 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPF 603 +Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD G K+D S + + Sbjct: 525 LYK--HQDAISTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEKNHGRKIDFSKMDY 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + + LL++ TLG+FQ+ES+GMR ++ ++P EDI+A +SLYRPGP+D+I Y Sbjct: 583 DDPKVFELLSSGNTLGVFQMESAGMRSFMKQLKPSNFEDIVAGISLYRPGPMDSIPTYLE 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K+ EKI IH + P+++ T G +IYQEQVM++ + L GYS +D++RRAMGKK + Sbjct: 643 YKHNPEKITYIHEKLKPIMEVTYGCLIYQEQVMEVVRELGGYSYGRSDLVRRAMGKKKMD 702 Query: 724 EMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 M+++++ FI G +NG+ + A IF+ + FA Y FNKSHAAAY V Sbjct: 703 VMEEERQYFIHGKTDENGNIEIAGCVRNGVDEQTANKIFDDMIDFAKYAFNKSHAAAYGV 762 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 I+Y+TA++K HYPVEF+AA +T M N +K+ ++ ++ NI+++ P +N F V Sbjct: 763 IAYETAYLKAHYPVEFMAALITSVMGNTDKVVEYIRECNALNIKVLKPDINKSFAKFSVE 822 Query: 832 DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 DN I + LAA+K VG +I+ E + F + R+DSK +N+RV+ESL+ G Sbjct: 823 DNNIRFGLAAVKNVGVNIINNIVIEREQNGEFTDFINLIKRLDSKDINKRVIESLIKCGG 882 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---------TLE 941 D GY+R L+ + + + K ++F G ++ ++ Sbjct: 883 FDEMGYNRASLMMGYEKVLESVSLERKKNIKGQISLFDGLDGLGQNEEIDRFENSTTSIA 942 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--------- 992 + E+ VLG Y SGHPL Y+ L ++ Sbjct: 943 SIQEFEEREKLALEKEVLGMYVSGHPLSEYEKELETRTSLNTKKLNEVKENLDKYLAMDQ 1002 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 N+ + M+ +K+ + T++ + ++ + E FP Sbjct: 1003 ENVIIGGMISNKRIQTTKRNEIMAFLEVEDLYGSIEVIVFP 1043 >gi|108762214|ref|YP_633981.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622] gi|108466094|gb|ABF91279.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622] Length = 1185 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 410/1048 (39%), Positives = 612/1048 (58%), Gaps = 37/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA+ + +++ + ++A+TD N+F A++F +KA AGI+P Sbjct: 2 SFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + + + ++L+ EGY L L S Y+ Sbjct: 62 ILGMEAYVA-----GPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHG-FYYHP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 RI L E ++GL LT G + A F A + +K +F ++ +Q Sbjct: 116 RIDKKVLAE-HSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQS 174 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + + QL+ ++PL AT ++ ++ ED AH++LM +A ++ R + Sbjct: 175 NGMPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMK 234 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + D Y+ + +EM+ F D+PEA+ NT IA +C+ L++ P+LP F + Sbjct: 235 HSTDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPD----SHT 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++ + A GL R + A Y + Y+ RL E+ VI +M F GYFLIV DFI Sbjct: 291 PDSYMAELAYEGLRERFTELAATVTYPIDREQYQARLALEIGVIQKMGFCGYFLIVQDFI 350 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAKK NIPVGPGRGSGAGS+ AYAL ITD+DP+ ++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 351 NWAKKMNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQ 410 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI+YV KYG V QIITFGSL+AK+ LRDV R +P+S+ DR+ KL+P Sbjct: 411 DRRDEVIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLN 470 Query: 485 HPVSLQAIADDSRFREARLADPSV----------DRLLEISQKLEGLYRHASTHAAGIVI 534 + +AI + R +E ++ +LEI+ LEGL+R HAAG+VI Sbjct: 471 ITL-REAIEMEPRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVI 529 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 D+PL + VP+Y+ +TQF +E AGL+KFDFLGLKTLT++Q +LD + + Sbjct: 530 ADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHG 589 Query: 595 KVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 K IP +D +T+ L+ T GIFQ+ESSG + + ++P+C ED+IA +LYRPG Sbjct: 590 KDIPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPG 649 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D+ +V + NRK+G+EK+ HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L AD Sbjct: 650 PLDSGMVDVFINRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRAD 709 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK E M ++ F+ G +KN + +A IF+L+ KFA+YGFNKSH+AAY + Sbjct: 710 LLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGL 769 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++ TAW+K HYP EF+AA ++ E DN +K+ K +AR+ ++++PP VN ++F Sbjct: 770 VTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAV 829 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +I + L AIKGVG I+EA D F SL DFC RVDS+K+NR+V+E+LV AG+ Sbjct: 830 SGKIRFGLGAIKGVGEGAIESILEARKDGSFKSLFDFCERVDSRKVNRKVMEALVKAGSF 889 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSV 945 D SR Q+ +++ +K++ ++F G SD K + Sbjct: 890 DFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVEVED 949 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E+ +GFY SGHPL Y L++ + + + + +A +V + Sbjct: 950 WSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYA-RPITAVQRARKDDKLTVAGIVTVLR 1008 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+ G R+ WVT + + E FP Sbjct: 1009 ERPTKTGKRMAWVTIEDLSGSIELVCFP 1036 >gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512] Length = 1165 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 643/1031 (62%), Positives = 810/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K A D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EM +F+DLPEALENT+EIARRCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E ELR +AV GL++RL+ ++ GY +DYR+RL+FEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E D PF +EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ +N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 1163 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 594/1031 (57%), Positives = 772/1031 (74%), Gaps = 8/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA G+ Sbjct: 16 TPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNLFGALEFAQKASKDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+DI D+ + + +VLL +T EGY ++ LVSR +L Sbjct: 76 QPIIGCQVDIAFGDHNDNGRSVNRRVALDLAPVVLLAATEEGYANIVRLVSRAFLETPAG 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 V + SWL + ++ +I+L+GG+ GPI RAF + AE RL ++ FGDRLYV L Sbjct: 136 DPVHVEASWLPPL-SKDVIVLSGGALGPIGRAFAADRPDRAEARLGFLREAFGDRLYVEL 194 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QR GY+R E++ V LAY +LPLVATN + FL ED+EAHD L+A+A ++S DR Sbjct: 195 QRQAGYNRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDDRR 254 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQ 304 R+TPDH++K+R+EM ++F+DLPEAL+NTVEIA RCS+ Q APILPRF + D Sbjct: 255 RLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPILPRFTGESDDAEAAV 314 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 +EE +EL +A GL++RL +A+GY + Y +RL++E+ +I RMKF GYFLIVADFI Sbjct: 315 QEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITRMKFPGYFLIVADFI 374 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ Sbjct: 375 KWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQ 434 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +PA Sbjct: 435 DRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQNPA 494 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 495 NPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSELV 554 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ +A++GV++DLS +P Sbjct: 555 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVARKGVEIDLSHVPL 614 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI YN Sbjct: 615 DDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALYRPGPMENIPTYNA 674 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+E Sbjct: 675 RKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIRE 734 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HY Sbjct: 735 EMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHY 794 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAAIK Sbjct: 795 PVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFEVGEKQIFYSLAAIK 854 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG HI++ A+KPF+SLEDFC RVD + +NRRVLESL+ AGA+DCFG R + Sbjct: 855 GVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAGAMDCFGRERPAMSA 914 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +D I +AQ ++N + +IF G + + L + + S E + +GFY Sbjct: 915 GMDRIMGFAQRTQENAASGQSDIFG-LSGAPKETLILPQAAPWLPSEMLHREFQAVGFYL 973 Query: 964 SGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HPLD Y+ +L +M ++ + + A RG N RLA V ++Q++KTR G+++G V S Sbjct: 974 SAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERKTRTGNKMGIVQLS 1033 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1034 DASGQFEAVLF 1044 >gi|330837734|ref|YP_004412375.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374] gi|329749637|gb|AEC02993.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374] Length = 1170 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 394/1029 (38%), Positives = 603/1029 (58%), Gaps = 23/1029 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA S+ + K A+AITD N+F A +F + AA I+ Sbjct: 2 SGFVHLHNHTDYSLLDGAGSIPKYIAKAKELGMNALAITDHGNMFGAHKFYKACKAADIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ + + + +G P ++LL +GY L+EL S Y ++ Sbjct: 62 PIIGCEFYVAPESHT--LREGVEGKPRAYHLILLAMNEKGYHNLMELNSISY-VEGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 RI L E EG++ L+ G I N + A+K L +F G R Y+ +Q Sbjct: 119 PRIDHE-LIEQHNEGVLCLSACLGGEIASLLKDNRYEDAKKAALWHASVFDGGRYYLEIQ 177 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + +L+ +PLVATN+ ++++ D AHD+L+ + ++ DR Sbjct: 178 DHGLPEQKTVNQALARLSTETGIPLVATNDIHYINKSDANAHDILLCIGMGKKKNEADRM 237 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + ++Y+K+ EM F P+A+ENTV+IA C+ + P LPRF + Sbjct: 238 RFHSAEYYMKSAEEMEKQFLWCPQAVENTVKIADLCNLEIHFPGPRLPRFRVPKGF---- 293 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +++ LR+ + GL R A+ D +RLD+EL+VI +M F GYFLIV D+I Sbjct: 294 TDDSYLRHLSHEGLARRYAE-------VTPDLEKRLDYELDVIIQMGFQGYFLIVRDYIY 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+ +IPVGPGRGSGAGS+ AY ITD+DP++++LLFERFLNP+R +MPDFDIDFC + Sbjct: 347 WAKQRDIPVGPGRGSGAGSLVAYCTEITDVDPIKYNLLFERFLNPERKTMPDFDIDFCFE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R EVI YV YG + VAQI TFG+L+AKA ++DV R L +P+ + +R+ K+IP+DP Sbjct: 407 HRQEVIEYVTEHYGEDHVAQIATFGTLKAKAVVKDVARVLDIPFEESNRIAKMIPDDPKM 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + ++ A L + + +LEGL RH STHAAG+VIG++ L VP+ Sbjct: 467 TLKKA-LEQSPELKQVADAGGIYGELFDAAFRLEGLNRHTSTHAAGVVIGEKKLLTYVPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD ++ TQF M +E+ GL+K D LGLKTLTL++ ++D + + + I +D Sbjct: 526 YRDAKTGAISTQFTMDQLEENGLVKMDLLGLKTLTLIKHTVDLVHKTNPGFSIEDINEED 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +T+ +L + +FQ ES+GM++ L P+ IED++AL +LYRPGP+D I + K Sbjct: 586 EKTFDMLRRGDSACVFQFESTGMQKILRDALPNSIEDLVALNALYRPGPMDYIPQFVESK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+ I HP ++ LK T GVI+YQEQVM++AQ++ GY+L AD+LRR M KK EE+ Sbjct: 646 NGRMPITYAHPDLEETLKTTYGVIVYQEQVMKVAQIIGGYTLGAADILRRIMSKKKAEEL 705 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 Q+ +F+ GA G + +A IF++L FA YGFNKSHA AY+VI+YQTA++K +YP Sbjct: 706 AAQEVKFVEGALAKGYQEKLARYIFKMLEPFAGYGFNKSHAVAYSVIAYQTAFLKANYPA 765 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA++T E++N +K ++ ++A+ I+++PPS+N F + +I Y LA IK V Sbjct: 766 EFMAANLTNEINNPDKFSEYLREAKHMGIEVLPPSINYSERQFNAVEGKIVYGLAGIKNV 825 Query: 846 GTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G A I+ P++S DF RVDS+ +N ++LESL+ AG D +R L+++ Sbjct: 826 GEGVADLIIRERNEHGPYESFIDFLVRVDSRAMNSKLLESLIKAGTFDSMEENRPTLIEN 885 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++ YAQ ++++ + ++F +G D T+ + + E E+ +LGFY S Sbjct: 886 MEAAVIYAQKQKESKESGQSSLF---EGDDIDSFTMTRHPDWEMREKLEIEKALLGFYIS 942 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 GHPLD+Y+ ++ + + R I L AM+ + T+K + +G++ + + Sbjct: 943 GHPLDLYRDAWKRSVLVDFSRPERFPRNRQISLVAMITDIRTLMTKKQTMMGFLELVDFS 1002 Query: 1025 KEYEANFFP 1033 EA FP Sbjct: 1003 GTLEATCFP 1011 >gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4] gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] Length = 1179 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 643/1029 (62%), Positives = 793/1029 (77%), Gaps = 6/1029 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS+YSLLEGAL L IL K+A+DQQPAIAITDTNNLF ALEFSQKA + G+Q Sbjct: 33 PGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLFIALEFSQKALSDGLQ 92 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQL IDM+D + +G + P+IVLL + GY+RL++LVSR YL QS Sbjct: 93 PIIGCQLSIDMEDANE-EKRGNSSLAKYPAIVLLAADPAGYERLVDLVSRAYLQGDNTQS 151 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I SWL+EIGT+GLI LTG + GP+D A RL T K LFGDRLY+ LQR Sbjct: 152 VHITASWLEEIGTDGLIALTGATGGPVDLPVKDGHHAQALSRLQTLKSLFGDRLYIELQR 211 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H+GYDR ES+++ LAY H++PLVATN + F S +DY+AHD LMAVAH+ +VS R R+ Sbjct: 212 HQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAVAHNAIVSDDRRFRL 271 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TPDHYLK+R EM ++F DLPEALENTVEIA RCSF+L PILPRF D + E Sbjct: 272 TPDHYLKSRKEMQTLFRDLPEALENTVEIASRCSFVLDTRNPILPRFTGGSDDPEEAERA 331 Query: 309 NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR +A+ GL+ RLA+ +A GY ++YR RLDFEL VI RMKF GYFLIVADFI+W Sbjct: 332 EAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMKFPGYFLIVADFIKW 391 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDR Sbjct: 392 AKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDR 451 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVDR+CKL+PN+PA+P Sbjct: 452 REEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDRICKLVPNNPANP 511 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +AI ++ +F+E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 512 TPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPM 571 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF R +++DL+ IP DD Sbjct: 572 YRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRLRDIEIDLATIPLDD 631 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN RK Sbjct: 632 EKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARK 691 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIKEEM Sbjct: 692 HGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKEEM 751 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ RF+ GA KNG+SK A NIF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYPV Sbjct: 752 DKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPV 811 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N EK+ F QDA + I+++PPSV T F+ G NRIYYSLAA+KGV Sbjct: 812 EFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTGPNRIYYSLAALKGV 871 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ D PF LEDFC R+D K++NRRV ESL+FAGA DCFG R +LL + Sbjct: 872 GDAAVEHIVTVRGDTPFADLEDFCLRIDPKQINRRVFESLIFAGAFDCFGRDRPELLAGM 931 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I YAQ ++N + ++F T ++I+ ++ S + E +VLGFY S Sbjct: 932 DRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEKLMREFQVLGFYLSA 991 Query: 966 HPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YKP+L KM ++ + + A +G RLA V+SKQ++KTR G+++G VTFS+ Sbjct: 992 HPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKTRTGNKMGIVTFSDA 1051 Query: 1024 AKEYEANFF 1032 ++EA F Sbjct: 1052 TGQFEAVLF 1060 >gi|302337842|ref|YP_003803048.1| DNA polymerase III subunit alpha [Spirochaeta smaragdinae DSM 11293] gi|301635027|gb|ADK80454.1| DNA polymerase III, alpha subunit [Spirochaeta smaragdinae DSM 11293] Length = 1141 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 405/1029 (39%), Positives = 603/1029 (58%), Gaps = 20/1029 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA ++ +++K + +AITD N+F L F + A I Sbjct: 2 PDFVHLHNHTDYSLLDGAAPIDKMVEKAVSFGMKHLAITDHGNMFGVLRFYKACKAHEIN 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IGC++ + G +VLL +EGY+ LI+L SR Y + Sbjct: 62 PLIGCEVYVAPGSRHVKN--GSEKGNRYQHLVLLARNSEGYKNLIQLCSRGYT-EGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L++ GL L+ +G I ++ AE++ +++LFG + ++ +Q Sbjct: 119 PRIDDELLEQY-NGGLTALSACLAGAIPSMIMNGKAEEAEQKANYYRELFGKEHFFLEMQ 177 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ ++V+++ +PLVATN+ +L D A D+L+ + + ++DR Sbjct: 178 DHGIPEQKTVNKELVRISKKTGIPLVATNDIHYLDRADASAQDILLCIGTNRKRREQDRM 237 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + Y+K++ EM F ++PEAL NT+ +A +C+ + + PILP + + Sbjct: 238 RFHSDQFYMKSQEEMAETFREIPEALSNTLRVAEQCNLEIDLPGPILPEYEIP---PEFE 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR+ GL+ R + QR + EL +I M F GYFLIV DFI Sbjct: 295 NLGDYLRHLTFEGLKKRYP-------SLTDEIVQRAEKELGIINSMHFPGYFLIVWDFIH 347 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+++IPVGPGRGSGAGS+ AYALTITDIDPL++ LLFERFLNP+R+SMPDFD+DFC + Sbjct: 348 YAKQHDIPVGPGRGSGAGSIVAYALTITDIDPLKYQLLFERFLNPERVSMPDFDVDFCFE 407 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG ++V QIITFG+L+AKA ++DV R L +P+++ D++ KLIPND Sbjct: 408 RRQEVIDYVNRKYGKDKVGQIITFGTLKAKAVVKDVARVLDIPFAEADKISKLIPNDLKI 467 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + + + +E L++ +++LEGL RHASTHAAG+VIG + L++ VP+ Sbjct: 468 TIDKA-LEQEPQLKELMDQGGVYGELIDAARRLEGLSRHASTHAAGVVIGRKALTEYVPL 526 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD ++ TQF M +E+ GL+K DFLGLKTLTL++ + D + +R D+ +P DD Sbjct: 527 YRDSKTGSISTQFTMDQLEECGLVKMDFLGLKTLTLIKHTEDLIHRRDKDFDIERVPEDD 586 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T+ LL + +FQ ESSGM+ L+ P IED+IAL +LYRPGP+ I Y K Sbjct: 587 PATFTLLGEGKSTCVFQFESSGMQNILKQAHPTSIEDLIALNALYRPGPMQYIPQYIASK 646 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+++I P ++ +LK T GVI+YQEQVMQ+AQ++ G+SL +AD+LRRAMGKK +EM Sbjct: 647 SGEQEIRYPDPSLEEVLKPTYGVIVYQEQVMQVAQIIGGFSLGKADILRRAMGKKKVKEM 706 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 K K FI GA K G +K A IFE+L FA YGFNKSHAAAY+V++Y+TA++K +YP Sbjct: 707 AKMKLEFIEGAVKKGHTKEHADEIFEMLVPFAGYGFNKSHAAAYSVVAYKTAYLKANYPA 766 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EF+AA++T E++N +K+ + +A+ I ++PP VN +F V D +I Y L IK V Sbjct: 767 EFMAANLTNEINNPDKLAFYIGEAKTMGIDLLPPEVNISEKNFSVSDGKIVYGLIGIKNV 826 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 GT I+ A + PF+ + D RVD K +NR+VLE+L+ GALD FG +R LL++ Sbjct: 827 GTNAVEEIVRAREEGGPFEDIFDLLDRVDMKTVNRKVLETLIECGALDSFGINRSTLLEN 886 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963 L+ + + ++ ++F K L E+ +LGFYF Sbjct: 887 LERVMEVVSKKKEGEQFGQSSLFDDGNEEEMPWKTDLTPAEPLPKMEVLRRERELLGFYF 946 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHP+D +K + I L AMV S + T+KG + ++ + Sbjct: 947 SGHPMDDFKDRWKSAVNIDLSRPDRFIPERTYTLIAMVTSLRTIITKKGRPMAFLQLEDY 1006 Query: 1024 AKEYEANFF 1032 + E+ F Sbjct: 1007 NGKIESVVF 1015 >gi|206602357|gb|EDZ38838.1| DNA polymerase III, alpha subunit [Leptospirillum sp. Group II '5-way CG'] Length = 1201 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 414/1045 (39%), Positives = 611/1045 (58%), Gaps = 21/1045 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA ++ ++ K A+ PAIA+TD NLF A+EF Q A Sbjct: 1 MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIGC++ I + +QG+ ++LL GY+ L+++ Sbjct: 61 HGVKPIIGCEVYITPRSRFDRSDLYFGGDGPHQGRKINNASFHLILLAENDTGYRNLLKI 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 VS +L + RI L L EGLI L+G G I + A F+ Sbjct: 121 VSLSHL-EGFYYRPRIDLELLSRYH-EGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178 Query: 176 KLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG + + +Q + D+ +++ L+ +PLVATN+ +L ED HD+L+ Sbjct: 179 EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + R R + + YLK EM+ F +LPEA+ENT+ IA R + + + Sbjct: 239 LQTGKTLEDPARLRFGSDEFYLKTPREMIRSFEELPEAIENTLRIAERIDVSIDLQTTHM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + GL+ R + A + Y +RL+ E+ VI +M Sbjct: 299 PSYRLDEIQGQTTTVPELFVRTSREGLDARFLENAFSDAEKT-LYLERLEREIQVIQKMG 357 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + GYFLIV DFI+ A++ IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R Sbjct: 358 YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V Sbjct: 418 VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K+IPN + + ++ R DP ++ L +S+KLEG+ RH+S HAAG+ Sbjct: 478 DRVAKMIPNSLDMTLEKA-LEENPDLRSLLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL + VP+ + + VTQF +EK GL+KFDFLGL TLTL+ + + + Sbjct: 537 VISREPLLEHVPLMKGA-NGEIVTQFTKDDVEKVGLVKFDFLGLTTLTLIHGAENRIRAH 595 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 IP DD TY LL+ TLGIFQLES GM + MQP+ ED+IAL++LYRP Sbjct: 596 TPDFSADRIPLDDPRTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GPI++ + + RK +I P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA Sbjct: 656 GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM K +++F+ GA + G K A ++FEL+A FA YGFNKSH+AAYA Sbjct: 716 DLLRRAMGKKKPEEMAKMQDKFVEGAVRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQTA++KTHYP+E AA +T +D+ EKI F A+ I+++ P +N DF + Sbjct: 776 LISYQTAYLKTHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L A+K VG I+EA A D PF DF R+ KK+NRRV+E+L+ A Sbjct: 836 LPGSRILFGLGAVKNVGKQAVDCILEARAQDGPFTDFPDFLKRIVGKKVNRRVIEALIRA 895 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA G R ++SLD++ +A+ + + + +++F+ ++G S L + + Sbjct: 896 GAFRSLGIRRAVAMESLDDLLAWAEKQKSGKGSMQKSLFSEDQGGRSFGPPLREVPEWDE 955 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ LGFY + HP+ Y +L K+ + A G +R+ A+V + ++ K Sbjct: 956 RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLEAISEGETVRVFAVVSALREVK 1015 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG ++ +T + EA FP Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040 >gi|291086960|ref|ZP_06345005.2| DNA polymerase III alpha subunit [Clostridium sp. M62/1] gi|291076483|gb|EFE13847.1| DNA polymerase III alpha subunit [Clostridium sp. M62/1] Length = 1197 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 380/1054 (36%), Positives = 579/1054 (54%), Gaps = 45/1054 (4%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 +Y+ +F HL VH+ YSLL+ + + ++ + ++AITD ++ ++F + A Sbjct: 37 EYM----AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAA 92 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+P++GC++ + + ++LL EGYQ L+++VS + + Sbjct: 93 REAGIKPVLGCEIYVAPGSRFDR--EIGAGEDKYYHLILLAENNEGYQNLMKIVSTGF-V 149 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181 + R+ L+ GLI L+ +G + R + +K L ++ +FG+ Sbjct: 150 EGFYYKPRVDFETLERYSR-GLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGN 208 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ LQ H + +++++ +PLVATN+ ++ ED ++HD+L+ + V Sbjct: 209 FFLELQDHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKV 268 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + ++R R +YLK+ EM SIF EALENT +IA RC+ ++ +P+F Sbjct: 269 ADENRMRYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVPG 328 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K L G R R+RLD+EL+VI M + YFLI Sbjct: 329 G----KTSWEYLNELCEEGFRTRYPDDDGTL-------RKRLDYELSVIQSMGYVDYFLI 377 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD D Sbjct: 378 VWDFIHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDID 437 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC +RR EVI YV KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+I Sbjct: 438 IDFCFERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMI 497 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P D + REA +DP + L+++S++LEGL RH S HAAG+VI + Sbjct: 498 PGDLGMTLDKAL--KTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKV 555 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+ R TQF M +E+ GL+K DFLGL+TLT++Q ++ + +K+DL Sbjct: 556 DEYVPLSRAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDL 614 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + I ++D L T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Sbjct: 615 NKIDYNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFI 674 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN + I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM Sbjct: 675 PKYLKGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMS 734 Query: 719 KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 KK M+K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYA Sbjct: 735 KKKAAVMEKERQNFVYGNPEEGVKGCIANGIDEKTANIIYDEMIDFAKYAFNKSHAAAYA 794 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+SYQTA++K +YPVEF+AA MT DNV K+ ++ RQ ++IMPP +N F V Sbjct: 795 VVSYQTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSV 854 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y L+A+K +G T I++ PF SL DF R+ +K++N+R +ES + +G Sbjct: 855 SNGAIRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSG 914 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947 ALD +R Q + + +KN ++F E+ +IT Sbjct: 915 ALDSLPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYT 974 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAA 999 E+ +LG Y SGHPL+ Y + +K + G+ + + Sbjct: 975 KEELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGG 1034 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K K TR+ + ++T + A E FP Sbjct: 1035 MITEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1068 >gi|295091058|emb|CBK77165.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium cf. saccharolyticum K10] Length = 1159 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 379/1047 (36%), Positives = 576/1047 (55%), Gaps = 41/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+ + + ++ + ++AITD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + + ++LL EGYQ L+++VS + ++ Sbjct: 62 VLGCEIYVAPGSRFDR--EIGAGEDKYYHLILLAENNEGYQNLMKIVSTGF-VEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+ GLI L+ +G + R + +K L ++ +FG+ ++ LQ Sbjct: 119 RVDFETLERYSR-GLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++++ +PLVATN+ ++ ED ++HD+L+ + V+ ++R R Sbjct: 178 HGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK+ EM SIF EALENT +IA RC+ ++ +P+F K Sbjct: 238 YEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVPGG----KT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L G R R+RLD+EL+VI M + YFLIV DFI + Sbjct: 294 SWEYLNELCEEGFRTRYPDDDGTL-------RKRLDYELSVIQSMGYVDYFLIVWDFIHF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 407 RQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDLGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + REA +DP + L+++S++LEGL RH S HAAG+VI + + VP+ Sbjct: 467 LDKAL--KTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYVPLS 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R TQF M +E+ GL+K DFLGL+TLT++Q ++ + +K+DL+ I ++D Sbjct: 525 RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKIDYND 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 L T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y K Sbjct: 584 KAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYLKGK 643 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 644 NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 703 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 704 EKERQNFVYGNPEEGVKGCIANGIDEKTANTIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 763 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT DNV K+ ++ RQ ++IMPP +N F V + I Y Sbjct: 764 YLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGAIRY 823 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+A+K +G T I++ PF SL DF R+ +K++N+R +ES + +GALD Sbjct: 824 GLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDSLPG 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + + +KN ++F E+ +IT Sbjct: 884 TRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYTKEELLAF 943 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006 E+ +LG Y SGHPL+ Y + +K + G+ + + M+ K Sbjct: 944 EKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMITEKTV 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR+ + ++T + A E FP Sbjct: 1004 KTTRQNKMMAFITVEDLAGTVEVLIFP 1030 >gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234] gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] Length = 1165 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 645/1037 (62%), Positives = 799/1037 (77%), Gaps = 8/1037 (0%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 ++ P FVHL+VHS++SLLEGAL L I+ K AD+QPAI I DTNNLF+ALEFSQK Sbjct: 12 AGAMD--PQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLFAALEFSQK 69 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G+QPIIGCQL IDM+D + + +PSIVL+ +T GY RL++LVSR Y Sbjct: 70 AADDGLQPIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRLVDLVSRAY 129 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +G Q+VR+ SWL GTEGLI LTG SGP+D A + +AE RL T +LFGD Sbjct: 130 LEGEGHQAVRVTRSWLAAGGTEGLIALTGAGSGPVDLALKAGLAALAEARLKTLVELFGD 189 Query: 181 RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 RLYV LQRH YDR +E+++V LAY H++PLVATN + F S DY+AHD LMAVAH+ VV Sbjct: 190 RLYVELQRHGSYDRRQENRLVDLAYRHDIPLVATNEAFFPSPADYDAHDALMAVAHNAVV 249 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 S R R+T DHYLK+R EM ++F+DLPEALENTVEIARRCSF+L+ PILPRF Sbjct: 250 SDDRRFRLTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPILPRFTGASD 309 Query: 301 DDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D ++ E E ELR +A GLE RL++ +A GY +DYR+RL FEL VI RMKF GYFL Sbjct: 310 DPVEAERAESAELRRQAEEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIERMKFPGYFL 369 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDF Sbjct: 370 IVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDF 429 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL Sbjct: 430 DIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 489 Query: 479 IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +PN+PA+P +AI ++ R +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDR Sbjct: 490 VPNNPANPTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDR 549 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PLSQLVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VD Sbjct: 550 PLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIAVD 609 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ IP DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++N Sbjct: 610 LASIPLDDPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN 669 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I VYN RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAM Sbjct: 670 IPVYNARKHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAM 729 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKIKEEMDKQ+ RF+ GA NG+ K A IF+LLAKFA+YGFNKSHAAAYA++SYQTA Sbjct: 730 GKKIKEEMDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTA 789 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 +MK HYPVEFLAASMTL+M N EKI F QDA + IQ++ PSV T F+ GDNRIYY Sbjct: 790 YMKAHYPVEFLAASMTLDMSNTEKINDFRQDAIRLGIQVIAPSVQTSFRLFETGDNRIYY 849 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 SLAAIKGVG + HI+ D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY Sbjct: 850 SLAAIKGVGESAVEHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYD 909 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R +L+ LD I +AQ ++N+ + ++F T +KI L ++ +S + E + Sbjct: 910 RAELIGGLDRILGFAQRAQENKLSGQSDMFGAGAATGPEKIALPVYTPWLASEKLHREFQ 969 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015 VLGFY S HPLD Y +L KM ++ + + A +G + RLA V SKQ++KTR G+++ Sbjct: 970 VLGFYLSAHPLDTYNKLLAKMRVQTFADFSAAVKKGASAGRLAGTVTSKQERKTRTGNKM 1029 Query: 1016 GWVTFSEPAKEYEANFF 1032 G V FS+ + ++EA F Sbjct: 1030 GIVAFSDASGQFEAVLF 1046 >gi|260439212|ref|ZP_05793028.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] gi|292808227|gb|EFF67432.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876] Length = 1155 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 390/1047 (37%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I + ++AITD ++ ++F + A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSGKIEEITARAKELGMDSLAITDHGVMYGVIDFYRAARNVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + ++LL GY L+++VS+ + +D Sbjct: 62 ILGCEVYVAPGSRFEKEP--GISDDRYYHLILLAENNTGYANLMKIVSKGF-VDGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E +EG+I L+ +G + + N + A K L ++ +FG ++ LQ Sbjct: 119 RVDYEVLEEY-SEGIICLSACLAGEVQKLLARNLYEEACKAALKYEAIFGKGNYFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +V+++ + LVATN+ + E+D EAHD+L+ + V+ +DR R Sbjct: 178 HGIPTQKLVNRLLVRMSRELNIELVATNDVHYTYEDDAEAHDILLCIQTGKKVNDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK+ EM +FS P+AL+NT +IA+RC+ ++ LP++ E Sbjct: 238 YEGGQYYLKSEEEMRELFSYAPQALDNTHKIAKRCNVEIEFGVTKLPKYDVPEGF----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ L + + GL G A + +RLD+EL+VI +M + YFLIV DFI + Sbjct: 294 SESYLEHLCMEGLVK-------RYGERAAELEERLDYELSVIKKMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N I VGPGRGS AGS+ AY L ITDIDP++++L+FERFLNP+R+SMPD DIDFC +R Sbjct: 347 AKSNGIAVGPGRGSAAGSIVAYCLEITDIDPIKYNLIFERFLNPERVSMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L AK ++DVGR L MPYS D L K+IPN+ Sbjct: 407 RPEVIDYVMKKYGKDRVVQIVTFGTLAAKGVIKDVGRVLDMPYSVTDSLSKMIPNEIGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ ++ FR +P V L++I ++LEGL RH S HAAG+VIG RPL + VP+ Sbjct: 467 LD-KALNANNEFRTRYETEPEVKYLIDICKRLEGLPRHTSMHAAGVVIGSRPLDEFVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++Q + + +R V D+S I ++D Sbjct: 526 RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAERLINKRGDVSFDISKIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ++ T G+FQLES+GM+ ++ ++PD IED+IA +SLYRPGP+D I Y K Sbjct: 585 RNVLEMIGQGKTEGVFQLESTGMKNFMKELKPDGIEDLIAGISLYRPGPMDFIPQYIAGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K I ++P+LKET G I+YQEQVMQI + L+GY+L +D++RRAM KK + M Sbjct: 645 NDKTSITYACKELEPILKETYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKQAVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K++ FI G GI +++A +I++ + FA Y FNKSHAA YA ++++TA Sbjct: 705 EKERHNFIYGNEEENVAGCIAKGIDESVASHIYDTMMDFAKYAFNKSHAACYAFVAFRTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836 ++K +YPVEF+AA MT +DN K+ ++ R I+I+PP +N F D+ I Sbjct: 765 YLKYYYPVEFMAALMTSVLDNTTKVAQYIVTCRNMGIEILPPDINEGEGTFTAASDSSIR 824 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+AIK +G I+E A+ F ++DF SR+ K++N+R +ES + +GA D FG Sbjct: 825 YGLSAIKSLGRPVIEAIVEERANGGRFKDIKDFISRLSGKEVNKRTVESFIKSGAFDSFG 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFEN 954 +R Q++ +I K + ++F D+IT+ S Sbjct: 885 LTRKQMMLVYGDIMDKVSSERKTEISGQMSLFDMFAPDEKPDEITIPDVGEYTKSELLAM 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPLD Y+ +L K + + + + M+ Sbjct: 945 EKEVLGIYASGHPLDEYEGLLNKNVTCTTADFIPDDETGMPKVNDDERVIVGGMIAECSV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR+G + ++ + E FP Sbjct: 1005 KNTRQGQNMAFLKLEDRVGTVEVIVFP 1031 >gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583] gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583] Length = 1161 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 593/1029 (57%), Positives = 758/1029 (73%), Gaps = 7/1029 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGA+ + I+ +D PAIAITDTNNLF ALEFSQ A GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGAIKIPQIVQHAVSDNAPAIAITDTNNLFGALEFSQYCFAEGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQ+ ID D + K +P PS+VL ++ GY L+ LVSR YL + Sbjct: 76 PIIGCQIAIDFGDKDDHSRLAKYHYPSDFPSVVLFAASKTGYACLVRLVSRAYLDEHNTN 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL +EG+I LTGGS GPI+ A + + A +RL+ K++FGDRLY+ LQ Sbjct: 136 FPHIKADWLLS-QSEGIIALTGGSGGPINLALAEDKKEWAIERLMDLKRIFGDRLYIELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E++++ LAY H++PLVATN + FL+++ YEAHD LMAVA VVS +R R Sbjct: 195 RHGSYDRKVEAELIDLAYVHQIPLVATNEAFFLNKKGYEAHDALMAVAEGQVVSNPNRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306 VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + +PILPRF E+ D + E Sbjct: 255 VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHAFTPMRSPILPRFTERSVDSNAALE 314 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ EL N+A GL++RL +A+GY DY QRLD+E+ VI RM+FSGYFLIV+DFI+W Sbjct: 315 EDKELINQAKDGLKIRLETIGLAEGYTLADYEQRLDYEIAVITRMQFSGYFLIVSDFIKW 374 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 375 AKLHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQDR 434 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+ P + Sbjct: 435 REEVIHYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVSATPGNN 494 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + QAI D+ +F E +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 495 IELAQAIKDEPKFAEEAKKEPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPM 554 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++GVK+DLS I +D Sbjct: 555 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGVKIDLSCISLND 614 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L T+G+FQ+ES GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 615 EETYAMLARGNTVGVFQVESPGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARK 674 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+EKI SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI +EM Sbjct: 675 HGQEKITSIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIHKEM 734 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 KQ+ RF+SGA GI K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV Sbjct: 735 QKQRTRFVSGAVDRGIDKDQADMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHYPV 794 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMT +M N +K+ F ++A + IQ++ P V T F++G+N IYYSL+AIKGV Sbjct: 795 EFLAASMTYDMMNADKLNDFRREALRLEIQVIAPCVQTSHRIFEIGENCIYYSLSAIKGV 854 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + HI+ +KPF LEDFC R+D + +N+R +ESL++AGA DCFG +R LL SL Sbjct: 855 GDSVVDHIVACRGNKPFKDLEDFCGRIDPRVINKRAMESLIYAGAFDCFGIAREVLLASL 914 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A + N ++ +IF G I L + + + + + +E +V+GFYFS Sbjct: 915 ETLNARAIRIFDNNSSGQTDIFGMVDGPKEPFI-LSQATPWSLAEKLHHEFQVIGFYFSA 973 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y+ IL K ++ + ++G RLA VV+KQ +KT+ G +IG + FS+ Sbjct: 974 HPLDEYQTILAKKRVQTWNNFSNAVKGGATAARLAGTVVTKQIRKTKSGKKIGIIQFSDT 1033 Query: 1024 AKEYEANFF 1032 + +YE F Sbjct: 1034 SGQYETVMF 1042 >gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] Length = 1165 Score = 814 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 642/1031 (62%), Positives = 809/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K A D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G +PSIVLL +T GY+RL++LVSR YL Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A + AE RLL K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EM +F+DLPEALENT+EIARRCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E ELR +AV GL+ RL+ ++ GY +DYR+RL+FEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEAGELRRQAVEGLDRRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E D PF +EDFC R+D +++NRRVLESL++AGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ +N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|222529253|ref|YP_002573135.1| DNA polymerase III DnaE [Caldicellulosiruptor bescii DSM 6725] gi|222456100|gb|ACM60362.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1139 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 388/1033 (37%), Positives = 601/1033 (58%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+ ITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL +GY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GLI LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L ED HD+L+ + +S +R Sbjct: 177 YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + R + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + ++ + +V R+++ ++ LEG+ RHAS HAAG+VI P++ LVP+ Sbjct: 467 DKA-LEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NGI K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+A+ +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ F L DF RVD+ +N+R++E+L+ +GA D G +R LL S+ Sbjct: 824 ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I A K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--AIKQTKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + K I E A + I + ++ + K T+ + + Sbjct: 941 HPLEKYTEEISKYNITPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNLTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEVLFFP 1013 >gi|158521896|ref|YP_001529766.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] gi|158510722|gb|ABW67689.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] Length = 1182 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 380/1035 (36%), Positives = 583/1035 (56%), Gaps = 23/1035 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH++YSLL+G + + ++ + A+AITD +F + F ++A AGI+ Sbjct: 8 PDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAGIK 67 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IGC+ + + T + +VLL T EGY+ L L S L Sbjct: 68 PVIGCECYVAPRSITDRTPMDH---DGLSHLVLLAETMEGYRNLCHLASIASLK-GFYHK 123 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187 RI L++ G GLI L+ G + + +++ A++ +++ G+ ++ +Q Sbjct: 124 PRIDKELLKQYGN-GLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQ 182 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ R + + +++ +PLV TN+ +L ED+ HD+ + + + DR Sbjct: 183 NNGIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRF 242 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T K + EM + P A NTV IA RC+ L P F K Sbjct: 243 RFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPG----K 298 Query: 306 EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + G RL A + + Y +RL+FEL+VI M F YFLIVADFI Sbjct: 299 TVDQLFEETVREGFARRLKAVARKNPDFDREAYDRRLEFELSVITDMGFPSYFLIVADFI 358 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 AK+N IP+GPGRGS AGS+ +YA+ ITD+DP+ LLFERFLNP+R SMPD D+D C Sbjct: 359 AHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDICI 418 Query: 425 DRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R+ V Y+ KY G + VAQIITFGS++++A +RDVGR + +P S VDR+ KLI P Sbjct: 419 IGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLI---P 475 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+A++ ++ + P L+ + LEG+ RHASTHAAG+VIGD+PL++ + Sbjct: 476 MNKSLDEALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYL 535 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+Y V+ + +TQ++MK +E GL+K D LGL+ LT++ +L L Q+ D+S + Sbjct: 536 PLY-AVKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGRQVPDMSHLD 594 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 D +TY LL T G+FQLES+GM++ L ++P DI ALV+LYRPGP+ + + Sbjct: 595 LADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSGMLVD 654 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + ++G++++ + P ++P+LKET GVI+YQEQVMQIAQ ++GY++ AD LR+AMGKK Sbjct: 655 FVECRHGRKRVEYLIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTADDLRKAMGKK 714 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I +M + + FI GA GI K A ++E + F +YGFNKSH+AAYA++++QTA++K Sbjct: 715 IAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYALVAFQTAYLK 774 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 H+PVE +AA +T + + KF + R +I+++PP +N V F V +R+ + L Sbjct: 775 AHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVVGDRLRFGLL 834 Query: 841 AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG I+ E A+ F S+ D C RV K+N++VLESLV GALD G R Sbjct: 835 AVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGALDSTGAGRA 894 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRV 958 Q+ L++ + Q V++ + + ++F + + TL + R E+ V Sbjct: 895 QMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDRQRLAFEKEV 954 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LGFY SGHPL Y+ +LRK +N+ + + +K T++G ++ V Sbjct: 955 LGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNRKTTKRGDQMAIV 1014 Query: 1019 TFSEPAKEYEANFFP 1033 T + E FP Sbjct: 1015 TIEDMYGTVEVVVFP 1029 >gi|114567554|ref|YP_754708.1| DNA polymerase III DnaE [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338489|gb|ABI69337.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1130 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 400/1030 (38%), Positives = 618/1030 (60%), Gaps = 25/1030 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA + +++++ + PA+AITD L+ ++F ++A GI+P Sbjct: 4 SFVHLHNHSEYSLLDGACRIKDLVNRAVELEMPAVAITDHGVLYGVIDFYREARKRGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC+L + + L + + + LL GY+ L++LVSR +L + Sbjct: 64 LIGCELYVAPRSRLDKEAR---IDDNLYHLTLLCKNELGYRNLVQLVSRAFL-EGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EGLI L+G G I R + A ++ L +++LFG Y+ LQ Sbjct: 120 RVDQELLEKYH-EGLIALSGCVVGEIPRLLQNGDYRGAREKALYYQELFGSGNFYLELQD 178 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++L+ +PL A+N+ +L ++D + HDVL+ + +VV+ + R R Sbjct: 179 HGLQEEKASLPGLLRLSREDSIPLAASNDCHYLRKKDAQVHDVLLCIQTGSVVNDEKRLR 238 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + R EM ++F D PEALENT++IA C+ LP F Sbjct: 239 FSGSEFYMKSREEMAALFPDYPEALENTLKIAGECNLDFTFGEYHLPVFELPPG----HS 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ L + + +RL++EL VI M F+ YFLIV D + W Sbjct: 295 AESFLSEMVHEKFRRKYPD-------AQEKIIERLEYELRVINEMGFAAYFLIVQDLVNW 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++N IPVGPGRGS AGS+ +Y L IT IDPLR+ LLFERFLNP+R+SMPD DIDFC ++ Sbjct: 348 SRQNGIPVGPGRGSAAGSLVSYVLDITTIDPLRYDLLFERFLNPERVSMPDIDIDFCFEK 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI Y+ +KYG +RVAQIITFG++ A+AA+RDVGRAL +PY QVDR+ K++P + Sbjct: 408 RDRVIDYIISKYGADRVAQIITFGTMAARAAIRDVGRALDVPYGQVDRIAKMVPAELGVS 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + A +D + +L+I+Q +EG+ RHAS HAAG+VIG + LS+++P+ Sbjct: 468 LERA-LEISPDLFTAYQSDYNTRNILDIAQAIEGMPRHASIHAAGVVIGRQSLSEILPLQ 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 + +TQF + +E GL+K D LGL+TLT++ ++L+ + + R +D+S IP DD Sbjct: 527 KTP-EGHVLTQFTKETVEDIGLLKMDILGLRTLTVIDRALEIIRKTRDEDIDISSIPLDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 Y LL+ T G+FQLES G+R+ L M+PD EDIIA+++LYRPGP+ + + + N Sbjct: 586 EAVYKLLSAGDTAGVFQLESDGLRRLLCEMKPDRFEDIIAVIALYRPGPLGSGMVEDFIN 645 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RKNG+++I I PL++ +LKET GVI+YQEQVM++A L+ +++ EADVLRRAMGKK E Sbjct: 646 RKNGRQEIEYIDPLLEDILKETYGVILYQEQVMRVASELADFTMGEADVLRRAMGKKKAE 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 E+ Q+++FI+GA++NGI A ++F+L+ FA YGFNKSH+AAYA+ISYQTA++K HY Sbjct: 706 ELMAQRDKFIAGAARNGIGLATASHLFDLMESFAGYGFNKSHSAAYALISYQTAYLKAHY 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVE+L A ++ +DN +K+ + ++ R+ I+++PP +N +F V + I + L AIK Sbjct: 766 PVEYLCAFLSSVIDNQDKVVSYIKECRRLGIKVLPPDINESYENFSVARDAIRFGLGAIK 825 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++I+EA + SL DFC RVD +LN+R+LE+L+ AG D G+SR L Sbjct: 826 NVGQNAVKNIVEARKQGFYTSLFDFCRRVDLGQLNKRMLENLILAGCFDSLGFSRKGALS 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ + +++N ++ ++F E + I ++ S R E+ VLGF+ Sbjct: 886 IMEECVNISLAIKQNECSQQGSLFGDEMEMVEEPI-IKLKGEYESRERLLKEKEVLGFFV 944 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 S PLD ++ +L + E+ + +R+A +VV+ ++ +RKG + Sbjct: 945 SESPLDEFRSLLPLISTHCLEDINLWEEESYVRVAGIVVNLSRRVSRKGESYARFVLEDL 1004 Query: 1024 AKEYEANFFP 1033 E FP Sbjct: 1005 GGRIEVLVFP 1014 >gi|304436411|ref|ZP_07396386.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370575|gb|EFM24225.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1142 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 380/1034 (36%), Positives = 600/1034 (58%), Gaps = 30/1034 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+GA + +++ + A+A+TD ++ A+ F ++A A GI P Sbjct: 14 AFAHLHVHTEYSLLDGASRIKDLVRRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 73 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + T ++LL GY+ L++L+S + + Sbjct: 74 IIGCEVYLAPRQRQERAEVNGTR---YYHLILLAENECGYRNLVQLISLANI-EGYYYKP 129 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L +GLI L+ +G I +A ++A++ + ++ +FG D ++ +Q Sbjct: 130 RIDKELLHRFH-DGLIALSACVAGEIPQAILRGDMELADQLVREYRDIFGKDNFFLEVQN 188 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + LA +++ L ATN+ ++ ED E HD+L+ V ++ DR R Sbjct: 189 HGLPEEMTVNRALRDLAKKYDIGLTATNDVHYVHAEDSEFHDILLCVQTGRTLNDPDRMR 248 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD+YLK+ EM +F+D P A+ENT +IA RC LP + D Sbjct: 249 FSGPDYYLKSEEEMSDLFTDYPGAIENTAKIAARCQVDFTFGELQLPYYPLP---DGYTT 305 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR + L R + RQRLD+EL VI +M ++ YFLIV DFI + Sbjct: 306 DDAYLRALCIERLPARYP-------TARDEVRQRLDYELGVIHKMGYASYFLIVWDFINY 358 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF Sbjct: 359 ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDDIN 418 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V + KL+P + Sbjct: 419 RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELNIT 478 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + FR+ D R++++++K+EGL R+ S HAAG+VI PL++ VP++ Sbjct: 479 LD-RALEESADFRKRYEEDEKTHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTRQVPVW 537 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 V VT+++ +E GL+K DFLGL+TLT++ ++ + Q G+++D+ IP D Sbjct: 538 --VSDGTLVTEYDKDDVEALGLLKMDFLGLRTLTIIDDAVKNIRQSHGIELDVDKIPLVD 595 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + + + Sbjct: 596 EKTSRMLCAGDTGAVFQMESTGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 655 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 656 GLHGKKEVVYLHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 715 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + QKE F+ G KNGI +A +IF+LL FADYGFNKSH+AAY ++++QTA++K HY Sbjct: 716 LLMAQKEIFLQGCEKNGIEAALANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 775 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+A +T MD +KI + Q Q NI+I+PP +N F + I + LAA++ Sbjct: 776 PVEFMAGVLTSIMDKTDKIPVYIQLCHQMNIKILPPDINASTAGFSIESGAIRFGLAAVR 835 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG T + + A+ F SL DFC+R+D + LN+R +ESL+ GA D G R QLL Sbjct: 836 NVGETAIESMEQVRSANGSFRSLIDFCARIDVRILNKRAIESLIKCGAFDSLGTERNQLL 895 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGF 961 SLD+ + A +++R + +F + ++ + R E+ GF Sbjct: 896 SSLDSAMQDAARTQRDRISGQMGLFGQDTMESIHQVQNAVEVPPSTPRERLMWEKEATGF 955 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y +GHPLD Y+ L + + + +R+ ++ + ++ T+KG + + Sbjct: 956 YITGHPLDDYRDTLS--CLLPISDILTGLCKDRQLVRIGGILTNTKRYTTKKGDTMLFAE 1013 Query: 1020 FSEPAKEYEANFFP 1033 + + E FP Sbjct: 1014 MEDYSGHIELTVFP 1027 >gi|255281425|ref|ZP_05345980.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM 14469] gi|255267913|gb|EET61118.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM 14469] Length = 1150 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 373/1046 (35%), Positives = 580/1046 (55%), Gaps = 39/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A A GI+PI Sbjct: 3 FTHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGAMYGVIDFYRAARAEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + N G +VLL GY LI++VS + ++ R Sbjct: 63 LGCEVYVAPNSRFDRENTGGE--DRYYHLVLLAENNTGYANLIKIVSAGF-VEGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ EG+I L+ +G I R + +K L ++++FG ++ LQ H Sbjct: 120 VDKELLRQYH-EGIIALSACLAGEIPRYLVRGLYEEGKKVALEYQEIFGKGNFFLELQDH 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++++ + LVATN+ + D E HD+L+ + + +DR R Sbjct: 179 GIANQQIVNQQLLRMSAETGIELVATNDVHYTLASDAEPHDILLCIQTGKKLQDEDRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F +ALENT +IA RC+ ++ LPRF E Sbjct: 239 EGGQYYVKSPEEMAQLFPYALQALENTQKIADRCNVEIEFGVTKLPRFDVPEG----YTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GL +R A++ ++RL++EL +I +M + YFLIV DFI++A Sbjct: 295 WEYLNKLCFDGLALRYPP------EQAEELKERLNYELGIIQKMGYVDYFLIVWDFIRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 349 RDHDISVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDIDFCFERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PYS VD + K++P + + Sbjct: 409 QEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDIPYSVVDSVAKMVPQELNITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ ++S R+ DP + RL++++++LEGL RH S HAAG+VI + + VP+ R Sbjct: 469 D-KALQENSELRKIYEEDPQMHRLIDMAKRLEGLPRHTSMHAAGVVICQKAADEYVPLSR 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 TQF M +E+ GL+K DFLGL+TLT++Q ++ GV +D+ I +DD Sbjct: 528 GS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLVQKDTGVLLDMDKIDYDDK 586 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 587 AVLNSLGTGKTDGVFQLESAGMQNFMKELKPQSLEDLIAGISLYRPGPMDFIPQYIRGKN 646 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E I P + P+L+ T G I+YQEQVMQI + L GY+L +D+LRRAM KK M+ Sbjct: 647 HPETITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKASVME 706 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K++ F+ G KNGIS+ +A I++ + FA Y FNKSHAAAYAV+SYQTAW Sbjct: 707 KERRNFVYGNEEEGVPGCIKNGISEQVANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAW 766 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YP+EF+A+ MT +DN K+ + R+ I+I+PP VN F V + +I Y Sbjct: 767 LKYYYPLEFMASLMTSVIDNPPKVAAYHMTCRKMGIEILPPDVNCGEGGFSVENGKIRYG 826 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK +G ++E + + SL++ R+ K +N+R LES + +GALD G + Sbjct: 827 LSAIKSIGRPVIAALVEEREKNGRYTSLKNLVERMSGKDINKRTLESFIKSGALDSLGAT 886 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R Q++ + K ++F E+ +I++ E Sbjct: 887 RRQMMTVYSQVCDAVNQERKTSLAGQMSLFDFVGEEEKKHYEISMPDVGEYEKEQLLAYE 946 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007 + VLGFY SGHPL+ Y+ + RK + + + + M+ +K K Sbjct: 947 KEVLGFYVSGHPLEAYEELWRKRITNVTTDFQPDEETGIPLVQDQSRVTVGGMITAKTIK 1006 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + ++T + E FP Sbjct: 1007 YTKTNKTMAFLTLEDLLGTVEVVVFP 1032 >gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8] gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8] Length = 1162 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 412/1051 (39%), Positives = 617/1051 (58%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FVHL+VHS YS+++G + + ++ ++A PA+ +T+ +N+ S + F + A Sbjct: 1 MTMANTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + ++ D + + LL +GY L E++S Y Q Sbjct: 61 AGVKPIIGADIWLENPDEPE----------NPFRLTLLARDNDGYLNLTEVISLGYTEGQ 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + SWL E +GLI+L+G G + +A ++A +R ++ L+ D Y+ Sbjct: 111 RYGKPIVQKSWL-ESRAKGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYL 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR D V+LA LP+VATN+ FL +D+EAH+ + + S + Sbjct: 170 ELQRTGRAGDEDCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDP 229 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YL++ EM+ +FSD+PEA+ENTVEIARRCS +++ LP + + Sbjct: 230 RRDRRFSDQQYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGM- 288 Query: 303 IQKEEENELRNKAVAGLE----VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + R+ + GLE L++ ++Y +RL FEL++I +M F GYFL Sbjct: 289 ---TMDEYFRHVSEEGLEARLAKTLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFL 345 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 346 IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDF 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + RD VI Y KYG E V+QIITFG++ AKA +RDV R Y D+L KL Sbjct: 406 DVDFCMEGRDRVIDYTAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +AI + + +E D + E++ KLEG+ R+A HA G+VI Sbjct: 466 IPFEVGMTL-NKAIEQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTK 524 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 ++ P+Y D VTQF+ +E AGL+KFDFLGL+TLT+++ +L+ + R + Sbjct: 525 ITDFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGE 584 Query: 597 ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D+S IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPG Sbjct: 585 GELDISAIPLDDKPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 644 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + + + +RK+G++ + HP + P+L+ T GVI+YQEQVMQIAQ+++GY+ Sbjct: 645 PLQSGMVDDFIDRKHGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYT 704 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQK F+ G NGI KT+A NIF+L+ KFA YGFNKSH+ Sbjct: 705 LGGADMLRRAMGKKKPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHS 764 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA +T +M N +K+ ++ R + ++ P V+ Sbjct: 765 AAYALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSAY 824 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D +I Y L AIKG+G I+EA+ PF + DFC RVD KK+N+R +E+L Sbjct: 825 TFTVNDQGQIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEAL 884 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFS 944 + +GA+D G R +L+ S+D + A +N ++F +G D+ T + Sbjct: 885 IRSGAMDKLGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVA 944 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 R + E+ LG Y +GHP D Y+ +R+ + + R+A +V Sbjct: 945 HVREWPEKERLKGEKDTLGLYLTGHPFDEYEREVRRFVRCSIADLK--PNKSPQRVAGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+++ KT+ GS + ++T + + EA F Sbjct: 1003 VAQRTMKTKTGSTMCFITLDDRSARIEATLF 1033 >gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 1165 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 641/1031 (62%), Positives = 811/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G +PSIVLL +T GY+RL++LVSR YL + Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDLVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI L+G +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPTQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E +ELR +AV GL++RL+ ++ GY +DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ G+K+DL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGIKIDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCF R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAQLAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD + YAQ ++N+ + +IF + +KI+L FS S R E +VLGFY Sbjct: 916 GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|303241705|ref|ZP_07328202.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302590706|gb|EFL60457.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1169 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 380/1067 (35%), Positives = 605/1067 (56%), Gaps = 63/1067 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ + +IAITD ++ ++F ++A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGANRIKDLIKRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +VLL GY+ L+++VS + + R Sbjct: 64 LGCEVYTAKRTRHDKQGVLDSDPG---HLVLLAKDNRGYKNLMKIVSIGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L+ +EGLI L+ SG + +A N + A+K + +FG Y+ LQ + Sbjct: 120 IDFEVLERY-SEGLIALSACLSGDVPKALMNNDFERAKKVSQRYNDIFGKGNFYLELQSN 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ SQ+V+L+ +PLVATN++ +L +ED AH+VL+ + ++ +DR R Sbjct: 179 GIEEQKLVNSQLVKLSKETGIPLVATNDAHYLRKEDARAHEVLLCIQTGKNMNDEDRMRF 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + D Y+K+ EM +F ++PEA++NTV+I C+ L+ LP+F + K+ Sbjct: 239 STEDFYVKSPEEMADVFVNVPEAIQNTVKIGEMCNVELEFGKLHLPKFSIPD----NKDA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL + +D +RL++EL+VI +M + YFLIV DFI++A Sbjct: 295 FKYLKELCYEGLNRLFGECI-------EDKLERLEYELSVIKQMGYVDYFLIVGDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N IPVGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R++MPD DIDFC +RR Sbjct: 348 KDNGIPVGPGRGSAAGSLVAYCLGITNIDPLKYNLLFERFLNPERVTMPDIDIDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG ++V+QIITFG++ A+AA+RDVGRAL + YS+VD + K+IP + Sbjct: 408 QEVIDYVVRKYGEDKVSQIITFGTMAARAAIRDVGRALDIAYSEVDIVAKMIPMQIGMNI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D + +++ ++ LEG+ RHASTHAAG+VI P+++ VP+ + Sbjct: 468 -GKALEMNPELKAKYEQDNLIKDMIDTARLLEGMPRHASTHAAGVVISKDPITEYVPLQK 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 + + TQF M +E+ GL+K DFLGL+TLT+++ ++D + + D+ + +D Sbjct: 527 N--DESVTTQFPMGQLEELGLLKMDFLGLRTLTVIRDAVDLVYENYNTKLDIDRLEMNDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + ++ T G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y KN Sbjct: 585 NVFKIIGEGKTSGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIKNKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + HPL++ +L T G ++YQEQVMQI + L GYS+ +D++RRAM KK M+ Sbjct: 645 VPAGVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLGGYSMGRSDLVRRAMSKKKISVME 704 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI G +NG+ + IA IF+ + FA Y FNKSHAAAYAV++Y Sbjct: 705 QERKNFIHGIDDENGNIVVMGCVRNGVDEKIANKIFDEMMDFASYAFNKSHAAAYAVVAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YPVEF+AA + + + +KI ++ + + NI+++PP +N + F V + + Sbjct: 765 QTAWLKCYYPVEFMAALLNSFLGSSDKISQYVHECKVLNIEVLPPDINESQMKFTVVNGK 824 Query: 835 IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAA+K VG + ++ E D + S DFC R+D K +N+R +ESL+ +GA D Sbjct: 825 IRFGLAAVKNVGEGAVKSVIDERRTDGNYRSFRDFCDRIDGKDVNKRCIESLIKSGAFDS 884 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----------SDKITLEK 942 G R +L+ + + ++K ++F GT D+ Sbjct: 885 MGVYRSRLIAVFEKMLDGIAQIKKRNMEGQLSLFELSMGTDDKVNSSETSFYEDEDIYPD 944 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----------------GYEES 986 + + V E+ +LG Y SGHPL ++ L KM +++ Sbjct: 945 INEYPNKVLLSMEKEMLGLYISGHPLSEFEEELNKMVSLFSSELNVDANQSEEAYSLDDA 1004 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G N+ + ++ SK+ K TR + + ++T + E FP Sbjct: 1005 KNISDGMNVIVGGIITSKKTKTTRNNNLMAFLTLEDLYGMMEVIVFP 1051 >gi|78044608|ref|YP_359983.1| DNA polymerase III DnaE [Carboxydothermus hydrogenoformans Z-2901] gi|77996723|gb|ABB15622.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 1116 Score = 812 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 399/1030 (38%), Positives = 592/1030 (57%), Gaps = 36/1030 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA + +++ + + PA+A+TD NLF +EF ++A A GI+P Sbjct: 2 SFVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G ++ + + T + + +VLL GYQ L+ LVSR Y + Sbjct: 62 ILGVEVYVAPRTRFDKTPK---IDDQLTHLVLLAKDRTGYQNLLRLVSRSYT-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L E ++GLI L+ +G I + A + ++ +FG + Y+ LQ Sbjct: 118 RVDKQLLAE-NSQGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLELQY 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++ L+ +PLVATN+ ++ +E + HDVL+A+ ++ R + Sbjct: 177 HGISEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGRMK 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK EM IF +LP+AL+NT+ IA +C+ + +LP F E K Sbjct: 237 FPTEEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEG----KT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ GL R ++ + RL EL +I +M FSGYFLIV DFI++ Sbjct: 293 PAQYLKELCFQGLYKRYPNPG-------EEVKTRLLHELKIIEQMGFSGYFLIVWDFIRY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++ I VGPGRGS AGS+ AY L ITDIDPL++ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 346 AREKGIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCFER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI Y+ KYG +RVAQIITFG++ AKAA+RDVGRAL PYS+VD++ KLIPN Sbjct: 406 RQEVIDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPNVLGIT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + I + +P V LL++++++EG+ RHAS HAAG+VI + + +P++ Sbjct: 466 LEEA-IETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHIPLF 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605 + + TQF +E+ GL+K D LGL+TLT+++K+L Q G +++L IP DD Sbjct: 525 KTS-EGVVTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEINLKDIPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +TY LL T+G+FQLES GMRQ L+ ++P IED+IALV+LYRPGP+ + + + N Sbjct: 584 EKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVEDFIN 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R++G+ + HP ++P+L+ET GVI+YQEQVM IA +L+G+SL EAD+LRRAMGKK E Sbjct: 644 RRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKKKPE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + K FI + G + A IF L+ FA YGFNKSH+AAYA ++Y TAW+K ++ Sbjct: 704 IIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLKANF 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PV FLAA + DN++K+ + +D ++ I+++PP +N VDF + I + LAA+K Sbjct: 764 PVAFLAALLISVKDNLDKVTVYAEDCQRRGIKVLPPDINLSEVDFTISGQEIRFGLAAVK 823 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG A I+E PF DF R+D K +N+RV+ESL+ AGA FG++R LL Sbjct: 824 NVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGFNRKTLLN 883 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +LD+ ++ K + + LE + E+ LG Y Sbjct: 884 NLDDALEF---YSKKSNGVQLTLGDFLPEADRYNLRLE--EEFSKLELLRMEKESLGLYL 938 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 +GHPL + ++K I A++ ++ TR+G + + Sbjct: 939 TGHPLAGLRSFIQKHCNLK-------ENKEKIYYPAILAEIKRTVTRRGEPMAFALLEGL 991 Query: 1024 AKEYEANFFP 1033 + EA FP Sbjct: 992 NQTVEAVIFP 1001 >gi|258405519|ref|YP_003198261.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM 5692] gi|257797746|gb|ACV68683.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM 5692] Length = 1159 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 413/1038 (39%), Positives = 603/1038 (58%), Gaps = 26/1038 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL H+ YSLL+GA+ + ++ + ++AI+D NLF AL+F A G++P Sbjct: 3 DFTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + D T + +VLL GY L+ LVSR +L + Sbjct: 63 IIGCEVYVAPGDR--RTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWL-EGFHYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + EGLI L+ G + + + LF R Y+ LQ + Sbjct: 120 RVDKELLSQW-NEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQAN 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++LA T +LPLVATN+ +LS D EAHD+L+ + + KDR R Sbjct: 179 GIPEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRF 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y + EM F+ P+ALEN IAR C+ L + P + + + Sbjct: 239 DTQELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQG----RTL 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E E GL RLA+ + + Y QRLD EL+VI F YFLIV DFI WA Sbjct: 295 EEEFIRLVREGLRTRLAK--LPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWA 352 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ IPVGPGRGS AGS+ AY L IT++DPLR++LLFERFLN +R SMPD D+DFC +RR Sbjct: 353 KEQGIPVGPGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRR 412 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYV KYG E VAQI TFG+++AKA +RDVGRAL + +++ D++ KL+P+D + Sbjct: 413 EEVIRYVTAKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDDLKMTI 472 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQLVPMY 546 +A+ + D +V +L+++S++LEGL RHASTHAAGIVI D PL +P+Y Sbjct: 473 D-KALEQEPDLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDHLPLY 531 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 + VTQF+MK +EK GLIKFDFLGLKTLT++ +L Q D+ +P +D Sbjct: 532 LG-KKGEVVTQFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTLPLED 590 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T+ LL T G+FQLESSGMR ++ +QP EDIIAL++LYRPGP+++ + + Sbjct: 591 EATFALLCRTETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVTDFIR 650 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + HPL++P+L+ T GVI+YQEQVM+IA ++ YSL + D+LRRAMGKK Sbjct: 651 RKHGEIPVEYPHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGKKDPS 710 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M +Q+ +F++GA +N I + A IF+L+ KFA YGFNKSH+AAYA++SYQTA++K HY Sbjct: 711 VMAEQRTKFVNGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHY 770 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA +T E+ N +K+ R+ I+++PP VN F V + ++ + L+ +K Sbjct: 771 PVEFMAALITSEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGLSGVK 830 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG ++ E + P+ SL DFC RV S+K+ +RVLESL+ +GA+D G SR LL Sbjct: 831 NVGGGAIEALVAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSRASLL 890 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFSVENSSVRFENE 955 +LD + AQ ++++ ++ A S I + + R + E Sbjct: 891 AALDKVVSTAQRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKRLQYE 950 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGF+ SGHPL ++ L++ + ++ +R A +V ++ T+KG R+ Sbjct: 951 KEALGFFLSGHPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKKGGRM 1010 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + + E FP Sbjct: 1011 AFCQIEDLTGTGEMTMFP 1028 >gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1165 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 641/1031 (62%), Positives = 810/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEEGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM D L+ +G +P+IVLL +T GY+RL++LVSR YL + Sbjct: 76 QPIIGCQVSIDMGDGLETEKRGGQQALVKLPAIVLLAATDAGYERLVDLVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q+V I SWL+E GTEGLI LTG +GP+D A AE RLLT K+LFGDRLYV L Sbjct: 136 QAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARLLTLKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E +ELR +AV GL++RLA ++ GY +DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLATLGMSAGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ GVKVDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGVKVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA +NG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVRNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV + F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQSSFRHFETGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF S+EDFC R+D +++NRRVLESL++AGA DCF R +L Sbjct: 856 GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAELAA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD + YAQ ++N+ + +IF + +KI+L FS S R E +VLGFY Sbjct: 916 GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y IL+KM ++ + E A I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|323693196|ref|ZP_08107414.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323502679|gb|EGB18523.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1176 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 379/1047 (36%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+ + + + + ++AITD ++ ++F + A AGI+P Sbjct: 18 AFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEAGIKP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N ++LL GYQ L+++VS+ + ++ Sbjct: 78 IIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGF-VEGFYYKP 134 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+E +EG+I L+ G + R + A K L ++++FG+ ++ LQ Sbjct: 135 RVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFLELQD 193 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++++ +PL ATN+ ++ +ED E+HD+L+ + V+ ++R R Sbjct: 194 HGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADENRMR 253 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM IF +AL+NT +IA RC+ ++ LP+F E Sbjct: 254 YEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG----YT 309 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR G ++RL++EL VI M + YFLIV DFI + Sbjct: 310 SWEYLRKLCFDGFNKHYPDDDGTL-------KERLEYELGVIQSMGYVDYFLIVWDFIHF 362 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 363 AKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 422 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV +KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 423 RQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGDLGMT 482 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R A D V L+++S++LEGL RH S HAAG+VI + + VP+ Sbjct: 483 LD-KALKASPDLRNAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEYVPLS 541 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605 R TQF M +E+ GL+K DFLGL+TLT++Q ++ + K +DL I ++D Sbjct: 542 RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNIDYND 600 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y K Sbjct: 601 KNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRYLKGK 660 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K+ I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 661 NDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGSVM 720 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + A +I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 721 EKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 780 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT DNV K+ ++ RQ ++I+PP +N F V I Y Sbjct: 781 YLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGGSIRY 840 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK +G + I+ E F +LEDF R+ SK++N+R LES + +GA+D Sbjct: 841 GLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMDSLPG 900 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + +KN +F E+ + ++T Sbjct: 901 TRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDELLYF 960 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006 E+ +LG Y SGHP++ Y + K + G + + M+ +K Sbjct: 961 EKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLTAKTV 1020 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + +VT + E FP Sbjct: 1021 KTTRTNKMMAFVTIEDLYGSVEVLVFP 1047 >gi|292670795|ref|ZP_06604221.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC 43541] gi|292647416|gb|EFF65388.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC 43541] Length = 1130 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 382/1034 (36%), Positives = 600/1034 (58%), Gaps = 30/1034 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+GA + ++ + ++A+TD ++ A+ F ++A A GI P Sbjct: 2 AFAHLHVHTEYSLLDGASRIKELVRRTKELGMDSVAMTDHGVMYGAVRFYKEAKAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + + + + ++LL GY+ L++LVS + + Sbjct: 62 VIGCEVYLAPRMRQE---RAEVDGQRYYHLILLAENELGYRNLVQLVSLANI-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L+ EG+I L+ +G I +A + + A++ + + +FG ++ +Q Sbjct: 118 RIDKELLRRYH-EGIIALSACVAGEIPQAILRGNIEQADEIVREYIDIFGHANFFLEIQD 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + LA H + LVATN+ ++ +D E HD+L+ V ++ DR R Sbjct: 177 HGLPEEKTVNHALRDLAEKHGVRLVATNDVHYVHADDSEFHDILLCVQTGRTINDPDRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD+YLK+ EM +F+D P ALENTV+IA RC LP + + + Sbjct: 237 FSGPDYYLKSEQEMAELFADYPGALENTVKIAERCQVDFTFGELQLPYYPMPKGY---ES 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR L +R + RQRLD+EL VI M ++ YFLIV DFI + Sbjct: 294 DDVYLRALCEERLPLRYPD-------ADDEIRQRLDYELGVIHNMGYASYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+++ + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF Sbjct: 347 AREHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDDIN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+S+V + KLIP + Sbjct: 407 RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFSEVSTITKLIPAELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + FR+ D + R++++++K+EGL R+ S HAAG+VI PL+ VP++ Sbjct: 467 LD-RALQESTDFRKRYEEDEAARRVIDLARKIEGLPRNTSIHAAGVVIAKSPLADQVPVW 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 V VT+F+ +E GL+K DFLGL+TLT++ +++ + + GV++D+ IP +D Sbjct: 526 --VSEGTLVTEFDKDDVEALGLLKMDFLGLRTLTIIADTVNHVRRSHGVELDIDQIPLED 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + + + Sbjct: 584 AQTAKMLCNGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 644 GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADILRRAMGKKKHE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + QKE F+ G KNGI ++A IF+LL FADYGFNKSH+AAY ++++QTA++K HY Sbjct: 704 LLMAQKEIFLQGCEKNGIEASLANRIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+A +T MD +KI + Q RQ I+I+PP +N+ F + I + LAA++ Sbjct: 764 PVEFMAGVLTSIMDKTDKIPVYIQLCRQMKIKILPPDINSSVATFGIEGGAIRFGLAAVR 823 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG + A+ F SL DFC+RVD + LN+R +ESL+ GA D G R QLL Sbjct: 824 NVGENAIASMERVRAEGGKFRSLVDFCARVDMRTLNKRAIESLIKCGAFDSIGMERNQLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGF 961 +LD + A +++ + +F + +I + + R E+ GF Sbjct: 884 AALDAAMQDAARRQRDLISGQIGLFGQDTMEEVQQIQISSDVPPSTTRERLTWEKEATGF 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y +GHPLD Y L + + T +R+ ++ + ++ T+KG + + Sbjct: 944 YITGHPLDDYSDTLA--CLLPIGDIPGTIRKDRQLVRIGGILTNTKRFTTKKGDTMLFAE 1001 Query: 1020 FSEPAKEYEANFFP 1033 + E FP Sbjct: 1002 LEDFTGRIEVTIFP 1015 >gi|291519904|emb|CBK75125.1| DNA polymerase III catalytic subunit, DnaE type [Butyrivibrio fibrisolvens 16/4] Length = 1161 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 380/1055 (36%), Positives = 576/1055 (54%), Gaps = 47/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+G+ + + K A AITD N++ ++F ++ AAGI P Sbjct: 2 SFVHLHTHTEYSLLDGSNKIKAYVKKCVDMGMTAAAITDHGNMYGVIDFYKECKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + ++LL +GYQ LI++VS+ Y +D Sbjct: 62 VLGCEVYVAPGSRFDRER--VQGEDHYYHLILLAENNQGYQNLIKIVSKGY-VDGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ LQ+ +G+I L+ +G + RA A+ L ++ FG+ ++ LQ Sbjct: 119 RVDFEILQQYH-QGIICLSACLAGEVARALNRGLYDEAKAVALKYRDCFGEGNYFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++L+ +PLVATN+ + ++ED ++HDVL+ + + +DR R Sbjct: 178 HGIEEQKNVNQGLMRLSRETGIPLVATNDCHYTNKEDADSHDVLLCIQTGKKLQDEDRMR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y+K+ EM+ +F +A+ T EIA RC ++ LP F E D Sbjct: 238 FETSEFYVKSEEEMLQLFPYATDAIGRTQEIADRCHVEIEFGVTKLPHFEVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL+ G A + + RL +EL VI M + YFLIV DFI + Sbjct: 294 SWTYLNKLCYEGLDR-------RYGDKASELKPRLKYELEVIKNMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + IPVGPGRGS AGS+ +Y IT+IDP+++SL+FERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPMKYSLVFERFLNPERVSMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + V QI+TFG+L+A+ +RDVGR + +PY VD + K+IP D Sbjct: 407 RGEVIDYVIEKYGKDCVTQIVTFGTLKARGVIRDVGRVMDLPYGYVDSIAKMIPMDLGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ +S R +D V L+++++ LEGL R+ HAAG+VI +P+ + VP+ Sbjct: 467 LD-KAMEANSELRAVYESDDQVKNLIDVARTLEGLPRNTGMHAAGVVIAGKPMDEYVPVA 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 R VTQF M IE+ GL+K DFLGL+TLT++ ++ G+K+D+ I ++D Sbjct: 526 RGADGSSIVTQFVMTTIEELGLLKMDFLGLRTLTVINDAVKLVEKNHGIKLDMDAIDYND 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +++ G+FQLES+GM+ ++ ++P IEDIIA +SLYRPGP+D I Y K Sbjct: 586 QGVMDMISAGKCEGVFQLESTGMKNFMKELKPHSIEDIIAGISLYRPGPMDFIPSYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K+ IV P ++P+L T G I+YQEQVMQI Q L+GYSL AD +RRAM KK + + Sbjct: 646 NAKDAIVYDTPELEPILAPTYGCIVYQEQVMQIVQQLAGYSLGGADEIRRAMSKKKQYVI 705 Query: 726 DKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 ++ +E F I G GIS +A I++ + FA Y FNKSHAAAY Sbjct: 706 EENREIFVNGGQIENHITGKITQIPGCVSKGISSEVANGIYDHMVDFAKYAFNKSHAAAY 765 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++ QTA++K +YP+EF+AA MT +D K+ ++ R IQ++PP VN F Sbjct: 766 AVVAIQTAYLKKYYPIEFMAALMTSVIDASGKVAEYIAVCRGNGIQVLPPDVNNGEGRFS 825 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V ++I Y L AIK VG T I+ + + + LEDF R+ N+R +E+L+ A Sbjct: 826 VDGDKIRYGLYAIKSVGRNTIDAIIYDREKNGTYRDLEDFIKRISKYDANKRTIENLIKA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVE 946 GALD +R Q I +KN ++ FA E+ KIT+ K Sbjct: 886 GALDTMDGNRRQKCMVFPEILDSVNNKKKNEIEGQMSLFDFASEEQKEDLKITMPKVDEF 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLA 998 + + E+ ++G Y SGHPLD Y +L+K + + + + + + Sbjct: 946 DKEMLLAFEKELMGVYVSGHPLDDYISLLQKNVTAQANKFLIDEETGEVSVKDDSEVIVG 1005 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ K T++G + ++T + E FP Sbjct: 1006 GMITGITNKYTKQGKAMAFITIEDLTGTIEVIVFP 1040 >gi|323485857|ref|ZP_08091192.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum WAL-14163] gi|323400845|gb|EGA93208.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum WAL-14163] Length = 1176 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 379/1047 (36%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+ + + + + ++AITD ++ ++F + A AGI+P Sbjct: 18 AFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEAGIKP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N ++LL GYQ L+++VS+ + ++ Sbjct: 78 IIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGF-VEGFYYKP 134 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+E +EG+I L+ G + R + A K L ++++FG+ ++ LQ Sbjct: 135 RVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFLELQD 193 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++++ +PL ATN+ ++ +ED E+HD+L+ + V+ ++R R Sbjct: 194 HGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADENRMR 253 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM IF +AL+NT +IA RC+ ++ LP+F E Sbjct: 254 YEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG----YT 309 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR G ++RL++EL VI M + YFLIV DFI + Sbjct: 310 SWEYLRKLCFDGFNKHYPDDDGTL-------KERLEYELGVIQSMGYVDYFLIVWDFIHF 362 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 363 AKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 422 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV +KYG +RV QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 423 RQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGDLGMT 482 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R A D V L+++S++LEGL RH S HAAG+VI + + VP+ Sbjct: 483 LD-KALKASPDLRSAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEYVPLS 541 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605 R TQF M +E+ GL+K DFLGL+TLT++Q ++ + K +DL I ++D Sbjct: 542 RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNIDYND 600 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y K Sbjct: 601 KNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRYLKGK 660 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K+ I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 661 NDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGSVM 720 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + A +I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 721 EKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 780 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT DNV K+ ++ RQ ++I+PP +N F V I Y Sbjct: 781 YLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGGSIRY 840 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK +G + I+ E F +LEDF R+ SK++N+R LES + +GA+D Sbjct: 841 GLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMDSLPG 900 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + +KN +F E+ + ++T Sbjct: 901 TRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDELLYF 960 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006 E+ +LG Y SGHP++ Y + K + G + + M+ +K Sbjct: 961 EKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLTAKTV 1020 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + +VT + E FP Sbjct: 1021 KTTRTNKMMAFVTIEDLYGSVEVLVFP 1047 >gi|302871937|ref|YP_003840573.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574796|gb|ADL42587.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1140 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 381/1033 (36%), Positives = 602/1033 (58%), Gaps = 30/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YSLL+GA ++ + +++ A+AITD ++ ++F + A GI+P Sbjct: 2 SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLL +GY+ L ++VS + ++ Sbjct: 62 IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAIDNDGYRNLSKIVSIGF-VEGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + ++GL+ LT +G I + + + +K++FG+ Y LQ H Sbjct: 118 RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++L+ +++PLVATN+ +L +ED HD+L+ + ++ DR Sbjct: 177 YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLKKEDRNLHDILLCIQTGKTINDSDRMEF 236 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM +F +PEAL+NT+EIA +C+ + LP+F E + + Sbjct: 237 PTDEFYLKSSEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DS 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ A+ G + R ++ + RL EL VI M F YFLIV DFI +A Sbjct: 294 FEYLKELALEGFKKRYSKNN-------KTAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+NNI VGPGRGS AGSV AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC RR Sbjct: 347 KQNNIMVGPGRGSAAGSVVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP P + Sbjct: 407 QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+ Sbjct: 467 DKA-LEINHELKRIYERNDTVRKIIDTARNLEGMPRHASVHAAGVVISNSPITDLVPL-- 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D VTQF M +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL I ++D Sbjct: 524 ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY KN Sbjct: 584 NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +EKI +HP ++P+L T G I+YQEQVMQI + L+GYSL AD++RRAM KK + + Sbjct: 644 NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 ++K+RFI GA NG+ K A IF ++ FA Y FNKSHAAAYA+++YQTA++K +Y +E Sbjct: 704 EEKDRFIEGAVANGVKKETAERIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+ + +T M++ EK+ + ++ R+F I I+PP +N DF + N I + L AIK +G Sbjct: 764 FMTSLITSVMNSNEKVGMYIEECRKFGITILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 HI++ + F L DF RVD+ +N+R++E+L+ +GA D +R LL S+ Sbjct: 824 ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTRINRNSLLASV 883 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++I K + + F G ++ + + + E+ +G Y S Sbjct: 884 EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDTIGIYISS 940 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL+ Y + + + E + I + ++ + K T+ + + Sbjct: 941 HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKSNQTMAFAKL 1000 Query: 1021 SEPAKEYEANFFP 1033 + E FFP Sbjct: 1001 EDLTDSVEILFFP 1013 >gi|301063202|ref|ZP_07203753.1| putative DNA polymerase III subunit alpha [delta proteobacterium NaphS2] gi|300442697|gb|EFK06911.1| putative DNA polymerase III subunit alpha [delta proteobacterium NaphS2] Length = 1155 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 406/1039 (39%), Positives = 607/1039 (58%), Gaps = 19/1039 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VH+ YSLL+GA+ ++ +L+K A ++AITD N+F ++F +A Sbjct: 1 MSDLP-FVHLHVHTEYSLLDGAIRIDRMLEKAKAQGMDSVAITDHGNMFGVVDFFDRAAK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIGC++ + D T + P +VLLV +GY+ L LV+ L Sbjct: 60 AGIKPIIGCEVYVAPGDRRDRTP-SQNGGPNAYHLVLLVMNEQGYKNLSTLVTLGNLQG- 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183 R+ +S L+E +GL+ L+ +G + A+++ +F GDR + Sbjct: 118 FYYHPRVDMSALREY-NQGLVALSACLAGHVPYLIRNGQMDAAKEKAREMASVFDGDRFF 176 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ ++ ++ ++ + +L+ +P+VATN+ +L+ EDYEAHDVL+ + V + Sbjct: 177 LELQANKMAEQKVVNRGLRELSKDLSIPMVATNDCHYLNREDYEAHDVLLCIQTGKSVDE 236 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R R + + Y K R EM D EAL NT +AR C + ++ P F E Sbjct: 237 EKRLRFTSNEFYFKTRREMEEALPDDAEALNNTAHVARLCQYEMRFGEYKFPVFHVPEKQ 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + R L + + ++Y +RL +EL +I +M F+GYFLIVA Sbjct: 297 SLNDMLMALSRKGLARRLAQKEDEEGPIGPELRREYEERLQYELEIILKMGFAGYFLIVA 356 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A ++I VGPGRGS AGS+ AY L IT+I+P+++ LLFERFLNP R+SMPD DID Sbjct: 357 DFIEYALNHDIAVGPGRGSAAGSLVAYCLNITNIEPIKYGLLFERFLNPARISMPDIDID 416 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD+VI+YV +KYG V+QIITFG+++A+ +RDVGR L +P S+VDR+ KL+P Sbjct: 417 FCINGRDQVIQYVADKYGRNNVSQIITFGTMKARGVIRDVGRTLNVPLSEVDRIAKLVPE 476 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + I ++ + A +LL IS+ LEGL RHASTHA G+VI DRPL++ Sbjct: 477 GPGVKLDRA-IREEPELKSLENAPGRSQKLLSISRSLEGLARHASTHACGVVISDRPLTE 535 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600 +P+Y+ + QF M +EK GLIKFDFLGLKTLT+L+++L + K+DL+ Sbjct: 536 YLPLYKGS-KGEIMAQFTMDKVEKLGLIKFDFLGLKTLTVLKEALKLIEASAGLKIDLNR 594 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 I +D TY L T G+FQLESSGM++ L + P+ EDIIALV+LYRPGP+ + + Sbjct: 595 ISLEDKGTYQLCADGKTTGVFQLESSGMKELLRKLNPEIFEDIIALVALYRPGPLGSNMV 654 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + N K+GK ++ P + P+LKET GVI+YQEQVM+IAQ+L+ Y+++EAD LR+A+G Sbjct: 655 DDFINGKHGKIRVSYFLPQLKPILKETYGVILYQEQVMKIAQVLANYTMAEADELRKAVG 714 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M + + RFI GA +NG+S +A +F L+ KF YGFNKSH+AAYA+I+YQTA+ Sbjct: 715 KKKPEVMARHRARFIDGAKENGVSADMAEKLFGLIEKFGGYGFNKSHSAAYAMIAYQTAY 774 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPV+F+ A +TL+M N +K K + R IQI+PP VN DF V +++I + Sbjct: 775 LKAHYPVQFMCALLTLDMGNQDKTIKNIAECRTMGIQILPPDVNESQADFSVVEDQIRFG 834 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAA+K VG ++E F L DFC R++ K+NRRVLE L+ GA D Sbjct: 835 LAAVKNVGQKAVEMLIEERDKHGHFKGLLDFCRRMEGSKVNRRVLEGLIQCGAFDFTNAF 894 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFEN 954 R +L + LD+ K N+F + + + L + Sbjct: 895 RSRLFEGLDDALKLCGARH---DPNQLNMFGSLELGEGEAGGLLELPDLPEWEEKEKLRR 951 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFY +GHPL+ ++ +++ + + ++LA +V S + K+T++G + Sbjct: 952 EKEALGFYITGHPLEGFQKAIKRFATCLVNDLPTQNDKDQVKLAGVVESLKLKRTKRGDK 1011 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 1012 MAIMHLEDLTGSTEVVVFP 1030 >gi|291520859|emb|CBK79152.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus catus GD/7] Length = 1156 Score = 810 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 374/1047 (35%), Positives = 566/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YSLL+G+ + ++ ++ ++AITD ++ ++F ++A GI P Sbjct: 2 DFTHLHVHTEYSLLDGSNKIKELIARVKELGMDSVAITDHGVMYGVIDFYKEAQKQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + G +VLL GY L+++VS+ + + Sbjct: 62 VIGCEVYVAPGSRFDKS--GNMSSNRYHHLVLLAENDTGYHNLMKIVSKGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E EG+I L+ +G I A Q A ++FG D Y+ LQ Sbjct: 119 RVDKELLKEYH-EGIIALSACLAGEIPDALRKGLYQTALNAAQEMSEIFGEDHFYLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ +++LA L LVATN+ + ED +AHDVL+ + V+ DR R Sbjct: 178 HGIPDQKTVNQGLLRLAKDTGLELVATNDIHYTLAEDAQAHDVLLCIQTGKKVADTDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F EA+ENT +IA RC ++ LP F E D Sbjct: 238 YEGGQYYVKSPEEMASLFPYAREAIENTHKIAMRCHVDIEFGHYKLPEFPVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ G R Q + ++R+ +ELN I M F YFLIV DFI + Sbjct: 294 SWEYLQKLVWDGFYERYPQ-------ADEKLKERVSYELNTIKTMGFVDYFLIVWDFIHY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+++I VGPGRGS AGS+ +Y L IT +DP+R++LLFERFLNP+R++MPD D+DFC +R Sbjct: 347 AKEHDIMVGPGRGSAAGSIVSYCLDITTLDPIRYNLLFERFLNPNRVTMPDIDVDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ERV QI+TFG++ A+ +RDVGR L +PY+ D + K+IPN+ Sbjct: 407 RQEVIDYVVRKYGKERVVQIVTFGTMAARGVIRDVGRVLDLPYAICDSVAKMIPNELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++ D S+ L++++++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 ID-KALKMNPELKKLYDGDDSIHNLIDMARRLEGLPRHTSMHAAGVVISPKAVDEFVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 R D+ TQ+ M +E+ GL+K DFLGL+TLT+++ ++ + VD+ I ++D Sbjct: 526 RGA-DDVITTQYTMTTLEELGLLKMDFLGLRTLTVIRNAVKLINADGRHHVDMHEIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + ++ T T GIFQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KAVFDMIGTGKTDGIFQLESSGMKSFMKELKPHNLEDIIAGISLYRPGPMDFIPRYIKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N I P ++ +L+ T G I+YQEQVMQI L+GY L +D++RRAM KK + M Sbjct: 645 NEPASITYECPQLEEILEPTYGCIVYQEQVMQIVMKLAGYDLGRSDLVRRAMSKKKADVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGI + A IF+ + FA Y FNKSHAAAY ++SYQTA Sbjct: 705 AKERQYFVYGNDELGVPGCIANGIDEATANRIFDEMTDFAKYAFNKSHAAAYTIVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V + RI Y Sbjct: 765 WLKYYYPVEFMAALMTSVIDNSVKVAEYIMTCRQMGIKILPPDINHGVSSFSVDNGRILY 824 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+A+K +G I + PF SL++F R+ K++N+R +E+ + AGA D FG Sbjct: 825 GLSAVKSIGRPVVAAIEQERTLAGPFTSLKNFIERMSGKEVNKRSIENFIKAGAFDSFGA 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I K + +F E+ + +I + Sbjct: 885 TRRQQMMVYAQIMDQVAQDRKKNISGQMTLFDFMDEEEKQAFEIRYPNVGEYDKGTLLSF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPLD R+ + + + + + MV K Sbjct: 945 EKEVLGVYISGHPLDDVAESWRRNVTAVTSDFYVNEESGMPNVVDQSLVVIGGMVTGKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++ + E FP Sbjct: 1005 KSTKNNKMMAFIQLEDLLGTVEVIIFP 1031 >gi|255657348|ref|ZP_05402757.1| DNA polymerase III DnaE [Clostridium difficile QCD-23m63] gi|296451837|ref|ZP_06893556.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP08] gi|296879767|ref|ZP_06903741.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP07] gi|296259316|gb|EFH06192.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP08] gi|296429238|gb|EFH15111.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile NAP07] Length = 1189 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 376/1065 (35%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YSLL+G + ++ + +IAITD +F ++F + A Sbjct: 1 MNK--DFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + +VLL EGY+ LI++VS Y ++ Sbjct: 59 EGIKPIIGCEVYTAARGLRDKDPNYDKYQG---HLVLLAKNMEGYKNLIKIVSTSY-VEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ + L++ +G+I L+ +G + RA + + A++ ++ +FG + + Sbjct: 115 FYYKPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFAFDYRDIFGEENFF 173 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ S +V+L+ +PLVATN+ ++++ED + HDVLM + ++ Sbjct: 174 LEIQDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLND 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R R + + YLK+R EM +F EA++NTV+IA C+ + LP++ E Sbjct: 234 PNRMRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG- 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E LR GL+ + + +RL++EL+VI +M + YFLIV Sbjct: 293 ---YTPETYLRELCFNGLKE-------RYDNPSDEILERLNYELDVIEKMGYVEYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID Sbjct: 343 DFINFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP Sbjct: 403 FCYERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKIAKEIPF 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + +E DP ++ IS+++EG+ RHASTHAAG+VI P+ + Sbjct: 463 ALGMTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597 VP+Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + + V + Sbjct: 522 YVPLYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEK 579 Query: 598 --LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 S + +DD + Y +L++ TLG+FQLES+GMR ++ ++PD EDI+A +SL+RPGP+ Sbjct: 580 IDFSKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPM 639 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D+I Y K+ + + +H + P+++ T G ++YQEQVMQ+ + L GYS +D++RR Sbjct: 640 DSIPAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRR 699 Query: 716 AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763 AM KK + M+++++ FI G +NG+ + IA IF+ + FA Y FNK Sbjct: 700 AMSKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNK 759 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAY V++Y+TA++KT+YPVEF+AA +T M N +K+ ++ ++ + I ++PP +N Sbjct: 760 SHAAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINK 819 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I + LAA+K VG +I+ + F L D R+D K N+RV+ Sbjct: 820 SFSKFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVI 879 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDK 937 ESL+ GA D +R L+ +++ + K ++F E F Sbjct: 880 ESLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQI 939 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--- 994 +L K R E+ VLG Y SGHPL ++ L++ + + Sbjct: 940 YSLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYL 999 Query: 995 ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+V+K K T++ + ++ + E FP Sbjct: 1000 QMNETDVIMGGMIVTKTIKTTKRNEIMAFLELEDLYGAIEIVVFP 1044 >gi|158319634|ref|YP_001512141.1| DNA polymerase III DnaE [Alkaliphilus oremlandii OhILAs] gi|158139833|gb|ABW18145.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 1164 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 397/1057 (37%), Positives = 614/1057 (58%), Gaps = 49/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VH+ YSLL+G +N ++++ AIAITD ++F ++F + A Sbjct: 1 MSNQ--FVHLHVHTEYSLLDGFTVINKAMERVKEMGMNAIAITDHGSMFGVVDFYKAAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + Q +VLL EGYQ +I++VS +L + Sbjct: 59 NGIKPIIGCEVYTAPRSMADKDPQKDKNQG---HLVLLAKNEEGYQNIIKMVSNGFL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183 RI L E ++G+I L+ +G I + + + A+ L +F + Y Sbjct: 115 FYYKPRIDYDEL-ERHSKGIICLSACLAGDIQQLLLQDQYESAKALALRLNAMFEENSFY 173 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ +++L+ +PLVATN++ ++++ED +AHD+L+ + +V Sbjct: 174 LELQDHNMAEQKKVNLGLIKLSRETGIPLVATNDAHYINKEDAKAHDILLCIQTGKIVED 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R R + YLK+ EM+ IF PEA+ NTV+IA +C+F + LP + + Sbjct: 234 QERMRFPNDEFYLKSPEEMMKIFDFAPEAISNTVKIAEQCNFDFDFNTIHLPEYHVPQDV 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E+ LR GL ++ RL+ EL+VI +M + YFLIV Sbjct: 294 NK----EDYLRKLCFEGLNK-------RYTSVTEELESRLEGELSVIEKMGYVEYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK N IPVGPGRGS AGS+ AY L ITD+DP++++L+FERFLNP+R+SMPD DID Sbjct: 343 DFIKYAKDNGIPVGPGRGSAAGSIVAYTLGITDVDPIKYNLIFERFLNPERISMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+ KYG ++VAQIITFG++ A+AA+RDVGR + MPY++VD++ K IP Sbjct: 403 FCYERREEVIDYVKQKYGEDKVAQIITFGTMAARAAIRDVGRVINMPYNEVDKIAKQIPF 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + + + L++++++LEG+ RHASTHAAG+VI +PL + Sbjct: 463 AIGMTIE-KALKMNPELKSIYEENEQGRYLIDMARRLEGMPRHASTHAAGVVIAKKPLKE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600 VP+Y V D TQF M +E+ GL+K DFLGL+TLT+++ ++D G+K+DLS Sbjct: 522 HVPLY--VHDDNSTTQFTMGTLEELGLLKMDFLGLRTLTVIKDAIDLIEKNHGIKLDLSD 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +DD + Y L++ TLG+FQLES+GM Q L+ ++P+C EDIIA +SLYRPGP+D+I Sbjct: 580 SKYDDEKVYDLISKGDTLGLFQLESAGMIQFLKELKPNCFEDIIAGISLYRPGPMDSIPR 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN EKI IH ++P+L T G ++YQEQ+MQI + L+GYS +D++RRAMGKK Sbjct: 640 YIENKNNPEKIKYIHESLEPILNVTYGCMVYQEQIMQIVRDLAGYSYGRSDLVRRAMGKK 699 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 + M+++++ FI G +NG+ + +A I++ + FA+YGFNKSHAAA Sbjct: 700 KMDVMEQERKNFIYGIVNEKGEVEVAGCIRNGVPEDVANKIYDEMIDFANYGFNKSHAAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV++Y+TA++KT+Y VEF+AA MT M N K+ ++ QD ++ NI+I+PPS+N F Sbjct: 760 YAVLAYETAYLKTYYKVEFMAALMTSVMGNTSKVVQYIQDCKKQNIKILPPSINRSFSKF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V I ++L A+K VG ++++ F + DFC RV+SK +N+R +ESL+ Sbjct: 820 TVEGESIRFALGAVKNVGIGMINNLVQIRETTGDFSTFLDFCQRVESKDINKRAVESLIK 879 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945 GA D G +R QL+ S + I Q ++ + ++F E + + Sbjct: 880 CGAFDNMGGNRAQLMASFEGIMDNIQQEKRRKLEGQIDLFQMNEEMDASMNTVNFPDIKD 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIR 996 + +R E+ V+GFY SGHPL Y+ L ++ + + G I Sbjct: 940 FSEKIRLSMEKEVVGFYISGHPLSEYEKELEQIVSANSAQLIEAMENLAESQLKDGQPII 999 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M+ K TR + ++ + E FP Sbjct: 1000 VGGMIAEINSKITRNNQMMAFIVLEDLFGSLECIVFP 1036 >gi|291458628|ref|ZP_06598018.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419161|gb|EFE92880.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 1188 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 374/1050 (35%), Positives = 583/1050 (55%), Gaps = 43/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+SYSLL+GA + ++ ++ A+AITD ++ ++F ++A A GI P Sbjct: 29 SFTHLHVHTSYSLLDGAGKIPEMIARVKELGMDAVAITDHGVMYGVIDFYKEAKAQGIHP 88 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + +VLL EGY L++LV+R + + Sbjct: 89 ILGCEIYLSPASRFDKSF--GKAEARYYHLVLLAENEEGYHNLMKLVTRGFT-EGFYYKP 145 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ GLI L+ +G + R + + A L ++++FG ++ LQ Sbjct: 146 RVDFELLRRYH-GGLIALSACLAGELARDLSRDQYEEARDAALRYQEIFGKGNFFLELQD 204 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++L +P+VATN+ + ED +AHD+L+ + ++ +DR R Sbjct: 205 HGYPEQRKVNQGLLRLHEDTGIPMVATNDIHYTFREDAKAHDILLCLQTGKKLNDQDRMR 264 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y+K+ EM +F EA+ NT +IA RC ++ LP++ + Sbjct: 265 YPGGQFYIKSEEEMRELFPYAEEAILNTEKIAERCQVEIEFGHYHLPKYEVPDGF----T 320 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR GL G A+ YR+RL +EL+VI+ M F+ YFLIV D+I + Sbjct: 321 PLSYLRKLCEEGLVR-------RYGEEAEHYRERLSYELSVISSMGFTEYFLIVWDYIHF 373 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ AY++ ITDIDP+R+ LLFERFLNP+R++MPD D+DF +R Sbjct: 374 AKTHGIAVGPGRGSAAGSIVAYSIGITDIDPMRYQLLFERFLNPERVTMPDIDVDFEYER 433 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG E+V+QIITFG+L AK +RDVGR + +PY++ D + KLIPN+ Sbjct: 434 RQEVIDYVTKKYGKEQVSQIITFGTLAAKGVVRDVGRVMDIPYAKCDMIAKLIPNELNMT 493 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ ++ D R++++S++LEGL RH+STHAAG+VI + + VP+ Sbjct: 494 LE-RALFGSPDLKKLYEEDEETRRIIDMSRRLEGLPRHSSTHAAGVVIAGSAVEEFVPLS 552 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 ++ TQF M +E+ GL+K DFLGL+TLT++Q ++ F + ++DL + ++D Sbjct: 553 KN-TDGAVTTQFTMTTVEELGLLKMDFLGLRTLTVIQDAIRFAEKDYGKRIDLERMDYED 611 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y +++ G+FQLES GM ++ ++P +ED+IA VSLYRPGP+D I Y K Sbjct: 612 PKVYEMISRGDCAGVFQLESGGMVSFMKRLRPTSLEDVIAGVSLYRPGPMDFIPKYIEGK 671 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 E++ HP I+P+LK T G I+YQEQVMQI + L+GYS+ +D+LRRAM KK M Sbjct: 672 KHPERVSYEHPRIEPILKSTYGCIVYQEQVMQIVRELAGYSMGRSDLLRRAMSKKKASVM 731 Query: 726 DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K++ F I G GIS+ +A +I++ + FA Y FNKSHAA YA+I+YQTA Sbjct: 732 EKERRNFVYGNPEEGIPGCLSAGISEQVANHIYDEMIDFAKYAFNKSHAACYALIAYQTA 791 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF AA M+ MDN K ++ + AR I I+PP +N F V D I Y Sbjct: 792 YLKCYYPAEFYAALMSSFMDNAGKTAEYLEFARDREIPILPPDINLAESGFSVSDASIRY 851 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+A+KG+G + A I+ E F LEDF R+ + +NRR +ESL+++GALD Sbjct: 852 GLSAVKGIGRSAAEQIIEERRRGGKFRDLEDFLLRISDRGVNRRAVESLIYSGALDSLPG 911 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHE-KGTFSDKITLEKFSVENSSVRF 952 +R + + +L + + ++N ++ + + + + T+ + Sbjct: 912 NRREKVTALPFLLESKSKEKRNAMAGQMTLADLLGEDNEEAEAFRFTMPVLPEFPKAELL 971 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNNIRLAAMVVS 1003 NE+ LG Y SGHPLD + +L G + + ++ Sbjct: 972 RNEKDALGVYLSGHPLDSDRELLDFYVDAKAGAFRTDPESGEEGGLSEGQLVTVGGLLTE 1031 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +QK T+K + ++T + E FP Sbjct: 1032 IRQKVTKKNELMAFLTLEDRQGSIEVTVFP 1061 >gi|126701019|ref|YP_001089916.1| DNA polymerase III DnaE [Clostridium difficile 630] gi|254977018|ref|ZP_05273490.1| DNA polymerase III DnaE [Clostridium difficile QCD-66c26] gi|255094345|ref|ZP_05323823.1| DNA polymerase III DnaE [Clostridium difficile CIP 107932] gi|255102599|ref|ZP_05331576.1| DNA polymerase III DnaE [Clostridium difficile QCD-63q42] gi|255308424|ref|ZP_05352595.1| DNA polymerase III DnaE [Clostridium difficile ATCC 43255] gi|255316098|ref|ZP_05357681.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55] gi|255518759|ref|ZP_05386435.1| DNA polymerase III DnaE [Clostridium difficile QCD-97b34] gi|255651937|ref|ZP_05398839.1| DNA polymerase III DnaE [Clostridium difficile QCD-37x79] gi|260684901|ref|YP_003216186.1| DNA polymerase III DnaE [Clostridium difficile CD196] gi|260688559|ref|YP_003219693.1| DNA polymerase III DnaE [Clostridium difficile R20291] gi|306521687|ref|ZP_07408034.1| DNA polymerase III DnaE [Clostridium difficile QCD-32g58] gi|115252456|emb|CAJ70299.1| DNA polymerase III DnaE subunit alpha [Clostridium difficile] gi|260211064|emb|CBA66425.1| DNA polymerase III alpha subunit [Clostridium difficile CD196] gi|260214576|emb|CBE07133.1| DNA polymerase III alpha subunit [Clostridium difficile R20291] Length = 1189 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 377/1065 (35%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YSLL+G + ++ + +IAITD +F ++F + A Sbjct: 1 MNK--DFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + +VLL EGY+ LI++VS Y ++ Sbjct: 59 EGIKPIIGCEVYTAARGLRDKDPNYDKYQG---HLVLLAKNMEGYKNLIKIVSTSY-VEG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ + L++ +G+I L+ +G + RA + + A++ L ++ +FG + + Sbjct: 115 FYYKPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFF 173 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ S +V+L+ +PLVATN+ ++++ED + HDVLM + ++ Sbjct: 174 LEIQDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLND 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R R + + YLK+R EM +F EA++NTV+IA C+ + LP++ E Sbjct: 234 PNRMRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG- 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E LR GL+ + + +RL++EL+VI +M + YFLIV Sbjct: 293 ---YTPETYLRELCFNGLKE-------RYDNPSNEILERLNYELDVIEKMGYVEYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID Sbjct: 343 DFINFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP Sbjct: 403 FCYERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPF 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + +E DP ++ IS+++EG+ RHASTHAAG+VI P+ + Sbjct: 463 ALGMTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDE 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597 VP+Y+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD + + V + Sbjct: 522 YVPLYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEK 579 Query: 598 --LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 S + +DD + Y +L++ TLG+FQLES+GMR ++ ++PD EDI+A +SL+RPGP+ Sbjct: 580 IDFSKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPM 639 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D+I Y K+ + + +H + P+++ T G ++YQEQVMQ+ + L GYS +D++RR Sbjct: 640 DSIPAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRR 699 Query: 716 AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763 AM KK + M+++++ FI G +NG+ + IA IF+ + FA Y FNK Sbjct: 700 AMSKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNK 759 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAY V++Y+TA++KT+YPVEF+AA +T M N +K+ ++ ++ + I ++PP +N Sbjct: 760 SHAAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINK 819 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I + LAA+K VG +I+ + F L D R+D K N+RV+ Sbjct: 820 SFSKFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVI 879 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDK 937 ESL+ GA D +R L+ +++ + K ++F E F Sbjct: 880 ESLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQI 939 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--- 994 +L K R E+ VLG Y SGHPL ++ L++ + + Sbjct: 940 YSLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYL 999 Query: 995 ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+V+K K T++ + ++ + E FP Sbjct: 1000 QMNETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFP 1044 >gi|150391763|ref|YP_001321812.1| DNA polymerase III DnaE [Alkaliphilus metalliredigens QYMF] gi|149951625|gb|ABR50153.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF] Length = 1155 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 400/1053 (37%), Positives = 600/1053 (56%), Gaps = 48/1053 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+G ++N LD++ A+AITD ++F ++F + A GI+P Sbjct: 2 SFVHLHVHTQYSLLDGFATINQTLDRVKELGMDALAITDHGSMFGVVDFYKAAKKKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + MT++ + +VLL GYQ LI+LVS YL Sbjct: 62 IIGCEVYTAARG---MTDKDPVKDKSQGHLVLLAKNNVGYQNLIKLVSESYLH-GFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + + + TEGLI L+ +G + R N + A+++ L +++FG Y+ LQ Sbjct: 118 RVDYNEIAK-HTEGLIALSACLAGEVQRLILQNQYEKAKEKALMLEEMFGKGNFYLELQD 176 Query: 189 HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H+ + + +++++ +PLVATN+ + +ED EAHD+L+ + +++ + R + Sbjct: 177 HKLPEQQQVNEELIKMNQETGIPLVATNDVHYTDQEDAEAHDILLCIQTGKILNDEKRLK 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK + EM +F PEAL NTV+IA C LP + K Sbjct: 237 FPNDQFYLKTQKEMAKLFDYAPEALANTVKIAEMCQVDFDFDTIHLPNYDVAPG----KT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR GL+ Q+ ++RL++EL +I +M + YFLIV DFI++ Sbjct: 293 KQGYLRELCYEGLQY-------RYKEITQELKERLEYELGIIEQMGYMEYFLIVWDFIKY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK I VGPGRGS AGS+ AY L ITDIDP+R++L+FERFLNP+R+SMPD DIDFC +R Sbjct: 346 AKDQGIAVGPGRGSAAGSIVAYTLGITDIDPIRYNLIFERFLNPERVSMPDIDIDFCYER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV+ KYG ++VAQIITFG++ A+ A+RDVGR + MPY++VD++ K IP Sbjct: 406 REEVINYVKAKYGQDKVAQIITFGTMAARGAIRDVGRVVNMPYNEVDQIAKEIPFTLGIT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ + + L+ +++KLEG+ RHASTHAAG+VI +PL Q +P+Y Sbjct: 466 IE-KALEVNPVLRKMYQENDDANYLIRMAKKLEGMPRHASTHAAGVVIAKKPLDQHIPLY 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + TQF M +E+ GL+K DFLGL+TLT+++ +L+ + G++V + D Sbjct: 525 M--HDNSMTTQFTMGTLEELGLLKMDFLGLRTLTVIRDALELIKANHGLEVSFEDSEYTD 582 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y L+ TLG+FQLES GM Q + ++PD EDI+A +SL+RPGP+++I Y K Sbjct: 583 PKVYELIGRGETLGVFQLESQGMIQFMRELKPDNFEDIVAGISLFRPGPMESIPKYIEYK 642 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N EKI +H ++P+L T G ++YQEQVMQ+ + L+GYS +D++RRAMGKK ++ M Sbjct: 643 NNHEKIEYLHESLEPILNMTYGCMVYQEQVMQVVRDLAGYSYGRSDLVRRAMGKKKRDVM 702 Query: 726 DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +++++ FI G + GI + IA I++ + FA+Y FNKSHAA+YAV+S Sbjct: 703 EEERKYFIYGKESEAGELEIEGCIRRGIPENIANEIYDQMIDFANYAFNKSHAASYAVLS 762 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HYPVEF+AA MT M N K+ + QD ++ ++I+ PS+N F V DN Sbjct: 763 YQTAYLKCHYPVEFMAALMTSVMGNTLKVVHYIQDVKRQGMEILSPSINKSYSKFAVEDN 822 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I + LAA+K VG I+E F S DFC +V SK LN+R +ESL+ GA D Sbjct: 823 QIRFGLAAVKNVGGNMIDAIVETRNHKGSFTSFTDFCQKVPSKDLNKRSIESLIKCGAFD 882 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950 C R QLL + + K +F G S ++ L N + Sbjct: 883 CLEVYRAQLLAIYEKVLDSVYHDRKRNIQGQLGLFEGPSGMPSNLNEGLLPNIKEFNDKL 942 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----------VATIRGNNIRLAAM 1000 R E+ VLG Y SGHPL Y+ L K + G+ + + + Sbjct: 943 RLNMEKEVLGLYISGHPLAAYEKELSKKVSAYSNQLVLSLEEDDNEQEWKEGDRVIIGGI 1002 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V+ K K T+ + +VT + E FP Sbjct: 1003 VIEKTIKTTKHQQIMAFVTVEDLFGVVECVVFP 1035 >gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 1146 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 565/1028 (54%), Positives = 727/1028 (70%), Gaps = 12/1028 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+ SLLEGAL + +LD AD QPA+AITDT NLF A EFS KA AGIQPI Sbjct: 6 FVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFSGKAWGAGIQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQL + D + + P + +VLL ++ GY L+EL SR YL Sbjct: 66 IGCQLAVAFDDG---GGEDRRGEPPLLDVVLLAASEAGYGNLMELSSRAYLDTATGLKPH 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L+E + GLI+LTGG +GPI RA + +AE RL F +R YV LQRH Sbjct: 123 VPAALLEEK-SGGLILLTGGVNGPIGRALLAGNRTLAEARLKRLAAAFPNRTYVELQRHG 181 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R E ++LAY LPLVATN + F EDYEAHD L+ +A V+ ++DR ++T Sbjct: 182 MAEERRCEPGFLELAYELGLPLVATNEAFFPKREDYEAHDALICIAEGRVLIEEDRRKLT 241 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307 P+HY K+R+EM+ +F DLPEA NTVEIARRC + PILPRF + + + +K E Sbjct: 242 PEHYFKSRAEMLELFCDLPEATANTVEIARRCHYRPLRRDPILPRFAGADADPEAAEKAE 301 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ELR +A GL+ RL +A G QDY RLD+EL VI RMKF GYFLIVADFI+WA Sbjct: 302 AEELRRQARDGLKARLEAHGLAPGLGQQDYWDRLDYELGVIERMKFPGYFLIVADFIKWA 361 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGSV A+ALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR Sbjct: 362 KAHDIPVGPGRGSGAGSVVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQYRR 421 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG +VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV Sbjct: 422 EEVIRYVQEKYGRRQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 481 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + QAI D+ R REA + VDRLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y Sbjct: 482 TLAQAIGDEPRLREAAREEEIVDRLLTMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 541 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ +A++GV VD++ +P DD Sbjct: 542 RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIARKGVTVDMASVPLDDA 601 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL T+G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+ Sbjct: 602 RTYQLLARGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 661 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+++ +HPL++P+LKET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 662 GEQEADYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 721 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ GA + G+ + A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE Sbjct: 722 VQRARFVDGAVERGVDRDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 781 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AASMTL++ N +K+ F Q+AR+ I I+PPS+N F V D RI Y+L AIKGVG Sbjct: 782 FMAASMTLDLGNTDKLGDFRQEARRMGIAIVPPSINRSMHPFDVDDGRIVYALGAIKGVG 841 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 +HI+EA +PF SL DF RV + LN+R LESL AGA D +R ++L+ LD Sbjct: 842 EQAVQHIVEARGTQPFRSLGDFARRVSPRFLNKRTLESLAAAGAFDDLEPNRARVLEGLD 901 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I AQ E+N +F G + + L + + + R + E +GFY S H Sbjct: 902 RIIGIAQRTEENSVLGQNELF--GGGGEEEDLHLPEVAAWMPAERLQREHAAIGFYLSSH 959 Query: 967 PLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD Y+P+L +M ++ + + A RG + RLA V+S+Q++KT+ G+R+G V S+ + Sbjct: 960 PLDEYQPLLERMRVQSWAQFSEAVKRGASAGRLAGTVISRQERKTKSGNRMGIVRLSDAS 1019 Query: 1025 KEYEANFF 1032 ++EA F Sbjct: 1020 GQFEALLF 1027 >gi|153813022|ref|ZP_01965690.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174] gi|149830824|gb|EDM85914.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174] Length = 1155 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 376/1046 (35%), Positives = 587/1046 (56%), Gaps = 41/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + +D++ + AITD ++ ++F + A AAGI PI Sbjct: 3 FTHLHVHTEYSLLDGSNKIKEYVDRVKELGMDSAAITDHGVMYGVIDFYRAARAAGINPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + +VLL +GY L+++VS+ + ++ R Sbjct: 63 LGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYSNLMKIVSKGF-VEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L L++ EG+I L+ +G + R + A+ L ++ +FG ++ LQ H Sbjct: 120 VDLQLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q++++ + LVATN+ + ED + HDVL+ + ++ +DR R Sbjct: 179 GIPEQQNVNQQLLKMHRETGIDLVATNDVHYTLAEDAQPHDVLLCLQTGKKLADQDRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F EALENT +IA+RC ++ LP+F + Sbjct: 239 EGGQYYVKSPEEMERLFPYATEALENTHKIAQRCHVEIEFGVTKLPKFGVPDG----YTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GLE R ++ ++RL++EL I M + YFLIV DFI++A Sbjct: 295 WEYLNELCFKGLEERYQP-------VTEELKERLNYELTTIKNMGYVDYFLIVWDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 348 RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV+ KYG + V QI+TFG+L A+ +RDVGR + +PY+QVD + K+IP + + Sbjct: 408 QEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + F++ D + L++ +++LEGL RH S HAAG+VI + +S+ VP+ R Sbjct: 468 D-KALQMNPEFKKVYEEDKEIHELIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 VTQF M +E+ GL+K DFLGL+TLT++Q ++ + Q GVK+D+ I ++D Sbjct: 527 AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLVEQDTGVKLDMQHIDYNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 586 KVLDSLGTGHSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M+ Sbjct: 646 RPDTIKYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 706 KERQNFVYGNEAEGVPGCIANGIPEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAF 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT ++ K+ ++ Q R+ NI+I+PP VN F V + I Y Sbjct: 766 LKYYYPVEFMAALMTSVIEMPIKVAEYIQVCRKMNIKILPPDVNRGAYGFSVDNGAIRYG 825 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK VG ++E A+ + SL+DF R+ + +N+R +E+ + AGALDC + Sbjct: 826 LSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEGN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + I +KN ++F E+ +I + + + E Sbjct: 885 RRQKMVVYSQIVDSIAQEKKNSFAGQMSLFDLVGEEDKKDYEIRMPDVEEYDKDMILGFE 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ I+ KM + G + + M+ K K Sbjct: 945 KDVLGIYLSGHPLEKYRNIMEKMISARTIDFQPDEESGIPKVYDGQKVIIGGMITEKTIK 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 TR + ++T + E FP Sbjct: 1005 YTRNNKVMAFLTLEDLMGTVEIVVFP 1030 >gi|253682356|ref|ZP_04863153.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873] gi|253562068|gb|EES91520.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873] Length = 1166 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 364/1061 (34%), Positives = 590/1061 (55%), Gaps = 57/1061 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++ + ++AITD +F ++F +KA AGI+PI Sbjct: 6 FVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKDAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +VLLV +GY+ L+++VS+ + + R Sbjct: 66 IGCEIYVSSNSMHIKRLDAENR---NHHLVLLVKNEQGYKNLMKIVSKASI-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L+E +EGLI L+ +G + + + A + L +K +F + Y+ LQ H Sbjct: 122 VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREIALFYKDIFKEGFYIELQYHG 180 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +V+LA ++PLVATN+ ++ +ED ++H+VL+ + + +DR + Sbjct: 181 IDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMKYE 240 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P ++ K+ EM FS + +ALENT +IA C+F H LP F E D Sbjct: 241 PQNFYLKSPEEMYETFSYVSDALENTNKIADECNFDYIFHESKLPNFPLPEGID----HF 296 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ++ GLE I + ++RL++EL+VI M + YFLIV DF +++ Sbjct: 297 EYMKELCYKGLE-------IRYEKVTDELKERLEYELDVIKEMGYVDYFLIVWDFFRFSH 349 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR Sbjct: 350 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP + Sbjct: 410 EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + RE D + L+++++ LEGL RH STHAAG+VI +PL VP+ ++ Sbjct: 470 -KALEMNPELREVYDKDTRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 + VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + +++DL I F+D Sbjct: 529 --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGIEIDLDKINFEDEN 586 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y++L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y KN Sbjct: 587 VYNMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I I P ++ +L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK + M++ Sbjct: 647 PKNIEYITPELEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706 Query: 728 QKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +++ FI G +NGIS+ A I++ + FA Y FNKSHAAAY V++Y T Sbjct: 707 ERKNFIYGIEENGKVVVPGCLRNGISEESANKIYDQMMDFASYAFNKSHAAAYGVVAYYT 766 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++ +YP EF+AA + N +K+ + + A+Q +I+ +PP +N F V + +I Sbjct: 767 AYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKIR 826 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+AIK VG I+++ + F+S DFC+++ +N+R++ESL+ AG D FG Sbjct: 827 FGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDSFG 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954 R QLL + I K ++F + F +I N + Sbjct: 887 IYRSQLLAVYEKIIDSVVSQRKKNIEGQVSLFGNFDNEFKGVEIKYPAIDEFNKKSKLAM 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIRG 992 E+ + G Y +GHPL+ Y+ IL+ + + G Sbjct: 947 EKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIMDESLEEDLVDEVTLHVEEQNSKIKDG 1006 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + ++ + +K T+ S + ++ + E FP Sbjct: 1007 DKVIIGGLITNVTRKITKTNSMMAFINLEDLYSSIEVIIFP 1047 >gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571] gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571] Length = 1144 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 546/1030 (53%), Positives = 727/1030 (70%), Gaps = 11/1030 (1%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + P FVHL VHSSYSLLEGAL+L + D AD QPA+A+TDT NLF ALEFS+K AG Sbjct: 2 RDPGFVHLHVHSSYSLLEGALTLGKLADFAKADAQPALALTDTGNLFGALEFSEKMYGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IQPI GC L +D+ + + + P P IVLL + +G++ L+ LVSR YL Sbjct: 62 IQPIAGCSLALDLPEPVAP----RGIVPKKPRIVLLAAREQGWRNLMTLVSRAYLETPDG 117 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + R+ L WL E+ +GLI LTGG +GP+D+A VA RL ++GDRLYV L Sbjct: 118 EEPRVTLDWLSEL-NDGLIALTGGPAGPLDKALVAGHGDVAASRLDQLTAIYGDRLYVEL 176 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH +R E ++ LAY LPLVA N F ++ DY AHD L+A+A S ++S+ DR Sbjct: 177 QRHNWDPERIAEPGLLDLAYAKGLPLVAANEPFFGAQSDYNAHDALIAIAESKLLSEGDR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+TP+H K R+EM+ +F+DLPEA NTVEIA+RC++ ++ PILPRF D Sbjct: 237 RRLTPEHRFKTRAEMLELFADLPEATANTVEIAQRCAYRVRTAKPILPRFTSGGGGDALA 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EE EL +A GL RLA+ A+G + Y +RL +E++VI +MKF GYFLIV+DFI+ Sbjct: 297 EEAAELERQAQEGLAARLAKHGPAEGLDTKIYEERLAYEISVITKMKFPGYFLIVSDFIK 356 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AY+L ITD+DPLRF LLFERFLNPDR+SMPDFD+DFCQD Sbjct: 357 WAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQD 416 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI YVQ +YG +VAQIITFG+LQA+ LRDVGR L+MPY QVD+LCKL+P +PA+ Sbjct: 417 RREEVIDYVQKRYGRSQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPAN 476 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+ QAI ++ R +EAR + V + +I+ +LEGL RHASTHAAGIVIGDRPL +LVP Sbjct: 477 PVTLKQAIEEEPRLQEARDEEEVVKQAFDIAVRLEGLNRHASTHAAGIVIGDRPLHELVP 536 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + ++ + QRG+ +D+S IP D Sbjct: 537 LYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTITTAVKLIRQRGIDLDISKIPLD 596 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +L T+G+FQ+ES+GMR+AL M+ D IED+IALV+LYRPGP+ NI VY + Sbjct: 597 DPKTYAMLARGETVGVFQVESAGMRRALVDMKADRIEDLIALVALYRPGPMANIPVYCDC 656 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ + IHP ++P LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E Sbjct: 657 KHGRAEPDYIHPKLEPYLKETFGVIIYQEQVMQIAQALSGYSLGEADLLRRAMGKKIRAE 716 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M+KQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +Y Sbjct: 717 MEKQRARFVDGAQERGVPKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKANYA 776 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EFLAASMTL+M N +K+ +F Q+A++ IQ++PP++N DF V D +I Y++AAIKG Sbjct: 777 TEFLAASMTLDMGNTDKLAEFRQEAQRLGIQVVPPNINLSHRDFAVVDGKIIYAMAAIKG 836 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG ++ + +PF L DF +R K LN+R LE+L AG D +R ++ + Sbjct: 837 VGGHAVDALVASRGKEPFTDLADFANRFPVKHLNKRTLENLAAAGCFDVLEKNRARVFAA 896 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 LD + +AQ VE +R++ ++F G K+ L + R + E +GF+ + Sbjct: 897 LDAVVAHAQRVEADRSSGQNDMFG--SGPVKAKLPLPDAQPWEPAERLKREYDTIGFFLT 954 Query: 965 GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 GHPLD Y P L+KM ++ + + A +G RLAA VVS+Q++KT+ G+R+G V S+ Sbjct: 955 GHPLDDYAPALKKMRVQQFSDFSRAVRQGAAAGRLAATVVSRQERKTKTGNRMGIVGLSD 1014 Query: 1023 PAKEYEANFF 1032 P+ +EA F Sbjct: 1015 PSGHFEAVLF 1024 >gi|225018880|ref|ZP_03708072.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM 5476] gi|224948350|gb|EEG29559.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM 5476] Length = 1155 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 372/1032 (36%), Positives = 580/1032 (56%), Gaps = 28/1032 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +SLL+GA + + Q A+AITD N+F ++F A GI+PI Sbjct: 26 FVHLHLHTEFSLLDGACRIKELAAYAKKLGQDALAITDHGNMFGTIDFYSACKAEGIKPI 85 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++ T +VLL GY+ LI+LVS Y+ + R Sbjct: 86 IGCEVYVAPRTRFDKVHRIDTSPN---HLVLLCKNETGYRNLIKLVSAGYI-EGFYSRPR 141 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I + LQE +EGLI L+ +G I RA A++ ++ G D ++ LQ H Sbjct: 142 IDHNLLQE-HSEGLIALSACLAGEIPRALTAGDYGRAKQIAEFYRDTMGPDNYFIELQDH 200 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+V+LA + LVATN+ ++ ED + VL+ + + ++ Sbjct: 201 GIKEQRAILPQLVKLAQQVGVGLVATNDVHYIRREDSKTQKVLLCIQTGKTLDEELAIEF 260 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + YLK+ EM S+F A+ENT IA RC+ + LP F +D + Sbjct: 261 PTQEFYLKSEEEMQSLFGSFEGAIENTARIAERCNLEFEFGVTKLPHFEPPNGEDNK--- 317 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 GL+ + R +E++VI M F Y+LIV DF+++A Sbjct: 318 -EFFLRLCHDGLKKYYGEQPD------PKILDRFHYEIDVIDSMGFVDYYLIVYDFVRYA 370 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K++ IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC +RR Sbjct: 371 KEHGIPVGPGRGSGAGSIIAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYERR 430 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EV+ YV KYG + VAQI+TFG+L A+ A+RDVGR + MPY VD++ K +P P + Sbjct: 431 PEVLDYVIRKYGADHVAQIVTFGTLAARGAIRDVGRVMGMPYDVVDKIAKQVPIHPGITI 490 Query: 488 SLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++ + + + +DP V L++ ++KLEG+ R+ STHAAG+VI D+P++ VP+ Sbjct: 491 TIDSALKKSPELKAMADSDPQVRELIDTARKLEGMPRNTSTHAAGVVITDKPVTDYVPLS 550 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 ++ + VTQ+ M I GL+K DFLGL+ LT++ + + + + ++ IP DD Sbjct: 551 KN--DESIVTQYTMNTIADLGLLKMDFLGLRNLTVISDAERGVRRFEPEFAINKIPLDDK 608 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ET+ +L+ + G+FQ ES+GMR+ L M+PDC+ED+IA++SLYRPGP I + + Sbjct: 609 ETFDMLSQGQSDGVFQFESAGMRKMLSRMKPDCLEDLIAVLSLYRPGPAQFIDAFIENRI 668 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E+I + +L T GVI+YQEQVMQI + L+GYS ADV+RRA+ KK M+ Sbjct: 669 HPERITYRDERLRHILDVTYGVIVYQEQVMQIFRELAGYSYGRADVVRRAISKKKAGVME 728 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ +FI GA NG+S+ A IF ++ FA Y FNKSHAAAY+++SYQTA++K HYP E Sbjct: 729 QERIKFIEGAVANGLSERDAEAIFNDMSSFASYAFNKSHAAAYSLVSYQTAYLKCHYPRE 788 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 ++AA + + + +K+ + + R+ +IQ++PP +N + F V D I + L A+K VG Sbjct: 789 YMAALLNSVIYSTDKVISYIGECRKQHIQVLPPDINRSQIGFTVSDGSIRFGLLAVKKVG 848 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+E A+ F+SL +F R+ +++LN+ + + + GA D F +R Q+ +S Sbjct: 849 KGVIERIVEEREANGAFESLYNFVERMHNRELNKAAILAFIQCGAFDSFEENRRQMAESY 908 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + I + +++ N N+F GT +K + + + E++ G Y S Sbjct: 909 ERIVESVNSSKRSNINGQINLFETVTGT--EKFSYPELEEYTTDELMAMERQTTGLYISS 966 Query: 966 HPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPLD + L+ I E G + L A+V S ++ +T+ G+ + + Sbjct: 967 HPLDRFDKQLKGRRIDQISEIQQEESSYCDGAHAELGAIVASVKRIQTKGGALMAFAELE 1026 Query: 1022 EPAKEYEANFFP 1033 + EA FP Sbjct: 1027 DRTGSIEAVVFP 1038 >gi|313895480|ref|ZP_07829036.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str. F0430] gi|312975606|gb|EFR41065.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str. F0430] Length = 1130 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 378/1032 (36%), Positives = 591/1032 (57%), Gaps = 26/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + ++ + +IAITD ++ A+ F ++A A GI P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSIAITDHGVMYGAIAFYKEAMAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q + ++LL GY+ L+ LVS + + Sbjct: 62 IIGCEVYVAPQSRHERAEVDGVR---YYHLILLAENEIGYRNLVRLVSLANI-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ +G I R+ + ++ L + +FG D ++ LQ Sbjct: 118 RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + L+ H++ LVATN+ ++ ED E HD+L+ V ++ +R R Sbjct: 177 HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD+YLK+ +EM ++F D P A+ENT +IA RC LP + E + Sbjct: 237 FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEKF---AD 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR + + R RLD+EL VI M ++ YFLIV DFI + Sbjct: 294 DDAYLRTLCEE-------RLPERYSEITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 347 ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V + KL+P++ Sbjct: 407 RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + FR D SV R++++++K+EGL R+ S HAAG+VI PL+ VP++ Sbjct: 467 ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + VT+F+ +E GL+K DFLGL+TL++++ +L + G+ +D+ IP +D Sbjct: 526 --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + + + Sbjct: 584 DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK Sbjct: 644 GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHA 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + QKE F++G + NGI +A +IF+LL FADYGFNKSH+A+Y ++++QTA++K HY Sbjct: 704 LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+A +T MD +KI + + Q I+I+PP +N+ F + I + LAA++ Sbjct: 764 PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG + + PF SL DFC+RVD + LN+R +ESL+ GA D G R LL Sbjct: 824 NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRTLNKRAIESLIKCGAFDSLGIDRNHLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961 SL+ A +++ + +F + +I + + R E+ GF Sbjct: 884 ASLNAAVTDAARRQRDLLSGQIGLFGDDAMAEVQQIGDFDDVPLCTPRERLTWEKEATGF 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHPL+ Y+ L + G + +R+ ++ S ++ T+KG + + Sbjct: 944 YITGHPLEDYQETLSHLQPIGQIAAAVQRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003 Query: 1022 EPAKEYEANFFP 1033 + E FP Sbjct: 1004 DFTGTLEVTVFP 1015 >gi|124514840|gb|EAY56352.1| DNA polymerase III, alpha subunit [Leptospirillum rubarum] Length = 1201 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 414/1045 (39%), Positives = 610/1045 (58%), Gaps = 21/1045 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA ++ ++ K A+ PAIA+TD NLF A+EF Q A Sbjct: 1 MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIGC++ I + +Q K ++LL GY+ L+++ Sbjct: 61 HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 VS +L + RI L L EGLI L+G G I + A F+ Sbjct: 121 VSLSHL-EGFYYRPRIDLELLSR-HHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178 Query: 176 KLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG + + +Q + D+ +++ L+ +PLVATN+ +L ED HD+L+ Sbjct: 179 EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + R R + + YLK EMV F +LPEA+ENT+ IA R + + + Sbjct: 239 LQTGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P + E + GL+ R + + A Y +RL+ E+ VI +M Sbjct: 299 PSYRLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKA-LYLERLEREIQVIQKMG 357 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + GYFLIV DFI+ A++ IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R Sbjct: 358 YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V Sbjct: 418 VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K+IPN + + ++ R DP ++ L +S+KLEG+ RH+S HAAG+ Sbjct: 478 DRVAKMIPNSLDMTLEKA-LEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI PL + VP+ R + VTQF +EK GL+KFDFLGL TLTL+Q + + + Sbjct: 537 VISREPLLEHVPLMRGA-NGEIVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAH 595 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 IP DD TY LL+ TLGIFQLES GM + MQP+ ED+IAL++LYRP Sbjct: 596 TPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GPI++ + + RK +I P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA Sbjct: 656 GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM K +++F+ GA + G K A ++FEL+A FA YGFNKSH+AAYA Sbjct: 716 DLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQTA++K HYP+E AA +T +D+ EKI F A+ I+++ P +N DF + Sbjct: 776 LISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +RI + L A+K VG I+EA A+ PF DF R+ KK+NRRV+E+L+ A Sbjct: 836 LPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRRVIEALIRA 895 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA G R ++SLD++ +A+ + + + +++F+ ++G S L + + Sbjct: 896 GAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPLREVPEWDE 955 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ LGFY + HP+ Y +L K+ + + G +R+ A+V + ++ K Sbjct: 956 RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAVVSALREVK 1015 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG ++ +T + EA FP Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040 >gi|300853524|ref|YP_003778508.1| DNA polymerase III subunit alpha [Clostridium ljungdahlii DSM 13528] gi|300433639|gb|ADK13406.1| DNA polymerase III, alpha subunit [Clostridium ljungdahlii DSM 13528] Length = 1158 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 383/1059 (36%), Positives = 594/1059 (56%), Gaps = 50/1059 (4%) Query: 5 LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++K +V L H+ YSLL+ + + ++ + ++AITD ++ +EF ++A Sbjct: 1 MDKGKHRWVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEAR 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A GI+PIIGC++ + D N GK +VLLV EGYQ L+++VS + Sbjct: 61 AQGIKPIIGCEIYVSQGDMTIKQNNGKN---ENYHLVLLVKNEEGYQNLMKIVSTASIKG 117 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R+ ++L + +EGLI L+ SG + + AE+ L +K F D Y Sbjct: 118 -FYYKPRVDHNYL-KNHSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFY 175 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H + Q++ ++ +PLVATN+ ++ +EDY AHD+L+ + V + Sbjct: 176 LEIQYHGIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDE 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R R + + YLK+ EM +FS++PE+LENT++IA +C+F + H LP+F E Sbjct: 236 ENRMRYPSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDT 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D +++ GL + + RL++EL +I +M + YFLIV Sbjct: 296 DPY----EYMKDLCYKGLYK-------RYNDVTDELKSRLEYELGIIKKMGYVDYFLIVW 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A+KN I GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D D Sbjct: 345 DFIRFARKNGIMTGPGRGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG + V+QIITFG++ AK +RDVGRA+ Y +VDR+ K+IP+ Sbjct: 405 FCYERRGEVIDYVVEKYGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPS 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + +A+ + F+EA ++ L++I++ LEGL RH STHAAG+VI PL Sbjct: 465 IPNITID-KALDMNPEFKEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVN 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+ ++ D VTQF M +E+ GL+K DFLGL+TLT+L+ +++ + + +G+++DL Sbjct: 524 YVPLQKN--EDNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDT 581 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +DD Y+++ T+G+FQLES G ++ ++PD +EDIIA +SLYRPGP+ I Sbjct: 582 IDYDDKAVYNMIGEGKTVGVFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPK 641 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN E I + P ++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK Sbjct: 642 YIKNKNNPEGIEYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKK 701 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M++++ F+ G +NGIS+ IA +IF+ + FA Y FNKSHAAA Sbjct: 702 KHHVMEEERHNFVYGIVDEKGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAA 761 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV++++TA++ +YP EF AA + + EK+ + + A+ I+IMPPS+N C F Sbjct: 762 YAVVAFRTAYLMYYYPTEFTAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKF 821 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I + L+AIK VG I+ + F + DFC+ +D +N+RV+ESL+ Sbjct: 822 TVEDGNIRFGLSAIKNVGENVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIK 881 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA DCFG R QL+ + + K ++F+ + + S +I Sbjct: 882 AGAFDCFGVLRSQLIAVHEKVIDSVINSRKKNIEGQVSLFSQIEDS-SVRIKYPSIEEFK 940 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------------RGNN 994 E+ + G Y SGHPLD Y L + V G+ Sbjct: 941 KLDMLAMEKEMTGLYLSGHPLDEYARTLELQADTKISDIVGRKTLEDNFVEEAKVNDGDR 1000 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + ++ +K T+ + + + E FP Sbjct: 1001 VIVGGILSEVSKKITKNNDMMAFAKLEDLYGIMEIIVFP 1039 >gi|160878493|ref|YP_001557461.1| DNA polymerase III DnaE [Clostridium phytofermentans ISDg] gi|160427159|gb|ABX40722.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1186 Score = 807 bits (2084), Expect = 0.0, Method: Composition-based stats. Identities = 373/1077 (34%), Positives = 586/1077 (54%), Gaps = 66/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ +SLL+G+ + + + A+AITD ++ ++F + A GI+P Sbjct: 2 SFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + +G +VLL GY LI++VSR + + Sbjct: 62 IIGCEVYVAPNSRFDK--EGSASEERYHHLVLLAENDIGYHNLIKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E +EG+I L+ +G + N + A+ L +++FG ++ LQ Sbjct: 119 RVDHELLKEY-SEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++++ +PLVATN+ + + D AHD+L+ + V+ +DR R Sbjct: 178 HGYPEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRMR 237 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + EM +F +AL+NT EIA+RC+ ++ LP++ + Sbjct: 238 YAGGQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSPG 297 Query: 307 -----------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 LR GL R + + RL++ Sbjct: 298 SGSTDDEGDISASQNISTNTDILAREYLRKLCEEGLVRRYKD-------PSTELWDRLNY 350 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL I M F YFLIV DFI++AK N+I VGPGRGS AGSV +Y L IT+IDP+++SLL Sbjct: 351 ELETIENMGFVDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLL 410 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R++MPD DIDFC +RR EVI YV +KYG +RV QI+TFG++ A+A +RDVGR Sbjct: 411 FERFLNPERLTMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGR 470 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 AL MPY+ VD + K+IP + + +A+ + ++ +DP V L+++S++LEGL R Sbjct: 471 ALDMPYASVDVVAKMIPTELGITIE-KALNINPDLKKLYESDPEVMHLIDMSKRLEGLPR 529 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 H S HAAG+VI + P + VP+ R D TQF M +E+ GL+K DFLGL+TLT++Q Sbjct: 530 HTSMHAAGVVISNAPADEYVPLSRSS-DDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQ 588 Query: 584 KSLDFLAQ--------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 ++ + Q +++ I ++D + L+++ T GIFQLESSGM+ ++ + Sbjct: 589 NAVLLVNQAKARLGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKEL 648 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +P +EDIIA +SLYRPGP+D I Y KN ++ I ++P+L T G I+YQEQV Sbjct: 649 KPQNLEDIIAGISLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQV 708 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAV 747 MQI + L+GYS +D++RRAM KK M+K+++ F+ G GI + +A Sbjct: 709 MQIVRELAGYSFGRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVAN 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +I++ + FA Y FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT +DN K+ ++ Sbjct: 769 HIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIY 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866 RQ I+++PP +N F V I Y L+AIKG+G ++ E + P+ +L+ Sbjct: 829 TCRQMGIKLLPPDINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLK 888 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF SR+ K++N+R +ES + +GA D +R QL+ + +K ++ Sbjct: 889 DFASRLSGKEVNKRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSL 948 Query: 927 FAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F + +++I + + E+ VLG Y SGHPL+ Y+ +L++ Sbjct: 949 FDLDGDAKVMNEEIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTA 1008 Query: 985 ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G+ + + M+ S+ K TR + + ++T + E FP Sbjct: 1009 DFIVEEETNTVKVADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFP 1065 >gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB] gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB] Length = 1164 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 416/1039 (40%), Positives = 610/1039 (58%), Gaps = 24/1039 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL VH+ YSLL+GA+ L ++++ + + PA+ +TD N+F ALEF +KA AAGI+P Sbjct: 3 AFVHLHVHTQYSLLDGAIRLTDLIETARSMEMPAVTMTDHGNMFGALEFYEKAKAAGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQ----GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 IIGC++ + + + G +VLL A GYQ L++LVS YL + Sbjct: 63 IIGCEVYLAPRSRHDRHGRAEGSGTGEEDRNYHLVLLAKDATGYQNLMKLVSAGYL-EGF 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI L + EGLI L+ G + N A + + G D Y+ Sbjct: 122 YYKPRIDKEILLQ-HHEGLIGLSSCLKGEVATLLSRNQESAARDAAREYAGILGPDHFYL 180 Query: 185 NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ + ++ +++ + LPLVATN+ +L + D AH++L+ + V + Sbjct: 181 ELQANGMPEQAKVNERLIVMGKELGLPLVATNDCHYLRKSDARAHEILLCIQTGKTVLDE 240 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + T Y K+ EM F+ +PEALEN+V IA RC L++ D Sbjct: 241 KRMKFQTDQLYFKSPEEMAREFAHVPEALENSVAIAERCRLELKLGDY----HFPVFPLD 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFL 358 + E++ A+ G RL + + ++ +Y +RL EL VI M F+ YFL Sbjct: 297 EGESVEDKFEKTALEGFRRRLRELEKRRSGFSEQDRGEYEERLRSELAVIREMGFAAYFL 356 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI +AK + IPVGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+R+SMPD Sbjct: 357 IVGDFINYAKSHGIPVGPGRGSAAGSLVAYAMNITDLDPIEHGLIFERFLNPERISMPDI 416 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC R+EV YV KYG RVAQI TFG++QA+A +RDVGRAL MPY++VDR+ KL Sbjct: 417 DVDFCIRGREEVFNYVSEKYGKNRVAQITTFGTMQARAVIRDVGRALAMPYNEVDRIAKL 476 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ + +A + R E + DP + L EI+ LEGL RHASTHAAG+V+ DRP Sbjct: 477 IPSSLGMTLE-KAFQAEPRLAEQQREDPQIRELFEIAFALEGLTRHASTHAAGVVMADRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVD 597 + + +P+Y + VTQ+ MK++E+AGLIKFDFLGL+ LT++ ++ + + ++D Sbjct: 536 IVEYMPLYLG-QDGEVVTQYPMKYVERAGLIKFDFLGLRNLTVIDDAVRLIRETHGLELD 594 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + +P DD +TY LL+ T G+FQLESSGMR L ++P+ DI+ALV+LYRPGP+++ Sbjct: 595 MLALPLDDRDTYALLSRADTTGVFQLESSGMRNILARLKPENFADIVALVALYRPGPLES 654 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V Y K+G+ +I ++ P+L+ T GVI+YQEQVM+IA +++ Y+L EADVLRR Sbjct: 655 GMVELYIQGKHGQIEITYDPEILRPILEPTYGVILYQEQVMKIASVMASYTLGEADVLRR 714 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M Q+ RF+ G+ KNGI A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 715 AMGKKNAEAMRDQRARFVEGSRKNGIPLAKANHIFDLMEKFAGYGFNKSHSAAYALVAYQ 774 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++KTHY VEF+AA + + + +++ + + R+ I I+PP VN DF V +I Sbjct: 775 TAYLKTHYLVEFMAALLNSFLSSSDQVVRLISECREKGIDILPPDVNASSRDFTVVGGKI 834 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L A+K VG I+ PF S+ DFC RVD++++NRRVLE LV GA D Sbjct: 835 RFGLGAVKNVGEAAIEVILNTRVERGPFKSIHDFCLRVDTQRVNRRVLEQLVKCGAFDSI 894 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFE 953 R ++ +LD+ AQ V+++R + N+F K T + L + + + Sbjct: 895 HSCRAGVMAALDDALDKAQAVQRDRQSGQINMFDLLKPRTKAGASALPEVPEWDGRQTLQ 954 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY SGHPLD Y + ++ + G + L M+ ++ T+KG Sbjct: 955 FEKEALGFYISGHPLDSYAAQISQLCTADTQAVKERKEGAEVILCGMISIVKELTTKKGD 1014 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 R+ ++ + E F Sbjct: 1015 RMAFLAIEDKEGVLEVVAF 1033 >gi|212704482|ref|ZP_03312610.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098] gi|212672049|gb|EEB32532.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098] Length = 1157 Score = 807 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 418/1038 (40%), Positives = 614/1038 (59%), Gaps = 25/1038 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ + ++ + PA AITD NLF A +F GI+ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRVKDLCSRAKDFGMPACAITDHGNLFGAAKFFLTCKDFGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + K + + ++LL EGY L++LVSR YL + Sbjct: 62 PIIGCEVYVCHDHLDKTSELARKRN----HLILLSENIEGYHNLVKLVSRSYL-EGFHYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + L++ +EGLI L+ +G I RA A + ++ DR Y+ LQ Sbjct: 117 PRVDKAMLRQY-SEGLICLSACIAGEIPRALNAGDMDGAIALAREYADIYPDRFYLELQS 175 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++A +LP+VATN+ +L+ +D +AH+VL+ + T + R R Sbjct: 176 NSLPEQEIANKGLLEIADHLKLPIVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMR 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T D Y K+ EM ++F LP++L NT EIA RC+ L + P + E + Sbjct: 236 FGTHDLYYKSGEEMEAVFGHLPQSLSNTAEIAERCNVELDMGHHYFPVYKLPEGASL--- 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++E R A GLE RL + + Q YR RL +EL VI M F GYFLIV +FI W Sbjct: 293 -DSEFRRLAEEGLERRLEKHPNRANINPQAYRDRLQYELKVILEMGFPGYFLIVQEFINW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ R Sbjct: 352 AKDHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNAERVSLPDIDVDFCERR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI+++ + YG + VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P+D Sbjct: 412 RTEVIQHMVDTYGKDSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPDDLKMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + DP V +LL+ +++LEGL RHASTHAAG+V+ RP+ + +P+Y Sbjct: 472 I-NKALEAEPDLQNLYDTDPQVKKLLDTARRLEGLSRHASTHAAGLVVSPRPMDEFLPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 R + VTQF+ EK+GL+KFDFLGLKT+TL+Q +LD Q DL +P D Sbjct: 531 TGKRGE-LVTQFDGPMTEKSGLVKFDFLGLKTMTLIQDTLDNITLQGKTPPDLDNLPLTD 589 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 TY L T GIFQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + Sbjct: 590 AATYDLYARGDTDGIFQVESSGMRQYLRMLKPSCFEDVIAMLALYRPGPLGSGMVDEFIK 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ +V H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E Sbjct: 650 RKHGQVPVVYPHESLSDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKPE 709 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M K++ +F+ GA KNG+ K A IF+L+ KFA+YGFNKSH+AAYA ISY TA++K H+ Sbjct: 710 AMAKERVKFVEGAQKNGVDKAKADEIFDLMEKFAEYGFNKSHSAAYAQISYFTAYLKVHH 769 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 VEF+AA +T EM N EK+ K+ + I ++ PSVN F + ++ + L IK Sbjct: 770 TVEFMAALLTSEMSNQEKLLKYISCCKDMGIDVVQPSVNASQRSFSAREGKVVFGLGGIK 829 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG + IM+A D + SL D C RVD +K+ +RVLE+L+ GA DCFG SR LL Sbjct: 830 NVGDSAITEIMDARKDGEYVSLFDMCCRVDLRKVTKRVLEALIKGGACDCFGVSRAALLA 889 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------KITLEKFSVENSSVRFENEQ 956 +LD + AQ K + + ++ A + + R +NE+ Sbjct: 890 ALDTVVTRAQKKAKEKNSNQISLLAMAPQVEAKPQPGIGFDCPESGIPEMDEDQRLKNEK 949 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015 LGF+ + HPL + +R++ + E++ + A +VVS ++ T+ KG R+ Sbjct: 950 EALGFFLTSHPLQPFSREMRRLRLTTLEDARDLYPKAELSTAVLVVSLKEVITKSKGERM 1009 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +V + E FFP Sbjct: 1010 AFVGVEDLTGHAEVTFFP 1027 >gi|320354498|ref|YP_004195837.1| DNA polymerase III subunit alpha [Desulfobulbus propionicus DSM 2032] gi|320123000|gb|ADW18546.1| DNA polymerase III, alpha subunit [Desulfobulbus propionicus DSM 2032] Length = 1173 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 424/1044 (40%), Positives = 618/1044 (59%), Gaps = 30/1044 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YS+L+GA+ +++++D A+A+TD ++ ALEF +KA Sbjct: 1 MPTP--FIHLHVHSQYSMLDGAIRVSDLIDTAKEFGMEAVALTDHGAMYGALEFYEKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++GC+ + +V L GY L++L S Sbjct: 59 AGIKPLVGCEFYLAENG----MEIHDRSAGHNFHLVALAMNEAGYGNLMKLASLAQTK-G 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L EGLI+LT G I N A R L +K+FGDRLY+ Sbjct: 114 FYYRPRIDRQTLYA-HQEGLIVLTACLKGEIPWRLTHNDENRARARALELQKVFGDRLYL 172 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q + ++ ++ LA + LVATN+ +L++E+ AH+VL+ + ++ Sbjct: 173 EIQENGLPEQTIANQGLMALAKDLNIKLVATNDCHYLTKEESYAHEVLLCIQTGKTINDP 232 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R + Y K+ EM + F+ PEA+ NT+E+A RC+ L P F KE Sbjct: 233 NRFRFNTNELYFKSGDEMAAQFAYCPEAISNTLEVAERCNLELSFKEHFFPIFPIKE--- 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E G + + + + YR RL++E++VI M F+GYFLI Sbjct: 290 -NETLETVFSQACWDGFQQRLDHMREMGPVSAETEKTYRDRLEYEIDVIQEMGFAGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAKK IPVGPGRGSGAGS+ AY + ITDIDP+ + LLFERFLN +R+SMPDFD Sbjct: 349 VADFINWAKKQKIPVGPGRGSGAGSLAAYCMAITDIDPIPYGLLFERFLNVERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +DFC++RRDEVI YV+ +Y G + VAQI+ +GS++A+A LRDVGR L +P VDR+ KL Sbjct: 409 VDFCKERRDEVIDYVRQRYGGDDYVAQIVAYGSMKARAVLRDVGRVLDIPLPVVDRIAKL 468 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P + + +AI + R REA D V LL I+Q LEGL RH STHAAG+VI +P Sbjct: 469 VPEELKITLK-KAIEKEPRLREAMKDDE-VRELLTIAQTLEGLARHKSTHAAGVVISPKP 526 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 + + +P+ + +TQ++MK+ EK GLIKFDFLGLKTLT++ ++L +A +VD Sbjct: 527 MVEYLPV-CIGPNKEILTQYDMKYTEKTGLIKFDFLGLKTLTVIDRALKLIAYDVGKEVD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD +TY+LL +LG+FQLES GMR+ L MQP+ D+IALV+LYRPGP+D+ Sbjct: 586 LRKIPMDDPKTYNLLCRGDSLGVFQLESDGMRELLIKMQPEQFTDLIALVALYRPGPLDS 645 Query: 658 IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + K+G+ P I +L+ET GVI+YQEQVM+I+ +L+GYSL +AD+LRR Sbjct: 646 GMVDTFVETKHGRRPADYPLPQIKSVLQETYGVIVYQEQVMKISNILAGYSLGDADILRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKKI E M+K++ +F++GA N I + A IF+L+AKFA YGFNKSH+AAYA+++YQ Sbjct: 706 AMGKKIPEVMEKERGKFMAGAKVNNIPEDKATYIFDLMAKFAGYGFNKSHSAAYALVAYQ 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYP +FLAA ++ + DN +K+ K+ + RQ I+++PP +N DF V ++R+ Sbjct: 766 TAYLKAHYPAQFLAALLSCDYDNTDKVVKYINECRQNKIEVLPPDINESFNDFTVINDRV 825 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + LAA+K VG I+ A P+ SL DFCSRVDS K+NR+V+ESL+ AGA D Sbjct: 826 RFGLAAVKNVGGAALDSILAEREAGGPYRSLSDFCSRVDSSKVNRKVIESLIKAGAFDSM 885 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLE-KFSVENSS 949 R Q + LD A+ +++R + N+FA K + ++ L Sbjct: 886 SGRRAQYMAMLDQCLDRAKAAQRDRMSGQMNLFAIGQPASKQAEATEVELPADVEEWPEL 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 R E+ +GF+ +GHPL+ LR+ G +R+ ++ S ++ K+ Sbjct: 946 ERLAAEKETVGFFLTGHPLEGVMEDLRRAVDTDIAGVEKLREGQAVRIGGLIASYKEHKS 1005 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG R+ + T + + E FP Sbjct: 1006 KKGDRMAFTTLEDMSASIEVIVFP 1029 >gi|226310964|ref|YP_002770858.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] gi|226093912|dbj|BAH42354.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599] Length = 1142 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 386/1029 (37%), Positives = 605/1029 (58%), Gaps = 24/1029 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA ++ ++ + + A+A+TD NL+ A+ F + AGI+P Sbjct: 3 SFVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + + P +++L GY+ L+ L + Sbjct: 63 IIGMELYVIEGNLQDRVRNA----PPPSHLIVLAENETGYRNLLRLATIANTDGN-YILP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L + T+GLI L+G G + + + A++ L ++++FG+ Y+ L Sbjct: 118 RLNKEVLAK-HTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELAD 176 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R +++V+L+ +PL+ATNN ++ ED++ HD+L+A+ + +++R R Sbjct: 177 HGLEVERRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFR 236 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T +YLK+ EM ++F+ P+AL NTV +A RC L A ILP F E D Sbjct: 237 YETDQYYLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQD---- 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR G G + + RLD EL +I F+ YFLIV DF+++ Sbjct: 293 STQYLRELCEKGCLE-------RYGEITPEAQARLDHELAIITGTGFTDYFLIVWDFMRY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A +N IP GPGRGS AGS+ AY L IT++DPLRF LLFERFLNP+R++MPD DIDF +R Sbjct: 346 AHENGIPTGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYGH+RVAQIITFG++ A+AA+RDVGRAL + VDR+ K+IP P Sbjct: 406 RDEVIHYVASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + + + +L+E ++ +EGL RHASTHAAG+VI PL+ VP+ Sbjct: 466 IERA-MQINPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQ 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 L +TQ+ M+ +E+ GL+K DFLGL+ LT++Q++L L ++G+ +DL +P DD Sbjct: 525 TG-NEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGISLDLDKLPTDDE 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T+ +L+ T GIFQLESSGMR L ++P ++DIIA+++LYRPGP++ I Y K+ Sbjct: 584 KTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPMEIIPQYIAAKH 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G K+ HP+++P+L+ET G +IYQEQ+MQI+ L+G+SL EAD+LRRA+GKK +E + Sbjct: 644 GTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKRELLA 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+E+F++G + G + +++L+ +FADYGFNK+H+ AYA+I+YQ A++K YP+ Sbjct: 704 EQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKATYPLA 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AA ++L + + +I ++ ++AR+ + ++ P VN F V + I + LAA+K VG Sbjct: 764 FMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDAIRFGLAAVKNVG 823 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I++ +P+ + DFC+RVD++ +NRRV+ESL GALD R QLL LD Sbjct: 824 YGAIESIVKERKGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQLLLLLD 883 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVLGFYFS 964 A R N+FA E+ + + + + + + E+ ++G Y S Sbjct: 884 EAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDLIGVYIS 943 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 GHPLD + + + + R +++ M+ ++ +T+KG + ++T + Sbjct: 944 GHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAFITLEDKT 1003 Query: 1025 KEYEANFFP 1033 E FP Sbjct: 1004 APVELVVFP 1012 >gi|242280805|ref|YP_002992934.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638] gi|242123699|gb|ACS81395.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638] Length = 1175 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 396/1049 (37%), Positives = 598/1049 (57%), Gaps = 33/1049 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL VH+ YSLL+GA+ + ++ + PA+AITD ++F A+ F A GI+ Sbjct: 2 SEFVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDMGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + D + +VLL +GY+ +I+L S +L + Sbjct: 62 PIIGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFL-EGFHYK 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + +EG+I L+ +G + RA + T++ +F Y+ +Q Sbjct: 121 PRVSKYLLNKY-SEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEVQA 179 Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++ + A LPLVATN+ +L++EDYEAHD+L+ + T V + R R Sbjct: 180 NGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKRFR 239 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T Y K + E F+ +PEA+ NT +IA C+ +++ P + E I Sbjct: 240 MGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTI--- 296 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E E GL+ R+ Y +RLD+EL VI M F YFLIV DFI W Sbjct: 297 -ETEFVKLCKEGLQKRIEN--APYEIDEAKYWERLDYELGVINEMGFPAYFLIVQDFINW 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGS AGS+ A+AL IT++DP+ + LLFERFLN +R+SMPD D+DFC+ R Sbjct: 354 AKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCERR 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP--- 483 R EV++Y KYG + VAQI T+G+++ KA ++DVGRA+ M +S+ D + KL+P+DP Sbjct: 414 RLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAVI 473 Query: 484 --------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 A A+ DP + +L++I+ +LEG+ RHASTHAAG+VI Sbjct: 474 AQGLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVVIS 533 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 D+P++ +P+Y+ + VTQ++MK +EK GLIKFDFLGL+T+T+++ LD + Q Sbjct: 534 DKPMTDYLPLYKG-KKGEIVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRLQGKE 592 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 DL + DD +T+ + T G+FQ+ESSGMR+ L ++P C EDIIA+++LYRPGP Sbjct: 593 APDLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLALYRPGP 652 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + +V + RK+G+ ++ + P ++P LK T GVI+YQEQVM A ++ YSL E D+ Sbjct: 653 LGSGMVDEFIKRKHGEIEVTYLWPTLEPSLKPTYGVIVYQEQVMGAAMTIANYSLGEGDL 712 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKKI EEM K + RF+ GA +N I + A +IF+L+ +FA YGFNKSH+AAYA+I Sbjct: 713 LRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFNKSHSAAYALI 772 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SY TA++K H+PVEF+AA M+ EM+N EKI + R ++ + P +N F V + Sbjct: 773 SYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDINLGVARFSVYE 832 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y +A IK VG I+E + PF DF +RV+ +++ +RV+E L+ AGA Sbjct: 833 GDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKRVIEYLIRAGAF 892 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE------KFSV 945 D G +R L+ SLD Y Q K + + N+ G + Sbjct: 893 DSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPAVVSFEEFNMPE 952 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E+ LGFY + HPL Y+ + ++G++ E I+L A++ + Sbjct: 953 MDDKEMQRLEKEALGFYLTCHPLLSYRNEMSRLGLQTIENCPNLAHEATIKLGAIITGYK 1012 Query: 1006 QKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + T+K G ++ + T + E FP Sbjct: 1013 EIITKKSGKKMAFATIEDMTGSGELIIFP 1041 >gi|313906491|ref|ZP_07839825.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] gi|313468681|gb|EFR64049.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6] Length = 1157 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 369/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+G+ + + + ++ A AITD ++ + F ++ AAGI+P Sbjct: 2 SFVHLHTHTEYSLLDGSNKIKDYVARVKELGMNAAAITDHGVMYGCIAFYKECLAAGIRP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + ++LL EGY L+++VSR + + Sbjct: 62 ILGCEVYVAPGSRFQK--EAGNSEERYYHLILLAENNEGYHNLLKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L L+E EG+I L+ +G + N + + L ++++FG ++ LQ Sbjct: 119 RVDLEVLREYH-EGIICLSACLAGEVATYLAKNMYEEGLQAALRYQEIFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q+++++ + LV TN+ + ED +AHD+L+ + VS ++R R Sbjct: 178 HGIPQQQVVNPQLLRMSEETGIELVCTNDCHYTRAEDADAHDILLCIQTGKKVSDENRLR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM ++F +ALENT +IA RC+ ++ H LP++ E Sbjct: 238 YEGGQYYVKSEEEMAALFPYAKQALENTQKIADRCNVEIRFHELKLPKYEVPEG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ G+ + R+RLD+EL+VI M + YFLIV D+I + Sbjct: 294 SWTYLQKICEDGIRKL-------YDPVTDEIRERLDYELDVIRTMGYVDYFLIVWDYIHF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK++ IPVGPGRGS AGS+ +YA+ IT++DPL++SLLFERFLNP+R+SMPD D+DF +R Sbjct: 347 AKEHGIPVGPGRGSAAGSIVSYAMGITELDPLKYSLLFERFLNPERVSMPDIDVDFGFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG++ A+ A+RDVGR L +PY+ D K+IP + Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTMAARNAIRDVGRVLDLPYALCDSTAKMIPQELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++ AD + L+++++KLEGL RH S HAAG+VI + + + VP+ Sbjct: 467 ID-KALKMNPELKKEYEADDQIRYLIDMARKLEGLPRHTSMHAAGVVISSKEVDEFVPLQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 TQ+NM +E+ GL+K DFLGL+TLT++Q ++ V +D+ I ++D Sbjct: 526 TAA-DGTVTTQYNMTELEELGLLKMDFLGLRTLTVIQDAVSMAQRNHNVSIDMMKIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ++ G+FQLES+GM+ ++ ++P +EDI+A V+LYRPGP+D I Y K Sbjct: 585 PAVMKMIGEGKDEGVFQLESAGMKSFMKELKPSSLEDIVAGVALYRPGPMDFIPQYIRGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +++ P + +L+ T G I+YQEQVMQI + L+GYS +D+LRRAM KK M Sbjct: 645 KHPDEVQYDCPQLKAILEPTYGCIVYQEQVMQIVRELAGYSYGGSDLLRRAMSKKKMHVM 704 Query: 726 DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++++ F I G +NGI + +A I++ + FA Y FNKSHAAAYA++S+QTA Sbjct: 705 EEERRNFVYGNEERGIPGCIRNGIDEKVANKIYDDMIDFAKYAFNKSHAAAYALVSFQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K ++ R I+I+PP++N F V D +I Y Sbjct: 765 WLKCYYPVEFMAALMTSVIDNTAKCAEYMMHTRALGIEILPPNINKSEGTFSVEDGKIRY 824 Query: 838 SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +L+AIKGVG I +E + F +L DFC R+ +++N+R LE+ + AGA DC G Sbjct: 825 ALSAIKGVGRPVIDAISLERDQNGSFKNLGDFCRRLTGREVNKRTLENFIKAGAFDCLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q +Q + A +KN ++F E+ +I L + Sbjct: 885 TRRQFMQVYTLVADQAVKEKKNNATGQLSLFDLMGEEDRQQYEIRLPDVGEFDKEEILSF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQ 1006 E+ V G Y SGHPL+ + RK + GN + ++V K Sbjct: 945 EKEVTGIYISGHPLESDEKKWRKNITCVSADFALPEEGNLPKLKDGNRETIGGIIVDKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T K + ++T + E FP Sbjct: 1005 KYTSKNQTMAFLTIEDLVGSVEVIVFP 1031 >gi|310641197|ref|YP_003945955.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246147|gb|ADO55714.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1221 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 402/1030 (39%), Positives = 600/1030 (58%), Gaps = 16/1030 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA ++ + +A A+A+TD ++ A+ F + GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ + + +G + ++LL GYQ L++L S +L + Sbjct: 62 PIIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L EG+I L+ G + + A + ++ +FGD Y+ LQ Sbjct: 118 PRIDMDALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R Q++ LA ++PLVATN+ +L+E D + DVL+ + V ++R R Sbjct: 177 HGLSEQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLR 236 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK++ EM +F + EA+ NTV IA +C L+ ILP + Sbjct: 237 IPTRQLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY---RPLPEDMT 293 Query: 307 EENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR+ V GLE R + + + QRL++ELN I M FS YFLIV DFI Sbjct: 294 SSSYLRSLCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A K+ I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF + Sbjct: 354 FAHKHKITTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+ KLIP Sbjct: 414 RRDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + A+ + P LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 474 NI-RHALEITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFD 604 + +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + Q G D S +P D Sbjct: 533 Q-EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDD 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY LL T G+FQLES+G+R+ L+ ++P EDII++V+LYRPGP+ I + Sbjct: 592 DPHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQA 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ +I HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D ++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843 V+F+A+ +T M + K+ ++ + R+ +I ++PP VN V F I + LAAIK Sbjct: 772 VQFMASMLTAVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGDIRFGLAAIK 831 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VGT I+ ++PFDSL DFC RVD + N+RV+ESL+ AGA D R QLL Sbjct: 832 NVGTQAMESILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLA 891 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD A K R + ++F + D I ++S + E E+ +LG Y Sbjct: 892 MLDETVDAAAKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPPFSTSQQLELERELLGLYL 950 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHPLD ++ +L E I A MVVS + T++G + ++ + Sbjct: 951 SGHPLDDFESLLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKAMAFIELEDQ 1010 Query: 1024 AKEYEANFFP 1033 + E FP Sbjct: 1011 IERCEVVLFP 1020 >gi|253580959|ref|ZP_04858221.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847801|gb|EES75769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1155 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 369/1046 (35%), Positives = 576/1046 (55%), Gaps = 41/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A A GI PI Sbjct: 3 FTHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMYGVIDFYRAARAEGINPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + +VLL +GY L+++VS+ + + R Sbjct: 63 LGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYANLMKIVSKGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ L+E EG+I L+ +G + R + A+ L ++ +FG ++ LQ H Sbjct: 120 VDLAVLKEYH-EGIIALSACLAGEVARYLQRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R +++++ + LVATN+ + ED + HD+L+ + + ++ +DR R Sbjct: 179 GIPAQRLVNQELLRMHEETGIDLVATNDVHYTRAEDADPHDILLCLQTNKKLADEDRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F EALENT +IA+RC ++ LPRF + Sbjct: 239 EGGQYYVKSPEEMAELFPYALEALENTHKIAQRCHVEIEFGVTKLPRFDVPDG----LTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GLE R ++ + RL++EL+ I M + YFLIV DFI++A Sbjct: 295 WEYLNKLCFEGLEERYQP-------VTEELKARLNYELSTIKNMGYVDYFLIVWDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 348 RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV+ KYG + V QI+TFG+L A+ +RDVGR L MPY+QVD + K+IP + + Sbjct: 408 QEVIEYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVLDMPYAQVDSIAKMIPQELNITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + ++A + L++++++LEGL RH S HAAG+VI + +S+ VP+ R Sbjct: 468 D-KALTMNPELKKAYEEQDEIHYLIDMARRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + D+ I +DD Sbjct: 527 AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKLIQKDAGVTLDMQKINYDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 586 KVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M+ Sbjct: 646 RPDTIRYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKASVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 706 KERQNFVYGNEAEGVPGCIANGIDEATANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT +D K+ ++ RQ I+I+PP VN F V + I Y Sbjct: 766 LKYYYPVEFMAALMTSVIDFPNKVAEYILVCRQMGIKILPPDVNCGMYGFSVDNGAIRYG 825 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK VG ++ + + SL+DF R +S ++N+R +E+ + AGALDC + Sbjct: 826 LSAIKSVGRPVIESLVREREENGQYRSLKDFMER-NSPQMNKRAVENFIKAGALDCLDGN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955 R Q + I +KN ++F E+ +I + E Sbjct: 885 RRQKMLVYQKISDSISQDKKNSLAGQMSLFDLVSEEDKKEFEIRMPDVEEFGKEELLGYE 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ ++ K + + G + + M+ K K Sbjct: 945 KEVLGIYLSGHPLENYRGMMEKTISAKTSDFQQDEETNLPKVMDGQKVIIGGMITDKTIK 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + ++T + E FP Sbjct: 1005 YTKNNKVMAFLTVEDLVGTVEVVVFP 1030 >gi|295110725|emb|CBL24678.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus obeum A2-162] Length = 1155 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 377/1046 (36%), Positives = 587/1046 (56%), Gaps = 41/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + +D++ + AITD ++ ++F + A AAGI PI Sbjct: 3 FTHLHVHTEYSLLDGSNKIKEYVDRVRELGMDSAAITDHGVMYGVIDFYRAARAAGINPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + +VLL +GY L+++VS+ + ++ R Sbjct: 63 LGCEVYVAPGSRFDR--EAGSGDDRYYHLVLLAENNQGYSNLMKIVSKGF-VEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + LS L++ EG+I L+ +G + R + A+K L ++ +FG ++ LQ H Sbjct: 120 VDLSLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKKAALRYQDIFGKGNFFLELQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q++++ + LVATN+ + ED + HDVL+ + ++ +DR R Sbjct: 179 GIPEQQNVNQQLLKMHRETGIELVATNDVHYTLAEDAQPHDVLLCLQTGKKLADEDRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F PEALENT +IA+RC ++ LP+F E Sbjct: 239 EGGQYYVKSPEEMERLFPYAPEALENTHKIAQRCHVEIEFGVTKLPKFGVPEG----YTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GLE R ++ ++RL++EL+ I M + YFLIV DFI++A Sbjct: 295 WEYLNELCFKGLEERYQP-------VTEELKERLNYELSTIRNMGYVDYFLIVWDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 348 RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV+ KYG + V QI+TFG+L A+ +RDVGR + +PY+QVD + K+IP + + Sbjct: 408 QEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + F++A + L++ +++LEGL RH S HAAG+VI + +S+ VP+ R Sbjct: 468 D-KALQMNPEFKKAYEEQKEIHDLIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 VTQF M +E+ GL+K DFLGL+TLT++Q ++ + Q D+ I ++D Sbjct: 527 AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLIEQDAGVKLDMQHIDYNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T + G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 586 KVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++ +LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M+ Sbjct: 646 RPDTIKYDCPQLESILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGIS+ A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 706 KERQNFVYGNEEEGVPGCIANGISEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAF 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT ++ K+ ++ Q RQ NI+I+PP VN F V + I Y Sbjct: 766 LKYYYPVEFMAALMTSVIEMPTKVAEYIQVCRQMNIKILPPDVNRGAYGFSVDNGAIRYG 825 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK VG ++E A+ + SL+DF R+ + +N+R +E+ + AGALDC + Sbjct: 826 LSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEGN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955 R Q + I +KN ++F ++ +I + + + E Sbjct: 885 RRQKMLVYGQIVDSIAQEKKNSFAGQMSLFDLVSDEEKKEYEIRMPDVEEYDKEMILAFE 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ I+ KM + G + + M+ K K Sbjct: 945 KDVLGIYLSGHPLERYRNIMEKMISAKTTDFQPDEESGIPKVYDGQKVIIGGMITEKTIK 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 TR + ++T + E FP Sbjct: 1005 YTRNNKVMAFLTVEDLLGTVEIVVFP 1030 >gi|260588911|ref|ZP_05854824.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583] gi|331083399|ref|ZP_08332511.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540690|gb|EEX21259.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583] gi|330404092|gb|EGG83640.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium 6_1_63FAA] Length = 1156 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 371/1046 (35%), Positives = 578/1046 (55%), Gaps = 40/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ +N + ++ + AITD +F ++F + A AAGI+PI Sbjct: 3 FAHLHVHTEYSLLDGSNKINEYVARVKELGMNSAAITDHGVMFGCIDFYRAAKAAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +VLL GY+ L+++VS+ + +D R Sbjct: 63 LGCEVYVAPGSRFDR--EIGQAEDRYYHLVLLAENNHGYENLMKIVSKAF-VDGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + LQE EG+I L+ +G + + + A+ L ++K+FG ++ LQ H Sbjct: 120 VDMDLLQEYH-EGIIALSACLAGEVAKNITRGMYEEAKSAALRYEKIFGKGNFFLELQDH 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R Q+++++ + LVATN+ + + D EAHD+L+ V ++S ++R R Sbjct: 179 GIPQQQRVNQQLLRMSQETGIALVATNDVHYTYDTDAEAHDILLCVQTRKLLSDENRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F +PEALENT +IA RC ++ LP+F Sbjct: 239 EGGQYYVKSPEEMAELFPYIPEALENTQKIADRCEVEIEFGVTKLPKFDVP----APYTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GL+ R + + +RL++EL VI M + YFLIV DFI++A Sbjct: 295 WEYLNKLCYDGLKERYSGDLT-------ELEKRLEYELGVIKTMGYVDYFLIVWDFIRFA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 348 RDHDIMVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+Q D + K+IP + + Sbjct: 408 QEVIDYVVEKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAQCDAIAKMIPEELNITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V +L+++S++LEGL RH S HAAG+VI + + + VP+ R Sbjct: 468 D-KALKMNPELKNLYTTDEMVKKLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVPLAR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 VTQF M +E+ GL+K DFLGL+TLT++QK++ +G+ +D+ + ++D Sbjct: 527 AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQKAVKLIEKNKGISLDMDHVDYNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y +L T G+FQLES+GM ++ ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 586 AVYDMLGAGKTEGVFQLESAGMTSFMKELKPESLEDVIAGISLYRPGPMDFIPQYIEGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I + P ++P+L T G I+YQEQVMQI + L GY+L +D++RRAM KK M+ Sbjct: 646 NPDSIHFLCPQLEPILSATYGCIVYQEQVMQIVRSLGGYTLGRSDLVRRAMSKKKAAVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G GIS+ IA I+E + FA Y FNKSHAAAYAV++YQTA+ Sbjct: 706 KERQNFVYGNEEEGVPGCVNRGISEEIANKIYEQMMDFAKYAFNKSHAAAYAVVAYQTAY 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K H+PVEF+AA MT +DN K+ + R+ I I+PP +N F V I Y Sbjct: 766 LKCHFPVEFMAALMTSVIDNPPKVADYILSCRRMGIAILPPDINKGDSTFSVDGGGIRYG 825 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+AIK +G I+ F SL DF R+ K +N++ +E+ + AGA D + Sbjct: 826 LSAIKSIGKPVIESIVAERNQRGDFTSLRDFIERMTGKDVNKKAIENFIKAGAFDELPGN 885 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955 R Q + I +KN ++F E+ + +I + + E Sbjct: 886 RRQKMMVYAQILDAIVQEKKNMMAGQMSLFDFVSEEEKTAYEIHMPDVEEYPKEAKLAFE 945 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ RK + + G + + M+ K K Sbjct: 946 KEVLGIYISGHPLEEYETCWRKNISAVTTDFMPDEESGQPKVRDGQQVIVGGMITEKTIK 1005 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + ++T + E FP Sbjct: 1006 YTKTNKVMAFLTLEDLLGTVEIVVFP 1031 >gi|227824700|ref|ZP_03989532.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226905199|gb|EEH91117.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 1156 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 371/1036 (35%), Positives = 588/1036 (56%), Gaps = 30/1036 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+GA + +++ PA+AITD ++ A+EF Q+ GI+PI Sbjct: 22 FVHLHTHTQFSLLDGACRIPDLVSYAKELGMPALAITDHGVMYGAIEFYQECVKQGIKPI 81 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I + + + + ++LL GYQ L++LVS ++ R Sbjct: 82 IGCEVYITSGSHTVKNMEAR---GKLYHLILLAENRTGYQNLMKLVSIG-QVEGFYYKPR 137 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I L++ EGLI L+ +G + R + AEK +L + +FG D Y+ +Q H Sbjct: 138 IDKQDLRKYH-EGLICLSACVAGEVARHIVRGEKETAEKVMLEYLDIFGRDHYYLEIQNH 196 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++ LA + + LVATN+ ++ ++D + D+L+ + + R R Sbjct: 197 GLPEEKAVADELHHLARKYNVKLVATNDLHYVHQDDAKGQDILLCIQTNARYLDPQRMRF 256 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +YLK+RSEM ++F D EAL+NT+EIA RC L+ +LP F E + Sbjct: 257 NNDSYYLKSRSEMEALFPDDAEALDNTLEIADRCDLTLEFGHLLLPEFPLPEGET---SM 313 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ V G + R + + ++R+D+EL +I +M +SGYFLIV DFI + Sbjct: 314 DAYLKKLCVKGFQERYPKDDGSA-------QKRMDYELGIIRQMGYSGYFLIVWDFINYC 366 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++IPVGPGRGS AGS+ AY ITDIDPL+++L+FERFLNP+R+SMPD D D C +R Sbjct: 367 RTHDIPVGPGRGSAAGSIVAYLTGITDIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 426 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 V+ Y+ +KYG VAQI+TFG+L AKAA++DVGR++++P + V ++ KLIPN P + Sbjct: 427 HLVVDYLASKYGESHVAQIVTFGTLAAKAAIKDVGRSMEVPLNVVGQVNKLIPNTPGTTL 486 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + ++ DPS+ +L++ + ++EG+ RH STHAAG+VI L+ VP+ Sbjct: 487 KSA-LEGSRDLQQLVQNDPSIAQLMDFAGRVEGMPRHTSTHAAGVVITPGELTNYVPLQI 545 Query: 548 DVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602 SD TQ++ E GL+K D LGL+TLT++ ++ + + D+ I Sbjct: 546 TSTSDDDHEYICTQYDKDCSEALGLLKMDLLGLRTLTVIDDTVKMIEKNQGIKLDIHHID 605 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 +D +T +L T +FQ+ES GM + ++ + P+ + D+I LV+LYRPGP+ + + Sbjct: 606 LEDPKTCQMLCAGDTAAVFQMESDGMTRLMKELGPESMADLIPLVALYRPGPLGSGMAED 665 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + ++GK +HPL++P++ +T GVI+YQEQVMQI +L G+SL EAD+LRRAMGKK Sbjct: 666 FIAGRHGKRTARVLHPLMEPIVADTYGVILYQEQVMQIVSVLGGFSLGEADILRRAMGKK 725 Query: 721 IKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + +D KE+F++ A ++ IS+ + IF LL FA YGFNKSH+AAYA+++YQTA++ Sbjct: 726 KAKLLDSMKEKFLAGAAREHQISRQLGEEIFALLQHFAGYGFNKSHSAAYALVAYQTAYL 785 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +YPVE++AA + + EK+ + R I+++PP +N+ F V + + + L Sbjct: 786 KANYPVEYMAAFLNSVITVAEKVSWYISVCRDMGIKVLPPDINSSEAAFSVDGDNVRFGL 845 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIK VG T I++ F DF SRVD K+N+RV+E+L+ +G++D FGY R Sbjct: 846 GAIKSVGETAVAVILKERERHGLFKDFFDFASRVDLTKVNKRVVENLIKSGSMDTFGYRR 905 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QLL +D A + +R ++F + + I + E+ + Sbjct: 906 RQLLAIMDRALDAAAQDQHDRMTGQLSLFGGDTRQSAAAIPIPDLPEIPKDEVLRLEKEL 965 Query: 959 LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GFY +GHPLD ++ +L M GI E G + + ++ + + T+KG R+ Sbjct: 966 IGFYVTGHPLDAFRKVLSSMTGIARCTE-EHYHDGERVTVGGLITGVRIRSTKKGERMAT 1024 Query: 1018 VTFSEPAKEYEANFFP 1033 + FP Sbjct: 1025 FMLEDLTGSIGVIAFP 1040 >gi|153815935|ref|ZP_01968603.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756] gi|317500700|ref|ZP_07958918.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|145846754|gb|EDK23672.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756] gi|316897894|gb|EFV19947.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] Length = 1157 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 386/1047 (36%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A + GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL EGY L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ + G+I L+ +G + R A+K L ++ +FG D Y+ LQ Sbjct: 119 RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ + LVATN+ + +D +AHD+L+ + ++ ++R R Sbjct: 178 HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F +ALENT +IA RC ++ LP++ + Sbjct: 238 YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GLE A + R+RLD+EL I M + YFLIV DFI++ Sbjct: 294 SWEYLRKLCYEGLEK-------RYAERADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + MPY+ VD + K+IP +P Sbjct: 407 RQEVIDYVVGKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V L+E++++LEGL RH+S HAAG+VI + + + VP+ Sbjct: 467 IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ V++ + +DD Sbjct: 526 RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES+GM+ ++ ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK EEM Sbjct: 645 DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++++ F I G KNGI + +A I++ + FA+Y FNKSHAAAYAV++YQTAW Sbjct: 705 RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ +RQ IQI+PP +N DF V + I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896 L+AIK VG R ++E P+ +LEDF +RV SK LN+R +E+L+ AGALD G Sbjct: 825 LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I + +K + ++F E+ +I + + + Sbjct: 885 TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ ++ R+M + G + M+V K Sbjct: 945 EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031 >gi|331089825|ref|ZP_08338718.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium 3_1_46FAA] gi|330403522|gb|EGG83080.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium 3_1_46FAA] Length = 1157 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 386/1047 (36%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A + GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL EGY L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ + G+I L+ +G + R A+K L ++ +FG D Y+ LQ Sbjct: 119 RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ + LVATN+ + +D +AHD+L+ + ++ ++R R Sbjct: 178 HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F +ALENT +IA RC ++ LP++ + Sbjct: 238 YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GLE A + R+RLD+EL I M + YFLIV DFI++ Sbjct: 294 SWEYLRKLCYEGLEK-------RYAERADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + MPY+ VD + K+IP +P Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V L+E++++LEGL RH+S HAAG+VI + + + VP+ Sbjct: 467 IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ V++ + +DD Sbjct: 526 RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES+GM+ ++ ++P+ +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK EEM Sbjct: 645 DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++++ F I G KNGI + +A I++ + FA+Y FNKSHAAAYAV++YQTAW Sbjct: 705 RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ +RQ IQI+PP +N DF V + I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896 L+AIK VG R ++E P+ +LEDF +RV SK LN+R +E+L+ AGALD G Sbjct: 825 LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I + +K + ++F E+ +I + + + Sbjct: 885 TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ ++ R+M + G + M+V K Sbjct: 945 EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031 >gi|291550544|emb|CBL26806.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus torques L2-14] Length = 1157 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 369/1047 (35%), Positives = 582/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ +SLL+G+ + + ++ + AITD ++ ++F ++A GI P Sbjct: 2 SFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL EGY L ++VS+ + ++ Sbjct: 62 ILGCEVYVAPNSRFDREITGG--DDRYYHLVLLAENEEGYANLTKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L++ +G+I L+ +G + R + A+K L ++++FG+ ++ LQ Sbjct: 119 RVDKELLRKYH-KGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+ +++ + LVATN+ + ED + HD+L+ + +S ++R R Sbjct: 178 HGIPEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM+ +F +ALENT +IA RC ++ LP++ + Sbjct: 238 YDGGQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ GLE G +++ ++RL +EL I +M + YFLIV DFI++ Sbjct: 294 SWEYLQKLCYEGLEK-------RYGDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGISVGPGRGSAAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++ D +V L++++++LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 467 ID-KALKMNPDLKKLYDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ +++++ I ++D Sbjct: 526 RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQ 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 KVLDYIGTGKTDGVFQLESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GYSL +D+LRRAM KK M+ Sbjct: 645 DSSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVME 704 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ FI G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTAW Sbjct: 705 KERKIFIYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++PVE++AA MT +DN K+ ++ RQ NI+I+PP +N +F V I Y Sbjct: 765 LKYYFPVEYMAALMTSVIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896 LAAIK +G + I+E + F +LEDF +R+ +K LN+R +E+L+ AGALD G Sbjct: 825 LAAIKSIGRPVIKAIVEDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFEN 954 +R Q + I + +KN +F ++ I + + Sbjct: 885 TRKQFMSIYVQIVDHVTQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ +K + G + M+ K Sbjct: 945 EKEVLGIYVSGHPLEAYEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KHTKTNQMMAFITVEDLLGTVEVVVFP 1031 >gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365] gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365] gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40] gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33] gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686] gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28] gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90] Length = 1163 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99] Length = 1163 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94] gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94] gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10] gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1] gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1] Length = 1163 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo] Length = 1190 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 41 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 101 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 161 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 220 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 279 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 280 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 340 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 400 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 460 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 520 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 580 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 640 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 700 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 760 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 820 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 880 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 940 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 998 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 999 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1059 LSDASGQFEAVLF 1071 >gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M] Length = 1178 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 29 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 88 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 89 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 148 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 149 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 207 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 208 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 267 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 268 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 327 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 328 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 387 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 388 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 447 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 448 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 507 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 508 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 567 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 568 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 627 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 628 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 687 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 688 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 747 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 748 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 807 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 808 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 867 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 868 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 927 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 928 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 986 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 987 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1046 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1047 LSDASGQFEAVLF 1059 >gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1] Length = 1163 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 591/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+I+ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDIALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915] Length = 1163 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026] Length = 1188 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 39 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 98 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 99 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 158 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 159 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 217 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 218 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 277 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 278 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 337 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 338 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 397 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 398 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 457 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 458 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 517 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 518 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 577 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLK LT+LQ ++ +A++G+ +DLS + Sbjct: 578 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKMLTVLQTAVKLVARKGIDIDLSHL 637 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 638 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 697 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 698 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 757 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 758 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 817 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 818 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 877 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 878 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 937 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 938 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 996 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 997 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1056 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1057 LSDASGQFEAVLF 1069 >gi|320529018|ref|ZP_08030110.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399] gi|320138648|gb|EFW30538.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399] Length = 1130 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 378/1032 (36%), Positives = 590/1032 (57%), Gaps = 26/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YSLL+GA + ++ + ++AITD ++ A+ F ++A A GI P Sbjct: 2 SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSVAITDHGVMYGAIAFYKEAMAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q + ++LL GY+ L+ LVS + + Sbjct: 62 IIGCEVYVAPQSRHERAEVDGVR---YYHLILLAENEIGYRNLVRLVSLANI-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ +G I R+ + ++ L + +FG D ++ LQ Sbjct: 118 RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + L+ H++ LVATN+ ++ ED E HD+L+ V ++ +R R Sbjct: 177 HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD+YLK+ +EM ++F D P A+ENT +IA RC LP + E + Sbjct: 237 FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEKF---AD 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR + + R RLD+EL VI M ++ YFLIV DFI + Sbjct: 294 DDAYLRTLCEE-------RLPERYSEITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 347 ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V + KL+P++ Sbjct: 407 RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + FR D SV R++++++K+EGL R+ S HAAG+VI PL+ VP++ Sbjct: 467 ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + VT+F+ +E GL+K DFLGL+TL++++ +L + G+ +D+ IP +D Sbjct: 526 --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + + + Sbjct: 584 DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +GK+++V +HPL+ P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 644 GLHGKKEVVYMHPLLAPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + QKE F++G + NGI +A +IF+LL FADYGFNKSH+A+Y ++++QTA++K HY Sbjct: 704 LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+A +T MD +KI + + Q I+I+PP +N+ F + I + LAA++ Sbjct: 764 PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG + + PF SL DFC+RVD + LN+R +ESL+ GA D G R LL Sbjct: 824 NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRILNKRAIESLIKCGAFDSLGIDRNHLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961 SL+ A +++ + +F E +I + + R E+ GF Sbjct: 884 ASLNAAVTDAARRQRDLLSGQIGLFGDEAMAEIQQIGDFDDVPLCTPRERLTWEKEATGF 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHPL+ + L + G + +R+ ++ S ++ T+KG + + Sbjct: 944 YITGHPLEDNQETLSHLQPIGQIAAAVRRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003 Query: 1022 EPAKEYEANFFP 1033 + E FP Sbjct: 1004 DFTGTLEVTVFP 1015 >gi|325972730|ref|YP_004248921.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy] gi|324027968|gb|ADY14727.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy] Length = 1155 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 408/1032 (39%), Positives = 607/1032 (58%), Gaps = 18/1032 (1%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + FVHL H+ +SLL+GA + + K + ++AITD N+F AL F A A Sbjct: 10 TQQSRFVHLHNHTDFSLLDGAAPIGRYMAKAKSLGMTSLAITDHGNMFGALRFYNAARDA 69 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC+ + + + G P ++LL +GY L+EL S Y Sbjct: 70 GIKPIIGCEFYCNPAGHTERPAPGG-RKPNQYHLILLAINEKGYHNLMELNSLSYTQG-F 127 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 RI L + EG+I L+ G I + + + A++R L F +F D R Y+ Sbjct: 128 YFKPRIDDELLVKY-NEGVICLSACLGGEILQHLLNDQYEKAKERALWFSSVFDDGRYYL 186 Query: 185 NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H D+ R + ++ QL+ +PLV TN+ ++ ++D A D+L+ V ++ + Sbjct: 187 EMQDHNLPDQKRTNPLLKQLSEETGIPLVCTNDIHYIEKDDANAQDLLLCVGTNSKKNDP 246 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R + Y+K+ +M SIFS PEALENT +IA RC+ + + P+LP F + Sbjct: 247 DRMRFPNQEFYMKSEEQMASIFSWCPEALENTGKIADRCNLEIHLPGPLLPDFEVPQGF- 305 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR+ + GL+ ++ +RLD+EL+VI +MKF GYFLIV D Sbjct: 306 --EGPAHYLRHLSHEGLKK-------RYSVVTEELTKRLDYELDVIIKMKFEGYFLIVMD 356 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +IQWAKK++IPVGPGRGSGAGS+ AY++ ITD+DP++++LLFERFLNP+R+SMPDFDIDF Sbjct: 357 YIQWAKKHDIPVGPGRGSGAGSLVAYSIDITDVDPIKYNLLFERFLNPERVSMPDFDIDF 416 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV YG ERVAQI TFG+L+AKA ++DV R L +P+ + + +CKLIP+D Sbjct: 417 CFERRQEVINYVTEHYGTERVAQIATFGTLKAKAVVKDVARVLDIPFDESNNICKLIPDD 476 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A + E L + +++LEGL RH STHAAG+VIG L Sbjct: 477 PKMTL-AKAFEQNKELVELEQKGGIYAELFDAARRLEGLNRHTSTHAAGVVIGKEELVNY 535 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD ++ TQ+ M IE+ GL+K DFLGLKTLTL++ + D + ++ K + I Sbjct: 536 VPLYRDAKTGAISTQYTMDLIEECGLVKMDFLGLKTLTLIKHTEDLIHKKDPKFTSTAID 595 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 D +T+ +L + +FQ ES GM+ L+ +P IED++AL +LYRPGP+ I + Sbjct: 596 EKDPKTFEMLCRGDSTAVFQFESQGMQNILKEAKPSNIEDLVALNALYRPGPMAYIPQFV 655 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 N K G++ I +P ++ LK T GVI+YQEQVM++AQ+++GYSL AD+LRR MGKK Sbjct: 656 NCKLGRQPITYANPELEEELKTTYGVIVYQEQVMKVAQIIAGYSLGGADILRRIMGKKKV 715 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 ++K+K +FI+GA G S+ A IFE+L FA YGFNKSHA AY+V++YQTA++K + Sbjct: 716 AALEKEKVKFIAGAKALGRSEQHAAEIFEMLEPFAGYGFNKSHAVAYSVVAYQTAFLKAN 775 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP EF AA++T EM + +K ++ Q A+ ++I+PPSVN F V + +I Y LA I Sbjct: 776 YPAEFWAANLTNEMGSPDKFSEYLQVAKDQGLEILPPSVNYSDKHFSVVNGKIVYGLAGI 835 Query: 843 KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG ++ E A P+ L DF +R+D+K +N ++LESL+ AGA D G +R L Sbjct: 836 KNVGEGVVELLVSEREAHGPYKDLLDFLTRLDAKAMNTKLLESLIKAGAFDTLGTNRPTL 895 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L++L + Y Q ++ ++F E + T++ + E E+ +LGF Sbjct: 896 LENLGDAITYVQKRKEATAFGQISLFDDETEASMETFTMKPAEDWKLPEKLEMEKGLLGF 955 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y SGHPLD + + + + AMV S + T+KG + ++ + Sbjct: 956 YISGHPLDAFSQAINQRVTANTAHLENVAFNRPTNIIAMVSSIRPFTTQKGGIMAFLQLT 1015 Query: 1022 EPAKEYEANFFP 1033 + ++A FP Sbjct: 1016 DRNATFDATLFP 1027 >gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330] gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330] Length = 1163 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 589/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA++K Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYIKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2] Length = 1163 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A R+ K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPKETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5] Length = 1157 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 536/1035 (51%), Positives = 712/1035 (68%), Gaps = 13/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL VHS+YSLL+G++ + AD QPA+A+TD +N+F ALEFS+K Sbjct: 1 MA-SPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPIIGC L +D D P IVLL T + Y+ L+ L SR +L Sbjct: 60 LGIQPIIGCALAVDFGDVDPAARNAAALAPAR--IVLLAPTEDSYRSLMRLNSRAFLEMP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +Q+ I WL++ GLI LTGG GPI +A ++A +R+ LFGDRLY+ Sbjct: 118 AQQTPHIKAEWLEQE-RTGLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYL 176 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R ES ++ +AY LPLVATN F + EDYE+HD L+ +A ++++ Sbjct: 177 ELQRHGLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAET 236 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--ECD 301 +R +TPDH K R+EM +F+DLPEAL +TVEIA+RC+F + PILP F Sbjct: 237 ERAHLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMA 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D +E EL+ +A GL RL +A+G +DYR RL +E++VI RM +SGYFLIV+ Sbjct: 297 DAVSKENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVS 356 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGS+ AYALTITD+DPLRF+LLFERFLNP+R+SMPDFDID Sbjct: 357 DFIKWAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDID 416 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR EVI YVQ +YG + VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P Sbjct: 417 FCQDRRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 476 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA PV+ +AI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS Sbjct: 477 NPAAPVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLS 536 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L Q + VDL+ Sbjct: 537 ELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAH 596 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD +TY +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 597 LPLDDKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 656 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKK Sbjct: 657 YCARKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKK 716 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+ EM+KQ+ RF+SG+ ++ ISK+ A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 717 IRAEMEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMK 776 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+AASMTL+ N +K+ +F +A++ I++ PPS+N F VG+N I+YSLA Sbjct: 777 AHYPVEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLA 836 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+KGVGT I+EA + PF SL DF +RV + +N+RVLESL AGA D +R Sbjct: 837 ALKGVGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRA 896 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + D I Q + ++F + G ITL + R + E + Sbjct: 897 AVFAGADAILAACQRSHEEAVLGQSDMFGGQTGG--PVITLPHVEPWLPAERLQREYGAV 954 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ SGHPLD YK +L+++ ++ + E + ++ ++AA VVS+ +++T+ G+++G Sbjct: 955 GFFLSGHPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGI 1014 Query: 1018 VTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1015 IGLSDPTGHFEAVLF 1029 >gi|86604788|ref|YP_473551.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-3-3Ab] gi|86553330|gb|ABC98288.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-3-3Ab] Length = 1161 Score = 804 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 372/1041 (35%), Positives = 599/1041 (57%), Gaps = 26/1041 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L +HS YSLL+GA L +++++ A P +A+TD ++ A+E + + GI+P Sbjct: 2 AFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D + + V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINGDIRDKSRKYPK-----YHQVVLAKNTQGYKNLVKLTTISHLQGVQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +L + EGLI+ +G +G + +A ++A + +++ FGD Y+ Sbjct: 117 FARPCINKEYLAQY-KEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGDDYYIE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR+ Q+V++A +P++ TN+S F+S D EAHD L+ + +++K+ Sbjct: 176 IQDHGYREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YLK+ EM + D E ++ + + ++ + + Sbjct: 236 RLRYSGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRMPDYPVP 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L A GL R G ++Y++RL FELN+I + FS YFL+V D Sbjct: 296 PGHSADSYLTELAWQGLAKRC--GVAYPDQIPENYQERLRFELNIIQQKGFSSYFLVVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 ++++A+++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD D DF Sbjct: 354 YVRYAREHGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDIDTDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR E+I YV KYG ERVAQIITF + +KA L+DVGR L +PY++ D++ KLIP Sbjct: 414 CIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYAEADKMAKLIPVS 473 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + + F+E DP+ R +E+++ LEG + HAAG+VI P Sbjct: 474 RGKPAKLEEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVISKDP 533 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L ++VP+ + +TQ++M+ IE GL+K DFLGL+ LT++Q++++ + RGV +D Sbjct: 534 LDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHRGVTID 592 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD +TY LL GIFQLESSGM+Q + ++P +EDI ++++LYRPGP+D Sbjct: 593 LDNLPLDDEKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPGPLDT 652 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G++ + H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD+LRR Sbjct: 653 GMIPDFIDRKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM+K +E+F+ GA + G++K +A +F+ + FA+Y FNKSH+ AY +I++Q Sbjct: 713 AMGKKKVSEMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFNKSHSTAYGLITFQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YP E++AA ++ + +K++++ IQI PP +N +DF + I Sbjct: 773 TAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDINRSGLDFTPQGSSI 832 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L A+K VG ++I+ A A PF SL DFC RVD +NRR +ESL+ AGA D Sbjct: 833 LFGLGAVKNVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRAIESLICAGAFDGI 892 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRF 952 +R QL+ LD I +A K++ ++F F + + Sbjct: 893 SGNRKQLMADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPRGPATEDFPPQEKL 952 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ +LGFY S HPL + R + + ++ + A++ + + T++G Sbjct: 953 RLERELLGFYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVGILALLTAIKTVTTKRG 1012 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 R+ + + EA FP Sbjct: 1013 DRMAILQLEDLTGSCEAVIFP 1033 >gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13] gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653] Length = 1163 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 589/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A R+ K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 ALQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPKETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68] gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196] Length = 1163 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD R D+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRFDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|15893807|ref|NP_347156.1| DNA polymerase III DnaE [Clostridium acetobutylicum ATCC 824] gi|15023379|gb|AAK78496.1|AE007566_6 DNA polimerase III, alpha chain (dnaE) [Clostridium acetobutylicum ATCC 824] Length = 1167 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 375/1059 (35%), Positives = 578/1059 (54%), Gaps = 54/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YSLL+G+ + ++++ +IAITD ++ +EF + A GI+P Sbjct: 10 DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 69 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLLV GY+ L+E+VS + + Sbjct: 70 IIGCEIYVAGKSMHIKHPDAEN---ETYHLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L +EGLI + G + ++ + A+K L +K+ F D Y+ LQ H Sbjct: 126 RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 184 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D +V ++ ++PL+ATN+ ++++ED AHD+L+ + + +++R R Sbjct: 185 ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 244 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK++ EM FS + EAL NT +IA C+F + H LP F E +D Sbjct: 245 APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGEDHY--- 301 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL ++RL++EL +I M + YFLIV DFI++A Sbjct: 302 -EYLKKLCYEGLNE-------RYNPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 353 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R Sbjct: 354 RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 413 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI YV KYG + V+QI+TFG++ A+ +RDVGRA+ Y +VD++ K+IPN + Sbjct: 414 QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 473 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D + L++IS+KLEGL RH STHAAG+VI +PL VP+ + Sbjct: 474 D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 532 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + V QF M +E+ GL+K DFLGL+TLT++ ++ + Q R + +D+ I FDD+ Sbjct: 533 N--EESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 590 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP++ I Y KN Sbjct: 591 GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 650 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E+I + P + +L T G IIYQEQVMQI + L+GYS+ +D++RRAM KK M+ Sbjct: 651 NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 710 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +++ FI G KNGIS+ IA IF+ + FA Y FNKSHAAAYAV++Y Sbjct: 711 EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 770 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++ +YP E+LAA + M N EK+ + + A + IQ++PP +N F V ++ Sbjct: 771 ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 830 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAAIK VG I+ A F S DFC+++D+ ++N+R +ES++ +G D Sbjct: 831 IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 890 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951 G R +LL + I K N+F + +I + Sbjct: 891 LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 950 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----------------VATIRGNN 994 E+ + G Y SGHPL+ Y+ L+ M + G Sbjct: 951 LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1010 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + +V S +K TR + + ++ + E FP Sbjct: 1011 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1049 >gi|317152330|ref|YP_004120378.1| DNA polymerase III subunit alpha [Desulfovibrio aespoeensis Aspo-2] gi|316942581|gb|ADU61632.1| DNA polymerase III, alpha subunit [Desulfovibrio aespoeensis Aspo-2] Length = 1173 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 423/1043 (40%), Positives = 609/1043 (58%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA+ +N++L + PA+AITD ++F A+ F +A A GI+PI Sbjct: 4 FVHLHVHSEYSLLDGAIRINDLLARAKDLGMPAVAITDHGSMFGAMTFYTEALAMGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D +VLL GY+ LI+LV+ YL + R Sbjct: 64 IGCEVYVAPGDIDDAHAHEVKDKSGGYHLVLLAKNRIGYKNLIKLVTTGYL-EGFYYKPR 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L + EGLI L+ +G + R + ++ +F Y+ LQ + Sbjct: 123 VSK-YLLKQHAEGLIALSACLAGEVPRMLMNEGLEAGAAMAGEYESIFPGNFYLELQDNG 181 Query: 191 GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 + R ++ +++ A LPLVATN+ +L+ EDYEAHD L+ + T V + R R+ Sbjct: 182 IGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRMD 241 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K EM F+ +PEA+ NT IA RC+ +++ + P + E + Sbjct: 242 TRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGSYYFPEYELSEG---VADIN 298 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 E GL RLA AI Y +RLD+EL VI +M F YFLIV DFI WAK Sbjct: 299 EEFEKLCREGLRKRLA--AIPYPVDEAVYWKRLDYELGVIIKMGFPAYFLIVQDFINWAK 356 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR Sbjct: 357 DNRIPVGPGRGSAAGSIVAWSLRITNLDPLPYDLLFERFLNVERISMPDIDVDFCERRRL 416 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV++Y +KYGH+RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP DP Sbjct: 417 EVVKYCADKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPGVMAK 476 Query: 489 LQAIADDS-----------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L + + DP V +L++IS +LEGL RHASTHAAG+VI DR Sbjct: 477 LLGVEKAKISVPNAVKAVIELDDMVATDPRVAKLIDISTRLEGLCRHASTHAAGVVISDR 536 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-V 596 P+++ +P+Y+ + VTQF+MK +EK GLIKFDFLGL+T+T+++ LD + ++G Sbjct: 537 PMTEFLPLYKG-KKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKHAP 595 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL + DD TY + T GIFQ+ESSGMR+ L ++P+C EDIIA+++LYRPGP+ Sbjct: 596 DLDTLALDDPATYDIFAKGDTDGIFQVESSGMRKYLRMLRPNCFEDIIAMLALYRPGPLG 655 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +V + RK+G+ + HP ++ LK T GV++YQEQVM A +++ YSL E D+LR Sbjct: 656 MGMVDEFIKRKHGEVAVSYPHPSLEDTLKPTYGVMVYQEQVMATAMIIANYSLGEGDLLR 715 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKI EEM Q+ RF+ GA +N I + +A IF+ + KFA YGFNKSH+AAYA+ISY Sbjct: 716 RAMGKKIAEEMAMQRARFLEGARENKIDEAVANAIFDTMEKFAAYGFNKSHSAAYALISY 775 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TA++K H+PVEF+AA M+ EM+N EKI + R +I + P +N F V D Sbjct: 776 HTAYLKAHFPVEFMAALMSTEMNNTEKIVMYINACRDMDITVKQPDINAGQARFSVLDGD 835 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I +++AAIK VG I+ A PF + FC R++ +++ +RVLESL+ AGALDC Sbjct: 836 ILFAMAAIKNVGEEAINEIVAERVAGGPFKDIFAFCERINLRRVTKRVLESLIKAGALDC 895 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSV 950 F SR LL+ L+ + Q K + + ++ G + + Sbjct: 896 FSCSRAALLEDLEKAVGFGQKKAKEKESGMLSMLDMLGGASAQAAHTPTCSSCEEFDDRE 955 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E E+ VLGF+ SGHPL Y+ L ++ E+ + G +R+A ++ +Q T+ Sbjct: 956 KLEMEKEVLGFFLSGHPLLAYRHELARLRTATLEDCKSMPNGTEVRVAVIIPDYKQFITK 1015 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG + + T + E P Sbjct: 1016 KGDPMAFCTAEDLTTSGEITMLP 1038 >gi|86608659|ref|YP_477421.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557201|gb|ABD02158.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1165 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 380/1045 (36%), Positives = 600/1045 (57%), Gaps = 30/1045 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L +++++ A P +A+TD ++ ALE + + GI P Sbjct: 2 SFVPLHLHSEYSLLDGASQLPRLVEQVVAMGLPGLALTDHGVMYGALELVKLCKSKGITP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D + + V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINGDIRDKSRKYPK-----YHQVVLAKNTQGYKNLVKLTTISHLHGIQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +L + EGLI+ +G +G + +A ++A + +++ FGD Y+ Sbjct: 117 FSRPCINKEYLVQY-KEGLIVTSGCLAGEVPQAILQRRPEIAREVAAWYQEQFGDDYYIE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR+ Q+V++A +P++ TN+S F+S D EAHD L+ + +++K+ Sbjct: 176 IQDHGYQEDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T YLK+ EM + D E ++ + + ++ + + Sbjct: 236 RLRYTGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGEMRMPDYPVP 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ L A GL R G Q+Y++RL FELN+I + FS YFL+V D Sbjct: 296 PGHSADSYLTELAWQGLAKRC--GVAQPDQIPQNYQERLRFELNIIQQKGFSSYFLVVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 ++++A++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD D DF Sbjct: 354 YVRYAREQGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDIDTDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR E+I YV KYG ERVAQIITF + +KA L+DVGR L +PYS+ D++ KLIP Sbjct: 414 CIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYSEADKMAKLIPVS 473 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + + F+E DP+ R +E+++ LEG + HAAG+VI P Sbjct: 474 RGKPAKLEEMIGEDTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVIAKDP 533 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L ++VP+ + +TQ++M+ IE GL+K DFLGL+ LT++Q++++ + + V +D Sbjct: 534 LDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHNGVNID 592 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD +TY LL GIFQLESSGM+Q + ++P +EDI ++++LYRPGP+D Sbjct: 593 LDNLPLDDKKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPGPLDT 652 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G++ + H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD+LRR Sbjct: 653 GMIPDFIDRKHGRKPVTYAHELLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM+K +E+F+ GA+K G+S+ +A +F+ + FA+Y FNKSH+ AY +I++Q Sbjct: 713 AMGKKKVSEMEKHREQFVQGAAKRGVSQEVATELFDQMVAFAEYCFNKSHSTAYGLITFQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K +YP E++AA ++ + +K++++ IQI PP +N +DF + I Sbjct: 773 TAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIQPPDINRSGMDFTPQGSSI 832 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L A+K VG ++I+ A AD PF SL DFC RVD + +NRR LE+L+ AGA DC Sbjct: 833 LFGLGAVKNVGEGAIQNILAARQADGPFTSLADFCQRVDLRIVNRRALEALICAGAFDCI 892 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENS 948 +R QL+ LD I +A K++ ++F F + Sbjct: 893 SGNRKQLIADLDPILSWAAQRAKSKAIGQASLFDLLGSSGSAGNGFVEAPRGPVTEDFPP 952 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ +LGFY S HPL + R + + ++ + A+V + + Sbjct: 953 QEKLRLERELLGFYVSDHPLRRIQEQARLLAPVNLADLGGCAADASVGVLALVTAIKNVT 1012 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG R+ + + EA FP Sbjct: 1013 TKKGDRMAILQLEDLTGSCEAVIFP 1037 >gi|325507930|gb|ADZ19566.1| DNA polymerase III DnaE [Clostridium acetobutylicum EA 2018] Length = 1164 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 375/1059 (35%), Positives = 578/1059 (54%), Gaps = 54/1059 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YSLL+G+ + ++++ +IAITD ++ +EF + A GI+P Sbjct: 7 DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + +VLLV GY+ L+E+VS + + Sbjct: 67 IIGCEIYVAGKSMHIKHPDAEN---ETYHLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 122 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L +EGLI + G + ++ + A+K L +K+ F D Y+ LQ H Sbjct: 123 RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 181 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D +V ++ ++PL+ATN+ ++++ED AHD+L+ + + +++R R Sbjct: 182 ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 241 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK++ EM FS + EAL NT +IA C+F + H LP F E +D Sbjct: 242 APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGEDHY--- 298 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL ++RL++EL +I M + YFLIV DFI++A Sbjct: 299 -EYLKKLCYEGLNE-------RYNPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R Sbjct: 351 RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 410 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI YV KYG + V+QI+TFG++ A+ +RDVGRA+ Y +VD++ K+IPN + Sbjct: 411 QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 470 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D + L++IS+KLEGL RH STHAAG+VI +PL VP+ + Sbjct: 471 D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 529 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + V QF M +E+ GL+K DFLGL+TLT++ ++ + Q R + +D+ I FDD+ Sbjct: 530 N--EESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP++ I Y KN Sbjct: 588 GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 647 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E+I + P + +L T G IIYQEQVMQI + L+GYS+ +D++RRAM KK M+ Sbjct: 648 NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 707 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +++ FI G KNGIS+ IA IF+ + FA Y FNKSHAAAYAV++Y Sbjct: 708 EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 767 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++ +YP E+LAA + M N EK+ + + A + IQ++PP +N F V ++ Sbjct: 768 ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAAIK VG I+ A F S DFC+++D+ ++N+R +ES++ +G D Sbjct: 828 IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951 G R +LL + I K N+F + +I + Sbjct: 888 LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 947 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----------------VATIRGNN 994 E+ + G Y SGHPL+ Y+ L+ M + G Sbjct: 948 LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1007 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + +V S +K TR + + ++ + E FP Sbjct: 1008 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1046 >gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513] Length = 1163 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPR + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRLTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTIT +DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITGVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|322382903|ref|ZP_08056738.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153172|gb|EFX45627.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1210 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 365/1050 (34%), Positives = 592/1050 (56%), Gaps = 44/1050 (4%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 HS YSLL+GA ++++ ++ A A+A+TD ++ + F + GI+PIIGC++ Sbjct: 2 HSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKPIIGCEVY 61 Query: 77 IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136 + N+ + P + ++LL GY+ L++L S +L + RI L Sbjct: 62 FTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKPRIDAEHL 117 Query: 137 QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY- 195 +EGLI L+ + + + + A K ++ +FG+ Y+ +Q H ++ Sbjct: 118 AA-HSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDHGMMEQKK 176 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYL 254 +++L+ +PL+ATN+ ++ E D+E DVL+ + V +DR ++ T YL Sbjct: 177 VMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKMGTSQLYL 236 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314 K R M ++F+ +PEA+ NT ++A +C +++ ILP F L+ Sbjct: 237 KTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFE---PIPESLTAAEYLKQL 293 Query: 315 AVAG---LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + G + + Q+L +EL+VI M FS YFLIV DFI++A + Sbjct: 294 CLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYAHEQG 353 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF +RRDEVI Sbjct: 354 IMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERRDEVI 413 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 YV KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+ KLIPN + Sbjct: 414 DYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTIDHA- 472 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 + +S RE P LL +++++EG+ RHASTHAAG+VI PL+ VP+ + Sbjct: 473 LEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPLQ-EGTE 531 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYH 610 P+TQ++M+ +E GL+K DFLGL+TL++++++L Q G VD + D +TY Sbjct: 532 QTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDPKTYE 591 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LL+ T G+FQLES GMR+ L+ ++P EDII++++LYRPGP++ I Y K+ + + Sbjct: 592 LLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKHKQTE 651 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 V HP ++ +LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D+Q+ Sbjct: 652 PVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDEQRS 711 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 F+ G+ G + A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP F+A+ Sbjct: 712 HFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRHFMAS 771 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------------- 831 +T N K+ ++ + R+ + ++PP +N V F Sbjct: 772 MLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGEPAEE 831 Query: 832 --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 + I + LAAIK VG + +++ + F SL DFC RVD + N+RV+E Sbjct: 832 GMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNKRVIE 891 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 SL+ AGA D R QL+ LD+ + A K + + ++F + ++ + Sbjct: 892 SLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW-EVEVPDV 950 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + + E+ ++G Y SGHPLD ++ +L ++ + + + +A MV S Sbjct: 951 PMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVVVAGMVAS 1010 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T++G + ++ + + E FP Sbjct: 1011 SKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1040 >gi|238926991|ref|ZP_04658751.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238885225|gb|EEQ48863.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 1130 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 378/1034 (36%), Positives = 596/1034 (57%), Gaps = 30/1034 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+GA + ++ + A+A+TD ++ A+ F ++A A GI P Sbjct: 2 AFAHLHVHTEYSLLDGASRIKELVCRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + T ++LL GY+ L++L+S + + Sbjct: 62 IIGCEVYLAPRQRQERAEVNGTR---YYHLILLAENECGYRNLVQLISLANI-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L+ +GLI L+ +G I +A ++A+ + + +FG D ++ +Q Sbjct: 118 RIDKELLRRFH-KGLIALSACVAGEIPQAVLRGDMELADALVREYSGIFGRDNFFLEIQD 176 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + +LA H + LVATN+ +++ ED E HD+L+ V ++ DR R Sbjct: 177 HGLPEEKKVNRTLRRLAEKHNIGLVATNDVHYVNTEDSEFHDILLCVQTGRTLNDPDRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD+YLK+ EM ++F+D P A+ENT +IA RC LP + Sbjct: 237 FSGPDYYLKSEEEMTALFADYPGAIENTAKIAERCQVDFTFGELQLPFYPLPGGYT---T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +++ LR + R + QRLD+EL VI +M ++ YFLIV DFI + Sbjct: 294 DDDYLRALCTERIPARYPAAGN-------EVHQRLDYELGVIHKMGYASYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + + VGPGRGS AGS+ A+ L IT+IDPLR++LLFERFLNP+R+SMPD DIDF Sbjct: 347 ARGHGVAVGPGRGSAAGSIVAFLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V + KL+P + Sbjct: 407 RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + FR D R++++++K+EGL R+ S HAAG+VI PL+ VP++ Sbjct: 467 LD-RALKESADFRRRYEEDEEAHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTSQVPVW 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 V VT+++ +E GL+K DFLGL+TL+++ +++ + Q GV +++ IP D Sbjct: 526 --VSEGTLVTEYDKDDVEALGLLKMDFLGLRTLSIIADAVENIRQSHGVDINMDRIPLID 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T +L T +FQ+ES+GM ++ +QP D+I V+LYRPGP+ + + + + Sbjct: 584 EKTSQMLCNGDTGAVFQMESAGMTNLVKELQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +GK+ +V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK E Sbjct: 644 GLHGKKDVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + QKE F+ G KNGI+ +A +IF+LL FADYGFNKSH+AAY ++++QTA++K HY Sbjct: 704 LLMAQKEIFLQGCEKNGIAAELANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+A +T MD +KI + Q Q I I+PP +N F + D I + LAA++ Sbjct: 764 PVEFMAGVLTSIMDKTDKIPVYIQLCHQMKINILPPDINASTASFSIEDGAIRFGLAAVR 823 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG +++ A+ F SL +FC+RVD + +N+R +ESL+ GA DC G R QLL Sbjct: 824 NVGEAAIGSMVQVRAEGGKFHSLVNFCARVDMRTMNKRAIESLIKCGAFDCLGRERNQLL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961 SLD + A +++R + +F+ + +I + R E+ GF Sbjct: 884 YSLDFAMQDAARSQRDRMSGQIGLFSSDTMESVQQIQDFPDVPPTTAEERLMWEKEATGF 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y +GHPLD Y+ L + + +R+ ++ + ++ T+KG + + Sbjct: 944 YITGHPLDDYRDTLSSL--LPINDIRGELRKDRQLVRIGGILTNTKRYTTKKGDTMLFAE 1001 Query: 1020 FSEPAKEYEANFFP 1033 + + E FP Sbjct: 1002 MEDFSGRIEVTVFP 1015 >gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840] gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840] Length = 1163 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRIVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGGDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|302385506|ref|YP_003821328.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] gi|302196134|gb|ADL03705.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1] Length = 1160 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 367/1047 (35%), Positives = 564/1047 (53%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + ++ + ++AITD ++ ++F + A GI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIKELVARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + G +VLL +GYQ L+++VS+ + +D Sbjct: 62 IIGCEVYVTSGSRFDRETAGGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VDGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E +EG+I L+ +G + R + + L ++++FG + ++ LQ Sbjct: 119 RVDYEVLREY-SEGIIALSACLAGEVQRLVSRGLYEKGMEAALRYQEIFGKENFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + ++++++ + LVATN+ + ED HD+L+ + V+ ++R R Sbjct: 178 HGIPAQNTVNQGLLRMSHETGIQLVATNDIHYTYAEDATPHDILLCIQTGKKVADENRMR 237 Query: 248 VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y + + FS EA++NT IA RC+ ++ LP++ E D Sbjct: 238 YEGGQYYCKSEDEMRTLFSYAGEAIDNTHRIAERCNVEIEFGVTKLPKYDVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + G ++RLD+EL+VI M + YFLIV DFI + Sbjct: 294 SWSYLNKLCLDGFHRHYP-------LDDGTLKERLDYELDVIHSMGYVDYFLIVWDFIHY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 ARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERISMPDIDVDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QI+TFG+L AK +RDVGR L M Y++ D + K+IP D Sbjct: 407 RQEVIDYVVQKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDMSYARCDSIAKMIPGDLGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R A DP V L+++S +LEGL RH S HAAG+VI + + VP+ Sbjct: 467 LE-KALRQSPDLRNAYEGDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605 R TQF M +E+ GL+K DFLGL+TLT++Q ++ R + +D+ I ++D Sbjct: 526 RAA-DGTITTQFPMTTLEELGLLKMDFLGLRTLTVIQNAVKAIEKNRNLSLDMDRIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T G+FQLESSGM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KAVLDSIGTGRDDGVFQLESSGMKSFMKELKPESLEDIIAGISLYRPGPMDFIPKYLKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM KK M Sbjct: 645 NDRSSITYECKQLEPILNPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTYVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + IA I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 EKERQNFVYGNPEEEVTGCISNGIDEKIANQIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF+AA +T MDNV K+ ++ RQ I I+PP +N F V I Y Sbjct: 765 FLKYYYPEEFMAALLTSVMDNVSKVSEYILSCRQMGIPILPPDINEGESGFSVSGRSIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK VG + I+ + F +EDF R+ +K++N+R LE+ + +GALD Sbjct: 825 GLSAIKSVGKSVVELIVAEREQNGLFHDMEDFIDRMSNKEVNKRTLENFIKSGALDTLPG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q L + + + KN +F A E+ ++T Sbjct: 885 TRKQKLLTAPELLEQRSKERKNTMEGQMTLFDIAGEEEKTHFQVTFPDVGEFLKEDLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006 E+ LG Y SGHP++ Y+ R E G+ + + M+ K Sbjct: 945 EKETLGIYLSGHPMEAYETTWRNHITATTIEFVVDEETGKAGVPDGSYVTVGGMITGKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + A E FP Sbjct: 1005 KTTRNNKMMAFITLEDLAGAVEVIVFP 1031 >gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457] gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457] gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str. 63/9] Length = 1163 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAALF 1044 >gi|308068343|ref|YP_003869948.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681] gi|305857622|gb|ADM69410.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681] Length = 1225 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 397/1030 (38%), Positives = 600/1030 (58%), Gaps = 16/1030 (1%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SFVHL VHS YSLL+GA ++ + +A A+A+TD ++ A+ F + GI+ Sbjct: 2 SSFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ + + +G + ++LL GYQ L++L S +L + Sbjct: 62 PIIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + L EG+I L+ G + + A + ++ +FGD Y+ LQ Sbjct: 118 PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRNIFGDDFYLELQD 176 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++ LA ++PLVATN+ +L+E D + DVL+ + V ++R R Sbjct: 177 HGLSEQKRVNPLLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLR 236 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T +LK++ +M +F + EA+ NTV IA +C L+ ILP + Sbjct: 237 IPTRQLFLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY---RPLPEGMT 293 Query: 307 EENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LRN V GLE R + + + QRL +ELN I M FS YFLIV DFI Sbjct: 294 SSSYLRNLCVQGLERRYGSDSRWEQPEERERLNQRLSYELNTIDSMGFSDYFLIVWDFIA 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A K+ I GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF + Sbjct: 354 FAHKHKIATGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+ KLIP Sbjct: 414 RRDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + A+ + P LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 474 NI-RHALEITPELKTLYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 + +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A+ G D S IP + Sbjct: 533 Q-EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCIHWIAEDHGETPDFSRIPDN 591 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY LL T G+FQLES+G+R+ L+ ++P EDII++++LYRPGP+ I + Sbjct: 592 DPHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQA 651 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+ +I HP ++P+LK+T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E Sbjct: 652 KHGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREV 711 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +D ++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYP Sbjct: 712 LDLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843 V+F+A+ +T M + K+ ++ + R+ +I ++PP VN V F I + LAAIK Sbjct: 772 VQFMASMLTAVMGSHRKVAEYVVECRRMDITVLPPDVNESGVLFTPLQQGGIRFGLAAIK 831 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VGT I+ ++ FDSL DFC RVD + N+RV+ESL+ AGA D R QLL Sbjct: 832 NVGTQAMESILAVRKERLFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLA 891 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD A K R + ++F + D I ++S + E E+ +LG Y Sbjct: 892 MLDETVDAAVKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPQFSASQQLELERELLGLYL 950 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHPLD ++ +L E + A MVVS + T++G + ++ + Sbjct: 951 SGHPLDDFESLLESSEADRLMELGDVPDETVVVTAGMVVSLKTITTKQGKAMAFIELEDQ 1010 Query: 1024 AKEYEANFFP 1033 + E FP Sbjct: 1011 IERCEVVLFP 1020 >gi|153853950|ref|ZP_01995283.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814] gi|149753332|gb|EDM63263.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814] Length = 1158 Score = 802 bits (2071), Expect = 0.0, Method: Composition-based stats. Identities = 370/1047 (35%), Positives = 570/1047 (54%), Gaps = 39/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD ++ ++F + A AAGI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGVMYGVIDFYRAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G + +VLL GY L+++VSR + + Sbjct: 62 ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDLGYHNLMKIVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L LQE EG+I L+ +G + + + + L ++ +FG ++ LQ Sbjct: 120 RVDLEVLQEFH-EGIIALSACLAGEVQKNILRGMYEEGKAAALRYQDIFGKGNFFLELQD 178 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +Q +++++ + LVATN+ + ED + HD+L+ + ++ +DR R Sbjct: 179 HGMQEQQIVNQSLLRMSQETGIELVATNDVHYTYAEDVKPHDILLCIQTGKKLADEDRMR 238 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC+ ++ LP++ E Sbjct: 239 YEGGQYYIKSEEEMKQLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL+ R G ++RL++EL+VI M + YFLIV DFI + Sbjct: 295 SWEYLNKLCFDGLKERYPDGD-------DSLKERLEYELSVIKSMGYVDYFLIVWDFINY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 348 ARTQGIKVGPGRGSAAGSIVSYCLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K++P + Sbjct: 408 RQEVIDYVGRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDSIAKMVPTELNIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F++ D V L+++S++LEGL RH S HAAG+VIG R + + VP+ Sbjct: 468 LD-KALKMNPEFKKLYQEDEQVKELIDMSRRLEGLPRHTSMHAAGVVIGQRAIEEFVPLS 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 TQF M +E+ GL+K DFLGL+TLT++Q + + G +D++ I +DD Sbjct: 527 LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAERLASISSGKTIDINKIDYDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 586 KAVLASIGTGKTDGVFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 646 NNPDSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 706 QKERQNFVYGNPDEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V I Y Sbjct: 766 WLKYYYPVEFMAALMTSVIDNPGKVSEYIYSCRQMGIKILPPDINKGEGSFSVDGGNIRY 825 Query: 838 SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK +G I++ + F +L+DF R+ K++N+R +ES + +GA D G Sbjct: 826 GLAAIKSIGKPVIESIIQERKNGGEFSNLKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I K ++F + I L + Sbjct: 886 TRKQFMVVYVQILDQVNRERKYSMTGQLSLFDIVSDDQKSEFDIPLPDVGEYEKETKLAF 945 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ +K + + G + M+ +K Sbjct: 946 EKEVLGVYLSGHPLEDYEEKWKKNISRTTLDFQIDDETGRTKVHDGAKEIVGGMITNKTI 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1006 KYTKTNKVMAFITLEDLVGSVEVVIFP 1032 >gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1165 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 640/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL+VHS+YSLLEGAL L IL K D QPAIAITDTNNLF ALEFSQKA G+ Sbjct: 16 TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFIALEFSQKAMDDGL 75 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 QPIIGCQ+ IDM+D L+ +G +PSIVLL +T GY+RL+++VSR YL + Sbjct: 76 QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDVVSRAYLGGESN 135 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q++ I SWL+E GTEGLI LTG +GP+D A E RLL K+LFGDRLYV L Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIKEGHPAQGEARLLALKRLFGDRLYVEL 195 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 QRH YD+ E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS R Sbjct: 196 QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304 R+TPDHYLK+R+EM +F+DLPEALENT+EIA+RCSF+L+ PILPRF + ++ + Sbjct: 256 RLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E +ELR +AV GL++RLA ++ GY DYR+RLDFEL+VI RM+F GYFLIVADFI Sbjct: 316 RAEASELRRQAVEGLDMRLATLGMSPGYEEMDYRERLDFELSVIERMRFPGYFLIVADFI 375 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ Sbjct: 376 KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA Sbjct: 436 DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +P +AI ++ + +E +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV Sbjct: 496 NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP Sbjct: 556 PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY +L+ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN Sbjct: 616 DDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK Sbjct: 676 RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EMD+Q+ERF+ GA KNG+SK A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY Sbjct: 736 EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEFLAASMTL+M N EK+ F QDA++ I+++ PSV T F+ GDNRIYY+LAA+K Sbjct: 796 PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFQTGDNRIYYALAALK 855 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 GVG + HI+E DKPF +EDFC R+D +++NRRVLESL+FAGA DCFG R QL Sbjct: 856 GVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFAGAFDCFGTDRAQLSA 915 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 LD I YAQ ++N+ + +IF + +KI+L FS +S R E +VLGFY Sbjct: 916 GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLASERLLKEFQVLGFYL 975 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HPLD Y +L+KM ++ + E I+ N RLA V+SKQ++KTR G+++G + FS Sbjct: 976 TAHPLDSYANLLQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQERKTRTGNKMGIIVFS 1035 Query: 1022 EPAKEYEANFF 1032 + + ++EA F Sbjct: 1036 DSSGQFEAVLF 1046 >gi|220928884|ref|YP_002505793.1| DNA polymerase III DnaE [Clostridium cellulolyticum H10] gi|219999212|gb|ACL75813.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1159 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 375/1056 (35%), Positives = 593/1056 (56%), Gaps = 51/1056 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ ++ ++AITD ++ +EF ++A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGVMYGVVEFYKEAVENGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + +VLL GY+ L+++VS + + R Sbjct: 64 LGCEVYTAKRTMQDKQPGIDSDYG---HLVLLAKNQIGYKNLMKIVSLGFT-EGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ +EG+I L+ SG I A N + A + ++FG Y+ LQ + Sbjct: 120 VDYETLERY-SEGIIALSACLSGDIPSAILSNDYEKAVELANRLNRIFGQGNFYLELQHN 178 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++++ +PLVATN++ +L++E ++H++L+ + ++ +R R Sbjct: 179 GINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSHEILLCIQTGKTINDDNRMRF 238 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K+ EM F ++ +ALENTV+IA C+ L+ LP F +E Sbjct: 239 NTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVELEFGKLHLPSFDVEEG----YTP 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR + GL+ R + +++ RL++EL+VI++M + YFLIV DFI++A Sbjct: 295 YEYLREQCYKGLKSRYGE------SCSEEIVHRLEYELSVISQMGYVDYFLIVWDFIRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 349 RDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A +RDVGRAL +PY VD + K+IP + Sbjct: 409 QEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPYGDVDAIAKMIPFQIGMNI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + ++ D L++ ++ LEGL RHASTHAAG+VI P+ + VP+ Sbjct: 469 D-KALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPLQL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + TQ +E+ GL+K DFLGL+TLT+++ ++D + Q G K+D+ I FDD Sbjct: 528 N--DNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLVEQGHGRKIDIQQIDFDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y ++ T+G+FQLES+GM Q ++ +QP +EDIIA +SLYRPGP+D I Y KN Sbjct: 586 DVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIRNKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I HP+++ +L T G ++YQEQVMQI + L GYS+ +D++RRAM KK M+ Sbjct: 646 NPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELGGYSMGRSDLVRRAMSKKKISVME 705 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA KNG+ + A IF+ + FA Y FNKSHAAAYAV++Y Sbjct: 706 QERKNFIYGITDEEGNEIVKGAVKNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVVAY 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YP+EF+AAS+ + + +K+ ++ + + NI+++PP +N V F V + Sbjct: 766 QTAWLKFYYPIEFMAASINSFLGSSDKVSQYVNECKILNIKVLPPDINESNVKFTVINKN 825 Query: 835 IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAAIK VG + I+E + F S DFC R++ + +N+R +ESL+ +GA D Sbjct: 826 IRFGLAAIKNVGENAIKSVIVERQQNGEFKSFLDFCQRIEGRDINKRCIESLIKSGAFDS 885 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRF 952 R +L+ + + K + +IF + ++V Sbjct: 886 LKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDYPDIKEYPANVLL 945 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---------------VATIRGNNIRL 997 E+ +LG Y SGHPL Y+ IL E + + Sbjct: 946 AMEKEMLGLYVSGHPLSEYQDILETNVNLYSSEMFIDTDENSNDIELNSKKLQDSMKVTV 1005 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +VVSK+ K T+ + + +V + E FP Sbjct: 1006 GGIVVSKKTKATKNNNLMAFVGLEDLYGTMELIVFP 1041 >gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278] gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278] Length = 1174 Score = 802 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 533/1037 (51%), Positives = 706/1037 (68%), Gaps = 14/1037 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F ALEFS K Sbjct: 1 MSSA-GFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI GC+L ID D + + IVLL + EGY+ L+ L SR +L Sbjct: 60 YGIQPIAGCELAIDFGD-MDPNARNAGAVAQPSRIVLLAANEEGYRHLMRLNSRAFLETP 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q+ I WL E G +GLI LTGG GPI A + + +A +R FGDRLY+ Sbjct: 119 THQAPHIKFDWLTE-GVDGLIALTGGPDGPISLALQHDMAALAAQRCERLAGQFGDRLYI 177 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ +AY LPLVATN F S +DYEAHD L+ +A +++ Sbjct: 178 ELQRHGTERERRVEGGLIDIAYDKGLPLVATNEPYFASTDDYEAHDALLCIAGGHLIADT 237 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301 DR ++TPDH K R+EM +F+DLPEAL +TVEIA RCS+ + PILP F Sbjct: 238 DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCSYRPRTRKPILPFFTVGAGTGD 297 Query: 302 --DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D E EL+ +A GLE RL +A G +DY++RL FEL+VI RMK++GYFLI Sbjct: 298 TVDAASAEAAELKRQAEEGLERRLKVHGMAPGMTEEDYQKRLAFELDVIMRMKYAGYFLI 357 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFD Sbjct: 358 VSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFD 417 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 418 IDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 477 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA PV+ AI + + + R DP V R +I+ +LEGL RHASTHAAGIVIGDRP Sbjct: 478 PQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRP 537 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V VDL Sbjct: 538 LSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDL 597 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 598 ATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANI 657 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMG Sbjct: 658 PTYCARKHGEEEPEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMG 717 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ RF+ GA KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 718 KKIRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 777 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEF+AASMTL+++N +K+ +F +A++ I++ PPS+N F+V N I+Y+ Sbjct: 778 MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYA 837 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAA+KGVG I+EA PF SL DF SRV + +N+R++E+L AGA DC + Sbjct: 838 LAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVSPRAINKRIIETLAAAGAFDCLDKN 897 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ D I Q + T+ ++F + + I L + R E Sbjct: 898 RARVFAGADAIVAACQRANEAATSGQNDMFGNAAD--APAIILPNIENWLPAERLRREYD 955 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++ Sbjct: 956 AIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKM 1015 Query: 1016 GWVTFSEPAKEYEANFF 1032 G + S+P +EA F Sbjct: 1016 GIMGLSDPTGHFEAVLF 1032 >gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445] gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445] Length = 1163 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 590/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF+ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFAALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|291280374|ref|YP_003497209.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1] gi|290755076|dbj|BAI81453.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1] Length = 1160 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 408/1047 (38%), Positives = 615/1047 (58%), Gaps = 34/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL +H+ YSLL+GA+ ++ ++ K+ + A+AITD ++ ++F +A A Sbjct: 1 MSK--DFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+PIIGC++ + K +VLL T G + L LVS+ ++ + Sbjct: 59 NDIKPIIGCEVYVAPDSRFNKNYDKKE--DKNYHLVLLAQTNTGLKNLQYLVSKAHI-EG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L + ++GLI L+ +G R + A+K L + ++ G D + Sbjct: 116 FYYKPRIDKELLAK-HSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYF 174 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + ++ ++++++ +PLVATN+ FL+ EDY +H VLM + + ++ Sbjct: 175 LEIQDNGINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLND 234 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + + Y+K+ EM F+++ EAL NTV+IA RC+ + LP + E Sbjct: 235 PNRRDSHSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEG- 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + + GL RLA+ + Y +RL++EL +I + GY+LIV Sbjct: 294 ---YTLKTYLEHISKEGLHKRLAKVPL---ELHSKYYERLEYELKIIHEKGYDGYYLIVW 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID Sbjct: 348 DFINYARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV+NKYGH+RVAQIITFG L A+ +RDVGR L++P VD++ K+IP Sbjct: 408 FCMNRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPE 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + +A+ DS + + LL+ + KLEGL R+A HAAG+VI D+PL + Sbjct: 468 KPGLTLK-KALEMDSELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVE 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600 VP+ + ++D VTQF +EK GL+KFDFLGLK LT++ + + + D+S Sbjct: 527 YVPLCKG-QNDEVVTQFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISS 585 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNI 658 IP DD +T+ LL++ T G+FQLESSGM+ L+ ++P EDIIALV+LYRPGP + Sbjct: 586 IPLDDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGML 645 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK+G +++ P ++ +LKET G+I+YQEQVMQIAQ+++GYSL AD+LRRAMG Sbjct: 646 DDFVKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMG 705 Query: 719 KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 KK EEM K +E F+ GA K G + IA IF+L+AKFA+YGFNKSH+AAYA Sbjct: 706 KKKPEEMAKHREIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTA++K HYPVE++AA ++ E++ +K+ F + ++ I+++ P +N DF + Sbjct: 766 MVSYQTAYLKAHYPVEYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFII 825 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I + L AIK VG I++ + + S+ D C RVD + +NR+VLESL+ AG Sbjct: 826 TGDSIRFGLGAIKNVGFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAG 885 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK---HENIFAHEKGTFSDKITLEKFSVE 946 ALD FG +R Q LQ LD+ + Q ++ + E+I ++ Sbjct: 886 ALDSFGKNRRQHLQVLDDAIESGQKEQQLKNEGIITIEDILKENGIDEIEEEHYPDVEEM 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ VLGFY + HPL Y IL K + T N I + +V + Sbjct: 946 PENELLKFEKEVLGFYLTNHPLVNYSNILDIF-TKRSSDIETTDENNLIMVGGIVKGVKN 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ R+ +VT + + FP Sbjct: 1005 YITKTNERMAFVTLEDLEGTMDVVVFP 1031 >gi|166032119|ref|ZP_02234948.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755] gi|166027842|gb|EDR46599.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755] Length = 1156 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 379/1047 (36%), Positives = 572/1047 (54%), Gaps = 39/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGCMFGVIDFYRAARAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G + +VLL EGY L+++VSR Y + Sbjct: 62 ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDEGYHNLMKIVSRGYT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L L+E EG+I L+ +G + + L ++++FG ++ LQ Sbjct: 120 RVDLELLREFH-EGIIALSACLAGEVQKNITRGMYSEGRAAALRYEEIFGKGNFFLELQD 178 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++++ + LVATN+ + ED AHD+L+ + ++ +DR R Sbjct: 179 HGIPEQQTVNQALMRMSQETGIELVATNDIHYTYAEDARAHDILLCIQTGKKLADEDRMR 238 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC ++ LP++ + Sbjct: 239 YEGGQYYIKSEEEMKKLFPYALQALENTQKIADRCDVEIEFGVTKLPKYDVPDG----LS 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GLE R +QD + RLD+EL+VI +M + YFLIV DFI + Sbjct: 295 SWEYLNKLCYEGLERRYPN-------PSQDLKDRLDYELSVIHKMGYVDYFLIVWDFIHY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I VGPGRGSGAGS+ AY L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 348 ARSQKIMVGPGRGSGAGSIVAYCLEITSIDPIKYQLLFERFLNPERVSMPDIDVDFCYER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + KLIP + Sbjct: 408 RQEVIDYVGRKYGADRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKLIPKELNIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ S R++ DP V L+++S +LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 468 LD-KALKTSSELRKSYEEDPQVKELIDMSMRLEGLPRHTSMHAAGVVISQKPVEEYVPLS 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 TQF +E+ GL+K DFLGL+TLT+++ + F G +++++ I FDD Sbjct: 527 LGS-DGSVTTQFVATTLEELGLLKMDFLGLRTLTVIRDAEKFASYSSGKEININKINFDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 586 KAVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 E I P ++P+L T G I+YQEQVMQI + L+GY+L +D++RRAM KK + M Sbjct: 646 EHPELITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKADVM 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 706 AKERQNFVYGNPEEGVPGCIANGIDEKTANKIYDEMTDFAKYAFNKSHAAAYAVVSYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVE++AA MT +DN K+ ++ RQ I+I+PP +N F V + I Y Sbjct: 766 WLKYYYPVEYMAALMTSVIDNPGKVAEYIYSCRQMGIKILPPDINHGYSSFSVDNGSIRY 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK +G + I+ + F +L+DF R+ K +N+R +E+ + +GA D G Sbjct: 826 GLAAIKSIGRPVIKEIVAERKANGEFKNLKDFIERMSGKDINKRTIENFIKSGAFDELGG 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I +KN +F E+ I L S + Sbjct: 886 TRKQFMVIYVQILDQVNREKKNSMTGQMTLFDIVGEEQKSEFDIPLPNVGEYEKSTKLAF 945 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHP++ Y+ RK K ++ G + ++ SK Sbjct: 946 EKEVLGIYLSGHPMEEYEEQWRKGISKTTQDFQFDEELGFSRVSDGAAEIIGGIIASKTI 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1006 KYTKNNKTMCFLTIEDIMGSVEVVVFP 1032 >gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1] gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1] Length = 1163 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKG G HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGAGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|323700171|ref|ZP_08112083.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. ND132] gi|323460103|gb|EGB15968.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans ND132] Length = 1184 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 417/1050 (39%), Positives = 611/1050 (58%), Gaps = 36/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ +N++L + PA+AITD ++F A+ F A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMFGAVVFYMAAKELGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D + ++LL GY+ LI+LVS YL D R Sbjct: 64 IGCEVYVAEGDVDDEEAHLRKEHGGGYHLILLAKNQRGYKNLIKLVSTGYL-DGFYYKPR 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L++ +EGLI L+ +G I R + T++ +F Y+ LQ + Sbjct: 123 VSKHLLKKY-SEGLIALSACLAGEIPRKLMNEGLEAGADMARTYESIFPGNFYLELQDNG 181 Query: 191 GYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 + R ++++ + A LPLVATN+ +L+ ED+EAHD L+ + T V + R R+ Sbjct: 182 IGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDFEAHDTLLCIQTQTTVDAEKRFRME 241 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K EM F+ +PEA+ NT IA +C+ +++ P + E + Sbjct: 242 TKELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYKLPEGVSMN---- 297 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 E GL+ RL I Y +RLD+EL VI +M F YFLIV DFI WAK Sbjct: 298 EEFERLCREGLQRRL--NTITYEVDEGKYWKRLDYELGVIKQMGFPAYFLIVQDFINWAK 355 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR Sbjct: 356 DHRIPVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRL 415 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP----- 483 EV++Y KYG +RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP+DP Sbjct: 416 EVVKYCAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDDPAVMAK 475 Query: 484 ------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 A A+ + + DP V +L++IS +LEGL RHASTHAAG+VI ++ Sbjct: 476 LLGVEKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISNK 535 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596 P+++ +P+Y+ + VTQF+MK +EK GLIKFDFLGL+T+T+++ LD + ++ Sbjct: 536 PMTEYLPLYKG-KKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAP 594 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655 DL + DD ET+ + T GIFQ+ESSGMR+ L + PDC EDI+A+++LYRPGP+ Sbjct: 595 DLETLHLDDPETFAIFAKGDTDGIFQVESSGMRKYLRMLGPDCFEDIVAMLALYRPGPLG 654 Query: 656 -------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + + RK+G+ + HP ++ LK T GV++YQEQVM A +++ YSL Sbjct: 655 MIGSHGVSMVDEFIMRKHGEIAVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIANYSLG 714 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E D+LRRAMGKKI EEM KQ+ RF+ G+ +NGI +A +IF+ + KFA YGFNKSH+AA Sbjct: 715 EGDLLRRAMGKKIAEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFNKSHSAA 774 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISY TA++K H+PVEF+AA M+ EM+N +KI + R +I + P +N F Sbjct: 775 YALISYHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDITVRQPDINAGQARF 834 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I +++AAIK VG I+ A+ PF ++ DFC RV+ +++ +RVLESL+ Sbjct: 835 SVKNGEILFAMAAIKNVGEEAINEIVAERAEQGPFLNIFDFCERVNLRRVTKRVLESLIK 894 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943 AGALDCF SR LL+ LD Q K + + N+ K + + T Sbjct: 895 AGALDCFSCSRAALLEDLDKAVALGQKKAKEKESGMLNMLDLLGGGGKSDATAQPTCSLC 954 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ VLGF+ SGHPL Y+ ++++ E+ G +R+A ++ Sbjct: 955 EEFEDREKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEDCKTIPNGTEVRVAVIIPD 1014 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG + + + E P Sbjct: 1015 FKQHITRKGDPMAFCNAEDLTTYGEITMLP 1044 >gi|18309342|ref|NP_561276.1| DNA polymerase III DnaE [Clostridium perfringens str. 13] gi|18144018|dbj|BAB80066.1| DNA polymerase III, subunit alpha [Clostridium perfringens str. 13] Length = 1192 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +N +VLLV +GY+ L+++VS + + R Sbjct: 66 LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I +L+E +EG+I L+ G + +A + A + + ++ F D Y+ LQ H Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNHG 180 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +F +PEALENT++IA C+F + H LP+F E E Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296 Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352 LR GL RL + G + + +RL++EL VI +M Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++V Sbjct: 417 VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+ Sbjct: 477 DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGV 535 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591 VI +PL + VP+ ++ + VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + Sbjct: 536 VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RGV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYR Sbjct: 594 RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D Sbjct: 654 PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713 Query: 712 VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759 ++RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 714 LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 774 AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 +N F V + I + + AIK VG +I ++ F SL DFC+++D +N Sbjct: 834 DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKIDLSIVN 893 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R +ESL+ AG D R QLL + I K + ++F E+ + Sbjct: 894 KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988 +I N E+ + G Y SGHPLD Y+ L++ E+ + Sbjct: 954 EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013 Query: 989 -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ + +K TR + + + + E FP Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071 >gi|315652846|ref|ZP_07905820.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum DSM 3986] gi|315485048|gb|EFU75456.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum DSM 3986] Length = 1152 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 376/1046 (35%), Positives = 573/1046 (54%), Gaps = 37/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I+ + ++AITD ++ ++F ++A A GI+P Sbjct: 2 SFTHLHVHTGYSLLDGSCKIKEIISRAKKLNMASLAITDHGVMYGVIDFYKEAKANGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + ++LL +GY+ L ++VS+ + + Sbjct: 62 ILGCEVYVSPSSRFEKQAKQG---DRYYHLILLAKNNKGYENLTKIVSKGFT-EGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L+E EG+I L+ +G I + + A+K +K LFG D Y+ LQ Sbjct: 118 RIDFELLKEYH-EGIIALSACLAGEIPKLISRGREEEAKKVAKKYKDLFGEDNFYLELQN 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +V++ ++PLVATN+ +++ ED +AHD+L+ + VS DR R Sbjct: 177 HGIPEQKFVNQSLVKIGKELDIPLVATNDIHYINAEDAKAHDILLCIQTGKTVSDPDRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +LK+ EM ++F PEA+ENT +IA C+ ++ LP + Sbjct: 237 YEGGQFFLKSEDEMKALFPYAPEAVENTGKIADMCNVEIKFGETKLPEYPVPN----NLS 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + +G E + + ++ +R+ +EL VI M + YFLIV D+I + Sbjct: 293 AREYLESLCKSGFERNYPKDY----ENREEIEKRMYYELGVIETMGYIDYFLIVWDYINY 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF +R Sbjct: 349 ARSVGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ERV QIITFG+LQA+ +RDVGRA+++PY++ D + K+IP D Sbjct: 409 RGEVIDYVVGKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +S A+ + +E +D V L++ S KLEGL RHAS HAAG+VI + + + VP+ Sbjct: 469 LS-LALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 D TQF M +E+ GL+K DFLGL+TLT+LQ +L+ + + V +DL I + D Sbjct: 528 LG-IDDAVTTQFTMTTLEELGLLKMDFLGLRTLTVLQNALEMIKKNHGVDIDLKKIDYSD 586 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y ++T T +FQLES GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y + K Sbjct: 587 KKVYEFISTGKTDAVFQLESGGMQNFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIDGK 646 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K K+ P + +L+ T G I+YQEQVMQI + L+GY++ +D +RRAM KK M Sbjct: 647 NSKGKVSYDTPKLISILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHVM 706 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + +++ FI G KNGI + +A IF+ + FA Y FNKSHAA YAVISYQTA Sbjct: 707 EMERKNFIYGNEEKKIKGCIKNGIDEKVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF+AAS+T DN K+ ++ I+I+PP VN F V + I + Sbjct: 767 YLKYYYPKEFMAASLTSVSDNPAKLSEYMGSLTDMGIKILPPDVNLGEGAFSVDKDGIRF 826 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LA IKGVG A ++ + + +LE+F +R+ K LN+R +ES + AGALD Sbjct: 827 GLATIKGVGKAVADVLVRERTLNGRYLTLENFINRLPQKDLNKRSIESFIKAGALDGLAG 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954 +R + + + + + K + F D + + Sbjct: 887 NRHEKILNAELLIDKKSKESKAVIPGQISFFDVVDKDDRDSFVSEMIHIDEYKKEELLKY 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-------GNNIRLAAMVVSKQQK 1007 E VLG Y SGHPL+ Y +L K + G + + ++ ++ Sbjct: 947 EMEVLGMYVSGHPLEEYITMLEKYTDVRSIDFYPDEDGNILIESGRKVVVGGLLSEVNKR 1006 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG + T + E FP Sbjct: 1007 FTKKGDMMAICTLEDMYGRIELVVFP 1032 >gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573] gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573] Length = 1159 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + + +L GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +ELP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAIEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K+ Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDTRSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|82523671|emb|CAI78453.1| DNA polymerase III, alpha subunit [uncultured candidate division WS3 bacterium] Length = 1160 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 389/1035 (37%), Positives = 592/1035 (57%), Gaps = 27/1035 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL HS YSLL+GA ++ ++ + + PA+AITD ++F A+EF +A GI+ Sbjct: 4 SDFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREHGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + + + + ++LL+ AEGY+ L++L S Y +D Sbjct: 64 PIIGMEAYVTPGSHAEKP--AGKGMESYSHLLLLIRNAEGYRNLMKLSSASY-VDGFYYK 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187 R+ L++ G +GL+ T G + + A + ++ ++FGD +Y+ + Sbjct: 121 PRVDKELLRKYG-DGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVH 179 Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + Q V+L +PLVA N+ ++ E AHDVL+ + + + +R Sbjct: 180 NHGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRM 239 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+ + Y+K+ EM +F D P A ENT+E+A +C+ L +P F + Sbjct: 240 RMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQGYT--- 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L GLE + R EL++I +M F+GYFLIV DFI Sbjct: 297 DAAAHLEALTREGLEE-------RYETVTPEVEARAALELSMIGQMGFAGYFLIVHDFIH 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 A++ IPVGPGRGS A S+ +YAL IT++DPL F L+FERFLNP R SMPDFDIDFC + Sbjct: 350 EARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYE 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+E+I YV KYG E VAQIITFG++QA+AA+RDVGR L+ PYS+VDR+ K++P + Sbjct: 410 RRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNI 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+A + R +D +LL+ + LEGL RHAS HAAG++I + P+ Sbjct: 470 TLE-EALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 YR TQ+ M + + GL+KFDFLGL+TLT++ +L + + RG+ + IP D Sbjct: 529 YR-SNKGEITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAPDRIPLD 587 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D ETY LL T T+GIFQ+ESSGMR L ++P+ +ED+ A+ +L+RPGP+ + + Y Sbjct: 588 DPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVDDYV 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G++K+ IHP + P+L+ET GV+ YQEQVMQI+ L+G+S+S+ADVL AM KK+ Sbjct: 648 KRKHGRQKVSYIHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLLNAMRKKVV 707 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E+M Q+E F++G +NGIS+ IAV +F+ + F+ YGFNK H+A YAV++ +TA++KTH Sbjct: 708 EQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAVRTAYLKTH 767 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAA 841 + EF+AA++T EMDN +++ + R+ I+++PP VN V+F+ I + L+A Sbjct: 768 FAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRGDIQFGLSA 827 Query: 842 IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG R ++ A F+ + D SRVD + +NRRVLESLV AGALD R Q Sbjct: 828 VKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALDGLHGHRAQ 887 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 +++ Q +++R + ++ + G+ L + + V E+ Sbjct: 888 QYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDGVALAKEKE 947 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 VLG Y SGHPL Y+ L + + +RL ++ + RKG ++ + Sbjct: 948 VLGMYVSGHPLARYEKELSTFATATTMDLAEMVDDEPVRLGGIITHVKTTADRKGEQMAF 1007 Query: 1018 VTFSEPAKEYEANFF 1032 VT + E F Sbjct: 1008 VTLEDFTGSVELVVF 1022 >gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A] Length = 1190 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 41 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 101 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 161 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 220 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 279 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 280 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 340 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 400 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 460 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 520 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 580 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 640 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 700 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 760 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 820 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 880 IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 940 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 998 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 999 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1059 LSDASGQFEAVLF 1071 >gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus 2308] gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold nucleic acid binding domain:DNA polymerase III alpha sub [Brucella melitensis biovar Abortus 2308] gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19] gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038] gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str. 86/8/59] Length = 1163 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + F ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPEALENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|168204460|ref|ZP_02630465.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str. JGS1987] gi|170664100|gb|EDT16783.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str. JGS1987] Length = 1192 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +N +VLLV +GY+ L+++VS + + R Sbjct: 66 LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I +L+E +EG+I L+ G + +A + A + ++ F D Y+ LQ H Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +F +PEALENT++IA C+F + H LP+F E E Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296 Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352 LR GL RL + G + + + +RL++EL VI +M Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++V Sbjct: 417 VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+ Sbjct: 477 DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591 VI +PL + VP+ ++ + VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + Sbjct: 536 VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RGV +DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYR Sbjct: 594 RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D Sbjct: 654 PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713 Query: 712 VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759 ++RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 714 LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 774 AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 +N F V + I + + AIK VG +I ++ F SL DFC+++D +N Sbjct: 834 DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R +ESL+ AG D R QLL + I K + ++F E+ + Sbjct: 894 KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988 +I N E+ + G Y SGHPLD Y+ L++ E+ + Sbjct: 954 EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013 Query: 989 -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ + +K TR + + + + E FP Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071 >gi|312897946|ref|ZP_07757359.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359] gi|310620980|gb|EFQ04527.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359] Length = 1158 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 378/1033 (36%), Positives = 572/1033 (55%), Gaps = 29/1033 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSL +G + ++ + PA+A+TD N++ + + A GI+PI Sbjct: 4 FVHLHNHTQYSLFDGLTRIPEMVKRAKDLGMPAVAVTDHGNMYGLIHLYKAAKKEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 +GC++ + + ++ + + ++LL GYQ L+++VS+ ++ + Sbjct: 64 LGCEIYMTRGSRFEQKSKER-----LCHLILLAKDFHGYQNLVKIVSKAFVDGENSYHRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R L++ EGLI L+ G + + + A + L F LFG D Y+ +Q Sbjct: 119 RADFDLLEQYH-EGLIALSACIEGQVQQDILNGNEMQARQTLERFISLFGKDDFYLEIQN 177 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R A + L LVATN+ +L ++D A +V + ++ + + + R Sbjct: 178 HGLAEEREVRRVFKDWAEEYGLKLVATNDFHYLDKDDAPAQEVKLCISTGSTLDDPNHFR 237 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + + R EM +F DLPEAL+ T+EIA +C+ + LP+F + + Sbjct: 238 FSNNEFYMKSREEMEKLFPDLPEALDTTLEIADKCNVEISFDERHLPQFPVPDGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +E+ LR R+RLD+EL VI M F YFLIV D++++ Sbjct: 294 DESYLRKLCEE-------ALPTRYSVITDAVRERLDYELGVINAMGFPSYFLIVWDYVKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC + Sbjct: 347 ARDHKIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERITMPDIDMDFCYEN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +I YV KYG + VAQIITFG+L A+A LRDVGR L MP S+V+R+ K +PN+ Sbjct: 407 RSRIIDYVTRKYGKDHVAQIITFGTLAARAVLRDVGRVLDMPLSEVNRIMKTVPNELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + FR+ V RL++ ++LEGL RH+STHAAG+VI P+ VPM Sbjct: 467 LDKA-LQTSKEFRKDYETKAEVRRLVDFGKRLEGLVRHSSTHAAGVVISAAPVDDYVPMQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 + TQ++ +E+ GL+K DFLGL+TLT++ ++ + + D+ I DD Sbjct: 526 Y-SKEGYLTTQYDKDLVEELGLLKMDFLGLRTLTVIGDAVAMINRNYGIDLDIDKISLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T LLT T G+FQ+ES G+ ++ + P E +I LV+LYRPGP+ + + + Sbjct: 585 EATCRLLTEGDTAGVFQMESQGITNLVKELAPKHFEHMIPLVALYRPGPLGSGMVEDFIK 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 +G++K+ +HPL++P+LK+T GVI+YQEQVMQIA + G+SL EAD+LRRAMGKK + Sbjct: 645 GSHGEKKVTYLHPLLEPILKDTYGVILYQEQVMQIASAMGGFSLGEADLLRRAMGKKKEG 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+ F+ G KN I IA +F+L+ FA YGFNKSH+AAYA +++QTA++K HY Sbjct: 705 VLKAQRAHFLEGTRKNHIDDDIANKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+AA+MT + +V KI + + ++ ++ ++ P VN F V I + LA IK Sbjct: 765 CAEFMAATMTSMISDVAKISYYAAECKRHHVPVLSPDVNESESVFSVQGGNIRFGLAGIK 824 Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I+EA D PF S EDFCSRVDS+ +NRR LESL+ GA+D FG R QL+ Sbjct: 825 SVGENAIRTILEARKKDGPFTSFEDFCSRVDSRIVNRRGLESLIQCGAMDSFGKKRSQLM 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD K+ + +F S + S+R E+ GFY Sbjct: 885 AVLDQAMSMGALRRKDNESGQMGLFDDVVSDVSTDLVYPDMEEYPLSMRLAMEKEYDGFY 944 Query: 963 FSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FSGHPLD Y ++ K+ Y+E G I + ++ + ++ T++ + +T Sbjct: 945 FSGHPLDAYTEVMNKLTPLAVLYDEEARGYDGKMITVGGLITAVRRVTTKRNDAMAIITV 1004 Query: 1021 SEPAKEYEANFFP 1033 + FP Sbjct: 1005 EDFTHTVTVVVFP 1017 >gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603] gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603] Length = 1159 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + + +L GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +ELP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K+ Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya] Length = 1163 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 588/1033 (56%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL+VHS+YSLLEGAL L I+ + AD+ PAIA+TDTNNLF ALEF+QKA Sbjct: 14 SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQLD+ D+ + + + +VL+ +T GY ++ LVSR +L Sbjct: 74 GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +E +I LTGG GPI R+F + + A RL K+ FG+RLYV Sbjct: 134 AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQR GYDR E+ V+LAY +LPLVATN + FL ED+EAHD L+A+A ++S D Sbjct: 193 ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R R+TPDH LK+R+EM +F+DLPE+LENTVEIA RCS+ Q PILPRF + D Sbjct: 253 RRRLTPDHCLKSRAEMAELFADLPESLENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E +EL +A GL+ RL +A+GY + Y +RL++E+ +I RMKF GYFLIVAD Sbjct: 313 AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 373 FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P + Sbjct: 433 CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PA+PVS QAI + + E R + V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 493 PANPVSLAQAIESEPKINEEREKESVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A++G+ +DLS + Sbjct: 553 LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI Y Sbjct: 613 PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 673 NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 +EEMDKQ+ RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK Sbjct: 733 REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEFLAASMT +M N +K+ F ++A + I+++PPSV T F+VG+ +I+YSLAA Sbjct: 793 HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI++ A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG R + Sbjct: 853 IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +D I +AQ ++N + +IF G + + L + S E + +GF Sbjct: 913 CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971 Query: 962 YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ +L +M ++ + + A RG + RLA V ++Q++KTR G+++G V Sbjct: 972 YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031 Query: 1020 FSEPAKEYEANFF 1032 S+ + ++EA F Sbjct: 1032 LSDASGQFEAVLF 1044 >gi|254520595|ref|ZP_05132651.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA] gi|226914344|gb|EEH99545.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA] Length = 1187 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 376/1075 (34%), Positives = 589/1075 (54%), Gaps = 61/1075 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F HL +H+ YSLL+G+ + I+ + +IAITD ++ + F ++A GI Sbjct: 5 SKKFTHLHLHTEYSLLDGSGKIKKIISRAKELGMDSIAITDHGVMYGCVSFYKEAIEQGI 64 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC++ + + N + + +VLLV EGY+ L+E+VS+ + Sbjct: 65 KPILGCEIYVAAKSMDIKINDKEN---STHHLVLLVKNEEGYKNLMEIVSQASIRG-FYY 120 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ +L+ ++GLI L+ G + ++ + A++ L +K +F D Y+ +Q Sbjct: 121 KPRVDHDFLRS-HSDGLIALSACLGGEVQSWHLKDNYEKAKEVALLYKDIFKDGFYLEIQ 179 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ ++L+ +PL+ATN+ ++++ D E+HDVLM + + +R Sbjct: 180 NHGMDEQRKVIEGNIKLSKETGIPLIATNDVHYINQRDSESHDVLMCIQTGKTIDDPNRR 239 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YLK+ +M +FS +PEALENT++IA C+F + H LP+F E Sbjct: 240 RYPSDQFYLKSPEQMWDMFSHIPEALENTIKIAEECNFDYEFHVSKLPKFPVPEG----I 295 Query: 306 EEENELRNKAVAGLEVRLA------------QGAIAKGYHAQD---YRQRLDFELNVIAR 350 E L+N +GL R + + ++ Y +RL++EL+VI + Sbjct: 296 EPYEYLKNVCYSGLIERYEVFKEFLNRPLNVEELVDYYKTNEEACGYIERLEYELSVIKQ 355 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M + YFLI DFI+++ +N IP GPGRGS AGS+ AY L IT IDP+++SLLFERFLNP Sbjct: 356 MGYVDYFLITWDFIRFSNENGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLLFERFLNP 415 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD D DFC +RR EVI YV KYG V+QIITFG++ +A +RDVGRA+ Y+ Sbjct: 416 ERVSMPDIDSDFCYERRQEVIDYVVEKYGINNVSQIITFGTMAPRACIRDVGRAMNYSYA 475 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 +VDR+ K+IP + + + + A + V L+++S+ LEGL RH+STHAA Sbjct: 476 EVDRIAKMIPTMLGITIDKA-LEINPELKAAYNNEERVKALIDVSKDLEGLPRHSSTHAA 534 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI +PL + VP+ R+ D V QF+M +E+ GL+K DFLGL+TLT++ ++ + Sbjct: 535 GVVIASKPLVEYVPLQRN--EDSIVAQFDMTTLEELGLLKMDFLGLRTLTVMNDAVKMIK 592 Query: 591 QRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + + ++L I F+D + Y+++ T G+FQLES GM ++ ++PDC+EDIIA +SL Sbjct: 593 ENQGIDINLDKINFEDKDVYNMIGEGKTAGVFQLESPGMTSFMKELKPDCLEDIIAGISL 652 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+ I Y K +K+ P ++ +L T GV++YQEQVM+I + L+GYS+ Sbjct: 653 YRPGPMGEIPRYVECKQNPDKVEYEVPELEDILNVTYGVMVYQEQVMEIVRKLAGYSMGR 712 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELLAKFA 757 +D++RRAM KK + M+++++ FI G +NGIS+ A IF+ + FA Sbjct: 713 SDLVRRAMSKKKHKVMEEERKNFIYGVVDDNGNIEVPGCKRNGISEEAANKIFDQMMDFA 772 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAAAYAVI YQTA++ +YPVE +AA + M EK+ + A IQ++ Sbjct: 773 SYAFNKSHAAAYAVIGYQTAYLMKYYPVETIAAMLNSVMGTSEKVAHYINFAESLGIQVL 832 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP +N F V ++I + LAAIK VG I+E+ + F+SL DF +++D Sbjct: 833 PPDINESYSKFTVKGDKIIFGLAAIKNVGYNVVETIVESRNNKGEFESLMDFINKIDLSS 892 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +N+R +ESL+ AGALDCF R +LL + + K + ++F E+ Sbjct: 893 VNKRAIESLIKAGALDCFDVFRSKLLAVYEKLMDSVSSERKRNIDGQISLFGMEEEIELP 952 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE------------ 984 +I E+ + G Y SGHPLD Y L+ + Sbjct: 953 EINYPNIKEFAKKNILAMEKEMTGLYLSGHPLDEYADSLKVQTTTNIDKVYKSYEIISDT 1012 Query: 985 ----ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + L ++ QK TR + + ++ + E FP Sbjct: 1013 FNQTDLPEDIIHDEERVILGGIIAESNQKITRSNTMMAFLKLEDLTGIIEVIVFP 1067 >gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451] gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451] Length = 1159 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + + +L GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +ELP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAIEDFLVMKSREGLEERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K+ Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|220904502|ref|YP_002479814.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868801|gb|ACL49136.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1160 Score = 800 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 418/1039 (40%), Positives = 610/1039 (58%), Gaps = 24/1039 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ + ++ + PA AITD NLF A F Q GI Sbjct: 2 SDFVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGIN 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC++ + K T+ ++LL GY L++LVS +L D Sbjct: 62 PIFGCEVYVCHDHTDKKTDSPLAR--RRHHLILLAQNKTGYHNLVKLVSHGFL-DGFYYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L++ +EGLI L+ +G I RA + +A K + ++ +R Y+ LQ Sbjct: 119 PRVDKGLLRKY-SEGLICLSACIAGEIPRAILADDMDLARKLTHEYADIYPNRFYLELQS 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + + ++ LA T LPLVATN+ +L+ +D EAH+VL+ + T + R + Sbjct: 178 NGLKEQEKANAGLIDLAETCNLPLVATNDCHYLNADDAEAHEVLLCIQTQTTMDDPKRMQ 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ EM F +PEAL NT IA C+ L P + E + Sbjct: 238 FGTHELYYKSIEEMEKSFGHVPEALANTARIAEACNVELDFGNHYFPVYQLPEGASM--- 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+E R A GLE RL + Q YR RL +EL VI M F YFLIV +FI W Sbjct: 295 -ESEFRRLAEEGLEKRLVNHPDRDQLNPQTYRDRLQYELRVILEMGFPSYFLIVQEFINW 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N+IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+S+PD D+DFC+ R Sbjct: 354 AKNNDIPVGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERR 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VI+++ YG VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P D Sbjct: 414 RGDVIKHMVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMT 473 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + L D V LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y Sbjct: 474 IK-KALESEPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMKEYLPLY 532 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 R + VTQF+ EKAGL+KFDFLGLKT+TL+Q +LD + Q +L +P D Sbjct: 533 LGKRGE-LVTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQAPPNLDNLPLTD 591 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L T G+FQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + Sbjct: 592 AETYELYARGETDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIK 651 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ ++ H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E Sbjct: 652 RKHGQVPVIYPHESLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAE 711 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M K++ F++GA KN IS+ A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 712 AMAKERVTFVAGAQKNNISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHY 771 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 VEF+AA +T EM N +K+ K+ + +I ++ PSVN +F + ++ + L IK Sbjct: 772 KVEFMAALLTSEMGNQDKLLKYVSCCKDMDIDVVQPSVNRSQREFTAHEGKVVFGLGGIK 831 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I+EA ++ F SL D C RV+ +K+ +RVLESL+ GA DCFG +R +L Sbjct: 832 NVGDEAIREIVEARQQEEEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAML 891 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKFSVENSSVRFENE 955 SLD + AQ K++++ ++ A S + E Sbjct: 892 ASLDLVVARAQRKAKDKSSNQVSLLAMAPVAESAPQPGIGIDCAEAATPEMADEDKLRAE 951 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014 + LGF+ + HPL Y +R++G+ E++ G +R A +V S ++ T+ KG R Sbjct: 952 KDALGFFLTSHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTSVREVITKSKGER 1011 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + E FFP Sbjct: 1012 MAFAAVEDLTGHAEVTFFP 1030 >gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586] gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586] Length = 1159 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 427/1048 (40%), Positives = 619/1048 (59%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + +L GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ Sbjct: 110 VQHQPVLDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +ELP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|51245515|ref|YP_065399.1| DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54] gi|50876552|emb|CAG36392.1| related to DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54] Length = 1199 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 418/1041 (40%), Positives = 627/1041 (60%), Gaps = 20/1041 (1%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S F HL VH+ YSLL+GA+ L +++DK ++AITD ++ ALEF KA A Sbjct: 23 PMSAGFTHLHVHTQYSLLDGAIRLPDLIDKCKEFGMDSVAITDHGAMYGALEFYTKAKKA 82 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PI+G +L I D M Q K T IVLL GYQ L+++ S D Sbjct: 83 GIKPIVGSELYIAPGD---MREQKKINGQTAYHIVLLAMNKTGYQNLMKMASIA-QSDGF 138 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI ++ LQE EG+I LT G + A K+ +FGDRLY Sbjct: 139 YYKPRIDMAVLQEY-NEGIIALTACLHGQVPYLIMKGDMDGARKKAQELHDIFGDRLYFE 197 Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ + ++ + + LA + LVATN+ +L+ ++ AH+VL+ + ++ + Sbjct: 198 LQENSIAEQQPVNAGLKILAKEMGVKLVATNDCHYLNRQEAHAHEVLLCIQMGKTINDTN 257 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + + Y K+ EM F PEA+ +T EIA RC+ L P F E + + Sbjct: 258 RFRFSSDEFYFKSPKEMERAFHHCPEAIASTQEIADRCNLELTFDDYYFPNFPVPEGESL 317 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E A G+ + Y+ RL+ E++VI M F GYFLIVADF Sbjct: 318 STMFTTACWEGLETRFEEMRALGSYKDN-TEKTYKARLEMEIDVINTMGFPGYFLIVADF 376 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK +IPVGPGRGSGAGS+ AYA+ IT+IDP+ + L+FERFLN +R SMPDFDIDFC Sbjct: 377 INWAKSKDIPVGPGRGSGAGSIAAYAMKITNIDPMPYGLIFERFLNIERKSMPDFDIDFC 436 Query: 424 QDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 QDRR EVI YV+ KY G E VAQIIT+GS++A+ +RDVGRAL +P+++VDR+ KL+P+ Sbjct: 437 QDRRGEVIDYVRRKYGGAEHVAQIITYGSMKARGVIRDVGRALDIPFTEVDRIAKLVPDQ 496 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+A++ + +EA DP + L+ +S+ LEGL RH S HAAG+VI P++ Sbjct: 497 LKMTLL-KALAEEPKLQEAADNDPQIQELISVSKTLEGLARHTSVHAAGVVISPEPMTHY 555 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 +P R +D VTQ++MK E GLIKFDFLGLKTLT++ K++ + + + +++ I Sbjct: 556 LPTCRGGEADERVTQYDMKHTEMTGLIKFDFLGLKTLTVIDKAVKHVHADKKIPLNIDAI 615 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659 P DD +T+ LL LG+FQLES GMR+ L M P+ D+IALV+LYRPGP+D+ + Sbjct: 616 PMDDPKTFDLLCRGDALGVFQLESEGMRELLVKMAPEQFSDLIALVALYRPGPLDSGMVD 675 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + K+G+ + P + P+L+ET GVI+YQEQVM+IA +L+ YSL +AD+LRRAMGK Sbjct: 676 DFVETKHGRAEANYPLPQLKPVLEETYGVIVYQEQVMKIASILANYSLGDADILRRAMGK 735 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KI MD++K +F+ GA KN + A +F+L+AKFA YGFNKSH+AAYA++SYQTA++ Sbjct: 736 KIAAVMDEEKVKFMEGAEKNEVPLDKAEYVFDLMAKFAGYGFNKSHSAAYALVSYQTAYL 795 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K H+P +F+AA ++ +M+N +K+ ++ + ++ +I+++PP +N DF V ++RI + + Sbjct: 796 KAHHPAQFMAALLSCDMNNTDKVVRYINECKEQHIEVLPPDINESFKDFTVINDRIRFGM 855 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+K VG I+E AD P+ S+ DFC+RVDS+K+N RV+ESLV +G+ D GY R Sbjct: 856 AAVKNVGGAALDSIIEERQADGPYTSISDFCNRVDSRKVNSRVIESLVKSGSFDSLGYKR 915 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVRF 952 Q ++ L+ + A+ V++++ + ++FA + + K + + + + Sbjct: 916 SQFIEVLEKAMEQAKAVQRDKQSGQISLFAVAQPSAGQKDQEVNSLHMPDMEEWSDKQKL 975 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ +GFY +GHPLD P L+ + + V +R+ +V + ++ +++KG Sbjct: 976 LFEKETVGFYITGHPLDDVMPELKTIIDAQIHDLVDKDEDQAVRIGGLVRTYKKHRSQKG 1035 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++T + + E FP Sbjct: 1036 DAMAFITIEDIFEAVEVVVFP 1056 >gi|182624555|ref|ZP_02952338.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str. JGS1721] gi|177910363|gb|EDT72744.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str. JGS1721] Length = 1192 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS YSLL+G+ + ++ + +IA+TD ++ ++ ++A A GI+PI Sbjct: 6 FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +N +VLLV +GY+ L+++VS + + R Sbjct: 66 LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I +L+E +EG+I L+ G + +A + A + ++ F D Y+ LQ H Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ + ++V +QLA +PLVATN+ ++++ED +AHD+LM + V +R R Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +F +PEALENT++IA C+F + H LP+F E E Sbjct: 241 SDQFYLKSPEEMWDMFDYVPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296 Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352 LR GL RL + G + + +RL++EL VI +M Sbjct: 297 EYLRKTCFDGLIDRLEELRPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DFI++A N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC + R VI YV KYGH+ V+QIITFG++ A+A +RDVGRA+ Y++V Sbjct: 417 VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 DR+ K IP + +A+ + + + V L+++S++LEGL RH+STHAAG+ Sbjct: 477 DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591 VI +PL + VP+ ++ + VTQF+M +E+ GL+K DFLGL+TLT+++ ++D + Sbjct: 536 VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RGV++DL + FDD E Y ++ T+G+FQLES+GM ++ ++PDC+EDIIA +SLYR Sbjct: 594 RGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y + K + + I P ++ +L T GV++YQEQVM+I + L+GYS+ +D Sbjct: 654 PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713 Query: 712 VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759 ++RRAM KK + M+++++ FI G +NGIS A IF+ + FA Y Sbjct: 714 LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAVI +QTA++ +YPVEFLAA + M N +K+ ++ + A + IQ++PP Sbjct: 774 AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 +N F V + I + + AIK VG +I ++ F SL DFC+++D +N Sbjct: 834 DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R +ESL+ AG D R QLL + I K + ++F E+ + Sbjct: 894 KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988 +I N E+ + G Y SGHPLD Y+ L++ E+ + Sbjct: 954 EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013 Query: 989 -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ + +K TR + + + + E FP Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071 >gi|303328214|ref|ZP_07358652.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3] gi|302861544|gb|EFL84480.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3] Length = 1159 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 407/1039 (39%), Positives = 600/1039 (57%), Gaps = 26/1039 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ + ++ + PA AITD N+F A F GI+ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRIKDLCARAKDYGMPACAITDHGNMFGAAYFYAACKDFGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI GC++ + K + + ++LL GY L++LVS +L D Sbjct: 62 PIFGCEVYVCHDHTDKTSELARRR----HHLILLAQNELGYHNLVKLVSHGFL-DGFYYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L+ EGL L+ +G I RA A + ++ R Y+ LQ Sbjct: 117 PRVDKELLRRY-AEGLTCLSACIAGEIPRAILAKDMDKALSLTREYADIYPGRFYLELQS 175 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + ++++A T +LPLVATN+ +L+ +D +AH+VL+ + T + R R Sbjct: 176 NGLAEQEVVNNALLEIAETADLPLVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMR 235 Query: 248 VTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 EM F+ +PEAL NT+ IA C+ L P + E + Sbjct: 236 FETHELYYKSIEEMEKPFAHVPEALANTMRIAETCNVELDFGHHYFPVYQLPEGASM--- 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+E R A GLE RL + + YR+RL +EL VI M F GYFLIV +FI W Sbjct: 293 -ESEFRRLAEEGLERRLEKHPDRENIDPARYRERLQYELGVILEMGFPGYFLIVQEFINW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ R Sbjct: 352 AKNHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNNERVSLPDIDVDFCERR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VIR++ + YG VAQI TFG+++AK +RDVGRAL M +++ DR+ KL+P+D Sbjct: 412 RGDVIRHMVDTYGEGSVAQITTFGTMKAKGVVRDVGRALGMTFAETDRIAKLVPDDLKMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y Sbjct: 472 IK-KALDLEPDLRKLYEEDQQVRHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 R + VTQF+ EKAGL+KFDFLGLKT+TL+Q +LD + Q DL +P D Sbjct: 531 LGKRGE-LVTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQTPPDLDNLPLTD 589 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L T G+FQ+ESSGMRQ L ++P C ED+IA+++LYRPGP+ + +V + Sbjct: 590 AETYELYARGDTDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIK 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ +V H + L++T GVI+YQEQVMQIAQ+++ Y+L AD+LRRAMGKK E Sbjct: 650 RKHGQVPVVYPHDSLTECLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAE 709 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M K++ F++GA KNGI+K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 710 AMAKERVTFVAGAEKNGIAKEKANEIFDLMEKFAEYGFNKSHSAAYALISYFTAYLKVHY 769 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 VEF+AA +T EM N +K+ K+ + I ++ PSVN +F ++ + L IK Sbjct: 770 KVEFMAALLTSEMGNQDKLLKYVSCCKDMGIDVVQPSVNQSQREFTAHGGQVVFGLGGIK 829 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I+E + + SL D C RV+ +K+ +RVLESL+ GA DCF SR +L Sbjct: 830 NVGDEAIREIVEGRKEGGDYISLLDLCCRVNLRKVTKRVLESLIKGGACDCFNVSRAGML 889 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------KITLEKFSVENSSVRFENE 955 +L+ + AQ K++++ ++ A + ++ E Sbjct: 890 AALEIVVARAQKKAKDKSSNQVSLLAMAPVVEAAPQPGVGLDCPEATLPEMEDDLKLRAE 949 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014 + LGF+ + HPL Y +R++ + E++ G I A +V S ++ T+ KG R Sbjct: 950 KEALGFFLTSHPLQPYSREIRRLRLTTLEDARELFPGAEINCAVLVTSIKEVLTKSKGER 1009 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + +V + E FFP Sbjct: 1010 MAFVGVEDLTGHAEVTFFP 1028 >gi|167768149|ref|ZP_02440202.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1] gi|317499630|ref|ZP_07957892.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|167709673|gb|EDS20252.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1] gi|291560175|emb|CBL38975.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing bacterium SSC/2] gi|316893105|gb|EFV15325.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 1151 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 375/1046 (35%), Positives = 572/1046 (54%), Gaps = 39/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + ++ + +IAITD ++ ++F + A A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKELVHQAKELGMDSIAITDHGAMYGVIDFYRAAKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + +VLL GY L+++VSR + + Sbjct: 62 IIGCEIYVTTGSRFDK--EASQGDKRYYHLVLLAQNDTGYHNLMKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E EGLI L+ +G + N+ + A+ L + LFG D ++ LQ Sbjct: 119 RVDYEVLEEY-KEGLIALSACLAGEVATYIRENNYEKAKNTALRLQDLFGKDNFFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ + +++++ + LVATN+ + +ED EAHD+L+ + V +DR R Sbjct: 178 HGIPDQTKVNTALLKMSKETGIDLVATNDIHYTFKEDAEAHDILLCIQTGKKVQDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK+ EM +F EA+ENT +IA+RC+ + +P + E Sbjct: 238 YEGGQYYLKSPEEMQRLFPYAREAIENTGKIAKRCNVEIVFGEQKVPEYDVPEG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + GL+ R ++ R+RLD+EL I M + YFLIV DFI + Sbjct: 294 AVTYLNHLCEEGLKRRYPN-------ITKELRERLDYELKTIENMGYVDYFLIVWDFIHY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK++ I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKEHGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ Sbjct: 407 RQEVIDYVVRKYGKDQVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGISKMVPNELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R A D L+++S++LEGL RHAS HAAG+VIG + + VP+ Sbjct: 467 ID-KALKISKDLRNAYEQDEETHYLIDMSKRLEGLPRHASMHAAGVVIGKTAIDEYVPLA 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 + VTQF M IE+ GL+K DFLGL+TLT++Q + + ++ D++ I D Sbjct: 526 TGA-DNAAVTQFTMTTIEELGLLKMDFLGLRTLTVIQDAEKMVRRKVPDFDITKIDPTDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E Y ++ T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 585 EVYEMIGNGHTEGVFQLESSGMKSFMKELKPQNMEDIIAGISLYRPGPMDFIPRYIEGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E I ++ +L+ T G I+YQEQVMQI L+GY+L +D++RRAM KK + M Sbjct: 645 HQESIHYECEQMEEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKGDVMI 704 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F I G NGI + A I++ + FA Y FNKSHAAAYAV++Y+TA+ Sbjct: 705 KERQNFVYGNEEEGIPGCINNGIDEKTANQIWDEMLDFAKYAFNKSHAAAYAVVAYRTAY 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 ++ HYPVEF+AA +T + N KI ++ ++ I+I+PP +N F V I Y Sbjct: 765 LRCHYPVEFMAALLTSVLGNTNKISEYSYACKKLGIKILPPDINYGEGAFSVDHGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIK +G I+ + P+ +D R+ SK++N+R +E+L+ +GALDCF + Sbjct: 825 LTAIKSLGRPVIEAIIRERNLNGPYRDFKDLVERLSSKEINKRTVENLIKSGALDCFHVT 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + ++ Q KN ++ E+ S +I+ + E Sbjct: 885 RKQQMIVYASVIDSIQKERKNEIAGQMSLMDLLGEEDQQSFQISYPDVGEYEKEQKLAME 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ L + + + + ++ K Sbjct: 945 KEVLGIYVSGHPLEDDIERLERSVTAHTSDFVIDEETGKTKIHDRESCIIGGLISEMSVK 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+K + ++T + E FP Sbjct: 1005 LTKKNQNMAFITLEDLRGTVEVVVFP 1030 >gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223] gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223] Length = 1159 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 430/1044 (41%), Positives = 620/1044 (59%), Gaps = 37/1044 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A GI+ Sbjct: 4 PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L GY+ L L+S+ YL + Sbjct: 64 PIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +WL E EGLI+L+GG SG I RA + Q EK L ++ F D Y+ L R Sbjct: 114 PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D ++LA +ELP+VATN +F++EE +EAH++ +A+ + RP+ Sbjct: 173 TGRADEESYLHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P YL++ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 233 NYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPTEGMA 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLIV +F Sbjct: 288 IEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP Sbjct: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + IA + +E AD V L++ + LEG R+A HA G+VI ++ Sbjct: 468 GMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K+ + Sbjct: 527 PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVRI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + Sbjct: 587 EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646 Query: 659 VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 647 MVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ F V Sbjct: 767 VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L+ AG Sbjct: 827 DNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R ++ S+D+ + A + ++F + + + Sbjct: 887 ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPE 946 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ + Sbjct: 947 KVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG +T + + E + Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|218885238|ref|YP_002434559.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756192|gb|ACL07091.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1173 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 416/1037 (40%), Positives = 617/1037 (59%), Gaps = 24/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ L ++ K PA AITD NL+ A+ F GI+ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + K + + +VLL EGY L++LVS +L Sbjct: 62 PIIGCEVYVANDHTDKTSELARVR----HHLVLLARDNEGYHNLVKLVSHGFLHG-FHYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + L++ + G+ L+ +G + RA + A + ++ ++ Y+ LQ Sbjct: 117 PRVDMDLLRQY-SGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQS 175 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++LA LPLVATN+ +L D EAHDVL+ + V + R R Sbjct: 176 NGLKEQDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMR 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ EM F+ +P+A+ NT IA +C+ + + P + E Sbjct: 236 FETKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGM----T 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+E R + GL+ RL + Y +RL+ EL+VI +M F GYFLIV DFI W Sbjct: 292 LEDEFRRLSREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGS AGS+ A++L IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R Sbjct: 352 AKDNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV KYG + VAQI TFG ++AKA +RDVGRAL M +++ DR+ KL+P D Sbjct: 412 RTEVIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 V +AI + DP + +LL++S +LEGL RHASTHAAG+V+ DRP+ + +P+Y Sbjct: 472 VK-KAIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 R + VTQF+MK +EK GL+KFDFLGL+T+TL+Q SLD +A++ DL + DD Sbjct: 531 RG-KKGEIVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDD 589 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 ETY L + T GIFQ+ESSGMRQ L ++P C +D+IA+++LYRPGP+ + +V + Sbjct: 590 AETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIK 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + P ++ L++T GVI+YQEQVMQIAQ+ +GY+L AD+LRRAMGKK E Sbjct: 650 RKHGEVPVTYPLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAE 709 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM +Q+ +F+ GA KNG+ K A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+ Sbjct: 710 EMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHF 769 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF+AA +T EM N +K+ K+ + I ++ P+V +F V + I + L IK Sbjct: 770 PTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIK 829 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG R I++A + F SL D C RV+ +K+ +RVLESL+ GA DC G +R +L Sbjct: 830 NVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGML 889 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQ 956 +LDN+ AQ K++ + ++F + ++ + + E+ Sbjct: 890 AALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEK 949 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGF+ + HPL Y+ L ++ + EE+ G +++ A +V ++ T+KG+R+ Sbjct: 950 EALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGARMA 1009 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ + E FFP Sbjct: 1010 FLQVEDLTASGECVFFP 1026 >gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891] Length = 1159 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 416/1048 (39%), Positives = 609/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A + Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG Q + + +L + GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADF----------LMQSAEFGDELTRLTVLAADNTGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ +EG+I+L+GG SG I +A + + AE+ L ++ F DR Y+ Sbjct: 110 VQHQPVIDKEWLTEL-SEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA ++P+VATN + L E ++AH++ +A+ + Sbjct: 169 ELTRTGRADEETYLHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE L + +Y RL EL VI M F GYFLI Sbjct: 284 EGMEETEFLVKKSEEGLEDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E D + L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP D +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVAIESIPLVDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + ++++PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDEEGAIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R L+ SL++ K A + ++F + + K Sbjct: 883 IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVE 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14] gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14] Length = 1168 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 530/1040 (50%), Positives = 704/1040 (67%), Gaps = 15/1040 (1%) Query: 1 LTQYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 ++Q L + FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS Sbjct: 1 MSQKLAAANAGFVHLHVHSAYSLLKGSIKIQKLAELAKADHQPALALTDTDNMFGALEFS 60 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 K GIQPI+GC+L +D D + IVLL + GY+ L+ L SR Sbjct: 61 DKVAGYGIQPIVGCELAVDFDD----QDPNARSALPFARIVLLATREAGYRNLMRLNSRA 116 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L Q+ I WL++ EGLI LTGG GP+ AF + S +A R +FG Sbjct: 117 FLESALHQTPHIKSGWLRDE-NEGLIALTGGPDGPVALAFNADHSALAIARCDQLAGVFG 175 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DRLYV LQRH +R E ++ LAY LPLVATN F + +DYEAHD L+ +A Sbjct: 176 DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFAASDDYEAHDALLCIAGGR 235 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +V++ DR ++TPDH K R+EM +F+D+PEAL +T+EIA RC+F PILP F Sbjct: 236 LVAETDRDQLTPDHRFKTRAEMAVLFADIPEALSSTIEIAERCAFRPLTRKPILPHFAVG 295 Query: 299 ECD---DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 D + +E ELR +A GL RLA +++G DY RL FEL+VI RM ++G Sbjct: 296 AGANAADAKSDEVAELRRQAEEGLANRLAVHGLSQGMTEDDYSARLSFELDVITRMNYAG 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI+ AK IPVGPGRGSGAGS+ AY LTITD+DP+RF LLFERFLNP+R+SM Sbjct: 356 YFLIVADFIKHAKSEGIPVGPGRGSGAGSLVAYVLTITDLDPIRFGLLFERFLNPERVSM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L Sbjct: 416 PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KL+P +PA P++ AIA + + + R DP V R +I+Q+LEGL RHASTHAAGIVI Sbjct: 476 TKLVPQNPAAPITLAAAIASEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V Sbjct: 536 GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNV 595 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL+ +P DD E+Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP Sbjct: 596 HIDLATLPLDDAESYQMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NI Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR Sbjct: 656 MANIPTYCARKHGEEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKI+ EM+KQ F++G+ KNG+ K A IFELLAKFADYGFNKSHAAAYA++SY Sbjct: 716 RAMGKKIRAEMEKQHAIFVAGSVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSY 775 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA+MK HYP+EFLAASMTL+M N +K+ +F +A++ I++ PS+N F+V Sbjct: 776 QTAYMKAHYPIEFLAASMTLDMSNTDKLSEFRSEAQRLEIKVEAPSINRSGATFEVSGGV 835 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y+LAA+KGVG I+EA + F SL DF +RV + +N+RV+ESL AGA D F Sbjct: 836 ICYALAALKGVGAQAVEQIVEARKNGLFTSLADFAARVPPRAVNKRVIESLAAAGAFDAF 895 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R ++ + I Q + ++F + I L + S R + Sbjct: 896 EPNRARVFAGAEAILAACQRSHEAAMLGQNDMFGGMAD--APAIMLPQAEPWLPSDRLKR 953 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012 E +GF+ SGHPLD Y L+++ ++ + E A G R+AA VVS+ +++T+ G Sbjct: 954 EYDAVGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGRVAATVVSRMERRTKTG 1013 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +++G + S+P +EA F Sbjct: 1014 NKMGIIGLSDPTGHFEAVLF 1033 >gi|226323536|ref|ZP_03799054.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758] gi|225208220|gb|EEG90574.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758] Length = 1159 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 379/1046 (36%), Positives = 574/1046 (54%), Gaps = 38/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ A AITD ++ ++F + A AAGI P+ Sbjct: 3 FAHLHVHTEYSLLDGSNKIKEYVARVKELGMTAAAITDHGVMYGVIDFYRAARAAGINPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + T G+ +VLL GY L+++VSR + + R Sbjct: 63 LGCEVYVAPGSRFDKTAVGR-DEDRYYHLVLLAENNTGYANLMKIVSRAFT-EGYYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ EG+I L+ +G + R + +K L ++++FG ++ LQ H Sbjct: 121 VDYELLETYH-EGIIALSACLAGEVQRNLARGMYEEGKKAALHYEQIFGKGNFFLELQDH 179 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++L+ + LVATN+ + ED + HD+L+ + ++ +DR R Sbjct: 180 GIPEQRTVNQQLMRLSQEIGIDLVATNDVHYTYAEDEKPHDILLCLQTGKKLADEDRMRY 239 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K++ EM ++F PEALENT +IA RC ++ LP+F E Sbjct: 240 EGGQYYVKSKEEMAALFPYAPEALENTQKIADRCHVEIEFGVTKLPKFDVPEGF----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GL+ R + +RL++EL VI M + YFLIV DFI +A Sbjct: 296 WEYLNKLCFDGLKRRYGEDPDPALV------ERLNYELGVIKSMGYVDYFLIVWDFIHFA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I VGPGRGS AGS+ AY L IT+IDP+R+ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 350 KSNGIMVGPGRGSAAGSIVAYTLAITNIDPIRYQLLFERFLNPERVSMPDIDVDFCFERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV QI+TFG+LQA+ LRDVGR + +PY+ VD + K+IP + + Sbjct: 410 QEVIDYVVRKYGKDRVVQIVTFGTLQARGVLRDVGRVMDLPYAFVDSIAKMIPKELNITL 469 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +++ + ++ DP V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 470 D-KSLKMNHELKKLYDEDPQVKELIDMSKRLEGLPRHTSMHAAGVVISQKDVDEYVPLAL 528 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-PFDDH 606 + VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + ++ ++D Sbjct: 529 GA-DNNVVTQFTMTTLEELGLLKMDFLGLRTLTVIQDAIRLVEKSTGVKLVTEKLNYNDK 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + T T GIFQ+ES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 588 AVLDYIGTGKTDGIFQIESAGMKSFMKELRPQSLEDIIAGISLYRPGPMDFIPQYIKGKN 647 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E I P + P+L T G I+YQEQVMQI + L+GYSL +D++RRAM KK + M Sbjct: 648 HPELITYECPQLKPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLVRRAMSKKKGDVMQ 707 Query: 727 KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++++ F I G KNGI + +A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 708 RERQNFVYGNEEEGIPGCVKNGIDEKVANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ RQ I I+PP +N DF V + I Y Sbjct: 768 LKYYYPVEYMAALMTSVIDNPGKVAEYIYTCRQMGISILPPDINRGVGDFSVDNGNIRYG 827 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAAIKGVG I+ + F L+DF R+ K++N+R +E+ + +GA D + Sbjct: 828 LAAIKGVGRPVIEQIIRDREEHGTFRDLKDFLERLSGKEVNKRAVENFIKSGAFDSLKGT 887 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + I +KN ++F ++ ++TL E Sbjct: 888 RKQFMIIYVQIMDQVAQNKKNSLAGQMSLFDIVDDEQKKEFEVTLPDVGEYQKETMLAFE 947 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ RK + G+ + M+ SK K Sbjct: 948 KEVLGVYISGHPLEEYEEKWRKSISATTLDFQLDEETGRTKVRDGSREIIGGMITSKMIK 1007 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+K + ++T + E FP Sbjct: 1008 YTKKNQTMAFITVEDLLGTVEVVIFP 1033 >gi|327399548|ref|YP_004340417.1| DNA polymerase III subunit alpha [Hippea maritima DSM 10411] gi|327182177|gb|AEA34358.1| DNA polymerase III, alpha subunit [Hippea maritima DSM 10411] Length = 1133 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 403/1033 (39%), Positives = 612/1033 (59%), Gaps = 32/1033 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL HS YSLL+GA + ++++K PA+A+TD N+F ALEF + A + GI+P Sbjct: 2 AFVHLHNHSEYSLLDGASRIKHMVEKAKNSGMPAVALTDHGNMFGALEFYKTAKSNGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + I T I LL +GY+ ++ L S +L Sbjct: 62 ILGFEGYISP------TTLDDKQTKGNYHITLLAKNKKGYENIMYLCSMAFLK-GFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI + L+E +EG+I + G + N + A+K + +K++FG + ++ + R Sbjct: 115 RIDKNLLRE-HSEGIIAGSACLHGEVQLRLLDNDFEGAKKVVQEYKEIFGKENFFLEIMR 173 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ R + +++L + P+VATN+ +L++ED A D L+ V + + +DR + Sbjct: 174 HGLEDQQRIDKEIIRLGLETDTPIVATNDCHYLNKEDAIAQDALLCVQTNKHLDDQDRMK 233 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + + Y K EM+ +F D PE + N+ IA C+ L++ P + + D Sbjct: 234 MGSQEFYFKTEEEMLEVFKDNPEFVHNSKVIADMCNVELELGKLAPPHYRTPDGSD---- 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ LR A GLE + A + Y++RL+ EL +I +M FSGYFLIV DF+ + Sbjct: 290 EKEYLRRLAYKGLEEKTAGF---DNGKKELYKKRLEHELAIIEQMGFSGYFLIVWDFVNY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+N IPVGPGRGS AGS+ +Y++ ITDIDP++++LLFERFLNP+R++MPD D+DFC +R Sbjct: 347 AKRNGIPVGPGRGSAAGSLVSYSIGITDIDPIKYNLLFERFLNPERVTMPDIDVDFCAER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV+ KYG VAQ+ITFG++ AKA +RDV R + PY + DR+ K+I P Sbjct: 407 RDEVIHYVREKYGEYNVAQVITFGTMGAKAVVRDVARVMGFPYKEADRIAKMI---PNGE 463 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 AI +++ ++ D +V +L EIS+ LEG+ RHAS HAAG+VI P+ + P+Y Sbjct: 464 DLDGAIKSNTQLKQEIEKDDNVKKLFEISKTLEGVKRHASIHAAGVVISTEPIYKSCPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 + D QF+ ++E GLIKFDFLGLK LT++ ++ + D+S IP DD Sbjct: 524 KAPGEDTIAVQFSKDFLEDIGLIKFDFLGLKNLTVIDTTVKLIGN---GFDISKIPLDDK 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 ETY LL TLG+FQLESSGM++ + ++P ED+IALV+LYRPGP+ + + + +R Sbjct: 581 ETYKLLQKGDTLGVFQLESSGMQRLIMDLKPTVFEDLIALVALYRPGPLGSGMVQDFIDR 640 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GK+ I P ++ +LK+T G+I+YQEQVMQIA L+GYSL EAD+LRRAMGKK KE Sbjct: 641 KHGKKPIEYPLPELEGILKDTYGIILYQEQVMQIASKLAGYSLGEADILRRAMGKKKKEV 700 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+Q+ F+ A + G+SK A IF+L+AKFA+YGFNKSH+AAYA I+YQTA++K HYP Sbjct: 701 MDQQRGIFVKRAVERGVSKEKAEEIFDLMAKFAEYGFNKSHSAAYAYIAYQTAYLKAHYP 760 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840 F++A +T E +N + I K+ ++ + I ++PP +N DF V + I + + Sbjct: 761 AYFMSALLTSEKNNTDNIAKYIEECNRMKITVLPPDINDSFHDFAVAEKDGKKVIRFGFS 820 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VG +I+E + F+S+ DF R D++K+N++VLESL+ +G D +R Sbjct: 821 AIKNVGDAAIENIIEIRKESKFESIFDFLKRTDTRKVNKKVLESLIKSGCFDSLHQNRAT 880 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL S+D + + K K +F K L E E+ +LG Sbjct: 881 LLASVDVLLDWVSTNAKKANKKMVALFGSTKQ-EEAYPELIDVEELTQEKILEYERELLG 939 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F+ S +PL Y+ ++ + I E+ +T+ + +A + V+ ++ KT++ + V F Sbjct: 940 FFVSSNPLSKYENMVNAV-ITADSETASTVFDKEVVMAGIPVAIRKMKTKRKESMAIVKF 998 Query: 1021 SEPAKEYEANFFP 1033 + +EA FP Sbjct: 999 MDLKGTFEATVFP 1011 >gi|197303992|ref|ZP_03169024.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176] gi|197296960|gb|EDY31528.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176] Length = 1157 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 376/1047 (35%), Positives = 581/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREARKQGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL EGY+ L ++VS+ + ++ Sbjct: 62 ILGCEVYVAPNSRFDREVTGG--DDRYYHLVLLAENNEGYENLTKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ +G+I L+ +G + R + A+ R L ++++FG ++ LQ Sbjct: 119 RVDKELLRTYH-KGIIALSACLAGEVPRYLTKGMYEEAKDRALEYQEIFGKGNYFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++L+ + LVATN+ + +D +AHD+L+ + +S ++R R Sbjct: 178 HGIPDQQLVNQQLMKLSQETGIELVATNDVHYTYADDEKAHDILLCIQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM ++F +ALENT +IA RCS ++ LP++ E Sbjct: 238 YEGGQYYVKSEEEMAALFPYARQALENTQKIADRCSVEIEFGVTKLPKYDVPEG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ GL+ +Q+ + RL +EL+ I M + YFLIV DFI++ Sbjct: 294 SWEYLQKLCYEGLDQ-------RYRTPSQELKDRLAYELDTIRHMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT IDP+ + LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIHYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSIAKMIPQELGIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ +D +V L++++++LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 467 ID-KALQMNPELRKLYESDETVTHLIDMAKRLEGLPRHCSMHAAGVVICQKPVEEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ + + I ++D Sbjct: 526 RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVQLARKKQPDLQIDKIDYNDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + T T GIFQLES GM+ ++ +QP +ED+IA +SLYRPGP+D I Y KN Sbjct: 585 AVLDYIGTGKTEGIFQLESGGMKNFMKELQPHSLEDVIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK M+ Sbjct: 645 DRSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKAAVME 704 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTAW Sbjct: 705 KERKTFVYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT +DN K+ ++ RQ I+I+PP +N DF V I Y Sbjct: 765 LKYYYPVEYMAALMTSVIDNPTKVAEYIYVCRQMGIKILPPDINKGEADFSVDGGDIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGY 896 LAAIK +G R I+ + F +LEDF +R+ S++L N+R++E+L+ AGALD G Sbjct: 825 LAAIKSIGRPVIRAIVNDRKELGEFRNLEDFITRISSRELMNKRLVENLIKAGALDVLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I + Q +KN ++F E+ +I + Sbjct: 885 TRKQFMSIYIQIVDHMQQEKKNSMVGQMSLFDMVSEEQKEEFQIRMPDVGEYTKENLLGF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ RK+ + G + ++ K Sbjct: 945 EKEVLGVYVSGHPLESYEEEWRKVISATTADFQVDPEVGYTKVRDGAREIIGGIIAEKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KHTKTNQMMAFLTVEDLFGTVEVVVFP 1031 >gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53] gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 535/1035 (51%), Positives = 695/1035 (67%), Gaps = 13/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + D AD QPA+A+TDT+N+F ALEFS K Sbjct: 1 MSNA-GFVHLHVHSAYSLLKGSIKIGKLADLAKADHQPALALTDTDNMFGALEFSDKMAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GC+L ID D P+ IVLL S GY+ L++L SR +L Sbjct: 60 AGIQPIVGCELAIDFGDVDPTARNALAAGPS--RIVLLASRERGYRSLMKLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q I L WL + E LI L+GG GPI A + +AE R LFGDRLY+ Sbjct: 118 VNQVPHIKLDWLLDE-AEDLIALSGGPDGPISLAIAADQQALAETRCERLASLFGDRLYI 176 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ LAY LPLVATN F S +DYEAHD L+ +A ++++ Sbjct: 177 ELQRHGVDAERRVEPALIDLAYAKGLPLVATNEPYFASTDDYEAHDALLCIASGKLIAET 236 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301 DR ++TPDH K R+EM +F+DLPEAL +TVEIA RC+F + PILP F Sbjct: 237 DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPKTRKPILPFFTVGAGTGD 296 Query: 302 -DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D E ELR +A GL RL +A+G +DYR RL FEL+VI RMK++GYFLIV Sbjct: 297 TDAASLEAEELRVQAERGLAHRLEVHGLAQGVSEEDYRARLAFELDVITRMKYAGYFLIV 356 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+WAK+ IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDI Sbjct: 357 SDFIKWAKQQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDI 416 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P Sbjct: 417 DFCQDRRGEVITYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVP 476 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +PA PVS QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPL Sbjct: 477 QNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPL 536 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 S+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QRGV V L Sbjct: 537 SELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGVHVALP 596 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +T+ +L +G+FQLES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 597 TLPLDDPDTFTMLARGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIP 656 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGK Sbjct: 657 TYCARKHGDEEPEYLHPILEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGK 716 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KI+ EM+KQ+ F+ GA KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+M Sbjct: 717 KIRAEMEKQRAIFVDGAMKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYM 776 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+V D I+Y+L Sbjct: 777 KAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVADGTIFYAL 836 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A +KGVG I+ A F SL DF ++V+ + +N+RV+E L AGA D +R Sbjct: 837 AGLKGVGQQAVEQIVAARQGGAFTSLADFAAKVNPRAINKRVIECLAAAGAFDQINPNRA 896 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + + I Q + + ++F + I L + R E + Sbjct: 897 AVSGGAEAILAACQRHHEAQVVGQNDMFGGSAD--APSIMLPPLEAWLPAERLRREYDAI 954 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 955 GFFLSGHPLDDYAVALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGI 1014 Query: 1018 VTFSEPAKEYEANFF 1032 S+ +EA F Sbjct: 1015 FGLSDATGHFEAVLF 1029 >gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1175 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 581/1029 (56%), Positives = 752/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL + ++ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQIGKVVAHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ + +N + P + +VLL +T GY L+ LVSR+YL ++V Sbjct: 89 IGCQTALAFSGENSDGQRDRRRQGPDMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ +GLI L+GG GPI A + +AE RLLT K +FGDRLYV L R Sbjct: 149 HLTTEMMEGY-CDGLICLSGGPRGPIGTALKEDRRDLAEARLLTLKDMFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E + LAY HELPLVATN + F S +DY+AHD L+A+A +VV+ +R R++ Sbjct: 208 SGYDRVIEKSSIDLAYAHELPLVATNEAFFSSRDDYDAHDALIAIAEGSVVAADNRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ---KE 306 PD++L+++++M +F+DLPEA++NTVEIA RCS+ + PILPRF + D + Sbjct: 268 PDNFLRSQADMARLFADLPEAIDNTVEIALRCSYYPKNRNPILPRFTGGDVADNDAAVQA 327 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E +EL +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EADELARQAHEGLDARLAMHGPTAGYTVEQYRERLNFELGIITKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEREPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+++DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIEIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G+ K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVGKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV + F+VG+NRIYYSLAA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVTSSFRPFEVGENRIYYSLAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R ++ + Sbjct: 868 GDAAVEHIVAQRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRASMMAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQHDIFGASLGAQSQALNLPATEPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E A ++ RLA V SKQ++KTR G+++G + FS+ Sbjct: 988 HPLDEYKAALQKMRVQTWAEFSAAVKRGAAAGRLAGTVTSKQERKTRTGNKMGVIAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|307692527|ref|ZP_07634764.1| DNA polymerase III DnaE [Ruminococcaceae bacterium D16] Length = 1155 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 373/1050 (35%), Positives = 574/1050 (54%), Gaps = 43/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ +SLL+GA + ++ ++ Q A+AITD ++ ++F + AGI+P Sbjct: 2 SFVHLHLHTEFSLLDGACRIQKLVQRVKDLGQEAVAITDHGVMYGVIDFYRACKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + + +VLL EGY+ L +VS+ +L + Sbjct: 62 IIGCEVYVAPRGRTRFQ-KVHEYDAAFSHLVLLCRNEEGYRNLSYMVSQGFL-EGFYIKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 RI L L+E GLI L+ G I + A++ L ++LFG+ Y+ LQ Sbjct: 120 RIDLDLLRE-HCGGLIALSACLGGEIPKLLMAGDYDKAKEVALEMRELFGEDGYYLELQD 178 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++L +PLV TN++ +L ED E D+LM + V R + Sbjct: 179 HNIPAQKKVNEGILRLHEETGIPLVCTNDAHYLRREDAEMQDILMCIQMGKTVDDPGRMK 238 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + E ++ EAL+NT +IA+ C+ LP F E Sbjct: 239 FETQEFYVKSEEEMAAL-FPREALDNTAKIAQLCNVDFTFGKYHLPHFQLPEGWSDGY-- 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + G R +YR++LD+E+ +I +M F YFLIV+DFI +A Sbjct: 296 -AYFEKLCLDGFRWRYPD-------EPAEYRKQLDYEMAMIQKMGFVDYFLIVSDFIAYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGS AGS+ +Y L ITD+DP++++L FERFLNP+R++MPD DIDFC RR Sbjct: 348 KGHGIPVGPGRGSAAGSMVSYCLNITDLDPMKYNLYFERFLNPERVTMPDIDIDFCIRRR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485 EVI YV KYG + VAQI+TFG++ A+AA+RDVGR L MPY+ VD + K IP+ P H Sbjct: 408 QEVIDYVARKYGADHVAQIVTFGTMAARAAVRDVGRVLNMPYADVDVIAKQIPSGPGALH 467 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +A+ +E+ +D V +L++ + +EG+ R+ STHAAG+VI RP+S VP+ Sbjct: 468 ITLEEALKLSKPLKESYDSDYKVKKLIDTAMAIEGMPRNTSTHAAGVVITSRPVSDYVPL 527 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 DL VTQ+ M +E+ GL+K DFLGL+ LT+L ++ + ++ D+ IP DD Sbjct: 528 --AKNDDLVVTQYIMTTLEELGLLKMDFLGLRNLTVLDDAVKLVRRKEPDFDIHNIPEDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T+ +++ T G+FQ+ESSGM G++P IED+ A+V+LYRPGP+++I + + K Sbjct: 586 EATFRMISEGRTSGVFQMESSGMTGVCVGLKPHSIEDLTAIVALYRPGPMESIPRFISCK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N EK+ HP + P+L T G I+YQEQV+QI Q L GYSL +AD++RRAM KK +++ Sbjct: 646 NNPEKVTYKHPSLVPILSNTYGCIVYQEQVIQIFQQLGGYSLGQADMVRRAMSKKKVKDI 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K++E F+ G + NGI + +A +I++ + FA+Y FNK+HA YA+++YQTA Sbjct: 706 EKERETFLHGDPERNIAGCAANGIPENVAQSIYDEIYDFANYAFNKAHAVCYALVAYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W K H+P E++AA +T +D+ EK+ ++ + ++++IQ++PP VN +F V I + Sbjct: 766 WFKCHHPKEYMAALLTSVLDSSEKVAEYIAECKEWDIQLLPPDVNESETNFTVSPQGIRF 825 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA+KGVG + ++E PF DFC R+ LNRRVLESL+ AGA D G Sbjct: 826 GLAALKGVGRSVMNAMLEERVKHGPFTDFMDFCDRMFDHDLNRRVLESLIKAGAFDRMGC 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENI----FAHEKGTFSDKITLEKFSVENSSVRF 952 R QL+Q + K ++ + + L Sbjct: 886 RRSQLMQVFGQVLDGIAASRKRNVEGQMDLFGFGGGEGESAPLPTLHLPDIPEYTPQELM 945 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----------IRGNNIRLAAMVV 1002 E+ V G Y +GHP+D Y+ I RK G + G + +A ++ Sbjct: 946 TMEKEVTGLYLTGHPMDAYREIARKRGAVTIGSILNDFDGEEGPQRFRDGERVTVAGVIA 1005 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + TR + + +V + E F Sbjct: 1006 TYKTRTTRNNTLMAYVNLEDDTASMELLCF 1035 >gi|256827913|ref|YP_003156641.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM 4028] gi|256577089|gb|ACU88225.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM 4028] Length = 1151 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 413/1040 (39%), Positives = 601/1040 (57%), Gaps = 33/1040 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL HS YSLL+GA+ L ++ + + AITD NLF ++ F +A GI+ Sbjct: 2 SGFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG ++ I + +VLL GY L+++VS +L + Sbjct: 62 PIIGSEVYIADD-------MFERENKKRFHLVLLAQNLIGYHNLVKIVSAGFL-EGFYYK 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ +L+ +EGLI L+ G + A + A + + ++F DR Y+ LQ Sbjct: 114 PRVDKKYLRA-HSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQS 172 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++++LA LPLVATN+ +L ++DYEAHD+L+ V + S+K R + Sbjct: 173 NGLKEQEVVNDRLMELANETGLPLVATNDCHYLGKDDYEAHDILLCVGTGKIASEKQRLK 232 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K EM + F+ PEA+EN IA C L++ P + E Sbjct: 233 FDTNEFYYKAPEEMEAAFAHCPEAVENAGRIADMCEVELKLKQHFFPVYDVPEGV----T 288 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + E R + GL+ R+A A+ YR+RL+ EL VI F YFLIV DFI W Sbjct: 289 LDQEFRRLSEEGLKERIA--ALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDFINW 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK NIPVGPGRGS AGS+ +YAL ITD+DP+R++L FERFLN +R SMPD D+DFC +R Sbjct: 347 AKSKNIPVGPGRGSAAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFCYNR 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI+YV KYG + VAQI+ FG+++AK A+RDV RAL + DR+ KLIP+D Sbjct: 407 RDEVIKYVSEKYGADHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDLKMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++ +A+ ++ R +DP +L +++++LEGL RH+S HAAGIVI +P+ + +P++ Sbjct: 467 LT-KALDEEPELRNLIDSDPQYKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYLPLH 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605 + ++ VTQ +MK +E GLIKFDFLGLKTLT++ +L + + L +P DD Sbjct: 526 KG-KNGEVVTQLDMKKVELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN-- 663 +T+ LL T G+FQLES GMR+ L G++P C EDIIAL++LYRPGP+++ +V + Sbjct: 585 PQTFELLCRGETDGVFQLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDDFIG 644 Query: 664 RKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 RK+G K+ + P+L++T GVI+YQEQVM+IA L+ YSL E D LRRAMGK Sbjct: 645 RKHGLRKVEYEFEELAPVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRAMGK 704 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EM KQ+ RF+ GA +N IS+ A IF+L+ KFA YGFNKSH+AAYAVISYQTA++ Sbjct: 705 KDPAEMAKQRVRFLDGARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQTAYV 764 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP EF+AA +T E+ N +KI R +I+++PP VN +F V I Y L Sbjct: 765 KAHYPAEFMAAIITSEVSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIRYGL 824 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 + IKGVG I E F SL DFC RV+ +K+N+RVL+SL+ +GA+D FG SR Sbjct: 825 SGIKGVGEGAVESIEEEREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFGCSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG------TFSDKITLEKFSVENSSVRF 952 LL++LD +Q AQ K +T+ + + + + Sbjct: 885 RALLENLDKVQAMAQKRAKRKTSGQLSFMGMVEENTCNLTGLGIEDDEAALPEFGDDEKC 944 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ GF+ GHPL ++ +R++G + + +++ +V S + T+KG Sbjct: 945 RMEKEAFGFFLIGHPLQPFRQEIRRLGYPSLAQCADLTEKSPVQVPVLVTSMKTINTKKG 1004 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 R+ + + + EA F Sbjct: 1005 DRMAFCGIEDLSGSGEAIVF 1024 >gi|331086727|ref|ZP_08335804.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409893|gb|EGG89328.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1158 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 376/1048 (35%), Positives = 577/1048 (55%), Gaps = 41/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A AAGI P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL +GYQ L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPGSRFDHEINGGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI + L+E EG+I L+ +G + + + A++ L ++ +FG ++ LQ Sbjct: 119 RIDIELLEEYH-EGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ ++++LA + LVATN+ + ED + HD+L+ + ++ ++R R Sbjct: 178 HGLTEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMR 237 Query: 248 VTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y + M+ +F +ALENT +IA RC ++ LP++ Sbjct: 238 YAGGQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKYDVPGGM----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GLE R ++ ++RL +EL+ I M + YFLIV DFI++ Sbjct: 294 SWEYLNQLCFEGLERRYPNPG-------EELKERLFYELSTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARDNDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + FR+ D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 ID-KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R TQF M +E+ GL+K DFLGL+TLT++Q +++ + Q GVK+D+ I ++D Sbjct: 526 RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVNLVEQATGVKLDMGEIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T T G+FQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 645 NDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +++++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 ERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP+EF+AA MT ++N K+ ++ ARQ I+I+PP +N F V + I Y Sbjct: 765 YLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINRGVSGFSVDEGNIRY 824 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFG 895 LAAIK +G I+ E + + L+DF R+ K+ LN+R +E+ + AGALD G Sbjct: 825 GLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRSIENFIKAGALDNLG 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953 +R Q + I +K + ++F E +I L Sbjct: 885 GTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEFEIQLPDVGEYEKETLLA 944 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHPLD Y+ +K + G + M+V K Sbjct: 945 FEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKVHDGAKEIIGGMIVGKT 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 IKHTKTNQMMAFITVEDLLGTVEVVVFP 1032 >gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A] gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516] gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516] gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A] gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1160 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 60 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 110 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 943 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio sp. JE062] Length = 1144 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 535/1032 (51%), Positives = 730/1032 (70%), Gaps = 14/1032 (1%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL+VHS+YSLLEGAL + ++D + D+QPA+AITD+ NLF ALEFS+KA AG Sbjct: 2 SSPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPIIGCQ+ ++ +D + + V +VLL + EGY+ L++LVSR +L + Sbjct: 62 MQPIIGCQVSVNFEDQPDV-----SGDDAVSDLVLLAANEEGYENLMDLVSRAFLDTEPG 116 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + +S + + G+I+LTG S GPI+ +A+ RL + FGDRLYV L Sbjct: 117 FKANVPISRVLNK-SGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVEL 175 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH + E +++ LAY +P+VATN + F + +DYEAHD L+A++ V+ + DR Sbjct: 176 QRHNMKGEEDVEPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDR 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDI 303 ++TP+H K R +M+ +FSDLPEALEN+V IA+RC + APILPRF + + ++ Sbjct: 236 RQLTPEHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEA 295 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E EL +A GL+ RL +A +DY RLD+EL +I RMKF GYFLIVADF Sbjct: 296 ERAEAEELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADF 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFC Sbjct: 356 IKWAKNEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR+EVIRYVQ KYG E+VAQIIT+G+LQAKA LRDVGR LQMPY QVDRL KL+P +P Sbjct: 416 QNRREEVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNP 475 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+P + +A+ + R REA + VDRLL+++ KLEGLYRHASTHAAG+VIGDRPL QL Sbjct: 476 ANPCTLPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQL 535 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PV QFNMKW+E AGL+KFDFLGLKTLT++ ++ + +RG++V + IP Sbjct: 536 VPLYRDPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIP 595 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY LL T+G+FQLES GMR+A+ GM+PD EDI+ALV+LYRPGP+DNI +YN Sbjct: 596 IDDPLTYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYN 655 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K+G+++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI Sbjct: 656 AVKHGEQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIA 715 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+ Q+ RF+ GA + + K A I++L+AKFA+YGFNKSHAAAYA+++YQTAW+K + Sbjct: 716 SEMEIQRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKAN 775 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEFLA MTL++ N +K+ F Q+A + I+++PP+VN V F V D +I Y++ AI Sbjct: 776 YPVEFLAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAI 835 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG HI+E D+PF L DF +R+ K LN+R +E+L+ AGA D +R QLL Sbjct: 836 KGVGEQAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLL 895 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD I AQ E+N+ + + F + + + L S R + E +GFY Sbjct: 896 DGLDRIIGMAQRTEENKNSGQNDFFGGDNAP--EPLILNPTDPWLPSERLQKEHAAVGFY 953 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020 S HPLD Y+ + K+ ++ +++ +++ G++ RLA V +KQ++KTR G+++G V Sbjct: 954 ISAHPLDEYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRI 1013 Query: 1021 SEPAKEYEANFF 1032 S+P +YEA F Sbjct: 1014 SDPTGQYEAVMF 1025 >gi|225572766|ref|ZP_03781521.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM 10507] gi|225039823|gb|EEG50069.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM 10507] Length = 1156 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 377/1046 (36%), Positives = 581/1046 (55%), Gaps = 40/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + ++++ + AITD ++ ++F + AAGI PI Sbjct: 3 FTHLHVHTEYSLLDGSNKITEYVERVKELGMDSAAITDHGVMYGCIDFYRACKAAGINPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +VLL +GY L+++VS+ + ++ R Sbjct: 63 LGCEVYVAPSSRFDR--ETGAGEDRYYHLVLLAENNQGYSNLMKIVSKSF-VEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ L+E EG+I L+ +G + R + +K L ++++FG ++ LQ H Sbjct: 120 VDLALLREYH-EGIIALSACLAGEVARYLTRGMYEEGKKAALRYEEIFGKGNFFLELQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + Q++++ + LVATN+ + ED HD+L+ + +S ++R R Sbjct: 179 GISQQQTVNQQLLRMHQETGIDLVATNDVHYTYAEDEAPHDILLCIQTGKKLSDENRMRY 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ +M +F EALENT +I +RC ++ LP++ E Sbjct: 239 VGGQYYVKSAEQMAELFPYALEALENTYKIGQRCHVDIEFGVTKLPKYDVPEG----YTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GLE R ++ RQRL +EL+ I M + YFLIV DFI++A Sbjct: 295 WEYLNKLCFEGLEERYQP-------VTEELRQRLSYELDTIKNMGYVDYFLIVWDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + + I VGPGRGS AGS+ +Y L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 348 RDHGIMVGPGRGSAAGSLVSYTLGITKLDPMRYDLLFERFLNPERVSMPDIDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV QI+TFG+L A+ +RDVGR L MPYSQVD + K+IP + + Sbjct: 408 QEVIDYVVKKYGKDRVVQIVTFGTLAARGVIRDVGRVLDMPYSQVDTIAKMIPTELNITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ + + DP + L++++++LEGL RH S HAAG+VI + + + VP+ R Sbjct: 468 D-LALKKNPELAKVYEEDPEIHHLIDMAKRLEGLPRHTSMHAAGVVISQKDVDEYVPLSR 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 TQF M +E+ GL+K DFLGL+TLT++Q +++ A +G+ +D+ I ++D Sbjct: 527 AA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVELVEADKGIHLDMDAIDYNDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + L T T G+FQLES GM+ ++ ++P +ED+IA +SLYRPGP+D I Y KN Sbjct: 586 KVLDSLGTGHTDGVFQLESGGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 E I P ++P+LK T G I+YQEQVMQI + L GY+L +D+LRRAM KK M+ Sbjct: 646 HPETITYDCPQLEPILKATYGCIVYQEQVMQIVRNLGGYTLGRSDLLRRAMSKKKASVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGI + IA I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 706 KERQSFVYGNEEEGVPGCINNGIDEKIANRIYDNMIDFAKYAFNKSHAAAYAVVSYQTAF 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT +DN K+ ++ R+ IQI+PP +N F V I Y+ Sbjct: 766 LKYYYPVEFMAALMTSVIDNPGKVSEYIFTCRKMGIQILPPDINRGETVFSVDHGAIRYA 825 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAAIK +G + I++ + F S++DF +R+++K +N+R LE+ + AGA DC + Sbjct: 826 LAAIKSIGKSVIDEIVKERKTNGEFVSMKDFVTRINNKDINKRSLENFIKAGAFDCLEGN 885 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + + + A +KN ++F E+ +I L K + E Sbjct: 886 RRQQMMVYPLVMESAIQEKKNMMAGQMSLFDLVGEEDKKDYEIQLPKVEEYDQDTLLNFE 945 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHPL+ Y+ ++ K + G + M+ K+ K Sbjct: 946 KEVLGIYISGHPLEKYRALMEKNVTAWTSDFQPDEETGFPKVKDGVKAIIGGMITEKKVK 1005 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 TR + ++T + E FP Sbjct: 1006 YTRTNKVMAFLTLEDLVGIVEVVVFP 1031 >gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP 31758] Length = 1160 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 60 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 110 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 943 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans SI85-9A1] Length = 1153 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 585/1036 (56%), Positives = 748/1036 (72%), Gaps = 10/1036 (0%) Query: 5 LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS++SLLEGAL L+ I+ D PAI I DTNNLF ALEFS+KA Sbjct: 1 MASDTKPKFVHLRVHSAFSLLEGALKLDQIIKFAKGDDAPAIGICDTNNLFGALEFSEKA 60 Query: 63 CAAGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AGIQPI GCQ+D++ D + + ++ +VL+ +T GY L+E+VS YL Sbjct: 61 SKAGIQPITGCQIDVEFSDCEESRGGRRERSLSSIAPLVLIAATEAGYANLVEIVSLAYL 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + WL E +EG+I LTGG GPI A + S +A R+ +FGDR Sbjct: 121 GHADNPRPHVLFEWL-ETRSEGIIALTGGPLGPIGSAIAADRSDLARSRMERMAPVFGDR 179 Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 LYV LQRH G R E+ +QLAY LPLVATN FL +D+EAHD L+AVA + +VS Sbjct: 180 LYVELQRHEGRSRKVEADTLQLAYDMALPLVATNEPFFLKADDFEAHDALIAVAGNRLVS 239 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 Q+DR R++ DH LK+++EM +F+DLPEAL NTVEIA+RCS+ + APILPRF + D Sbjct: 240 QEDRRRLSRDHSLKSQNEMSVLFADLPEALHNTVEIAQRCSYRPRTRAPILPRFAGADAD 299 Query: 302 DIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E LR +A+ GLE RLA +A G A+ YR+RL+FEL++I RMKF GYFLI Sbjct: 300 AAEAEAAEVAELRRQAIEGLEARLAAHGLAPGETAESYRERLEFELSIIERMKFPGYFLI 359 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI+WAK IPVGPGRGSGAGS+ AYALT+TD+DPLRFSLLFERFLNP+R+SMPDFD Sbjct: 360 VADFIKWAKAQGIPVGPGRGSGAGSLVAYALTVTDLDPLRFSLLFERFLNPERVSMPDFD 419 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y QVD+LCKL+ Sbjct: 420 IDFCQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGQVDKLCKLV 479 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA+PV+ QA+ ++ R +EAR + VDRL+ I+ KLEGLYRHASTHAAGIVIGDRP Sbjct: 480 PQNPANPVTLAQALVEEPRLQEAREKEEIVDRLISIALKLEGLYRHASTHAAGIVIGDRP 539 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LSQLVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQK+++ +A+ G +DL Sbjct: 540 LSQLVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQKAVELIARTGPTIDL 599 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP DD TY ++T T+G+FQ+ES GMR+AL GM+PD EDIIALV+LYRPGP++NI Sbjct: 600 SAIPLDDARTYEMMTRGETVGVFQVESVGMRKALIGMRPDRFEDIIALVALYRPGPMENI 659 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 YN RK+G+E+ IH I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMG Sbjct: 660 PTYNARKHGEEEPDFIHDKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMG 719 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ RF+ GA NG+ KT + IF+LLAKFADYGFNKSHAAAYA+++YQTA+ Sbjct: 720 KKIRAEMDKQRVRFVEGAVANGLDKTQSNMIFDLLAKFADYGFNKSHAAAYALVAYQTAY 779 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++PVEFLAASMTL+ N EK+ F DA + I+I+PPSV T F+VG+N+I+Y+ Sbjct: 780 LKANHPVEFLAASMTLDAGNTEKLNDFRMDAMRLGIKIVPPSVQTSFRQFEVGENKIFYA 839 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LAAIKGVG HI+ D F SLEDFC+R+D K +N+R LE L+ AGALDCFG+ R Sbjct: 840 LAAIKGVGEQAVDHIVATRGDGSFQSLEDFCARIDPKIVNKRTLEFLIAAGALDCFGHER 899 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L ++D + YA V + R + ++F G+ + + L + SS + E + Sbjct: 900 ALLCANIDLMASYALRVHEGRASGQHDMFGGA-GSEPEPLHLNPAQLWTSSEKLLREFQA 958 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GFY S HPLD YK L+++ ++ + E A RG +LA V S+Q++KTR G ++G Sbjct: 959 IGFYLSAHPLDEYKTTLKRLRVQTHAEVIHAVKRGATAGKLAGTVTSRQERKTRSGGKLG 1018 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P+ +YE F Sbjct: 1019 IIQLSDPSGQYEVVLF 1034 >gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80] gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80] Length = 1159 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426] Length = 1159 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286] gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33] gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21] gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9] gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236] gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101] gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27] gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93] gi|14195659|sp|P52022|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9] gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21] gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33] gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286] gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236] gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101] gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27] gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93] Length = 1159 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18] gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 1185 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 535/1040 (51%), Positives = 701/1040 (67%), Gaps = 15/1040 (1%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 T + + FVHL VHS+YSLL G++ + + + AD QPA+A+TDT+N+F ALEFS+K Sbjct: 16 TAPMTNA-GFVHLHVHSAYSLLRGSIKVAKLCELAKADHQPALALTDTDNMFGALEFSEK 74 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 GIQPI+GC+L +D D + P+ IVLL + GY+ LI+L SR +L Sbjct: 75 MAGYGIQPIVGCELAVDFGDQDPNARNALSAAPS--RIVLLAARERGYRSLIKLNSRAFL 132 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 Q+ I L WL E LI L+GG GPI AF + + +AE R LFGDR Sbjct: 133 ETPVNQTPHIKLDWL-NGEAEDLIALSGGPEGPISLAFTADQAGLAEARCDRLAALFGDR 191 Query: 182 LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LY+ LQRH +R E+ ++ LAY LPLVATN F + +DYEAHD L+ +A +V Sbjct: 192 LYIELQRHGVDAERRAEAALIDLAYAKGLPLVATNEPYFATNDDYEAHDALLCIAGGRLV 251 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ DRP++TPDH K R+EM +F+DLPEAL +TVEIA RC+F + PILP F Sbjct: 252 AETDRPQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPRTRKPILPHFTLGAG 311 Query: 301 DDIQ-----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E +E+R +A GL RL +AKG ++YR RL+FEL +I RM+++G Sbjct: 312 TGSHAAAASSNEADEVRAQAEQGLIKRLQVHGVAKGATEEEYRARLEFELGIITRMQYAG 371 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI+WAK+N IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM Sbjct: 372 YFLIVGDFIKWAKENGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSM 431 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L Sbjct: 432 PDFDIDFCQDRRGEVIEYVQRRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 491 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KL+P +PA PV+ QAI + + + R DP V R I+Q+LEGL RHASTHAAGIVI Sbjct: 492 TKLVPQNPAAPVTLKQAIESEPKLQAFRDEDPVVARAFNIAQRLEGLTRHASTHAAGIVI 551 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QRGV Sbjct: 552 GDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRGV 611 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V L +P DD +T+ +L +G+FQLES GMR+AL M+PD EDIIALV+LYRPGP Sbjct: 612 VVSLPTVPLDDPDTFAMLGRGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGP 671 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NI Y RK+G E+ +HP+++ +LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR Sbjct: 672 MANIPTYCARKHGDEEPEYLHPILESILKETFGVIIYQEQVMQIAQVMAGYSLGQADLLR 731 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKI+ EM+KQ+ FI+G+ ++G+ K A IFELLAKFADYGFNKSHAAAYA++SY Sbjct: 732 RAMGKKIRAEMEKQRAGFIAGSVEHGVPKAQADAIFELLAKFADYGFNKSHAAAYALVSY 791 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TA+MK HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+V D Sbjct: 792 HTAYMKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKLEAPSVNRSGATFEVADGV 851 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 IYY+LAA+KGVG I+E F SL DF ++V K +N+RV+ESL AGA D Sbjct: 852 IYYALAALKGVGAQAVELIVEGRKGGLFSSLADFAAKVSPKAINKRVIESLAAAGAFDGL 911 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R + D I Q + ++F + I L + + R Sbjct: 912 NPNRAAVFGGADAIMAACQRHHEAAAMGQNDMFGGMAD--APTIMLPQLEAWLPAERLRR 969 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012 E +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G Sbjct: 970 EYDAIGFFLSGHPLDDYATALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTG 1029 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +++G + S+P +EA F Sbjct: 1030 NKMGILGLSDPTGHFEAVLF 1049 >gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3894-4] Length = 1157 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 423/1048 (40%), Positives = 618/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|154503521|ref|ZP_02040581.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149] gi|153795621|gb|EDN78041.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149] Length = 1157 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 375/1047 (35%), Positives = 575/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREARKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL GY L+++VSR + + Sbjct: 62 ILGCEVYVAPNSRFDRETAGGES--RYHHLVLLAENNTGYANLMKIVSRGFT-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ +G + R ++ A+K L ++ +FG ++ +Q Sbjct: 119 RVDKDLLRQYH-EGIIALSACLAGEVQRYLSRGLTEEAKKVALEYQDIFGKGNFFLEMQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +QL+ + LV TN+ + ED + HD+L+ + + ++R R Sbjct: 178 HGIPEQQLVNQRQIQLSKETGIELVVTNDIHYTYAEDAKPHDILLCIQTGKKLDDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM ++F +ALENT +IA RC ++ LP++ + Sbjct: 238 YEGGQYYVKSPQEMEALFPYAKQALENTQKIANRCEVEIEFGVTKLPKYDVPDGM----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GLE G +++ ++RL +EL+ I M + YFLIV DFI++ Sbjct: 294 SWEYLNKLCWEGLEKH-------YGEPSRELKERLRYELDTIRNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R++MPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLLFERFLNPERVTMPDIDVDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDSIAKMIPQELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ DP V L+++ ++LEGL RH+S HAAG+VIG R + VP+ Sbjct: 467 ID-KALQMNPELRKTYENDPQVKLLIDMCKRLEGLPRHSSMHAAGVVIGQREIDDFVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M +E+ GL+K DFLGL+TLT++Q ++ + ++D+ I ++D Sbjct: 526 RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVQLAKSKNPELDMDQIDYNDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y KN Sbjct: 585 QVLSYIGTGKTDGIFQLESGGMKGFMKELKPNSLEDIIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 645 DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 705 KERQIFVYGDEENGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVE++AA MT ++N K+ ++ RQ NIQI+ P +N +F V N I Y Sbjct: 765 LKYYYPVEYMAALMTSVIENPSKVAEYIYACRQMNIQILSPDINRGIGNFSVDGNNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896 LAAIK +G I+E + PF +LEDF SR+ K LN+R +E L+ +GALDC G Sbjct: 825 LAAIKSIGRPVIAAIIEDRDEFGPFKNLEDFISRMSFKDGLNKRAIEHLIKSGALDCLGG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I + +K +F E+ +I L + Sbjct: 885 TRKQFMSIYVQIVDHVNQEKKYAMTGQMTLFDMVGEEEKEQFEIKLPDVGEYSKENLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL Y+ RK + G + M+ +K Sbjct: 945 EKEVLGAYLSGHPLQEYEDKWRKSISATTLDFQPDEETGRAKVHDGTREIVGGMITAKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + +++ + E FP Sbjct: 1005 KHTKTNQMMAFLSLEDLVGTVEVIVFP 1031 >gi|331092255|ref|ZP_08341083.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401687|gb|EGG81266.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium 2_1_46FAA] Length = 1157 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 367/1046 (35%), Positives = 575/1046 (54%), Gaps = 40/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A A GI+PI Sbjct: 3 FAHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMFGVIDFYRAAKAEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + Q + T +VLL +GY+ L ++VS+ + ++ R Sbjct: 63 LGCEVYVAPQSRFDK--EVGTREDRYYHLVLLAENNKGYENLTKIVSKAF-VEGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ EG+I L+ +G + + + A K ++K+FG ++ LQ H Sbjct: 120 VDYELLEQYH-EGIIALSACLAGEVQKNLLRGMYEEAVKSAKRYEKIFGKGNFFLELQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ ++++L+ + LVATN+ + ED + HD+L+ + + ++R R Sbjct: 179 GIPEQATVNQRLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLQDENRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +Y+K+ EM +F +ALENT +IA RC ++ LPR+ Sbjct: 239 EGGQYYVKSPEEMAELFPYALQALENTQKIADRCDVEIEFGVTKLPRYDVPSG----YTS 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GL A ++ +RL +EL+VI +M + YFLIV DFI++A Sbjct: 295 WEYLNKLCFDGL-------ASRYQPVTEELGERLTYELSVIQKMGYVDYFLIVWDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + N+I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 348 RDNDIMVGPGRGSAAGSIVSYCLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + + Sbjct: 408 QEVIDYVVRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNMTL 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +A++ + ++ D V L+++S +LEGL RH S HAAG+VI +P+ + VP+ Sbjct: 468 T-KALSVNPELKKVYEEDAEVKELIDMSLRLEGLPRHTSMHAAGVVISQKPVDEYVPLSL 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 TQF M +E+ GL+K DFLGL+TLT++Q + + K+D+ I ++D Sbjct: 527 GA-DGAVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAKLAEKSSGHKIDMHKINYNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 E + T T GIFQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 586 EVLESIGTGKTDGIFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P ++P+L+ T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M+ Sbjct: 646 DRGSITYDCPQLEPILESTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVME 705 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV++YQTA+ Sbjct: 706 KERQNFVYGNEEEGVPGCVANGIPEETANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTAY 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT +DN K+ ++ +RQ I I+PP +N +F V + I Y Sbjct: 766 LKYYYPVEFMAALMTSVIDNPGKVSEYIYASRQMGIHILPPDINEGEGNFSVDNGNIRYG 825 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 LAAIK +G I+ + +L++F R+ K++N+R +E+ + AGA D + Sbjct: 826 LAAIKSIGRPVIEAIITEREIGGKYQNLKNFIERLSGKEVNKRTIENFIKAGAFDSLPGT 885 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955 R QL+ I KN + ++F E+ I L E Sbjct: 886 RKQLMMIYIQILDQVNKDRKNSMSGQMSLFDLVDEEQKKEFDIPLPDVKEYEKETMLAFE 945 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007 + VLG Y SGHP++ Y+ + +K + G+ + ++V+K K Sbjct: 946 KEVLGVYVSGHPMEEYEELWKKSISATTMDFQPGEETGRSKVRDGSKEIIGGLIVNKTIK 1005 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + ++T + E FP Sbjct: 1006 YTKNNKVMAFLTIEDLLGTVEVVIFP 1031 >gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80] gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52] gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395] gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457] gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33] gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2] gi|227082369|ref|YP_002810920.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2] gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226] gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10] gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80] gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52] gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457] gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33] gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395] gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2] gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226] gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2] gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395] gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10] Length = 1164 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 6 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 65 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 115 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 174 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 234 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 289 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 349 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 409 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 469 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 528 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 588 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 648 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 708 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 768 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 828 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 888 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 948 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3] gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3] Length = 1164 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 6 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 65 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 115 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 174 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 234 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 289 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 349 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 409 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 469 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 528 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 588 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 648 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 708 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 768 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 828 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 888 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 948 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|323142354|ref|ZP_08077186.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT 12067] gi|322413238|gb|EFY04125.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT 12067] Length = 1135 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 374/1041 (35%), Positives = 603/1041 (57%), Gaps = 38/1041 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YSLL+GA ++ ++ ++AITD ++ A+EF Q+ Sbjct: 1 MTK--RFTHLHVHTEYSLLDGASKIHELVAYAKELGMDSLAITDHGAMYGAVEFYQECTK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIGC++ + +L+ N+G + ++LL GY L+++VS L + Sbjct: 59 AGIKPIIGCEVYLSKGSHLEKNNRG------MYHLILLAENDTGYHNLMKIVSIGQL-EG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L+ EG+I L+ +G + + ++ + A + + + +FG + + Sbjct: 112 FYYKPRVDKDVLRTYH-EGVICLSACVAGEVPQMILQDNLEGARRCIQEYIDIFGKENYF 170 Query: 184 VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H + ++ +++ QLA L LVATN+ ++ ++D A D+L+ + ++ V + Sbjct: 171 LEIQDHDLDEEHKVSAELKQLAQEFGLGLVATNDLHYVQQKDAAAQDILLCIQTTSTVDE 230 Query: 243 KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR R D +YLK+ EM ++F D PEAL NT +IA RC+ ++ +LP F E Sbjct: 231 PDRMRFNNDSYYLKSYDEMEALFGDCPEALSNTNKIADRCNVKMEFGHLLLPEFPVPEGF 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D + LR+ + R+RLDFEL++I M ++ YFLIV Sbjct: 291 D----AVSYLRHLCEE-------ALPKRYEVVDEKVRKRLDFELDIINTMGYACYFLIVW 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI + + ++IPVGPGRGS AGS+ AY L IT+I+PLR+ LLFERFLNP+R+SMPD D D Sbjct: 340 DFINYCRSHDIPVGPGRGSAAGSIVAYLLRITNIEPLRYHLLFERFLNPERVSMPDIDTD 399 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +R++V+ YV +YG ERVAQIITFG+LQA+AA+RDVG+AL M Y +VD + KLIP Sbjct: 400 FCYVKRNQVLDYVVRRYGQERVAQIITFGTLQARAAVRDVGKALGMSYGEVDEIAKLIPR 459 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ FR+A + P V +L++++Q +EGL R+A THAAG++I + Sbjct: 460 ELGITLE-KALNGSKDFRQAYDSRPEVKKLIDLAQSVEGLPRNAGTHAAGVIIAPHNMKN 518 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 VP+ + +TQ++ +E+ GL+K DFLGL+TLT++ + F+ + +VD+ Sbjct: 519 YVPLQQGSEGG-VITQYDKNKVEELGLLKMDFLGLRTLTVIGDCIRFIRETTGEEVDIDN 577 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 IP D T +L T +FQLES+G+ + + + P+ ED+I LV+LYRPGP+ + Sbjct: 578 IPLADEATCAMLRRGETACVFQLESAGITKLVMDLAPESFEDLIPLVALYRPGPLGTGMA 637 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + ++G+ +HPL++P+LK+T GVI+YQEQVMQI L+G++L +AD+LRRAMG Sbjct: 638 EDFIAGRHGQRTAKVLHPLMEPILKDTYGVILYQEQVMQITSALAGFTLGQADILRRAMG 697 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 KK +E+D ++ FI GA K + I + ++ IF LL FA YGFNKSH+ AYA+++Y+TA Sbjct: 698 KKKAKELDSMRQSFIDGAKKLHDIPEELSDQIFSLLQHFAGYGFNKSHSVAYALVAYETA 757 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836 ++K H+ +F AA + + + +K+ + R N++I+PP VN +F V N I Sbjct: 758 YLKAHWRPQFYAAFLNSIIGDADKVSWYINVCRNDNVKILPPDVNESGHNFTVHKNSSIR 817 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + LA IK G I+ A PF SL DFC RV+ + +N+RV+E+++ GA+D FG Sbjct: 818 FGLAGIKNTGDAAVDAIISARNEGGPFKSLTDFCCRVNMRVVNKRVIENMIKCGAMDSFG 877 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q+L ++ ++++ N +F + + +I L + +NE Sbjct: 878 ARRSQMLSIIEQAVDLGAACQRDKANGQLGLFGDDSFGVT-EIKLPPLPEIPKQLILQNE 936 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKG 1012 + ++GFY + HPL YK +L++ + G +R+A ++ K T++G Sbjct: 937 KEIIGFYVTDHPLSDYKQMLQRF--MPLHQFGGETQVQDGQFVRVAGIITDCTIKNTKRG 994 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + +T + + + FP Sbjct: 995 DTMAVLTLEDFSGRFPVIVFP 1015 >gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1] gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1] Length = 1172 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 587/1030 (56%), Positives = 760/1030 (73%), Gaps = 10/1030 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS+YSLLEGAL L I+ D+ PAIA DTNNLF ALEF+QKA GIQPI Sbjct: 26 FIHLRVHSAYSLLEGALPLGKIIGHALKDEAPAIATADTNNLFGALEFAQKAVKDGIQPI 85 Query: 71 IGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGCQLD+ D + + F +VL+ +T GY L+ L+SR YL ++ + Sbjct: 86 IGCQLDVAFDDAFAEARRAASRKSFADYDPLVLIAATEAGYANLVRLMSRAYLDNEAGEP 145 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WLQE +EG+I LTGG GPI + +++AE RLL ++ +GDRLYV L+R Sbjct: 146 PHVAADWLQE-HSEGIICLTGGPRGPIGAPLKADRAELAEARLLLLRETYGDRLYVELER 204 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +GYDR E+ V LAY H+LPLVATN + F + +D++AHD L+A+A +V++ DR R+ Sbjct: 205 LQGYDRNLEAAAVNLAYRHDLPLVATNEAFFPTRDDFDAHDALIAIAEGSVIASDDRRRL 264 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQK 305 TPD+YLK ++EM ++F+DLPEAL+NT+E+ARRCS+ + PILPRF E D + Sbjct: 265 TPDNYLKTQAEMAALFADLPEALDNTLEVARRCSYYPKTRKPILPRFTGDEAGDEAAALQ 324 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E +ELR +A GL+ RLA IA+G+ ++Y RL++EL VI RMKF GYFLIVADFI+ Sbjct: 325 AEADELRRQAREGLDKRLAIQGIAEGHSEEEYAARLEYELGVIERMKFPGYFLIVADFIK 384 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYALTITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQD Sbjct: 385 WAKAHDIPVGPGRGSGAGSLVAYALTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQD 444 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVDRLCK++P++PA+ Sbjct: 445 RREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKMVPSNPAN 504 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P +AI D+ RF E +P V LLEI+QKLEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 505 PTPLGKAIEDEPRFAEEVEKEPIVGTLLEIAQKLEGLYRHASTHAAGIVIGDRPLSELVP 564 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+K++ + +RG+++DLS IP D Sbjct: 565 MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLEKAVHLIRRRGIEIDLSKIPLD 624 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +L+ T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI YN R Sbjct: 625 DKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDRVEDIIALVALYRPGPMENIPTYNAR 684 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ L+GY+L EAD+LRRAMGKKI+ E Sbjct: 685 KHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYTLGEADLLRRAMGKKIRAE 744 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MDKQ+ RF+ GA + G++K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYP Sbjct: 745 MDKQRVRFVEGAVERGVTKQQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYP 804 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F +DA + I+++PPSV T DF+VG+NRI+YSLAAIKG Sbjct: 805 VEFLAASMTYDMANTDKLNDFRRDAIRLGIEVVPPSVLTSYRDFEVGENRIFYSLAAIKG 864 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G HI+ +KPF+S+EDFC+RVD K + +RVLESL+ AGA DCFG R L Sbjct: 865 AGDAAVEHIVAKRKEKPFESIEDFCARVDPKIVGKRVLESLICAGAFDCFGLDRAALFAG 924 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 +D + A ++ +IF K+ L + ++ + E +V+G Y S Sbjct: 925 VDRLMGMASRAAEDAAIGQADIFG-SAAIEPQKLQLPATAPWLAAEKLHREFQVVGCYLS 983 Query: 965 GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y P L K+ ++ + + A RG RLA V +KQ++KTR G+++G V FS+ Sbjct: 984 AHPLDDYLPTLEKLRVQSWADFQAAVKRGATAGRLAGTVTAKQERKTRTGNKMGIVQFSD 1043 Query: 1023 PAKEYEANFF 1032 +YEA F Sbjct: 1044 ATGQYEAVLF 1053 >gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F] gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F] Length = 1171 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 602/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL A +Y +RLD EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKAKQGLEERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 834 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 954 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM 10] gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua] gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516] gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125] gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola] gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92] gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27] gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003] gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM 10] gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516] gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua] gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92] gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125] gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola] gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004] gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038] gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27] gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003] Length = 1171 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL +Y +RLD EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 834 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 954 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|153956157|ref|YP_001396922.1| DNA polymerase III DnaE [Clostridium kluyveri DSM 555] gi|219856482|ref|YP_002473604.1| hypothetical protein CKR_3139 [Clostridium kluyveri NBRC 12016] gi|146349015|gb|EDK35551.1| DnaE [Clostridium kluyveri DSM 555] gi|219570206|dbj|BAH08190.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1158 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 375/1050 (35%), Positives = 590/1050 (56%), Gaps = 49/1050 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V L H+ YSLL+ + ++ ++ + + +IAITD +++ +EF ++A A GI+PII Sbjct: 9 VSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAKAQGIKPII 68 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + N G+ +VLLV EGY+ L+++VS + + R+ Sbjct: 69 GCEIYVSQKSMYVKQNNGEN---GNYHLVLLVKNKEGYKNLMKIVSTASI-EGFYYKPRV 124 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 +L+E +EGLI L+ SG + ++ + A++ L ++K+F + Y+ LQ H Sbjct: 125 DHDYLRE-HSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLELQYHGI 183 Query: 192 YDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249 ++ +++ ++ +PLVATN+ ++ +EDY +HDVL+ + V ++ R R + Sbjct: 184 EEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQRMRYPS 243 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + YLK+ +M +FS +PEALENTV+IA +CSF + H LP+F KE D Sbjct: 244 DEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGIDPY----E 299 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 ++ GL+ R + RL++EL++I +M + YFLIV DFI +A + Sbjct: 300 YMKELCYKGLKKRYKN-------IDDNLINRLEYELDIIKKMGYVDYFLIVWDFISFAVQ 352 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGSGAGS+ AY L IT +DP++++L+FERFLNP+R+SMPD D DFC +RR E Sbjct: 353 NGIMTGPGRGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFCYERRGE 412 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI YV KYG V+QI+TFG++ A+A +RDVGRA+ PY +VDR+ K+IP + Sbjct: 413 VIDYVVGKYGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTILNITID- 471 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A+ + + A + L+++++ LEGL RH STHAAG+VI +PL VP+ ++ Sbjct: 472 KALEINPELKGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYVPLQKN- 530 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608 VTQF M +E+ GL+K DFLGL+TLT+L+ +L + + +DL I +DD Sbjct: 531 -EGNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNIDYDDKAV 589 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y ++ T+G+FQLES GM ++ ++PD +EDIIA +SLYRPGPI I Y KN Sbjct: 590 YDMIGQGKTVGVFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYIKNKNSV 649 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 +I + P ++ +L T G ++YQEQVMQI + L+GYS+ +D++RRAM KK M+++ Sbjct: 650 HEINYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVMEEE 709 Query: 729 KERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 + FI G +NGIS+ A +IF+ + FA Y FNKSHAAAYAV+++QT Sbjct: 710 RRNFIYGIVDENGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYAVVAFQT 769 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++ +YP EF AA + + EK+ + + A+ I+++PPS+N F V D RI Sbjct: 770 AYLMHYYPTEFTAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTVEDGRIR 829 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+A+K VG I+++ F L DFCS ++ + +N+RV+ESL+ AGA DCFG Sbjct: 830 FGLSAVKNVGENIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAGAFDCFG 889 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R QL + I K ++F+ + + S +I E Sbjct: 890 KYRSQLSLVYEKIIDSVINSRKKNIKGQISLFSQIEDS-SIEIQYPSIKEFMKRDMLSME 948 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-------------ATIRGNNIRLAAMVV 1002 + + G Y SGHPLD Y+ L+ + + G+ + + ++ Sbjct: 949 KEMTGLYLSGHPLDEYEKTLKLQTDTKISDIITRETLEESFIEESRVRDGDKVIIGGILS 1008 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +K T+ + + + E F Sbjct: 1009 QVSRKITKNNDMMAFARLEDLYGIMEIIIF 1038 >gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099] gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099] Length = 1175 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 595/1029 (57%), Positives = 756/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL L I+ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQLGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ+ + +N + P + +VLL +T GY L+ LVSR+YL ++V Sbjct: 89 IGCQIALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L E +GLI L+GG GPI A + +AE RLLT K LFGDRLYV L R Sbjct: 149 HLTTEML-EGKADGLICLSGGPRGPIGNALKEDRRDLAEVRLLTLKTLFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E Q + LAY HELPLVATN + F S +DYEAHD L+A+A +VV+ R R++ Sbjct: 208 AGYDRVIEHQTIDLAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDIQKE 306 PD++L++++EM +F+DLPEA++NTVEIA RCS+ + +PILPRF + D +K Sbjct: 268 PDNFLRSQAEMAQLFADLPEAIDNTVEIALRCSYYPKTRSPILPRFTGGDASDKDAAEKA 327 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E EL +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EAAELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+ +DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ETY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G+SK A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVSKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV T F+VG+NRIYYS+AA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRPFEVGENRIYYSMAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R Q++ + Sbjct: 868 GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAQMMAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E A RG + RLA V SKQ++KTR G+++G V FS+ Sbjct: 988 HPLDEYKAALQKMRVQNWAEFSAAVKRGASAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1160 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ + + + +L GYQ L L+S Y Sbjct: 60 AGIKPIIGADFCVESDE----------LGDELAHLTVLAMNNAGYQNLTLLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ Sbjct: 110 GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V+LA H +P+VATN F+S +D++AH++ +A+ + Sbjct: 169 ELIRTSRPDEESYLHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|291542868|emb|CBL15978.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus bromii L2-63] Length = 1174 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 359/1045 (34%), Positives = 568/1045 (54%), Gaps = 40/1045 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL +H+ YSLL+GA L+ + A+AITD ++ A++F ++ GI+P Sbjct: 2 AFTHLHLHTEYSLLDGACRLSRLAKAAKEKGMTALAITDHGVMYGAVDFYKECKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + Q T + + +VLL GYQ LI+LVS+ + + Sbjct: 62 IIGCEVYVAPQSRFDKT----SSYGKYYHMVLLCKNHTGYQNLIKLVSKGFT-EGFYTKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L E EGL+ L+ +G I + A+ + ++ +FG + ++ LQ Sbjct: 117 RIDDELLAEYH-EGLVCLSACLAGEIPQKLLDGDYAGAKSKAEFYRDIFGSENFFIELQD 175 Query: 189 HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ R ++++A + +VATN+ ++ ++D H++L+ + + V+ DR Sbjct: 176 HGIEEQKRIIPSLIKIAREIGVDIVATNDCHYIEKQDSTVHNILLCIQTNRTVNDSDRME 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK EM +F+ PEA++NT +IA C+ + LPRF +D Sbjct: 236 FKTSEFYLKTEDEMREVFASYPEAIDNTQKIADMCNVDFEFGVRKLPRFDVPNNEDHLH- 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 R K GL + +Y E+N +++M F Y+LIV DF+ + Sbjct: 295 ---YFRRKCYEGLYKHYGENPDQSLIDRLEY------EINTVSQMGFVDYYLIVNDFVSY 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFD+DFC++R Sbjct: 346 AKSCQIPVGPGRGSGAGSLCAYCIGITAIDPIKYNLLFERFLNPERVSMPDFDVDFCKER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + VAQII+FG++ A+ A+RDVGR L++PY+ VD + KL+P + Sbjct: 406 RGEVIDYVVRKYGEDHVAQIISFGTMAARGAIRDVGRVLEIPYATVDSVAKLVPMEHDMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R DP + +LL+++ +EG+ RHA+ HAAG+VI D+P+S VP+ Sbjct: 466 IEEA-LKLSPNLRSRCNNDPQIKKLLDVAMSIEGMPRHATMHAAGVVITDKPVSDYVPLS 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 ++ D VTQF M +E+ GL+K DFLGL+ LT++ + + + + ++ +D Sbjct: 525 KN--DDNVVTQFTMTALEELGLLKMDFLGLRNLTVINDAEKQIKHKNPDYNPDMVDENDK 582 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + + + T G+FQ ES GM+ L ++P+ IED+IA+ +LYRPGP+D+I VY + ++ Sbjct: 583 KVFEMFSKGYTEGVFQFESQGMKNVLTQLKPERIEDLIAVTALYRPGPMDSIPVYIDCRH 642 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I HPL+ +L T G IIYQEQVMQI + L+GYSL AD++RRAM KK M+ Sbjct: 643 NPSHIRYKHPLLKEILGVTSGCIIYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKLAVME 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++E FI G + G+ + A+++++ + FA Y FNKSHAAAYA ISY Sbjct: 703 SEREIFIHGLTDDDGNIIVEGCIRRGVDEKTAISVYDEMESFAHYAFNKSHAAAYANISY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TAW+K HYP E++AA ++ +DN K+ + + ++ I+++PP+VN + F V N Sbjct: 763 KTAWLKCHYPREYMAALLSSVLDNQNKLASYITECKRLGIRVLPPNVNESNLHFTVSGND 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y L A+K +G I+ + P++ DFC R+ + +N R +ESL+ GA D Sbjct: 823 IRYGLLAVKNLGRNFIDEIISERINNPYEDFFDFCKRLYGRNMNSRAIESLIKCGAFDGL 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFE 953 G +R QLL + ++ + + F + S K + S Sbjct: 883 GANRRQLLAISKTVLDDVEYESRRNAGGQMSFFDDAEVDAQSSKPKIPDLPEFPVSELLH 942 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKK 1008 E + G Y SGHPLD Y + + + + G + L +V + + Sbjct: 943 MENEIAGMYLSGHPLDEYTTFSKAIHSDKTGDIINNDSGMYFDGKKVNLVCIVAKLKTQL 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + +V + E FP Sbjct: 1003 TKNNRIMAFVNAEDRYGMLEIVIFP 1027 >gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341] gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341] Length = 1159 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 425/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFML----------QSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL + EGLI+L+GG SG + RA + Q EK L ++ F D Y+ Sbjct: 110 VQHQPVLDKAWLID-HAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A +ELP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ +EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRTEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAIEDFLVMKSREGLEDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587] gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587] Length = 1164 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 423/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 6 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 65 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 115 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 174 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 234 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 289 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 349 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 409 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 469 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 528 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 588 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 648 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 708 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 767 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 768 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L D C+R+D KK+N+RV+E L Sbjct: 828 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F D + + Sbjct: 888 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEDVEQKYTQVP 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 948 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|28212073|ref|NP_783017.1| DNA polymerase III DnaE [Clostridium tetani E88] gi|28204516|gb|AAO36954.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1166 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 377/1051 (35%), Positives = 589/1051 (56%), Gaps = 50/1051 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L H+ YSLL+ + + ++ K+ +IAITD ++ +EF ++A GI+PIIGC Sbjct: 14 LHQHTEYSLLDSSAKITELIKKVKELGMKSIAITDHGVMYGCVEFYKEAIKEGIKPIIGC 73 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133 ++ + + + +VLLV GY+ L+E+VS+ + D R+ Sbjct: 74 EIYVVPKSMHIKRVDNDN---AIYHLVLLVKNDVGYRNLMEIVSKASI-DGFYYKPRVDH 129 Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193 +L+E +EGLI + G + + + AEK L +K++F + Y+ LQ H + Sbjct: 130 EFLRE-HSEGLIASSACLGGEVQSYILKGNIEKAEKAALNYKEIFKEGFYLELQDHGMKE 188 Query: 194 R-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPD 251 + ++++ ++ +PLVATN+ ++ +ED AHD+L+ V V +++R R T + Sbjct: 189 QVKVNNELIAMSKRLSIPLVATNDVHYIEKEDSRAHDILLCVQTGKTVEEENRMRYPTGE 248 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 YLK+ EM ++FS +PEALENT++IA +C+F H LP F + D + L Sbjct: 249 FYLKSPEEMYNLFSHVPEALENTIKIAEQCNFQYNFHESKLPTFPLPDKVDNY----DYL 304 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 R GL+ + + RL++ELNVI M + YFLIV DFI++AK+ + Sbjct: 305 RELCYEGLKE-------KYDTVDEKLKNRLEYELNVIKEMGYVDYFLIVWDFIRFAKEKD 357 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D DFC +RR EVI Sbjct: 358 IMTGPGRGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERISMPDIDSDFCYERRQEVI 417 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 YV KYG V+QI TFG++ A+A +RDVGRA+ Y +VD++ K+IP P +++ Sbjct: 418 DYVVEKYGENNVSQIATFGTMAARACIRDVGRAMNYSYVEVDKIAKMIPTVPGTSITIDK 477 Query: 492 -IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + + + D ++ L+ I+ KLEGL RH STHAAG+VI PL VP+ ++ Sbjct: 478 ALQLNPELKAIYENDHRINDLINIAIKLEGLPRHTSTHAAGVVIASHPLVNYVPLQKN-- 535 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609 VTQF M +E+ GL+K DFLGL+TLT+++ ++ + + RG+ +DL + FDD E Y Sbjct: 536 EGNIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDLDKLDFDDKEVY 595 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 +++ T+G+FQLES GM + ++PD +EDIIA +SLYRPGP+ I Y + K E Sbjct: 596 NMIGEGKTVGVFQLESDGMTSFMRELKPDSLEDIIAGISLYRPGPMAEIPKYISNKKNPE 655 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI + P ++ +L T G ++YQEQVM++ + L+GYS+ +D++RRAM KK + M++++ Sbjct: 656 KIEYLTPRLEDILSVTYGCMVYQEQVMEVVRKLAGYSMGRSDLVRRAMSKKKHDVMEEER 715 Query: 730 ERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + F+ G +NGI + I IF+ + FA Y FNKSHAAAYAV+++QT Sbjct: 716 KNFVYGIIDESGNIEVPGCVRNGIDEKIGNKIFDSMLDFASYAFNKSHAAAYAVVAFQTG 775 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++ +YP E +AA + M N EK+ + + A++ ++++PP+VN F V NRI + Sbjct: 776 YLMRYYPTECIAAMLNSVMGNSEKVAYYTRYAKEEGMEVLPPNVNESYGKFTVKGNRIRF 835 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK VG +I+EA F +LEDFCS+VD +N+R +ESL+ AGA D F Sbjct: 836 GLAAIKNVGLNAIENIVEARGKKGTFANLEDFCSKVDLSCINKRAMESLIKAGAFDNFQI 895 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R ++L + + ++ N+F E S +I + + E+ Sbjct: 896 FRSRMLAVHEKVLDSINNDKRKNIQGQVNLF-EELEESSLEIQYPNINEFDKKNILSMEK 954 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRGNNIRLAAMVV 1002 + G Y SGHPLD YK + + V+ G + + ++ Sbjct: 955 EMTGLYLSGHPLDEYKNDFKNKVSINISDIVSDKGLEGDLIEGERKVKDGEKVIIGGIIT 1014 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +K TR + ++ + E FP Sbjct: 1015 NVNKKATRSNEMMAFIEVEDLYGTIEVIIFP 1045 >gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP 32953] gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+] Length = 1171 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL +Y +RLD EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 834 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 954 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|118443745|ref|YP_877379.1| DNA polymerase III DnaE [Clostridium novyi NT] gi|118134201|gb|ABK61245.1| DNA polimerase III, alpha chain [Clostridium novyi NT] Length = 1167 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 376/1062 (35%), Positives = 601/1062 (56%), Gaps = 58/1062 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++++ ++AITD +F ++F +KA AGI+PI Sbjct: 6 FVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + + N +VLLV GY+ L+++VS+ + D R Sbjct: 66 IGSEIYVASKSMNIKRN---DRENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L+E +EGLI L+ +G + + + A + L +K +F D Y+ LQ H Sbjct: 122 VDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYHG 180 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +++L+ ++PLVATN+ ++ +ED ++HDVL+ + + DR R Sbjct: 181 IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRYE 240 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P ++ K+ EM FS +PEALENTV+IA C+F H LP F E K+ Sbjct: 241 PQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPE----SKDHF 296 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ++ GL+VR + + ++RL++EL VI +M + YFLIV DF +++ Sbjct: 297 EYMKELCYKGLKVRYPE-------ITPELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 349 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR Sbjct: 350 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP + Sbjct: 410 EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + +EA D V L+++++ LEGL RH STHAAG+VI +PL VP+ ++ Sbjct: 470 -KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 + VTQF M +E+ GL+K DFLGL+TLT+++ ++D + ++ ++DL I F+D Sbjct: 529 --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKINFEDEN 586 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y +L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y KN Sbjct: 587 VYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I + P ++P+L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK + M++ Sbjct: 647 PKDIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706 Query: 728 QKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 +++ FI G +NGIS+ +A I++ + FA Y FNKSHAAAYAV++Y Sbjct: 707 ERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAYAVVAYY 766 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++ +YP EF+AA + N +K+ + + A+Q I+++PP +N F V + +I Sbjct: 767 TAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFTVQNGKI 826 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+AIK VG +I + + F+S DFC+++ S +N+R++ESLV AGA DCF Sbjct: 827 RFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGAFDCF 886 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFE 953 G R Q+L + I K + ++F F D +I + + Sbjct: 887 GIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKKSKLA 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991 E+ + G Y +GHPL+ Y+ +L+ + + Sbjct: 947 MEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQNSKIKD 1006 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ + +K TR S + ++T + E FP Sbjct: 1007 GDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048 >gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586] gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A + Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+SR Y Sbjct: 60 AGIKPIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E G+++L+GG G I + + + E+ + +++ F R Y+ Sbjct: 110 GADGPTIDREWLVE-HQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA H LP+VATN+ F+S++D+EAH++ +A+ + Sbjct: 169 ELTRTGRPDEESYLHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVMCAKKGLEERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K L Sbjct: 523 TDFAPLYCDQEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K G+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F T + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|313888087|ref|ZP_07821761.1| DNA polymerase III, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845777|gb|EFR33164.1| DNA polymerase III, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1141 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 370/1049 (35%), Positives = 597/1049 (56%), Gaps = 48/1049 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL +HS YSLL+G+ ++ + ++ A+A+TD N++ A+ F + Sbjct: 1 MNN---FVHLHLHSEYSLLDGSTRISLLPQRVKDLGMDAVALTDHGNMYGAIAFYKACKD 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+GC++ I +D K ++LL EG++ ++++VS Y +D Sbjct: 58 AGVKPILGCEVYISEKDMTVKDRTNKR-----YHLILLAENNEGFKNIMKIVSTGY-VDG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 R+ L++ ++G+I + G + +A + A+K L ++ +FG+ + Sbjct: 112 YYYKPRVDKEVLKKY-SKGVIATSACLGGEVQKALLNRDKEAAKKAALEYRDIFGEGNFF 170 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R ++V L+ +LPL A+N+ +L +ED ++HDVL+ + V+ Sbjct: 171 LELQDHGMPEQARVNRELVLLSEELDLPLTASNDVHYLMKEDSKSHDVLLCIQTGKTVND 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR + + + YLK+ EM ++F + PEALENTV+IA RC+ ++ H LP FI + Sbjct: 231 TDRMKFPSDEFYLKSPDEMAALFPENPEALENTVKIAERCNVEIKFHDLHLPEFIVPDG- 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E L+ A+ G+ R + ++R +FE N I M + YFLIV Sbjct: 290 ---YSHEEYLKKLALEGMIKRYEN-------VTDEIKERFEFEFNTIKNMGYVDYFLIVW 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A+K+ I VGPGRGS AGS+ +Y L ITD+DPL F LLFERFLNP+R+SMPD DID Sbjct: 340 DFIRYARKHEIQVGPGRGSAAGSMVSYCLGITDVDPLEFDLLFERFLNPERVSMPDIDID 399 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV KYG VAQI+TFG++ A+ A+RDVGRAL M Y++VD + K +P Sbjct: 400 FCYERREEVIDYVNRKYGDSHVAQIVTFGTMAARNAIRDVGRALDMSYAKVDYIAKQVPQ 459 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ F+ + L++++ KLEGL RH STHAAG+VI L++ Sbjct: 460 ALNMTIE-KALEVSETFKGIYDGEEDSRLLIDMALKLEGLPRHTSTHAAGVVISKDELTE 518 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 VP+ R+ + TQFNM +E+ GL+K DFLGL+TLT+++ +++ + + ++ Sbjct: 519 YVPLTRN--DKIIATQFNMIELEELGLLKMDFLGLRTLTVIRDAINLIKENQGKTINFDN 576 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 ++D E + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I Sbjct: 577 FNYNDPEVLKMFAKSETLGVFQFESSGMRAFLKELKPDEFSDLVAANALFRPGPMKQIPK 636 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+ K I IHP ++P+LK T G I+YQEQVMQI Q + GYSL AD++RRA+ KK Sbjct: 637 FVGSKHDKSTISYIHPKLEPILKSTYGCIVYQEQVMQIVQQIGGYSLGRADIVRRAISKK 696 Query: 721 IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 + M+++++ FI GA NG+ + A I++L+ FADY FNKSH+ AY+V+ Sbjct: 697 KMKVMEEERKNFIYGNKEEGVCGAIANGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVV 756 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y+TAW+K +YP EF+AA ++ ++++++ + ++ ++ I+I+PP++N +F V D Sbjct: 757 AYRTAWLKYYYPREFMAAQISTYTNDIKQVSLYIEEIKRLGIEILPPNINYSYKNFTVED 816 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889 N+I + L A+K VG I+ P+ SL+DF R+ D LN+R +ESL+ G Sbjct: 817 NKIRFGLKAVKNVGDNLIDVIVRTRDKGPYKSLKDFVDRINALDKSALNKRAVESLIRCG 876 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A+D F +R Q L + I + KN ++F L + Sbjct: 877 AMDDFRGNRAQYLAIYEGILSSSSNTAKNNVMGQFSLFEEADLQED----LPRLRDFPQK 932 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRGNNIRLAAMVVSK 1004 + + E+ V+G Y SGHPLD Y+ ++ K + +R + +++ ++ SK Sbjct: 933 DKLDMEKEVIGMYISGHPLDPYRELIEKNSSINTNQIFEKYRENLLRRSKVKVGGILKSK 992 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+ + + + E FP Sbjct: 993 KTMITKTNKMMAFAALEDLFGTIELVIFP 1021 >gi|253687352|ref|YP_003016542.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1160 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 419/1049 (39%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ + + + +L EGYQ L L+S+ Y Sbjct: 60 AGIKPIIGADFCVESDE----------LGDELAHLTILAMNNEGYQNLTLLISQAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I +WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ Sbjct: 110 GAAGPTIDRNWLIE-HREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V+LA H LP+VATN F+S +D++AH++ +A+ + Sbjct: 169 ELIRTSRPDEESYLHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVECSKKGLEERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|310823737|ref|YP_003956095.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1] gi|309396809|gb|ADO74268.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 1185 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 412/1048 (39%), Positives = 600/1048 (57%), Gaps = 37/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA+ + +++ + ++A+TD N+F+ ++F +KA AGI+P Sbjct: 2 SFTHLHLHTLYSLLDGAIRMKDLIKTVKDKGMSSVAVTDHGNMFATIDFYKKAKDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + ++L+ AEGY L L S Y+ D Sbjct: 62 IIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYANLRYLSSTAYM-DGFYYHP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 RI L + ++GL LT G + A F A + +K +F ++ +Q Sbjct: 116 RIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAATEYKDIFEPGHFFLEVQS 174 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + + QL+ ++PL AT ++ ++ ED AH++LM +A +S R R Sbjct: 175 NGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLSDGKRLR 234 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + D Y+ + EM+ F D PEA+ NT IA +C+ L++ P+LP F + Sbjct: 235 HSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLGKPMLPTFKVPD----SHT 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ + A GL R + A + YR RL+ ELNVI +M FSGYFLIV DFI Sbjct: 291 PDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNVIQKMGFSGYFLIVQDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQD Sbjct: 351 WAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERFLNPERVSMPDFDIDFCQD 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI+YV KYG V QIITFGSL+AK+ LRDV R +P+S+ DR+ KL+P Sbjct: 411 RRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPEVLGI 470 Query: 486 PVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYRHASTHAAGIVIG 535 + I ++R +E + +LEI+ LEGL+R HAAG+VI Sbjct: 471 TLKEA-IEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGVVIA 529 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 D+PL + VP+Y+ +TQF +E AGL+KFDFLGLKTLT++Q +LD + + Sbjct: 530 DKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQNALDLINRNPPN 589 Query: 596 VD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 IP D + L+ T G+FQ+ESSG + + ++P C ED+IA +LYRP Sbjct: 590 GKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMKLKPSCFEDVIAAGALYRP 649 Query: 653 GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+D+ +V + NRK+G+E + HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L A Sbjct: 650 GPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRA 709 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK E M ++ F+ G KN + +A IF+L+ KFA+YGFNKSH+AAY Sbjct: 710 DLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYG 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+ TAW+K H+PVEF+AA +T E DN +K+ + +AR+ Q++PP VN + F Sbjct: 770 LITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREAGHQVLPPDVNQSDMAFGA 829 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 D +I + L AI GVG I+EA D F L DFC RVDS+++N++VLE+LV AGA Sbjct: 830 VDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERVDSRRVNKKVLEALVKAGA 889 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSV 945 D R QL ++++ +K++ ++F G + K + Sbjct: 890 FDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAGPAAGGGGGMKDDYAQVEE 949 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 R E+ +GFY SGHPL Y L++ + R I + +V + + Sbjct: 950 WPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQRARRDEKITVGGIVAALR 1008 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+ G R+ WVT + + E FP Sbjct: 1009 ERPTKTGKRMAWVTLEDLSGSIELVCFP 1036 >gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972] Length = 1159 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G + + + + + +L GY+ L L+S YL Sbjct: 60 CGVKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + EGLI+L+G G I RA + + EK + ++ F D Y+ Sbjct: 110 VQNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA ELP+VATN+ +F+ + ++AH++ +A+ + Sbjct: 169 ELVRTGRADEENYLHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSAQQYLRSEEEMCELFDDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + Y +RL+ EL VI +M F GYFLI Sbjct: 284 EGMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ K+I Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + +E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP D ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F SGA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ SLD+ K A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K E++ T R ++ +A +V++ Sbjct: 943 EWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030 >gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218] Length = 1159 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G + + + + + +L GY+ L L+S YL Sbjct: 60 CGVKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + EGLI+L+G G I RA + + EK + ++ F D Y+ Sbjct: 110 VQNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + LA ELP+VATN+ +F+ + ++AH++ +A+ + Sbjct: 169 ELVRTGRADEENYLHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + Y +RL+ EL VI +M F GYFLI Sbjct: 284 EGMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ K+I Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + +E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP D ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F SGA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ SLD+ K A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K E++ T R ++ +A +V++ Sbjct: 943 EWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030 >gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)] gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)] Length = 1159 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNIGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030 >gi|225571413|ref|ZP_03780409.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053] gi|225159889|gb|EEG72508.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053] Length = 1159 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 377/1048 (35%), Positives = 570/1048 (54%), Gaps = 40/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A AG++P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECISRVKELGMDSVAITDHGVMFGVIDFYRAAKEAGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + G + +VLL GY L++LVSR + + Sbjct: 62 VLGCEVYVAPGSRFDKEA-GGSGEDRYYHLVLLAENDMGYHNLMKLVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L L+E EG+I L+ +G + R A+ ++ +FG+ ++ LQ Sbjct: 120 RVDLELLEEYH-EGIIALSACLAGEVQRNIMRGMYSEAKAAAQRYEGIFGEGNFFLELQD 178 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++L+ + LVATN+ + E+D + HD+L+ + ++ +DR R Sbjct: 179 HGMQEQKMVNQSLLRLSQETGIELVATNDIHYTYEDDVKPHDILLCLQTGKKLADEDRMR 238 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT +IA RC+ ++ LP++ E Sbjct: 239 YEGGQYYIKSEEEMRRLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR GL+ R G + +RL++EL+VI M + YFLIV DFI++ Sbjct: 295 SWEYLRKLCFEGLKRRYPDG-------EEALAERLEYELSVIQSMGYVDYFLIVWDFIKY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 348 AKDHDIIVGPGRGSAAGSIVSYCLDITSIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGR + +PY+ VD + K++P + Sbjct: 408 RQEVIDYVVEKYGSDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKMVPTELNMT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A + R D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 468 LE-RALAMNPELRRVYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAVDEYVPLS 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 TQF M +E+ GL+K DFLGL+TLT++Q + G +D+ I +DD Sbjct: 527 LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAQLAGVSTGQPIDMDNIDYDD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + T T GIFQLES GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 586 KKVLSSIGTGRTDGIFQLESGGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 646 NNAQSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G KNGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 706 KKERQNFVYGNEEEGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIY 836 W+K +YPVEF+AA MT +DN K+ ++ +Q I+IMPP +N +F V + RI Sbjct: 766 WLKYYYPVEFMAALMTSCIDNPGKVAEYIYTCRQQMGIEIMPPDINKGLGNFTVENGRIR 825 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y LAAIK +G I+ A PF +L+DF R+ K++N+R LE+ + +GA D G Sbjct: 826 YGLAAIKSIGRPVIDAIVSERGAGGPFKTLKDFIERMSGKEVNKRTLENFIKSGAFDSLG 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953 +R Q + I K +F E I L Sbjct: 886 GTRKQFMIIYVQILDQVNQERKYSMTGQMTLFDMVDEDQKAEFDIPLPDVGEYEKENLLS 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHP++ Y+ +K + + G + ++ K Sbjct: 946 FEKEVLGIYLSGHPMEEYEEKWKKSITRTTLDFQLDEETGQTKVHDGAQEVVGGIIADKT 1005 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + A E FP Sbjct: 1006 IKYTKNNKTMAFLTLEDLAGTVEVVVFP 1033 >gi|325263157|ref|ZP_08129892.1| DNA polymerase III, alpha subunit [Clostridium sp. D5] gi|324031550|gb|EGB92830.1| DNA polymerase III, alpha subunit [Clostridium sp. D5] Length = 1157 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 374/1047 (35%), Positives = 573/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YSLL+G+ + + ++ + AITD ++ ++F ++A GI+P Sbjct: 2 DFAHLHVHTEYSLLDGSNKIREYVARVKELGMNSAAITDHGVMYGVVDFYREAKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G +VLL GY L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPNSRFDREISGG--DDRYYHLVLLAENNIGYANLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L+E EG+I L+ +G + R + A+K L ++ +FG ++ LQ Sbjct: 119 RVDKALLEEYH-EGIIALSACLAGEVQRYLTKGLYEEAKKSALEYQDIFGKGNYFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++Q++ ++ LVATN+ + ED + HD+L+ + + ++ ++R R Sbjct: 178 HGIPEQTLVNQKLLQMSEELDIELVATNDVHYTLAEDEKPHDILLCIQTAKKLADENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F +ALENT IA RC ++ LP++ + Sbjct: 238 YEGGQYYVKSPEEMAHLFPYALQALENTQRIANRCEVEIEFGVLKLPKYDVPDG----LT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GLE + L++ELN I M + YFLIV DFI++ Sbjct: 294 AWEYLNKLCFEGLEKHYENPSEELRER-------LEYELNTIKNMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDNGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG+L A+ +RDVGRA+ +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRAMDLPYAFVDTIAKMIPTELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V L+++S++LEGL RH+S HAAG+VI + + + VP+ Sbjct: 467 ID-KALKMNPELRKTYETDEQVKYLIDMSKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R + TQF M +E+ GL+K DFLGL+TLT++Q ++ + + +D+ I ++D Sbjct: 526 RA-QDGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLVKHKNPGLDMDQIDYNDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T T GIFQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y KN Sbjct: 585 DVLDYIGTGKTDGIFQLESAGMKSFMKELKPHSLEDIIAGISLYRPGPMDFIPQYIRGKN 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 645 DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704 Query: 727 KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA+ Sbjct: 705 KERQIFVHGDEENGVPGCVANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEF+AA MT ++N K+ ++ RQ +I+I+PP +N DF V + I Y Sbjct: 765 LKYYYPVEFMAALMTSVIENPPKVAEYIYTCRQMDIKILPPDINRGVADFSVDEGNIRYG 824 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896 LAAIK VG I+ + PF +LEDF SR+ K LN+RV+E+ + AGALD Sbjct: 825 LAAIKSVGKPVIEAIVSDRNEFGPFKNLEDFISRMSVKDSLNKRVIENFIKAGALDGLDG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I ++ +K ++F ++ +I L Sbjct: 885 TRKQFMSIYVQIVEHVNQEKKYAMTGQMSLFDLVDDEQKSEFEIKLPDVGEYTKENLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ + RK + G + M+ K Sbjct: 945 EKEVLGIYISGHPLEEDEEKWRKSISATTADFQPDEETGTTKVHDGAKEIIGGMITDKTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1005 KNTRNNQMMAFLTLEDLLGTVEVVVFP 1031 >gi|320159593|ref|YP_004172817.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1] gi|319993446|dbj|BAJ62217.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1] Length = 1321 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 382/1043 (36%), Positives = 575/1043 (55%), Gaps = 35/1043 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G + ++ + PA+AITD +F +EF Q A AAGI+P Sbjct: 2 SFAHLHVHTQYSLLDGFSNPKQLVARAKEMGMPAVAITDHGTMFGVIEFFQAATAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + +M ++ + ++LL GYQ L+++ S L + + Sbjct: 62 IIGLEAYMAAR---RMQDRDPKLDKSSFHLLLLAENQTGYQNLLKIASAAQL-EGFYYNP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI +L E EGLI TG S I A + A K + ++FG + + LQ Sbjct: 118 RIDHDFLAE-HHEGLICTTGCLSAEIPEALKEGDVERARKLADWYYEVFGAENFFFELQN 176 Query: 189 HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + Q+++L + +ATN+ +++ ED DVL+ + ++S+ R R Sbjct: 177 HDIPELQAVNRQLIELGKRYNARFIATNDVHYINPEDARLQDVLLCIQTGNLLSEPKRFR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++ YL++ EM +F+D+PEAL NT+ IA RC+ L LPRF E Sbjct: 237 MSVDTFYLRSPEEMSRLFADIPEALSNTLLIAERCNVDLTSKGYHLPRFPVPEG----YT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR GL R R+RL++EL VI +M F YFLIV D Q+ Sbjct: 293 AETYLRELCEQGLRRRYG-----TRADDPVVRERLEYELRVIHQMGFDAYFLIVWDLTQY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A++N I RGS AGS+ AY L IT ++P+ L+FERFLNP R+SMPD D+DF D Sbjct: 348 AQRNGIWYN-ARGSAAGSMVAYVLGITMVEPIEHGLIFERFLNPGRISMPDIDLDFQDDL 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R ++ Y ++YG ++VAQIITFG+L AKAA+RDVGR + +P ++VDRL K++ P Sbjct: 407 RPRMLEYCASRYGDDKVAQIITFGTLGAKAAIRDVGRVMDIPLAEVDRLSKMLSTAPNKN 466 Query: 487 VSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+++ + F+ A + L++ + ++EG+ R+A THAAG+VI D P+ Q +P+ Sbjct: 467 VTIREALETVPEFKAAYEEADYLRDLIDTAARMEGVVRNAGTHAAGVVITDEPIVQYLPL 526 Query: 546 YRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599 +R VTQF M IE GL+K DFLGL TLT++Q++ + QR +L Sbjct: 527 HRPTSGSEESPIKTVTQFEMSIIESLGLLKVDFLGLATLTIMQRACQLIEQRHGVRLNLH 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ETY L T G+FQLE SGM + L M+P ++ +IA+V+LYRPGP+D I Sbjct: 587 NIPTDDPETYEFLAQGHTAGVFQLEGSGMTRFLVQMRPQTLDHVIAMVALYRPGPLDFIP 646 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y R +G+E + HP ++P+ KET G+ +YQEQ+M+ A L+GY++SE+D LR+A+ K Sbjct: 647 TYIRRMHGEEPVQYRHPALEPIFKETYGIPVYQEQIMRAAVELAGYTMSESDELRKAIAK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K+++ K +E+FI GA + GI + A IF+ +FA YGFNKSHAA Y VI+ QTA++ Sbjct: 707 KQKDKLLKHREKFIKGAVQRGIDEETAAAIFDDWEEFARYGFNKSHAADYGVIAVQTAYL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834 K HY E++ A ++ + EK+ + DA+ + ++PP +NT DF + D Sbjct: 767 KKHYTAEYMTALLSASKNETEKVAFYVADAKNLGVPVLPPDINTSGWDFTIEDQPDGKPA 826 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L A+K VG I++A + PF SL DF SRVD + + +R LE L+ GALD Sbjct: 827 IRFGLGAVKNVGQNAVEMILQAREEGGPFQSLTDFASRVDLRSVGKRSLECLIKVGALDR 886 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSV 950 FG +R LL+ +D I + + ++ F G D I L + ++ Sbjct: 887 FG-NRKALLEIMDTILNVSASHFRAVSSGQLTFFGATVGANVDAIENIHLPFTTSMDTRE 945 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E E+ ++G Y S HPL+ Y +RK + + + MV +Q +T+ Sbjct: 946 QLEWERELIGLYVSDHPLNPYWNSMRKRLSYYSNQLADLRNHTPVSVGGMVTRFRQHQTK 1005 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 G + +VT + E FP Sbjct: 1006 NGKPMAFVTLEDLRGPIELVIFP 1028 >gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1160 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 599/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ + + + +L GYQ L L+S Y Sbjct: 60 AGIKPIIGADFCVESDE----------LGDELAHLTVLAMNNAGYQNLTLLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ Sbjct: 110 GAAGPTIDRDWLVE-HQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V+LA H +P+VATN F+S +D++AH++ +A+ + Sbjct: 169 ELIRTSRPDEESYLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909] gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909] Length = 1171 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 409/1045 (39%), Positives = 598/1045 (57%), Gaps = 38/1045 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A AGI+ Sbjct: 15 PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + + + +L EGYQ L L+S Y G Sbjct: 75 PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + EGLI+L+GG G + + + ++ L +++ F Y+ L R Sbjct: 125 PIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDQCLEFYQEHFPGSYYLELIR 183 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D V LA LP+VATN+ F++E D++AH++ +A+ + RP+ Sbjct: 184 TGRPDEENYLHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPK 243 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + + Sbjct: 244 NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPTGEMS 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ L K+ GLE RL +Y +RLD EL VI +M F GYFLIV +F Sbjct: 299 TEDFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 359 IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP Sbjct: 419 MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 479 GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + +D+ Sbjct: 538 PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPIDI 597 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + Sbjct: 598 ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657 Query: 659 VV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL AD Sbjct: 658 MVDNFIDRKHGREALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 718 MLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ F V Sbjct: 778 VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPEINSGLYHFHVN 837 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y + AIKGVG I+EA + F L D C+RVD+KKLNRR+LE L+ +G Sbjct: 838 DEGEIVYGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMSG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 A D G R L+ SL K A K ++F + + Sbjct: 898 AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQE 957 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + + E+ LG Y +GHP+ Y + + G + ++ T RG +V++ + Sbjct: 958 QIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVM 1017 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII] gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII] Length = 1171 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RL +Y +RLD EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+RVD+KKLN+R+LE L Sbjct: 834 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 954 PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|167760733|ref|ZP_02432860.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704] gi|167661620|gb|EDS05750.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704] Length = 1158 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 368/1047 (35%), Positives = 569/1047 (54%), Gaps = 39/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ ++AITD +F ++F + A A GI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKECVSRVKELGMDSVAITDHGVMFGVIDFYRAAKAVGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + G + +VLL T GY L+++VSR + + Sbjct: 62 ILGCEVYVAPGSRFDKEAVG-SGDNRYYHLVLLAETDLGYHNLMKIVSRGFT-EGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ + L+E +G+I L+ +G + + + + L ++++FG+ ++ LQ Sbjct: 120 RVDMEILKEFH-QGIIALSACLAGEVQKNIVRGMYEEGKAAALRYQEIFGEGNFFLELQD 178 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ ++++A ++ LVATN+ + ED +AHD+L+ + V+ +DR R Sbjct: 179 HGIQEQKLVNQSLLRMAKETQIGLVATNDVHYTYAEDEKAHDILLCIQTGKKVADEDRMR 238 Query: 248 VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y E + F EALENT +IA RC+ ++ LP++ E Sbjct: 239 YEGGQYYIKSEEEMKTLFPYALEALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL+ R G + ++RL++EL+VI M + YFLIV DFI++ Sbjct: 295 SWEYLNKLCYDGLKERYPDGEGSL-------KERLEYELSVIKSMGYVDYFLIVWDFIKY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 348 ARDHDIMVGPGRGSAAGSIVSYTLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K++P + Sbjct: 408 RQEVIDYVVEKYGSDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDGIAKMVPTELNIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F+ D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 468 LE-RALTVNPEFKRMYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAIDEYVPLS 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 TQF M +E+ GL+K DFLGL+TLT++Q ++ ++ +++ I ++D Sbjct: 527 LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLASRSSGKDINMEQIDYND 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T T GIFQLES GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 586 KAVLDSIGTGRTDGIFQLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+L T G I+YQEQVMQI + L+GY+L +D+LRRAM KK + M Sbjct: 646 NHMDNITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 706 KKERQSFVYGNEAEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT ++N K+ ++ RQ I+I+PP +N F V + I Y Sbjct: 766 WLKYYYPVEFMAALMTSVIENPGKVSEYIYTCRQMGIEILPPDINKGEGSFSVDNGNIRY 825 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK +G + I+ E A F +++DF R+ K++N+R +ES + +GA D G Sbjct: 826 GLAAIKSIGKPVIQAILTEREARGEFKNMKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I K ++F E I L + Sbjct: 886 TRKQFMVIYVQILDQVNQERKYSMTGQMSLFDMVDEDQKAEFDIPLPDVGEYEKETKLAF 945 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHP++ Y+ RK K + G + M+ K Sbjct: 946 EKEVLGVYLSGHPMEEYEEKWRKSISKTTLDFQLVEDTGHTKVSDGAREIIGGMITDKTI 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + +VT + E FP Sbjct: 1006 KYTKNNKVMAFVTLEDMLGSVEVVVFP 1032 >gi|163815364|ref|ZP_02206739.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759] gi|158449338|gb|EDP26333.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759] Length = 1195 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 365/1062 (34%), Positives = 572/1062 (53%), Gaps = 49/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA + ++ + ++AITD ++ +EF + A GI+PI Sbjct: 3 FTHLHVHTGYSLLDGAAKIKELVHRAKELGYDSLAITDHGVMYGVIEFYEACMAEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +VLL T +GY L ++V+R + + R Sbjct: 63 LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAETDQGYHNLSKIVTRGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + + L++ EG+I L+ +G + N + A K + ++ +FG+ ++ +Q H Sbjct: 120 VDMEVLEKYH-EGIIALSACLAGEVATHLRKNDYEGARKAAVKYRNIFGENNYFLEMQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ + V++L+ +P+V TN+S ++ ED+EAHDVL+ + + V ++R R Sbjct: 179 GIPDQATVNAGVMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNRKVQDENRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +YLK++ EM +F EALENT +IA RC+ + +PRF + Sbjct: 239 DGGQYYLKSKEEMAELFPYALEALENTHKIAERCNVKIIFGEQKVPRFDVPDG----YTA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-----DYRQRLDFELNVIARMKFSGYFLIVAD 362 E L G+E + ++ D RQR+D+EL+VI M F YFLIV D Sbjct: 295 EEYLEKLVYDGMERKYGIKYADTEDLSEGDKGYDVRQRIDYELSVIKSMGFVDYFLIVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK N I VGPGRGS GSV AY L IT I+P+++ LLFERFLNP+R+SMPD DIDF Sbjct: 355 FIHFAKTNGIAVGPGRGSAVGSVVAYCLDITTIEPMQYDLLFERFLNPERVSMPDIDIDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RR EVI Y KYG E V QII + ++ A+ +RDVGRA+ +PY+Q D L K IP + Sbjct: 415 CYIRRQEVIDYCVKKYGEECVTQIIAYQTMGARNVIRDVGRAMDIPYAQCDALAKAIPAE 474 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + A+ F++ + +L++I++KLEGL R+A HAAG+VIG + + Sbjct: 475 KDMTID-IALKTSKDFQDMYRGSDEIRKLVDIAKKLEGLPRNAGMHAAGVVIGREAIEEY 533 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 P+ VTQF +E G++K DFLGL+T T++Q ++ + + + D+ I Sbjct: 534 APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVIQDTVKLIKENTGRDLDIDNI 592 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD L+ T G+FQLES GM+ + ++P ++D+IA V+L+RPGP+ I Y Sbjct: 593 DYDDPNILGLMGQGKTEGMFQLESPGMKNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K +E + P ++ +L+ T G IIYQEQVMQI L+GY+L +D++RRAM KK Sbjct: 653 IRGKENRELVRYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712 Query: 722 KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 EEM+K+++ F+ G NGIS+ +A IF+ + KFA+Y FNKSH+ AYAV++ Sbjct: 713 PEEMEKERKNFVYGNKELNVPGCVANGISEDVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 QTA++K +YPVEF+AA ++ +DN K+ K+ +Q N++I+PP +N F + D Sbjct: 773 AQTAYLKYYYPVEFMAALISSVLDNNGKVAKYINVCKQMNVEILPPDINEGVAKFSISDG 832 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y L+ IK VG I+E + F L DF +R+ SK N++ +E+L+ +GA D Sbjct: 833 KIRYGLSGIKSVGAAVVDRIVEERKKNGRFKDLHDFLTRMPSKDTNKKTVEALILSGAFD 892 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950 G +R Q+ +L I + K+R + ++F F+ ++ + + Sbjct: 893 GMGANRKQMFMALPAISEETARERKSRESGQLSLFDIMGEDFAASTRVPYPEVEEYPDTE 952 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------------TIR 991 + E+ VLG Y SGHPL Y +L+K + Sbjct: 953 KLSLEKSVLGVYISGHPLGKYVDLLQKNCTAQSLDFAGDSEDDAELDDAGTDEKDRKIQD 1012 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++ K TR + +VT + + + FP Sbjct: 1013 GAVYVVGGIITDVSVKLTRNNQNMAYVTLEDLVGQIDIVVFP 1054 >gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163] gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163] Length = 1160 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 414/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + + + +L EGYQ L L+S Y Sbjct: 60 AGVKPIIGADFYVESDE----------LGDELAHLTVLAMNNEGYQNLTLLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + R + AE+ + +++ F R Y+ Sbjct: 110 GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V+LA + LP+VATN F+S +D++AH++ +A+ + Sbjct: 169 ELTRTSRPDEESYIHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRHYSPQQYMRSEEEMCELFADIPEALVNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + L + GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTADFLVQCSKKGLEDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031 >gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227] gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227] Length = 1142 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A] Length = 1167 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 526/1029 (51%), Positives = 705/1029 (68%), Gaps = 14/1029 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS K GIQPI Sbjct: 12 FVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFSDKVAGYGIQPI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L +D D + + +VLL + GY+ L+ L SR +L S Sbjct: 72 VGCELAVDFGD----QDANARNAIPLARVVLLATREAGYRNLMRLNSRAFLETPEHCSPH 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL++ EGLI LTGG GP+ AF + S +A R +FGDRLYV LQRH Sbjct: 128 VSWEWLRDE-NEGLIALTGGPDGPVAMAFNADHSALATARCDQLAMIFGDRLYVELQRHG 186 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +R E ++ LAY LPLVATN F + +DYEAHD L+ +A +V++ +R ++T Sbjct: 187 LDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGRLVAETEREQLT 246 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQKE 306 PDH K R+EM +F+D+PEAL +T+EIA RC+F + PILPRF D + + Sbjct: 247 PDHRFKTRAEMAVLFADIPEALASTIEIAERCAFRPRTRKPILPRFTVASDAGAADGKND 306 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E ELR +A GL RLA ++ G +DY +RL FEL+VI RM ++GYFLIVADFI++ Sbjct: 307 EAAELRRQAEEGLAKRLAVHGVSTGMTEEDYGKRLGFELDVITRMNYAGYFLIVADFIKY 366 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ+R Sbjct: 367 AKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQER 426 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA P Sbjct: 427 RGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAP 486 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VS QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVP+ Sbjct: 487 VSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPL 546 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + VDL+ +P DD Sbjct: 547 YRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHVDLATLPLDD 606 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y RK Sbjct: 607 AASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARK 666 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ EM Sbjct: 667 HGEEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRAEM 726 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 +KQ+ F++G+ K+G+ + A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV Sbjct: 727 EKQRAIFVAGSVKSGVPQGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHYPV 786 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ +F +A++ I++ PSVN F+V + I Y+LAA+KGV Sbjct: 787 EFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVSEGVICYALAALKGV 846 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G+ I+EA + F SL DF +RV + +N+RV+ESL AGA D +R ++ Sbjct: 847 GSHAVELIVEARKNGLFTSLADFAARVPPRAINKRVIESLAAAGAFDALEPNRARVFAGA 906 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + I Q + T ++F + I L + + R E +GF+ SG Sbjct: 907 EAILAACQRSHEAMTLGQNDMFGGMAD--APDILLPRVEPWLPADRLRREYEAVGFFLSG 964 Query: 966 HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G + S+P Sbjct: 965 HPLDDYVTALKRLRVQSWVEFSRAVKAGATAGKVAATVVSRTERRTKTGNKMGIIGLSDP 1024 Query: 1024 AKEYEANFF 1032 +EA F Sbjct: 1025 TGHFEAVLF 1033 >gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a] gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101] gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206] gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a] gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101] gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89] gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1] gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11] gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88] gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA] gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299] gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89] gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1] gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11] gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88] gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82] gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA] gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034] gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146] gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327] gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252] gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263] gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299] Length = 1160 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|227873299|ref|ZP_03991564.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227840866|gb|EEJ51231.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 1156 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 359/1048 (34%), Positives = 574/1048 (54%), Gaps = 42/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VHSSYSLL+G+ + ++ ++ +IA+TD ++ ++F ++A GI P Sbjct: 2 AFTHLHVHSSYSLLDGSGKIPEMIARVKELGMDSIALTDHGVMYGVIDFYKEAKKQGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G ++ + + +G +VLL GY L++LVS + + Sbjct: 62 ILGSEIYLSRSMEERFIQKGGAR---YYHLVLLAENDIGYHNLMKLVSLGFT-EGYYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L++ EG+I L+ +G + R + + A++ L ++ +FG ++ +Q Sbjct: 118 RVDYAVLEKYH-EGIIALSACLAGEVSRNLRLSQYEEAKQAALRYEGIFGKGNFFLEMQD 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++L +PLV TN+ + +ED +AHD+L+ + + +DR R Sbjct: 177 HGYAEQKLVNQGMLRLHEETGIPLVVTNDIHYTYKEDAKAHDILLCLQTGKKLMDEDRMR 236 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y+K+ EM +F EALENT +IA+RC + LP++ E Sbjct: 237 YPGGQFYIKSEEEMEELFPYTKEALENTGKIAKRCQVNITFGEYHLPKYPVPEG----HT 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + GLE G Q+ + RL +ELN I+ M F YFL+V D+I + Sbjct: 293 AYSYLEELCLKGLEK-------RYGESWQENKDRLYYELNTISDMGFVDYFLVVWDYIHF 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ AYA+ ITD+DP+ LLFERFLNP+R++MPD D+DF +R Sbjct: 346 AKTHGIAVGPGRGSAAGSIVAYAIGITDVDPMEHQLLFERFLNPERVTMPDIDVDFEYER 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG E+V+QIITFG+L A+ +RDVGR L +PY++ D+L KL+PN+ Sbjct: 406 RQEVIDYVGKKYGKEQVSQIITFGTLAARGVIRDVGRVLDIPYAKCDQLAKLVPNELNMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + ++ + + +++++ +LEGL RH+S HAAG+VI P+S VP+ Sbjct: 466 LEKA-LSVSKELKNLYDTEEETRQMIDMCLRLEGLPRHSSMHAAGVVIAGSPVSDYVPLS 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++Q +L F+ + DL +P+DD Sbjct: 525 RGS-DGSITTQFTMTTIEELGLLKMDFLGLRTLTVIQDALRFIEENHGVKLDLDKLPYDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y +L+ G+FQLES+GM ++ +QP C++DIIA V+LYRPGP+D I Y K Sbjct: 584 AKVYAMLSKGDCAGVFQLESAGMVNFMKRLQPSCLDDIIAGVALYRPGPMDFIPDYIAGK 643 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + ++ +LK T GVI+YQEQVMQI + L+G+++ +D+LRRAM KK M Sbjct: 644 KNPATVHYDCKEMESILKNTYGVIVYQEQVMQIVRDLAGFTMGGSDLLRRAMSKKKTSVM 703 Query: 726 DKQKERFISG--------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 ++ ++ F+ G GIS+ +A I++ + FA Y FNKSHA +YA++SYQTA Sbjct: 704 EEARQSFVYGNAKEGIAGCISKGISEEVANRIYDKMIDFAKYAFNKSHAVSYALLSYQTA 763 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +Y EF AA+M+ MDN K ++ + AR+ I+I+PP + V F V + +I Y Sbjct: 764 YLKYYYAPEFYAATMSSFMDNTVKTAEYIEVAREQGIEILPPDIQLAEVGFSVKEGKIRY 823 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+A+KGVG + A I+ + PF + ED R+ + +NRR +ES + AGA D + Sbjct: 824 GLSAVKGVGRSAAEQIILERKNGPFRNFEDLVQRLSQRGINRRAMESFIHAGAFDNLEGN 883 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFE 953 R + L L + + Q +K++ ++ ++ + Sbjct: 884 RREKLVMLPEVLEDLQKGKKDQIAGQMSLLDLLGEEAEERQEFELIFPDLEEFPKAELLR 943 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005 NE+ LG Y SGHPLD + +L+++ + + + + + M+ Sbjct: 944 NEKDALGVYLSGHPLDSDRALLKQLCSRRARDFSLEAIEEEKNLVDDEHCTVGGMITGIN 1003 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+K + +VT + E FP Sbjct: 1004 RRITKKNDMMAFVTLEDNTGSMEVVVFP 1031 >gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51] gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51] Length = 1164 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 420/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 6 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 65 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG G + RA + Q E+ + ++ F D Y+ Sbjct: 115 VQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 174 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 234 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 289 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 349 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 409 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 469 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 528 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 588 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 648 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 708 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 768 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 828 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 888 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R E E+ LG Y +GHP+D Y L K E+ T R ++ +A +V++ Sbjct: 948 EWPEKARLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035 >gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga thiooxidans DMS010] gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga thiooxydans DMS010] Length = 1161 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 420/1046 (40%), Positives = 617/1046 (58%), Gaps = 33/1046 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL +H+ YSL++G + + ++ +A PA+AITD +NLF+A++ A Sbjct: 1 MSKQ--FVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQ 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G L + + K + VLL EG+ L L+SR Y+ Q Sbjct: 59 AGVKPILGADLRLKDPSDAK----------SSTRFVLLCMNLEGFHNLSRLLSRAYMEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E ++GLI L+GG G + +A + +++L +++LF DR Y+ Sbjct: 109 QLGVPMIEADWL-EGQSDGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYL 167 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R ++ V LA ++P+VA+N+ FL + +EAH+ + + + Sbjct: 168 ELIRTGREDEERFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDP 227 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + YL++ +M+++F D+PEA+ENTVEIA+RC+ L + LP F E Sbjct: 228 RRPRHYSEHQYLRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMT 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 I + E LEV + + + Y +RL EL+VI M F GYFLIVAD Sbjct: 288 IDEFFSEESFKGLAERLEVLFP-DSTQREANKDRYEERLQIELDVINSMGFPGYFLIVAD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+S+PDFD+DF Sbjct: 347 FIQWAKNNAVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV YG + V+QIITFG++ AKA LRDVGR L PY VD+L KL+P + Sbjct: 407 CMDGRDRVIDYVSQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 ++ +A+ + +E + V L++++ +LEGL R+ HA G+VI + L++ Sbjct: 467 LKMTLT-KALEQEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEY 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVD 597 P+Y + V+QF+ +E GL+KFDFLGLKTLT++ +++ + + K+D Sbjct: 526 TPLYCEHNGAGLVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKID 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ +P DD T+ LL T +FQLES GM++ ++ +QPD EDIIALV+L+RPGP+ + Sbjct: 586 ITNLPLDDKPTFDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQS 645 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + NRK+G+ K+ H ++P+L T GVI+YQEQVMQIAQ+L+GYSL AD+LRR Sbjct: 646 GMVDDFVNRKHGRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ++ F+ GA+ I + A IF+L+ KFA+YGFNKSH+AAYA+++YQ Sbjct: 706 AMGKKKPEEMAKQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQ 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP F+AA ++ +MDN +K+ + R + + PP VN + F V D Sbjct: 766 TAWLKAHYPSAFMAAVLSADMDNTDKVVGLIDECRDMKLTVQPPDVNHSKIKFTVEDGTT 825 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I+ F+SL DFC RVD +K+NRRV+ESLV AGALD Sbjct: 826 IRYGLGAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDS 885 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRF 952 G R L SL + A +++ + ++F + +D LE + Sbjct: 886 LGGHRASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLL 945 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------TIRGNNIRLAAMVVSKQQ 1006 ++E+ LG Y SGHP+D Y+ L + K E A + A ++V+ + Sbjct: 946 QSEKETLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRT 1005 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 K++ G R+ ++T + + E F Sbjct: 1006 MKSKNGGRMAFITLDDQSARLEVRVF 1031 >gi|331002659|ref|ZP_08326174.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107 str. F0167] gi|330407072|gb|EGG86576.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107 str. F0167] Length = 1152 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 375/1046 (35%), Positives = 572/1046 (54%), Gaps = 37/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I+ + ++AITD ++ ++F ++A A GI+P Sbjct: 2 SFTHLHVHTGYSLLDGSCKIKEIIRRAKELNMTSLAITDHGVMYGVIDFYKEAKANGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + ++LL +GY+ L ++VS+ + + Sbjct: 62 ILGCEVYVSPASRFEKQAKQG---DRYYHLILLAKNNKGYENLTKIVSKGFT-EGFYYKP 117 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 RI L++ EG+I L+ +G I + A K +K LFG+ Y+ LQ Sbjct: 118 RIDFELLEKYH-EGIIALSACLAGEIPKLISRGRDDEARKVAKKYKDLFGEDSFYLELQN 176 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +V++ ++PLVATN+ +++ ED AHD+L+ + S VS DR R Sbjct: 177 HGIPEQKFVNQVLVKIGKEFDIPLVATNDIHYINAEDAMAHDILLCIQTSKTVSDSDRMR 236 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +LK+ EM ++F PEA+ENT +IA C ++ LP + + Sbjct: 237 YEGGQFFLKSEDEMKALFPYAPEAIENTAKIADMCEVEIKFGETKLPEYPVPDNM----S 292 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + +G E + + +D + R+ +EL VI +M + YFLIV D+I + Sbjct: 293 AKEYLESLCQSGFERNYSADYP----NREDIKSRMYYELGVIEKMGYIDYFLIVWDYINY 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF +R Sbjct: 349 ARGKGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV NKYG ERV QIITFG+LQA+ +RDVGRA+++PY++ D + K+IP D Sbjct: 409 RSEVIDYVVNKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ + +E +D V L++ S KLEGL RHAS HAAG+VI + + + VP+ Sbjct: 469 LE-LALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 D TQF M +E+ GL+K DFLGL+TLT+LQ +L + + DL+ I +DD Sbjct: 528 LG-VDDAITTQFTMTTLEELGLLKMDFLGLRTLTVLQNTLAMVKKNYNIDLDLNNIDYDD 586 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y ++T T +FQLES+GM+ ++ ++P+ +EDIIA +SLYRPGP+D I Y K Sbjct: 587 KKVYEFISTGKTDAVFQLESAGMQSFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIAGK 646 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N K+K+ P + +L+ T G I+YQEQVMQI + L+GY++ +D +RRAM KK M Sbjct: 647 NSKDKVSYDSPQLVSILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHIM 706 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + +++ FI G NGI + +A IF+ + FA Y FNKSHAA YAVISYQTA Sbjct: 707 EMERKNFIYGNEEKGIKGCINNGIEEQVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF+AAS+T DN K+ ++ I+I+PP VN F V + I + Sbjct: 767 YLKYYYPKEFMAASLTSVSDNPAKLAEYIGSLMDMGIKILPPDVNLGEGAFSVDKDGIRF 826 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+ IKGVG A ++ + + +LE+F +R+ K LN+R +ES + AGALD Sbjct: 827 GLSTIKGVGKAVADSLVRERTMNGKYLTLENFINRLPQKDLNKRSIESFIKAGALDGMEG 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954 +R + + + + K + F D + + Sbjct: 887 NRHEKILNAELFIDKKSKESKASIPGQISFFDVVSEEERDSFVSDMIHIEEYPKEELLKY 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQK 1007 E VLG Y SGHPL+ Y +L K + G + + ++V ++ Sbjct: 947 EMEVLGMYVSGHPLEEYISLLEKHCDARSIDFYPDESGNILLESGRKLAVGGLLVEVNKR 1006 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+KG + T + E FP Sbjct: 1007 FTKKGDMMAICTLEDLYGRIELVIFP 1032 >gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus AQ4037] gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus AQ4037] gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329] Length = 1159 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ Sbjct: 110 VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + LA H+LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 1158 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 513/1036 (49%), Positives = 704/1036 (67%), Gaps = 19/1036 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HSSYSLLEGAL + +++ +AD+QPA+A+TDTNNLF ALEFS+KA +AGIQPI Sbjct: 9 FVHLHTHSSYSLLEGALKIGDLVKAASADRQPALALTDTNNLFGALEFSEKAASAGIQPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL + + G +P P +VLL GY L+ L S Y ++ R Sbjct: 69 AGIQLSVLFEAPEPGQRGGPSPLPN---LVLLAKDETGYGHLLRLASLAYFDGPLGEAPR 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L + GLI LTGG GP+D + A RL + FG D LYV +QRH Sbjct: 126 VPIEALTDCAP-GLIALTGGFDGPLDSCLRAARPEHAASRLARLLEAFGEDHLYVEIQRH 184 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E++++ LA H LPLVATN F EDYEAHD L+A+A +VS + R R+ Sbjct: 185 GLPDERTVEAELIALADRHGLPLVATNEPFFAKPEDYEAHDALLAIAEGRIVSDEKRRRL 244 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--- 305 TP H K R+ MV +F DLP+AL +VEIA RC++ ++ PILP F + Sbjct: 245 TPRHDFKTRAAMVELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGLPAGHAPAQAAE 304 Query: 306 --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +E EL+ +A AGL RLAQ A+G QDYR RL +E+ +I +MKF GYFLIV+DF Sbjct: 305 FLDEAGELKRQAEAGLTRRLAQAGPAEGLTEQDYRDRLAYEIGIITKMKFPGYFLIVSDF 364 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC Sbjct: 365 IKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFC 424 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 R+ VI YVQ++YG +VAQIITFG+L A+ LRDVGR L+MPY QVD+L KL+P +P Sbjct: 425 VVGRERVIEYVQSRYGERQVAQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNP 484 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+PV+ QAI + R + A +P V RL+EI++KLEGL+RHASTHAAG+VIGDRPL +L Sbjct: 485 ANPVTLAQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGVVIGDRPLEEL 544 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L +RG+++DL+ +P Sbjct: 545 VPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLKRRGIEIDLATLP 604 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY L +G+FQ+ES+GMR+AL M D ED+IALV+LYRPGP+ NI VY Sbjct: 605 IDDEHTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRPGPMANIPVYC 664 Query: 663 NRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 RK G++ + HP ++P+L ET G+I+YQEQVM++A++L+GYSL +AD+LRRAMG Sbjct: 665 ERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLGDADLLRRAMG 724 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKIK EMD Q++RF+ GA + G+ + A IF+LLAKFADYGFNKSHAAAYA+I+YQTA+ Sbjct: 725 KKIKAEMDAQRDRFLKGAMERGLDRAKADEIFDLLAKFADYGFNKSHAAAYALITYQTAY 784 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPVEFLAASM+ ++D+ +K+ + QDA++ +I++ PPSVN V F+V D I Y+ Sbjct: 785 LKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLDIKVEPPSVNRSGVTFEVHDGTIRYA 844 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LAAIKGVG I++A D+PF L DF R++ + +N+R LESLV AGALD R Sbjct: 845 LAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGAGALDEIEPDR 904 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + +++ + + AQ + ++F + + + + ++ R + E Sbjct: 905 ARAFAAIEPMLRLAQGALEAEAVGMSDMFGGVAAS-DVALRIPAYEPWPAADRLKKEYEA 963 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y +L+K+ ++ + E + GN++ R+AA V+ + +++T+ G++IG Sbjct: 964 VGFFLSGHPLDEYGDLLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSERRTKTGNKIG 1023 Query: 1017 WVTFSEPAKEYEANFF 1032 V S+ +EA F Sbjct: 1024 IVNLSDQTGHFEAIVF 1039 >gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197] gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ +M +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEDMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|188588146|ref|YP_001922465.1| DNA polymerase III DnaE [Clostridium botulinum E3 str. Alaska E43] gi|188498427|gb|ACD51563.1| DNA polymerase III subunit alpha [Clostridium botulinum E3 str. Alaska E43] Length = 1202 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 381/1081 (35%), Positives = 596/1081 (55%), Gaps = 66/1081 (6%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 K FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A Sbjct: 14 NKEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEY 73 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PI+GC++ + + + +VLLV GY+ L+++VS + + Sbjct: 74 GIKPILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGF 129 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L + ++G+I L+ G + + + A++ L +K++F + Y+ Sbjct: 130 YYKPRVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H ++ + ++L+ +PLVATN+ ++ ++ Y++HD+LM + V + Sbjct: 189 IQNHGMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVN 248 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM +FS +PEALENTV+I+ +C++ + H LP+F E + Sbjct: 249 RRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE-- 306 Query: 304 QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348 E N L+N GL R + +K A++ RL++EL +I Sbjct: 307 --EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYELQII 364 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFL Sbjct: 365 KQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFL 424 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ Sbjct: 425 NPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYS 484 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 YS+VD++CK+IP + +A+ + +E D V L+++S+ LEGL RH+STH Sbjct: 485 YSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTH 543 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L Sbjct: 544 AAGVVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKI 601 Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + R + +DL I FDD E Y ++ T G+FQLES GM ++ ++PD +EDIIA + Sbjct: 602 IKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGI 661 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS+ Sbjct: 662 SLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 721 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKF 756 +D++RRAM KK + M+++++ FI G +NGIS+ A IF+ + F Sbjct: 722 GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMDF 781 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ+ Sbjct: 782 ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 841 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875 +PP +N F V I + LAAIK VG +++ + FDSL DF S++D Sbjct: 842 LPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLS 901 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 +N+R +ESL+ +G D F R +LL + + K + ++FA + + Sbjct: 902 AINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYV 960 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA- 988 +I + + E+ + G Y SGHPLD Y L+ I + E + Sbjct: 961 PEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDD 1020 Query: 989 ----------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + L ++ +K TR + + ++ + E F Sbjct: 1021 NLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVF 1080 Query: 1033 P 1033 P Sbjct: 1081 P 1081 >gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591] gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 420/1049 (40%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ K AA PA+AITD NL ++F A + Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+SR Y Sbjct: 60 AGIKPIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I +WL E GL++L+GG G I + + + E+ + +++ F R Y+ Sbjct: 110 GADGPTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA H LP++ATN F+S++D++AH++ +A+ + Sbjct: 169 ELTRTGRPDEESYLHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVMCAKKGLEERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K L Sbjct: 523 TDFAPLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD ++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDKNSFGMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA + G+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F T + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS] gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A] gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1] gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606] gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718] gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS] gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A] gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1] gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III, core enzyme and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606] gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)] gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407] gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489] gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810] gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810] Length = 1159 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ Sbjct: 110 VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + LA H+LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A] gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638] gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22] gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11] gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1] gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989] gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952] gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9] gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B] gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str. 12009] gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185] gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W] gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271] gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591] gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli] gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli] gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr. W3110] gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A] gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638] gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22] gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11] gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989] gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1] gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952] gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str. 12009] gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1] gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185] gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W] gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W] gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1] gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B] gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11] gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482] gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120] gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007] gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167] gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736] gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271] gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591] gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937] gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 418/1049 (39%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+SR Y Sbjct: 60 AGIKPIIGADFYL----------QSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I +WL E GL++L+GG G I + + + E+ + +++ F R Y+ Sbjct: 110 GADGPTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA H LP+VATN+ F+S++D+EAH++ +A+ + Sbjct: 169 ELVRTGRPDEESYLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPKNYSVQQYMRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE L + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMSTEDYLVMCSKKGLEERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +L Sbjct: 523 TDFAPLYCDPEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA G+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A+ K ++F T + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA + LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112] Length = 1160 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ +KA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|331268630|ref|YP_004395122.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925] gi|329125180|gb|AEB75125.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925] Length = 1168 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 373/1061 (35%), Positives = 591/1061 (55%), Gaps = 57/1061 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++ + ++AITD +F ++F +KA AGI+PI Sbjct: 8 FVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKEAGIKPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +VLLV +GY+ L+++VS+ + D R Sbjct: 68 IGCEIYVASNSMHIKRLDSENR---NHHLVLLVKNEQGYKNLMKIVSKAAI-DGFYYKPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L+E +EGLI L+ +G + + A + L +K +F + Y+ LQ H Sbjct: 124 VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKDKAREVALFYKDIFKEGFYIELQYHG 182 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +V+LA ++PLVATN+ ++ +ED ++H+VL+ + + +DR R Sbjct: 183 IDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMRYE 242 Query: 250 PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P YLK+ EM FS + EALENT +IA C+F H LP F E D Sbjct: 243 PQKFYLKSPEEMYETFSYVSEALENTNKIADECNFDYVFHESKLPNFPLPEGAD----HF 298 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ++ GLE + + ++RL++EL VI +M + YFLIV DF +++ Sbjct: 299 EYMKELCYKGLE-------VRYLEVTDELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 351 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR Sbjct: 352 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 411 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG E V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP + Sbjct: 412 EVIDYVVEKYGKENVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 471 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + +E D + L+++++ LEGL RH STHAAG+VI +PL VP+ ++ Sbjct: 472 -KALEMNPELKEVYDKDMRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVSYVPLSKN 530 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 + VTQF M +E+ GL+K DFLGL+TLT+++ +++ + + K+DL I F+D Sbjct: 531 --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGTKIDLDKINFEDEN 588 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y++L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y KN Sbjct: 589 VYNMLGRGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 648 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I I P ++ +L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK + M++ Sbjct: 649 PKNIEYITPKLEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 708 Query: 728 QKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +++ FI G +NGIS+ A I++ + FA Y FNKSHAAAYAV++Y T Sbjct: 709 ERKNFIYGIEEDGKVVVPGCLRNGISEDAANKIYDQMMDFASYAFNKSHAAAYAVVAYYT 768 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++ +YP EF+AA + N +K+ + + A+Q +I+ +PP +N F V + +I Sbjct: 769 AYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKIR 828 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+AIK VG I+++ + F+S DFC+++ +N+R++ESL+ AG DCFG Sbjct: 829 FGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDCFG 888 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954 R QLL + I K ++F F D +I N + Sbjct: 889 IYRSQLLAVYEKIIDSVVNQRKKNIEGQVSLFGSFDNEFKDTEIKYPAIDEFNKKSKLAM 948 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIRG 992 E+ + G Y +GHPL+ Y+ IL+ + + G Sbjct: 949 EKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIIDESLEENLIDEVSLHVEEQNSKIKDG 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + ++ + +K T+ S + ++T + E FP Sbjct: 1009 DKVIIGGLITNVTRKITKTNSMMAFITLEDLYSSIEVIIFP 1049 >gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739] gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD++I +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQLIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536] gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++R++VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKREQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046] gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088] gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088] Length = 1162 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 4 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 64 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 114 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 173 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 233 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 288 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 348 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 408 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 527 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 587 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 707 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 767 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 827 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 887 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 947 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli] gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA 5905] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGN 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354] gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354] Length = 1162 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 4 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 64 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 114 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 173 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 233 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 288 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 348 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 408 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 527 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 587 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 707 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 767 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 827 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 887 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 947 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str. 11368] gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str. 11368] Length = 1160 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 428/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ + + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43] gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H ++ P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1171 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 412/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A + Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + + +L +GYQ L L+S Y Sbjct: 71 AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + E+ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLI Sbjct: 295 GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933] gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EDL933] gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli] gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli] gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. EC1212] gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044] gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str. 11128] gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str. 11128] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GVAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1171 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 412/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A + Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLI Sbjct: 295 GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171] gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|262197244|ref|YP_003268453.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365] gi|262080591|gb|ACY16560.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365] Length = 1174 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 405/1058 (38%), Positives = 607/1058 (57%), Gaps = 46/1058 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 +F HL +H+ YSLL+GA+ + ++ K+ ++A+TD N+F A++ A G++ Sbjct: 2 SAFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I GC+ I D TN+ +VLL GY+ L L S YL + + Sbjct: 62 MIFGCETYIAASDRFDRTNR------RSYHMVLLAKDQVGYKNLSFLNSMGYL-EGFYYN 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L+E +EGLI ++ G + + + AE L ++ +FG Y+ + Sbjct: 115 PRIDKKILRE-HSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMM 173 Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ + + + + +++ +PLVATN+ ++S++D AH++L+++ S R Sbjct: 174 GNQLEEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRL 233 Query: 247 RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T ++LKN +EM FSD+PEA+ENTV+IARRC+ L + LP + E + Sbjct: 234 RHTVDSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSV-- 291 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ L GLE R + + YR+RL EL VI +M F GYFLIV DFI Sbjct: 292 --ESYLEKVVFDGLERRFRELSEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK++NIPVGPGRGSGAGS A+A+ ITDIDPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 NWAKEHNIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCM 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RRDEVI YV+ KYG + V QI TF L+A+ +RD+ R +++PY++ D+L KL+P+ Sbjct: 410 NRRDEVIDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVG 469 Query: 485 HPVSLQA--IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 I + + DP + LL+++ LEGL RH HAAG+VI + PL + Sbjct: 470 GKSPPVRDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEY 529 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597 VP +R ++ VTQF MK EKAGL+KFDFLGLKTLT++ ++ + ++ D Sbjct: 530 VPCFRG-QNGEIVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFD 588 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656 + I D Y +++ T G+FQLESSG R+ L ++PD +EDI+A V+LYRPGP++ Sbjct: 589 IDKIDKGDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEG 648 Query: 657 -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + RK+G++++ HP ++P+L++T GVI+YQEQVMQIAQ+L+GYSL AD+LRR Sbjct: 649 GMVDDFIERKHGRKRVEYPHPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRR 708 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK K+ M K+K+ F++GA++ G+ +A +F+L+A FA YGFN+SH+AAY ISYQ Sbjct: 709 AMGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQ 768 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830 TA++K HYP EF+A M+ + DN + I KF +AR + + P VN DF V Sbjct: 769 TAYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGED 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 RI + L A+KGVG I+E D+ F S+ +FC RVDS+K NRRV+E+LV +G Sbjct: 829 DTKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSG 888 Query: 890 ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------K 937 A D G R ++ +++ + +++R + ++F D Sbjct: 889 AFDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMP 948 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR 996 T + + E+ LGFY SGHPLD Y+ L + + Sbjct: 949 ETYPEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAA 1008 Query: 997 LAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFFP 1033 + +V + +++ TRKG +I + + + E FP Sbjct: 1009 VGGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFP 1046 >gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39] gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|188996572|ref|YP_001930823.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931639|gb|ACD66269.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 1165 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 374/1044 (35%), Positives = 573/1044 (54%), Gaps = 26/1044 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +HS YSLL+G + + K A+ +TD N+F A+EF ++ G++P Sbjct: 4 DFVHLHLHSHYSLLDGMIKPKELAKKAVEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG + K ++L G++ L++L S Y + Sbjct: 64 LIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT-EGFYYK 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ EGLI T G + + A+K K +FG+ LY +Q Sbjct: 123 PRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYAKRLKDIFGEDLYFEIQV 181 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV---SQKD 244 + ++ +++LA + +V TN+S +L+ ED+ AHDV+ A+ + + Sbjct: 182 NGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSEG 241 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + EM F E L+NT+EIA +C+ + K Sbjct: 242 KAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGY-LFPKFETPEG 300 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 A GLE RL ++YR+RLD+E+NVI +M F+ YFLIV DFI Sbjct: 301 MTPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLIVQDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AKKN IPVGPGRGS GS+ AY L IT++DPL+ LLFERFLNPDR+SMPD D+DFC Sbjct: 361 NYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLKHGLLFERFLNPDRISMPDIDVDFCM 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483 +RR++VI YV+ KYG + VAQIITF +++K +RDV R L PY + D++ K+I P Sbjct: 421 ERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADKIAKMILPGPI 480 Query: 484 -AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +++ + F++ D V LL++++KLEG RH HAAGIVI L + Sbjct: 481 QGSTLTIDENLEAHPDFKKLYETDEKVRELLDLARKLEGSARHTGIHAAGIVIAPGTLDE 540 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R + VD + Sbjct: 541 YVPVYRD-KDGNRATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGIDVDYNS 599 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +PFDD + LL + T G+FQLES GM+ L ++P +++IIA+++L+RPGP+ + +V Sbjct: 600 LPFDDENVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPLMSGMV 659 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG++++EAD LR+A+G Sbjct: 660 DEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTLRKAIG 719 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M K K+RFI GA + G SK +++ + KFA Y FNKSH+ AYA ++Y TAW Sbjct: 720 KKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAW 779 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837 +KT+YP EF A ++ E ++ + + D FNI+++PP VN +F + + +I + Sbjct: 780 VKTYYPEEFFAVKLSTENNDSKFLNLLL-DMENFNIKLLPPDVNKSMPEFAIEEKSKIRF 838 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L+ IKG+G A+ I+E + PF + DFC R D+K N++VLESL+ AGA D G Sbjct: 839 GLSRIKGIGEEVAKSIVEERKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFDFEGID 898 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQ 956 R LL++++ Q +++ ++FA + K E + + E+ Sbjct: 899 RGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKEKLRLEK 958 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009 VLGFY SGHPL+ YK L+ + E + + G+ +++A ++ + KKT Sbjct: 959 EVLGFYLSGHPLNAYKNELKNK-VLKISEIMESAFGDKTFQSGSKVKIAGVIDEIKYKKT 1017 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + S+ + + FP Sbjct: 1018 KSGATMIVFQISDETGQMDVRAFP 1041 >gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019] gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5] gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5] Length = 1160 Score = 793 bits (2049), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA + LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|167628221|ref|YP_001678720.1| DNA polymerase iii alpha subunit, putative [Heliobacterium modesticaldum Ice1] gi|167590961|gb|ABZ82709.1| DNA polymerase iii alpha subunit, putative [Heliobacterium modesticaldum Ice1] Length = 1208 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 385/1078 (35%), Positives = 583/1078 (54%), Gaps = 70/1078 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+GA ++ ++D+ A PA+AITD ++ +EF +KA A G++P Sbjct: 14 RFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKP 73 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + L Q + +VLL EGY+ L LVS+ + + Sbjct: 74 IIGCEVYVASRTMLDRDPQKDSDQ---HHLVLLAKDIEGYRNLTALVSQAHT-EGFYYKP 129 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L ++GLI L+ +G I R + + A +R ++ +FG D Y+ LQ Sbjct: 130 RVDHDRLAR-HSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQD 188 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++LA L LVATN+ ++ +D DVL+ + + +R + Sbjct: 189 HDIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMK 248 Query: 248 VTPDHYLKNRSEMVSI-----------------FSDLPEALENTVEIARRCSFILQVHAP 290 + + +++ DL A Sbjct: 249 FDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQW 308 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + E L G+ R DYR+RL FEL I R Sbjct: 309 RREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGC-------AKRDDYRRRLAFELQTICR 361 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F+GYFLIV DF +A++ I VGPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP Sbjct: 362 MGFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNP 421 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF RR EVI YV +KYG +RVAQIITFG++ A+AA+RDVGR L +P + Sbjct: 422 ERISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLA 481 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VD++ K IP + + +AI R + L+E ++ +EG+ RHASTHAA Sbjct: 482 DVDKVAKAIPAELGMTIE-KAIEISPELRALCQDQ-RISHLVETARAIEGMPRHASTHAA 539 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI PL +P+ R + F +E+ GL+K D LGLKTLTL+ +D + Sbjct: 540 GVVIAPSPLIDYLPVQRGADGGVTTQ-FPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIR 598 Query: 591 Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + RG+++ L +P DD +T+ LL+ +LG+FQLESSG+R L ++P+ +DIIALV+L Sbjct: 599 RSRGLQLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVAL 658 Query: 650 YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+ + + + RK+G+ + +HP ++P+LK+T GVI+YQEQVM+IA L+G++L Sbjct: 659 YRPGPLQSGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTL 718 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD+LRRAMGKK + + +++F+ G + + IS+ A +IF+L+ FA YGFNKSH+A Sbjct: 719 GEADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSA 778 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+I+YQTA++K +YPVEF+A +T D+ EK+ ++ + ++ I+++PP VN +D Sbjct: 779 AYALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEID 838 Query: 828 FKV------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR 880 F V G +I + LAA+K VG I+ A PF SL+DFC+R+D+++ NRR Sbjct: 839 FSVVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRR 898 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-------- 932 VLESL+ AGAL G R LLQ LD + A +++ N+F Sbjct: 899 VLESLIKAGALSSLGK-RRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGE 957 Query: 933 -----------------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + + L + + E+ +LG YFSGHPL+ +P L Sbjct: 958 PFEAGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPWL 1017 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++L ++ + ++ T+KG + + T + + + FP Sbjct: 1018 EQQISMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVLVFP 1075 >gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168] gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168] Length = 1160 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 430/1047 (41%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F +AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G + Q + + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFHV----------QSELMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R +S + E+ + +++ F DR ++ L Sbjct: 112 AGPVIDRDWLIEL-NEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 231 PRNYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MTTEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520] Length = 1160 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNNGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|299143802|ref|ZP_07036882.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518287|gb|EFI42026.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1149 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 369/1048 (35%), Positives = 590/1048 (56%), Gaps = 47/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G+ ++ + +K AIA+TD N++ + F + AGI+P Sbjct: 3 DFVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ I + + ++LL G++ L+++VS + ++ Sbjct: 63 IIGCEVYIADGNYRVFDK-----NMSRFHLILLAENYTGFKNLMKIVSEGF-VNGYYYKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L L++ EG+I + +G + R + AE+ L ++K+FG ++ LQ Sbjct: 117 RIDLDVLRKYH-EGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQD 175 Query: 189 HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++ ++ L+ ++PL+ATN+ +L+ ED +AHDVL+ V T V++++R + Sbjct: 176 HDIKEQKKVNKYLETLSAKLDIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEENRMK 235 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + YLK+ EM FS +AL NTV+IA RC+ ++ H LP F Sbjct: 236 FQTEEFYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHFEVPAGF----T 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ LR GL+ ++ R+++E + I M + YFLIV DFI++ Sbjct: 292 NESYLRFLVDRGLKE-------RYEIINEEISNRVEYEFHTIIDMGYVDYFLIVWDFIRY 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ N I VGPGRGS AGS+ +YAL I DIDPL+F+LLFERFLNP+R+SMPD DIDFC +R Sbjct: 345 ARDNGIVVGPGRGSAAGSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDIDFCYER 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV KYG E VAQI+TFG++ A+ A+RDVGRAL M Y +VD + K +P + Sbjct: 405 REEVIEYVIEKYGIENVAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPEELNMT 464 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ + D RL++++ K+EGL RH STHAAG+VI ++ VP+ Sbjct: 465 IK-DALVVSPSLNKEYNEDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITNYVPLT 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 R+ + TQFNM +E+ GL+K DFLGL+TLT+++ +L+ + + +++D S + +D Sbjct: 524 RN--DKIIATQFNMNELEELGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSSMELND 581 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 ++ TLGIFQ ESSGMR L+ ++PD ED++A +L+RPGP++ I + K Sbjct: 582 SNVLNMFAKAETLGIFQFESSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPKFIESK 641 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + KI +H ++ +LK T G I+YQEQVMQI Q + GYSL AD++RRAM KK M Sbjct: 642 HNLNKISYVHEKLEDILKSTYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKKKMAVM 701 Query: 726 DKQKE-----------RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +++++ + GA +NG+ + A I++L+ FA Y FNKSH+ AY+V++Y Sbjct: 702 EEERQNFIYGKIENGKKICCGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAYSVVAY 761 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TA++K +YP EF+AA ++ M V ++ + ++ ++ I+++PP VN F V N Sbjct: 762 RTAYLKYYYPTEFMAAQISSYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFTVEGNN 821 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGAL 891 I + L AIK + I A F S DF RV +S+ +N+R +E L+ +GAL Sbjct: 822 IRFGLKAIKNMNENFISTIEIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLIKSGAL 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D G +R Q L + KN ++F + ++ DK L K +++ + Sbjct: 882 DSLGGNRAQYLAIYEKTIDNVIGNLKNNVKGQFSLF--DTNSYEDKEVLPKLRDFSTNEK 939 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG------NNIRLAAMVVSKQ 1005 + E+ +LG Y SGHPLD Y ++ M + + + +++ ++ +K+ Sbjct: 940 LDFEKEILGIYVSGHPLDAYIETIKNMNVTNTSIIFENSKNAMRKTDSYVKIVGLLKNKK 999 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + + + + + E FP Sbjct: 1000 TMITKNKKIMAFASLEDLYGQIELVIFP 1027 >gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum SCRI1043] Length = 1160 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 412/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + + + +L EGYQ L L+S Y Sbjct: 60 AGVKPIIGADFYVESDE----------LGDELAHLTVLAMDNEGYQNLTLLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + R + AE+ L +++ F R Y+ Sbjct: 110 GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V+LA + LP+VATN F+S +D++AH++ +A+ + Sbjct: 169 ELTRTSRPDEESYIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRHYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + L + GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTADFLVQCSKKGLEDRLESLFPDPEVRVARRPEYDERLDIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDMVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIATIPLGDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMITKRGNRIGICTLDDRSGRLEIMLF 1031 >gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969] gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969] Length = 1171 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 409/1049 (38%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + R + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGRFILRGNQAQVDQCLEFYQEHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKSKQGLEERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDQKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G + ++ T RG +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 1171 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 412/1049 (39%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A + Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + + +L +GYQ L L+S Y Sbjct: 71 AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + E+ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLI Sbjct: 295 GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG + ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|326201799|ref|ZP_08191670.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325988399|gb|EGD49224.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1158 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 370/1055 (35%), Positives = 589/1055 (55%), Gaps = 50/1055 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + +++ ++ +IAITD ++ ++F ++A GI+PI Sbjct: 4 FVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSIAITDHGVMYGVVDFYKEAVKNGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ ++ + +VLL GY+ L+++VS + + R Sbjct: 64 LGCEVYTAKRNMKDKQPGIDS---NYGHLVLLAKNQIGYKNLMKIVSLGFT-EGYYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ +EG+I L+ SG I A N + A + ++FG Y+ LQ + Sbjct: 120 VDYETLEKY-SEGIIALSACLSGDIPSAILNNDYERAVELSNNLNRIFGQGNFYLELQHN 178 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++L+ +PLVATN++ +L++E+ ++H++L+ + ++ +R R Sbjct: 179 GISEQNLVNQQLIKLSGELGIPLVATNDAHYLTKENAKSHEILLCIQTGKTINDDNRMRF 238 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y+K+ EM F ++ +ALENTV+IA C+ L+ LP F +E Sbjct: 239 NTDEVYVKSPEEMYDNFKNVKQALENTVKIAEMCNVELEFGKLHLPSFEVEEG----YTP 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR + GL+ R +++ RL++EL+VI++M + YFLIV DFI++A Sbjct: 295 YEYLREQCYKGLKSRYGDNC------SEEIIHRLEYELSVISQMGYVDYFLIVWDFIKYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 349 REQGIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RV+QIITFG++ A+A +RDVGRAL + Y VD + K+IP + Sbjct: 409 QEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDISYGDVDAIAKMIPFQIGMNI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + ++ D L++ ++ LEGL RHASTHAAG+VI P+ + VP+ Sbjct: 469 D-KALEMNQELKKRYETDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPLQL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + TQ +E+ GL+K DFLGL+TLT+++ ++D Q G K+D+ I FDD Sbjct: 528 N--DNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLAEQVHGKKIDIQQIDFDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y ++ T G+FQLES+GM Q ++ +QP+ +EDIIA +SLYRPGP+D I Y KN Sbjct: 586 DVYKMIGDGRTAGVFQLESAGMTQFMKDLQPNSLEDIIAGISLYRPGPMDQIPRYIRNKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I HP+++ +L T G ++YQEQVMQI + L GYSL +D++RRAM KK M+ Sbjct: 646 NPKLIKYHHPMLESILDVTYGCMVYQEQVMQIVRELGGYSLGRSDLVRRAMSKKKISVME 705 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ F+ GA NG+ + A IF+ + FA Y FNKSHAAAYAV++Y Sbjct: 706 QERKNFVYGITDEEGNEVVKGAVNNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVVAY 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K +YPVEF+AAS+ + + +K+ ++ + + NIQ++PP +N V F V + Sbjct: 766 QTAWLKHYYPVEFMAASINSFLGSSDKVSQYVNECKSLNIQVLPPDINESNVKFTVVNKN 825 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + LAAIK VG + ++ + F S DFC R++ + +N+R +ESL+ +GA D Sbjct: 826 IRFGLAAIKNVGENAIKSVIAERQQNGEFSSFLDFCQRIEGRDINKRCVESLIKSGAFDS 885 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRF 952 R +L+ + + K + +IF + ++ Sbjct: 886 LKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDFPDIKEYPANALL 945 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------VATIRGNNIRLA 998 E+ +LG Y SGHPL Y+ IL + + + + Sbjct: 946 SMEKEMLGLYVSGHPLSEYQSILERNVNLYSSDLFVDDENSTDMEVSGKKLQDSMRVTVG 1005 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V K+ K T+ + + ++ + E FP Sbjct: 1006 GIVAYKKTKATKNNNLMAFIYLEDLFGTMELIVFP 1040 >gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012] gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012] Length = 1160 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 619/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GPAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKSAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL N K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|298531048|ref|ZP_07018449.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509071|gb|EFI32976.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1156 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 402/1036 (38%), Positives = 610/1036 (58%), Gaps = 30/1036 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL H+ YSLL+GA+ + ++ + PA AITD N+F +L F +A GI+ Sbjct: 2 SDFTHLHCHTEYSLLDGAIRITDLCARAVDLGMPAAAITDHGNMFGSLNFYLEAKKYGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + +K +VLL EGY L+++V+R +L D Sbjct: 62 PIIGCEVYLAQNHQVK--------DQLRYHLVLLAMDKEGYHNLVKIVTRGWL-DGFYYK 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + +G+I L+ G + + A + L + +F R Y+ ++ Sbjct: 113 PRVDKDIL-KAHNQGIICLSACLQGEVQHVLRRQGFKQARETALQYADIFPGRFYLEMEA 171 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ Q+++++ +LP+VATN+ +L +D +AHD+L+ + ++ V R R Sbjct: 172 NGIPEQMEVNDQLLEMSRETQLPVVATNDCHYLGPDDVQAHDILLCIQTNSKVQDSSRMR 231 Query: 248 VTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D EM FS P+ALEN EI +RC+ ++ PR+ + Sbjct: 232 FDTDQLYYKSVEEMEKEFSHCPQALENVQEIIKRCNLEIETDTFHFPRYT----PSRENT 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + E + + GL+ R + + + YR+RL+ EL +I M F GYFLIV DFI W Sbjct: 288 LDEEFISLSREGLQQRFQE--LPYSVDQKHYRERLEEELEIICSMGFPGYFLIVQDFINW 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLN +R SMPD D+DFC D+ Sbjct: 346 AKSQGIPVGPGRGSAAGSLVAYALRITNLDPIRYNLLFERFLNKERASMPDIDVDFCYDQ 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R++VIRYV KYG + VAQI TFG+++A+A +RDVGRAL M S D++ KLIP + Sbjct: 406 REKVIRYVAEKYGRDSVAQITTFGTMKARAVVRDVGRALGMKLSLTDKIAKLIPEELKMT 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R+ D V RL++I ++LEG+ RHASTHAAGIVI DR + + +P+Y Sbjct: 466 ID-KAMQQEPDLRKMVDEDEDVARLMDICRRLEGMVRHASTHAAGIVISDRAMQEHLPLY 524 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 R + + VTQF+MK +EK GLIKFDFLGLKTLT+L+ +L ++ DL +P +D Sbjct: 525 RGKKDE-VVTQFDMKRVEKVGLIKFDFLGLKTLTVLKDTLAMASRNGQETPDLDSLPLED 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 ET+ LL T G+FQLESSGMR L ++P C EDIIAL++LYRPGP+++ + + Sbjct: 584 PETFKLLGRGLTDGVFQLESSGMRNVLVDLKPTCFEDIIALLALYRPGPLESGMVTDFIK 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G + HP ++P+LKET GVI+YQEQVM+IAQ+L+GYSL + D+LRRAMGKK Sbjct: 644 RKHGLVPVEYPHPELEPVLKETYGVILYQEQVMKIAQVLAGYSLGDGDILRRAMGKKEAS 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M +Q+ +F+ GA ++G+ + A IF+L+ KFA YGFNKSH+AAYA+ISYQTA++K H+ Sbjct: 704 VMARQRSKFLQGAKEHGVKQETAEYIFDLVEKFAGYGFNKSHSAAYALISYQTAYLKAHF 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF+AA +T E++N +K+ R I ++PP +N+ +F V +N++ + L+ IK Sbjct: 764 PSEFMAALITSEVNNTDKVIAHVNACRDMEITVLPPCINSSLNEFSVENNQVRFGLSGIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG + I+ + PF++L DFC RV S+K +RVLE L+ +GA+D G SR LL Sbjct: 824 NVGRSAIEAIIRERKKNGPFENLLDFCERVGSRKAGKRVLEMLIKSGAMDTLGCSRRALL 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENEQ 956 +D + AQ KN+ ++ + + + + E+ Sbjct: 884 DGMDMVAARAQRSAKNKVKGQLSMLSLLGEETCQVKGLGLDCPENELEEFQEDEKLKLEK 943 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGFY SGHPL ++ ++++ + +E + G + L ++V K++ ++KG ++ Sbjct: 944 EALGFYLSGHPLLPFRRDIQRLKLSTIQECLELRPGTQVELPVIIVGKKEHVSKKGDKMA 1003 Query: 1017 WVTFSEPAKEYEANFF 1032 + + E F Sbjct: 1004 FCQIEDLTGTAEVTIF 1019 >gi|251778887|ref|ZP_04821807.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083202|gb|EES49092.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1202 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 379/1077 (35%), Positives = 594/1077 (55%), Gaps = 66/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A GI+P Sbjct: 18 DFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYGIKP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + +VLLV GY+ L+++VS + + Sbjct: 78 ILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 133 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L + ++G+I L+ G + + + A++ L +K++F + Y+ +Q H Sbjct: 134 RVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLEIQNH 192 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++L+ +PLVATN+ +L ++ Y++HD+LM + V +R R Sbjct: 193 GMDEQRKVNEENIKLSKELGIPLVATNDVHYLKKDGYKSHDILMCIQTGKTVDDVNRRRY 252 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +FS +PEALENTV+I+ +C++ + H LP+F E + E Sbjct: 253 PSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE----EP 308 Query: 308 ENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARMK 352 N L+N GL R + +K ++ RL++EL +I +M Sbjct: 309 YNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSVKELIDRLEYELQIIKQMG 368 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R Sbjct: 369 YIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPER 428 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ YS+V Sbjct: 429 VSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEV 488 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D++CK+IP + +A+ + +E D V L+++S+ LEGL RH+STHAAG+ Sbjct: 489 DKICKMIPTMLGITIE-KALDFNPELKEIYDKDDRVKSLIDMSKDLEGLPRHSSTHAAGV 547 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L + + Sbjct: 548 VIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKEN 605 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 R + +DL I F+D E Y ++ T G+FQLES GM ++ ++PD +EDIIA +SLYR Sbjct: 606 RNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYR 665 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS+ +D Sbjct: 666 PGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRSD 725 Query: 712 VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760 ++RRAM KK + M+++++ FI G +NGIS+ A IF+ + FA Y Sbjct: 726 MVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASYA 785 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ++PP Sbjct: 786 FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPPD 845 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 +N F V I + LAAIK VG +++ + FDSL DF S++D +N+ Sbjct: 846 INESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAINK 905 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ +G D F R +LL + + K + ++FA + + +I Sbjct: 906 RTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYVPEIE 964 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA----- 988 + + E+ + G Y SGHPLD Y L+ I + E + Sbjct: 965 YPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDDTLEI 1024 Query: 989 ------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + L ++ +K TR + + ++ + E FP Sbjct: 1025 QMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVFP 1081 >gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469] gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509] gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str. E2348/69] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 427/1049 (40%), Positives = 618/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|160893094|ref|ZP_02073882.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50] gi|156865177|gb|EDO58608.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50] Length = 1183 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 373/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YSLL+G+ + +++ + ++AITD ++ ++F + A A GI+P Sbjct: 2 DFTHLHVHTEYSLLDGSAKIKSLVKRAKELGYDSLAITDHGVMYGVIDFYEAARAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + N +VLL +GY+ L ++VSR + + Sbjct: 62 IIGCEIYVSPGSRFDRENT--RGEERYYHLVLLAENNQGYKNLSKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ + L++ EG+I L+ +G + N+ + A++ L K+FG+ ++ +Q Sbjct: 119 RVDMEVLEQYH-EGIIALSACLAGEVAVNLRKNNYEEAKEAALRHLKIFGENNYFLEMQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + V++L+ +P+V TN+S ++ ED+EAHDVL+ + + V +DR R Sbjct: 178 HGLAEQATVNAGVMRLSKELGIPMVVTNDSHYILAEDWEAHDVLLCIQTNRKVHDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T +YLK++ EM +F EAL NT +IA RC+ + +P F + Sbjct: 238 YTGGQYYLKSKEEMYKLFPYAKEALANTQKIADRCNVEIVFGEQKVPEFDVPDG----LT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L + G+ + +RL +E+N I +M + YFLIV+DFI++ Sbjct: 294 AEEYLEKLCMEGIRK-------RYNPVTPELMERLTYEINTIKKMGYVDYFLIVSDFIRY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ AY L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKDHGIAVGPGRGSAAGSIVAYCLEITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG E+V QI+TF ++ A+ +RDVGRAL +PY+ D + K IP + Sbjct: 407 RQEVIDYVVRKYGKEKVVQIVTFQTMAARNVIRDVGRALDLPYALCDSVAKTIPMEIGMN 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ +E + V +L+++++KLEGL R+ HAAG+VIG + + VP+ Sbjct: 467 ID-TALKVSKELKEMYEGNADVKQLIDMARKLEGLPRNTGMHAAGVVIGRDSIDEYVPLA 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 R D +TQF M IE+ GL+K DFLGL+TLT++Q ++ F+ Q V +D+ I +DD Sbjct: 526 RGG-DDSIITQFTMTTIERLGLLKMDFLGLRTLTVIQDAVKFIKQETGVDIDIDHIDYDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + L+T+ T GIFQLESSGM+ ++ ++P +ED+IA +SLYRPGP+D I Y N K Sbjct: 585 KKVFELITSGKTEGIFQLESSGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPNYINGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 EKI P + +L+ T G I+YQEQVMQI L+GY+L +D++RRAM KK + M Sbjct: 645 EHPEKITYDVPELQEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKADVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G GI + A IF+ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 AKERQYFVYGNEELGVPGCIARGIPEATANKIFDDMTDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA M+ DN K+ + Q RQ I+I+PP +N F I Y Sbjct: 765 FLKCYYPVEFMAALMSSVKDNSSKVAGYIQSCRQMGIRILPPDINEGYSGFSAAKGAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 ++ IK VG+ I+E A+ P+ ++DF R+ K+ N++ +E+L+ GA D FG Sbjct: 825 GMSGIKSVGSAVVDRIVEEREANGPYKDMKDFLVRMTPKETNKKTVEALILGGAFDSFGV 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954 R Q++ + + KN + + F + + K + + Sbjct: 885 KRRQMMMAYPMMIDEVYKERKNLSAGQMSFAEFFGGEFAEAAKTKFPDVEEYDEQEKLAL 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--------AAMVVSKQQ 1006 E+ VLG Y SGHPL Y+ ++ + + + R+ MV Sbjct: 945 EKSVLGIYISGHPLLDYEKLMSEKTAFSSVDFMIDEEEGRARVQDQSICILGGMVADVTV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + +VT + + E FP Sbjct: 1005 KMTKNNQNMAFVTLEDMVGQTEIIVFP 1031 >gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 410/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A + Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 60 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGLI+L+GG G + + + ++ L +++ F + Y+ Sbjct: 110 GAAGPIIDRDWLIN-HKEGLILLSGGRMGDVGKFILRGNQVQVDQCLEFYQEHFPNSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 943 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605] gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86] gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GPAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA + LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|154484297|ref|ZP_02026745.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560] gi|149734774|gb|EDM50691.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560] Length = 1161 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 366/1050 (34%), Positives = 574/1050 (54%), Gaps = 37/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ + I + ++AITD ++ ++F + A GI+PI Sbjct: 3 FAHLHVHTEYSLLDGSSKIKEITKRAKELGMNSLAITDHGVMYGCIDFYRAALENGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + ++LL EGY L ++VS+ + ++ R Sbjct: 63 IGCEVYVAPGSRFEK--EAGDNEDRYYHLILLAENNEGYANLCKIVSKGF-VEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ EG+I L+ +G + + + ++ L ++K+FG ++ +Q H Sbjct: 120 VDYEVLEKYH-EGIICLSACLAGEVQKYLARGEYEKGKEAALKYEKIFGKGNYFLEMQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ Q+++++ E+ LV TN+ + +D EAHD+L+ + + +DR R Sbjct: 179 GIPEQATVNQQLMRMSEELEIDLVCTNDVHYTFADDVEAHDILLCIQTGKKKADEDRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK+ EM +F P+A+ENT +IA RC+ + +P F E Sbjct: 239 EGGQFYLKSPEEMYQLFKYAPQAMENTQKIADRCNVTFEFGVTKIPNFPVPEG----YTS 294 Query: 308 ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L+ GL R + ++ +RL++ELN I M + YFLIV DF Sbjct: 295 WTYLKELCETGLHNRYPVFKGEVDQNCHLTKEELEERLNYELNTIKNMGYIEYFLIVWDF 354 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I +AK N I VGPGRGS AGS+ +Y L ITDI+P+R++LLFERFLNP+R+SMPD D+DFC Sbjct: 355 IHYAKSNGIAVGPGRGSAAGSIVSYCLEITDIEPMRYNLLFERFLNPERVSMPDIDVDFC 414 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV KYG + VAQI+TFG+L+A+ +RDVGR L MPY+QVD + K+IP + Sbjct: 415 IERRQEVIDYVGRKYGKDHVAQIVTFGTLKARGVIRDVGRVLDMPYAQVDNIAKMIPQEL 474 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ + + +DP V L+++S++LEGL RHAS HAAG+VI +P+ + V Sbjct: 475 NITLD-GALKQNRELKTLYDSDPEVKYLIDMSRRLEGLPRHASMHAAGVVICGKPVDEYV 533 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ R TQ+ M +E+ GL+K DFLGL+ LT++Q + F+ + RG+++DL I Sbjct: 534 PLSRAA-DGSITTQYIMTTLEELGLLKMDFLGLRNLTVIQNAQRFIKKNRGIELDLMKID 592 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 ++D + + T T GIFQLES+GM+ ++ ++P +EDIIA ++LYRPGP+D I Y Sbjct: 593 YNDKKVLDYIGTGNTEGIFQLESAGMKNFMKELKPQSLEDIIAGIALYRPGPMDFIPKYL 652 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 KN ++ + P + P+L+ T G I+YQEQVMQI + L+GYSL +D+LRRAM KK + Sbjct: 653 EGKNNRDSVTYDCPQLIPILEPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKQ 712 Query: 723 EEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 M+K+++ F+ G KNGIS+ IA I++ + FA Y FNKSHAAAY V++Y Sbjct: 713 AVMEKERQSFVYGNREEGVKGCIKNGISEEIANKIYDEMIDFAKYAFNKSHAAAYGVVAY 772 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +Y EF+AA +T MD K+ ++ R I+I+PP +N F N Sbjct: 773 QTAYLKYYYAAEFMAAMLTSVMDISTKVAEYVYSCRSMGIEILPPDINEGESGFSAKGNS 832 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIK VG I+E + LEDF +R + +N+R +E+ + AGA D Sbjct: 833 IRYGLTAIKNVGKNIIDGIVEEREKHGKYTDLEDFITRTANLGVNKRAIENFIKAGAFDS 892 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVR 951 +R Q++ I K+ +IF + + K+ + + Sbjct: 893 LNATRKQMMMVYIQILDGVNKENKDAWEGQMSIFDMADDSTKEKYKVKMPDVGEYTVDQK 952 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVS 1003 E+ V+G Y SGHPL + RK + + + + ++ + Sbjct: 953 LAFEKEVIGIYASGHPLQAQEQKWRKHITNMSIDFTEPEEGEESKVPDKSKVAVGGIISA 1012 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+ G ++ ++T + E FP Sbjct: 1013 ITKKFTKTGQQMAFITLEDLVGTVEVVVFP 1042 >gi|326791665|ref|YP_004309486.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427] gi|326542429|gb|ADZ84288.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427] Length = 1155 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 397/1047 (37%), Positives = 594/1047 (56%), Gaps = 44/1047 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G+ +N++LD++ ++AITD +F A++F + A I PI Sbjct: 5 FTHLHVHTEYSLLDGSAKINDLLDRVKELGMDSVAITDHGVMFGAIDFYKAAKQRDINPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +VLL +GYQ LI++VS ++ + + R Sbjct: 65 IGCEVYLAARTRFDKEPVD----ARSYHLVLLAENNKGYQNLIKMVSSGFI-EGFYRRPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I + L+E EGLI L +GP+ R ++ + A+ LT +++ G ++ +Q H Sbjct: 120 IDIELLRE-HHEGLIALGACLAGPVSRRLLNDNYEEAKAAALTLEEIMGKGNFFLEIQDH 178 Query: 190 RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ + +Q+ ++LA +P+VATN+ ++ +ED H+VL+ + + +DR Sbjct: 179 GIKDQQKVNQLTLRLAEETGIPIVATNDVHYIKDEDANPHEVLLCIQTGKTMEDEDRMVY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK+ SEM +F EALENT +IA+RC H LP+F E K Sbjct: 239 EGGQFYLKSPSEMAMLFPYAEEALENTNKIAQRCHVDFTFHELKLPKFDVPEG----KTA 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E LR + GL+ + +RL++EL +I +M F YFLIV DFI++A Sbjct: 295 ETFLRERCYEGLKK-------RYETITPELEERLEYELGIIIQMGFVDYFLIVGDFIKYA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGS AGS+ AY L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +RR Sbjct: 348 KDHDIPVGPGRGSAAGSIVAYTLEITNIDPIKYQLLFERFLNPERVSMPDIDIDFCYERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV KYG +RVAQI+TFG+L A+A +RDVGRA+ MPY+ VD++ K+IPN+ + Sbjct: 408 QEVIEYVIRKYGADRVAQIVTFGTLAARAVIRDVGRAINMPYADVDKVAKMIPNELKITI 467 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + RE + + LL+ S KLEGL RH+S HAAG+VI ++P+ + VP+ Sbjct: 468 K-KALNMNDELRELYNTNEQIKYLLDTSMKLEGLPRHSSMHAAGVVISNKPVVEYVPL-- 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + TQ+ M +E+ GL+K DFLGL+TLT++ ++ + + + +D+ I D Sbjct: 525 NASEGVVTTQYPMTTLEELGLLKMDFLGLRTLTVIDNAVKLVKKNHDIDIDIEKIDDHDP 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + Y L+ + T GIFQLES+GM+ ++ + P C+EDIIA VSLYRPGP+D I Y K Sbjct: 585 KVYELIASGNTEGIFQLESAGMKNFMKELAPTCLEDIIAGVSLYRPGPMDFIPKYVQGKR 644 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I HP ++P+L+ T G I+YQEQVMQI + L+GYSL +D+LRRAMGKK + M+ Sbjct: 645 DANSITYTHPALEPILENTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMGKKKIDVMN 704 Query: 727 KQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K++E F + G KN I I IF+ + FA Y FNKSHAAAYAV++YQTA++ Sbjct: 705 KEREIFLYGDGDSVPGCVKNNIPAEIGNKIFDEMVDFAKYAFNKSHAAAYAVVAYQTAYL 764 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 KT+Y VEF+AA MT MD KI + + ++ I+++ P +N F ++I Y L Sbjct: 765 KTYYKVEFMAALMTSVMDVTTKITGYMETCKRMGIEVLSPDINEGHAYFDANGDKIIYGL 824 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIK VG I+E + F SL DF +R++SK N+R +ESL+ AGA D G R Sbjct: 825 AAIKNVGKNVIDRIVEERQRNGRFKSLTDFYNRMESKDTNKRSIESLILAGAFDHLGGRR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQR 957 Q + I KN ++F + DK L +S E+ Sbjct: 885 SQYMAVYKQIANGINLNRKNNIQGQIDLFGLGSEEVVEDKDHLPDIPEFDSKELLNYEKE 944 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRLAAMVVSKQQ 1006 V+G Y SGHPLD + L + ++ G + + +++ K+ Sbjct: 945 VMGIYLSGHPLDKVRGSLERYITLTSDQLAPPSEEEETEEEQIYDGKRVVVGGILIEKKV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T++ ++ ++T + E FP Sbjct: 1005 IFTKQNKKMAFLTLEDTRGVMEIVVFP 1031 >gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str. G5101] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94] gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94] Length = 1160 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + + + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRLDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|282882675|ref|ZP_06291285.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B] gi|281297488|gb|EFA89974.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B] Length = 1145 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 372/1051 (35%), Positives = 583/1051 (55%), Gaps = 50/1051 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YSLL+ + + I + A+A+TD N++ A++F + Sbjct: 1 MSN---FIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKK 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIGC++ + + + +VLL +G + L+++VS + +D Sbjct: 58 VGVKPIIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAF-VDG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L L++ ++G+I + +G + R A+K L ++ +FG D + Sbjct: 112 YYYKPRVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFF 170 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R ++ +L+ + L +N+ +L +ED +A DVL+ + + + Sbjct: 171 LELQDHGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R + T + YLK+ EM +IFSD +A+ NT IA RC+ + LP F Sbjct: 231 EKRMKFPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG- 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L A GL + + R + E I +M F YFLIV Sbjct: 290 ---YTNESYLEKLAKEGLNK-------RYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVW 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AKKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DID Sbjct: 340 DFINYAKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDID 399 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+ Sbjct: 400 FCYERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH 459 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ F+E D L++I++++EGL RH STHAAG+VI PL+ Sbjct: 460 ALKMTLD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTD 518 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600 VP+ R+ + TQFNM +E+ GL+K DFLGL+TLT+L+ ++ VK+D S Sbjct: 519 YVPLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSE 576 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +DD + + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I Sbjct: 577 FTYDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPK 636 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+ K KI IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL AD++RRA+ KK Sbjct: 637 FIESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKK 696 Query: 721 IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ FI GA KNG+ + A I++L+ FADY FNKSH+ AY+VI Sbjct: 697 KMAVMEEERKNFIYGNEKENVCGAIKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVI 756 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y++AW+K +YP EF+AA ++ +++++ + ++ ++ I ++PP+VN +F V Sbjct: 757 AYRSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEG 816 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFA 888 +I + L A+K VG I++A F SL DF +V ++ LN++ LESL+ Sbjct: 817 KKIRFGLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRC 876 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD F +R Q L + + + Q +N +F + + L + Sbjct: 877 GALDDFDGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSL 932 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAAMVV 1002 + E+ V+G Y SGHPLD Y+P L E + +IR+A ++ Sbjct: 933 RDKLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLK 992 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K+ T+ + + + + E FP Sbjct: 993 NKKTMITKTNKVMAFASLEDLFGTIELIIFP 1023 >gi|239626635|ref|ZP_04669666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516781|gb|EEQ56647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1161 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 379/1048 (36%), Positives = 572/1048 (54%), Gaps = 41/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++A+TD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAVTDHGVMYGVIDFYKAAKEAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + +VLL +GY+ L+++VS+ + +D Sbjct: 62 ILGCEVYVAPNSRFDR--ETVSGEDRYYHLVLLAENNQGYENLMKIVSKGF-VDGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L + +G+I L+ +G + R + A + + +FG D ++ LQ Sbjct: 119 RVDYEVLAKYH-QGVIALSACLAGEVQRYLTRGMYEEAVRAAGRYVDIFGKDNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ +++++ L LVATN+ + ED +AHD+L+ + V +DR R Sbjct: 178 HGLPDQKLVNQGLMRMSRETGLELVATNDIHYTFAEDEKAHDILLCIQTGKKVEDEDRMR 237 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y EM ++F P+ALENT +IA RC+ ++ LPR+ E D Sbjct: 238 YEGGQYYCKSEEEMKALFPYAPQALENTHKIAGRCNVEIEFGVTKLPRYEVPEGFD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + G + R + RLD+EL+ I M + YFLIV DFI + Sbjct: 294 SWSYLNHLCREGFKTRYPEDDGTLSS-------RLDYELDTIRTMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I VGPGRGS AGSV +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARSQGIMVGPGRGSAAGSVVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QI+TFG+L AK +RDVGR L +PYS D + K+IPND Sbjct: 407 RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLGLPYSMCDTIAKMIPNDLGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++A D V L+++S++LEGL RH S HAAG+VIG R + + VP+ Sbjct: 467 LD-KALVMNPDLKKAYNEDQQVRNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++Q ++ + + +D+ I FDD Sbjct: 526 RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGISIDVDHIDFDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + T T G+FQLES+GM+ ++ ++ + +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KQVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPRYLKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N KE I P ++ +L T G I+YQEQVMQI + L+GY++ +D++RRAM KK M Sbjct: 645 NDKESITYECPQLEHILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K++ F+ G KNGI + A +I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 EKERHNFVYGNEEEGVKGCVKNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIY 836 ++K +YP EF+AA MT MDNV K ++ R+ I ++PP +N F V I Sbjct: 765 YLKYYYPREFMAALMTSVMDNVGKFSEYILTCRRMMGIPVLPPDINEGESGFSVSGEAIR 824 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+AIK VG I+ PF S+EDF R+ K++N+R LE+ + +GALD Sbjct: 825 YGLSAIKSVGKPVVDVILAERGKGGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953 +R Q + + + K+ ++F A E+ +IT + Sbjct: 885 GTRRQKMAVAPTMLEEKARERKSMFEGQLSLFDIAGEEARNEFQITFPDVGEYSKEELLA 944 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005 E+ +LG Y SGHPLD Y+ R+ + + G+ + + MV K Sbjct: 945 FEKEILGVYISGHPLDDYEEAWRRNITATSADFMVDEETEKAGVQDGSRVVIGGMVAGKT 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1005 VKTTRTNQLMAFITLEDLMGSVEVIVFP 1032 >gi|283850843|ref|ZP_06368129.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B] gi|283573766|gb|EFC21740.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B] Length = 1153 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 416/1037 (40%), Positives = 598/1037 (57%), Gaps = 29/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ + +++ A+ PA AITD NL AL F A AGI+ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRIGDLVKTAASFGSPAAAITDHGNLHGALIFYDYAKKAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + + P +VLL GY+ L++LV+ + + Sbjct: 62 PIIGCEVYVTAASR-----HDRDPRNPRYHLVLLAQNLAGYKNLLKLVTLGHT-EGMYYK 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + G EGLI L+ G I++ A + LF DR Y +Q Sbjct: 116 PRVDKELLGKYG-EGLIALSACLKGEINQRLLKEGKDQAVACAREYMALFPDRFYFEIQA 174 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++ L+ ++PLVATN+ +L ED EAHDVL+ + + V R R Sbjct: 175 NGIPEQQTVNDFLIDLSDDLKVPLVATNDCHYLRAEDAEAHDVLLCIQTAACVDDAKRMR 234 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T EM F+ +P+AL NT EIA R L+ P + K Sbjct: 235 FTTKDLYYRSPDEMAEAFAHVPQALANTCEIAERVDLSLKFGDYHFPVYKTPPG----KS 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ + + A GL RLA+ A + Y RL+ EL+VI +M F GYFLIV DFI W Sbjct: 291 LDDVMADMARQGLRDRLAKMPDA---EPKKYWDRLELELDVIKQMGFPGYFLIVQDFINW 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ R Sbjct: 348 AKDHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERR 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV +YG VAQI TFG+++AK +RDVGRAL M + + DR+ KLIP++ Sbjct: 408 RYEVIRYVTERYGENAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPDELKMT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + DP V L++IS++LEGL RHASTHAAG+V+ D +++ VP+Y Sbjct: 468 ID-KALEREPELKVLMRTDPRVGHLIDISKRLEGLARHASTHAAGVVVSDTAMTEYVPLY 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + +++ VTQ++MK +EKAGL+KFDFLGLKT+T++ +L + DL +PF D Sbjct: 527 KG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDALKIIEGMGVTPPDLDTLPFTD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 +TY L T GIFQ+ES GMR+ L ++P+C ED+IA+++LYRPGP+ + +V + Sbjct: 586 EKTYELFAKGDTDGIFQVESQGMRKYLRMLRPNCFEDLIAMLALYRPGPLGSGMVEQFIR 645 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G++ + HP ++ LK T GVI+YQEQVM+IAQ+L+ +SL D+LRRAMGKK E Sbjct: 646 RKHGEDPVEYPHPRLEETLKPTYGVIVYQEQVMKIAQVLASFSLGAGDLLRRAMGKKNAE 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM KQ++ F+ G + NGI A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 706 EMGKQRQFFVDGCAGNGIEAKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHY 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PV F+AA MT +M+N +K+ ++ R +I++ PP VN F V DN+I Y LAA+K Sbjct: 766 PVAFMAALMTSDMENQDKLLQYIAACRDNDIELCPPDVNAGLPHFSVKDNKILYGLAAVK 825 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 +G I+ A+ PF SL DF SRV+ +K+ +RV+E L+ GA D FG SR L+ Sbjct: 826 NIGRDAVAEIVAEREANGPFTSLLDFTSRVNMRKVTKRVIEYLIKCGACDGFGCSRAGLV 885 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956 LD Q ++ + ++ + L E+ Sbjct: 886 AGLDQAAALGQKRAADKNDGRLSLMTLMPEKPKPTVGLGLSCPEATLPEWLHEEMMAFEK 945 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGFY + HPL Y+ LR M + G +++A + VS ++ T+KG ++ Sbjct: 946 EALGFYLTSHPLLAYERDLRAMRTTTLAQCAGIEPGVEVKVACICVSTKEIITKKGQKMA 1005 Query: 1017 WVTFSE-PAKEYEANFF 1032 + + E EA F Sbjct: 1006 FCKLEDHLGGEAEAVVF 1022 >gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143] gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW] gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW] Length = 1165 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 506/1048 (48%), Positives = 701/1048 (66%), Gaps = 28/1048 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F+HL+VHS+YSL EGA+ + ++ PA+A+TDT NLF LEF+ A AGIQ Sbjct: 2 SDFIHLRVHSAYSLSEGAIKVKELVKLCQKQGMPAVAVTDTGNLFGCLEFAMAAADAGIQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGCQ+ I + G+T P +VLLV + +GY+ L++LVS+ YL + Sbjct: 62 PIIGCQMWI-RSWGPQKRGLGRTTGPAADQLVLLVQSQQGYRNLMKLVSKAYLETEPGLL 120 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 ++ + L E +EGLI LTGG G + R AE+ LL LF RLYV L R Sbjct: 121 PQVSVDDL-EGHSEGLICLTGGPGGGVGRLLAEGQKPHAEELLLRLAALFPGRLYVELMR 179 Query: 189 H-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 H + E ++ LAY H+LPLVATN+ F ++AHDVL+ +A + Q+ Sbjct: 180 HPEGPMGQAEDRIEPDLIDLAYAHDLPLVATNDVYFADPGMHQAHDVLLCIAEGAYIMQE 239 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R RVTP H K+ +EM +F+DLPEA++NTV IARRC+++ + PILP F+ + + Sbjct: 240 ERRRVTPHHCFKSAAEMRELFADLPEAVDNTVVIARRCAYMPKKVNPILPAFVPGDSKEA 299 Query: 304 QKE-EENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSG 355 Q+E E +ELR +A GL RL + + YR+RLDFELN I +MKF G Sbjct: 300 QEELEADELRRQAHEGLTWRLEKYVFTPDQTPETRTEIEAQYRERLDFELNTIVKMKFPG 359 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+DFI+WAK IPVGPGRGSGAGS+ A++L+ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 360 YFLIVSDFIKWAKGQGIPVGPGRGSGAGSLVAWSLSITDLDPIRYGLLFERFLNPERVSM 419 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFCQDRRDEVIRYVQ KYG+++VAQIITFG LQA+A +RDVGR LQMPY QVDR+ Sbjct: 420 PDFDVDFCQDRRDEVIRYVQRKYGYDKVAQIITFGKLQARAVVRDVGRTLQMPYGQVDRI 479 Query: 476 CKLIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 CKLIPN+PA+PV QAI + ++ R +D +V RLL+I+ KLEGLYRHASTHAAG+VI Sbjct: 480 CKLIPNNPANPVGLQQAIDGEPLLQDMRKSDETVGRLLDIALKLEGLYRHASTHAAGVVI 539 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPL +LVP+YRD RSD+PVTQFNMK++E AGL+KFDFLGLKTL++L+ ++D + R V Sbjct: 540 GDRPLDELVPLYRDPRSDMPVTQFNMKYVELAGLVKFDFLGLKTLSVLKTAVDHVRHRDV 599 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL +P D ++Y LL + G+FQLESSGMR L M+P+ IEDIIALVSLYRPGP Sbjct: 600 DLDLLDLPMLDEKSYGLLGRAESSGVFQLESSGMRDVLRRMKPNRIEDIIALVSLYRPGP 659 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +DNI Y K G+E +HP ++P+LKET G+++YQEQVMQIAQ+L+GYSL AD+LR Sbjct: 660 MDNIPKYIKVKFGEEAPDYMHPSLEPILKETFGIMVYQEQVMQIAQVLAGYSLGGADLLR 719 Query: 715 RAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RAMGKKIKEEM+K++ +FI+GA + G+ + + IF+ + KFA YGFNKSHAAAYA+++ Sbjct: 720 RAMGKKIKEEMEKERAKFIAGAKEKMGVDEEHSGLIFDQVNKFAGYGFNKSHAAAYALVA 779 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 YQTA++K ++PVEF+AA+MT ++ N +K+ +F Q+ + ++++PP +N F V Sbjct: 780 YQTAYLKANFPVEFMAATMTYDLGNTDKLNQFKQELDRLRVRLLPPDINRSGERFTVEVM 839 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D + Y+LAAIKGVG ++ E A+ PF + DF RVD+ +N+R++E LV Sbjct: 840 PNGDRAVRYALAAIKGVGLPAMEAVVAERRANGPFRDIFDFARRVDTGAINKRMMEKLVC 899 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D R QL LD I ++AQ + R + ++F + L + + + Sbjct: 900 AGAFDALNAHRHQLFAGLDTIMRFAQSEAQQRESGMASLFGASAALKTPD--LPRIADWD 957 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRG--NNIRLAAMVVSK 1004 + +E +GFY S HPLD Y L ++G+ + + A RG ++A +VV++ Sbjct: 958 PLEKLRHEFEAIGFYLSAHPLDGYGKALERLGVVRFADLAARVARGGSTRFKMAGIVVAR 1017 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q++ + G+R +++ S+ + +E F Sbjct: 1018 QERTAKSGNRFAFISMSDSSGVFEVTLF 1045 >gi|307243299|ref|ZP_07525466.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM 17678] gi|306493317|gb|EFM65303.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM 17678] Length = 1200 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 382/1059 (36%), Positives = 597/1059 (56%), Gaps = 50/1059 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YSLL+G L+ ++ ++ + AITD ++F ++F +K +AGI+P Sbjct: 8 DFCHLHVHTEYSLLDGFSRLDKLISRVKDLGMSSCAITDHGSMFGVVDFYKKCKSAGIKP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + +D M ++ T ++LL +GY+ LI++VS Y +D Sbjct: 68 IIGCEVYLAPRD---MESKDSTLDKYSSHLILLAENNQGYKNLIKIVSDAY-VDGFYYKP 123 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R L++ +EG+I L+ +G I +A + A +FG D ++ +Q Sbjct: 124 RTDKDHLRKY-SEGIICLSACLNGEIPKAILARNFDKARSLAQENIDIFGKDNFFLEVQD 182 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H+ D+ + +++L+ ++PLVATN++ ++ ED DVLM + + R + Sbjct: 183 HKLAEDKEVNAGLLKLSKEMDIPLVATNDAHYVYREDARIQDVLMCIQMQKTLDDPSRMK 242 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+K+R EM +F+ PEA+ENT++IA RCS + +P F E Sbjct: 243 FPNDEFYIKSREEMEDLFAFSPEAVENTLKIAERCSVEFDFDSYHIPTFDVPEG----YT 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L++ GL R +G QD R RL++E++VIA M + YFLIV DFI + Sbjct: 299 SLTYLQHICNQGLLERY---GDEEGNVEQDLRDRLNYEIDVIANMGYIEYFLIVWDFINY 355 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +K+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DIDFC +R Sbjct: 356 SKQNNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 415 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP Sbjct: 416 REEVIDYVKRKYGIDHVAQIITFGTMGAKLAIRDVGRVLDVAYNKVDSVAKEIPFALGMT 475 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A + R+ D V +++IS+++EG+ RHASTHAAG+VI RP+ + VP+Y Sbjct: 476 ID-KAFDMNPSLRKLYDGDHEVKEIIDISKEMEGMVRHASTHAAGVVISKRPVYEYVPLY 534 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVKVDLSL 600 ++ D TQF M +E+ GL+K DFLGL+TLT+++ +LD K+D S Sbjct: 535 KN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREKKGYKGKIDFSK 592 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 + ++D + + L++ TLG+FQLES GMR ++ ++P+C EDI+A +SL+RPGP+D+I Sbjct: 593 MEYNDPKVFDLISQANTLGVFQLESGGMRNFMKQLKPNCFEDIVAGISLFRPGPMDSIPT 652 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y N KN +++ +H + P+L T G ++YQEQVMQ+ + L GYSL +D +RRAM KK Sbjct: 653 YINCKNNPDQVTYLHEKLRPILDVTYGCLVYQEQVMQVVRDLGGYSLGRSDSVRRAMSKK 712 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 + M+K+++ FI G +NG+ + +A IF+ + FA Y FNKSHAAA Sbjct: 713 KMDVMEKERQYFIHGKLDENDNIEIAGCVRNGVPEDVANQIFDDMIDFAKYAFNKSHAAA 772 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y V+SY+TA++K +YPVEF+AA MT M N +K+ ++ ++ I ++PP +N F Sbjct: 773 YGVLSYETAYLKCYYPVEFMAALMTSIMGNNDKVVEYMRECSSMGIGVLPPDINKSFSKF 832 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I + LAA+K VG +I+ A+ P+ +L D R+DSK N++ +ESL+ Sbjct: 833 SVDGDHIRFGLAAVKNVGANAIDNIVAEREANGPYKNLTDLVKRIDSKFANKKTIESLIK 892 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKF 943 GA D G +R L+ + +++ +K ++F +E Sbjct: 893 CGAFDSTGDNRASLMFAFEDVLDSISRDKKRNVEGQMSMFDMFADMGKQGELELGKIEGV 952 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNN 994 +R + E+ VLG Y SGHPL Y L + + Sbjct: 953 EEFRDRIRLDMEKEVLGLYVSGHPLSEYSEKLEQRISITNARINKLKEEPEKLLEINEQD 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M++SK+ T+ + ++ + E FP Sbjct: 1013 HIIGGMIISKKLFSTKNNEMMAFINIEDLYGSMEVVVFP 1051 >gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199] Length = 1162 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 509/1049 (48%), Positives = 686/1049 (65%), Gaps = 27/1049 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F+HL+VHS YSL EGA+ ++ ++ PA+++TD+ NLF ALEFS A Sbjct: 1 MSHA-DFIHLRVHSVYSLAEGAIHAKQLVKLAKQNRMPAVSMTDSGNLFGALEFSVTAAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLL 122 G+QPI+G QL + VP ++LLV + GY+ L+ +VSR Y+ Sbjct: 60 EGVQPIVGVQLAVRRPAEPDRRGLRVVAGRDVPPDQLLLLVQSEVGYRNLMGIVSRAYME 119 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G++ ++ L L E TEGLI LT G G + R AE L ++LF DRL Sbjct: 120 TSGEEEPQVALDEL-EGHTEGLIALTAGLRGGMGRLLLEGRDSDAESVLQHLQRLFPDRL 178 Query: 183 YVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 YV LQRH D R +++ LAY ++PLVATN F E+ +EA DVL+ +A ST + Sbjct: 179 YVELQRHFLEDENRIEGRLIDLAYARKIPLVATNEVFFADEDMHEAQDVLLCIAGSTTIG 238 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R+TP H K+ EM +F+DLPEA++NTV +ARRC+++ + PILPRF + Sbjct: 239 NPKRRRLTPHHRFKSSQEMRELFADLPEAVDNTVVVARRCAYMPRKLDPILPRFETEGG- 297 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAI-------AKGYHAQDYRQRLDFELNVIARMKFS 354 + E ELR +A AGL RL + + Y RL EL VI +M F Sbjct: 298 ---RSEAEELRAQAEAGLRARLDAHVLSAETPDDKHAEITRPYWDRLAMELGVIEQMGFP 354 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV+DFI+WAK NIPVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+S Sbjct: 355 GYFLIVSDFIKWAKAQNIPVGPGRGSGAGSLVAYSLLITDLDPLRWGLLFERFLNPERVS 414 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQDRRDEVIRYVQ+KYG +RVAQIITFG LQA+AALRDVGR L+MPY QVDR Sbjct: 415 MPDFDIDFCQDRRDEVIRYVQDKYGRDRVAQIITFGKLQARAALRDVGRVLEMPYGQVDR 474 Query: 475 LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +CKL+PN+PA+PV+ QA+ + R R AD +V L+ I+ +LEG+YR++STHAAG+V Sbjct: 475 ICKLVPNNPANPVTLAQAVTTEEELRRQRNADENVANLIRIALQLEGMYRNSSTHAAGVV 534 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 IGDRPLS+LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQ+++D L + G Sbjct: 535 IGDRPLSELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQRAVDLLKEGG 594 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + +DL+ IP +D TY +L + G+FQLESSGMR L ++PD EDIIALV+LYRPG Sbjct: 595 IALDLAKIPLEDEATYTMLARGESTGVFQLESSGMRDVLRRLRPDRFEDIIALVALYRPG 654 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ NI Y K+G E+ +HP ++P+L ET G++IYQEQV Q AQLLSGY+L AD+L Sbjct: 655 PMANIPKYIACKHGDEQPDYMHPKLEPVLNETFGIMIYQEQVQQAAQLLSGYTLGGADLL 714 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKIKEEMD Q+ERF+SGA NG+ + A IF+ +A FA YGFNKSHAAAYA+++ Sbjct: 715 RRAMGKKIKEEMDAQRERFVSGAVDNGVDQGQASGIFDQIAAFAGYGFNKSHAAAYALVA 774 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 YQTA++K ++PVEFLAASMT +M N +K+ F Q+ ++ I ++PP +N DF V Sbjct: 775 YQTAYLKANHPVEFLAASMTYDMGNTDKLNTFRQELQKLRIPLLPPDINRSRRDFAVERM 834 Query: 833 ----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I Y+LAA+K VG ++ A AD+ F SL DF R D +++N+R+LE+LV Sbjct: 835 PDGTMAIRYALAAVKNVGGAAMDALVSARDADRAFKSLGDFADRADPQQVNKRLLENLVK 894 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D +R +L +SL+ + ++ R + N+FA + G ++ L+ Sbjct: 895 AGAFDGLHPNRAELFESLETVVRHVSAAASERGSSQVNLFAVDGGREPTRLRLKDRPDWP 954 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNNIRLAAMVVS 1003 R + E LGFY S HPLD Y L ++ + + E+ A + LA +VV Sbjct: 955 PMERLKEEFDALGFYLSAHPLDAYAESLGRLSVVPSDRAFAETRAKGGSTRLTLAGIVVG 1014 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KQ + ++ G+R +V ++ +E F Sbjct: 1015 KQIRTSKSGNRFAFVQLTDRTGVFEVTLF 1043 >gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280] gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280] Length = 1160 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVMRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 1063 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 1168 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 529/1040 (50%), Positives = 706/1040 (67%), Gaps = 15/1040 (1%) Query: 1 LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 +TQ +P+ FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS Sbjct: 1 MTQKTLAAPAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 K GIQPI+GC+L +D D P IVLL + GY+ L+ L SR Sbjct: 61 DKVAGLGIQPIVGCELAVDFTDQDANARNALPPA----RIVLLATREAGYRNLMRLNSRA 116 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L S + WL++ EGLI LTGG GP+ +AF + +A R +FG Sbjct: 117 FLETPEHCSPHVNWEWLRDE-NEGLIALTGGPEGPVAQAFNADQPALATARCDRLAGIFG 175 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DRLYV LQRH +R E ++ LAY LPLVATN F + +DYEAHD L+ +A Sbjct: 176 DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGR 235 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +V++ DR ++TPDH K R+EM +F+D+PEAL +T+EIA RC+F + PILP F Sbjct: 236 LVAETDREQLTPDHRFKTRAEMAVLFADIPEALSSTMEIAERCAFRPRTRKPILPHFTVA 295 Query: 299 E---CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 D + +E ELR +A GL RLA ++ G QDY RLDFEL+VI RM ++G Sbjct: 296 SDAAAADGKNDEAAELRRQAQEGLAKRLAVHGVSTGMTEQDYSARLDFELDVITRMNYAG 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI+ AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM Sbjct: 356 YFLIVADFIKHAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERISM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L Sbjct: 416 PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KL+P +PA PVS QAI + + + R DP V R +I+Q+LEGL RHASTHAAGIVI Sbjct: 476 TKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QRG+ Sbjct: 536 GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGI 595 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VDL+ +P DD +Y +LT +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP Sbjct: 596 DVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NI Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR Sbjct: 656 MANIPTYCARKHGEEEAEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKI+ EM+KQ+ F++G+ NG+ + A IFELLAKFADYGFNKSHAAAYA++SY Sbjct: 716 RAMGKKIRSEMEKQRAIFVAGSVNNGVPRGQAETIFELLAKFADYGFNKSHAAAYALVSY 775 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA+MK H+PVEFLAASMTL+M N +K+ +F +A++ I++ PS+N F+V + Sbjct: 776 QTAYMKAHFPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSINRSGATFEVKEGV 835 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y+LAA+KGVG I+EA F SL DF +RV + +N+RV+ESL AGA + Sbjct: 836 ICYALAALKGVGAHAVEQIVEARKAGMFTSLADFAARVPPRAINKRVIESLAAAGAFEAL 895 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R ++ + I Q + ++F + I L + + R Sbjct: 896 EPNRARVFAGAEAILAACQRSHEATMIGQNDMFGGLAD--APDIMLPRAEPWLPADRLRR 953 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012 E +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G Sbjct: 954 EYEAVGFFLSGHPLDDYATALKRLRVQSWVEFSRAVKSGATAGKVAATVVSRMERRTKTG 1013 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +++G + S+P+ +EA F Sbjct: 1014 NKMGIIGLSDPSGHFEAVLF 1033 >gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio parahaemolyticus 16] gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio parahaemolyticus 16] Length = 1159 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 423/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFAM----------QSAAFGDELTKLTVLAADNTGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ +EGLI+L+GG SG I +A + + A++ ++ F DR Y+ Sbjct: 110 VQHQPVIDKEWLVEL-SEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++ A ELP+VATN+ +FL E ++AH++ +A+ + Sbjct: 169 ELTRTGRADEESYLHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL VI M F GYFLI Sbjct: 284 EGMEETEFLVMKSEEGLEERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVAIESIPLDDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+E+ D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDEDGAIVYGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R ++ SLD+ K A + ++F + + K + Sbjct: 883 IYAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVENKYTKVA 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ ++ +V++ Sbjct: 943 PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326] gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326] Length = 1159 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 420/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++HS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 CGIKPIIGADFAM----------QSVEFGDELTKLTVLAADNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ EGLI+L+GG SG I +A + +VA + ++ F DR Y+ Sbjct: 110 VQHQPVIDKEWLTEL-AEGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++ + ELP+VATN+ + L + ++AH++ +A+ + Sbjct: 169 ELTRTGRADEESYLHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y RL EL VI M F GYFLI Sbjct: 284 EGMEETEFLVKKSEEGLEERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVAIESIPLDDQASFSLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVNEDGEIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + K Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627] gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLIKRAKEGLEERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +VV+ Sbjct: 943 PWPDQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 619/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHSVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL N K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGNALKAAGQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026] gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026] gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 430/1047 (41%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA + LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016] gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6] gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016] gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6] Length = 1159 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 421/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++HS +S+++G + ++ ++AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 NGIKPIIGADFKM----------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ +EGLI+L+G +G I +A + ++ E + +++ F DR YV Sbjct: 110 VQHQPVIDKEWLIEL-SEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYV 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA ++LP+VATN +F+ +E ++AH++ +A+ + Sbjct: 169 ELIRTGRSDEETYLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLWE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMAETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ +L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDPASFRILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R L+ SLD+ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAALMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVE 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ LA +V++ Sbjct: 943 PWPEKVWLEGERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034] gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466] gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus K5030] gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466] gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034] gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio parahaemolyticus K5030] Length = 1159 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++HS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + +L + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+G +G I +A + ++ E + +K+ F DR Y+ Sbjct: 110 VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + LA H+LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|42528286|ref|NP_973384.1| DNA polymerase III subunit alpha [Treponema denticola ATCC 35405] gi|41819556|gb|AAS13303.1| DNA polymerase III, alpha subunit [Treponema denticola ATCC 35405] Length = 1149 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 394/1037 (37%), Positives = 581/1037 (56%), Gaps = 28/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS +SLL+GA S+ + K Q A+A+TD N+F A+ F I+P Sbjct: 4 DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + + + ++LL GY+ L+ L S+ Y + Sbjct: 64 IIGCEFYVAPESRFEKKETPG--GKKYYHLILLAKNETGYRNLMVLCSKGYT-EGMYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L + EGLI L+ +G + + AE + ++++FG + ++ LQ Sbjct: 121 RIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + S++ +++A +PLV TN+ ++ ++DY A D+LM + + + +R + Sbjct: 180 HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ EM +F + PEA+ NTV IA C+ + PILP + E + Sbjct: 240 FEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILPIYKIPEDFSSK-- 297 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ +R+ A GL+ R + + RL++EL+++ +M F GYFLIV DFI W Sbjct: 298 -EDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R Sbjct: 350 AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP P Sbjct: 410 RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469 Query: 487 -----VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 A+ +E L EIS LEG R++S HAAGIVIG L+ Sbjct: 470 GIKEVTLKYAVDVVPELKEMAEDS-QYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL++ + D + +R K + Sbjct: 529 YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I + D ET+ +L+ +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+D I Sbjct: 589 GDIDYSDAETFKMLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K KI P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG Sbjct: 649 NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M +KE+FI GA + G S+ A IFE+L FA YGFNKSHAAAY+V+++QTA+ Sbjct: 709 KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K H+P EF+AA++T E+ + +K+ ++ +A + ++I+PP VN F V D I + Sbjct: 769 LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L IKGVG A ++E + + S DF R D N+R LE ++ G D G Sbjct: 829 GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ ++D YA ++N + ++F EK + E+ Sbjct: 889 ERSTLMVNMDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 ++GFY SGHPLD Y+ ++ L M+ +Q +T+KG+ +G Sbjct: 949 ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008 Query: 1017 WVTFSEPAKEYEANFFP 1033 + TF + + FFP Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025 >gi|288870429|ref|ZP_06114074.2| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479] gi|288867209|gb|EFC99507.1| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479] Length = 1171 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 372/1047 (35%), Positives = 561/1047 (53%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++AITD ++ ++F + A GI+P Sbjct: 13 AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 72 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + +VLL +GYQ L+++VS+ + +D Sbjct: 73 IIGCEVYVTAGSRFDRETTNGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VDGFYYKP 129 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+ EG+I L+ +G + R + + L ++++FG+ ++ LQ Sbjct: 130 RVDYEVLETYH-EGIIALSACLAGEVQRYIERGMYEQGKNAALRYQQIFGEGNFFLELQD 188 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++++ + LVATN+ + +D HD+L+ + V+ ++R R Sbjct: 189 HGIPAQHTVNQGLMRMSRETGIKLVATNDIHYTFADDATPHDILLCIQTGKKVTDENRMR 248 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y K EM +F EA++NT +IA RC+ ++ LPR+ E D Sbjct: 249 YEGGQYYCKTEEEMRKLFPYASEAIDNTHDIAERCNVEIEFGVTKLPRYDVPEGYD---- 304 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL + RL++ELNVI M + YFLIV DFI + Sbjct: 305 SWGYLNKLCFEGLAKHYPDDDGTL-------KARLEYELNVIHTMGYVDYFLIVWDFIHY 357 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R Sbjct: 358 ARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERVSMPDIDIDFCFER 417 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG E+V QI+TFG+L AK +RDVGR L MPY++ D + K+IP D Sbjct: 418 RQEVIDYVVRKYGKEQVVQIVTFGTLAAKGVVRDVGRVLDMPYARCDAIAKMIPGDLGMT 477 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ R A DP V L+++S +LEGL RH S HAAG+VI + + VP+ Sbjct: 478 LE-KALKQSPDLRNAYNEDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVPLS 536 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605 + TQF M +E+ GL+K DFLGL+TLT++Q ++ RGV +D+ I +DD Sbjct: 537 KAA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKAVEKNRGVVLDMDTIDYDD 595 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 596 KAVLESIGTGKDDGVFQLESSGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPKYLKGK 655 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N P ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM KK M Sbjct: 656 NDPSSATYDCPQMEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 715 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + A +I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 716 EKERQNFVYGNPEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 775 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP E++AA +T MDNV K+ ++ RQ I I+PP +N F V I Y Sbjct: 776 FLKYYYPQEYMAALLTSVMDNVTKVSEYILSCRQMGISILPPDINEGESGFSVSGGAIRY 835 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK VG + I+ F S+EDF R+ +K++N+R LE+ + +GALD Sbjct: 836 GLSAIKSVGKSVVDLIVTERESSGLFTSIEDFVDRMSNKEVNKRTLENFIKSGALDTLPG 895 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + + +KN +F A E+ +IT Sbjct: 896 TRKQKILVAPELLDQRSKEKKNSMEGQLTLFDIASEEEKTRYQITFPNVGEFPKEELLAF 955 Query: 955 EQRVLGFYFSGHPLDVYKPILR-KMGIKGYE-------ESVATIRGNNIRLAAMVVSKQQ 1006 E+ LG Y SGHPL+ Y+ R + + E G+ + + M+ K Sbjct: 956 EKEALGIYVSGHPLEAYETTWRNNITAVTIDFIVDEETEEARVKDGSYVTIGGMITGKTV 1015 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1016 KTTRNNKLMAFLTLEDLVGSVEVIVFP 1042 >gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052] gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 1191 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 385/1077 (35%), Positives = 601/1077 (55%), Gaps = 67/1077 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+G+ + ++ K +IAITD L+ ++F + A I+PI Sbjct: 6 FCHLHLHTEYSLLDGSGKIGKLMKKAKELGMKSIAITDHGVLYGLVDFYKAAKENDIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + + + +VLLV GY+ L+++VS + + R Sbjct: 66 LGCEVYVVPKSRHIKQPDKEN---STYHLVLLVKNQIGYENLMKIVSVASI-EGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I +L++ +EGLI L+ G + + + A++ LT+K++F Y+ LQ H Sbjct: 122 IDYEYLRK-HSEGLIALSACLGGEVQSYHLKGNYEKAKETALTYKEIFNGDFYIELQNHG 180 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ R + ++L+ +PLVATN+ ++S+ED +HDVLM + + + R R Sbjct: 181 MEEQKRVNEENIKLSNETGIPLVATNDVHYISKEDSRSHDVLMCIQTAKTIDDPHRRRYP 240 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FS +PEALENT++IA CS+ + H LP+F +E D Sbjct: 241 SDQFYLKSADEMWDMFSYVPEALENTIKIANECSYEYKFHESKLPKFPLEEGQDPY---- 296 Query: 309 NELRNKAVAGLEVRLA---------------QGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + LR+ GL R + + +A A++Y RL++EL VI +M + Sbjct: 297 DYLRDTCYKGLIDRYSVFENLRNQNLDYSKIEEVVANYEEAKEYVDRLEYELQVIKQMGY 356 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIV DF++++ ++ IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R+ Sbjct: 357 IDYFLIVWDFVRFSYESGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPERV 416 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+ +RDVGRA+ Y++VD Sbjct: 417 SMPDIDSDFCYERRQEVIDYVVEKYGASNVSQIITFGTMAARLCIRDVGRAMNYSYAEVD 476 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 R+ K+IP + +A+ + + A D V L+++S+ LEGL RH+STHAAG+V Sbjct: 477 RIAKMIPTMLGITIE-KALDLNPELKLAYDTDERVKALIDVSKDLEGLPRHSSTHAAGVV 535 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 I +PL + VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++ + + R Sbjct: 536 IASKPLVEYVPLQKN--DEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMNDAVKMIKENR 593 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 GV VDL I F+D E Y+++ T G+FQLES GM ++ ++PD EDIIA +SLYRP Sbjct: 594 GVDVDLDKIDFEDEEVYNMIGEGNTAGVFQLESPGMTSFMKELKPDSFEDIIAGISLYRP 653 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ I Y K EK+ + ++P+L T G ++YQEQVMQ + L+GYS+ +D+ Sbjct: 654 GPMAEIPRYIEGKKNSEKVTYLTKELEPILGVTYGCLVYQEQVMQAVRDLAGYSMGRSDM 713 Query: 713 LRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGF 761 +RRAM KK + M+++++ FI G +NGIS+ IA IF+ + FA Y F Sbjct: 714 VRRAMSKKKHKVMEEERKNFIHGIVENDEVIVPGCVRNGISEEIANKIFDSMMDFASYAF 773 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSHAAAYAV+ YQTA++ +YPVE +AA + M EK+ + A + IQ++PP++ Sbjct: 774 NKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSIMGISEKVAYYIGIAEELGIQVLPPNI 833 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 N F V +N+I + LAAIK VGT I++A + F+SL DF +++D +N+R Sbjct: 834 NESFSKFTVKENKIRFGLAAIKNVGTNVVASIVKAREEKGKFESLVDFINKMDPSSINKR 893 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +E L+ AGALD F R ++L + + ++ + ++FA E+ + ++ Sbjct: 894 AVECLIKAGALDDFDVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFASEE-LKNPEVNY 952 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-------------- 986 E+ + G Y +GHPLD Y L+ + Sbjct: 953 PNIKEFTKRNLLAMEKEMTGLYITGHPLDDYAQSLKMQTTNEISKIFLVQETLDDSLESD 1012 Query: 987 ----------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A + + L ++ S QK TR S + ++ + E FP Sbjct: 1013 MGEINMFNRQDALQDNDRVILGGILASVNQKVTRNNSIMAFLKLEDLTGTIEVIVFP 1069 >gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] Length = 1166 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 379/1045 (36%), Positives = 575/1045 (55%), Gaps = 27/1045 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +HS YSLL+G + + K A A+ +TD N+F A+EF ++ G++P Sbjct: 4 DFVHLHLHSHYSLLDGMIKPKELAKKAAEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG + K ++L G++ L++L S Y + Sbjct: 64 LIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT-EGFYYK 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ EGLI T G + + A+K K +FGD LY +Q Sbjct: 123 PRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYGKRLKDIFGDDLYFEIQI 181 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---VSQKD 244 + ++ +++LA + +V TN+S +L+ ED+ AHDV+ A+ + + Sbjct: 182 NGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSEG 241 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + EM F E L+NT+EIA +C+ + K Sbjct: 242 KAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGY-LFPKFETPEG 300 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 A GLE RL ++YR+RLD+E+NVI +M F+ YFLIV DFI Sbjct: 301 MTPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLIVQDFI 360 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +AKKN IPVGPGRGS GS+ AY L IT++DPLR LLFERFLNPDR+SMPD D+DFC Sbjct: 361 NYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGLLFERFLNPDRISMPDIDVDFCM 420 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR++VI YV+ KYG + VAQIITF +++K +RDV R L PY + DR+ K+I P Sbjct: 421 ERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADRIAKMILPGPT 480 Query: 485 HPVS---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + + F++ D ++ LL++++KLEG RH HAAGIVI PL + Sbjct: 481 QGSTLTIDENLEAHPDFKKLYETDENIRELLDLARKLEGSARHTGIHAAGIVIAPGPLDE 540 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R V VD + Sbjct: 541 YVPVYRD-KDGNRATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGVDVDYNS 599 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +PFDD + LL + T G+FQLES GM+ L ++P +++IIA+++L+RPGP+ + +V Sbjct: 600 LPFDDQNVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPLMSGMV 659 Query: 661 --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG++++EAD LR+A+G Sbjct: 660 DEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTLRKAIG 719 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M K K+RFI GA + G SK +++ + KFA Y FNKSH+ AYA ++Y TAW Sbjct: 720 KKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAW 779 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837 +KT+YP EF A ++ E ++ + + D FNI+++PP VN +F + + +I + Sbjct: 780 VKTYYPEEFFAVKLSTENNDSKFLNLLL-DMENFNIKLLPPDVNKSMPEFAIEEKSKIRF 838 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+ IKG+G A+ I+E + PF + DFC R D+K N++VLESL+ AGA D G Sbjct: 839 GLSRIKGIGEEVAKSIVEEREKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFDFEGI 898 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENE 955 R LL++++ Q +++ ++FA + K E + + E Sbjct: 899 DRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKEKLRLE 958 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKK 1008 + VLGFY SGHPL+ YK L+ + E + + G+ +++A ++ + KK Sbjct: 959 KEVLGFYLSGHPLNAYKKELKNK-VLKISEIIESAFGDKTFQSGSKVKIAGVIDEIKYKK 1017 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ G+ + S+ + + FP Sbjct: 1018 TKSGATMVVFQISDETGQMDVRAFP 1042 >gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706] Length = 1159 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 420/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+AA PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + LL GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A ++LP+VATN +F++EE +EAH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ +EM +F+D+PEAL N+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL EL+VI +M F GYFL+ Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLV 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + +E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L+ G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V DN I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGALD G R ++ S+D+ + A + ++F + + + Sbjct: 883 ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 VR E E+ LG Y +GHP+D Y L K E+ T R ++ A +V++ Sbjct: 943 EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E + Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRLEVMLY 1030 >gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1160 Score = 792 bits (2045), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412] gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302] gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412] gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302] Length = 1162 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 430/1047 (41%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 4 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 64 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 114 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA + LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 173 IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 233 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 288 MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 348 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 408 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 468 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 527 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 587 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 647 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 707 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 767 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 827 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 887 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 947 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4] gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4] Length = 1159 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 419/1048 (39%), Positives = 609/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS YS+++G + ++ K+A PA+A+TD NL +++ A Sbjct: 1 MSD-PKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + LL + EGY+ L L+S+ YL Sbjct: 60 NGVKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+G +G I +A + VAE + +++ F DR Y+ Sbjct: 110 VQHQPVIDKTWLAEL-SEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+ A +LP+VATN +F+ EE ++AH++ +A+ + Sbjct: 169 ELVRTGRPDEETYLHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P+ YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE + L K+ GLE RL + +Y RL EL+VI +M F GYFLI Sbjct: 284 EGMEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNSIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + IP D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PIQIESIPLVDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN EK+ + + + ++PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDQSGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R L+ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSRIG +T + + E F Sbjct: 1003 RVMTTKRGSRIGIMTLDDRSGRMEVMLF 1030 >gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1160 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11] gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11] Length = 1159 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 415/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S+++G + ++ + PA+A+TD NL +++ A Sbjct: 1 MSE-PKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + ++ +L EGY+ L L+S Y Sbjct: 60 AGIKPIIGADFKV----------QSQEFGNELFNLTVLAKDNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + WL EGLI+L+GG SG + +A + ++ + + ++ F + Y+ Sbjct: 110 VQHTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ +D++AH++ +A+ + Sbjct: 169 ELTRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RLA + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 IDFCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+DP + +A + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PSDPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E++ H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP VN+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG +I+EA F L DFC+R+D+KK N+RV+E L Sbjct: 823 FNVDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + AGALD G R L+ SLD+ K A + + ++F + + Sbjct: 883 IRAGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L + ++ T R + +A +V++ Sbjct: 943 KWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 1160 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1160 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 423/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ + + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ FL +D++AH++ +A+ + R Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073] gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972] gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073] gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972] gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972] gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863] gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v] Length = 1160 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +VV+ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|325475361|gb|EGC78546.1| DNA polymerase III [Treponema denticola F0402] Length = 1149 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 395/1037 (38%), Positives = 581/1037 (56%), Gaps = 28/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS +SLL+GA S+ + K Q A+A+TD N+F A+ F I+P Sbjct: 4 DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + + + ++LL GY+ L+ L S+ Y + Sbjct: 64 IIGCEFYVAPESRFEKKET--PGGKKYYHLILLAKNETGYRNLMVLCSKGYT-EGMYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L + EGLI L+ +G + + AE + ++++FG + ++ LQ Sbjct: 121 RIDDELLTQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + S++ +++A +PLV TN+ ++ ++DY A D+LM + + + +R + Sbjct: 180 HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ EM +F + PE + NTV IA C+ + PILP + E + Sbjct: 240 FEGSEFYFKSGEEMAQLFPEYPETILNTVRIAEMCNLEIPQPGPILPIYKIPEDFSSK-- 297 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ +R+ A GL+ R + + RL++EL+++ +M F GYFLIV DFI W Sbjct: 298 -EDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R Sbjct: 350 AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP P Sbjct: 410 RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469 Query: 487 -----VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 A+ +E P L EIS LEG R++S HAAGIVIG L+ Sbjct: 470 GIKEVTLKYAVDVVPELKEMAED-PQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL++ + D + +R K + Sbjct: 529 YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I + D ET+ +L+ +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+D I Sbjct: 589 GDIDYSDAETFKMLSEGLAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + K KI P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG Sbjct: 649 NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M +KE+FI GA + G S+ A IFE+L FA YGFNKSHAAAY+V+++QTA+ Sbjct: 709 KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837 +K H+P EF+AA++T E+ + +K+ ++ +A + ++I+PP VN F V D I + Sbjct: 769 LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L IKGVG A ++E + + S DF R D N+R LE ++ G D G Sbjct: 829 GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ +LD YA ++N + ++F EK + E+ Sbjct: 889 ERSTLMVNLDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 ++GFY SGHPLD Y+ ++ L M+ +Q +T+KG+ +G Sbjct: 949 ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008 Query: 1017 WVTFSEPAKEYEANFFP 1033 + TF + + FFP Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025 >gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1160 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 1093 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 422/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ + + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ FL +D++AH++ +A+ + R Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 1159 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 620/1048 (59%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS +S+++G + I+ K + Q PA+AITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L + EGY+ L L+S Y Sbjct: 60 AGIKPIIGADFKV----------QSEELGDELFDLTILAANNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + +GLI+L+GG +G + +A + + E+ + ++ F D Y+ Sbjct: 110 VQHQPVIDKEWLIK-HKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +LP+VATN+ LS + +EAH++ +A+ ++ Sbjct: 169 ELVRTGRPDEEAYLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 NRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GELSTEDFLVVKSKEGLEERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + +++ +D V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFDAEPQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGHHPVTQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGED 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V+++ IP D +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVNIAAIPMADQKSFTMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F +GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + A+KGVG +I+ A A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDDQGAIVYGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA+D G +R ++ SLD+ + A + ++F + + Sbjct: 883 IKSGAMDRLGPNRASMMASLDDAIRAASQHHQAEAFGQTDMFGVLTEAPEEVEHKYANIP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 943 EWPDKVWLEGERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLLTLDDRSGRMEVMLF 1030 >gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114] gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114] Length = 1159 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S+++G + ++ K+ PA+A+TD NL +++ A Sbjct: 1 MSE-PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + ++ +L EGY+ L L+S Y Sbjct: 60 AGVKPIIGADFKV----------QSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + WL EGLI+L+GG SG + +A + ++ + + ++ F + Y+ Sbjct: 110 VQHTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ +D++AH++ +A+ + Sbjct: 169 ELTRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RLA + +Y RL EL+VI +M F GYFLI Sbjct: 284 EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 IDFCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+DP + +A + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PSDPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + I +D +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESISLEDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E++ H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP VN+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG +I+EA F L DFC+R+D+KK N+RV+E L Sbjct: 823 FNVDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + AGALD G R L+ SLD+ K A + + ++F + + Sbjct: 883 IRAGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L + ++ T R + +A +V++ Sbjct: 943 KWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|57233855|ref|YP_182167.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195] gi|57224303|gb|AAW39360.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195] Length = 1170 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 375/1038 (36%), Positives = 575/1038 (55%), Gaps = 37/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K +VLL +GY LI+L SR ++ + R Sbjct: 62 LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D++ K+ EM + D+P+A+ENT +IA C+ L LP K + Sbjct: 235 GDYFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAG----KTPD 290 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + GL +Q+ RL +EL+VI +F+ YFL+ D I++ K Sbjct: 291 EYLADLCYEGLPKFYPD-------ASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF DRR+ Sbjct: 344 EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP + Sbjct: 403 EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + + ++ D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ R Sbjct: 463 -KAMEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521 Query: 549 VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604 + + +TQ+ M+ I K GL+K DFLGL L +L K+ + + +D IP D Sbjct: 522 SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 582 DVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 642 KHGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQK FI GA KNG + IA +F L+ FA Y FNK+HA +YA+I+YQTA++K +YP Sbjct: 702 MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839 VE++ A + D EK+ +AR I+++PP +N V+F++ N +I + L Sbjct: 762 VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+K VG I+ + + S+ED C R + LN+RV+ESLV AGALD G R Sbjct: 822 AAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 LL +L NI AQ +K + + ++F + + + + V + + + E Sbjct: 881 GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++G + S HP Y +++ + + + +A MV S + TR+G Sbjct: 940 KELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSATREGKPF 999 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + E +P Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017 >gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2] gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2] Length = 1184 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 400/1046 (38%), Positives = 604/1046 (57%), Gaps = 24/1046 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ F HL VH+ +SLL+GA+ L+ +L + +AITD +F F++KA Sbjct: 1 MMDTPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKAR 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GIQPI+GC++ + + T + +VLL EGY L +LVS + Sbjct: 61 KVGIQPILGCEVYVAPRSIRNKTAEDNKGLN---HLVLLAKDREGYGNLCKLVSIAQF-E 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 RI L + ++GLI L+ G I + N +A + FG D Sbjct: 117 GFYYKPRIDRELLTKY-SKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNF 175 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q++ + +++ +P+VATN+ +LS + AH+ L+ + ++ Sbjct: 176 FLEIQKNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLN 235 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---- 296 +R + + + Y K+ EM++ F P A+ENT+ IA+RC+ PR+ Sbjct: 236 DANRFKFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQG 295 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355 EK +D + + +A G E RL + YR+RL +E+ VI M F G Sbjct: 296 EKSGEDCVQTAGEIFKRQAQEGFERRLKMLKRKNPNLDEALYRERLAYEIGVILDMGFPG 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI++++++NIPVGPGRGS AGS+ AYA+ IT +DP+ L+FERFLNP R+SM Sbjct: 356 YFLIVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 PD D+DFC + RDEV +YV ++Y G + V+QIITFG L+AKA +RDVGRAL +P +VD Sbjct: 416 PDIDVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDV 475 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L KLIP QA+ D R E DP L++I+ LEGL R ASTHA G+VI Sbjct: 476 LAKLIP--DNAKNLGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVI 533 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRG 593 D+PL + +P Y+ + VTQF+M ++EK GL+KFDFLGL+ LT+++ +LD Q Sbjct: 534 SDKPLVEYLPTYKG-KEGEVVTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQSK 592 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 DL I DD TY LL T G+FQLESSGM++ + +QP C DI+ALV+LYRPG Sbjct: 593 EVPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPG 652 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D+ + Y RK+G+E +V + P ++P+LKET GVI+YQEQVM+IA +L+ YS+++AD Sbjct: 653 PLDSGMADSYVERKHGREDVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMADAD 712 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 LR+AMGKKI M++ + F+ GA +N + A +F+L+ KF YGFNKSH+AAYA+ Sbjct: 713 GLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAYAL 772 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 I +QTA++K HYP+E++AA MT +M N++ + KF + R I ++PP VN F V Sbjct: 773 ICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFTVA 832 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I + LAA+KG+G+ I+E + PF S+ DFC RV+ K+N+RVLE+L+ GA Sbjct: 833 PAAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIKCGA 892 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVEN 947 D G R Q++ L++ + +++ + + ++FA +G + ++ + Sbjct: 893 FDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEGGEALPLSVPSMPDIPELD 952 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + E+ LGFY +GHPLD Y+ +++K E V T G ++R+ + + Sbjct: 953 DNDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNSETLVETPEGQSVRMGGALRPLKIL 1012 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 KT+KG + + + E FP Sbjct: 1013 KTKKGDMMAFAALEDKKGSVEVVIFP 1038 >gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1160 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 423/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ + + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ L Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ FL +D++AH++ +A+ + R Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301] gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T] gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301] gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T] gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 428/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG I A +VV+ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 420/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ +GLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KDGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+K+LNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970] gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970] Length = 1171 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 409/1049 (38%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGLI+L+GG G + + + ++ L +++ F Y+ Sbjct: 121 GAAGPIIDRDWLIR-HKEGLILLSGGRMGDVGKFILRGNQIQVDQCLEFYQEHFPGSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLI Sbjct: 295 GKMSTEDFLVEKSKQGLEERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G + ++ T RG +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse] gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse] Length = 1162 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 583/1033 (56%), Positives = 745/1033 (72%), Gaps = 8/1033 (0%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P F+HL+VHS+YSLLEGAL + I+ +D PA+AITDTNNLF ALEFSQ + Sbjct: 13 NSPPRFIHLRVHSAYSLLEGALKIPQIIQHAISDAMPAVAITDTNNLFGALEFSQHCFSH 72 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPIIGCQL ID D K P SIVLL ++ GY L+ LVSR YL Sbjct: 73 GIQPIIGCQLTIDFGDGNDNPRFVKWRHPFDFCSIVLLAASKIGYAHLVRLVSRAYLDKC 132 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL +EG+I LTGG GPI+ + A +RL+ KK+F DRLYV Sbjct: 133 DTDPPHIKADWLLS-QSEGIIALTGGRGGPINFCLAEDKKARAVERLIYLKKVFNDRLYV 191 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH +DR E+ +++LAY H +PLVATN + FL+ + YEAHD LMAVA +VS D Sbjct: 192 ELQRHGSFDRKVETALIELAYAHGIPLVATNEAFFLNRKGYEAHDALMAVAEGQIVSNPD 251 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302 R RVTPDHYLK + EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ D Sbjct: 252 RKRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILPRFIEQSVDSNF 311 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +EE++EL N+A GL+ RL +A+GY DY++RLD+E++VI RM+FSGYFLIV+D Sbjct: 312 TLEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRMQFSGYFLIVSD 371 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF Sbjct: 372 FIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDF 431 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR+EVI YVQ +YG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P Sbjct: 432 CQERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAA 491 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + V AI D+ +F E + DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+ Sbjct: 492 PGNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSE 551 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+YRD RS++PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS I Sbjct: 552 LVPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSHI 611 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +Y Sbjct: 612 PLNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALYRPGPMENIPIY 671 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI Sbjct: 672 NARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKI 731 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK Sbjct: 732 HEEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKA 791 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 H+ VEFLAASM+ +M N EK+ F ++A + I+++ P V T F+VG N IYYSLAA Sbjct: 792 HHSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEVGKNCIYYSLAA 851 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKGVG HI+ +K F L+DFC R+D + +N+R +ESLV AGA DCF +R L Sbjct: 852 IKGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVL 911 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L SL + A + N + ++F G I L + S + + + E +V+GF Sbjct: 912 LASLGTLHARALRIFDNNFSGQVDMFGIAGGLKEPLI-LSQASPWSPAEKLYREFQVIGF 970 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 YFS HPLD Y+ IL K I+ + ++G RLA VV+KQ +KT+ G ++G + Sbjct: 971 YFSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKTKSGKKMGIIH 1030 Query: 1020 FSEPAKEYEANFF 1032 FS+ + +YE F Sbjct: 1031 FSDTSGQYETILF 1043 >gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1160 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 1175 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 588/1029 (57%), Positives = 753/1029 (73%), Gaps = 8/1029 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+YSLLEGAL + I+ D+ PAIA+TDTNNLF ALEF+QKA GIQPI Sbjct: 29 FVHLRVHSAYSLLEGALQIGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88 Query: 71 IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IGCQ+ + +N + P + +VLL +T GY L+ LVS +YL ++V Sbjct: 89 IGCQVALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSGVYLETPPGEAV 148 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L T+GLI L+GG GPI A + +AE RLLT K LFGDRLYV L R Sbjct: 149 HLTTETLA-GQTDGLICLSGGPRGPIGNALKEDRRDLAETRLLTLKTLFGDRLYVELDRV 207 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GYDR E ++LAY HELPLVATN + F S +DYEAHD L+A+A +VV+ R R++ Sbjct: 208 AGYDRVIEHSTIELAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDIQKE 306 PD++L+++++M +F+DLPEA++NT+EIA RCS+ + +PILPRF + D +K Sbjct: 268 PDNFLRSQADMAKLFADLPEAIDNTIEIALRCSYYPKTRSPILPRFTGGDTTDKDAAEKA 327 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E EL +A GL+ RLA GY + YR+RL+FEL +I +MKF GYFLIVADFI+W Sbjct: 328 EAEELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR Sbjct: 388 AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P Sbjct: 448 REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V AIA++ RF E +P V LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM Sbjct: 508 VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++ + +RG+ +DL+ IP DD Sbjct: 568 YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L+ +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK Sbjct: 628 PDTYSMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 688 HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ERF+SGA + G++K A IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV Sbjct: 748 DKQRERFVSGAVERGVAKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+M N +K+ F QDA + I+++ PSV T F+VG+NRIYYS+AA+KGV Sbjct: 808 EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRAFEVGENRIYYSMAALKGV 867 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+ +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R +L + Sbjct: 868 GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAAMLAGV 927 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + A ++N + +IF G S + L ++ R E +V+GFY S Sbjct: 928 ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987 Query: 966 HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD YK L+KM ++ + E A RG RLA V SKQ++KTR G+++G V FS+ Sbjct: 988 HPLDEYKAALQKMRVQNWAEFSAAVKRGATAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047 Query: 1024 AKEYEANFF 1032 + +YEA F Sbjct: 1048 SGQYEAVLF 1056 >gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638] gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638] Length = 1171 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 411/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + + L +++ F Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RL+ EL VI +M F GYFLI Sbjct: 295 GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 954 PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 SRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1160 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1160 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1160 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGAALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1160 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 424/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATNN FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 1160 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 422/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ + + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R + + E+ + ++ F +R ++ L Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ FL +D++AH++ +A+ + R Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLIV Sbjct: 286 MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946 +GA D G R L+ SL + K A K ++F + + + Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ + Sbjct: 945 PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+RIG T + + E F Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886] gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886] Length = 1159 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 417/1048 (39%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A + Sbjct: 1 MSD-PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q T + I +L + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QTDTFGDDLCQITVLAANNAGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I + WL E+ +GLI+L+GG +G + +A + +A + +++ F D Y+ Sbjct: 110 IQHQPVIDIQWLAEL-KDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYI 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + V+ A LP+VATN FL+ + ++AH++ +A+ + Sbjct: 169 ELIRTGRADEEAYLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +F D+PEAL NTVEIA+RC+ ++++ + Sbjct: 229 RRPKNYSPQQYLRSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 EGMEIGEFLIKKSKEGLEERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMDKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K+ Sbjct: 523 TDFAPLYCDSEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQA 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + I DD ++ LL T +FQLES GM++ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVRIDAIKMDDQASFRLLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN +KI ++ R+ + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG +I++A + F L DFC+R+D+KK+N+RV+E L Sbjct: 823 FNVNEKGEIVYGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G R ++ SLD+ K A + ++F + + K Sbjct: 883 IQSGAMDRLGPHRAAMMASLDDALKSASQHHQAEAFGQTDMFGVLTAAPEEVEHKYTKVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ E++ AT R +A +V++ Sbjct: 943 PWPDKVWLEGERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGILTLDDRSGRMEVMLF 1030 >gi|187935605|ref|YP_001887524.1| DNA polymerase III DnaE [Clostridium botulinum B str. Eklund 17B] gi|187723758|gb|ACD24979.1| DNA polymerase III subunit alpha [Clostridium botulinum B str. Eklund 17B] Length = 1203 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 379/1077 (35%), Positives = 596/1077 (55%), Gaps = 66/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+G+ + I+ K +IAITD L+ ++F + A GI+P Sbjct: 19 DFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKP 78 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + +VLLV GY+ L+++VS + + Sbjct: 79 ILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 134 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +L + +EGLI L+ G + + + A++ + +K++F + Y+ +Q H Sbjct: 135 RVDHEYL-KAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNH 193 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++L+ +PLVATN+ ++ ++ Y++HD+LM + V +R R Sbjct: 194 GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRY 253 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +FS +PEALENTV+I+++C++ + H LP+F + + E Sbjct: 254 PSDQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE----EP 309 Query: 308 ENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARMK 352 N L+N GL R + +K A++ RL++EL +I +M Sbjct: 310 YNYLKNTCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMG 369 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFLIV DFI++A N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R Sbjct: 370 YIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPER 429 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D DFC +RR EVI YV KYG + V+QIITFG++ A+A +RDVGRA+ YS+V Sbjct: 430 VSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEV 489 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D++CK+IP + +A+ + +E D V L+++S+ LEGL RH+STHAAG+ Sbjct: 490 DKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGV 548 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 VI PL Q VP+ ++ ++ VTQF M +E+ GL+K DFLGL+TLT++ ++L + + Sbjct: 549 VIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKEN 606 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 R + +DL I F+D E Y ++ T G+FQLES GM ++ ++PD +EDIIA +SLYR Sbjct: 607 RNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYR 666 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ I Y K EK+ P ++ +L T GV++YQEQVM+I + L+GYS+ +D Sbjct: 667 PGPMAEIPRYIECKRNPEKVKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRSD 726 Query: 712 VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760 ++RRAM KK + M+++++ FI G +NGIS+ A IF+ + FA Y Sbjct: 727 MVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASYA 786 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAAAYAV+ YQTA++ +YPVE +AA + M + EK+ + A + IQ++PP Sbjct: 787 FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPPD 846 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 +N F V I + LAAIK VG +++ + FDSL DF S++D +N+ Sbjct: 847 INESFAKFAVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAINK 906 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ +G D F R +LL + + K + ++FA + + +I Sbjct: 907 RTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFASD-DIYVPEIE 965 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA----- 988 + + E+ + G Y SGHPLD Y L+ I + E + Sbjct: 966 YPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDDTLEI 1025 Query: 989 ------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + L ++ +K TR + + ++ + E FP Sbjct: 1026 QMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVFP 1082 >gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b] gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 424/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + + + +L + GYQ L L+SR Y Sbjct: 60 AGVKPIIGADFNV----------VSELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 110 GIAGPVIDRDWLAEY-QEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+EED++AH++ +A+ + Sbjct: 169 ELTRTGRPDEEGYLHSAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ +EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Q+Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMTTEDFLVVKSREGLEERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDENGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K G++ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARTMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PE+LENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPESLENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1160 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+++GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 1162 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 582/1030 (56%), Positives = 748/1030 (72%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D+ PAIAITDTNNLF ALEFSQ + GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGALKVKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID D + K + S IVL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLAIDFGDENCNSPLTKLHHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTD 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +L EG+I LTGG GPI+ A + + A +RL KK+FGDRLYV LQ Sbjct: 136 LPHIKADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS +R R Sbjct: 195 RHGSYDRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSNPNRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305 VT DHYLK++ EMVS+FSDLPEALEN+VEIA RC + PILP FIE+ D + Sbjct: 255 VTSDHYLKSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E EL ++A AGL++RL +A+GY DY QRL++E++VI RM+FSGYFLIV+DFI+ Sbjct: 315 AEAKELLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 375 WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY VD L KL+P P Sbjct: 435 RREEVIRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGS 494 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + QAI D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 495 NIELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP + Sbjct: 555 MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN R Sbjct: 615 DEATYAMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +E Sbjct: 675 KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M +Q+ RF+SGA G+ K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P Sbjct: 735 MQEQRARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KG Sbjct: 795 VEFLAASMTYDMTNTDKLNDFRREALRLGIEVVAPCVQTSHRIFEVGENCIYYSLSAVKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL S Sbjct: 855 VGDMVVDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + N ++ +IF G I L + S + + + E +V+GFYFS Sbjct: 915 LVTLNARALRILDNNSSGQVDIFEMVGGLKEPLI-LSQASPWSVAEKLHYEFQVIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPL Y+ +L K ++ + A+++G RLA VV+KQ +KT+ G ++G + FS+ Sbjct: 974 AHPLSEYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSD 1033 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1034 TSGQYEAVIF 1043 >gi|37523503|ref|NP_926880.1| DNA polymerase III subunit alpha [Gloeobacter violaceus PCC 7421] gi|35214507|dbj|BAC91875.1| DNA polymerase III alpha subunit [Gloeobacter violaceus PCC 7421] Length = 1159 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 384/1049 (36%), Positives = 592/1049 (56%), Gaps = 41/1049 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V+L HS YSLL+GA + +++++ + PAIAITD ++ A+E +K AAG++PI Sbjct: 3 YVNLHTHSDYSLLDGASQVPDLIERAKGLEMPAIAITDHGVMYGAIELIKKCRAAGLKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ-- 127 +G + + D + + + +LL GY+ L++LV+ +L QGK Sbjct: 63 VGTEGYVINGDIRDKSRRYRR-----YHQILLAKNLTGYKNLVKLVTISHLDGVQGKGIF 117 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L + EG+I + G I + + A + +K LFGD Y+ + Sbjct: 118 SRPCMNKEMLVQYH-EGIICTSACLGGEIPQLILAGQFEQARRTTQWYKDLFGDDFYLEI 176 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR VV L + ++ATN+S F S ED +AHD L+ + +V +++R Sbjct: 177 QDHGQREDRVVNVAVVHLGRELGIKVIATNDSHFTSCEDVDAHDALLCIQTGKLVVEENR 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R T +LK+ +M +F D +AL T+EIA + + Sbjct: 237 MRYTGTEFLKSAEQMAGMFRDHLSDEVIAQALTTTLEIAEKVEKYDRELLGDSRLPRFPI 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L G+ R A DYR+RL +EL +I +M F+ YFL+ Sbjct: 297 PHG--HTAESYLEQVTWEGMRERFG------SEIAPDYRERLKYELGIIEQMGFATYFLV 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D+I++A+ + I VGPGRGS AGS+ AYAL IT+IDP+R++LLFERFLNP+R SMPD D Sbjct: 349 VWDYIKYARDHGIAVGPGRGSAAGSLVAYALRITNIDPVRYNLLFERFLNPERKSMPDID 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC +RRDE+IRYV KYG + VAQIITF L +KA L+DV R L + YS+ D+L KLI Sbjct: 409 TDFCIERRDELIRYVTEKYGEQYVAQIITFNRLTSKAVLKDVARVLDISYSEADKLAKLI 468 Query: 480 PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P PV L+ + + F+++ D V + +E++ ++EG + HAAG+VI Sbjct: 469 PVVRGKPVPLKKMISEETPAPEFKQSYEGDERVRKWVELAMRIEGTNKTFGVHAAGVVIS 528 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 PL +LVP+ R+ +TQ+ M+ I GL+K DFLGL+ LT++ ++ + + + RGV Sbjct: 529 SVPLDELVPLQRN-NDGQVITQYYMEDIADLGLLKMDFLGLRNLTMIHRAQELIERYRGV 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++DL +P +D TY LL GIFQLESSGM+ + ++P IEDI ++++LYRPGP Sbjct: 588 RIDLDNLPLEDSGTYALLGKADLEGIFQLESSGMKAVVRDLRPSNIEDISSILALYRPGP 647 Query: 655 IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +D I + NRK+G++KI +HPL++P+LKET GV+ YQEQ+M++AQ L GY+L +AD+ Sbjct: 648 LDAGLIPEFINRKHGRKKIEYLHPLLEPILKETYGVLCYQEQIMKVAQELGGYTLGQADL 707 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK +EEM+K + F+ G++KNG+ +A +FE + FA+Y FNKSH+AAY + Sbjct: 708 LRRAMGKKKREEMEKHRSIFVDGSAKNGVPSRVADELFEQMVVFAEYCFNKSHSAAYGYV 767 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 ++QTA++K HYPVE++AA ++ + +K++K+ I+I PP +N DF + Sbjct: 768 TFQTAYLKAHYPVEYMAALLSSVKGDQDKVQKYIASCMGMGIEIEPPDINRSGFDFTPQE 827 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L A+K VG + +++A + PF +L + C RVD + +N+R LESL+ AGA Sbjct: 828 KSILFGLGAVKNVGEGAIQALLDARDSQGPFKNLANLCDRVDMRVINKRALESLIKAGAF 887 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFS 944 D F +R QL+ ++ + +AQ ++R N+F G + Sbjct: 888 DAFSSNRGQLIADMEKVVDWAQDRARDRALGQFNLFDALSGGGDRNPTGYQSAPSAPPTP 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + + E+ +LGFY S HPL + R + + + + A+V Sbjct: 948 DLPPADKLKFERELLGFYISDHPLKAVRESARLLAPVNLADLADCRAESTVSAIALVREV 1007 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+KG R+ V + EA FP Sbjct: 1008 KNVVTKKGDRMAIVQIEDLTGSTEAVVFP 1036 >gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238] gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238] Length = 1159 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 412/1048 (39%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL+VHS +SL++G + ++ K+A PA+ +TD NL +++ A Sbjct: 1 MSETK-FVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + ++ +L EGY+ L L+S+ YL Sbjct: 60 AGIKPIIGADFKV----------QSTEFGNELFNLTVLAKNNEGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + WL E EGLI+L+G +G + +A + ++ + + +K F D Y+ Sbjct: 110 VQHTPVMDKEWLIE-HKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ +D++AH++ +A+ + Sbjct: 169 ELIRTGRVDEDSYLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL+ EM +F+D+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSSQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RLA + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNLIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL KLI Sbjct: 404 IDFCMDKRDKVIEHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PTDPGMTL-AKAFEAEPQLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 523 TDFSPLYCDADGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKE 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD ++ LL T +FQLES GM+ ++ +QPD EDIIALV+L+RPGP Sbjct: 583 AVRIESIPLDDQASFKLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG +I+EA F L DFCSR+D+KK N+R++E L Sbjct: 823 FNVDEDGAIVYGIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GALD G R L+ S+++ K A + + ++F + + Sbjct: 883 IRSGALDRLGPHRAALMASVEDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYTHVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L + ++ T R + +A +V++ Sbjct: 943 RWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSRIG +T + + E F Sbjct: 1003 RVMTTKRGSRIGLMTLDDRSGRMEVMLF 1030 >gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1] gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1] Length = 1173 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 529/1038 (50%), Positives = 706/1038 (68%), Gaps = 15/1038 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F ALEFS K Sbjct: 1 MSSA-GFVHLHVHSAYSLLKGSIKIGKLGELAKADRQPALALTDTDNMFGALEFSDKMAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI GC+L ID D + + IVLL + EGY+ L+ L SR +L Sbjct: 60 YGIQPIAGCELAIDFGD-MDPNARNAAAVAQPSRIVLLAAREEGYRHLMRLNSRAFLDTP 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q+ I WLQE G +GLI LTGG GPI A + + +A +R LFGDRLY+ Sbjct: 119 THQAPHIKFEWLQE-GVDGLIALTGGPDGPISLAIQHDMAALAGQRCERLASLFGDRLYI 177 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ +AY LPLVATN F + +DYEAHD L+ +A +++ Sbjct: 178 ELQRHGTDRERRVEGGLIDIAYGKGLPLVATNEPYFATADDYEAHDALLCIAGGHLIADT 237 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR ++TPDH K R+EM +F+D+PEAL +TVEIA RCS+ + PILP F Sbjct: 238 DRVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSYRPRTRKPILPFFTVGAGSGA 297 Query: 304 QKEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + L+ +A GL RL +A G +DY++RL FEL+VI RMK++GYFL Sbjct: 298 DAVDAASAEAAELKRQAEEGLARRLKVHGMAPGMTEEDYQKRLAFELDVITRMKYAGYFL 357 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDF Sbjct: 358 IVSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDF 417 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL Sbjct: 418 DIDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKL 477 Query: 479 IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +P +PA PV+ AI + + + R DP V R +I+ +LEGL RHASTHAAGIVIGDR Sbjct: 478 VPQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDR 537 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR V VD Sbjct: 538 PLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVD 597 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ +P DD +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ N Sbjct: 598 LATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMAN 657 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y RK+G+E+ +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAM Sbjct: 658 IPTYCARKHGEEEAEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAM 717 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKI+ EMDKQ+ RF+ GA KNG+SK A IF+LLAKFADYGFNKSHAAAYA++SY TA Sbjct: 718 GKKIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTA 777 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 +MK HYPVEF+AASMTL+++N +K+ +F +A++ I++ PPS+N F+V N I+Y Sbjct: 778 YMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFY 837 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +LAA+KGVG I+EA PF SL DF SRV+ + +N+R++E+L AGA D Sbjct: 838 ALAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVNPRAINKRIIETLAAAGAFDVLDK 897 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R ++ D I Q + T+ ++F + + I L + R E Sbjct: 898 NRARVFAGADAIVAACQRAHEAATSGQNDMFGNAAD--APAIILPNVENWLPAERLRREY 955 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSR 1014 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G++ Sbjct: 956 DAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNK 1015 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G + S+P +EA F Sbjct: 1016 MGIMGLSDPTGHFEAVLF 1033 >gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 1167 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 430/1039 (41%), Positives = 625/1039 (60%), Gaps = 33/1039 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P FVHL VHS YSL +G + + + + A PA+AITD NLF+ ++F A Sbjct: 1 MMRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++P+IG ++ + + S+VLL GY+ L L+SR YL Sbjct: 61 QGVKPLIGSEVWVHDVAEPERPV----------SLVLLCMDKTGYRNLSRLLSRAYLEGS 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +I ++WL E ++GLI L+ G I RA Q AE R + +LF +R Y+ Sbjct: 111 RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRAL-QRHPQQAESRARYYARLFPERFYL 168 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR+ ++ Q V LA +LPLVATNN+ FL D+ A D ++ + Sbjct: 169 EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R TP+H L + EM F+DLPEA +NTVEIARRC+ L + LP + Sbjct: 229 RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP---- 284 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + A GL+ RL + I Y +RL E+ VI +M F GYFLIVAD Sbjct: 285 ANQSVDEYLHDAAQKGLQERLQELRITGDATLP-YHERLLREVGVIQQMGFPGYFLIVAD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ LLFERFLNP+R+SMPDFD+DF Sbjct: 344 FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY VD+L KL+P D Sbjct: 404 CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + R + + V LL+I+ +LEGL RHASTHA G+VI PL+ Sbjct: 464 LGMTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 522 Query: 543 VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 +P++ D VTQ + +EK GL+KFDFLGL+TLT++ ++ + Sbjct: 523 LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ +P DD T+ LL + T +FQLESSGMR + +QPD EDI+ALV+L+RPGP+ Sbjct: 583 DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 642 Query: 657 NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + + RK+GK ++ +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL AD+LR Sbjct: 643 SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 702 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F+ GA KNG++ A IF+L+ KFA+YGFNKSH+AAYA++SY Sbjct: 703 RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP F++A +T +MD+ +K+ + + ++I PPSV ++F+ D+ Sbjct: 763 QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 822 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AIKG+G + I++A F +L D RVD++K+NRR LE+L+ AGA+D Sbjct: 823 HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +G SR L+ S+D + A + ++ + E++F+ ++ L + + Sbjct: 883 WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLR 941 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY SGHP+D + L +G + G+ + +A +VV+++ +T++G Sbjct: 942 QERETLGFYLSGHPMDSLRDDLTALGTIPLGDVA---VGSTVLVAGLVVARRSTRTKRGD 998 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 RI ++T + E F Sbjct: 999 RIYFLTLDDGQGRLEVVVF 1017 >gi|210614801|ref|ZP_03290330.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787] gi|210150570|gb|EEA81579.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787] Length = 1156 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 367/1047 (35%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD +F ++F + A AAGI+P Sbjct: 2 SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + +VLL +GY+ L ++VSR + ++ Sbjct: 62 ILGCEVYVAPGSRFDKS--SGASEDRYYHLVLLAENQKGYENLTKIVSRGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L+E EG+I L+ +G + + + A+ ++K+FG ++ LQ Sbjct: 119 RVDMELLEEFH-EGIIALSACLAGEVQKNLHRGMYEEAKAAAFRYEKIFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+++L+ + LVATN+ + ED + HD+L+ + ++ +DR R Sbjct: 178 HGMQEQANVNQQLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLADEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ +M ++F +A+ENT +IA RC ++ LP++ + Sbjct: 238 YEGGQYYVKSEEQMKALFPYALQAIENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GLE ++ R+RL++ELNVI M + YFLIV DFI++ Sbjct: 294 SWEYLNKLCYEGLEKNYEN-------PKKELRERLEYELNVIKTMGYVDYFLIVWDFIKY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++I VGPGRGS AGS+ +Y L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARDHDIMVGPGRGSAAGSIVSYCLGITNIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RV QI+TFG++ A+ +RDVGR + +PY+ VD + K+IP + Sbjct: 407 RQEVIDYVVRKYGSDRVVQIVTFGTMAARGVIRDVGRVMNLPYAFVDSISKMIPTELNMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ +S R+ D V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 LD-RALTMNSELRDLYENDEQVKNLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 TQF M +E+ GL+K DFLGL+TLT++Q ++ + G +D+ I +DD Sbjct: 526 LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKSTGKTIDIDHIDYDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + T T GIFQLES+GM+ ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KAVLDSIGTGRTDGIFQLESAGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N I P + P+L+ T G I+YQEQVMQI + L+GY+L +D++RRAM KK + M Sbjct: 645 NDVNAITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGDVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGIS+ +A I++ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 QKERQNFVYGNEAEGVPGCIANGISEQVANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT +DN K+ ++ RQ I+I+PP +N F V + I Y Sbjct: 765 YLKYYYPVEFMAALMTSVIDNPGKVAEYIYSCRQMGIEILPPDINKGEGKFSVDNGNIRY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAAIK +G I+ + F +L+DF R+ K++N+R +ES + +GA D Sbjct: 825 GLAAIKSIGKPVIEAIIAEREKNGLFKNLKDFIERLSGKEVNKRTIESFIKSGAFDSLHG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + I K ++F E+ I L Sbjct: 885 TRKQFMVIYVKILDQVNQERKYSMTGQMSLFDIVDEEQKKEFDIQLPNVGEYEKETMLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHP+ Y+ RK + G + ++ +K Sbjct: 945 EKEVLGIYISGHPMQEYEEKWRKNISATTMDFQYDEESGHTKVREGAKEIIGGIITNKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1005 KHTKTNKTMAFLTIEDLVGTVEVVVFP 1031 >gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345] gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345] Length = 1177 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 408/1047 (38%), Positives = 594/1047 (56%), Gaps = 38/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S+ +G + I+ K+A PA+A+TD N+ ++F + Sbjct: 22 MSE-PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHG 80 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + + F SI L GY L L+S YL Sbjct: 81 NGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNTGYSNLTLLISDAYLRGN 129 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + +EGLI+L+G G + RA + + + +K F DR Y+ Sbjct: 130 INDKAVIDHEWLAKY-SEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRYYL 188 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R + LA +LP+VATN +F E ++AH++ +A+ ++ Sbjct: 189 ELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADP 248 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y K+ EM +F D+PEA++NTVEIA+RC+ +++H Sbjct: 249 RRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYF-----LPNFPT 303 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 304 GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLI 363 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 364 VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 423 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 424 VDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 483 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ + LEG+ R+A HA G+VI + Sbjct: 484 PAEPGMTL-AKAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 542 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L Sbjct: 543 TDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNGEE 602 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +V + I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 603 RVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 662 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 663 LQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTL 722 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F +GA +NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 723 GGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSHSA 782 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 783 AYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGLFR 842 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ I Y + A+KGVG I++A + PF L DFC+R+D KKLNRRV+E L+ Sbjct: 843 FTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEKLI 902 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 903 CAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 962 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 963 WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATR 1022 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1023 VMMTKRGSKMGLVTLDDKSARLEVMLF 1049 >gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396] gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396] Length = 1158 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 406/1045 (38%), Positives = 607/1045 (58%), Gaps = 40/1045 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL++H+ +SL++G + + ++ K+A PA+A+TD +N+ +++ + A AG++P Sbjct: 3 DFIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + ++ D+ + L GY+ L EL+SR + Q Sbjct: 63 IVGADVWVENLDDPLAP----------FRLTLFARNETGYRNLTELISRGFTEGQSHGRA 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + W+ EGL+ L+G G + +A ++A +RL + ++F D Y+ LQR Sbjct: 113 IMKKDWIAA-QAEGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRT 171 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D V+LA P+VATN+ FL +D+EAH+ + + + R R Sbjct: 172 GRINDEECVHASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERR 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK EM +FSD+PEA+ NTVEIA+RC+ L++ LP + E I Sbjct: 232 FSEEQYLKTAEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTI---- 287 Query: 308 ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + GLE RLA Q G Q Y RL FEL++I +M F GYFLIV DF Sbjct: 288 DEFFIKVSEEGLEERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV YG V+QIITFG++ AKA +RDV R PYS DRL KLIP + Sbjct: 408 MEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFEV 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ ++ RE D + E+++KLEG+ R+ HA G+VI L+ Sbjct: 468 GMTLAKAYEQEEP-LREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+Y D VTQF+ +E+AGL+KFDFLGL+TLT++ ++D + ++ +D+ Sbjct: 527 PLYCDETGSGLVTQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD T++LL T +FQLES GM++ + + PDC EDIIALV+L+RPGP+ + Sbjct: 587 NFIPLDDAPTFNLLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSG 646 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 647 MVDDFINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQK F+ G+ G+ + +A IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 LLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW+K HYP F+AA +T +M N +K+ ++ R+ ++++ P VN F V Sbjct: 767 VSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTVD 826 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L A+KG+G + I++A + PF L DFC RVD +++N+R LE+LV +G Sbjct: 827 DKHRIVYGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947 A+D G SR +++ S++ + A +N ++F + + E + Sbjct: 887 AMDKLGPSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEWS 946 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R + E+ LG Y +GHP D Y+ +R+ E N+ A +VV+ + Sbjct: 947 DKERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNV--AGLVVAVRTM 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 K+++G IG+ T + + E FF Sbjct: 1005 KSKRGGYIGFATLDDRSGRIEVTFF 1029 >gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894] Length = 1160 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG ++ + I +L + GYQ L L+SR Y Sbjct: 60 VGIKPIIGADFNMQCE----------LLGDDFSHITVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+G EGLI+L+GG G + + ++ +AE+ L +++ F DR Y+ Sbjct: 110 GAAGPWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELVRTGRPDEERYLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL+ EM +FSDLPEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGE-----YFLPKFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + +E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K L Sbjct: 523 TDFAPLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A ++++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|313672076|ref|YP_004050187.1| DNA polymerase iii, alpha subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938832|gb|ADR18024.1| DNA polymerase III, alpha subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 1154 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 403/1040 (38%), Positives = 606/1040 (58%), Gaps = 29/1040 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 KS FVHL +HS YSLL+GA+ +N ++DK+ A+A+TD ++ ++F +KA A Sbjct: 2 KSRDFVHLHLHSQYSLLDGAIQINKMMDKLKKFGSSAVAVTDHGTMYGVVDFYKKAIANN 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIGC++ + D + ++LL +G + L LVS L + Sbjct: 62 IKPIIGCEVYVAPDDR--KNRNYEKGEDKNYHLILLAKNNKGLKNLQYLVSLAQL-EGFY 118 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 RI L + +EGLI L+ +G I R + A K ++ + Y+ Sbjct: 119 YKPRIDKELLAKY-SEGLIGLSACLAGEIPRYVIRGDLKEAVKSAKEYEDILSKGNFYLE 177 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQK 243 LQ + ++ +++ + H++P+VATN+ +L + D+ AH +LM + T + ++ Sbjct: 178 LQENGIPEQRIVNRELISIGKNHDIPIVATNDCHYLEKGDHVAHQILMCIQMQTTISNRD 237 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + Y+K+ EM FS++PEA NT++IA C+ + + LP + + Sbjct: 238 KLEFHSDQLYVKSPEEMWEAFSEIPEACLNTLKIAEECNVTIDLGKLHLPHYKVPKG--- 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ + A GL RLA+ + Y RL+FEL VI ++GY+LIV DF Sbjct: 295 -YTVESYFEHLARTGLHRRLARIPAD---EHKKYIDRLNFELKVIIEKNYAGYYLIVWDF 350 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I ++K+N IPVGPGRGSGAGS+ AYAL ITDIDP++F+LLFERFLNP+R SMPDFDIDFC Sbjct: 351 INYSKENGIPVGPGRGSGAGSLVAYALGITDIDPIKFNLLFERFLNPERKSMPDFDIDFC 410 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RRDEVI+YV +KYG++RVAQI+TFG L A+ +RDVGR L++P VD++ K+IP P Sbjct: 411 KNRRDEVIKYVIDKYGNDRVAQIVTFGQLLARGVIRDVGRVLEIPLKTVDKVAKMIPEAP 470 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + DD + + LL ++KLEGL R HAAGIVI D+PL + V Sbjct: 471 GMTLEKA-LKDDPDLEKNIKQIEKGEELLTNARKLEGLLRQTGMHAAGIVISDKPLIEYV 529 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIP 602 P+ + ++D +TQ+ +E+ GL+KFDFLGLK LT++ ++ + +R ++ IP Sbjct: 530 PLCKG-QNDEVLTQYEKNTLEEIGLVKFDFLGLKNLTVIDDTVKLIRRRYNNNFDINSIP 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVV 660 +D +TY LL+ T G+FQLES+GM+ L+ ++P+ EDIIALV+LYRPGP + Sbjct: 589 LNDKKTYELLSNGETTGVFQLESAGMKNLLKKLRPNKFEDIIALVALYRPGPIGSGMLDD 648 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + RK+G++K+ P ++P+L++T G+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKK Sbjct: 649 FVKRKHGEQKVTYFLPELEPILQDTYGIIVYQEQVMQIAQVIAGYSLGSADLLRRAMGKK 708 Query: 721 IKEEMDKQKERFISG--------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 EEM K KE F+ G A K G IA IF L+ KFA+YGFNKSH+AAYA+I Sbjct: 709 KPEEMQKHKEIFLYGSEELKIEGAKKRGFDLKIAEEIFNLMEKFAEYGFNKSHSAAYALI 768 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTA++K HYPVE+++ ++ E+D EK+ F ++ ++ I+++PP++N DF + + Sbjct: 769 SYQTAYLKAHYPVEYMSQLLSSELDKGEKVVVFIEECKRMGIKVLPPTINKSSKDFIIDE 828 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 N I + L AIK VG + I+ A D F S+ DFCSRVD + +N+RV+ESL+ G D Sbjct: 829 NSIRFGLGAIKNVGFSAIESIVAAREDGEFKSIYDFCSRVDLRTVNKRVVESLIKTGVFD 888 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 FG R LL LD + Q +KNR + G + Sbjct: 889 EFGKKRKVLLNVLDAAIEEGQRKQKNREIGITTV-EELLGISDTEEYYPDLDEFQEHDIL 947 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ +LGFY + HPL Y IL + I E ++ + ++ + + R G Sbjct: 948 KMEKELLGFYLTNHPLSSYSNILSTLTIGS-NELELMEEEKDVVVGGIIKNIKTHLARTG 1006 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 ++ +VT + ++ F Sbjct: 1007 EKMAFVTLEDLEGSFDIVVF 1026 >gi|323702832|ref|ZP_08114491.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323532220|gb|EGB22100.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1189 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 394/1036 (38%), Positives = 598/1036 (57%), Gaps = 44/1036 (4%) Query: 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 ++GA + + A+A+TD +F A+EF + GI+PI+GC++ + + Sbjct: 1 MDGATRIKQAARQARESGMNALALTDHGCMFGAVEFYKTCHQEGIKPILGCEVYVAPRS- 59 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142 MT++ + +VLL EGY+ L++LVS Y + R+ L + Sbjct: 60 --MTDRIPKLDDQLYHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKPRVDKQTLARYH-K 115 Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRY-RESQV 200 GLI L+G +G + + SQ A + + +FG + ++ LQ H ++ ++ Sbjct: 116 GLIALSGCVAGEVAQRILSGQSQQARQAARDYVDIFGPNNYFLELQDHGFQEQKTVNREL 175 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 +++A +LPLVATN+ +L E DVL+ + V+ R + + + YLKN E Sbjct: 176 LRIAGDMQLPLVATNDVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFASQEMYLKNPHE 235 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F ++PEAL NTV IA RC L+ LP F E + LR AG Sbjct: 236 MNLVFGEIPEALTNTVRIAERCHVELEFGKLHLPYFTVPEG----YTPASYLRELCEAGA 291 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 R + ++RLD+EL VI +M + YFLIV DFI++A++ I VGPGRG Sbjct: 292 VKRYGHCSGP-------VKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRG 344 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +Y L IT +DPLR+ LLFERFLNP+R+SMPD D+DF +RR EVI Y+ KYG Sbjct: 345 SAAGSIVSYVLGITSLDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYG 404 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 +RVAQIITFG++ A+AA+RDVGRAL M Y +VDR+ KL+P + + +A+A + Sbjct: 405 TDRVAQIITFGTMAARAAIRDVGRALDMSYGEVDRVAKLVPGELNMTI-AKALASSPELK 463 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 A DP V RL++ + +LEG+ RHASTHAAG+VI PL + +P+++ L TQF Sbjct: 464 AAYDHDPEVKRLVDTAAELEGMPRHASTHAAGVVISRDPLVEYLPLHKAA-DGLVTTQFP 522 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618 M +E+ GL+K D LGL+ LT++ ++++ + Q RG +D++ I DD TY++L + Sbjct: 523 MGTVEELGLLKMDLLGLRNLTVINEAVNLIKQTRGRALDMNAIALDDQTTYNMLARGEGV 582 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHP 676 G+FQLESSGMR L+ ++P EDI+ALV+LYRPGP+ + +V + + K HP Sbjct: 583 GVFQLESSGMRNILKELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHP 642 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG- 735 ++P+LKET GVI+YQEQVM IA++++GY+L +AD LR+AMGKKI E M ++ FI G Sbjct: 643 DLEPILKETYGVILYQEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGT 702 Query: 736 ---------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 A G +A +F+L+ FA YGFNKSH+AAYA++SYQTA++K Sbjct: 703 TVDEKGKPLKSPIPGAVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLK 762 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +Y VE++AA +T DN +K+ + ++ R+ IQ++PP +N +F V + I + LA Sbjct: 763 ANYGVEYMAALLTSVRDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLA 822 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG + I+ A D F S DFCSR+D++ +NRRVLESL+ AGALD FG R Sbjct: 823 AVKNVGLGAVQEIIRAREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFG-HRA 881 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQR 957 QLL+ LD+ + A V+++R ++F + +I L + + E+ Sbjct: 882 QLLKGLDDGLELAARVQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKE 941 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG Y SGHPL + ++ + + E + + G + + + +V+ ++ +RKG + + Sbjct: 942 TLGLYISGHPLAEFNWLMEALEARRIVELLEAMDGQPVLVVSNIVTIKRITSRKGDLMAF 1001 Query: 1018 VTFSEPAKEYEANFFP 1033 T + E FP Sbjct: 1002 ATVEDLTGNCEVVIFP 1017 >gi|303248384|ref|ZP_07334644.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ] gi|302490182|gb|EFL50100.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ] Length = 1160 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 407/1037 (39%), Positives = 597/1037 (57%), Gaps = 26/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ + +++ PA AITD NL AL F A A ++ Sbjct: 2 SDFVHLHCHTEYSLLDGAIRIGDLVKTAKGFGCPAAAITDHGNLHGALMFYDYAKKADLK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + +D K ++P +VLL GY L++LVS+ +L + Sbjct: 62 PIIGCEVYVAKEDRRKKD--ARSPRDAGYHLVLLAKDMTGYHNLLKLVSKGHL-EGFHYK 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + G EGLI L+ G I++ S A + LF DR Y+ +Q Sbjct: 119 PRVDKELLGQYG-EGLIALSACLKGEINQKLLRESRDAAVATAREYAALFPDRFYLEIQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ + +++L+ +LPLVATN+ +L +D EAHD+L+ + + V R R Sbjct: 178 NGIPEQTTVNNFLIELSDDLKLPLVATNDCHYLHADDAEAHDILLCIQTAACVDDVKRMR 237 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + EM F D+P+AL NT EIA R L P + K Sbjct: 238 FTSNDLYYRSPEEMAEAFKDVPQALANTCEIADRIDVKLDFDGYHFPVYKAPPG----KS 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ + + A GL+ RLA+ A + Y +RL+ EL VI +M F GYFLIV DFI W Sbjct: 294 LDDVMSDMAREGLKKRLAKMPEA---DPKQYWERLELELGVITKMGFPGYFLIVQDFINW 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGS AGS+ AY+L IT++DP+ + L FERFLN +R+SMPD D+DFC+ R Sbjct: 351 AKDHDIPVGPGRGSAAGSLVAYSLRITNLDPMPYDLFFERFLNIERVSMPDIDVDFCERR 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV YG + VAQI TFG+++AK +RDVGRAL M + + DR+ KLIP D Sbjct: 411 RHEVIRYVTEHYGADAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPEDLKMT 470 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + DP + L++IS++LEGL RHASTHAAG+V+ D+ +++ VP+Y Sbjct: 471 ID-KALELEPELKTLVRTDPRIAHLIDISRRLEGLARHASTHAAGVVVSDKAMTEYVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 + +++ VTQ++MK +EK+GL+KFDFLGLKT+T++ +L + + D +P D Sbjct: 530 KG-KNNETVTQWDMKRVEKSGLVKFDFLGLKTITVIDDALKIIREMGEEPPDFETLPMTD 588 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 TY L T GIFQ+ES GMR+ L ++P+C ED+IA+++LYRPGP+ + +V + Sbjct: 589 PATYELFARGDTDGIFQVESQGMRKYLRMLKPNCFEDLIAMLALYRPGPLGSGMVELFIR 648 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G + + HPL++ L+ T GVI+YQEQVM+IAQ+L+ YSL D+LRRAMGKK E Sbjct: 649 RKHGLDPVEYPHPLLEETLRSTYGVIVYQEQVMKIAQVLANYSLGGGDLLRRAMGKKNAE 708 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM +Q+ F+ G ++N I A IF+L+ KFA+YGFNKSH+AAYA ISYQTA++K HY Sbjct: 709 EMSRQRGIFVEGCAQNKIDAKKANEIFDLMEKFAEYGFNKSHSAAYAQISYQTAYLKAHY 768 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PV F+AA MT +M+N +K+ ++ R +I++ PP VN F V DN+I Y LAA+K Sbjct: 769 PVAFMAALMTSDMENQDKLLQYIAACRAGDIELCPPDVNAGLPHFSVKDNKILYGLAAVK 828 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 +G I D PF SL D SRV+ +K+ +RV+E L+ GA D FG +R L Sbjct: 829 NIGRDAVLEIAAEREKDGPFSSLLDLTSRVNMRKVTKRVIEYLIKCGACDGFGCTRAGLF 888 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956 LD Q ++ ++ + L + E+ Sbjct: 889 AGLDQAAAVGQRRAAEKSEGRLSLMELVPDKPKPTVGLGLSCPEAELPEWLHEEMMAYEK 948 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGFY + HPL Y+ LR M + + G +++ + V+ ++ T+KG ++ Sbjct: 949 EALGFYLTSHPLLAYERDLRSMRVTTLSQCAGLEPGVEVKVPCICVTTKEIITKKGQKMA 1008 Query: 1017 WVTFSE-PAKEYEANFF 1032 + + E E F Sbjct: 1009 FCKLEDHLGGEAEVVVF 1025 >gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703] gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703] Length = 1160 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K AA PAIAITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L +GYQ L L+SR Y Sbjct: 60 AGIKPIIGADFYL----------QSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E GL++L+GG G I + + + ++ + +++ F R Y+ Sbjct: 110 GAAGPTIEREWLVE-HQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D VV LA LP+VATN+ F+SE+D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE L + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMTTEDYLVLRAREGLEERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K L Sbjct: 523 TDFAPLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K G+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDAGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL + K A+ + ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLPDAMKSAEQHARAEAIGQSDMFGVLTESPEQVEQSYSTVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|319956110|ref|YP_004167373.1| DNA polymerase iii, alpha subunit [Nitratifractor salsuginis DSM 16511] gi|319418514|gb|ADV45624.1| DNA polymerase III, alpha subunit [Nitratifractor salsuginis DSM 16511] Length = 1183 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 393/1060 (37%), Positives = 602/1060 (56%), Gaps = 43/1060 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F HL +H+ YSLL+GA + + K+ A ++A+TD N+F ++F Sbjct: 1 MSEHPRFTHLHLHTEYSLLDGANKIKALAKKVKALGMDSVAMTDHGNMFGTIDFYNTMRK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + + D+L G + L GY+ L+ L S+ YL Sbjct: 61 EGVKPIIGMEAYLHNSDDL-----GDKSTRQRYHLCLYAKNEIGYKNLMYLSSQAYLKG- 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFK 175 RI L+E +EGLI + G ++ + A+K L +K Sbjct: 115 FYYYPRINKKLLRE-HSEGLICSSACLQGEVNWHLNLSDRNKKFGAGGYEEAKKIALEYK 173 Query: 176 KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD Y+ L RH D+ R Q+++L+ + ++ATN++ + + ED EAH+ M + Sbjct: 174 EIFGDDFYLELMRHGIGDQQRIDEQIIRLSLETGIKIIATNDTHYTNPEDAEAHEAFMCI 233 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 A + +R R + + Y+K+ EM +F+D+PEALENT EIA +C+ +++ P P Sbjct: 234 AMNKQYDDPNRLRHSVHEFYVKSPEEMARLFADIPEALENTQEIAEKCNLEIKLGNPTPP 293 Query: 294 RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 F E E + + ++A GLE RL +YR+ Sbjct: 294 NFKFTRERAKLAGLELPEPEEEYSLANDIVLFEHEARKGLEKRLEHVP---EEKHAEYRE 350 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ E+ +I MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ AY+L+ITDIDP+ Sbjct: 351 RLETEIGIINSMKFPGYMLIVWDFVRAAKEMGIPVGPGRGSAAGSLVAYSLSITDIDPIP 410 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV KYG VAQIITFG L AK +R Sbjct: 411 YGLLFERFLNPERVSMPDIDMDFCQSRRQEIIDYVVEKYGRVNVAQIITFGKLLAKGVIR 470 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R + +PY+Q D KLIP++ + A + + +E DP ++ + LE Sbjct: 471 DVARVMGLPYAQADAFAKLIPDELGITLKDA-YAKEPKIKELIERDPKAAQVWRFALALE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+A THAAG+VI + PL + P+++ + TQ++ K++E LIKFDFLGLKTL Sbjct: 530 GLNRNAGTHAAGVVISNEPLWEKTPLFKPTGQETLATQYSGKYVEDVDLIKFDFLGLKTL 589 Query: 580 TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T ++++L + +R ++D + +D + Y + T TLG+FQ+ES+GM+ + ++P Sbjct: 590 TTIEEALQLIEKRHGKRIDFKQVDINDPKVYDYIATGNTLGLFQIESAGMQDLAKKLKPS 649 Query: 639 CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 EDIIA+++LYRPGP+++ + + RK+G+ +I + P ++P+LK T GVI+YQEQVM Sbjct: 650 SFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQEQVM 709 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL AD++RRAMGKKIKEEMDK K +F GA K G + A +F+L+ KF Sbjct: 710 QIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKGQFADGAEKKGFDRAKAEELFDLIVKF 769 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN K+ ++ + I + Sbjct: 770 AGYGFNKSHSAAYAMVTFYTSYLKCYYPTEFMAAQLTLEKDNTTKVVRYVDAVKHMGIDL 829 Query: 817 MPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 +PP VN + F + I + L +KG G R I+E+ + PF L DF SR+ Sbjct: 830 LPPDVNRSDLAFIADEIEGRPTILFGLGGVKGAGDVAIRSILESREEGPFRDLSDFISRI 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D+ K+N++V+E+ + AGALD GY+R +L ++ I + A + + ++F + Sbjct: 890 DTAKVNKKVIEAFIKAGALDGLGYTRKAMLTQIEAIMEAASKATQAKKMAENSLFGAGEE 949 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 ++ L+ + E E+ LGFY SGHPLD Y+ L K+ E G Sbjct: 950 MTHVELELDPMEEFDPLQMLEFEKETLGFYVSGHPLDKYREELAKIDYTLSSEIDELADG 1009 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + S +K ++KG++ G + E F Sbjct: 1010 SQALFIGKIESITEKISKKGNKFGIANVMDLHGNIELMLF 1049 >gi|296184692|ref|ZP_06853103.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] gi|296050474|gb|EFG89897.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7] Length = 1183 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 385/1074 (35%), Positives = 601/1074 (55%), Gaps = 58/1074 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK+ +V L H+ YSLL+ + + ++ K +IAITD ++ ++F ++A Sbjct: 3 EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + N + +VLLV GY+ L+++VS+ ++ Sbjct: 63 GIKPIIGCEVYVAGKSMHIKQNDKEN---ENYHLVLLVKNETGYKNLMKIVSKAS-VEGF 118 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R +L++ +EGLI L+ G I + A++ L +K +F D Y+ Sbjct: 119 YYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYLE 177 Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ ++++++ ++PLVATN+ ++ +EDY+AHDVL+ + VV++++ Sbjct: 178 LQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGKVVNEEN 237 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + + YLK+ EM IFS +PEALENTV+IA +C+F + H LP+F E Sbjct: 238 RMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPLPEHV-- 295 Query: 304 QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348 E LR+ GL R + A+ +RL++EL++I Sbjct: 296 --EPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELSII 353 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI ++ +N I GPGRGS AGS+ AY L IT IDP+++SLLFERFL Sbjct: 354 KQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFERFL 413 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ P Sbjct: 414 NPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMNYP 473 Query: 469 YSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 Y++VDR+ K+IP P +++ + +S EA + L++I++ LEGL RH ST Sbjct: 474 YAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHTST 533 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VI +PL VPM ++ D VTQF M +E+ GL+K DFLGL+TLT+L+ ++ Sbjct: 534 HAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAVS 591 Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + +G+ +DL I +DD Y ++ T+GIFQLES+GM ++ ++PD +EDIIA Sbjct: 592 MVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIAG 651 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +SLYRPGP+ I Y + KN E I + P ++ +L T G ++YQEQVM+I + L+GYS Sbjct: 652 ISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGYS 711 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLA 754 + +D++RRAM KK M++++ FI G KNGIS+ A IF+ + Sbjct: 712 MGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSMM 771 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA+YAV+++QTA+M +YP E++AA + + EK+ + + A + I Sbjct: 772 DFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIGI 831 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 Q++ P++N F V +++I + L+AIK VG I+++ F +L DFC+++D Sbjct: 832 QVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKID 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 +N+RV+ESL+ AGA DCF R +LL + + K + ++F K Sbjct: 892 VSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFK-K 950 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----- 988 KI + E+ + G Y SGHPL+ Y+ L + + Sbjct: 951 IEVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTSAKISDIIGDESLE 1010 Query: 989 ---------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ S +K TR + ++ + E FP Sbjct: 1011 DGTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGVIEIIIFP 1064 >gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4] Length = 1159 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 544/1028 (52%), Positives = 719/1028 (69%), Gaps = 13/1028 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS+ SLLEGAL + +LD +D QPA+ ITDT NLF A EFS KA +GIQPI Sbjct: 20 FVHLRVHSALSLLEGALPIKKLLDLAKSDNQPALGITDTGNLFGAQEFSAKAWGSGIQPI 79 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGCQL I D+++ +G+ P + +V++ GY L+EL SR +L Sbjct: 80 IGCQLAIHFSDDVEPERKGELP---LCHVVVIAMDEVGYGNLMELTSRAFLDTDTGLLPH 136 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L ++G+I+L+GG SGP+ +A + + A +RL K F DR Y+ +QRH Sbjct: 137 VSAEYLAS-HSDGVILLSGGVSGPLGKALLTGNKKAARERLQFLAKAFSDRFYIEIQRHG 195 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +R ES + LAY LP+VATN + F + EDYEAHD L+ ++ V+ + DR R+T Sbjct: 196 MEAERKTESAFLDLAYEFNLPVVATNEAFFPAREDYEAHDALICISEGRVLIEDDRRRLT 255 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+HY K R+EMV +FSDLPEAL++T+EIARRCS+ PILPRF + D + E Sbjct: 256 PEHYFKTRAEMVDLFSDLPEALQSTLEIARRCSYRPLRRDPILPRFAGADADPEEAERAE 315 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ +A GL+ RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WA Sbjct: 316 AEELKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 375 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR Sbjct: 376 KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 435 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV Sbjct: 436 EEVIRYVQEKYGRKQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 495 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + QAI ++ R REA + VDRLL+++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y Sbjct: 496 TLGQAIDEEPRLREAAKEEEIVDRLLKMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 555 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ + +R K+D++ +P DD Sbjct: 556 RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRAEKIDVAGLPIDDK 615 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+ Sbjct: 616 PTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 675 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G++++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 676 GEQEMDCLHPLLEPILSETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 735 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ GA + GI+K A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE Sbjct: 736 IQRARFVDGAVERGINKGQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANFPVE 795 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AASMTL+M N EK+ F Q+AR+ I ++PPS+N V F V D +I Y++ AIKGVG Sbjct: 796 FMAASMTLDMGNTEKLGDFRQEARRMKIDVVPPSINKSQVYFDVADGKILYAMGAIKGVG 855 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 HI+E D PF L DF R+ K LN+R LE+LV AGA D SR ++L+ LD Sbjct: 856 EQAVEHIVEVRGDTPFKRLGDFARRISPKFLNKRTLENLVCAGAFDELEPSRARVLEGLD 915 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + AQ E+N +F G ++ L + + + + E +GFY S H Sbjct: 916 RVMGLAQRTEENAAIGQNELFG---GGGEQELQLPEVHGWTAEEKLQREHNAIGFYLSAH 972 Query: 967 PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD Y +L KM ++ + ++ +N RLA V+S+Q++KT+ G+R+G V S+ Sbjct: 973 PLDEYTNLLEKMRVQQWAPFAEAVKKGASNGRLAGTVISRQERKTKTGNRMGIVRLSDST 1032 Query: 1025 KEYEANFF 1032 ++E F Sbjct: 1033 GQFEGLLF 1040 >gi|94969774|ref|YP_591822.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis Ellin345] gi|94551824|gb|ABF41748.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis Ellin345] Length = 1159 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 394/1044 (37%), Positives = 607/1044 (58%), Gaps = 27/1044 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL +H+ YS+L+GA + ++ ++ QPA+A+TD N++ A+ F A Sbjct: 1 MP--PEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKE 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++ I+GC+L I ++N + +G +++L EGY+ L+++VS L Sbjct: 59 KGVKAILGCELYICQKENHREAPEG----DKYNHLIVLAENEEGYRNLVKIVSEASLHG- 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ ++L E ++GLI L+ G + + A+K TF +FG + Y Sbjct: 114 FYYKPRVSKNFLAE-HSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFY 172 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q + R Q + L P+VATN+S +L E+D A DV++ + + Sbjct: 173 LEIQDQGLEEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHD 232 Query: 243 KDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + + + + + M +F+ L T+EIA RC+ L+ PRF E Sbjct: 233 TNRMKFSTNQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGM 292 Query: 302 DIQKEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 I E+ R A +R Q A + +Y +RL+FE++ I +M+F GYFLIV Sbjct: 293 SIDSYFEDVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIV 352 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A++NNIPVGPGRGS AGS+ AYA+TITD+DPL+ +LLF+RFLNP+R+SMPD D+ Sbjct: 353 WDFIRYARENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDV 412 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR EVI+YV KYG ++VAQIITFG++ AKAA++D GRA+ +PY++VDR+ K++P Sbjct: 413 DFCMNRRGEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVP 472 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + A+ D A ++P V L++ +++LEGL R++ HA+ +VI +PL+ Sbjct: 473 TTINITID-GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLT 531 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 LVP+++ ++D VT ++MK +EK GL+K DFLGL TLT+L +L + Q VK++L Sbjct: 532 DLVPLHK-TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVKIELE 590 Query: 600 LIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656 +PFDD +TY + + T G+FQ ESSGMR L +PD +ED+ AL +LYRPGPI Sbjct: 591 KLPFDDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGG 650 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRK G+ K+ H + +L ET GVI+YQEQVMQIA L+GYSL +AD+LRRA Sbjct: 651 MIDDFINRKWGRAKVDYFHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRA 710 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK +EM+KQ++RF GA G K + V+IF+L+ +FA YGFNKSH+AAYA+++Y T Sbjct: 711 MGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHT 770 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++KTH+P+EF+AA +T + + + K+ + R I++ PP VN F I Sbjct: 771 AYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTPDQGAIR 830 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+AIK +G I+ A F S +FC +VD + LN+RV+ESL+ +GA+D G Sbjct: 831 FGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPLG 890 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKI-TLEKFSVENSSVRF 952 R QL +D + AQ +++ + +F E+ K+ +L + R Sbjct: 891 -RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQRL 949 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKK 1008 NE+ +LGF+ +GHP++ YK L E+ +G + ++ + K Sbjct: 950 ANEKEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKVAK 1009 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 ++KG T + F Sbjct: 1010 SKKGDMYALGTLEDIHGAVSFLCF 1033 >gi|167745888|ref|ZP_02418015.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662] gi|167654403|gb|EDR98532.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662] Length = 1153 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 374/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + ++ +IAITD ++ ++F + A A GI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + + +VLL GY L+++VSR + + Sbjct: 62 ILGCEIYVTPGSRFEK--EARQGSSNYFHLVLLAENDRGYHNLMKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ +EGLI L+ G I + A++ L F++++G ++ LQ Sbjct: 119 RVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQD 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ S +++++ + LVATN+ + ED E HD+L+ + V+ +DR R Sbjct: 178 HGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +YLK+ EM +F +A+ENT +IA RC+ + +P+F E D Sbjct: 238 YEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGD----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR G+ ++ R+RL+FEL I M + YFLIV DFI + Sbjct: 294 STSYLRKLCEEGICR-------RYDDVTEELRERLEFELKTIENMGYVDYFLIVWDFIHY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 AKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+ Sbjct: 407 RQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ ++A D L+++S++LEGL RHAS HAAG+VIG + + VP+ Sbjct: 467 IE-GALKKSPDLKKAYAEDEETKYLIDMSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLA 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 + D TQF M IE+ GL+K DFLGL+TLT++Q ++ + +R D++ I +D Sbjct: 526 KGA-DDAVTTQFTMTTIEELGLLKMDFLGLRTLTVIQDAVHLIEKREGKPFDINQIDTED 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y +++ T G+FQLES GM+ ++ ++P+ +E+IIA +SLYRPGP+D I Y K Sbjct: 585 PKVYEMISQGRTEGVFQLESGGMKAFMKELKPESLEEIIAGISLYRPGPMDFIPRYVKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 K+ I P ++ +LK T G I+YQEQVMQI L+GY+L +D++RRAM KK + M Sbjct: 645 VDKDSIRYDCPQLEKILKPTYGCIVYQEQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVM 704 Query: 726 DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F I G KNGI + A +I++ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 VKERKNFVYGNEKEDIPGCIKNGIDEKTANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 +++ HY EF+AA +T + N K+ ++ R+ I+I+PP +N F V D I Y Sbjct: 765 FLRCHYQKEFMAALLTSVLGNTNKVSEYIYACRKMGIKILPPDINKGEGAFSVDDGCIRY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK +G I+ + SL D R+ SK++N+R +ESL+ +GALD GY Sbjct: 825 GLSAIKSLGKPVIEEILRERSEGGSYKSLRDLIERLSSKEMNKRTVESLIKSGALDELGY 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R Q + +I + Q K+ + +I F E + +I + R Sbjct: 885 TRKQQMFVYASILESIQKERKHEISGQMSILDFMSEDQQKNFEIEYPDVGEFDKEQRLAM 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ IL ++ + A + ++ + Sbjct: 945 EKEVLGIYVSGHPLEDDVEILERLTTASTADFTAEEDTGQPVLRDKQTCIIGGIISDMKV 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1005 KLTRTNQNMAFLTLEDLMGTVEVIVFP 1031 >gi|325289860|ref|YP_004266041.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus glycolicus DSM 8271] gi|324965261|gb|ADY56040.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus glycolicus DSM 8271] Length = 1157 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 372/1039 (35%), Positives = 587/1039 (56%), Gaps = 37/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA +N ++ K PA+AITD ++ ++F + GI+PI Sbjct: 2 FTHLHVHTEYSLLDGAARINKLVKKAGELGMPALAITDHGVMYGVIDFYKACKKQGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + K+T + +VLL EGY+ L+++VS ++ + R Sbjct: 62 IGCEVYVAPG---KLTEKNAGRDDKNYHLVLLAENMEGYRNLVKIVSNAHI-EGFYYKPR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 +L+E ++GLI L+ +G I ++ + A + L + +FG ++ +Q H Sbjct: 118 TDKKFLRE-NSKGLIALSACLAGEISELILEDNLEKARETALEYLDIFGKGNFFLEIQDH 176 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D+ +++++++ +P+VATN+ ++ + D DVL+ + ++ + R Sbjct: 177 GLRDQQKVNTEMLKISRMTGIPIVATNDVHYVEKADSFLQDVLLCIQTGKTLNDQTRMSF 236 Query: 249 TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +++ F + PE LE T EIA RC+ LP + E Sbjct: 237 EGQEFYLKAHSEMNLLFGEHPEVLEITEEIAARCNVDFAFGTNFLPDYQVPEGF----TL 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + R Q + + RL++ELNVI + +SGYFLIVADF ++A Sbjct: 293 DQYLREQCAQIFPQRYPQAG-------EREKGRLEYELNVITKTGYSGYFLIVADFCRYA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N + VGPGRGS A S+ AY L ITDI+PLR LLFERFLNP+R++MPD DIDF + R Sbjct: 346 RENGVTVGPGRGSAAASMVAYLLGITDIEPLRHDLLFERFLNPERITMPDIDIDFDPEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI+YV KYG ++V QIITFG++ AK A+RDVGR L +P S+VD++ K +PN+ + Sbjct: 406 DKVIKYVTQKYGADKVCQIITFGTMGAKGAIRDVGRVLNIPLSKVDKVAKAVPNELGMTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + RLLEISQ LEG+ RHASTHAAG+VI PL+ +P+ R Sbjct: 466 ERA-LTVSPDLIRMVSEEEEIKRLLEISQGLEGMPRHASTHAAGVVIAREPLTNYLPLQR 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 P+TQF MK +E GL+K DFLGL+ LT++ ++L + + +DL+ +P DD Sbjct: 525 TA-EGFPMTQFPMKTVEDIGLLKMDFLGLRNLTIISQTLTRIQETQGKTIDLNKLPLDDL 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L+ + G+FQLES GM+ L+ ++P C EDIIA+++LYRPGP++ I + RK Sbjct: 584 KTYQMLSEGKSSGVFQLESGGMKAILKELKPSCFEDIIAVLALYRPGPMEQIPEFIKRKQ 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K+ +HP ++ +L+ T G+I+YQEQVMQIA+ L GYSL AD+LRRAMGKK ++ MD Sbjct: 644 S-GKLSYLHPKLEKILQATYGIIVYQEQVMQIARDLGGYSLGRADLLRRAMGKKNRDIMD 702 Query: 727 KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ F+ G A + G+ K A IF+L+AKFA+YGFNK HA AYA+ISY Sbjct: 703 EERQNFVHGLQDDHGEVIVPGAIRLGLKKNEAEEIFDLMAKFAEYGFNKGHATAYALISY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K ++P+EF A+ ++ + +K+ + +A+ I I+PP V DF + Sbjct: 763 QTAYLKANFPLEFAASLLSSVIGVSDKVSFYIHEAQNNGITILPPDVQFSYNDFAIEGRA 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I + L A++ VG I+E + PF SL DF SR+DS+ +N+RV+ESL+ AGA Sbjct: 823 IRFGLGAVRNVGAQVVEKIIEERKNGPFRSLYDFISRMDSRMVNKRVMESLIKAGAFQSL 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 SR Q L L+ + AQ +++R + ++F ++ D + + + + Sbjct: 883 C-SRAQALTVLERMLDLAQNRQRDRESGQMSLFDLDEKLEED-FAMPQLDEVSQGDISKL 940 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y + HPL + + + + + + L ++ S +Q T++G Sbjct: 941 EKEYLGLYLTNHPLSSIETQYKDLISSDIATCLEGLEEKKVILCGIITSYRQTITKRGEM 1000 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + E FP Sbjct: 1001 MATFLLEDLSGTIEVLVFP 1019 >gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908] gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908] Length = 1157 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 412/1047 (39%), Positives = 601/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + PSFVHL+VHS +S+ +G + I+ K++ PA+A+TD NL ++F + Sbjct: 1 MSD-PSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+IG + + + ++ +L EGY+ L L+S YL Sbjct: 60 AGIKPLIGSDFWVKVPG----------FDKNLCAVTVLAMNNEGYKNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + +EG+I+L+GG G I +A + E + ++ F DR Y+ Sbjct: 110 IDDRAVIDHEWLAKY-SEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V+LA LP+VATN +F + E +EAH++ +A++ ++ Sbjct: 169 ELLRTGRPDEERYLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + + Y K+ +M +F D+PEA+ENTV+IA+RC+ +++ Sbjct: 229 RRPKKYSAEQYFKSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE RL + Y +RLD EL VI +M F GYFLI Sbjct: 284 GELTIEDFLVAVSEKGLEERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++ Sbjct: 404 IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPIYCDAEGQNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 RVRIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIERKHGREAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI + + + ++PP VN + Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLK 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ Sbjct: 823 FNVDDEGNIVYGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDTLGPHRAAMMATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320] gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320] Length = 1160 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS YS+++G ++ K+A+ PA AITD NL ++F A Sbjct: 1 MAD-PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + ++ + + +L GYQ L L+S Y Sbjct: 60 AGIKPIVGADVYLETE----------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGL++L+GG G + + + + E+ L ++ F D Y+ Sbjct: 110 GAAGPVIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + V LA LP+VATN+ FL +D++AH++ +A+ +S Sbjct: 169 ELIRTGRPDEESYLHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P Y++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPKHYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMSTEDFLIKKSKEGLEERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDPEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD+S I D ++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDISAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G E+I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F +GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F + D C+R ++KKLNRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + Sbjct: 883 IMSGAFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 V E E+ LG Y +GHP+ Y + + ++ V T RG +++A +V++ Sbjct: 943 KWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVFTTKRGNRIGICTLDDRSGRLEIMLF 1031 >gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis ITI-1157] Length = 1166 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 505/1057 (47%), Positives = 688/1057 (65%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L + A+ PA+A+TDTNN+F ALEFS A Sbjct: 1 MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCASMDMPAVAVTDTNNMFCALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ G P P P +VLL + GY+ L++L S +Y +D+ Sbjct: 61 AGIQPIIGCQVDLSY----VTAQPGDKPTPPAP-VVLLAQSETGYENLMKLSSCLY-VDK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L + + GLI LTGG GP+ R AE + +F DRLY+ Sbjct: 115 GGQLPQVTLDEL-QRHSAGLICLTGGPDGPVGRLLQQGQRPAAEALVDRLAAMFPDRLYI 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY LPLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTSDMYEAHDALICIAEGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R R+T HY K+ EM ++F+DLPEA+ENTVEIARRC+F+ Sbjct: 234 YVDQQEGRRRLTAQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYKRD-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVEELRRQANEGLQKRLA--VIPHAVSPEEYQKRLDFELGIIESMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R RE + VDRLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 524 RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRDL 583 Query: 597 DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + + IP DD TY L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGTQLYDPPEGAVNEINAIPLDDPATYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F +GA+ NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAAANGVDAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D ++ Y+L A+K VG +++ DKPF +L DF RVD KK+ Sbjct: 824 PPCVNRSQATFDVVDGQLVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE + AGA D +R ++ +SL+ + +Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMMARAGAFDQLDKNRRRVFESLEQLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI- 995 L K + R E + +GFY SGHPLD Y P L++ + +E G + Sbjct: 943 PRLSKSPDWLPAERLSEEFKAIGFYLSGHPLDDYLPALKRKQVMTLDEVTEKARSGPFVA 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ KG+R + S+P YE F Sbjct: 1003 KMAGVVAGRQERKSAKGNRFAFAQLSDPTGAYEVTLF 1039 >gi|116619157|ref|YP_821313.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus Ellin6076] gi|116222319|gb|ABJ81028.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus Ellin6076] Length = 1151 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 403/1036 (38%), Positives = 601/1036 (58%), Gaps = 26/1036 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSLL+GA ++ ++ + + PA+A+TD NLF A++F A A+GI P Sbjct: 2 SFVHLHCHTDYSLLDGACDIDQLMKIMVEQKMPAVAMTDHGNLFGAVKFYNAAKASGIHP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + ++ +T +VLL +GY+ LI+LVS YL + Sbjct: 62 VIGCEVYVS-----QKGHKERTNTDRYNHLVLLCENQQGYKNLIKLVSTSYL-EGFYYKP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L L + +EGLI ++ G I + A + + +FG ++ +Q Sbjct: 116 RIDLDLLSQ-HSEGLIGMSACLRGHIPETILNDKYDDARRMAHQYGDIFGAKNFFLEIQD 174 Query: 189 HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H R + ++V+L+ PLVATN+S +L ++D AH++LM + + +R R Sbjct: 175 HHLEQDKRLTPELVRLSSETGFPLVATNDSHYLRKDDARAHEILMCIQTGKSFNDPNRMR 234 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + PD YLK R EM+ +F +L +L+ T EIA+RC L+ PRF + Sbjct: 235 WSTPDFYLKTREEMMQLFGELEHSLDRTWEIAQRCHVKLEKVLDPFPRFDIP----TEHT 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHA-----QDYRQRLDFELNVIARMKFSGYFLIVA 361 + A G E R + K ++Y +RLD E+ +I MKFSGYFL+V Sbjct: 291 TDTYFEYVARMGFEKRRGRLEAMKAKGTLKHDLEEYAERLDREIKMIQNMKFSGYFLVVW 350 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK IPVGPGRGS AGS+ +YA+ ITDIDPL++ LLFERFLNP+R+S PD D+D Sbjct: 351 DFIRYAKDQGIPVGPGRGSAAGSLVSYAMEITDIDPLQYGLLFERFLNPERVSFPDVDVD 410 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI+YV KYG E+VAQIITF +L A+AA++DVGR L+MP +V+RL KL+P Sbjct: 411 FCMNRRGEVIQYVTQKYGREQVAQIITFNTLGARAAIKDVGRVLEMPLPEVERLTKLVPA 470 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +AI + F+EA DP D +L+++ +LEGL R+ S HAAG+VI PL Sbjct: 471 TLNISL-QEAIDQEPGFKEAARKDPRCDDVLKVALRLEGLSRNCSVHAAGVVISPLPLQD 529 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 LVP+Y+ R + VTQF+M +EK L+K DFLGL TLTL+Q +L + +R V + Sbjct: 530 LVPLYKTNRDE-IVTQFDMGGLEKLQLLKMDFLGLTTLTLIQDALRLIKKRHGVTIVPED 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658 +P DD TY + T G+FQ ESSGMR L QP +ED+ AL +LYRPGPI + Sbjct: 589 LPLDDKGTYEVFCKGITSGVFQFESSGMRDILRRYQPSRLEDLTALNALYRPGPIQGGMV 648 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK G++ + P + +L+ET GVI+YQEQVMQI+ ++GYSL +AD+LRRAMG Sbjct: 649 DDFIERKWGRKAVQYDLPELQVLLEETYGVIVYQEQVMQISNRIAGYSLGDADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ERF+ GA + G ++ IF+L+ +FA YGFNKSH+AAYA +++ TA+ Sbjct: 709 KKKLEEMVKQRERFVKGALERGFNQKKVEKIFDLMEQFAGYGFNKSHSAAYAYLAFVTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K HYPV+F+AA +T E N K+ K+ + R+ I+I+PP VN F + I + Sbjct: 769 LKAHYPVDFMAALLTSETGNTAKVVKYINECREMGIKILPPDVNHSEWSFTPDGDAIRFG 828 Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + AIK VG + I + A+ F SL +FC +VD +NRR++ESL+ AGA+D + Sbjct: 829 MGAIKNVGQSAVEAIGKTRAEVGKFPSLHEFCEKVDLGAVNRRMIESLIRAGAMDSLEGT 888 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQ 956 R Q +++ + +++R + +F L + + E+ Sbjct: 889 RSQKFAAVEGAMEAGARAQRDRESGQVGLFGEVIAADEPHSAPLPNIPDWSEKEKLAGEK 948 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +LGF+ +GHP+D Y + ++ + + + + ++ +K+ R+G Sbjct: 949 ELLGFWVTGHPMDRYMEKVAELANADTSSLEGLAKNHEVAICGVLTGIARKRNREGKPWC 1008 Query: 1017 WVTFSEPAKEYEANFF 1032 +T + A EA F Sbjct: 1009 AMTLEDRAGSVEALLF 1024 >gi|251771258|gb|EES51839.1| DNA polymerase III, alpha subunit [Leptospirillum ferrodiazotrophum] Length = 1193 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 417/1044 (39%), Positives = 606/1044 (58%), Gaps = 22/1044 (2%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + FVHL +H+ YSLL+GA + +++K A PA+A+TD NLF ALEF ++A Sbjct: 4 PRPGRFVHLHLHTQYSLLDGANKIAPLMEKCARLGMPAVAMTDHGNLFGALEFYREAQKH 63 Query: 66 GIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 G++PI+GC+L + + + GK + LL GYQ L+E+V Sbjct: 64 GVKPILGCELYVTPRSRFDREELLMPSGGPHGGKKINNASFHLTLLAENLTGYQNLLEIV 123 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 SR +L + R L EGLI L+G G + + A F+ Sbjct: 124 SRAHL-EGFYYRPRADFELLYR-HREGLIALSGCLKGQVSYLLTRGERERACATADLFRN 181 Query: 177 LFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG R + LQ + ++ +++ L+ ++P+VATN+ +L ED HD+L+ + Sbjct: 182 IFGPGRYFFELQANGLEEQRVANRELLSLSREMKIPVVATNDCHYLDREDALPHDILLCL 241 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + +R R + YLK+ E++ F ++PEA+ENT+ IA R L + +P Sbjct: 242 QTGKTLDDPNRLRFGAEEFYLKSPDEVIEAFREIPEAVENTLAIAERIDLTLDLKKTYMP 301 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + + +++ GLEVR + + YR RL+ E+ VI M F Sbjct: 302 EY-VPDVGETGRTINELFCDRSREGLEVRFGEKEFD-AERKELYRARLEREIAVILEMGF 359 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 +GYFLIV DFI+ A++ I VGPGRGS AGS+ A++L IT+IDP+ F LLFERFLNP+R+ Sbjct: 360 AGYFLIVWDFIRKAREQGIAVGPGRGSAAGSLVAWSLRITNIDPIAFGLLFERFLNPERV 419 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 S+PD D+DFC +RR EVI YV KYG +RV+ I TFG++ AKA++RDVGR L M YS+VD Sbjct: 420 SLPDIDVDFCMNRRGEVIDYVMKKYGADRVSMIATFGTMGAKASIRDVGRVLGMTYSEVD 479 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 R+ K+IP + + + FRE R DP++DRL+ +S KLEG+ RHAS HAAGIV Sbjct: 480 RVAKMIPTALEMTLEKA-LEQNKEFRELREKDPAIDRLVSLSMKLEGITRHASIHAAGIV 538 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I PLS VP+ R VTQF +EK GL+KFDFLGL TLTL++ ++ + Sbjct: 539 ISQDPLSGHVPLMRGA-GGETVTQFTKDDVEKVGLVKFDFLGLTTLTLIEDAVRRIRVHT 597 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + D+ IP DD TY L TLGIFQLES GM L + P+ ED+IAL++LYRPG Sbjct: 598 PEFDIDRIPLDDPGTYAFLQGGKTLGIFQLESRGMTDLLVKLAPEVFEDLIALLALYRPG 657 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PI++ + + RK +IV HP ++P+L+ET GVI+YQEQVMQIA +L+G+SL +AD Sbjct: 658 PINSGMVDDFIRRKKNPREIVYEHPDLEPILRETYGVIVYQEQVMQIANVLAGFSLGDAD 717 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM+K K FI+GA + +T A +IFEL+A FA YGFNKSH+AAYA+ Sbjct: 718 LLRRAMGKKKPEEMEKMKGLFITGAVERKTDRTKADHIFELMAHFAGYGFNKSHSAAYAL 777 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTA++K HYPVEF AA +T +D+ EKI F AR+ +I+++ P +N +DF V Sbjct: 778 ISYQTAYLKAHYPVEFWAALLTNALDDTEKIGTFLAGARELDIRVLSPDINESLLDFTVL 837 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 R I + L A+K VG I+E A PF S DF R+D K+NRRV+E+L AG Sbjct: 838 PGRTIRFGLGAVKNVGRQAVEAILEIRAAGGPFLSFPDFMKRIDGHKVNRRVVEALAKAG 897 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D G +R + ++D + ++ ++K + +K +F + + + Sbjct: 898 AFDSLGTTRAAAMANIDPLLEWVAGIKKPKKSKMGKLFREFEQDSEPEAPWTAVPEWDEK 957 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFY S HP+ Y I ++ + G+ + + +V + ++ KT Sbjct: 958 TLLKAEREGLGFYLSRHPMTPYMKIAEELECPTLGQLEGQAEGSTVSVFGIVSAIRELKT 1017 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +KG ++ VT + + E FP Sbjct: 1018 KKGDKMAQVTLMDFEQSLEMVLFP 1041 >gi|300814414|ref|ZP_07094685.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511522|gb|EFK38751.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1145 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 369/1051 (35%), Positives = 580/1051 (55%), Gaps = 50/1051 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YSLL+ + + I + A+A+TD N++ A++F + Sbjct: 1 MSN---FIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKK 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIGC++ + + + +VLL +G + L+++VS + +D Sbjct: 58 VGVKPIIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAF-VDG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L L++ ++G+I + +G + R A+K L ++ +FG D + Sbjct: 112 YYYKPRVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDEAKKAALRYRDIFGKDNFF 170 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R ++ +L+ + L +N+ +L +ED +A DVL+ + + Sbjct: 171 LELQDHGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGAKIKD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R + T + YLK+ EM +IFSD +A+ NT IA RC+ + LP F Sbjct: 231 EKRMKFPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG- 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L A GL + + R + E I +M F YFLIV Sbjct: 290 ---YTNESYLEKLAKEGLNK-------RYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVW 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI + KKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DID Sbjct: 340 DFINYVKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDID 399 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+ Sbjct: 400 FCYERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH 459 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ F+E D L++I++++EGL RH STHAAG+VI PL+ Sbjct: 460 ALKMTLD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTD 518 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600 VP+ R+ + TQFNM +E+ GL+K DFLGL+TLT+L+ ++ VK+D S Sbjct: 519 YVPLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSE 576 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +DD + + TLG+FQ ESSGMR L+ ++PD D++A +L+RPGP+ I Sbjct: 577 FTYDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPK 636 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+ K KI IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL AD++RRA+ KK Sbjct: 637 FIESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKK 696 Query: 721 IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 M+++++ FI GA +NG+ + A I++L+ FADY FNKSH+ AY+VI Sbjct: 697 KMAVMEEERKNFIYGNEKDNVCGAIRNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVI 756 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +Y++AW+K +YP EF+AA ++ +++++ + ++ ++ I ++PP+VN +F V Sbjct: 757 AYRSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEG 816 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFA 888 +I + L A+K VG I++A F SL DF +V ++ LN++ LESL+ Sbjct: 817 KKIRFGLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRC 876 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 G LD F +R Q L + + + Q +N +F + + L + Sbjct: 877 GTLDDFNGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSL 932 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAAMVV 1002 + E+ V+G Y SGHPLD Y+P L E + +IR+A ++ Sbjct: 933 RDKLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLK 992 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K+ T+ + + + + E FP Sbjct: 993 NKKTMITKTNKVMAFASLEDLFGTIELIIFP 1023 >gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 1159 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 416/1048 (39%), Positives = 607/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + Q + + + +L + EGY+ L L+S+ YL Sbjct: 60 CGVKPIIGADFAM----------QSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ + GLI+L+G SG I +A + +VA+ + + F DR ++ Sbjct: 110 VQHQPVIDKQWLAEL-SAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++ A +LP+VATN+ + L E +EAH++ +A+ + Sbjct: 169 ELTRTGRADEETYLHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL VI M F GYFLI Sbjct: 284 EGMEETEFLVKKSEEGLEERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N Sbjct: 763 AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + K Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 AWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 1160 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R + + E+ + ++ F DR ++ Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALENTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L KA GLE RLA + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 + FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VSFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP E +AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEIMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG + +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|290968934|ref|ZP_06560469.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str. 28L] gi|290780890|gb|EFD93483.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str. 28L] Length = 1163 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 369/1034 (35%), Positives = 587/1034 (56%), Gaps = 30/1034 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSL +G + ++ A PAIA+TD N++ A+ ++A A GI+PI Sbjct: 4 FVHLHVHTQYSLFDGLCRIPEMVQMAKAMNMPAIAVTDHGNMYGAVHLYKEAKAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129 +GC++ + + + + + ++LL +GY L+++VS+ Y+ Sbjct: 64 LGCEIYMTRGSRFEKKTRER-----LCHLILLAKNTQGYHNLVKIVSKGYVDGVNNYHKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ EG+I L+ G I + + A K L +FG D Y+ +Q Sbjct: 119 RVDYELLEQYH-EGIIALSACIEGHIQQDILNHDEAAAIKTLQRLTGIFGKDDFYLEVQN 177 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + + + + LVATN+ +L + D A +V + ++ + ++ D + Sbjct: 178 HGIPEEKIVRRVFKEWSQQFGIRLVATNDYHYLKKNDAPAQEVKLCISTGSTLNNPDHFK 237 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y+K+ EM +F D+PEAL T+EIA +C+ L+ +P F + Sbjct: 238 FFNDSFYMKSYEEMAELFPDMPEALATTLEIAEKCNVELKFDERHVPSFPVPSGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + + LR L + + R+R+D+EL++IA+M F YFLIV D++++ Sbjct: 294 DASYLRKLCEQSLPEKYP-------TVTETVRKRVDYELDIIAQMGFPSYFLIVWDYVKF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ ++IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC + Sbjct: 347 ARDHHIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVTMPDIDMDFCYEN 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R ++I YV KYG + V+QIITFG+L AKA LRDVGR L++P S+V+R+ K++PN+ Sbjct: 407 RSKIIDYVTRKYGKDHVSQIITFGTLAAKAVLRDVGRVLEIPLSEVNRIVKMVPNELGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ RE DP + R + + + LEGL RHASTHAAGIVI P+ +P+ Sbjct: 467 LD-KALEQSRELRETVAKDPQIQRWMALGKALEGLVRHASTHAAGIVISAAPIDDYIPLQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 + TQ++ + +E+ GL+K DFLGL+TLT++ ++ + + +D IP DD Sbjct: 526 Y-SKEGYLTTQYDKELVEELGLLKMDFLGLRTLTVIGDTIKLIKENHGTDIDPDHIPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T +LT T G+FQ+ES G+ ++ + P ED+I LV+LYRPGP+ + + + Sbjct: 585 EATCRMLTMGDTAGVFQMESDGITALVKELAPKHFEDMIPLVALYRPGPLGSGMVEDFIK 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R +G+ + +HPL++P+L++T GVI+YQEQVMQIA + G++L +AD+LRRAMGKK + Sbjct: 645 RSHGETAVTYLHPLLEPILRDTYGVILYQEQVMQIASSMGGFTLGQADLLRRAMGKKKES 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q++ F++G NGI +A +F+L+ FA YGFNKSH+AAYA +++QTA++K HY Sbjct: 705 ILKAQRDLFLAGTRANGIEDEVAHKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 E +AA+MT +++V KI + + R+ I ++ P VNT F V + RI + L+ +K Sbjct: 765 RAELMAATMTSMINDVAKISYYISECRRHGIAVLSPDVNTSVSTFSVENGRIRFGLSGVK 824 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I++ PF SL DFCSRV+ +NRRV+ESL+ GA+D FG R QL+ Sbjct: 825 NVGENVIAVILQERQEGGPFTSLSDFCSRVNYHVVNRRVIESLIRCGAMDSFGKYRSQLI 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGF 961 Q LD +K+R +F + + ++ + + R E+ GF Sbjct: 885 QVLDRAMALGASKQKDRDTGQMGLFDEDDTEEALFDLSYPEIEEFSIEERLAMEKEYDGF 944 Query: 962 YFSGHPLDVYKPILRKMGIKGY--EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 YFSGHPL+ YK + + E G I ++ ++++ T++ + +T Sbjct: 945 YFSGHPLNKYKEQMAALTPLSALYGEHARQYDGKEIYCGGLISTQRRVTTKRKDLMAILT 1004 Query: 1020 FSEPAKEYEANFFP 1033 + + A FP Sbjct: 1005 LEDYTQTVTAVVFP 1018 >gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01] gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01] Length = 1159 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 411/1048 (39%), Positives = 605/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG Q + + ++ + +GY L L+S+ YL Sbjct: 60 CGVKPIIGADF----------LMQSPDFGDELTKLTVIATNNKGYNNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E EGLI+L+G G I +A + ++ + +K F DR Y+ Sbjct: 110 VQHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +LP+VATN +F+SE+ ++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSSQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFLI Sbjct: 284 EGLAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E D V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM+ ++ +QPD EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GALD G R ++ SL + K A + ++F + + + Sbjct: 883 ILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 KWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|320537716|ref|ZP_08037642.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421] gi|320145453|gb|EFW37143.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421] Length = 1139 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 375/1029 (36%), Positives = 567/1029 (55%), Gaps = 23/1029 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+GA S+ ++ QPA+A+TD N+F L F ++ I+P Sbjct: 2 DFVHLHVHSDYSLLDGASSIQKLVSTAKKLGQPALALTDHGNMFGVLRFQEECKKQEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC+L + + Q ++L+ GY+ L+ L S+ Y + Sbjct: 62 LIGCELYVAAKSRFDRNKQ--INGRNYYHLILIAKNEIGYRNLMVLSSKAYT-EGMYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + +EGLI L+ +G + + AE + + +FGD ++ +Q H Sbjct: 119 RID-DELLQAHSEGLICLSACLAGQLPYLLLNGRKEEAEAHVRKYLDIFGDNYFIEVQNH 177 Query: 190 RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + + ++++A +P+V TN+ + ++D A D+L+ + V + +R + Sbjct: 178 GLAEQKKVTPLLIEMARKLGIPMVLTNDVHYAEQKDSVAQDILLCIGMKKVRTDTNRMKF 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YLK+ EM +F + PE + NT+ IA C+ + P+LP + E + Sbjct: 238 ETDQFYLKSAEEMAKLFPEYPEMMSNTLRIADMCNVEIPQPGPLLPVYKIPEEF---ASK 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + +R+ GL+ + ++R ++EL++I +M F GYFLIV DFI WA Sbjct: 295 DLYIRHLVAEGLK-------TRYEVITDEIKKRAEYELDIIIKMDFVGYFLIVWDFINWA 347 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGS+ AYA+ ITDIDPLR+ LLFERFLNP+R+SMPDFD+DFC +RR Sbjct: 348 KNHDIPVGPGRGSGAGSIVAYAMRITDIDPLRYKLLFERFLNPERISMPDFDVDFCFERR 407 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L +P + V+ + KL+P DP + Sbjct: 408 QEVIEYVRQKYGDESVGQIITFGTLKPKAAIKDVGRVLNIPLADVNMITKLMPEDP--KL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + + P L +I++ LE R+ S HAAGIVIG L+ VP+Y+ Sbjct: 466 TFEKALTIPELVQIKET-PEYTELFQIAEALEDSNRNTSLHAAGIVIGKTKLTDYVPLYK 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIPFD 604 D ++ TQF M IE+ GL+K DFLGLKTLTL++ + D + +RG + I D Sbjct: 525 DSKTGKIATQFTMDLIEQCGLVKMDFLGLKTLTLIKHTEDLIRRRGGALANFSIQNICDD 584 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L + +FQ ES GM+ L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 585 DERTYKMLGEGMSAAVFQFESKGMQGILKRAKPDKIEDLIALNALYRPGPMAFIDQFIES 644 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K KI P + +L+ET GVI+YQEQVMQ+AQ + G SL EAD+LRRAMGKK KE Sbjct: 645 KFDNSKIKYPDPCLQDILEETYGVIVYQEQVMQVAQKIGGLSLGEADILRRAMGKKKKEV 704 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M + K +F A G K A IF++L FA YGFNKSHAAAY+V++YQTA++K ++P Sbjct: 705 MAEWKVKFAERAVTQGFDKKHAEEIFDILVPFAGYGFNKSHAAAYSVLAYQTAYLKANFP 764 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA++T E+ +V+K+ + ++A + + I+PPS+N F V I + IKG Sbjct: 765 AEFMAANLTNEITSVDKLPVYIEEAEKMGLTIVPPSINKSEPYFSVDKGEIIFGFLGIKG 824 Query: 845 VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG A I + + S DF RVD + + +E L+ G D F +R L+ Sbjct: 825 VGEQAAIDIYNERKTNGMYKSFIDFLDRVDLHTVKKSTVEVLIKTGCFDEFDINRATLIG 884 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 + YA ++ + + ++F + + + E+ ++GFY Sbjct: 885 QYEAAMGYATQKKEGQESGQVSLFENTGIKEFSDFVFARVEDLPQKEKLRMEKDLVGFYI 944 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHPLD Y+ I+ + M+ + + T+KG + + +F + Sbjct: 945 SGHPLDEYRKIIETTATLDLGHLERATPEKKYLIVGMLNAIKPYTTKKGQSMAFGSFEDL 1004 Query: 1024 AKEYEANFF 1032 + FF Sbjct: 1005 HGVIDLVFF 1013 >gi|187918442|ref|YP_001884005.1| DNA polymerase III subunit alpha [Borrelia hermsii DAH] gi|119861290|gb|AAX17085.1| DNA polymerase III alpha subunit [Borrelia hermsii DAH] Length = 1147 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 388/1035 (37%), Positives = 597/1035 (57%), Gaps = 23/1035 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ FVHL VHS YSLL+GA + +I+ K IA+TD NLF A+ F ++A Sbjct: 1 MDLKVDFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAVRFYREAKR 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + + K + ++LL GY+ L++L S YL + Sbjct: 61 VGIKPIIGIEAYMS--SISKHIKKNDEFGKPYYHLILLAKNELGYKNLLKLTSISYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ +++ +EGLI + G I + N A+ +L FK +FGD Y+ Sbjct: 118 FYYRPRMDKGDIEKY-SEGLICTSACIGGIIPQLILANRFDDAKNEILWFKSIFGDDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH + +++ + +PL +N+S +++ D A D+++ + S Sbjct: 177 ELQRHGIKQQDIVNEKLISYSRELNVPLTVSNDSHYVNRGDATAQDIIVCIGTGAKRSDP 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301 +R ++ T + Y+K++ EM +F DLPEAL NT++IA +C+ F ++ PI P + Sbjct: 237 NRLKMETDEFYIKSQEEMCELFRDLPEALANTLKIAEKCNDFEIKFPGPIFPEYQVPSEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D L + GL+ ++R +EL+ I +M F YFLIV Sbjct: 297 D---TLGQYLEYLTLEGLK-------FRYASITDSIKERAFYELSTIIKMGFEAYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+++ + L KLIP+ Sbjct: 407 FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFAESNELTKLIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + +D +E + L+E + LEG+ RH STHAAGIVI PL+ Sbjct: 467 GP--KVSLREVFEDGSLKEYLNKGAVYNELMEAALVLEGMNRHVSTHAAGIVIARTPLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + + ++ I Sbjct: 525 YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIKITNPDFSIANI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D +T+ +L+ + +FQ ES GM+Q L +PD IED+IAL +LYRPGP+ I + Sbjct: 585 SDSDAKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +L+ T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK Sbjct: 645 IAAKTGTKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM+K K FI GA G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N EK+ + +A+ I ++ P +N +F++ + I Y L Sbjct: 765 NYPENFMAANLTNEINNTEKLSYYIDEAKSMGIDVLKPDINQSFKEFRIVGHNISYGLNG 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I+ + + S EDF RVD K +N++ LE+ + +G D G +R Sbjct: 825 IKNIGGLIVDLIIAERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L ++LD + + + ++ ++F+ + + + F + + E+ + Sbjct: 885 LFENLDKLIAFVAKDKNDKKLGQNSLFSSLESQDVIVESFSYHVFEEYSYPELLKFEKDL 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017 LGFY SGHPLD YK L++ E +A + ++ A + + + T+K + R+ + Sbjct: 945 LGFYVSGHPLDPYKSELKRFTNFNILEDLAVRKNTIVKFAGSLSTVKVIHTKKNNARMAF 1004 Query: 1018 VTFSEPAKEYEANFF 1032 + + F Sbjct: 1005 GVIEDFKGVIDIVVF 1019 >gi|225376830|ref|ZP_03754051.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM 16841] gi|225211326|gb|EEG93680.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM 16841] Length = 1170 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 366/1060 (34%), Positives = 570/1060 (53%), Gaps = 53/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ +SLL+G+ + + ++ + AITD +F ++F + A AAGI P Sbjct: 2 AFTHLHVHTEFSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYKAAKAAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + +VLL EGYQ L+++VS+ + +D Sbjct: 62 ILGCEVYVAPNSRFDREAAHGE--DRYYHLVLLAENNEGYQNLMKIVSKGF-VDGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + LQ+ + G+I L+ +G + R A+K ++ FG ++ LQ Sbjct: 119 RVDMEVLQQYHS-GIIALSACLAGEVQRYLVKGLYDEAKKVAEKYENCFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ Q+V+++ + LVATN+ + ED EAHD+L+ + +S ++R R Sbjct: 178 HGIPEQQMVNPQLVRMSQETGIELVATNDVHYTYAEDAEAHDILLCIQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +FS +A++NT +IA RC ++ LP F E D Sbjct: 238 YEGGQYYVKSEEEMRKLFSFASQAIDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL R ++ +LD+ELNVI +M + YFLIV DFI + Sbjct: 294 SWTYLNKLCHEGLVKRYPD-------RHEELLPKLDYELNVIRKMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + IPVGPGRGS AGS+ +Y IT+IDP++++LLFERFLNP+R++MPD DIDFC +R Sbjct: 347 ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + V+QI+TFG+L AK +RDVGR + +PYS D + K+IPN+ Sbjct: 407 RSEVIDYVVKKYGKDCVSQIVTFGTLAAKGVIRDVGRVMDLPYSFCDTIAKMIPNELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R +D +V L+++S++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 IE-KALQMNPELRGMYESDENVRTLIDMSKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQF M IE+ GL+K DFLGL+TLT+++ + D + + + Sbjct: 526 RAS-DGTITTQFIMTTIEELGLLKMDFLGLRTLTVIKDAADLVYKNHGIKIDVNHIDYND 584 Query: 607 ET--------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 T + T T G+FQLES+GM+ ++ ++P +ED+IA +SLYRP Sbjct: 585 HTDPDAVLIDYNDKKVLDYIGTGRTEGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRP 644 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+D I Y KN ++ I ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD Sbjct: 645 GPMDFIPKYIKGKNERDSITYECKELEPILEPTYGCIVYQEQVMQIVQELAGYTMGQADN 704 Query: 713 LRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKS 764 +RRAM KK + +D +++ F+ G N IS+ A I++ + FA Y FNKS Sbjct: 705 IRRAMSKKKQYVIDAERQNFVYGNEEQGIKGCIANDISEQAANKIYDSMVDFAKYAFNKS 764 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAYAV+SYQTA+ K +YPVEF+AA MT +DN K+ ++ RQ I+++PP VN Sbjct: 765 HAAAYAVVSYQTAYFKYYYPVEFMAALMTSVIDNTRKVSEYIFTCRQMGIKVLPPDVNEG 824 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F + I Y L AIK +G I++ + + +L+ F RV +++N+R +E Sbjct: 825 EGVFTAVGDNIRYGLYAIKSIGRPVVDLILQEREENGTYKTLQSFLERVSCREVNKRAVE 884 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLE 941 +L+ AGALD +R Q++ I +K + +F E+ +I L Sbjct: 885 NLIKAGALDGLDGNRQQMITVFSTIMDNLASEKKKSMSGQMTLFDLVPEEEKKDYEIRLP 944 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGN 993 + + ++ E+ VLG Y +GHPL+ Y+ RK + V Sbjct: 945 QLEEYSKEIKLGFEKEVLGIYLTGHPLEEYEERWRKNISAVTTDFVLDEETNEVKVKDNQ 1004 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + M+ K K T+ + ++T + E FP Sbjct: 1005 KVTVGGMITEKTVKYTKNNKVMAFLTLEDLVGTVEVIVFP 1044 >gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 1166 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 432/1040 (41%), Positives = 616/1040 (59%), Gaps = 34/1040 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS YSL +G + + ++ + PAIA+TD NLF+ ++F Q A Sbjct: 1 MSTT-GFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAARE 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++ IIG ++ + D + S+VLL G++ L L+SR YL Sbjct: 60 AGVKAIIGSEVWLCPPDQPE----------DPSSLVLLCRDRTGFRNLSRLLSRGYLEGL 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ WL + TEGLI L+ + G + RA + VA + + + F + Y+ Sbjct: 110 RHGRPQLQHDWL-QGHTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYL 168 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ + V LAY +LP+VATNN+ FL ED++A D +A + + Sbjct: 169 ELQRNGEPGQEALLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDE 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR P+H L + +EM+ F DLPEA TVEIA+RC+ L + LP + + Sbjct: 229 RRPRRFNPEHRLASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSP 288 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 I + + A GL RL I YR+RL E++VI +M F GYFLIVAD Sbjct: 289 I----DVYFQKAAEQGLAERLEALGIDGAAATP-YRERLLREVDVIRQMGFPGYFLIVAD 343 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK +++PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLN +R+SMPDFD+DF Sbjct: 344 FIQWAKDHDVPVGPGRGSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDF 403 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI+YV +KYG +RV QIITFG+L+A+A +RDVGR L +PY VD+L KL+P D Sbjct: 404 CMEQRDRVIQYVADKYGRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGD 463 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + R + + V LL+I+ +LEG RHASTHA G+VIG PL+ Sbjct: 464 LGMTL-ARALEESEELRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADR 522 Query: 543 VPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRGVKV 596 +P++ D VTQ + +EK GL+KFDFLGL+TLT+L ++ A+ + Sbjct: 523 LPLFSDATEGSGNVTQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAAL 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL IP DD T+ LL + T+ +FQLESSGMR L +QPD DI+ALV+L+RPGP+ Sbjct: 583 DLQKIPLDDPATFALLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQ 642 Query: 657 NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + + RK+G+ + HP + P+L ET GV++YQEQVMQ AQ+L+GYSL AD+LR Sbjct: 643 SGMVDDFIARKHGRAAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILR 702 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+E F+ GA++ GI A IF+L+ KFA+YGFNKSH+AAYA++SY Sbjct: 703 RAMGKKKPEEMAKQREIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K HYP F+AA +T +MD+ +KI + R+ + I+ PSV ++F Sbjct: 763 QTAYLKAHYPSHFMAAVLTADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEG 822 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L AIKG+G + I+ A AD PF DF RVD ++LNRR LE+L+ AGALD Sbjct: 823 IRFGLGAIKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDD 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 G SR LL SLD + A R ++ ++ + S + R + Sbjct: 883 LGPSRECLLASLDAFLEAAAQTRAARDSQQISLLGAAEEQPS-APPWREAPAWTGIERLQ 941 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKG 1012 E+ LGFY SGHPL ++P L MG ++ G+ + +A +VV ++ ++++G Sbjct: 942 RERETLGFYLSGHPLLEHRPQLAAMG---AQDLGGLTAGSGLVLVAGIVVGRRSTRSKRG 998 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 RI ++T + + F Sbjct: 999 DRIYFLTLEDEVGRCDVVVF 1018 >gi|160931723|ref|ZP_02079117.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753] gi|156869368|gb|EDO62740.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753] Length = 1203 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 380/1048 (36%), Positives = 576/1048 (54%), Gaps = 41/1048 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL +H+ YSLL+GA +N ++D + ++AITD +++ ++F + A A GI Sbjct: 50 SGFVHLHLHTEYSLLDGACRINELIDTAVSQGAASVAITDHGSMYGVVDFYKAAKAKGIH 109 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + + + ++ + +VLL GYQ L +VS ++ + Sbjct: 110 PIIGCEVYVSPRKHTDKIHEFDS---ENRHLVLLCKNNTGYQNLAAMVSEAWI-NGFYNK 165 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L E +EGLI L+ +G I RA A+++ L + ++FG Y+ LQ Sbjct: 166 PRVDDEML-ETRSEGLIALSACLAGDIPRALVRGDYDAAKEKALKYNRIFGQGNFYLELQ 224 Query: 188 RHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245 H ++ + + ++ L+ +PLV TN+ ++ +ED + H VL+ + + T+ + Sbjct: 225 DHGIREQKQIAPMLIALSQETGIPLVVTNDCHYIHKEDSKMHQVLLCIQTNHTLEDDNNL 284 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + Y K EM S+F +PEA +NTV+IA C+ + LP F + D Sbjct: 285 EFGSDEFYFKTEEEMRSLFPQVPEACDNTVKIAEMCNVEFEFGNTKLPHFEVPDGQD--- 341 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 RN+ G E A R+RL++ELN I M + Y+LIV DFI+ Sbjct: 342 -HFEYFRNQCYEGFEKYYGTNADPS------VRERLEYELNTIKTMGYVDYYLIVHDFIR 394 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC + Sbjct: 395 YAKSVGIPVGPGRGSGAGSIAAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYE 454 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG + VAQIITFG++ A+ A+RDVGRA+ MPY+ VD + KL+P + Sbjct: 455 RRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRAMAMPYAAVDVIAKLVPMELGI 514 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + + ADP L+++++K+EG+ R ASTHAAG+VI ++P+S VP+ Sbjct: 515 TLERA-LKVSPELKARYDADPQTRELIDMARKVEGMPRQASTHAAGVVITEQPVSFYVPL 573 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 +D VTQ+ M +E+ GL+K DFLGL+TLT+L + + ++ ++ +P DD Sbjct: 574 --AKNNDAVVTQYTMTTLEELGLLKMDFLGLRTLTVLSDAEKMVRRKEPDFSIAHVPDDD 631 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 Y +L T G+FQ ES GM+ L + P +ED+IA++SLYRPGP+D+I Y + Sbjct: 632 PAVYRMLAEGSTNGVFQYESGGMKNVLVQLGPQSLEDLIAVISLYRPGPMDSIPKYIENR 691 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + E++ +HPL+ +L T G I+YQEQVMQI + L+GYSL AD++RRAM KK M Sbjct: 692 HHPERVTYLHPLLAGILDVTYGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKHSVM 751 Query: 726 DKQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 +K+++ FI G + G+S+ IA IF + FA Y FNKSHA AYA +S Sbjct: 752 EKERKIFIEGLVGGDGTVEVEGCIRRGVSREIAEKIFAEMESFASYAFNKSHATAYAWVS 811 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA+MK HYP EF+AA +T +DN K+ + ++ IQ++PP+VN F V Sbjct: 812 YQTAYMKYHYPKEFMAALLTSVLDNANKVAGYIEECSNMGIQVLPPNVNESGNGFTVTHG 871 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L AI+ +G ++E + S FC R+ +++NRR LESL+ +GALD Sbjct: 872 SIRFGLLAIRNLGRGFIARLLEEREQGGKYTSFYQFCKRLHGREMNRRTLESLIKSGALD 931 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 G +R Q+L + + +K + F D+I +S Sbjct: 932 GLGANRRQMLAVAETVLDNLDAEKKQNLDGQIGFFEAMGQAPRDEIAFPDVEEFPASELL 991 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRGNNIRLAAMVVSKQ 1005 E+ + G Y SGHP+ Y K+ E G N+ L ++ S + Sbjct: 992 SMEKEITGMYLSGHPMAAYAQAAAKLNAAKIGEIAEAHGEYDRYHDGTNVTLLCIINSVR 1051 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ S + +V + E FP Sbjct: 1052 LKTTKNNSTMAFVQIEDLYGGIEMLVFP 1079 >gi|89894058|ref|YP_517545.1| hypothetical protein DSY1312 [Desulfitobacterium hafniense Y51] gi|89333506|dbj|BAE83101.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1190 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 391/1039 (37%), Positives = 592/1039 (56%), Gaps = 36/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + ++ K P++AITD ++ ++F + AGI+PI Sbjct: 3 FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +VLL EGY+ LI+LVS ++ + R Sbjct: 63 IGCEVYVAPHRRTEKVPG---RDDNNRHLVLLAENEEGYKNLIKLVSMAHI-EGFYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L++ + GLI L+ +G + N + A + L ++++FG ++ +Q H Sbjct: 119 VDKDILRK-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R + + ++ +P+VATN+ ++++ED DVL+ + ++ R Sbjct: 178 GLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSF 237 Query: 249 TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + + ++ +F + PE LENT IA RC + LP F E Sbjct: 238 SSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YTL 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR K + + ++RLD+EL VIA+ FSGYFLIVADF Q+A Sbjct: 294 DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N I VGPGRGS A S+ AY + IT ++P++ LLFERFLNP+R+SMPD DIDF D R Sbjct: 347 RQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + VI YV KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D + Sbjct: 407 ERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTL 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+A + D + +L EI++ LEG+ RHASTHAAG+VI L +P+ R Sbjct: 467 E-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQR 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 +TQF MK +E+ GL+K DFLGL+ LT++Q++L + RG +DL +P DD Sbjct: 526 TSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T+ +L+ + G+FQLES GMR L+ ++P C EDIIA+V+L+RPGP++ I + RK+ Sbjct: 586 ATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G + +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK KE M+ Sbjct: 646 GGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIME 704 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA K G+++ A IF+L+AKFA+YGFNK HA AYAVISY Sbjct: 705 EERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVISY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YP+EF AA ++ M + +K+ + +ARQ I+I+PP V V F + Sbjct: 765 QTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGRG 824 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I + L AI+ VG I+EA + F+SL DFC RVD+K LN+RVLESL+ AGA Sbjct: 825 IRFGLGAIRNVGVNVVEKIIEARQEGLFESLYDFCIRVDAKVLNKRVLESLLKAGAF-SL 883 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R Q L +LD+I + AQ ++++ + ++F + I L + Sbjct: 884 LCKRAQGLLALDSILEVAQQRQRDKESGQISLF-DFGDNLDEGIELPDVEEYSPRELLTM 942 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y SGHPL+ P L+ + + + L +V + T++G Sbjct: 943 EKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGEM 1002 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + FP Sbjct: 1003 MASFVLEDLTGTIDVLVFP 1021 >gi|218665927|ref|YP_002425889.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1166 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 430/1037 (41%), Positives = 624/1037 (60%), Gaps = 33/1037 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 ++P FVHL VHS YSL +G + + + + A PA+AITD NLF+ ++F A G Sbjct: 2 RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P+IG ++ + + S+VLL GY+ L L+SR YL Sbjct: 62 VKPLIGSEVWVHDVAEPERPV----------SLVLLCMDKTGYRNLSRLLSRAYLEGSRH 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 +I ++WL E ++GLI L+ G I RA Q AE R + +LF +R Y+ + Sbjct: 112 GRPQIDVAWL-EGSSDGLIALSAAGQGEIGRAL-QRHPQQAESRARYYARLFPERFYLEV 169 Query: 187 QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR+ ++ Q V LA +LPLVATNN+ FL D+ A D ++ + R Sbjct: 170 QRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRR 229 Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P R TP+H L + EM F+DLPEA +NTVEIARRC+ L + LP + Sbjct: 230 PRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP----AN 285 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + + L + A GL+ RL + I Y +RL E+ VI +M F GYFLIVADFI Sbjct: 286 QSVDEYLHDAAQKGLQERLQELRITGDATLP-YHERLLREVGVIQQMGFPGYFLIVADFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ LLFERFLNP+R+SMPDFD+DFC Sbjct: 345 QWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCM 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY VD+L KL+P D Sbjct: 405 DQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + R + + V LL+I+ +LEGL RHASTHA G+VI PL+ +P Sbjct: 465 MTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLP 523 Query: 545 MYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598 ++ D VTQ + +EK GL+KFDFLGL+TLT++ ++ + D+ Sbjct: 524 LFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDI 583 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD T+ LL + T +FQLESSGMR + +QPD EDI+ALV+L+RPGP+ + Sbjct: 584 QQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSG 643 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + RK+GK ++ +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL AD+LRRA Sbjct: 644 MVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRA 703 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM KQ+ F+ GA KNG++ A IF+L+ KFA+YGFNKSH+AAYA++SYQT Sbjct: 704 MGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835 A++K HYP F++A +T +MD+ +K+ + + ++I PPSV ++F+ D+ I Sbjct: 764 AYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHI 823 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AIKG+G + I++A F +L D RVD++K+NRR LE+L+ AGA+D +G Sbjct: 824 RFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWG 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR L+ S+D + A + ++ + E++F+ ++ L + + E Sbjct: 884 VSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLRQE 942 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY SGHP+D + L +G + G+ + +A +VV+++ +T++G RI Sbjct: 943 RETLGFYLSGHPMDSLRDDLTALGTIPLGDVA---VGSTVLVAGLVVARRSTRTKRGDRI 999 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++T + E F Sbjct: 1000 YFLTLDDGQGRLEVVVF 1016 >gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236] gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236] Length = 1171 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 408/1049 (38%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A + Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L +GYQ L L+S Y Sbjct: 71 AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNDGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + + L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDLCLDFYQEHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE R+ + +Y +RL+ EL VI +M F GYFLI Sbjct: 295 GDMSTEDFLVEKSKQGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA + GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG +++A + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDEGEIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 V +GA D G R L+ SL K A K ++F + + Sbjct: 894 VMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + + E+ LG Y +GHP+ Y + + G ++ T RG +V++ Sbjct: 954 LWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTTAVGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546] gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546] Length = 1159 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 416/1048 (39%), Positives = 607/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG Q + + +L + GY+ L L+S+ YL Sbjct: 60 CGVKPIIGADF----------LMQSAEFGDELTKLTVLAADNTGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E+ +EG+I+L+GG SG I +A + +V + ++ F DR Y+ Sbjct: 110 VQHQPVIDKEWLVEL-SEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA ELP+VATN+ + L E ++AH++ +A+ + Sbjct: 169 ELTRTGRADEESYLHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE L K+ GLE RL + +Y +RL EL VI M F GYFLI Sbjct: 284 EGMEETEFLVMKSEEGLEERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E D + L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFKAEPALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVAIESIPLDDLASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDETGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R ++ SL + K A + ++F + + K Sbjct: 883 IYAGALDRLGPHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVE 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893] gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893] Length = 1160 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 413/1051 (39%), Positives = 597/1051 (56%), Gaps = 43/1051 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL+VHS YS+++G + + ++ ++A PA+ +T+ +N+ S + F + A Sbjct: 1 MSQT--FVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG L ++ D I LL +GY L E+VS Y Q Sbjct: 59 AGVKPIIGADLWVENPDEP----------DNPFRITLLARNNDGYLNLTEVVSLGYTEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E TEGLI L+G G + +A +A +R + L+ Y+ Sbjct: 109 RFGKPIIQRQWL-ENRTEGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYL 167 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR D V+LA P+VATN+ FL ED+EAH+ + + S + Sbjct: 168 ELQRTGRPGDEDCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YL++ EM+ +FSD+PEA+ENTVEIARRCS +++ LP + + Sbjct: 228 RRDRRFSDQQYLRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNYPIPDGM- 286 Query: 303 IQKEEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + R + GLE RLA+ + Y +RL+FEL++I +M F GYFL Sbjct: 287 ---TMDEYFRKVSEEGLEERLAKTLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI+WAK N +PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 344 IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D+L K+ Sbjct: 404 DVDFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP +P + +A+ + + E D + E++ KLEG+ R+A HA G+VI Sbjct: 464 IPFEPGMTLE-KALEQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTK 522 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 ++ P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 523 ITDFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIDWALKMINPRLEKQGK 582 Query: 597 ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D++ IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPG Sbjct: 583 PALDINEIPLDDVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 642 Query: 654 PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V + + + + P+L+ T GVI+YQEQVMQIAQ+++GYS Sbjct: 643 PLQSGMVDDFIDRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYS 702 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQK+ F+ G N I+KT+A NIF+L+ KFA YGFNKSH+ Sbjct: 703 LGNADMLRRAMGKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHS 762 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HYP EF+AA +T +M N +K+ ++ R ++++ P V+ Sbjct: 763 AAYALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRSMGLELLVPDVSRSEY 822 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y L AIKG+G I AD P+ + DFC RVD KK+N+R +E+ Sbjct: 823 TFTVNDDGAIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEA 882 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ +GA+D G R QL+ S+D + A +N T ++F D + Sbjct: 883 LIRSGAMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVA 942 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 R + E+ LG Y +GHP D Y+ +R+ + R+A +V Sbjct: 943 NVREWPKKERLKGEKDTLGLYLTGHPFDEYEKEVRRFVRSSIADLKPAR--QPQRVAGLV 1000 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+++ KTR GS + ++T + + EA F Sbjct: 1001 VAQRSMKTRTGSTMAFITLDDRSARIEATLF 1031 >gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 1173 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 420/1065 (39%), Positives = 611/1065 (57%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ +AA PA+A+TD +N+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G + + D + + LL +GY+ L EL+SR + Q Sbjct: 59 AGIKPICGADIWLAGCDE----------DGPLSRLTLLAMNPKGYRNLTELISRGWTEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I W++E EGLI L+G G I A +A RL ++++F DR Y+ Sbjct: 109 RNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA PLVATN+ FL +ED+EAH+ + + + Sbjct: 168 EVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + YLK EM +F+DLPEALENTVEIA+RC+ +Q+ LP F E Sbjct: 228 RRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMT 287 Query: 303 IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I ++ LR + GLE RL + Q Y RL+FEL I +M F GYFL Sbjct: 288 I----DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 344 IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+ Sbjct: 404 DVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKM 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + ++ R+ D + E++ KLEG+ R HA G+VI Sbjct: 464 IPFEVGMTLEKAYEMEEP-LRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTK 522 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593 L+ P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +L+ + + Sbjct: 523 LTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGL 582 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 V++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG Sbjct: 583 EPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPG 642 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+ Sbjct: 643 PLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYT 702 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH+ Sbjct: 703 LGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHS 762 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY ++SYQTAW+K H+P F+AA ++ +M N +K+ ++ R ++I PP VN Sbjct: 763 AAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEF 822 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L A+KGVG I E A+ PF L DFC+R+D K++N+R LE+ Sbjct: 823 KFTVNDDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEA 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGG 942 Query: 930 EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + + R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFAEPEADVYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLR 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARGEQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|219668439|ref|YP_002458874.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219538699|gb|ACL20438.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 1190 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 392/1039 (37%), Positives = 591/1039 (56%), Gaps = 36/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA + ++ K P++AITD ++ ++F + AGI+PI Sbjct: 3 FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + +VLL EGY+ LI+LVS ++ + R Sbjct: 63 IGCEVYVAPHRRTEKVPG---RDDNNRHLVLLAENEEGYKNLIKLVSMAHI-EGFYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+ + GLI L+ +G + N + A + L ++++FG ++ +Q H Sbjct: 119 VDKDILRR-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDH 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ R + + ++ +P+VATN+ ++++ED DVL+ + ++ R Sbjct: 178 GLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSF 237 Query: 249 TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + + ++ +F + PE LENT IA RC + LP F E Sbjct: 238 SSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YTL 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR K + + ++RLD+EL VIA+ FSGYFLIVADF Q+A Sbjct: 294 DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYA 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N I VGPGRGS A S+ AY + IT ++P++ LLFERFLNP+R+SMPD DIDF D R Sbjct: 347 RQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + VI YV KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D + Sbjct: 407 ERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTL 466 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+A + D + +L EI++ LEG+ RHASTHAAG+VI L +P+ R Sbjct: 467 E-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQR 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 +TQF MK +E+ GL+K DFLGL+ LT++Q++L + RG +DL +P DD Sbjct: 526 TSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T+ +L+ + G+FQLES GMR L+ ++P C EDIIA+V+L+RPGP++ I + RK+ Sbjct: 586 ATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G + +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL AD+LRRAMGKK KE M+ Sbjct: 646 GGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIME 704 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++++ FI GA K G+++ A IF+L+AKFA+YGFNK HA AYAVISY Sbjct: 705 EERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVISY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YP+EF AA ++ M + +K+ + +ARQ I+I+PP V V F + Sbjct: 765 QTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGRG 824 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I + L AI+ VG I+EA + FDSL DFC RVD+K LN+RVLESL+ AGA Sbjct: 825 IRFGLGAIRNVGVNVVEKIIEARQEGLFDSLYDFCIRVDAKVLNKRVLESLLKAGAF-SL 883 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R Q L +LD+I + AQ ++++ + ++F + I L + Sbjct: 884 LCKRAQGLLALDSILEIAQQRQRDKESGQISLF-DFGDDLDEGIELPDVEEYSPRELLTM 942 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y SGHPL+ P L+ + + + L +V + T++G Sbjct: 943 EKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGEM 1002 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + + + FP Sbjct: 1003 MASFVLEDLTGTIDVLVFP 1021 >gi|220909694|ref|YP_002485005.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7425] gi|219866305|gb|ACL46644.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7425] Length = 1162 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 381/1050 (36%), Positives = 577/1050 (54%), Gaps = 40/1050 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + ++P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPELIGRAQELGMPAIALTDHGVMYGAVELLKTCRGKSVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D K + + V+L GY+ L++L S L QGK Sbjct: 62 IIGNEMYVINGDITKQERRPR------YHQVVLAKNNTGYKNLVKLTSISNLKGVQGKGI 115 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L + EGLI+ + G I +A ++A + +K LF D Y+ Sbjct: 116 FSRPCINKELLTQYH-EGLIVTSACLGGEIPQAIMQGKPEIARRVAQWYKDLFKDDFYLE 174 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V+++ + ++ATN+S F+S D EAHD L+ + ++++ Sbjct: 175 IQDHGSQEDRVVNVELVRISQELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDK 234 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298 R R + YLK+ EM +F D +A+ NT+E+A + P P F Sbjct: 235 RLRYSGTEYLKSAEEMALLFRDHLPEEVIKQAITNTLEVAEKIEPYDIFREPQSPHFPVP 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E L + A GL R + ++ DYR+RL++EL ++ +M FS YFL Sbjct: 295 AG----HTAETYLEDVAWQGLLKRCNKN--SRSEIEPDYRERLEYELKMLQKMGFSTYFL 348 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D+I++A+ + IPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD Sbjct: 349 VVWDYIKYARDHGIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDI 408 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC DRRDEVI+YV KYG +RVAQIITF + +KA L+DV R L +PY + DR+ K+ Sbjct: 409 DTDFCIDRRDEVIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKM 468 Query: 479 IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP P L+ + D F+E DP+V ++++ ++EG + HAAG+VI Sbjct: 469 IPVSRGKPAKLKVMISDATPAPEFKEKYDKDPNVRHWIDMAIRIEGTNKTYGVHAAGVVI 528 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 PL ++VP+ R+ +TQ+ M+ +E GL+K DFLGLK LT+++K+LD + Q Sbjct: 529 ASEPLDEIVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMIEKTLDLIKQHKK 587 Query: 595 KVDLSLIPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D E+Y LL GIFQLESSGMRQ + ++P +EDI ++++LYRPG Sbjct: 588 TDLDLDRLPLDDAESYKLLARGELEGIFQLESSGMRQVVRDLKPSNLEDISSILALYRPG 647 Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D I + NRK+G+E I H ++ P+L ET G+++YQEQ+M+IAQ ++GYSL +AD Sbjct: 648 PLDAGLIPKFINRKHGRENIDYPHEILKPILNETYGIMVYQEQIMKIAQDMAGYSLGQAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM K +E F+ GA+KNG+ A +F+ + FA+Y FNKSH+ AY Sbjct: 708 LLRRAMGKKKVSEMQKHQEIFVEGAAKNGVKSKTAQELFDQMVLFAEYCFNKSHSTAYGY 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K +YPVE++AA +T + +K++K+ I + PP +N VDF Sbjct: 768 VTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIGSCLSMGISVEPPDINRSGVDFTPL 827 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I + L+A++ VG I+ A PF SL D C R+D + +NRR LE+L+ GA Sbjct: 828 EKSILFGLSAVRHVGEGAIADILAARESAGPFQSLADLCDRIDPRTVNRRALEALINCGA 887 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-------KGTFSDKITLEKF 943 +DC +R QL+ L+ + +++Q K+R N+F +F Sbjct: 888 MDCLELNRNQLIHDLELVLEWSQSRAKDRAIGQGNLFDMLGGSSTQSTSSFEAAPKAPPV 947 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ +LGFY S HPL + R + + M+ Sbjct: 948 PDLEQTEKLRLEKELLGFYISNHPLKEVQKTARILAPISLANLEDQPDNVTLSAIVMLTE 1007 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+KG + + + EA FP Sbjct: 1008 LKKVVTKKGDNMAIAQLEDLTGKAEAVVFP 1037 >gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1] gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1] Length = 1159 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 409/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A + Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++P+IG + Q + I +L + GY L L+S+ YL Sbjct: 60 SGVKPLIGADFAV----------QSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+G G + +A ++ +A++ ++ F DR Y+ Sbjct: 110 IQHQPVIDKAWLVEL-SEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN +F+ +E ++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + + YL++ +M +F+D+PEAL+N+VEIA+RC+ +++ + Sbjct: 229 KRPKKYSAQQYLRSEEDMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +E + L K+ GLE RL + +Y RL EL+VI +M F GYFLI Sbjct: 284 EGMKETDFLVMKSREGLEERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PADPGMTLE-KAFKAEPALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDSASFQLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLFR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVNEEGAIVYGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GALD G R ++ SL++ K A + ++F D + + Sbjct: 883 IMSGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQADMFGVLTDAPEDVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3] gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3] Length = 1159 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 416/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS +S+++G + ++ K+A PA+A+TD NL +++ A Sbjct: 1 MSD-PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + LL + EGY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ +EGLI+L+G +G I +A + +V + + + + F DR Y+ Sbjct: 110 VQHQPVLDKAWLAEL-SEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA ELP+VATN +F+SE+ ++AH++ +A+ + Sbjct: 169 ELVRTGRPDEETYLHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P+ YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 EE + L K+ GLE RL + +Y RL EL+VI +M F GYFLI Sbjct: 284 EGMEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKA-FKAEPALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDAPSFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + + ++PP +N Sbjct: 763 AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R L+ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1] Length = 1162 Score = 786 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 591/1030 (57%), Positives = 749/1030 (72%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PAIAITDTNNLF ALEFSQ G+Q Sbjct: 16 PRFIHLRVHSAYSLLEGALKIRQIIQHAISDHAPAIAITDTNNLFGALEFSQYCFTDGVQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID + K P+ SIVL ++ GY LI LVSR YL + Sbjct: 76 PIIGCQLAIDFEHENCDPRLIKPRNPSDFASIVLFAASEAGYAHLISLVSRAYLDKRDTD 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL EG+I LTGG +GPI+ A N + A + L K++FGDRLYV LQ Sbjct: 136 PPHIKADWLLS-QNEGIIALTGGWNGPINLALVENKKERAVEHLTYLKQIFGDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E+ +V+LAY HE+PLVATN + FL++E YEAHD LMAVA +VS +R R Sbjct: 195 RHSSYDRKVEAALVELAYEHEIPLVATNEAFFLNKEGYEAHDALMAVAEGQIVSNPNRRR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305 VTPDHYLK++ EMVS+FSDLPEALEN+VEIA RC + PILPRF E+ D + Sbjct: 255 VTPDHYLKSQDEMVSLFSDLPEALENSVEIALRCHTFVPTRKPILPRFTERSVDPDSALE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E EL N+A GL++RL +A+GY +DY QRLD+E++VI RM+F GYFLIV+DFI+ Sbjct: 315 DEAKELLNQAKVGLKMRLETIGLAEGYTVEDYEQRLDYEISVITRMQFPGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQD Sbjct: 375 WAKGHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQD 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P+ P Sbjct: 435 RREEVIQYVQEKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPSMPGS 494 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + AI D+ +F+E + +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 495 NIELAVAIRDEPKFKEEKKKNPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK +E+AGL+KFDFLGLKTLT+L+ + DF+A++GVKVDLS I + Sbjct: 555 MYRDPRSDMPVTQFNMKCVEQAGLVKFDFLGLKTLTVLKMATDFVARKGVKVDLSHISLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI YN R Sbjct: 615 DETTYTMLARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+GKE+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI +E Sbjct: 675 KHGKEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIHKE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ RF+ GA GI K A IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H+P Sbjct: 735 MQKQRTRFVRGAVDGGIDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ P V T C F++G+ IYYSLAAIKG Sbjct: 795 VEFLAASMTCDMTNTDKLNDFRREALRLGIEVIAPCVQTSCRVFEIGEKCIYYSLAAIKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G HI+ DKPF LEDFC R+D + +N+R +ESL++AGALDCF +R LL S Sbjct: 855 IGDLVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGALDCFQVAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + N ++ +IF G I L + S + + + +E +V+GFYFS Sbjct: 915 LGTLNARAIRIIDNNSSGQTDIFGMMGGPKEPLI-LSQASPWSLAEKLHHEFQVIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y+ IL K ++ + + ++ RLA +V+KQ +KT+ G ++G + FS+ Sbjct: 974 AHPLDEYQTILTKKRVQIWSDFSDAVKKGATAARLAGTIVAKQIRKTKSGKKMGVIQFSD 1033 Query: 1023 PAKEYEANFF 1032 + YEA F Sbjct: 1034 TSGHYEAVIF 1043 >gi|168185626|ref|ZP_02620261.1| DNA polymerase III subunit alpha [Clostridium botulinum C str. Eklund] gi|169296453|gb|EDS78586.1| DNA polymerase III subunit alpha [Clostridium botulinum C str. Eklund] Length = 1167 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 378/1062 (35%), Positives = 601/1062 (56%), Gaps = 58/1062 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+G+ + ++++ ++AITD +F ++F +KA AGI+PI Sbjct: 6 FVHLHTHTEYSLLDGSGKIGGLINRAKELGMDSLAITDHGTMFGCVDFYKKAKEAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + + N + +VLLV GY+ L+++VS+ + D R Sbjct: 66 IGSEIYVASKSMNIKRNDSEN---KNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFYYKPR 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L+E +EGLI L+ +G + + + A + L +K +F + Y+ LQ H Sbjct: 122 VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKEGFYLELQYHG 180 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +++L+ ++PLVATN+ ++ +ED ++HDVL+ + + +DR R Sbjct: 181 IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDEDRMRYE 240 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P ++ K+ EM + FS +PEALENTV+IA+ C+F H LP F E K+ Sbjct: 241 PQNFYLKSPEEMYNTFSYVPEALENTVKIAQECNFDYIFHESKLPNFPLPEG----KDHF 296 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ++ GLE + + +RL++EL VI M + YFLIV DF +++ Sbjct: 297 EYMKELCYKGLE-------VRYSEITPELEERLEYELGVIKEMGYVDYFLIVWDFFRFSH 349 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR Sbjct: 350 EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QI+TFG++ +A +RDVGRA+ Y++VDR+ K+IP + Sbjct: 410 EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + +EA +D V L+++++ LEGL RH STHAAG+VI +PL VP+ ++ Sbjct: 470 -KALEMNPELKEAYDSDNRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 + VTQF M +E+ GL+K DFLGL+TLT+++ ++D + + K+DL I F+D Sbjct: 529 --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLIEENTGTKIDLDKINFEDEN 586 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y +L T+G+FQLES+GM ++ ++P+ +EDIIA +SLYRPGP+ I Y KN Sbjct: 587 VYGMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I + P ++P+L T GV++YQEQVMQI + L+GYS+ +D++RRAM KK + M++ Sbjct: 647 PKNIEYLTPELEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706 Query: 728 QKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 +++ FI G KNGIS+ A I++ + FA Y FNKSHAAAYAV++Y Sbjct: 707 ERKNFIYGIEDEKGNVIVPGCLKNGISEDAANKIYDQMMDFASYAFNKSHAAAYAVVAYY 766 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++ +YP EF+AA + N +K+ + + A+Q I+++PP++N F V + +I Sbjct: 767 TAYLVYYYPTEFMAAILNSVRGNSDKVAVYIRAAKQMEIEVLPPNINKSFGKFTVQNGKI 826 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+AIK VG +I + + F+S DFC+++ S +N+R++ESLV AGA DCF Sbjct: 827 CFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGAFDCF 886 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFE 953 G R Q+L + I K + ++F F D +I + + Sbjct: 887 GIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKKNKLA 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991 E+ + G Y +GHPL+ Y+ ILR + + Sbjct: 947 MEKEMTGLYLTGHPLEEYEEILRNRTSAKTTDIIVDESLEEELIDEVTLHVEEQNSKIKD 1006 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ + +K TR S + ++T + E FP Sbjct: 1007 GDKVIICGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048 >gi|304312463|ref|YP_003812061.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1] gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1] Length = 1173 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 417/1043 (39%), Positives = 599/1043 (57%), Gaps = 32/1043 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P+FVHL++H+ YSL++G + + +++K A PA+A+TD + L+ ++F + A Sbjct: 17 TSAPTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPA 76 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PI G + + D + I LL +GY+ + +LVS +L Q Sbjct: 77 GVKPIYGADIWLANLDVEGSPSL----------ITLLAMDVQGYRNITKLVSEAFLTGQR 126 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L + +G+I L+GG G + +A AE+ L+ DR Y+ Sbjct: 127 NGKAIVSRELLHQF-ADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLE 185 Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +QR R D V LA LP+VATN+ FL DYEAH+V + + + Sbjct: 186 VQRTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPR 245 Query: 245 R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R + YLK+ EMV++F+DLPEALENTVEIA+RC+ + + LP + E I Sbjct: 246 REMNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTI 305 Query: 304 QKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ L ++A GL RLA Y +RL EL+ I +M F GYFLI Sbjct: 306 ----DSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFLI 361 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQWAK N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 362 VADFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFD 421 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC + RD VI YV KYG + V+QIITFGS+ AKA +RDVGR Y VDR+ KLI Sbjct: 422 VDFCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLI 481 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + + + + + +E AD V LL+++ KLEG+ R HA G+VI L Sbjct: 482 PFELGMTLEKA-MEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSAL 540 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + VP+Y D VTQ++ +E+AGL+KFDFLGL+TLT++ +L + R + Sbjct: 541 TNYVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEA 600 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ I DD T+ LL + T +FQLES GM+ ++ ++P EDIIALV+L+RPGP Sbjct: 601 AVDIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGP 660 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + + + RK+GK+ + HP + P+L T G I+YQEQVM I Q+L+GYSL AD+ Sbjct: 661 LGSGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADI 720 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK +EM KQ+ F G +KN I + +A IF+ + +FA YGFNKSH+AAYA++ Sbjct: 721 LRRAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALV 780 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K HYP F++A ++ +M N +KI F + R+ +QI+ P VNT F V D Sbjct: 781 SYQTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVND 840 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N I Y L AIKG+G I+EA A PF L +FC RVD KKLNRRVLE+L+ +GA Sbjct: 841 ANHIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGA 900 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 +D G R +L SLD K A ++ ++F G + Sbjct: 901 MDGMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDE 960 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LG Y +GHP+D ++ L + + R +A +V++ + K Sbjct: 961 LLQGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN 1020 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++G R+G++T + + E + F Sbjct: 1021 KRGDRMGFLTLDDKSGRMEVSLF 1043 >gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB] gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB] Length = 1160 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A + Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+IG ++ + + + +L S+ GYQ L L+SR Y Sbjct: 60 AGIKPVIGADFNVA----------SELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 110 GVDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN F++ ED++AH++ +A+ + Sbjct: 169 ELIRTGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMTTEDYLVVKSREGLEERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + + AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNDAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V+ + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|307720929|ref|YP_003892069.1| DNA polymerase III subunit alpha [Sulfurimonas autotrophica DSM 16294] gi|306979022|gb|ADN09057.1| DNA polymerase III, alpha subunit [Sulfurimonas autotrophica DSM 16294] Length = 1204 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 380/1088 (34%), Positives = 606/1088 (55%), Gaps = 70/1088 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K PSF HL +H+ YSLL+GA L+N++ ++ ++A+TD N+F A++F ++ Sbjct: 1 MSKQPSFTHLHLHTEYSLLDGANKLSNLVSRVKELGMTSVAMTDHGNMFGAIDFYKQMKG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + I + L G I L +GY+ L+ L S+ ++ + Sbjct: 61 AGLKPIIGMEGYIHNGETL-----GDKSTKQRFHICLYAKNKKGYENLMYLSSKAFI-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E +EGLI + G ++ + + A + Sbjct: 115 FYYFPRINKKELRE-HSEGLICTSACLQGEVNWHLNLQNERNVKNGALGYEGALNVAREY 173 Query: 175 KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 + +FG+ Y+ L RH D+ Y + Q+++++ + +VATN++ + +D + H+ M Sbjct: 174 QDIFGNDFYLELMRHGIGDQLYIDEQILKISRETGIKIVATNDTHYTYPDDAQYHEAFMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + + +R R + + Y+K+ EM +F+D+PEALE+T EI + + + Sbjct: 234 IGMNKLYDDPNRMRHSVHEFYIKSPDEMARLFADIPEALEHTQEITNKIEDFVPIVKTPT 293 Query: 293 PRFI-------------------EKECDDIQKEE------------ENELRNKAVAGLEV 321 P DD +EE K GLE Sbjct: 294 PPNFKFTQEYAKEEGLDIDYQDDPPLADDASEEEKKKWLSAADKNDAEYFIIKCREGLEK 353 Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381 RL I Q+YR RL+FE+++I MKF GY +IV DF++ AK+ + VGPGRGS Sbjct: 354 RLK---IVPKERHQEYRDRLEFEMDIINSMKFPGYMMIVWDFVKEAKRIGVAVGPGRGSA 410 Query: 382 AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441 AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+DF Q RR EVI YV KYG Sbjct: 411 AGSLVAYSLEITDIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVTKKYGRN 470 Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV---------SLQAI 492 +VAQIITFGSL AK +RDV R L MP S+ D++ KL+P++ + A Sbjct: 471 QVAQIITFGSLLAKGVIRDVARVLDMPLSKADQMAKLVPDELGITLNGKTKNGEFKDGAF 530 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + + RE +DP V R+ E ++KLEGL R+A HAAG+VI + L + P+Y+ D Sbjct: 531 QKEPKLRELVESDPQVGRVWEFAKKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPSGED 590 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHL 611 VTQ+++ ++E LIKFDFLGLKTL ++ ++ + +R +D I +D Y + Sbjct: 591 TFVTQYSLNYMEDVDLIKFDFLGLKTLDVIDNAIKLIKRRYDKDIDWHTIDENDKNVYDV 650 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669 + T T+G+FQ+ESSGM+ + ++P ED+IA+++LYRPGP+++ + + RK+G++ Sbjct: 651 IQTGETVGMFQIESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGRQ 710 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I + ++ +LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM K Sbjct: 711 EITYVFEALEEILKPTYGVIVYQEQVMQIVQTIGGFSLGGADIVRRAMGKKKVDEMLKYN 770 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F GA+K G+ A +F+L+ KFA YGFNKSH+AAYA++++QTAW+KT+YP EF+A Sbjct: 771 KEFSEGAAKQGLDYKTASELFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPNEFMA 830 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGV 845 A +T + DN EK+ ++ + ++ I++ PP + ++F I + L IKGV Sbjct: 831 ALLTSDKDNTEKVVRYIDEVKRMGIELSPPDICDSYLEFSAITKENREIILFGLGGIKGV 890 Query: 846 GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G ++E + + SL+DF +R++ K+N+RV+E+++ +G D +GYSR LL Sbjct: 891 GEAAIHAMIEEREENGDYASLQDFVNRIEPSKVNKRVVEAIIKSGGFDRYGYSRKALLDQ 950 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 ++ I A+ + + N ++F ++ + ++ L+ E E+ LGFY S Sbjct: 951 IELIVDTAKKASEAKKNVVGSLFGDDEEITTVRLELKNSDEYELKEILEFEKDTLGFYVS 1010 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 GHP+D ++ L ++ E + G+ V Q+K ++KG++ G V + Sbjct: 1011 GHPMDDFREELDELNYTLSSELESIKDGSFAIFIGKVEEIQKKISKKGNQFGIVNLMDFH 1070 Query: 1025 KEYEANFF 1032 E F Sbjct: 1071 GNIEIMLF 1078 >gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476] gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476] Length = 1155 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 591/1038 (56%), Positives = 755/1038 (72%), Gaps = 8/1038 (0%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +Y P F+HL+VHS+YSLLEGAL + I+ + +DQ PAIAITDTNNLF ALEFSQ Sbjct: 1 MQEYKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDQAPAIAITDTNNLFGALEFSQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119 + G+QPIIGCQL ID D + K + SI+L ++ GY L+ LVSR Sbjct: 61 YCLSHGVQPIIGCQLAIDFCDENDHSRLVKGRHASDFCSIILFAASETGYAHLVRLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 YL I WL E +EG+I LTGG GPI+ A + A +RL+ KK+F Sbjct: 121 YLDKCDTDPPHIKADWLSE-HSEGIIALTGGKGGPINLALSEEKKERAVERLIYLKKIFS 179 Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 DRLYV LQRH YDR E+++++LAY HE+PLVATN + FL E YEAHD LMAV+ + Sbjct: 180 DRLYVELQRHGSYDRGVEAELIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 239 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK- 298 VS DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ Sbjct: 240 VSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 299 Query: 299 -ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ + E++EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYF Sbjct: 300 AHSENTLEAEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEVSVITRMQFSGYF 359 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD Sbjct: 360 LIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 419 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L K Sbjct: 420 FDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 479 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V AI D+ +F E + DP V R L+I+ +LEGLYRHASTHAAGIVIGD Sbjct: 480 LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 539 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G K+ Sbjct: 540 RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARQGDKI 599 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DLS IP +D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++ Sbjct: 600 DLSNIPLNDEVTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 659 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA Sbjct: 660 NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 719 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI EM KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQT Sbjct: 720 MGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 779 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+MK +YPVEFLAASMT +M N +K+ F ++A + I+++ PS+ T F+VGD+ IY Sbjct: 780 AYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDHCIY 839 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 YSLAAIKGVG T HI+ +K F LEDFC+RVD + +N+R +ESLV AGA DCF Sbjct: 840 YSLAAIKGVGETVVDHIVACRGNKIFKDLEDFCARVDLRIVNKRAMESLVCAGAFDCFNI 899 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL +L I A + N ++ +IF E G I L + + + + E Sbjct: 900 AREILLANLGTIHARALRILDNNSSGQFDIFGMEGGLKEPLI-LSQTTPWLPAEKLYREF 958 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014 + +GFYFS HPLD Y+ IL K ++ + ++G RLA VV+K +KT+ G + Sbjct: 959 QAIGFYFSAHPLDEYQTILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1018 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G + FS+ + +YEA F Sbjct: 1019 MGIIHFSDTSGQYEAILF 1036 >gi|308048684|ref|YP_003912250.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] Length = 1165 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 423/1055 (40%), Positives = 604/1055 (57%), Gaps = 45/1055 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS +S+++G + +L ++A PA+A+TD NL ++F A Sbjct: 1 MSE-PKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG + +V+L GY L EL+SR YL Sbjct: 60 SGIKPIIGADFWM----------LSPLQGDEQSRLVVLAMNNTGYANLTELISRAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL+E+G EGLI+L+G G + +A + +A + ++ F DR YV Sbjct: 110 VDHRPVIDREWLEELG-EGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYV 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V A LPLVATN +FL +ED+E H++ + + + Sbjct: 169 ELHRTGRADDESYLHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDA 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ + + Sbjct: 229 RRPRLYSEQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPDFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE RL + Y +RL EL VI M F GYFLI Sbjct: 284 GDLKIEDFLVKVSEEGLEERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI + YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDRRDEVIEHTAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + +E D V L++I++KLEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFEVEPQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD A+ Sbjct: 523 TDFAPLYCDDEGKHPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM++ + ++PDC ED+IALV+L+RPGP Sbjct: 583 PVRIESIPLDDPRSFELLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P F+AA M+ +MDN +K+ + + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHFPSYFMAAVMSADMDNTDKVVTLVDECNRMGLPVLPPDVNQGLYK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+ A F L DFC+RVD KK+NRR +E L Sbjct: 823 FNVNEKEEIVYGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKL 882 Query: 886 VFAGALDCFG-------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 + AGA+D G R L+ +L+ K A +N +++F Sbjct: 883 ILAGAMDNLGPRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLFGTLTPEPEQAH 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + K + + + E+ LG Y +GHP++ Y L+K ++ T RG R Sbjct: 943 HSFVKVAPWSDKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGKTTRA 1002 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +V++ + T++GS++G T + + E F Sbjct: 1003 AGLVIASRIMITKRGSKMGIFTLDDKSGRLEVMLF 1037 >gi|239906002|ref|YP_002952741.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1] gi|239795866|dbj|BAH74855.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1] Length = 1154 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 408/1037 (39%), Positives = 594/1037 (57%), Gaps = 29/1037 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL H+ YSLL+GA+ + +++ + PA AITD NL AL F A A ++ Sbjct: 2 PDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAELK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + + +VLL GY+ L++L + + + Sbjct: 62 PIIGCEVYVSPTSRRDRDPRTPR-----YHLVLLAQNMTGYKNLLKLATLGHT-EGMYYK 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + G EGLI L+ G I++ A + LF DR Y+ +Q Sbjct: 116 PRVDKELLGQYG-EGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQA 174 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++ L+ LPLVATN+ +L +D EAHDVL+ + + V R R Sbjct: 175 NEIPEQAIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMR 234 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T EM + F+ +P+A+ N+ EIA R + L+ P + + + Sbjct: 235 FTTQDLYYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPGKSLDEV 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R L +G + Y RL+ EL+VI +M F GYFLIV DFI W Sbjct: 295 MADLARKGLTERLSKM-------QGADPKRYWDRLELELDVIKQMGFPGYFLIVQDFINW 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ R Sbjct: 348 AKNHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERR 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVIRYV YG E VAQI TFG+++AKA +RDVGRAL M + + DR+ KLIP D Sbjct: 408 RHEVIRYVTEHYGEEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+A + + D V +L+++S++LEGL RHASTHAAG+V+ D +++ VP+Y Sbjct: 468 ID-KALAQEPELKTLMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYVPLY 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 + +++ VTQ++MK +EKAGL+KFDFLGLKT+T++ +L + + DL +PF D Sbjct: 527 KG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLPFTD 585 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 TY L T GIFQ+ES GMR+ L ++P+C EDIIA+++LYRPGP+ + +V + Sbjct: 586 EATYELFAKGDTDGIFQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVELFIR 645 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G++ + HPL++ LK T GVI+YQEQVM+IAQ+L+ +SL D+LRRAMGKK E Sbjct: 646 RKHGEDPVEYPHPLLEETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKKNAE 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM KQ+ F+ G ++N I + A IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY Sbjct: 706 EMGKQRGFFVEGCAQNDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHY 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PV F+AA MT +M+N +K+ ++ R ++ ++PP VN F V DN+I Y LAA+K Sbjct: 766 PVAFMAALMTSDMENQDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLAAVK 825 Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I+ A + PF SL DF SRV+ +K+ +RV+E L+ GA D FG +R L Sbjct: 826 NVGRDAVAEIVAAREEGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRAGLA 885 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956 LD Q + + ++ + L + + E+ Sbjct: 886 AGLDQAAAIGQRRAAEKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMAFEK 945 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LGFY + HPL Y+ LR M + + G ++LA + VS ++ T+KG ++ Sbjct: 946 EALGFYLTSHPLLAYERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQKMA 1005 Query: 1017 WVTFSE-PAKEYEANFF 1032 + + E EA F Sbjct: 1006 FCKLEDHLGGEAEAVVF 1022 >gi|291525519|emb|CBK91106.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale DSM 17629] Length = 1166 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 355/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 2 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + ++LL GY L+++VS + + Sbjct: 62 VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ EGLI L+ +G I R A++ ++ FG D ++ LQ Sbjct: 119 RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ E+ LV TN+ + E D EAHDVL+ + VS +DR R Sbjct: 178 HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++K+ +M ++F EA+ENT +IA RC+ L+ +P++ E D Sbjct: 238 YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L G + + +D+EL +I M F Y LIV D+I W Sbjct: 295 AEAFLTELCEKGFREKYIGCGEYSDEELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMPD D+DF Sbjct: 355 CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL K++P + Sbjct: 415 RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F+ +D V +++++++LEGL H S HAAG+VI S VP+ Sbjct: 475 ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + RG+ VD+ I F+D Sbjct: 534 RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+D I Y K Sbjct: 593 KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + + Sbjct: 653 NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 D +++ F+ G NGI + A +I++ + FA Y FNKSHAAAYA IS QTA Sbjct: 713 DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K ++ R I+++PP +N +F + + Y Sbjct: 773 WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895 + AIK +G I+E + +L DF R K+L N+R +E+L+ AGA D Sbjct: 833 GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953 +R Q+ +I Q +K+ ++F ++ S ++ ++ Sbjct: 893 GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHPL+ Y L+K + V ++ + M+ +K Sbjct: 953 YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1012 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040 >gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01] gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01] Length = 1159 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + LL + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ Sbjct: 110 VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +E L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+RVD K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3] gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 415/1048 (39%), Positives = 606/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG Q + + +L S +GY L L+S+ YL Sbjct: 60 CGVKPIIGADF----------LMQSPEFGDELTKLTVLASDNKGYNNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E EGLI+L+G G I +A + + + +K F DR Y+ Sbjct: 110 IQHQPVIDKEWLIE-NAEGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +LP+VATN +FL+E+ ++AH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFLI Sbjct: 284 EGLAIEDFLIKKSEEGLERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E D V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDDDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GALD G R ++ SL + K A + ++F + + + Sbjct: 883 ILSGALDRLGPHRAAMMASLADAVKAASQYHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 RWSEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTIDDRSGRMEVMLF 1030 >gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B] gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + LL + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ Sbjct: 110 VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +E L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+RVD K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp. Ex25] gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25] gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp. Ex25] gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G + I+ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + Q + + LL + GY+ L L+S+ YL Sbjct: 60 SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E+ +EGLI+L+GG SG I R + Q+ + + +K+ F DR Y+ Sbjct: 110 VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN +FLS + ++AH++ +A+ + Sbjct: 169 ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +F+D+PEALEN+VEIA+RC+ +++ Sbjct: 229 RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 +E L K+ GLE RL + +Y +RL EL+VI +M F GYFLI Sbjct: 284 EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + + E AD V L+++ LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP +D ++ LL T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E I H + L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + + ++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA F L DFC+RVD K++N+RV+E L Sbjct: 823 FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 ++AGALD G R ++ SL++ K A + ++F + + + Sbjct: 883 IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030 >gi|270308619|ref|YP_003330677.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS] gi|270154511|gb|ACZ62349.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS] Length = 1170 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 375/1038 (36%), Positives = 575/1038 (55%), Gaps = 37/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+P+ Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K +VLL +GY LI+L SR ++ + R Sbjct: 62 LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFNEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D++ K+ EM + D+P+A+ENTV+IA C+ L LP K + Sbjct: 235 GDYFYLKSPEEMAEAYQDIPDAIENTVKIAEMCNVSLDFGRLHLPEIDIP----ADKTPD 290 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + GL +Q+ RL +EL+VI +F+ YFL+ D I++ K Sbjct: 291 EYLADLCYGGLPKFYPD-------ASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF DRR+ Sbjct: 344 EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP + Sbjct: 403 EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + + ++ D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ R Sbjct: 463 -KAMEESTELKDMFNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521 Query: 549 VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604 + + +TQ+ M+ I K GL+K DFLGL L +L K+ + + +D IP D Sbjct: 522 SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 582 DAKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G E I HP + P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 642 KHGLEPITYPHPALAPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQK FI GA KNG + IA +F L+ FA Y FNK+HA +YA+I+YQTA++K +YP Sbjct: 702 MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839 VE++ A + D EK+ +AR I+++PP +N V+F++ N +I + L Sbjct: 762 VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AA+K VG I+ + + S+ED C R + LN+RV+ESLV AGALD G R Sbjct: 822 AAVKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 LL +L NI AQ +K + + ++F + + + + V + + + E Sbjct: 881 GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++G + S HP Y +++ + + + +A MV S + TR+G Sbjct: 940 KELVGIFISEHPFTPYASSAQEVTTALCGQIDEELHNQPVTVAGMVASVRVSATREGKPF 999 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + E +P Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017 >gi|310658953|ref|YP_003936674.1| DNA polymerase III dnae [Clostridium sticklandii DSM 519] gi|308825731|emb|CBH21769.1| DNA polymerase III DnaE [Clostridium sticklandii] Length = 1150 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 379/1055 (35%), Positives = 601/1055 (56%), Gaps = 49/1055 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++K FVHL +H+ YSLL+G ++ ++ + A+AITD +F ++F +KA A Sbjct: 1 MDKK--FVHLHLHTQYSLLDGFAKIDKLIQRAKDYSMDAVAITDHGVMFGVIDFYKKAKA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + K ++LL +GY+ L++LVS + ++ Sbjct: 59 NGIKPIIGCEVYTASRTYKDKEGIDKKSG----HLILLAENEKGYRNLVKLVSMGF-VEG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 RI L+E +EGLI L+ +G I + + A++ L + +FG+ + Sbjct: 114 FYYKPRIDYKILKE-HSEGLIGLSACLAGEIQQKLMNGQYKEAKEIALMLRDIFGENNFF 172 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ + +L+ +PLVATN+ ++ ++D + HD+L+ + ++ Sbjct: 173 LELQDHGIREQKKVNIFLRKLSQDTGIPLVATNDVHYVDKDDAKTHDILLCIQTGKTLAD 232 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + + T + Y K++SEM +F D +AL NT EIA RC+ + LP + E Sbjct: 233 EHKMEFETDEFYFKSQSEMYELFPDDAQALRNTWEIANRCNVDFDFNTIHLPEYSVPE-- 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K LR GL ++RLDFELNVI M + YFLIV Sbjct: 291 --NKAPSEYLRQLCQDGL-------VDRYKTIDSKLQERLDFELNVIENMGYVEYFLIVW 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI ++K++NI VGPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DID Sbjct: 342 DFIDFSKRSNIMVGPGRGSAAGSIVAYTLGITDIDPIKYGLLFERFLNPERVSMPDIDID 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++R++VI YV+ KYG + V+QIITFG+L A++++RDVGR + + YS VD++ K IP Sbjct: 402 FCYEKREKVIDYVREKYGSDHVSQIITFGTLGARSSIRDVGRVMGISYSDVDKVAKEIPF 461 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + R+ D L+++++ +EGL RHASTHAAG+VI P+ Sbjct: 462 ALNMTIE-KALDLNPNLRKIYNEDEKARELIDVAKNVEGLPRHASTHAAGVVISKEPVDH 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+Y + + TQF M +E+ GL+K DFLGL+TLT++QK++D + + R + +D S Sbjct: 521 YVPLYT--QDNAVTTQFPMTTLEELGLLKMDFLGLRTLTVIQKAIDIILRTRNITIDFSN 578 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +DD Y LL++ TLG+FQLESSGMRQ ++ ++P+ EDI+A +SLYRPGP+D+I + Sbjct: 579 SDYDDKAVYELLSSGDTLGVFQLESSGMRQFMKELKPETFEDIVAGISLYRPGPMDSIPL 638 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN + +V H I P+L+ T+G+++YQEQVMQ+ + L+GYS +D++RRAM KK Sbjct: 639 YIKNKNNPDSVVYDHESIRPILEVTRGILVYQEQVMQVVRDLAGYSYGRSDLVRRAMSKK 698 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 + M++++ F+ G +NGI + IA IF+ + FA+Y FNKSHAAA Sbjct: 699 KMDVMEEERRNFVYGKEDENGNIEINGCVRNGIPEKIANKIFDDMIDFANYAFNKSHAAA 758 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV++Y+TA++K +YPVEF+AA MT M N +K+ ++ ++ + I+++ P VN +F Sbjct: 759 YAVLAYETAYLKAYYPVEFMAAIMTSVMGNTDKVVEYIRECERLKIEVLKPDVNKSFTEF 818 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V +N I YSL A+K VG +++ + + +DF R+D K +N+R +ESL+ Sbjct: 819 AVENNHIRYSLCAVKNVGVHFVENLVAEREEKGIYIDFDDFAKRLDKKDINKRTIESLIK 878 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 GA D +R ++ + I KN ++F + K + + S N Sbjct: 879 CGAFDELIPNRASIMAGYEKILSSISNSRKNNIEGQVSLFDTQLQN-EVKAKIIELSEFN 937 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---------IRGNNIRLA 998 + + E+ VLG Y SGHPL+ YK +L ++ ++++ Sbjct: 938 DKEKLQMEKEVLGLYLSGHPLNEYKDMLSRITTTTTLTLREMKDNYIENQFKDNMSVKIG 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ K K T+ + ++T + E FP Sbjct: 998 GVINKKSIKSTKNKDMMAFLTLEDIYGTVEIIVFP 1032 >gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032] gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032] Length = 1160 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 430/1049 (40%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG ++ Q I +L + GYQ L L+SR Y Sbjct: 60 VGMKPIIGADFNM----------QCDLLGEDFSHITVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+G EGLI+L+GG G + + ++ +AE+ L +++ F DR Y+ Sbjct: 110 GAAGPWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELVRTGRPDEERYLHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL+ EM +FSDLPEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL Q Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + +E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +LD + R K L Sbjct: 523 TDFAPLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A ++++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473] gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473] Length = 1173 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 410/1049 (39%), Positives = 596/1049 (56%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+A+TD NL ++F A Sbjct: 14 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSAHG 72 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + +L +GYQ L L+S Y Sbjct: 73 AGIKPIIGADFCV----------QSDMLGDELAQLTVLAKNNQGYQNLTLLISEAYQRGY 122 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+GG G + + + ++ L +++ F D Y+ Sbjct: 123 GPAGPTIDRDWLIK-HREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSYYL 181 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ E D++AH++ +A+ + Sbjct: 182 ELIRTGRPDEENYLHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 241 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 242 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 296 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 297 GDMSTEDFLVEKSRQGLEERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYFLI 356 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 357 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 416 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 417 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 476 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 477 PPEPGMTLE-KAFEAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 536 TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 595 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 596 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 655 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 656 LQSGMVDNFIDRKHGREALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 716 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSHSA 775 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 776 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 835 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 836 FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILEKL 895 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 V +GA D G R L+ SL K A K ++F + + Sbjct: 896 VMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 955 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG +V + Sbjct: 956 HWQEQVVLDGERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTAVGLVTA 1015 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1016 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1044 >gi|291539914|emb|CBL13025.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia intestinalis XB6B4] Length = 1156 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 357/1047 (34%), Positives = 577/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A AAGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + +VLL +GYQ L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNKGYQNLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L+ EG+I L+ +G + R + A++ ++K FG ++ LQ Sbjct: 119 RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +++++ + LVATN+ + ED E HD+L+ + +S ++R R Sbjct: 178 HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +++K+ EM ++F +A++NT +IA RC+ ++ LP F E D Sbjct: 238 YEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL R ++ +LD+EL+VI +M + YFLIV DFI + Sbjct: 294 SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R Sbjct: 347 ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K IPN+ Sbjct: 407 RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + I + R +D +V RL++++++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 IDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++ ++ G+K+D+ I ++D Sbjct: 526 RSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y K Sbjct: 585 KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + + Sbjct: 645 NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 D +++ F+ G NGIS+ A I++ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F + I Y Sbjct: 765 YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + AIK +G I+ A+ + +L DF SRV +++N+R +E+L+ AGA D Sbjct: 825 GMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954 +R Q+L + + +KN ++F E+ + ++ ++ Sbjct: 885 NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ RK + + ++ + ++ K Sbjct: 945 EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T++ + ++T + E FP Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031 >gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34] gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34] Length = 1159 Score = 785 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 401/1048 (38%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + I+ K + PA+A+TD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + LL + EGY+ L L+S Y Sbjct: 60 AGIKPIIGADFKV----------QSAEMGDELFELTLLAANNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL EGLI+L+GG +G + +A + ++ + + ++ F D Y+ Sbjct: 110 VQHQPVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYL 168 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LP+VATN+ L+ + ++AH++ +A+ + Sbjct: 169 ELVRTGRVDEEAYLHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ + Sbjct: 229 NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL V+ ++ F GYFLI Sbjct: 284 GDMTIEDFLITKSREGLEERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + +A AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++++ IP DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PINIAAIPMDDQKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+ +E + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHAREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G +R +L +LD+ K A + ++F + + Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 943 EAPDKVWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|239993623|ref|ZP_04714147.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126] Length = 1154 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 415/1042 (39%), Positives = 592/1042 (56%), Gaps = 33/1042 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL+VHS +S+++G + IL K+AA PA+AITD N+ ++F +A GI Sbjct: 2 SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + + L+ EGY+ + L+S+ YL Sbjct: 62 KPIIGTDFWVTNE----------VFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSH 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL E +EG+I L+G G + N++++ + L ++ F DR Y+ L Sbjct: 112 RAVIDQEWLAE-HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELI 170 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + V+LA LP+VATN F+ E ++AH++ + + + RP Sbjct: 171 RTGRQGEEDYLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRP 230 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL+ EMV +FSD+PEA+ENTVEIA+RC+ ++++ + + Sbjct: 231 KRYSDQQYLRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNE-----YFLPQFPTGGM 285 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + GLE RL + +Y RL EL VI +M F GYFLIV + Sbjct: 286 TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 346 FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 406 CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A + + E +D V L+++++ LEG+ R+A HA G+VI ++ Sbjct: 466 PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I Sbjct: 525 SPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P +D +++ L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V Sbjct: 585 PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644 Query: 661 ------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD+LR Sbjct: 645 NFIDRKHGREEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F GA N I +A+ IF+L+ KFA YGFNKSH+AAYA++SY Sbjct: 705 RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QT W+K HYP EF+AA M+ +MDN +KI + + I+I+PP +NT F V + Sbjct: 765 QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNTGKYKFTVDSEG 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 RI Y + AIKGVG I+EA F L DFC+++D K++N+RVLE LV AGA+D Sbjct: 825 RIVYGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR 951 G R L+ SL A K + ++F D K V Sbjct: 885 NLGPHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPEKVW 944 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E E+ LG Y +GHP++ Y LR + T + +V+ + ++ Sbjct: 945 LEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKR 1004 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R VT + + + FFP Sbjct: 1005 GRRWAIVTLDDKSARIDVRFFP 1026 >gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380] gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380] Length = 1171 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 409/1049 (38%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 12 MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + + +L EGYQ L L+S Y Sbjct: 71 AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + +GLI+L+GG G + + + + ++ L +++ F D Y+ Sbjct: 121 GAAGPIIDRDWLIK-HKDGLILLSGGRMGDVGKFILRGNQVLVDQCLEFYQQHFPDSYYL 179 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F++E D++AH++ +A+ + Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDP 239 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + Y +RL+ EL VI +M F GYFLI Sbjct: 295 GEMSTEDFLVEKSKQGLEERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 415 VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 475 PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 534 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 594 PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 654 LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G++ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 774 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 833 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG ++EA + F L D C+RVD+KKLNRR+LE L Sbjct: 834 FHVNDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 894 IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 954 RWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1014 SRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042 >gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 1151 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 530/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K Sbjct: 1 MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI+G +L ID D + G P IVLL + +GY+ L+ L SR +L Sbjct: 60 YGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q + L WL E T+G+I LTGG GPI A +A +R ++ FGDRLYV Sbjct: 118 VNQVPHVKLEWL-EGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ Sbjct: 176 ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299 DR + TPDH K R+EM +F+DLPEAL +TVEIA+RC++ P + Sbjct: 236 DRVQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSD 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E ELR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLI Sbjct: 296 AAEAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD Sbjct: 356 VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 416 IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA P++ QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRP Sbjct: 476 PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL Sbjct: 536 LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 596 HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG Sbjct: 656 PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 716 KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N I+Y+ Sbjct: 776 MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYA 835 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LA +KGVG + I+EA D+PF SL DF +RV+ + +N+RV+E L AGA DC +R Sbjct: 836 LAGLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNR 895 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ D I Q + T+ ++F + I L + + R E Sbjct: 896 ARVFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDA 953 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 954 IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1014 IIGLSDPTGHFEAVLF 1029 >gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242] Length = 1153 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 526/1040 (50%), Positives = 697/1040 (67%), Gaps = 18/1040 (1%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + K+ P FVHL VH+++SL EGALS+ ++D D+QPA+A+TDTNNLF+ALEFS+KA Sbjct: 1 MTKADPGFVHLHVHTAFSLREGALSIGKLIDLAVRDEQPALAVTDTNNLFAALEFSEKAA 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AG+QPI G QL +D D G+ + ++VLL T GY+ L+ L SR YL Sbjct: 61 KAGLQPIAGVQLCVDFGDGKSGGLAGQ--DERLANLVLLAKTEAGYRNLMRLASRAYLET 118 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + L+ L E LI LTGG G +DRAF + A RL +++F +RLY Sbjct: 119 EQGDAPHVTLAALSADAEE-LIALTGGPDGALDRAFAAGRPEQARARLDVLERMFNNRLY 177 Query: 184 VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +QRH+ + E Q++ +AY LPLVATN F S D+EAHD L+ +A TV S Sbjct: 178 IEIQRHKLKLELEVEPQLLDIAYRRGLPLVATNEPYFASLGDFEAHDALLCIAEGTVTSV 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R RV+P+H+ K R++M ++F+DLPEA NTVEIARR SF + PI+PRF+ DD Sbjct: 238 SERRRVSPEHWFKTRADMRALFADLPEATANTVEIARRVSFRPKTRKPIMPRFMRDTPDD 297 Query: 303 --IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + E ELR +A GLE RLA A+G+ +DY RLDFEL+ I +M F GYFLIV Sbjct: 298 RPLNEVEAEELRRQATEGLEARLAAHGPAEGHAREDYFARLDFELSTIEKMGFPGYFLIV 357 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI++AK IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+R+SMPDFDI Sbjct: 358 SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERVSMPDFDI 417 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ RR EVI YV+++YG +RVAQIITFGS A+ LR VGR L+MP QVD+L KL+P Sbjct: 418 DFCQTRRGEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 477 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +PA PV+ +A+A + + REA D V RL +++ LEGLY +ASTHAAG+VIGDRPL Sbjct: 478 QNPAKPVTLAEALAGEQKLREAAAEDERVARLFKVAGALEGLYSNASTHAAGVVIGDRPL 537 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 ++ P+YRD +SD+P TQFNMKW+E AGLIKFDFLGLKTLT+L + D +R DL+ Sbjct: 538 HEVTPLYRDPKSDMPATQFNMKWVEPAGLIKFDFLGLKTLTVLAMAGDLARRRDPDFDLA 597 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD ETY +L T+G+FQLES+GMR+AL M D EDIIALV+LYRPGP+ NI Sbjct: 598 KVPLDDPETYAMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIP 657 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K G E+ HP I+P+LKET GVIIYQEQVMQIAQ+LSGY+L EAD+LRRAMGK Sbjct: 658 TYCAVKLGDEEADYYHPKIEPILKETFGVIIYQEQVMQIAQVLSGYTLGEADMLRRAMGK 717 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIK EMD Q+ERF+ GA + + +A IF+LLAKFADYGFNKSHAAAYA+I+YQTAW Sbjct: 718 KIKAEMDAQRERFVKGAIEREVKADLANFIFDLLAKFADYGFNKSHAAAYALIAYQTAWF 777 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834 K HYP EFLAASMT + +K+ +F +AR+ I + PPS+ VDF V Sbjct: 778 KAHYPAEFLAASMTFDKSQTDKLAEFRDEARRLGIAVEPPSIRRSGVDFDVAPGSDGKLA 837 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y+L+AIKGVG A I+ A D PF SL DF R++ +++N++VLE+L GA D Sbjct: 838 IRYALSAIKGVGEGQAESIVRARGDLPFKSLSDFARRINPREVNKKVLENLAACGAFDEL 897 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R +++ + A ++R +F + D + L + + N++ R + Sbjct: 898 QPDRATAFAAVEPVLAAANRHTEDRKAGQNALFGEAEA---DDLVLPRVTPWNAAERLQR 954 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKG 1012 E GF+ SGHPLD Y +L K+ + + + VA ++G RLAA+V+ + +++T+ G Sbjct: 955 EYDAAGFFLSGHPLDAYAGLLPKLRVSRWSKFVADVKGGATAGRLAAVVLDRAERRTKSG 1014 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 S++G V S+ +YEA F Sbjct: 1015 SKMGIVQLSDTTGQYEAILF 1034 >gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4] gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4] Length = 1177 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 407/1047 (38%), Positives = 589/1047 (56%), Gaps = 38/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + I+ K+A PA+A+TD N+ ++F + Sbjct: 22 MSD-PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHG 80 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + + F SI L +GY L L+S YL Sbjct: 81 NGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNKGYSNLTLLISDAYLRGN 129 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + EGLI+L+G G + RA + + + +K F DR Y+ Sbjct: 130 INDKAVIDQEWLVKY-NEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRYYL 188 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +LP+VATN +F E ++AH++ +A+ ++ Sbjct: 189 ELLRTGRPDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADP 248 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y K+ EM +F D+PEA++NTVEIA+RC+ +++H Sbjct: 249 RRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYF-----LPNFPT 303 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 304 GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLI 363 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 364 VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 423 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 424 VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 483 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ + LEG+ R+A HA G+VI + Sbjct: 484 PAEPGMTL-AKAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 542 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L Sbjct: 543 TDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNGEE 602 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 603 PVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 662 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 663 LQSGMVDNFIERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGYTL 722 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 723 GGADMLRRAMGKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSHSA 782 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 783 AYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLIPPDVNKGLFR 842 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V ++ I Y + A+KGVG I++A + PF L DFC+R+D KKLNRRV+E L+ Sbjct: 843 FTVDEDLNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEKLI 902 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 903 CAGALDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQRFVECTP 962 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 963 WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVATR 1022 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+++G VT + + E F Sbjct: 1023 VMMTKRGAKMGLVTLDDKSARLEVMLF 1049 >gi|238923437|ref|YP_002936953.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875112|gb|ACR74819.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1181 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 355/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 17 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 76 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + ++LL GY L+++VS + + Sbjct: 77 VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 133 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ EGLI L+ +G I R A++ ++ FG D ++ LQ Sbjct: 134 RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 192 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ E+ LV TN+ + E D EAHDVL+ + VS +DR R Sbjct: 193 HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 252 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++K+ +M ++F EA+ENT +IA RC+ L+ +P++ E D Sbjct: 253 YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 309 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L G + + +D+EL +I M F Y LIV D+I W Sbjct: 310 AEAFLTELCEKGFREKYIGCGEYSADELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 369 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMPD D+DF Sbjct: 370 CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 429 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL K++P + Sbjct: 430 RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 489 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F+ +D V +++++++LEGL H S HAAG+VI S VP+ Sbjct: 490 ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 548 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + RG+ VD+ I F+D Sbjct: 549 RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 607 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+D I Y K Sbjct: 608 KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 667 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + + Sbjct: 668 NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 727 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 D +++ F+ G NGI + A +I++ + FA Y FNKSHAAAYA IS QTA Sbjct: 728 DAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 787 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K ++ R I+++PP +N +F + + Y Sbjct: 788 WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 847 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895 + AIK +G I+E + +L DF R K+L N+R +E+L+ AGA D Sbjct: 848 GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 907 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953 +R Q+ +I Q +K+ ++F ++ S ++ ++ Sbjct: 908 GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 967 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHPL+ Y L+K + V ++ + M+ +K Sbjct: 968 YEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1027 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1028 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1055 >gi|291544638|emb|CBL17747.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus sp. 18P13] Length = 1161 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 369/1041 (35%), Positives = 586/1041 (56%), Gaps = 35/1041 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YSLL+GA + ++ +I Q A+AITD ++ A+EF Q A AGI+ Sbjct: 2 PDFVHLHVHTEYSLLDGACRIQQLIQRIKELGQTAVAITDHGCMYGAVEFWQAAKEAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC++ + + ++ T + +VLL GYQ LI+LVS Y+ + Sbjct: 62 PIIGCEVYVAPRSRHDKVHRLDT---SPYHLVLLCRNQTGYQNLIKLVSLGYI-EGFYNK 117 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L L++ EGLI L+ +G I R A++ L ++++FG D Y+ +Q Sbjct: 118 PRVDLELLEQYH-EGLICLSACLAGEIPRRLVNGDYAGAKEAALRYRQIFGADSYYLEVQ 176 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245 H ++ Q+ +L+ +PLVATN++ +++ ED VL+ + + V Sbjct: 177 DHGIREQKTILPQLYRLSRETGIPLVATNDAHYITREDASLQHVLLCIQTNKTVEDPTGM 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 T + Y+K+ +EM +FS +P+A+ NTV IA +C+ LP F D Sbjct: 237 GFETDEFYVKSGAEMAELFSAVPDAISNTVRIAEQCNVEFTFGQLKLPAFQ----MDGVT 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + ++ GL R + A + R+R+ +EL VI +M + YFLIV DFI+ Sbjct: 293 DTTAFFQHLCREGLHRRYGED------PAPEIRERMQYELRVIQQMGYVDYFLIVWDFIR 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ +PVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC + Sbjct: 347 YARQIGVPVGPGRGSGAGSLCAYCIGITGIDPMRYHLLFERFLNPERVSMPDFDIDFCIE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R VI YV KYG +RVAQII F +++A+AA+RD GRA+ +PY DR+ KLIP + Sbjct: 407 GRQRVIDYVIEKYGSDRVAQIIAFDTMKARAAVRDTGRAMALPYGLCDRVAKLIPGELNM 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + A+ E D V +LL+++Q+LEG+ RHA+THAAG+VI P+S+ VP+ Sbjct: 467 TI-AGAMKVSKELTELYDTDSRVHKLLDMAQRLEGMPRHATTHAAGVVIASAPVSEFVPL 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 ++ + VTQ+ M +E+ GL+K DFLGL+ LT+++ + + Q + IP DD Sbjct: 526 QKN--EESIVTQYPMTTLEQLGLLKMDFLGLRNLTVIRDACRAIQQLEPDFRIDQIPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 Y +++ T G+FQ ES+GM++ L ++P C+ED+IA++SLYRPGP+++I Y + Sbjct: 584 PAVYRMMSQGKTGGVFQFESAGMQRVLTKLEPTCMEDLIAVISLYRPGPMESIPRYIRNR 643 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 + E+I HPL+ P+L+ T G ++YQEQVM+I + L+GYS AD++RRAM KK + M Sbjct: 644 HAPEQITYAHPLLKPILQVTYGCMVYQEQVMEICRSLAGYSYGRADLVRRAMAKKKHKVM 703 Query: 726 DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 + +++ F GA NG+ + A IF+ + FA Y FNKSHAAAYA ++ Sbjct: 704 EAERQTFLWGSRESDGTVSCPGAVANGVPEATANEIFDQMTSFASYAFNKSHAAAYAYLA 763 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K HY +++AA MT + N K+ ++ ++ + + P VN + F VG Sbjct: 764 YQTAYLKCHYFPQYMAALMTSVLSNTPKLMEYIALCEEYGMAVCRPDVNVSDMGFTVGSK 823 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I++ L A+KG+G +++ + + S DFC R+ + +R +++L+ GALD Sbjct: 824 GIHFGLLAVKGLGKGVISQVIQERQEHGLYHSFLDFCERMVQLDVGKRTVDNLIRCGALD 883 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 G++R ++L + I + ++F + + + + K + Sbjct: 884 GLGHNRREMLMCYEQIMDAQAGSSRTLIQGQMDLFG-QGSAMPESVPIPKMEEFPPNQLL 942 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ + G Y SGHPL + + + + +E G I + M+ S + R G Sbjct: 943 RMEKELTGMYLSGHPLGHLQWCRKLLRLPELKELQDEKDGTGISVLCMLQSVKPHVARNG 1002 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 ++ ++T + + EA FP Sbjct: 1003 EKMCFLTLEDLSGTMEAVVFP 1023 >gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40] gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40] Length = 1173 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 405/1055 (38%), Positives = 586/1055 (55%), Gaps = 48/1055 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+V + +SL++ + + ++ + A Q PAIA+TD +N F ++F + A AG+ Sbjct: 2 SSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI GC ++ D LL EGY+ + EL+S Y Q Sbjct: 62 KPICGCDFRMEPLDEESNPAI----------FTLLAMNPEGYRNITELISLSYQKGQKHG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL++ + G+I L+GG G + +A N AE L + ++ +R Y+ LQ Sbjct: 112 EPYIKFEWLEKF-SAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQ 170 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + + + LA ++LP+VATN+ FL ++ ++ H+ + + + R Sbjct: 171 RTGRENEERYLHKAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRRE 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T YLK EM +FSD+PEA+ENTVEIA+RCS +Q+ LP + E Sbjct: 231 RKYTDQQYLKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEGM---- 286 Query: 306 EEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E + + GLE RL + Q Y RL FEL++I +M F GYFLIV Sbjct: 287 TENSFFEKISYEGLERRLKTILKEDDPDYATKKQPYLNRLKFELDIIIQMGFPGYFLIVM 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK +NIPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+D Sbjct: 347 DFIQWAKDHNIPVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPDFDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI YV + YG + V+QIITFG++ AKA +RDV R Y D+L K+IP Sbjct: 407 FCMEKRDQVISYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ ++ RE D + +++ KLEG+ R+ HA G+VI L Sbjct: 467 DPGMTLTKAFEQEEP-LREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPTRLVD 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596 P+Y D VTQF+ +E+AGL+KFDFLGL+TLT++ ++ + + + Sbjct: 526 FAPLYCDESGSGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLGDPPL 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP DD +T+ LL T +FQLES GM+ + ++PD +E++IALV+L+RPGP+ Sbjct: 586 DISAIPLDDAKTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRPGPLQ 645 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + H + P+L+ T GVI+YQEQVMQIAQ L+GYSL Sbjct: 646 SGMVDDFINRKHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGYSLGG 705 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA+ GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 706 ADLLRRAMGKKKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSHSAAY 765 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K H+P F+AA+M+ +MD +K+ F ++ R + ++PP VN F Sbjct: 766 ALVSYQTAWLKAHFPAHFMAATMSSDMDKTDKVVTFIEECRNMKLNLLPPDVNRGEFQFT 825 Query: 830 V-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN + Y L AIKG+G I+ A D F L DFC+RVDSKK+N+R LE+LV Sbjct: 826 VDDDNNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALEALVR 885 Query: 888 AGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDK 937 +GALD G R + ++ K A+ N ++F Sbjct: 886 SGALDNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASERGDAY 945 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + R E+ LG Y +GHP+D Y L+ + + Sbjct: 946 SEFTHVRRWSLKERLNGERDTLGLYLTGHPIDEYDEELKHLVSNRIVNLKPDRAKQKV-- 1003 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A +VV+ + KT++G ++ +VT + E F Sbjct: 1004 AGLVVAFRVMKTKRGDKMAFVTLDDRTGRLETAVF 1038 >gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222] gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32] gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222] gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32] Length = 1159 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+++G + ++ K+A PA+A+TD NL ++F A Sbjct: 1 MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG Q + + ++ ++ +GY L L+S+ YL Sbjct: 60 CGVKPIIGADF----------LMQSPDFGDELTKLTVIATSNKGYNNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL E EGLI+L+G G I +A + ++ + +K F DR Y+ Sbjct: 110 VQHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D ++LA +LP+VATN +F+SE+ ++AH++ +A+ + Sbjct: 169 ELIRTGRTDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + Sbjct: 229 RRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL EL V+ M F GYFLI Sbjct: 284 EGLAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+ Sbjct: 404 IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + E D V L++ + LEG R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L DFC+R+D KK+N+RV+E L Sbjct: 823 FNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GALD G R ++ SL + K A + ++F + + + Sbjct: 883 ILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L K +++ T R ++ +A +V++ Sbjct: 943 KWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|291528373|emb|CBK93959.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale M104/1] Length = 1166 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 354/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL H+ YSLL+G+ + + ++ + AITD N++ +EF + A A I P Sbjct: 2 SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + ++LL GY L+++VS + + Sbjct: 62 VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ +GLI L+ +G I R A++ ++ FG D ++ LQ Sbjct: 119 RVDFETLERYH-DGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ Q+++++ E+ LV TN+ + E D EAHDVL+ + VS +DR R Sbjct: 178 HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++K+ +M ++F EA+ENT +IA RC+ L+ +P++ E D Sbjct: 238 YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L G + + +D+EL +I M F Y LIV D+I W Sbjct: 295 AEAFLTELCEKGFREKYIGCGEYSVDELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + ++ VGPGRGS AGS Y ITDIDP++++LLFERFLNP+R+SMPD D+DF Sbjct: 355 CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R I YVQ KYGH+ V QI+TFG++ A+ ++ VG+AL PY++ DRL K++P + Sbjct: 415 RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + F+ +D V +++++++LEGL H S HAAG+VI S VP+ Sbjct: 475 ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R P ++NM +E+ GL+K DFLGL+TLT+L+ S+ + RG+ VD+ I F+D Sbjct: 534 RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T + T T G+FQLES+GM+ ++ + P EDI+A +SLYRPGP+D I Y K Sbjct: 593 KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N ++I + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + + Sbjct: 653 NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 D +++ F+ G NGI + A +I++ + FA Y FNKSHAAAYA IS QTA Sbjct: 713 DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+K +YPVEF+AA MT +DN K ++ R I+++PP +N +F + + Y Sbjct: 773 WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895 + AIK +G I+E + +L DF R K+L N+R +E+L+ AGA D Sbjct: 833 GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953 +R Q+ +I Q +K+ ++F ++ S ++ ++ Sbjct: 893 GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHPL+ Y L+K + V ++ + M+ +K Sbjct: 953 YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGSVKIKDNAHVVIGGMIATKT 1012 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T+ + ++T + E FP Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040 >gi|114321000|ref|YP_742683.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1182 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 428/1071 (39%), Positives = 627/1071 (58%), Gaps = 58/1071 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VHS +SL +G L + ++D +A PA+AITD NLF ++F + A A Sbjct: 1 MSAQSGFVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G ++ ++ ++ + ++ LL +GY L L+S Y + Sbjct: 61 AGVKPIVGAEIRVEDEEAER----------DHSALTLLCRDLDGYAALSRLLSLSYQQGR 110 Query: 125 -GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + +WL+ EGLI+L+GG G + +A +++ AE + F D + Sbjct: 111 TVDDTPVVQRAWLEADH-EGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYF 169 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQR D V LA LP+VATN FL+ +DY+AH+V + + + Sbjct: 170 LELQRTGRPGDEDHLHAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDD 229 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP R T YL++ +EM ++FSDLPEALENTVEIARRCS L + +LP F E Sbjct: 230 PKRPRRYTNQQYLRSPAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGL 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARMKFSGYF 357 I E L +A+ GLE RL + +A+G + YRQRLD+EL +I +M F GYF Sbjct: 290 TI----EEFLHQEALRGLEQRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK+++IPVGPGRGSGAGS+ AYAL ITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 346 LIVADFIRWAKEHDIPVGPGRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RDEVI YV +YG E+V+QI T G++ A+A +RDVGR L Y VDR+ K Sbjct: 406 FDVDFCMEQRDEVIEYVARRYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAK 465 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P +P ++ +A + + D LL ++ KLEGL R+ HA G+VI Sbjct: 466 LVPFEPGMQLT-KAFELEPELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPT 524 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRG 593 L+ P+Y + + TQ++ +E+ GL+KFDFLGL+TLT++ ++ QRG Sbjct: 525 ALTDFSPLYCEPGGEGLATQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRG 584 Query: 594 VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD T+ LL T +FQLES GM++ ++ +QPD EDIIALV+L+RP Sbjct: 585 ETPLDIARIPLDDRATFDLLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRP 644 Query: 653 GPIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + + + +RK+G+ ++ H ++P+LK T GVI+YQEQVMQIAQ L+GY Sbjct: 645 GPLQSGMVDDFIDRKHGRAQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGY 704 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EM KQ+E F+ GA ++G+S+ A IF+L+ KFA YGFNKSH Sbjct: 705 SLGAADLLRRAMGKKKAAEMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSH 764 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQTAW+K HYP F+A+ ++ +MDN +K+ F ++ R+ + + PP VN Sbjct: 765 SAAYALLSYQTAWLKHHYPAPFMASVLSSDMDNTDKVVIFIEECREMGLTVRPPDVNRSG 824 Query: 826 VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F+ D + I Y L A+KGVG + I+E A PF L+D C+RVD +K+NRRVLE Sbjct: 825 YRFRAEDEQTIIYGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLE 884 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE------KGTFSDK 937 +L +G+LD +R + L A+ +N E++F Sbjct: 885 ALCRSGSLDSLIPNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPH 944 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------- 989 + + + + R E+ LG + +GHP+D Y+ L + + + +A Sbjct: 945 FSTPEQAEWDEHDRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKP 1004 Query: 990 -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G ++R+ +VVS + + T G R+ + + EA FP Sbjct: 1005 ENGRGRRRNGPSVRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFP 1055 >gi|160939913|ref|ZP_02087260.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613] gi|158437347|gb|EDP15112.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613] Length = 1161 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 375/1048 (35%), Positives = 573/1048 (54%), Gaps = 41/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++A+TD ++ ++F + A AGI+P Sbjct: 2 AFTHLHVHTEYSLLDGSCKIRELTARAKELGMDSMAVTDHGVMYGVIDFYKAAREAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + +VLL +GY+ L+++VS+ + +D Sbjct: 62 ILGCEVYVAPGSRFDR--ETVSGEDRYYHLVLLAENNKGYENLMKIVSKGF-VDGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ EG+I L+ +G + R + A + + +FG D ++ LQ Sbjct: 119 RVDYEVLRTYH-EGVIALSACLAGEVQRCLTRGMYEEAVRASEKYVDIFGKDNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D+ +++++ L LVATN+ + ED +AHD+L+ + V+ +DR R Sbjct: 178 HGLPDQKLVNQGLMRMSRDTGLKLVATNDIHYTFAEDEKAHDILLCIQTGKKVADEDRMR 237 Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y EM ++F PEA+ENT IA RC+ ++ LP++ E D Sbjct: 238 YEGGQYYCKSEEEMRALFPYAPEAIENTHMIAERCNVEIEFGVTKLPKYEVPEGFD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + G + R RLD+EL+VI M + YFLIV DFI + Sbjct: 294 SWSYLNHLCREGFKTRYPDDDGTLSS-------RLDYELDVIRSMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R Sbjct: 347 ARSQDIIVGPGRGSAAGSIVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++V QI+TFG+L AK +RDVGR L +PYS D + K+IP D Sbjct: 407 RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYSLCDTIAKMIPGDLGMT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + ++A D V L+++S++LEGL RH S HAAG+VIG R + + VP+ Sbjct: 467 LD-KALTMNPDLKKAYNEDEQVHYLIDMSRRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++Q ++ + + +D+ I FDD Sbjct: 526 RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGITIDIDHIDFDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + T T G+FQLES+GM+ ++ ++ + +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KKVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPKYLKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N + I P ++P+L T G I+YQEQVMQI + L+GY++ +D++RRAM KK M Sbjct: 645 NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 +K+++ F+ G NGI + A +I++ + FA Y FNKSHAAAYAV+SYQTA Sbjct: 705 EKERQNFVYGSQSEGVKGCVNNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIY 836 ++K +YP EF+AA MT MDNV K ++ R+ I ++PP +N F V + I Sbjct: 765 YLKYYYPREFMAALMTSVMDNVSKFSEYVLTCRRMMGIPVLPPDINEGESGFSVSGDAIR 824 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L+AIK VG I+ + PF S+EDF R+ K++N+R LE+ + +GALD Sbjct: 825 YGLSAIKSVGKPVTEVILAERERNGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953 +R Q + + + +K+ ++F A E+ +IT + Sbjct: 885 GTRRQKMAVAPTMLEEKAREKKSMFEGQLSLFDIAGEEDRNEFQITFPDVGEYSKDELLA 944 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005 E+ +LG Y SGHPLD Y+ R+ + G+ + +V K Sbjct: 945 FEKEILGVYISGHPLDDYEDTWRRNITATSAQFIVDEETDAAGVADGSRAVIGGLVAGKT 1004 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR + ++T + E FP Sbjct: 1005 VKTTRTNQLMAFITLEDLLGPVEVIVFP 1032 >gi|152992163|ref|YP_001357884.1| DNA polymerase III subunit alpha [Sulfurovum sp. NBC37-1] gi|151424024|dbj|BAF71527.1| DNA polymerase III, alpha subunit [Sulfurovum sp. NBC37-1] Length = 1188 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 390/1064 (36%), Positives = 605/1064 (56%), Gaps = 43/1064 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P F HL +H+ YSLL+GA + + K+ ++A+TD N+F ++F Sbjct: 1 MSEEPKLKPQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYN 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 GI+PIIG + + Q L G + L GY+ L+ L S+ Y Sbjct: 61 TMRKEGIKPIIGMEAYVHNQPEL-----GDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAY 115 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRL 171 + + RI + L+E EGL+ + G ++ + A++ Sbjct: 116 I-EGFYYYPRINWNLLKE-HAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIA 173 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 L +K++FGD Y+ L RH D++R Q++QL+ + +VATN++ + + +D +AH+ Sbjct: 174 LKYKEVFGDDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEA 233 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---- 285 M +A + + +R R + + Y+K+ +M +F+D+PEALE T EI +C+ + Sbjct: 234 FMCIAMNKLYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIVDKCNLEIKLGN 293 Query: 286 ----------QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335 + I + E E + + ++ ++ GL RL I Q Sbjct: 294 PTPPNFKFAREKAKEIGLKLPEPEVEYSLENDKILFIEESKRGLVERLK---IVPEEKHQ 350 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 +Y RL E+++I MKF GY LIV +F+ AK+ IPVGPGRGS AGS+ AYAL ITDI Sbjct: 351 EYWDRLQVEIDIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDI 410 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+ + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV KYG VAQIITFG L AK Sbjct: 411 DPMPYGLLFERFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAK 470 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 +RDV R L MPYS+ D + KLIP++ + + + +E +DP R E + Sbjct: 471 GVIRDVARVLDMPYSKADAMAKLIPDELGIDLKAS-YEKEPKIKELLESDPQAKRTWEYA 529 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 LEGL R+A THAAG+VI + L Q P+++ D TQ++ K++E LIKFDFLG Sbjct: 530 LALEGLNRNAGTHAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLG 589 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LKTLT+++++L + +R +++ +D + Y ++T TLG+FQ+ES+GM+ + Sbjct: 590 LKTLTVIEEALQLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKK 649 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++P EDIIA+++LYRPGP+++ + + RK+G+ +I P ++P+LK T GVI+YQ Sbjct: 650 LKPSSFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI Q + G+SL AD++RRAMGKKIKEEMDK K+ F GA++ G + A ++F+L Sbjct: 710 EQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKDEFAEGAAEKGFDRAKAADLFDL 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE +N +K+ K+ + +Q Sbjct: 770 IVKFAGYGFNKSHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQM 829 Query: 813 NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 I+++PP +N + F+ GD + + + AIKG G ++EA + F DF Sbjct: 830 GIKLLPPDINRSGLVFEATNIDGDEVVMFGMGAIKGAGDIAITSMLEAREEGAFRDFSDF 889 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 SR+DS K+N++V+ESL+ AGALD FGYSR +L +++I A+ + R ++F Sbjct: 890 VSRIDSSKVNKKVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEARKMAVGSLFG 949 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + S + L E E+ LGFY SGHPLD Y+ L + E Sbjct: 950 EGEEMTSVTLELSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLESINYTLSSEIDD 1009 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + S +K ++KG++ G + E F Sbjct: 1010 LADGSQALFIGKIESITEKISKKGNKFGIANIMDLHGNIELMLF 1053 >gi|318041279|ref|ZP_07973235.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0101] Length = 1178 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 390/1054 (37%), Positives = 584/1054 (55%), Gaps = 37/1054 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + K +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPNPPKK---ERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G + +A VA ++ +FGD Y+ Sbjct: 119 FSRACIDKPTLEQY-SEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGDDFYLE 177 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V+++ +PL+ATN++ +L+ D EAHD L+ + +V+ + Sbjct: 178 IQDHGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKLVTDEK 237 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K EM+++F+D PE + V R + ++ + + + + Sbjct: 238 RLRYTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMPRFPIP 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR + GL RL +Y +RL FEL V+ +M F YFL+V D Sbjct: 298 EGHTPVSYLREVSEQGLRARLQ--LPENEVFTPEYGERLTFELQVMEQMGFPTYFLVVWD 355 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 356 YIRFARENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 415 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 416 CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + D FRE DP V R ++++ ++EG + HAAG+VI P Sbjct: 476 RGKPAKLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L ++VP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K++D + Q G KVD Sbjct: 536 LDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLVEQSTGQKVD 594 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD TY LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 595 PDALPLDDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 654 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 655 GLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 714 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK K EM+K + F+ GA++ G+ IA +FE + FA+Y FNKSH+ AY ++YQ Sbjct: 715 AMGKKKKSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHSTAYGAVTYQ 774 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN +DF +RI Sbjct: 775 TAYLKAHYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPVGDRI 834 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++EA AD PF SL D C R+ LNRR LESL+ GALD Sbjct: 835 LFGLSAVRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESLIHCGALDAL 894 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------------KIT 939 +R QL+ LD I +A ++R + N+F G +D Sbjct: 895 EPQANRAQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAGSGDLSTAPK 954 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + + E+ ++GFY S HPL ++ + G + + Sbjct: 955 AAPVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQADKTRVSVVG 1014 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MV + TRKG R+ + + + EA FP Sbjct: 1015 MVAGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1048 >gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1155 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 413/1039 (39%), Positives = 607/1039 (58%), Gaps = 33/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YS+L+G + ++ ++ + PA+A+TD N+ ++F ++A A GI+PI Sbjct: 6 FVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + Q V + LL + +GY+ + L+S+ YL + Sbjct: 66 IGTDFWV----------QSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 I WL E +EG+I+L+GG G + + +AEK +++ F DR Y+ L R Sbjct: 116 IDQEWLAE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTA 174 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+ A H LP+VATN F+S +++EAH++ +A+ ++ RP+ Sbjct: 175 RVGEEDYIHRAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + Y+++ EM +F+D+P+A+ENTVEIA+RC+ + + + + Sbjct: 235 SEQQYMRSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGT-----YFLPDFPTGDMSIA 289 Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L + GLE RLA + +Y +RL EL VI +M F GYFLIV +FIQ Sbjct: 290 DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQ 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D Sbjct: 350 WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP P Sbjct: 410 RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A ++ R E D V L+++++ LEG+ R+A HA G+VI ++ P+ Sbjct: 470 TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D ++ +G+ +D+ IP D Sbjct: 529 YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDIDILAIPMD 588 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---- 660 D +++ LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + +V Sbjct: 589 DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648 Query: 661 ---YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + H + +L+ T G+I+YQEQVMQIAQ +SGYSL AD+LRRAM Sbjct: 649 DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM KQ+E F +GA N I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT Sbjct: 709 GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836 W+KTHYP EF+AA M+ +MDN +KI + ++ I ++PP VN F V + RI Sbjct: 769 WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIKGVG I+EA + + F L DFC++VD+K++N+RVLE LV+AGALD G Sbjct: 829 YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954 R ++ +L A K ++ ++F + K V + Sbjct: 889 PHRASIMATLPEAIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDG 948 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y +GHP++ Y +R + T + +V+ + ++G R Sbjct: 949 EKDTLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVGLVLGVRVMTNKRGRR 1008 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 G VT + + + FFP Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027 >gi|73749142|ref|YP_308381.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1] gi|289433116|ref|YP_003462989.1| DNA polymerase III subunit alpha [Dehalococcoides sp. GT] gi|73660858|emb|CAI83465.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1] gi|288946836|gb|ADC74533.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. GT] Length = 1170 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 379/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K +VLL +GY LI+L SR +L + R Sbjct: 62 LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +++ K+ EM + D+P+A+ENT +IA C+ L LP + K + Sbjct: 235 GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + GL V + RL +EL+VI +F+ YFL+ D I++ K Sbjct: 291 EYLADLCYEGLPVFYPDAGP-------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + G RGS A S+ Y L IT +DP+R+ L+FERFLN +R MPD D+DF DRR+ Sbjct: 344 EKGLYYG-VRGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP P + Sbjct: 403 EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + S +E D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ R Sbjct: 463 -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521 Query: 549 VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604 + + +TQ+ M+ I K GL+K DFLGL L +L K+ + + +D IP D Sbjct: 522 SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 582 DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 642 KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQK F+ GA KNG ++ IA +F L+ FA Y FNK+HA +YA+I+YQTA++K +YP Sbjct: 702 MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSL 839 VE++ A + D EK+ +AR I+++PP +N +F++ +I + L Sbjct: 762 VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIK VG I+ + + S+ED C R + LN+RV+ESLV AGALD G R Sbjct: 822 AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 L +L NI AQ +K + + ++F+ + + LE+ V + + + E Sbjct: 881 GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++G + S HP Y ++ + + + +A MV S + TR+G Sbjct: 940 KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + E +P Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017 >gi|313682047|ref|YP_004059785.1| DNA polymerase iii, alpha subunit [Sulfuricurvum kujiense DSM 16994] gi|313154907|gb|ADR33585.1| DNA polymerase III, alpha subunit [Sulfuricurvum kujiense DSM 16994] Length = 1179 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 383/1061 (36%), Positives = 608/1061 (57%), Gaps = 43/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F HL +H+ YSLL+GA ++ + ++ ++A++D N+F A++F Q+ Sbjct: 1 MSTIPPFTHLHLHTEYSLLDGANKISALAARVKELGMTSVAMSDHGNMFGAIDFYQQMRG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + I ++L G + L GY+ L+ L S+ Y+ + Sbjct: 61 AGLKPIIGMEAYIHNGEDL-----GDKTIKQRFHVCLFAKNEAGYKNLMYLSSQAYI-NG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTF 174 RI L+E +EG+I + G ++ N A++ L + Sbjct: 115 FYYFPRINKQLLRE-NSEGIICTSACLQGEVNWHLNTNSERNVKNGALGYDEAKRIALEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++FGD Y+ + RH D+ + QV++++ + L+ATN++ + +D + H+ M Sbjct: 174 REIFGDDFYMEIMRHGIADQLFIDEQVIRISQETNIKLIATNDTHYTYADDAQYHEAFMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + + R R + + Y+K+ +M +F+D+PEAL NT EI +C L++ P Sbjct: 234 IGMNKLYDDPKRMRHSVHEFYIKSPEQMARLFADIPEALYNTQEIVDKCQLELKLGNPTP 293 Query: 293 PRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 P F ++ E ++ GLE RL +YR+RL+FE+ V Sbjct: 294 PNFKFTTEYAREEGLEIAEDSEYFIHRCRIGLEERLIHVPQT---RHTEYRERLEFEMEV 350 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +MKF GY LIV DF++ AK+ I VGPGRGS AGS+ AYAL ITDIDP+++ LLFERF Sbjct: 351 INQMKFPGYMLIVWDFVREAKRMGIAVGPGRGSAAGSLVAYALEITDIDPMKYDLLFERF 410 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DF Q RR E+I YV KYG E+VAQIITFGSL AK +RDV R L+M Sbjct: 411 LNPERVSMPDIDMDFMQARRGEIIDYVVQKYGREQVAQIITFGSLLAKGVIRDVARVLEM 470 Query: 468 PYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKL 518 P SQ D + KLIP++ + A + + +E D R+ E S+KL Sbjct: 471 PLSQADMMAKLIPDELGITLNGKTKGGEFKPGAFQKEPKIQELIENDAQAMRVWEFSKKL 530 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HAAG+VI + PL + P+Y+ + VTQ+++ ++E LIKFDFLGLKT Sbjct: 531 EGLKRNAGMHAAGVVISNEPLWKKTPIYKPSGEETFVTQYSLNYLEDIDLIKFDFLGLKT 590 Query: 579 LTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++ + +R K + I +D + Y ++ + T+G+FQ+ESSGM+ + ++P Sbjct: 591 LDVIDNAIKLIKKRYNKEVNWHTIDENDPKVYEIIQSGDTIGMFQIESSGMQDLNKRLKP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 ED+IA+++LYRPGP+++ + + RK+G++ I P ++P+LK T GVI+YQEQV Sbjct: 651 SSFEDLIAVLALYRPGPMESGMLDDFIERKHGRQAISYTFPSMEPILKPTYGVIVYQEQV 710 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQI Q + G+SL AD++RRAMGKK EEM K + F GA+ G+ A +F+L+ K Sbjct: 711 MQIVQTVGGFSLGGADIVRRAMGKKKIEEMQKYNKEFSEGAANQGLDYKKASELFDLIEK 770 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSH+AAYA++++QTAW+KT+YP EF+AA +T E DN +K+ K+ +A++ I Sbjct: 771 FAGYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEKDNTDKVVKYIDEAKRMKIF 830 Query: 816 IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871 + P +N ++F ++I + L AIKGVG I+EA ++ F ++DF +R Sbjct: 831 LGAPDINHSQLEFSAITKDDQDQILFGLGAIKGVGEAAVESILEARSEGEFKDIQDFINR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 ++ +K+N++V+E ++ AG LD FGYSR LL+ ++ + + A+ + + ++F ++ Sbjct: 891 IEPQKVNKKVIECIIKAGGLDHFGYSRRALLEQVETLVETAKKGSSLKKDAQFSLFGDDE 950 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + ++ L+ + + E+ LGFY SGHPLD Y+ + + E Sbjct: 951 EVTAVELNLKNMDEFDLKTLLDFEKDTLGFYVSGHPLDNYRDQIDAINYTLSSEIENIAD 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G++ V +K ++KGS G V+ + E F Sbjct: 1011 GSSAIFIGKVEEITKKMSKKGSMFGLVSLMDFHGNIEVMLF 1051 >gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069] gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069] Length = 1161 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 408/1042 (39%), Positives = 601/1042 (57%), Gaps = 29/1042 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P F+HL++H+ YS+++ + + ++ Q PAIA+TD N+ ++F ++ +AGI Sbjct: 2 TPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G L I Q + L GY L ++SR YL +Q + Sbjct: 62 KPIAGADLLI----------QNPNDEDEHFRVTALCMNNTGYLNLKYVISRAYLKNQHRG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + WL E EGLI+L+GG G + +A + A L + F DR Y+ LQ Sbjct: 112 LPLVKKEWLPEY-AEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQ 170 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + QV+ LA P+VATN+ F+ +ED++AH+ + + V++ RP Sbjct: 171 RTGRPQENEYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRP 230 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL++ EMV +F D+PEALEN+VEIA+RC+ +++ LP F E I + Sbjct: 231 REYSEQQYLRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTIAQ 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ++ L+ + A + Y +RL EL+VI M F GYFLIVADFIQ Sbjct: 291 YFEKVSKDGLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVADFIQ 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + Sbjct: 351 WSKNNGVPVGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCME 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV +YG V+QIITFG++ AKA +RDVGR PY VD+L KLIP + Sbjct: 411 GRDRVIDYVAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPFEVGM 470 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A + D V L ++++KLEG+ R+A HA G+VI L + P+ Sbjct: 471 TLE-KAFEQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEEFAPL 529 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLSL 600 Y D VTQF+ +E AGL+KFDFLGL+TLT++ ++ + +D++ Sbjct: 530 YCDETGHNIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPIDITA 589 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D + + LL T +FQLES GM+ ++ ++P+ EDIIALV+L+RPGP+ + +V Sbjct: 590 IDTEDQQVFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQSGMV 649 Query: 661 -------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + H + +L+ T G+I+YQEQVMQIAQ+L+GY+L AD+L Sbjct: 650 DNFINRKHGREIVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADIL 709 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM+KQ+ F GA KN + +A+ IF+L+ KFA YGFNKSH+AAYA+++ Sbjct: 710 RRAMGKKKPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVA 769 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832 YQTAW+KTH+P F+AA M+ +MDN +K+ + +DA N+ I PP VN F V + Sbjct: 770 YQTAWLKTHHPAAFMAAVMSSDMDNTDKVVTYVEDAANSNLTITPPDVNKGQYRFSVDEE 829 Query: 833 NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 RI Y + AIKGVG I+ E A+ P+ L DFCSRVD KK NRR LE+L+ AGA+ Sbjct: 830 GRIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALIRAGAM 889 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950 D G +R L+ SLD K A+ K++ +++F T +++ + Sbjct: 890 DLIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKPWTDEQ 949 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LG Y +GHP+D Y P +++M I T RGN+ R+ ++V + T+ Sbjct: 950 VLQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIVGMRVMNTK 1009 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G ++ +T + + + + Sbjct: 1010 RGDKMAILTLDDKSGRCDVTVY 1031 >gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5] gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 1151 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 522/1036 (50%), Positives = 706/1036 (68%), Gaps = 15/1036 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD QPA+A+TDT+N+F ALEFS K Sbjct: 1 MSNA-GFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPI+G +L ID D + P+ IVLL + GY+ L+ L SR +L Sbjct: 60 SGIQPIVGLELGIDFGDQDPNSRNTAVAAPS--RIVLLATRERGYRSLMRLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q I WL + TE +I LTGG GPI A + R + FGDRLYV Sbjct: 118 VNQPPHIKFDWL-DGETEDVIALTGGPDGPISLAMLT-DPALGRLRCERLAQAFGDRLYV 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH ++R E+ ++ +AY LPLVATN F + +D+EAHD L+ +A ++++ Sbjct: 176 ELQRHNTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAET 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299 DR ++TPDH K R+EM +F+DLPEAL +TVEIA+RC++ P + Sbjct: 236 DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVND 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ E ELR +A GL R+ +++G +DYR+RL FEL+VI RMK++GYFLI Sbjct: 296 AEEAAAAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD Sbjct: 356 VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 416 IDFCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA PVS QAI + + + R DP V R +I+QKLEGL RHASTHAAGIVIGDRP Sbjct: 476 PQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + +DL Sbjct: 536 LSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDL 595 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + + +D +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 596 ATLGIEDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMG Sbjct: 656 PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EM+KQ+ F+ GA++NG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 716 KKIRAEMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEF+AASMTL+++N +K+ +F +A++ I++ PSVN F+VG+N IYY+ Sbjct: 776 MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYA 835 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LA +KGVG + I+EA DKPF SL DF +RV+ + +N+RV+ESL AGA DC +R Sbjct: 836 LAGLKGVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNR 895 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ D I Q + T+ ++F + I L + + R E Sbjct: 896 ARVFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APSIVLPQVEPWLPAERLRREYDA 953 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y L+++ ++ + + A G ++AA VVS+ +++T+ G+++G Sbjct: 954 IGFFLSGHPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1014 IMGLSDPTGHFEAVLF 1029 >gi|257413195|ref|ZP_04742281.2| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82] gi|257204357|gb|EEV02642.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82] Length = 1162 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 359/1054 (34%), Positives = 579/1054 (54%), Gaps = 44/1054 (4%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 Q + SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A Sbjct: 5 QSM----SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AAGI+P++GC++ + +VLL +GYQ L+++VS+ + + Sbjct: 61 RAAGIKPVLGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNQGYQNLMKIVSKGF-V 117 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + R+ + L+ EG+I L+ +G + R + A++ ++K FG Sbjct: 118 EGYYYKPRVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGN 176 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ LQ H D+ + +++++ + LVATN+ + ED E HD+L+ + + Sbjct: 177 FFLELQDHGIPDQKTVNAGLMRMSEETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKL 236 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S ++R R +++K+ EM ++F +A++NT +IA RC+ ++ LP F E Sbjct: 237 SDENRMRYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPE 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D L GL R ++ +LD+EL+VI +M + YFLI Sbjct: 297 GYD----SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD D Sbjct: 346 VWDFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDID 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC +RR EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K I Sbjct: 406 IDFCYERRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNI 465 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 PN+ + I + R +D +V RL++++++LEGL RH S HAAG+VI + + Sbjct: 466 PNELNITIDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAM 524 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDL 598 + VP+ R TQF M IE+ GL+K DFLGL+TLT++ ++ G+K+D+ Sbjct: 525 DEYVPLSRSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDV 583 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I +DD + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Sbjct: 584 DNIDYDDKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFI 643 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM Sbjct: 644 PKYIKGKNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMS 703 Query: 719 KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 KK + +D +++ F+ G NGIS+ A I++ + FA Y FNKSHAAAYA Sbjct: 704 KKKQYVIDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYA 763 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V++YQTA++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F Sbjct: 764 VVAYQTAYLKYYYPVEFMAALMTSVVDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLA 823 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIK +G I+ A+ + +L DF SRV +++N+R +E+L+ AG Sbjct: 824 TKDGIRYGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAG 883 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947 A D +R Q+L + + +KN ++F E+ + ++ Sbjct: 884 ACDGLDGNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLFSEEEKKAYEVRFPNVEEYT 943 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAA 999 ++ E+ VLG Y SGHPL+ Y+ RK + + ++ + Sbjct: 944 KEIKLGFEKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGG 1003 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ K K T++ + ++T + E FP Sbjct: 1004 IITEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1037 >gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1160 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 411/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ K+AA PA AITD N+ ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + + + + + +L + GYQ L L+S Y Sbjct: 60 AGIKPIIGADVFV----------KSELLGDELSHLTILAANNTGYQNLTLLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + + + Q+A + + +++ F D Y+ Sbjct: 110 GADGPVIDRDWLVEY-REGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA ELP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSAQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTEDFLVAKSKEGLEERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDSEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGED 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA + GI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A F L D C+R D+KKLNRR+LE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVA 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + V + E+ LG Y +GHP+ Y + + G ++ T RG +VV+ Sbjct: 943 PWPAQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMTTKRGNRIGVCTLDDRSGRLEVMLF 1031 >gi|147669904|ref|YP_001214722.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp. BAV1] gi|146270852|gb|ABQ17844.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp. BAV1] Length = 1170 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 378/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G ++ ++ + A+AITD + F ++A AGI+PI Sbjct: 2 FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + + D T K +VLL +GY LI+L SR +L + R Sbjct: 62 LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL+ L+ SG + R N A + L +KK F + Y+ +QRH Sbjct: 117 IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D S ++ +A ++PLVATN++ +L +ED HD+L+ + + +VS + R ++ Sbjct: 175 MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234 Query: 250 PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +++ K+ EM + D+P+A+ENT +IA C+ L LP + K + Sbjct: 235 GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + GL V + RL +EL+VI +F+ YFL+ D I++ K Sbjct: 291 EYLADLCYEGLPVFYPDAGP-------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + G RGS A S+ Y L IT +DP+++ L+FERFLN +R MPD D+DF DRR+ Sbjct: 344 EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP P + Sbjct: 403 EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + S +E D V L++ ++K+EGL RHASTHAAG+VI PL+ VP+ R Sbjct: 463 -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521 Query: 549 VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604 + + +TQ+ M+ I K GL+K DFLGL L +L K+ + + +D IP D Sbjct: 522 SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +T+ LL T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I + Sbjct: 582 DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G E I HP ++P+L+ET GVI+YQEQV+ IAQ SGY+L +AD+LR+AMGKKI Sbjct: 642 KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQK F+ GA KNG ++ IA +F L+ FA Y FNK+HA +YA+I+YQTA++K +YP Sbjct: 702 MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSL 839 VE++ A + D EK+ +AR I+++PP +N +F++ +I + L Sbjct: 762 VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIK VG I+ + + S+ED C R + LN+RV+ESLV AGALD G R Sbjct: 822 AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 L +L NI AQ +K + + ++F+ + + LE+ V + + + E Sbjct: 881 GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++G + S HP Y ++ + + + +A MV S + TR+G Sbjct: 940 KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + E +P Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017 >gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1159 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 406/1048 (38%), Positives = 614/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS +S+++G + I+ K + PA+AITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + +L + EGY+ L L+S Y Sbjct: 60 AGMKPIIGADFKV----------QSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL EGLI+L+GG +G + +A + ++ + + +K F D Y+ Sbjct: 110 VQHLPVIDKEWLIN-HREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + V+LA +LP+VATN+ L+ + ++AH++ +A+ + Sbjct: 169 ELVRTGRADEEAYLHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ + Sbjct: 229 NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL V+ +M F GYFLI Sbjct: 284 GDMSIEDFLVMKSKEGLEERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + ++ AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEAEPQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V+++ I DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVNIAAIAMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + N++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDDEGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G +R +L +LD+ K A + ++F + + Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAAPEEVEHKYANIP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y P L+ +++ T R +A +V++ Sbjct: 943 ESPDKVWLEGERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|291537379|emb|CBL10491.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia intestinalis M50/1] Length = 1156 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 358/1047 (34%), Positives = 577/1047 (55%), Gaps = 40/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + + ++ + AITD ++ ++F + A AAGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + +VLL +GYQ L+++VS+ + ++ Sbjct: 62 ILGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNQGYQNLMKIVSKGF-VEGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L+ EG+I L+ +G + R + A++ ++K FG ++ LQ Sbjct: 119 RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +++++ + LVATN+ + ED E HD+L+ + +S ++R R Sbjct: 178 HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +++K+ EM ++F +A+ENT +IA RC+ ++ LP F E D Sbjct: 238 YEGGQYFVKSEEEMRALFPYAAQAIENTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL R ++ +LD+EL+VI +M + YFLIV DFI + Sbjct: 294 SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + IPVGPGRGS AGS+ +Y IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R Sbjct: 347 ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG + V QI+TFG+L A+ +RDVGR + +PY+ D + K IPN+ Sbjct: 407 RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + I + R +D +V RL++++++LEGL RH S HAAG+VI + + + VP+ Sbjct: 467 IDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 R TQF M IE+ GL+K DFLGL+TLT++ ++ G+K+D+ I ++D Sbjct: 526 RSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + + T G+FQLES+GM+ ++ ++P +ED+IA +SLYRPGP+D I Y K Sbjct: 585 KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N E + + ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK + + Sbjct: 645 NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 D +++ F+ G NGIS+ A I++ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YPVEF+AA MT +DN K+ ++ RQ I+++ P +N F + I Y Sbjct: 765 YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 + AIK +G I+ A+ + +L DF SRV +++N+R +E+L+ AGA D Sbjct: 825 GMYAIKSIGRQVIDIILAEREANGKYITLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954 +R Q+L + + +KN ++F E+ + ++ ++ Sbjct: 885 NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006 E+ VLG Y SGHPL+ Y+ RK + + ++ + ++ K Sbjct: 945 EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K T++ + ++T + E FP Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031 >gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1] gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58] gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192] gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1] gi|14194674|sp|Q9HXZ1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1] gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa] gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192] gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58] Length = 1173 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + + + + + LL A+GY+ L EL+SR + Q + Sbjct: 64 ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFLIV DF Sbjct: 289 DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 409 MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 469 GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 528 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 648 MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 708 MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 768 VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ AG Sbjct: 828 DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ + A+ ++ + H ++F Sbjct: 888 ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947 Query: 935 SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + K R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 948 EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506] Length = 1151 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 578/1029 (56%), Positives = 748/1029 (72%), Gaps = 11/1029 (1%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL+ HS++SLLEGAL L+ I+ AD PA+ I DTNNLF ALEFS+KA +G+QP Sbjct: 9 SFIHLRSHSAFSLLEGALKLDQIIKFALADGAPAVGIADTNNLFGALEFSEKAAKSGLQP 68 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQLD+D +D N + + +VL+ S+ GY L+E+VS+ YL + Sbjct: 69 IIGCQLDVDFEDG---ENDREKAALSPAPVVLIASSDIGYANLVEIVSKAYLGHEANVRP 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + SWL ++ EG+I LTGG SGPI A +AE RL K +GDRLYV LQR Sbjct: 126 HVKASWLDDL-AEGVIALTGGPSGPIGLAIAAERRPIAEARLDRLKTAYGDRLYVELQRQ 184 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 GY R E+ ++LAY LP+VATN F EDY+AHD L+AVA + +VS +DR R++ Sbjct: 185 HGYSRRLEAGTLELAYGCNLPIVATNEPYFYCAEDYDAHDALLAVASNRLVSHEDRRRLS 244 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 DH LKN++EM +F+DLPEALENT+EIARRC+F +V PILPRF + D E Sbjct: 245 RDHCLKNQNEMAELFADLPEALENTIEIARRCNFRPKVRQPILPRFAGADADPADAERAE 304 Query: 310 --ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ELR +A GL+ R+ + IA G+ ++YR+RLDFEL +I RM+F GYFLIVADFI+WA Sbjct: 305 VAELRRQAFEGLDRRMEKLGIADGHTVEEYRERLDFELTIIERMQFPGYFLIVADFIKWA 364 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDRR Sbjct: 365 KDHGIPVGPGRGSGAGSLVAYALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQDRR 424 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y VD+LCKL+P +PA+PV Sbjct: 425 EEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGHVDKLCKLVPANPANPV 484 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + QA+ ++ R +EAR + VDRL+ IS KLEGLYRHASTHAAGIVIGDRPL +LVPMY Sbjct: 485 TLAQALEEEPRLKEAREKEEIVDRLISISLKLEGLYRHASTHAAGIVIGDRPLQKLVPMY 544 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 RD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT LQ ++ ++ + K+DLS IP DD Sbjct: 545 RDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLQTAVSYVELNKQTKIDLSAIPLDD 604 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +LT T+G+FQLES GMR+AL GM+PD EDIIALV+LYRPGP++NI YN RK Sbjct: 605 KPTYDMLTRGETVGVFQLESVGMRKALIGMRPDVFEDIIALVALYRPGPMENIPTYNARK 664 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G+E+ IH I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+ EM Sbjct: 665 HGEEEPDFIHEKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADMLRRAMGKKIRAEM 724 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DKQ+ RF+ GA + GI K A IF+LLAKFA+YGFNKSHAAAYA+++YQTA++K +YP Sbjct: 725 DKQRVRFVDGAVERGIQKKQADMIFDLLAKFANYGFNKSHAAAYALVAYQTAYLKANYPA 784 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 EFLAASMTL+ N EK+ +F DAR+ I+++PPSV T F+V N+I+Y+LAAIKGV Sbjct: 785 EFLAASMTLDAGNTEKLNEFRLDARRLGIEVVPPSVQTSFRKFEVSGNKIFYALAAIKGV 844 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G HI+E DKPF SLEDFC RVD K +N+R E L+ AGA DCFG+ R L+ ++ Sbjct: 845 GEHAVDHIVEKRGDKPFKSLEDFCGRVDPKIINKRTFEFLIAAGAFDCFGHERAVLMSNV 904 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + YA + ++RT+ +IF + + + L + +S + E + +GF+ S Sbjct: 905 ERMMGYAARIAESRTSGQADIFGAFS-SEPEPLRLGPAPLWTASEKLLREFQAIGFHLSA 963 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPLD Y+ L+++ ++ + ++VA ++ + +RLA V S+Q++KTR G +IG + S+ Sbjct: 964 HPLDEYRSTLKRLRVQSHADAVAAVKRGASAVRLAGTVTSRQERKTRSGGKIGIIQMSDA 1023 Query: 1024 AKEYEANFF 1032 + +YE F Sbjct: 1024 SAQYEVVLF 1032 >gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719] gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719] Length = 1173 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 420/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + + + + + LL A+GY+ L EL+SR + Q + Sbjct: 64 ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V LA PLVATN+ F+ ++D+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFLIV DF Sbjct: 289 DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 409 MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 469 GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 528 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 648 MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 708 MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 768 VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ AG Sbjct: 828 DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ + A+ ++ + H ++F Sbjct: 888 ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947 Query: 935 SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + K R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 948 EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009] gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009] Length = 1151 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 529/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K Sbjct: 1 MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI+G +L ID D + G P IVLL + +GY+ L+ L SR +L Sbjct: 60 YGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q + L WL E T+G++ LTGG GPI A +A +R ++ FGDRLYV Sbjct: 118 VNQVPHVKLEWL-EGETDGVVALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ Sbjct: 176 ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299 DR + TPDH K R+EM +F+DLPEAL +TVEIA+RC++ P + Sbjct: 236 DRIQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSD 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E ELR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLI Sbjct: 296 AAEAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD Sbjct: 356 VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 416 IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA P++ QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRP Sbjct: 476 PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL Sbjct: 536 LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 596 HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG Sbjct: 656 PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 716 KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N I+Y+ Sbjct: 776 MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYA 835 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LA +KGVG + I+EA D+PF SL DF +RV+ + +N+RV+E L AGA DC +R Sbjct: 836 LAGLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNR 895 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ D I Q + T+ ++F + I L + + R E Sbjct: 896 ARVFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDA 953 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 954 IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1014 IIGLSDPTGHFEAVLF 1029 >gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565] gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565] Length = 1159 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 425/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A Sbjct: 1 MAD-PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G + Q + LL +GYQ + L+SR Y Sbjct: 60 KGIKPIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I SWL E +G+I+L+GG G + + + Q+ E+ + ++ F D Y+ Sbjct: 110 VQGRPVIDKSWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V +A LP+VATN +FL+ +D++AH++ +A+ + K Sbjct: 169 ELLRTGRPDEEVYLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ + Sbjct: 229 RRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVAKSKEGLEERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L Y VDR+ KLI Sbjct: 404 VDFCMDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E D V L++++++LEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD +++ LL T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPIDDKKSFDLLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G E I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGNEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + A+KGVG I+ A D PF L DFC+RVD KKLN+RV+E L Sbjct: 823 FSVNEDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G R L+ +L+ + A+ K + ++F D K Sbjct: 883 ILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 943 HWPDKVWLEGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030 >gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638] gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638] Length = 1160 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 422/1049 (40%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + I +L GYQ L L+SR Y Sbjct: 60 AGLKPIIGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGL++++GG G + ++ ++ + E+ + +++ F DR Y+ Sbjct: 110 GAAGPWIDRDWLAEL-NEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F++ ED++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +F+D+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRNYSTQQYMRSEDEMCELFADIPEALENSVEIARRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE L + Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTEDFLVLKSKEGLEDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDESGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINAGMYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL K A K ++F + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGEALKAADQHAKAEAIGQADMFGVLADEPEQIEQSYANCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 E E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEHTVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2] Length = 1173 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + + + + + LL A+GY+ L EL+SR + Q + Sbjct: 64 ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 114 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 173 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFLIV DF Sbjct: 289 DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 409 MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 469 GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 528 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVNI 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 648 MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 708 MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 768 VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ AG Sbjct: 828 DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ + A+ ++ + H ++F Sbjct: 888 ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947 Query: 935 SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + K R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 948 EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045 >gi|229826056|ref|ZP_04452125.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC 49176] gi|229789798|gb|EEP25912.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC 49176] Length = 1160 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 355/1051 (33%), Positives = 571/1051 (54%), Gaps = 41/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ +SLL+G+ ++ ++ ++ A AITD ++ +EF + A GI+P Sbjct: 2 SFTHLHLHTGFSLLDGSSKISELVKRVKELGMDACAITDHGVMYGVIEFYKACKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + ++LL G++ L+++VSR + + Sbjct: 62 IIGCEVYVAPNSRFEK--GTEKSAKRYNHLILLAENDTGHKNLMKIVSRGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 R+ L+E EG+I + +G + + A+ L + +FG+ ++ LQ Sbjct: 119 RVDYELLREYH-EGIIASSACLAGIVPTKLREGDYEGAKAEALRLRDVFGENNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++++ +PL+ATN+ +L +ED EAHDVL+ + +V+ DR + Sbjct: 178 HGLPEQKFVNQGLMRISAETGIPLIATNDCHYLYKEDAEAHDVLICIQTQKIVTDDDRMK 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 Y+K+ EM IF +PEA++NT +IA RC+ ++ LP + E Sbjct: 238 YEGGQFYVKSPEEMKEIFHYIPEAIKNTEKIAERCNVEIEFGKYHLPEYPVPEG----YT 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G + R G + R RL +E++ I+ M F YFLIV D+I + Sbjct: 294 ALSYLNKLCEDGFKSRYEG---ITGDEENELRARLKYEIDTISNMGFVDYFLIVWDYINF 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+NNI VGPGRGS AGS+ AY L IT +DP++++LLFERFLNP+R++MPD DIDFC R Sbjct: 351 AKENNIAVGPGRGSAAGSIVAYCLGITGVDPIKYNLLFERFLNPERVTMPDIDIDFCVLR 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG E+V QI+TFG++ AK +RDVGRAL +PYS D++ K+IPN+ Sbjct: 411 RQEVIDYVTEKYGREKVVQIVTFGTMAAKMVIRDVGRALDLPYSFCDKVAKMIPNELKMN 470 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ D+ + + +L+++S++LEGL RH S HAAG+VI R + VP+ Sbjct: 471 ID-KALKDNPDLMQLYEENEEAKKLIDLSRRLEGLPRHTSIHAAGVVISKREVDSYVPIS 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLI 601 TQ+ M+ IE+ GL+K DFLGL+ LT+++K+++ + + D+ I Sbjct: 530 TSS-DGAVTTQYTMETIEQLGLLKMDFLGLRNLTVIEKAVELVNRNRRKSGQEDFDIEKI 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +D Y +++ T G+FQLES GM ++ ++PD IEDIIA +SLYRPGP++ I Y Sbjct: 589 DMEDENIYLMISEGKTEGVFQLESPGMTSFMKKLRPDNIEDIIAGISLYRPGPMEFIDDY 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 N K +I + P+LK T G I+YQEQVMQI + L+GYS ++D+LRRAM KK Sbjct: 649 INGKRNSTEIEYDCEELKPILKSTYGCIVYQEQVMQIVRELAGYSYGQSDLLRRAMSKKK 708 Query: 722 KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 M ++++ F I G G+S+ +A I++ + FA Y FN+SHAAAYA I+ Sbjct: 709 DSVMRQERQNFVYGDETKGIPGCVAKGVSEQVANKIYDKMIDFAKYAFNRSHAAAYAFIT 768 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++K +YP E++AA +T M N K+ ++ ++ I I+PP VN +F Sbjct: 769 YQTAYLKYYYPKEYMAALLTSVMSNTGKVSEYILSSKNMGIAILPPDVNEGEGNFTAVKE 828 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y ++AIKG+G I++ + + SL D R+ LN++ LE+L+ +GALD Sbjct: 829 GIRYGMSAIKGLGENVTETIVKDREERGEYKSLSDLVERLSG-ILNKKGLEALIKSGALD 887 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950 +R + + + + + ++ ++F A ++ + ++ + + Sbjct: 888 GLSGTRREKMAVYEQVLDSVSHEKHSKMAGQLSLFDIAPQEDLSALEVKMPVLGEFDMET 947 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002 + E+ ++G Y SGHPL Y+ LR + + G N L + Sbjct: 948 KLAFEKEMIGIYLSGHPLYDYQDFLRGICNTNSMDFAYDEEEGRVNVRSGMNYVLGGIAT 1007 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K TR R+ ++T + E FP Sbjct: 1008 GVNIKLTRNNQRMAFITLEDLVGNIEIIVFP 1038 >gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1] gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1] Length = 1160 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 425/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G + Q + + +L + GYQ L L+SR Y Sbjct: 60 AGLKPIVGADFHV----------QNDLLGDEMSQLTVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q I WL E+ EGLI+L+GG G + ++ ++ + E+ +++ F DR ++ Sbjct: 110 GAQGPWIDRDWLVEL-NEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSSQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + + Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMTTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDESGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170] Length = 1170 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 493/1042 (47%), Positives = 683/1042 (65%), Gaps = 22/1042 (2%) Query: 8 SPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 SP+ FVHL+VH++ S+ EGA+ + ++ A PA+AITD+ NLF ALE S AC Sbjct: 15 SPANGFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDM 74 Query: 66 GIQPIIGCQLDIDMQDNLKMT--NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G+QPIIGCQ+ + ++ + P ++VLL A GY L+++VSR ++ Sbjct: 75 GVQPIIGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEG 134 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G ++ ++ L+ + E +GLI+LTGG GP+ R A L K+ FGDR+Y Sbjct: 135 DGSEAPQVRLADI-EALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVY 193 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V +QRH D R E+ ++ LAY + LVATN + +EAHDVL+ + TV+ Sbjct: 194 VEIQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGD 253 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + R R+TP+HY K +EM ++F+DLPEA++NT+ IA+RC+ + + PILP + Sbjct: 254 ETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKG-- 311 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSG 355 + E L A GL+ RL + +G A+ YR+RL +EL+VI +M F G Sbjct: 312 --RTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPG 369 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFIQWAK +IPVGPGRGSGAGS A+ALTITD+DPLRFSLLFERFLNP+R+SM Sbjct: 370 YFLIVADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSM 429 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQDRR+EVIRYVQ +YG+ERVAQIITFG LQA+A LR VGR LQMP VD++ Sbjct: 430 PDFDIDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKI 489 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 CK++PN+PA PV+ +AI + + R+ + D V RLL+I KLEGLY HASTHAAG+VI Sbjct: 490 CKMVPNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVI 549 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPL LV +YRD SD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++ +A+RG+ Sbjct: 550 GDRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRGI 609 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VDL +P DD +Y +L T G+FQLES+GMR L M+PD +EDI+A+V+LYRPGP Sbjct: 610 TVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGP 669 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +DNI Y RK G+E++V +H ++P+LKET G++IYQEQVMQ AQ+++GYSL AD+LR Sbjct: 670 MDNIPSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLLR 729 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKKIK EMD Q+ F+ GA K G S+ A +F+ +AKFA YGFNKSHAAAY +++Y Sbjct: 730 RAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAY 789 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YPVEF+AA+MT +M N +K+ F + R+ +I ++PP VN F V D Sbjct: 790 QTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDGA 849 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y+L A+K VG ++ A PF L DF R+D K +N+R+LE+L+ AGALD Sbjct: 850 VRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGALDS 909 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R +LL + D + ++AQ ++R + ++F T + + + Sbjct: 910 LDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTITETLA 969 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTR 1010 +E+ +GFY S HPLD+Y L ++ + E +RG ++LA +++++ + Sbjct: 970 HERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARKERIGK 1029 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 GSR +V S+ E F Sbjct: 1030 SGSRYAFVELSDATGSCETMVF 1051 >gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016] gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016] Length = 1185 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 16 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + + + + + LL A+GY+ L EL+SR + Q + Sbjct: 76 ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W++E EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 126 IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 185 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 244 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 245 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300 Query: 308 ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFLIV DF Sbjct: 301 DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 361 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 421 MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 481 GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 540 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 600 DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 660 MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 720 MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 780 VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ AG Sbjct: 840 DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ + A+ ++ + H ++F Sbjct: 900 ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959 Query: 935 SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + K R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 960 EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057 >gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46] gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46] Length = 1168 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 512/1046 (48%), Positives = 700/1046 (66%), Gaps = 29/1046 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HSSYSLLEGAL L +++ A D+QPA+A+TDTNNLF ALEFS+KA GIQPI Sbjct: 9 FVHLHTHSSYSLLEGALKLGDLVKAAAGDRQPALALTDTNNLFGALEFSEKAAGLGIQPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL + + + +P +VLL GY L++L S Y ++ R Sbjct: 69 AGIQLSVLFE---APEPGQRGGPAPLPHLVLLAKDETGYGHLLKLASLAYFDGPLGEAPR 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L++ GLI LTGG GP+D + A RL + FG D LYV +QRH Sbjct: 126 VPVEALRDCAP-GLIALTGGPGGPLDSCLRAARPEHAAGRLARLVEAFGEDHLYVEIQRH 184 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E++++ LA H LPLVATN F EDYEAHD L+A+A +VS + R R+ Sbjct: 185 GLPDERAVEAELIGLADRHGLPLVATNEPFFARPEDYEAHDALLAIAEGRLVSDEKRRRL 244 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD------- 301 TP H K R+ M +F DLP+AL +VEIA RC++ ++ PILP F Sbjct: 245 TPRHDFKTRAAMAELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGVSGGPAARDAAQ 304 Query: 302 --------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 D +E EL+ +A AGL RLA+ A+G QDYR RL +E+ +I +MKF Sbjct: 305 AGSPAPAGDPALDEAGELKRQAEAGLARRLAEAGPAEGLSEQDYRDRLAYEIGIITKMKF 364 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+ Sbjct: 365 PGYFLIVSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERV 424 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFC R+ VI YVQ++YG +VAQIITFG+L A+ LRDVGR L+MPY QVD Sbjct: 425 SMPDFDIDFCVVGRERVIEYVQSRYGEAQVAQIITFGTLLARGVLRDVGRVLEMPYGQVD 484 Query: 474 RLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 +L KL+P +PA+PV+ +QAI + R + A +P V RL+EI++KLEGL+RHASTHAAG+ Sbjct: 485 KLTKLVPQNPANPVTLVQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGV 544 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VIGDRPL LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L QR Sbjct: 545 VIGDRPLEALVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLEQR 604 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 G+ +DL+ +P DD TY L +G+FQ+ES+GMR+AL M D ED+IALV+LYRP Sbjct: 605 GITLDLAALPLDDERTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRP 664 Query: 653 GPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 GP+ NI VY RK G++ + HP ++P+L ET G+I+YQEQVM++A++L+GYSL Sbjct: 665 GPMANIPVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLG 724 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKKIK EMD Q++RF+ GA + G+ K A IF+LLAKFADYGFNKSHAAA Sbjct: 725 DADLLRRAMGKKIKAEMDAQRDRFLKGAMERGLDKAKANEIFDLLAKFADYGFNKSHAAA 784 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTA++K +YPVEFLAASM+ ++D+ +K+ + QDA++ I++ PPSVN V F Sbjct: 785 YALITYQTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLAIKVEPPSVNRSGVTF 844 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +V D I Y+LAAIKGVG I++A D+PF L DF R++ + +N+R LESLV A Sbjct: 845 EVHDGTIRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGA 904 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD R + +++ + + AQ + T ++F + + + + + Sbjct: 905 GALDEIEPDRARAFAAIEPMLRLAQGALEAETVGMTDMFGGVAAA-TVALRIPPYDPWPA 963 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQ 1006 + R + E +GF+ SGHPLD Y +L+K+ ++ + E + GN++ R+AA V+ + + Sbjct: 964 ADRLKKEYEAVGFFLSGHPLDEYGELLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSE 1023 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++T+ G+++G V S+ +EA F Sbjct: 1024 RRTKTGNKLGIVNLSDQTGHFEAIVF 1049 >gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 1151 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 537/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + AD+QPA+A+TDT+N+F LEFS K Sbjct: 1 MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPI+G +L ID D + G P IVLL + +GY+ L+ L SR +L Sbjct: 60 SGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q I L WL + T+G+I LTGG GPI A +A +R ++ FGDRLYV Sbjct: 118 VNQVPHIKLDWL-DGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E ++ LAY LPLVATN F S EDYEAHD L+ +A ++++ Sbjct: 176 ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300 DR + TPDH K R+EM +F+DLPEAL +TVEIA+RC++ PILP F Sbjct: 236 DRVQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGAGVSD 295 Query: 301 -DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E ELR +A GL RL+ ++ G +DY +RL FEL+VI RMK++GYFLI Sbjct: 296 AVEAAAAEAAELRRQAELGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD Sbjct: 356 VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 416 IDFCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA P++ QAI + + + AR DP V R +I+QKLEGL RHASTHAAGIVIGDRP Sbjct: 476 PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L ++ L QR + VDL Sbjct: 536 LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 +P DD +Y +L +G+FQ+ES+GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 596 HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG Sbjct: 656 PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EMDKQ+ F+ GA KNG++K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 716 KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEFLAASMTLE+ N +K+ +F +A++ I++ PSVN F+VG N IYY+ Sbjct: 776 MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIYYA 835 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L +KGVG + I+EA DKPF SL DF +RV+ + +NRRV+E L AGA DC +R Sbjct: 836 LGGLKGVGLQAVQQIVEARGDKPFASLADFAARVNPRAINRRVVECLAAAGAFDCLNSNR 895 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + D I Q + T+ ++F I L + S R E Sbjct: 896 AAVFAGADAIVAACQRNHEAATSGQNDMFGGLSDV--PSIILPQLDAWLPSERLRREYDA 953 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 954 IGFFLSGHPLDDYATALKRLRVQSWNEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1014 IIGLSDPTGHFEAVLF 1029 >gi|117618855|ref|YP_855729.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1159 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 428/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A Sbjct: 1 MAE-PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G + Q + LL +GYQ + L+SR Y Sbjct: 60 KGVKPIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E +G+I+L+GG G + + + Q+ E+ L ++ F D Y+ Sbjct: 110 VQGRPVIDKAWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V +A LP+VATN +FL+ +D++AH++ +A+ + K Sbjct: 169 ELLRTGRPDEEVYLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ + Sbjct: 229 RRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFGS+ AKA +RDVGR L Y VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVSEMYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E D V L++++++LEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPIDDKRSFDLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 643 LQSGMVDNFIERKHGKEAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + A+KGVG I+EA D PF L DFC+RVD KKLN+RV+E L Sbjct: 823 FSVNEDGHIVYGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G R L+ +L+ + A+ K + ++F D K Sbjct: 883 ILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 943 HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030 >gi|224534774|ref|ZP_03675346.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S] gi|224514022|gb|EEF84344.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S] Length = 1161 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 390/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSKFIHLHVHSDYSLLDGAAKISDIVSKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAVAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDEFKITFPGPILPDYQIPIE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D L + GL+ + R +EL VI RM F GYFLIV Sbjct: 310 FD---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELGVIIRMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV N+YG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNRYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P VSL+ + +D+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 EGP--KVSLKEVLNDNSLKEYFTSKPIYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFRIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDTKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRSTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAVEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFVRRVDDKVINKKFLESAIKSGLFDSLDKNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLGSQESIQQSFNYQVFEEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSTVQFSGILNSVKIIQTKRNNSKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGSIDIVVF 1033 >gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103] gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103] Length = 1160 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + + I +L + GYQ L L+SR Y Sbjct: 60 AGVKPIIGADFNVA----------SELMGDELTQITVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + L +++ F DR ++ Sbjct: 110 GIAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN F++EED++AH++ +A+ + Sbjct: 169 ELVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLP 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ +L++ K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVT 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V+ + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|295093096|emb|CBK82187.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus sp. ART55/1] Length = 1194 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 361/1062 (33%), Positives = 567/1062 (53%), Gaps = 49/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+GA ++ ++ + ++AITD ++ +EF + GI+PI Sbjct: 3 FTHLHVHTGYSLLDGAAKIDGLVRRAKELGYDSLAITDHGVMYGVIEFYETCLREGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + + +VLL GY L ++V+R + + R Sbjct: 63 LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAENDLGYHNLSKIVTRGFT-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + L++ EG+I L+ +G + A++ + ++ +FG + ++ +Q H Sbjct: 120 VDMEVLEKYH-EGIIALSACLAGEVATKLRKGDYDGAKETAIRYRNIFGEENYFLEMQDH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + +++L+ +P+V TN+S ++ ED+EAHDVL+ + + V ++R R Sbjct: 179 GIPEQATVNAGIMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNHKVQDENRMRY 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 YLK++ EM +F EALENT +IA RC+ + +PRF E Sbjct: 239 DGGQFYLKSKEEMAELFPYALEALENTHKIAERCNVNIVFGEQKVPRFDVPEG----YTA 294 Query: 308 ENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + G+E G +A+G H + RQR+D+EL+VI M F YFLIV D Sbjct: 295 EEYLDHLVYEGMEKKYGLTYEESGKMAEGTHGYEVRQRIDYELSVIKSMGFVDYFLIVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +AK I VGPGRGS GSV AY L IT I+PL+++LLFERFLNP+R+SMPD DIDF Sbjct: 355 FIHFAKSQGIAVGPGRGSAVGSVVAYCLDITTIEPLQYNLLFERFLNPERVSMPDIDIDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RR EVI Y KYG E V QII + ++ A+ +RDVGRA+ +PY+ D L K IP + Sbjct: 415 CYIRRQEVIDYCVRKYGEECVTQIIAYQTMGARNVIRDVGRAMDLPYAVCDSLAKAIPAE 474 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + A+ FR+ + +L++I++KLEGL R+A HAAG+VIG + + Sbjct: 475 KDMTID-IALKTSKDFRDMYEGSDEIKKLVDIARKLEGLPRNAGMHAAGVVIGREAIEEY 533 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601 P+ VTQF +E G++K DFLGL+T T++Q ++ + Q +D+ I Sbjct: 534 APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVVQDTVKLVKQTTGKDIDIDNI 592 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +DD L+ T G+FQLES GMR + ++P ++D+IA V+L+RPGP+ I Y Sbjct: 593 DYDDPNILGLMGQGKTEGMFQLESEGMRNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K +E + P ++ +L+ T G IIYQEQVMQI L+GY+L +D++RRAM KK Sbjct: 653 IRGKENRELVHYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712 Query: 722 KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 EEM+K++ F+ G NGIS+T+A IF+ + KFA+Y FNKSH+ AYAV++ Sbjct: 713 PEEMEKERHNFVYGNKELNVPGCVANGISETVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 QTA++K +YPVEF+AA M+ +DN K+ K+ +Q ++++PP +N F + + Sbjct: 773 AQTAYLKYYYPVEFMAALMSSVIDNNGKVAKYISVCKQMGVEVLPPDINEGVAKFSISNG 832 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y L+ IK VG I + PF L +F +R+ SK N++ +E+L+ +GA D Sbjct: 833 KIRYGLSGIKSVGGAVVDRIEAERTKNGPFKDLRNFLTRMPSKDTNKKTVEALILSGAFD 892 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV 950 G +R Q++ +L I + A K+R + ++F F + + Sbjct: 893 DMGANRKQMMMALPAIAEEAARERKSRESGQMSLFDLMGDDFVQSNLVPYPDVEEYSDQE 952 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-------------------VATIR 991 + E+ VLG Y SGHPL Y ++++ + Sbjct: 953 KLALEKSVLGVYISGHPLGKYIELMQRTCTAQATDFVVDTEDDDEMSRDQGDGDGQKLQD 1012 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ K T+ + +VT + + E FP Sbjct: 1013 NAMYVIGGLISRVTVKLTKNNQNMAYVTIEDLVGQVEVIVFP 1054 >gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1160 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 426/1049 (40%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + Q + +L + GYQ L L+SR Y Sbjct: 60 AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ Sbjct: 110 GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEG 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|148381587|ref|YP_001256127.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 3502] gi|148291071|emb|CAL81534.1| DNA polymerase III, subunit alpha [Clostridium botulinum A str. ATCC 3502] Length = 1194 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 379/1082 (35%), Positives = 595/1082 (54%), Gaps = 61/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL +H+ YSLL+GA +NNI+ +IAITD ++ ++F + A Sbjct: 1 MSDKK-FTHLHLHTGYSLLDGAGKINNIIASAKELGMDSIAITDHGAMYGCVDFYKAAKN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++ IIGC++ I + M+ + P + +VLLV GY+ LI++VS+ + D Sbjct: 60 AGLKAIIGCEVYIVPKS---MSIKNSDPNNKIYHLVLLVKNEIGYKNLIKIVSKASI-DG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R +L++ +EGLI L+ G I + + A++ L +K +F D Y+ Sbjct: 116 FYYKPRTDHQFLKD-HSEGLIALSACLGGEIQSNLLNENKEKAKEIALFYKSIFKDGFYL 174 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H +R ++LA ++PLVATN+ ++ ++D + HD+L+ + V+++ Sbjct: 175 ELQYHGNDAERKVNDMNIRLARELKIPLVATNDVHYIEQKDSKFHDILLCIQTGKTVNKE 234 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R + YLK+ EM +FS +PEAL+NT +IA +C+F H LP+F+ E D Sbjct: 235 NRLRYPSDQFYLKSADEMWEMFSHVPEALKNTEKIAEQCNFHYDFHTSKLPKFLLPEGTD 294 Query: 303 IQKEEE-----------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + R+ + + A+ Y RL +EL+VI M Sbjct: 295 PFEYMKKFCFKGLIKRCDLFRDLLTKSFNINEIIALGKENEEAKIYIDRLQYELSVIDHM 354 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + YFLIV+DFI++A + IP GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+ Sbjct: 355 GYVDYFLIVSDFIKFANEKKIPTGPGRGSGAGSLVAYTLGITKIDPIKYGLIFERFLNPE 414 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD D DFC +RR E+I YV KYG E V+QIITFG++ A+ +RDVGRA+ Y + Sbjct: 415 RISMPDIDSDFCYERRGEIIDYVVEKYGKENVSQIITFGTMAARVCIRDVGRAMNYSYVE 474 Query: 472 VDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VD++ K+IP P +++ +A + + + V L+++S LEGL RH+STHAA Sbjct: 475 VDKIAKMIPIVPGIIITIDKALALNPELKNEYENNLRVKELIDVSMNLEGLPRHSSTHAA 534 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GI+I P+ VP+ ++ V+QF+M +++ G +K DFLGLKTLT+L+ ++D + Sbjct: 535 GIIISSSPIGDYVPLQKN--EHNIVSQFDMTTLDELGFLKMDFLGLKTLTVLKDAVDMIM 592 Query: 591 Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 Q V +DL I +D E Y ++ T+GIFQLES+GM ++ ++PD +EDIIA +SL Sbjct: 593 QNHNVDIDLDKIDINDKEVYKMIGEGKTIGIFQLESTGMTSFMKELKPDSLEDIIAGISL 652 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGPID I Y K +KI + P ++P+LK T G ++YQEQVM+I + L+GYS+ Sbjct: 653 YRPGPIDEIPKYIENKKNPDKITYLTPQLEPILKITYGCLVYQEQVMEIVRKLAGYSMGR 712 Query: 710 ADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFA 757 +D++RRAM KK + M+++++ FI G +N +S+ I +F+ + FA Sbjct: 713 SDLVRRAMSKKKHKVMEEERKNFIYGIVKEDGEIEVPGCIRNEVSEKIGNELFDSMMDFA 772 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHA AYA+++YQTA++ +YP E++AA + M + K+ + A IQ++ Sbjct: 773 SYAFNKSHAVAYALVAYQTAYLMKYYPAEYIAAKLNSVMGDNGKVAYYINYAESLGIQVL 832 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876 PP +N F V DN I + L AIK VG A+ I+++ + F SL DF S++D Sbjct: 833 PPDINESFSKFIVEDNTIRFGLDAIKNVGIGAAKIIVKSRKKNGNFKSLIDFASKIDLTT 892 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFS 935 +N+R +ESL+ AGA DCF R +LL + + K + ++F A Sbjct: 893 INKRAIESLIKAGAFDCFKVFRSRLLAVYEKVLDSISNQRKRNIDGQVSLFNADNTIVNI 952 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-------- 987 I + + E+ +LG Y +GHPLD Y L+ E+ + Sbjct: 953 PIIKYPEIKEFDKKYLLAMEKEMLGIYITGHPLDEYAQSLKIQTSIRIEKILCSHNKVLN 1012 Query: 988 ----------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 G + + ++ +K TR + + ++ + + E Sbjct: 1013 DDSIIEISSDNNIIRGDINDGERVVIGGIITKVSRKITRNNTIMAFLKLEDLSGIIEVIV 1072 Query: 1032 FP 1033 FP Sbjct: 1073 FP 1074 >gi|296121520|ref|YP_003629298.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776] gi|296013860|gb|ADG67099.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776] Length = 1176 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 385/1046 (36%), Positives = 576/1046 (55%), Gaps = 31/1046 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S F HL HS +SLL+GA L+ ++ K+ A ++AITD NL+ AL+F A Sbjct: 1 MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ PI+G + I L+ + + + LL G+Q L++L S+ ++ + Sbjct: 61 AGVNPILGMEAYIAPGSRLEKSGASRM-KEASYHLTLLAMNRVGFQNLVKLSSKAFI-EG 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L E +EGLI L+G ++G + + + AEK + + FGDR ++ Sbjct: 119 FYYKPRIDKEIL-EAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFM 177 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q R + V LA LPLVATN++ +L+ ED DVL+ V + S Sbjct: 178 EIQNAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSDP 237 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R ++ + +++ EM + F +A+ + EIA R L + P F E Sbjct: 238 KRMKMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPE--- 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 K + + LR GL+ R + I Q++R RL FEL+VI +M + YFLIV D Sbjct: 295 -NKRDIDYLRELCEEGLKWRYGEENI-----RQEHRDRLAFELSVIEKMGYPSYFLIVWD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+++A + IP RGS G++ AY L ++ + P+++ LLFERFL+P R PD DIDF Sbjct: 349 FVRFAIEKGIP-ASARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDIDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C+DRR +VI Y + KYG V+QI TFG+L+AKAA+RDVGR L +P +VD + KL+P + Sbjct: 408 CRDRRQDVIDYTKAKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPEE 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ S + A DP + L + + +LEGL R A THAAG+V+ DRP+S Sbjct: 468 LGIELK-EALEKSSDLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISDY 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ VTQ+ +EKAGL+K DFLGL+ LT+L K++ +A RGV +D + Sbjct: 527 VPLQTISGKTDLVTQWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPVKL 586 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 P DD ETY LL T GIFQLES GMR L M+PD DIIA +LYRPGP++ ++ Sbjct: 587 PLDDKETYALLQRGETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGMVM 646 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K+ + + +HP++D +L ET GV++YQEQVM+I L G L ++ +A+ K Sbjct: 647 TYVEVKHKRAPLPRVHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAISK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + K K +F+ G+ KNG+ + A +FE++ KFA YGFNKSH+ AYA ++YQTA++ Sbjct: 707 KKLETIAKYKAQFVEGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTAFL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838 K HYP EF+AA ++ EM++ ++I + D R+ NI+I+PP +N V+F V G ++ + Sbjct: 767 KAHYPAEFMAALLSCEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVAFG 826 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKGVG T + I+EA PF S+ D C RVD+K L++ LE LV AGALD Sbjct: 827 LGAIKGVGEATTQAIVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSISPK 886 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRF 952 R ++ + AQ ++K++ +N+F ++ TL + + Sbjct: 887 RASQFACIERAVQAAQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHREKL 946 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK- 1011 E+ VLGFY + HPL + + + G + L MV S ++ T+K Sbjct: 947 AYEREVLGFYLTSHPLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTKKP 1006 Query: 1012 ---G-SRIGWVTFSEPAKEYEANFFP 1033 G SR +P +P Sbjct: 1007 SRNGHSRYVNFDLEDPTGVVRCIMWP 1032 >gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1] gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1] Length = 1160 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A + Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+IG ++ + + + +L S+ GYQ L L+SR Y Sbjct: 60 AGIKPVIGADFNVA----------SELMGDELTQLTVLASSDTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ ++ + + L +++ F DR Y+ Sbjct: 110 GVDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN F++ ED++AH++ +A+ + Sbjct: 169 ELIRTGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMTTEDYLVVKSREGLEERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + + AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNEAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V+ + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup] Length = 1164 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 588/1038 (56%), Positives = 754/1038 (72%), Gaps = 8/1038 (0%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + P F+HL+VHS+YSLLEGAL + I+ + +D PA+AITDTNNLF ALEFSQ Sbjct: 10 MQENKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLFGALEFSQ 69 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119 A G+QPIIGCQL +D D + K P+ SIVLL ++ GY L+ LVSR Sbjct: 70 HCLAHGVQPIIGCQLTVDFCDENDHSRLAKWRNPSDFCSIVLLAASEIGYAHLVRLVSRA 129 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 YL + I +WL +EG+I+LTGG GPI+ + + A +RL+ KK F Sbjct: 130 YLDKRDTDPPHIKANWLSA-HSEGIIVLTGGKGGPINLSLAEEKKEHAVERLIYLKKSFA 188 Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 DRLYV LQRH YDR E+ +++LAY HE+PLVATN + FL E YEAHD LMAV+ + Sbjct: 189 DRLYVELQRHGSYDRRVEADLIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 248 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK- 298 VS DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC + PILPRFIE+ Sbjct: 249 VSNPDRKRVTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 308 Query: 299 -ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ + E++EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYF Sbjct: 309 ANSENTLEVEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEISVITRMQFSGYF 368 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD Sbjct: 369 LIVSDFIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 428 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+RR+EVI+YVQ KYG +VAQIITFG LQA+A LRDVGR L++PY QVD L K Sbjct: 429 FDIDFCQERREEVIQYVQKKYGRNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 488 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V AI D+ +F E + DP V R L+I+ +LEGLYRHASTHAAGIVIGD Sbjct: 489 LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 548 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+ Sbjct: 549 RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKI 608 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DLS IP +D TY ++ T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++ Sbjct: 609 DLSNIPLNDETTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 668 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA Sbjct: 669 NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 728 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI EM KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA++SYQT Sbjct: 729 MGKKIHAEMQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 788 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+MK +YPVEFLAASMT +M N +K+ F ++A + I+++ PS+ T F+VGDN IY Sbjct: 789 AYMKANYPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDNCIY 848 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 YSLAAIKGVG T HI+ DK F LEDFC+RVD + +N+R +ESLV AGA DCF Sbjct: 849 YSLAAIKGVGETVVDHIVACRGDKIFKDLEDFCARVDPRIVNKRAMESLVCAGAFDCFNI 908 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R LL +L + A + + ++ +IF G I L + + + + E Sbjct: 909 AREVLLANLGTLHARALRILDDNSSGQVDIFGMAGGLKEPLI-LSQTTSWLPAEKLYREF 967 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014 + +GFYFS HPL+ Y+ IL K I+ + ++G RLA VV+K +KT+ G + Sbjct: 968 QAIGFYFSAHPLEEYQAILDKKRIQTWVNFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1027 Query: 1015 IGWVTFSEPAKEYEANFF 1032 +G + FS+ + +YEA F Sbjct: 1028 MGIIHFSDTSGQYEAVLF 1045 >gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC 19061] Length = 1160 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 418/1049 (39%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K+A PA AITD NL ++F A + Sbjct: 1 MTE-PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ + +L EGYQ L L+S Y Sbjct: 60 AGIKPIIGADFYVE----------SDLLGDEYAHLTVLACNNEGYQNLTLLISESYQKGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL++ + GLI+L+GG G + + + + E+ L +++ F + Y+ Sbjct: 110 GAVGPTIKREWLEKY-SAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRLDEENYLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +FSD+PEAL+N+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQYLRSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y RLD ELNVI +M F GYFLI Sbjct: 284 GDMSTEDFLVEKSKQGLEERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + IA + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFIA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K DL Sbjct: 523 TDFAPIYCDPEGQNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDQKSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F +G+ K G++ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKQPEEMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+RVD+KK+NRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + Sbjct: 883 IMSGAFDRLGPHRAALMSSLEDAFKAADQHAKAEATGQTDMFGVLAEKPEQVEHAYASTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + ++ T RG + +V++ Sbjct: 943 KWPDQVVLDGERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKILTTKRGNRIGISTLDDRSGRLEIMLF 1031 >gi|218962013|ref|YP_001741788.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas acidaminovorans] gi|167730670|emb|CAO81582.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas acidaminovorans] Length = 1146 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 376/1033 (36%), Positives = 579/1033 (56%), Gaps = 31/1033 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA ++ ++ PA+AITD NLF A++F + A AGI+P Sbjct: 2 SFVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + I D T + + ++LL +GY+ L++L S Y+ Sbjct: 62 ILGIEAYIINGDLESETGKNEIR----YHLILLAQNEQGYKNLMKLSSYSYIK-GFYYKP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L++ +EGLI L+ G I + + Q AE+ L +K LF + Y+ +Q H Sbjct: 117 RISKTLLKQY-SEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDH 175 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++ LA E+P+V TN+ +L++ DYEAHD+L+ + ++ DR Sbjct: 176 NLEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHY 235 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T Y K+ EM +F D+PEA NT++IA L +LP K Sbjct: 236 GTNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNIETP---PEFKTM 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR +++ + +QR+++EL VI RM F+GYFLIV D I A Sbjct: 293 GEYLRFLCYENAKIKYPD-------LNETIKQRIEYELEVIDRMGFNGYFLIVKDIIDNA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +K ++PVGPGRGSGAGS+ AY L IT IDPL++ L+FERFLNPDR+SMPD DIDFC R Sbjct: 346 RKQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI Y+ +YG E V QIITF +L AK+ ++DV R L +P S+ + + K I + Sbjct: 406 SKVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQ---GNKT 462 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A F ++ + + S+ LEGL R S H AG+VI L+ VP+ Sbjct: 463 LDEAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLAC 522 Query: 548 DVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + + QF KW+ L+K D LGLK LTL+QK++D + Q + + +D++ I Sbjct: 523 STQKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQDIDIDINHISL 582 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 +D + Y++L T G+FQ ES GMR+ L ++P+ IED+IA+V+LYRPGP+ I Y Sbjct: 583 EDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQFIDSYIA 642 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+EK+V HPL++ LKET GV IYQEQVMQIA+ + G++ EAD LR+AMGKK + Sbjct: 643 RKHGREKVVYDHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGKKNSD 702 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +E+F GA + + I++ +FA+Y FNKSHA YA+++YQTA++K +Y Sbjct: 703 LMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYLKAYY 762 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF+AA ++LE D + K + ++ I+I+PP++N +F+V + + L AIK Sbjct: 763 PVEFMAALLSLEDDPTKIPGKI-EVCKKMGIKIIPPNINRSDSEFRVHGKEVLFGLRAIK 821 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 +G R I+E + P+ S+ +FC+R+DS +N+ +LESL+ +GA+D +R Q Sbjct: 822 NLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGTRAQKW 881 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVL 959 ++ +++ +K+R IF D L + + E E+ VL Sbjct: 882 NVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEKEKEVL 941 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY SGHPL Y+ +++ + T + +A ++ + +KK KG+ I +V Sbjct: 942 GFYLSGHPLFEYRSLIKHLTNANSST-GKTKNNGELLIAGIINNISKKKDNKGNPIAFVE 1000 Query: 1020 FSEPAKEYEANFF 1032 F + ++E F Sbjct: 1001 FEDLCGKFEVPLF 1013 >gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342] gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22] gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55] gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342] gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22] gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55] Length = 1160 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 426/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + Q + +L + GYQ L L+SR Y Sbjct: 60 AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ Sbjct: 110 GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEG 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|212636262|ref|YP_002312787.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3] gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3] Length = 1156 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 409/1047 (39%), Positives = 593/1047 (56%), Gaps = 38/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL K++ PA+A+TD N+ ++F Sbjct: 1 MSD-PLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + + + SI + EGY L L+S YL Sbjct: 60 AGIKPIIGTEFWVQVP-----------GVDELCSITAIAMNNEGYSSLTLLISDAYLRGH 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + +GLI+L+GG G + RA ++ + + ++ F DR Y+ Sbjct: 109 IDDRAVIDHEWLAKY-NDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V+LA +LP+VATN +F E +EAH++ +A++ ++ Sbjct: 168 ELLRTGRPDEERYLHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y K+ EM +F D+PEA++NTVEIA+RC+ ++++ Sbjct: 228 RRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYF-----LPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL + +Y +RLD EL VI M F GYFLI Sbjct: 283 GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR PY VDR+ K+I Sbjct: 403 VDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ V L+++ + LEG+ R+A HA G+VI + Sbjct: 463 PAEPGMTL-AKAFEVEPALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L Sbjct: 522 TDFSPIYCDSEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGED 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +V + I D + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 582 RVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 642 LQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADMLRRAMGKKKPEEMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 762 AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFR 821 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ I Y + A+KGVG I+EA D PF L DFC+R+D KKLNRRV+E L+ Sbjct: 822 FTVDDDLNIVYGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLI 881 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSV 945 AGALD G R L+ +L + A K ++F DK + Sbjct: 882 CAGALDNLGPHRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTP 941 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 942 WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATR 1001 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+++G VT + + E F Sbjct: 1002 VMMTKRGAKMGLVTLDDKSARLEVMLF 1028 >gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355] Length = 1160 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K AA PAIAITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + + I +L + GYQ L L+SR Y Sbjct: 60 AGVKPIIGADFNVA----------SELMGDELTQITVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + L +++ F DR ++ Sbjct: 110 GIAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN F++EED++AH++ +A+ + Sbjct: 169 ELVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLP 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I++A + F L D C+R D+KK+NRRV+E L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ +L++ K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVT 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V+ + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 1159 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 428/1054 (40%), Positives = 604/1054 (57%), Gaps = 57/1054 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YSL++G + L ++ +A PA+A+TD NLF ++F + A A G Sbjct: 6 HDPGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPIIG L + + +V + LL GY+ L L+SR + Q K Sbjct: 66 VQPIIGADLLV----------RDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEK 115 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGP------IDRAFFFNSSQVAEKRLLTFKKLFGD 180 RI WL EGLI L+GG G + R + L + K F Sbjct: 116 GIPRIDAEWLDS-AAEGLIALSGGIDGLFVSGSGVARVLTHDD-------LAPWLKRFPG 167 Query: 181 RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R Y+ L R R + Q + A ELP+VATN+ FL ED+EAH+ + + T Sbjct: 168 RFYLELTRTERPGEEAWIEQALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTT 227 Query: 240 VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + RP R + YL EM FSD+PEAL N+V IARRCS L + +LP F Sbjct: 228 LDDPSRPRRYSEHQYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVP 287 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E E+ LR + GLE RL + A +Y +RL EL+VI +M F GYFL Sbjct: 288 EG----YTVEDHLRETSAKGLEARLERFQFA---ERSEYEERLKLELDVICQMGFPGYFL 340 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SMPDF Sbjct: 341 IVADFIQWAKDNGIPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDF 400 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD+VI YV +YG ++V+QIIT G++ AKA +RD GR L Y VDR+ KL Sbjct: 401 DVDFCMEKRDDVIDYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKL 460 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +A+A+ + D V ++++++KLEGL R+A HA G+VI Sbjct: 461 IPFELGMTLD-KALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSA 519 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L+ P+Y + VT F+ +E GL+KFDFLGL+TLT++ +++ + + + + Sbjct: 520 LTDFSPLYCEDDGGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPETRI 579 Query: 599 SLI--PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L P DD +T+ LL T +FQLES GM+ + +QPD EDIIALV+LYRPGP+ Sbjct: 580 DLDAVPLDDPDTFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQ 639 Query: 657 NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + + +RK+G+ ++ HP ++P+L+ T GVI+YQEQVMQIAQ+L+ Y+L AD+LR Sbjct: 640 SGMVDDFIDRKHGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLR 699 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA G+ + A IF+L+ KFA YGFNKSH+AAYA+++Y Sbjct: 700 RAMGKKKPEEMAKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAY 759 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTAW+K HYP F+AA ++ +MDN +K+ ++ R ++++PP VN F D Sbjct: 760 QTAWLKAHYPAPFMAAVLSADMDNTDKVVGLIEECRNMGLEVLPPDVNQSDYRFTCRDAG 819 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + Y L AIKGVG + +++A A D PF L D C RVD KLN+RVLE+LV AGALD Sbjct: 820 TVVYGLGAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALD 879 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 G +R LL + A+ E+N + ++F + E R Sbjct: 880 AIGANRATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPES--ETLPEMEDDDRL 937 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--------------NIRLA 998 E+ LG Y +GHP++ Y+ L+++ + E A + +R+A Sbjct: 938 RGEKETLGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIA 997 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV + + T+ G R+G T + + E F Sbjct: 998 GLVVGVRVRNTQNG-RMGIATLDDRSGRAEIVLF 1030 >gi|296269404|ref|YP_003652036.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833] gi|296092191|gb|ADG88143.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833] Length = 1174 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 359/1056 (33%), Positives = 532/1056 (50%), Gaps = 39/1056 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L + + PAIAITD NL + +F ++A AAGI+P Sbjct: 4 SFVHLHVHTEYSMLDGAARLKQMFKLVGELGMPAIAITDHGNLHGSYDFYKQATAAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + + + + + G LI+L SR Sbjct: 64 IIGIEAYVAPESRFNKQPVLWGEPHQRGDDVSAGGFYTHLTIWARNKTGLHNLIKLSSRA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y ++ R+ L E EGL+ TG SG + A K ++++FG Sbjct: 124 YTEGFVRKWARMDAELLAE-HAEGLMASTGCPSGEVQTRLRLGQYDEALKAAAKYQEIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + Y+ L H +R +V++ T LP V TN+S + + D HD L+ + Sbjct: 183 KENFYLELMDHGLDIERRVRDDLVRIGRTLGLPPVVTNDSHYTYQSDAAGHDALLCIQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ DR R Y E + E + + Sbjct: 243 KQLNDPDRFRFEGTEYYIKTPEEMRALDSSDLWQEGCRNTLAIAEKVDPTGFFEYKNLMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 K EE R K G+ R G ++R+ ++ E++VI +M F YF Sbjct: 303 TFPIPEGKTEEEYFREKVWEGMRRRFPDGVD------DEHRELVEKEISVIVQMGFPSYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+R+SMPD Sbjct: 357 LVVADFIMWAKNNGIRVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF + RR +VIRYV K+G ++VA I TFG+++AKAA++D R L PY+ DR+ K Sbjct: 417 IDVDFDERRRADVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAARVLGYPYALGDRITK 476 Query: 478 LIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 P + + R+ DP V +++ + LEGL R H Sbjct: 477 AFPPAVMGKDIPLSGIFDPEHPRYHEAGELRKMYEEDPDVKAAIDLGRGLEGLIRQTGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ PL+ +P+ R +TQF+ E GL+K DFLGL+ LT++ L Sbjct: 537 AAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCEALGLLKMDFLGLRNLTIIDDCLKM 596 Query: 589 -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 A G K+DL +P DD +TY LL TLGIFQL+ GMR L M+PD EDI A + Sbjct: 597 IEANTGEKIDLLELPLDDAKTYELLARGDTLGIFQLDGGGMRSLLRLMKPDNFEDISAAL 656 Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQL 701 +LYRPGP+ ++ + Y RKNG+++I IHP ++ LK+ T G+I+YQEQVM IAQ Sbjct: 657 ALYRPGPMGANSHINYALRKNGQQEITPIHPELEEPLKDILSTTYGLIVYQEQVMAIAQK 716 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++ Y+L AD+LRRAMGKK KEE+D+Q E F G +NG S ++++L F+DY F Sbjct: 717 VANYTLGGADLLRRAMGKKKKEELDRQFEFFEKGMKENGFSDEAIRALWDILVPFSDYAF 776 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+H AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ I+++PP V Sbjct: 777 NKAHTAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGIKVLPPDV 836 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 N DF I + L+A++ VG I++A + F DF +V ++ N+R Sbjct: 837 NDSDFDFTPRGGDIRFGLSAVRNVGANVVDGIIKARKEKGRFTDFADFLRKVPAQVCNKR 896 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 V+ESL+ AGA D G+ R L + ++KN +++F +G + Sbjct: 897 VIESLIKAGAFDSLGHERKGLFMIHEQAVDAVIDIKKNEAIGQDSLFGAVEGAEDTTFDV 956 Query: 941 EKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRL 997 + + + E+ +LG Y S HPL + IL G + + Sbjct: 957 QVPPGEWDKRTLLQFEREMLGLYVSDHPLLGVEHILAAGSDCSIAALQDESHPDGQVVTV 1016 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ Q+K T+KG T + E FP Sbjct: 1017 GGILSGLQRKITKKGDTWVLATLEDLEGSIEVMIFP 1052 >gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 494/1047 (47%), Positives = 681/1047 (65%), Gaps = 31/1047 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL+VH++YSL EGA+ L ++ PA+ ITDT NLF ALEFS Sbjct: 1 MPAYADFVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSD 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+G Q+ I +D + G+ P P +VLL GY L++LVS+ +L Sbjct: 61 AGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLCQNEAGYLNLLKLVSKAFLETD 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ ++ L L E ++GLI+LTGG +GP+ R ++ AE L + F R YV Sbjct: 118 AGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYV 176 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH + E +V LAY H+LPLVATN + F YEAHD L+ +A +SQ Sbjct: 177 ELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQD 236 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R R+TP+HY K+ EM ++F+DLPEA +NT+ IARRC+F + I Sbjct: 237 ERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIARRCAF-----GVAKRKPILPPYRMD 291 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356 E LR K GLE RL + +G + YR+R++FELNVI M F GY Sbjct: 292 GLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGY 351 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+DFIQW+K IPVGPGRGSGAGS A+ALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 352 FLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMP 411 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+C Sbjct: 412 DFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRIC 471 Query: 477 KLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KL+PN+PA+P++ QA+ + +E + D +V L++++ KLEGLYRHASTHAAG+VIG Sbjct: 472 KLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIG 531 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 DRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++ ++ + + + Sbjct: 532 DRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGI 591 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DLS IP DD ++Y LL+ G+FQLESSGMR L M P+ +ED+IA+V+LYRPGP Sbjct: 592 DIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGP 651 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I Y K+GKE+ +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL AD+LR Sbjct: 652 MDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLR 711 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK +EEMD+Q+ +F+ GA+ + A IF+ +AKFA+YGFNKSHAAAYA+I+Y Sbjct: 712 RAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAY 771 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 QTAW+K +YP EF+AA+MT EM N +K+ F Q+ + I+++PP +N F V Sbjct: 772 QTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLP 831 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + + Y+LAA+K VG + +++ F + DF +R+DSK LNRR LE++V A Sbjct: 832 DGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKA 891 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 G D +R +L ++ D + +YA ++R + ++ G+ + + LE + Sbjct: 892 GVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLG---GSNAPTLKLESGPDWSP 948 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQ 1005 + E +GFY S HPLD Y ++++ + E ++ +RLA ++SKQ Sbjct: 949 HEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQ 1008 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + KGSR ++ FS+ + +E F Sbjct: 1009 ERVSAKGSRYAFLQFSDASGMFEVTCF 1035 >gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187] gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187] Length = 1160 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL +HS +S+L+G + ++ + A + A+AITD N + F A + Sbjct: 1 MAE-PRFVHLHIHSDFSMLDGLQKIKPLVARAAENNMVAMAITDQMNQSGLVRFYGDAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + + ++ L EG Q LI+L+S+ +L Sbjct: 60 KGIKPIIGVDFWV----------QSEELGDELFHLIGLAMNNEGQQNLIQLISKGFLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL E G+I+L+GG G I + + + E+ +++ F +R Y+ Sbjct: 110 IQGRAVIDKAWLAE-HATGVILLSGGRDGDIGKFLLKGNQAMVERCTAFYQQHFPERFYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN+ +FL+++D++AH++ +A+ + Sbjct: 169 ELIRTGRLDEETYLHMAVELAIQQDLPVVATNDVVFLNKDDFDAHEIRVAIHDGYTLDDA 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + Y++ + EM +F D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 RRPKRYSNQQYMRTQDEMCELFKDIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA A+ Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLAFLFPDPAERAEKRIAYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLALDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFDVEPKLVELYEQDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDDQGLQPVTQFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINPRLKTEGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDPTSFKILKNSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHDSLQPILEPTYGIILYQEQVMQIAQTLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F SGA NG+ +A++IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSGFESGAVSNGVDGELAMHIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT +MDN +KI + ++ ++++PP VNT Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLKLIPPDVNTGQYR 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + + Y + A+KGVG I+ A PF L DFC+RVD K+LN+RV+E L Sbjct: 823 FTVNERGEVVYGIGAVKGVGEGPVEAIIAARNEGGPFRDLFDFCNRVDIKRLNKRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKF 943 ++AGALD G R L+ SL+ K A+ K+ ++F T Sbjct: 883 IYAGALDRLGPHRAALMASLEEAMKAAEQKAKDAALGQNDLFGDLFADDGVLPTPTFADV 942 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP++ Y L+ + T R A +V++ Sbjct: 943 PEWSDQKWLDGERETLGLYLTGHPINQYLAELKHYTSGRLCDLQPTERDKPAVAAGLVLN 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G +T + + + F Sbjct: 1003 ARIMVTKRGTKMGILTLDDRSGRLDITLF 1031 >gi|289422260|ref|ZP_06424114.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius 653-L] gi|289157311|gb|EFD05922.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius 653-L] Length = 1193 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 387/1065 (36%), Positives = 605/1065 (56%), Gaps = 55/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E++ F HL VH+ YSLL+G L+ ++ ++ + AITD +F A++F +K Sbjct: 1 MEENKDFCHLHVHTEYSLLDGFSRLDRLIPRLKELGMTSCAITDHGTMFGAIDFYKKCKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + + + ++LL EGY+ LI++VS Y +D Sbjct: 61 EGIKPIIGCEVYVAPRT---LDQKDSVLDKYSSHLILLAENNEGYENLIKIVSDSY-VDG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R L++ ++G+I L+ +G + +A + + A + ++ +FG D Y Sbjct: 117 FYYKPRTDKDQLRKY-SKGIICLSACLNGEVAKALLARNYENALNYAVEYRDIFGKDNFY 175 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H+ D+ + +++++ +PLVATN++ ++ ED + DVLM +A + Sbjct: 176 LEMQDHKLAEDKEVNAGLIKISKELGIPLVATNDAHYVYREDSKIQDVLMCIAMQKTLDD 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R + + Y+K+R EM +F +PEA++NT+EIA+RC+ + +P F E Sbjct: 236 PSRMKFPNDEFYIKSREEMEGLFKFVPEAIDNTLEIAKRCNVEFDFNNYHIPTFKVPEG- 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE+ LR GLE R + R RL+FE+N IA M + YFLIV Sbjct: 295 ---YTEESYLRYLCQKGLEERYED-------ITDEIRDRLEFEINTIANMGYIEYFLIVW 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DID Sbjct: 345 DFINFAKENNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDID 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP Sbjct: 405 FCYKRREEVIEYVKRKYGSDHVAQIITFGTMGAKLAIRDVGRVLDIAYNKVDAVAKEIPF 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A + E +D V ++++S+KLEG+ RHASTHAAG+VI RP+ Sbjct: 465 ELNMTID-KAFDKNPTLTEMYESDQDVKEVIDVSRKLEGMVRHASTHAAGVVISKRPVHD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVK 595 VP+YR+ D TQF M +E+ GL+K DFLGL+TLT+++ +LD K Sbjct: 524 YVPLYRN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREDRGYTEK 581 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D S + +DD + Y LL++ TLG+FQLESSGMR ++ ++PD EDI+A +SL+RPGP+ Sbjct: 582 IDFSKMDYDDPKVYELLSSGNTLGVFQLESSGMRNFMKQLKPDSFEDIVAGISLFRPGPM 641 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D+I Y + KN E+ +H + P+L+ T G ++YQEQVMQ+ + L+GYS +D++RR Sbjct: 642 DSIPRYISFKNNPEEATYLHEKLRPILEVTYGCLVYQEQVMQVVRELAGYSFGRSDLVRR 701 Query: 716 AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763 AM KK + M+++++ FI G +NG+ + IA IF+ + FA Y FNK Sbjct: 702 AMSKKKMDVMEEERQYFIHGKFDDKGNIEIPGCIRNGVPEDIANQIFDDMIDFAKYAFNK 761 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAY V++Y+TA++KT+YPVEF+AA MT + N +K+ ++ ++ + I+++PP +N Sbjct: 762 SHAAAYGVLAYETAYLKTYYPVEFMAALMTSVIGNTDKVVEYMRECSKLGIEVLPPDINR 821 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882 F V I + L A+K VG I++ + F + R+DS+ N+R + Sbjct: 822 SYSMFSVDKGHIRFGLVAVKNVGANVIDGIVKEREEGGEFTDFVNMIKRLDSRFTNKRAI 881 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-----TFSDK 937 ESL+ GALD G +R LL S ++I +K ++F D Sbjct: 882 ESLIKCGALDSLGETRASLLLSFEDILDSVSRDKKRNVEGQISLFDMVSDQGQDLGIIDN 941 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG---YEESVATI---- 990 +++ + + + E+ V+G Y SGHPL Y+ IL + +E Sbjct: 942 TSIKHYDEFKQKIILDMEKEVMGMYISGHPLSEYEDILARRTSINNFKIKELKEDPKLLQ 1001 Query: 991 --RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +VVS + T++ + +V + E FP Sbjct: 1002 ELNDQEHIVGGIVVSSRLMTTKRNEMMAFVEIEDIFGSLEVVVFP 1046 >gi|189218920|ref|YP_001939561.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4] gi|189185778|gb|ACD82963.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4] Length = 1159 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 387/1030 (37%), Positives = 575/1030 (55%), Gaps = 26/1030 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +HS YSLL+ + + +++ K PA+A+TD NL+ ++F + + I+PI Sbjct: 5 FVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ I K + + LL +GY+ L++L+S+ +L + R Sbjct: 65 IGCEAYITSGSRFDR----KGSRSHIYHMTLLAKNNQGYKNLLKLISKAHL-EGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 I L L+E GLI +G +G I + + A+K +LF Y+ +Q H Sbjct: 120 IDLELLKE-HKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQNH 178 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + A + LPLVATN+ ++ +ED + HDVL+ + ++ + R + Sbjct: 179 GLKEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKKY 238 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 Y K +M +F++ P+A+ENT IAR C +++ P + K Sbjct: 239 PCPEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPSPY---KTH 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR GL+ ++ ++RL++EL+VI + FS YFLIV DFI +A Sbjct: 296 GEYLRTLCYEGLQK-------RYDNISEQIKERLEYELSVIEQTGFSSYFLIVWDFIHYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KK IPVGPGRGS AGS+TAY L ITDIDP+++ L+FERFLNP R+S PD DIDFC +RR Sbjct: 349 KKEGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNRR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +VI YV+ KYG VAQIITFG+L AK A+RDV R L M Y + DR+ K+IP DP + Sbjct: 409 SQVIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLTL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + DP +L I+ KLEGL R A HAAG+VI + L +P+ R Sbjct: 469 ERAR-ELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPLSR 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606 ++ VTQ++M+ I + GL+K DFLGLKTLT++ + L + ++ +D P DD Sbjct: 528 GEHNE-IVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKENILLDPKQFPLDDK 586 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL T+G+FQLESSGM + ++ ++P IEDIIALV+LYRPGP++NI Y +RK Sbjct: 587 NTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMENIPAYADRKL 646 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GK I HPL++P+LK+T GV+IYQEQVMQ A +L+GYSL E+D+LRRAMGKK EEM Sbjct: 647 GKVPITYDHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKKKPEEMR 706 Query: 727 KQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 KQ+++FI G + + A+ IFE L KFA YGFNK+H+A Y ++Y TA++K +YPV Sbjct: 707 KQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANYPV 766 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 +L ++ E + EKI+ + R+ I ++PP ++ V F V I + L+AIK V Sbjct: 767 FYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEGGSIRWGLSAIKNV 826 Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 G A I+E+ + SL D C R+ + LN+++LESL+ +GA D G SR +LL+S Sbjct: 827 GEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRSRKELLES 886 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L K R + +N+F +D+ + K ++R E+ +LG Y Sbjct: 887 LPAALSAGSITSKERLSGQQNLFEEHNFIDPTDRQSSAKGEDYPLNIRLHWEKELLGTYL 946 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSE 1022 S HPLD + +R + + + + M+ ++K + + + + Sbjct: 947 SSHPLDEWMSWIRLFQNEPISSLKELADNSRLYVPGMITHIEKKTSQKSKKPYFKLILED 1006 Query: 1023 PAKEYEANFF 1032 E F Sbjct: 1007 QTGHIEVILF 1016 >gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Vibrio angustum S14] gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14] Length = 1159 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 405/1048 (38%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + I+ K + PA+A+TD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + +L + EGY+ L L+S Y Sbjct: 60 AGIKPIIGADFKV----------QSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL EGLI+L+GG +G + +A + ++ + + ++ F D Y+ Sbjct: 110 VQHLPVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + V+LA +LP+VATN+ L+ + ++AH++ +A+ + Sbjct: 169 ELVRTGRADEEAYLHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ + YL++ EM +F+D+PEAL+N+VEIA+RC+ +++ + Sbjct: 229 NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTIEDFLIAKSKEGLEERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + +A AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V+++ IP DD +++ +L + +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVNIAAIPMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E + H + +L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +KI + + ++++PP VN Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D + Y + A+KGVG +I+ A F L DFC+R+D+KK+N+RVLE L Sbjct: 823 FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G +R +L +LD+ K A + ++F + + Sbjct: 883 IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 943 EAPDKVWLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030 >gi|317485419|ref|ZP_07944298.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316923378|gb|EFV44585.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 1175 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 406/1046 (38%), Positives = 602/1046 (57%), Gaps = 34/1046 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL H+ YSLL+GA+ LN++ + PA AITD NL+ A F + GI+ Sbjct: 2 SEFVHLHCHTEYSLLDGAIRLNDLCARAKDFGMPAAAITDHGNLYGAAYFYTTCKSYGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IGC++ + K + + ++LL EGY L+ LVS+ +L D Sbjct: 62 PVIGCEVYVTKDHRDKDSEFSRVR----HHLILLAKNNEGYHNLVRLVSKGFL-DGFHYK 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAEKRLLTFKKLFGD 180 R+ + L++ +EGLI L+ +G I R + A ++ + ++ Sbjct: 117 PRVDKALLRQ-HSEGLIALSACLAGEIPRTLMGANKLITNGGTFDDAIRQTQEYMDIYDG 175 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R Y+ +Q + D+ +++++LA ++PLVATN+ +L+ +D EAHDVL+ + Sbjct: 176 RFYLEVQANTLPDQATLNNKLLELAEHTKVPLVATNDCHYLNADDVEAHDVLLCIQTQAK 235 Query: 240 VSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V+ R R EM F +PEAL NTV IA C + P + Sbjct: 236 VNDAKRMRFEARDLYYKSAEEMEQAFKHIPEALSNTVRIAEECHVEMDFTHHYFPVYELP 295 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E + E + A GL+ RL + Y RL+ EL VI M F GYFL Sbjct: 296 EGMTLST----EFQRLAREGLKQRLELHPDRDTIDPKIYWDRLEMELKVICEMGFPGYFL 351 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK N+IPVGPGRGS AGS+ A+AL IT++DPL ++L+FERFLN +R+S+PD Sbjct: 352 IVQDFINWAKGNDIPVGPGRGSAAGSIVAWALRITNLDPLPYNLIFERFLNIERVSLPDI 411 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC+D+R VI+YV KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KL Sbjct: 412 DVDFCEDKRTRVIQYVSQKYGIDSVSQITTFGKMKAKAVVRDVGRALDMSFKETDRIAKL 471 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+D + +A+ + D + +L++IS +LEGL RHASTHAAG+V+ D+P Sbjct: 472 IPDDLKMTIK-KALDAEPELATLYKEDQIIRKLIDISMRLEGLSRHASTHAAGVVVSDKP 530 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597 + + +P+YR + VTQF+MK +EK GL+KFDFLGL+T+TL+ +L + ++ + Sbjct: 531 MDEYLPIYRG-KKGELVTQFDMKMVEKVGLVKFDFLGLRTMTLIDNTLKAIEEQGKKAPN 589 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L ++P D +TY + + T G+FQ+ESSGMRQ L ++P+C EDIIA+++LYRPGP+ + Sbjct: 590 LDILPLTDPDTYDVFSRGDTDGVFQVESSGMRQYLRMLRPNCFEDIIAMLALYRPGPLGS 649 Query: 658 IVVYNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V K ++ P ++ LK+T GVI+YQEQVMQIAQ+++GY+L AD+LRR Sbjct: 650 GMVDEFIKRKHGEVDVTYPLPSLEGCLKDTYGVIVYQEQVMQIAQIVAGYTLGGADLLRR 709 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E M K++ F+ GA KNG SK A IF+L+ KFA+YGFNKSH+AAYA+ISY Sbjct: 710 AMGKKNAEAMAKERTLFVDGAVKNGTSKEKATEIFDLMEKFAEYGFNKSHSAAYALISYH 769 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++KTH+ VEF+AA +T E+ N +KI K+ + +I++ P V +F V D + Sbjct: 770 TAYLKTHHKVEFMAALLTSEIGNQDKILKYIAACKDNDIEVRQPDVQVSRREFIVRDEAV 829 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L IK VG R I+ A D PF S D C RV +K+ +RVLESL+ GALDCF Sbjct: 830 VYGLGGIKNVGDEAIREIVAAREKDGPFLSFLDLCIRVSLRKVTKRVLESLIKGGALDCF 889 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------KITLEKFSVE 946 G SR ++ ++D + AQ K + + ++ + E S Sbjct: 890 GCSRAAMVAAIDPVVARAQKKIKEKQSNQISLLTLSPKKIEENQASGIGFSCEEESISEW 949 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGF+ + HPL Y+ L ++ ++ E+ I+ A +V S ++ Sbjct: 950 DEDQKLRFEKEALGFFLTSHPLQPYRHELNRLDLRPLEDCREMADKATIKCAVLVTSIRE 1009 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++G+R+ +V + E FF Sbjct: 1010 ILNKRGNRMAFVAVEDLTASGEVTFF 1035 >gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2] Length = 1152 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 537/1042 (51%), Positives = 710/1042 (68%), Gaps = 21/1042 (2%) Query: 5 LEKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + FVHL VHSS+SL EGA+ + + AAD PA+AITD NNLF ALEFS Sbjct: 1 MSQKSAEAGLGFVHLHVHSSFSLREGAMGIGKLAKLAAADHMPALAITDGNNLFGALEFS 60 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +K G+QPIIG +L +D +D ++ +G+ SIVL+ GY L+ LVSR Sbjct: 61 EKLAKEGVQPIIGAELTLDFRDGAAISARGEELGAGRASIVLIAKDEAGYLNLMHLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L + + + L T G+I L+GG +GP+DRAF S+ A R +LF Sbjct: 121 WLDPEPGDPPHVPIERL-RGRTGGMIALSGGPAGPLDRAFAARRSEQAFARAAQLAELFP 179 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DRLY+ LQRH +R E +++ LAY LPLVA N F + DYEAHD L+ +A T Sbjct: 180 DRLYIELQRHNLAAEREAEPRLLDLAYRKSLPLVAANEPYFGTSSDYEAHDALICIAEGT 239 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V+ R +++P+H K R+EMV++F+DLPEA NTVEIARRC+F P+LPRF Sbjct: 240 VIGDGARRQLSPEHRFKTRAEMVALFADLPEASRNTVEIARRCAFRPLTRKPLLPRFSA- 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + E + LR++A AGLE R+ +AKG+ A+DYR+RL FEL+VI +MKF GYFL Sbjct: 299 --TGELEAEADALRSEAEAGLEARIEAHGLAKGFTAEDYRKRLAFELDVIVKMKFPGYFL 356 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+DFI++AK IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDF Sbjct: 357 IVSDFIKYAKSQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDF 416 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRRDEVI YV+ +YG ++VAQIITFGS A+ LR+VGR L+MP QVDRL KL Sbjct: 417 DIDFCQDRRDEVIAYVRRRYGADKVAQIITFGSFLARGVLRNVGRVLEMPLGQVDRLAKL 476 Query: 479 IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +P +PA PVS QAI + R +EA A+P V ++L+I+Q LEGLY +ASTHAAGIVIGDR Sbjct: 477 VPQNPAAPVSLKQAIDSEPRLKEAAEAEPRVAKMLQIAQTLEGLYSNASTHAAGIVIGDR 536 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PL QLVP+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L + L +RG++++ Sbjct: 537 PLEQLVPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLRRRGIEIE 596 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD +TY +L T+G+FQLES+GMR+AL M D EDIIALV+LYRPGP+ N Sbjct: 597 IDKIPLDDSKTYAMLGRGETIGVFQLESAGMRRALVDMHADRFEDIIALVALYRPGPMAN 656 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y K G+E+ IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAM Sbjct: 657 IPRYCAVKAGEEEADYIHPKIEGVLKETFGVIIYQEQVMQIAQILSGYSLGEADLLRRAM 716 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKIK EMD Q++RF+ GA NG++K A IF+LLAKFADYGFNKSHAAAYA+I+YQTA Sbjct: 717 GKKIKAEMDAQRDRFLRGAIDNGLAKAKANEIFDLLAKFADYGFNKSHAAAYALIAYQTA 776 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832 W K +YP+EFLAASMTL+ N +K+ +F +AR+ N + PPS+ DF+V G+ Sbjct: 777 WFKANYPLEFLAASMTLDKANTDKLAEFSNEARRLNGAVEPPSIQRSGADFEVCANDAGE 836 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y+L AIKGVG A ++ A KPF DF +R+D + +N+R+LESLV AGA D Sbjct: 837 LQIRYALGAIKGVGQGHAEALVAARNSKPFRDFADFSARIDPRAINKRMLESLVAAGAFD 896 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 R ++ +++ I A ++ R +F D++ L K + + R Sbjct: 897 EMEPDRARVFAAIETILASAHRRDEERRAGQSALFG---AGAEDRMPLPKVAPWTLAERL 953 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNN-IRLAAMVVSKQQKKTR 1010 E +GF+ SGHPLD Y I+ ++ ++ + E ++ G RLAA V+ +Q+++T+ Sbjct: 954 RREFDSVGFFLSGHPLDAYATIMSRLRVQRWTEFSRAVKLGATGGRLAATVLDRQERRTK 1013 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 GS++G V S+P+ +YEA F Sbjct: 1014 SGSKMGIVQLSDPSGQYEAILF 1035 >gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1160 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 426/1049 (40%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHV 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + Q + +L + GYQ L L+SR Y Sbjct: 60 AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+GG G + + + + E+ + +++ F DR ++ Sbjct: 110 GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y QRLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEG 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99] gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99] Length = 1157 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 413/1047 (39%), Positives = 590/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + PSFVHL+VHS +S+ +G + IL K+ PA+A+TD NL ++F + Sbjct: 1 MSD-PSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q +I +L T EGY L L+S YL Sbjct: 60 AGVKPIIGADFWM----------QVPGFDKEFCAITVLAMTNEGYSNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K I WL + ++GL++L+GG G + RA + + ++ F DR Y+ Sbjct: 110 IKDKAVIDQGWLAKY-SKGLLLLSGGRQGDVGRALLNGNHGQVASLIEFYRTHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA +LP+VATN +F E +EAH++ +A++ ++ Sbjct: 169 ELLRTGRPDEETYLHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y K EM +F D+PEA+ NTVEIA+RC+ +++ Sbjct: 229 RRPKKYSEQQYFKTSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE L + Y +RLD EL VI +M F GYFLI Sbjct: 284 GDLSIEDFLVKVSKDGLEDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K NIP+GPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDQNIPIGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++ Sbjct: 404 IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKELGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD + + LL T +FQLES GM+ ++ +QPD ED+IALV+L+RPGP Sbjct: 583 PVRIESIPLDDKKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + H + +L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIERKHGREVVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI + + ++PP VN + Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLK 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V + +I Y + AIKGVG I+ A + PF L DFC+RVD KKLN+R++E L+ Sbjct: 823 FTVDEEGKIVYGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKRIMEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 FAGALD G R ++ +L + A K ++F D K + + Sbjct: 883 FAGALDSLGPHRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQQFVQCTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +V++ + Sbjct: 943 WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMLTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1160 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 423/1049 (40%), Positives = 616/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G + Q + + I +L GYQ L L+S+ Y Sbjct: 60 AGLKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGL++++GG G + + ++ + ++ + +++ F DR Y+ Sbjct: 110 GALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRADEESYLHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSSQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 523 TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|291166424|gb|EFE28470.1| DNA polymerase III, alpha subunit [Filifactor alocis ATCC 35896] Length = 1151 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 367/1055 (34%), Positives = 596/1055 (56%), Gaps = 48/1055 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E+ F HL +H+ YSLL+G ++ + + K D A+AITD +F +EF + A Sbjct: 1 MERK--FTHLHLHTPYSLLDGFATIEDTIKKAKEDGMDAVAITDHGVMFGVVEFYKVALN 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + N K ++LL GYQ LI+LVS + ++ Sbjct: 59 YGIKPIIGCEVYVSYRTRFDKENIDKRS----YHLILLAENNTGYQNLIKLVSLGF-VEG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ + L+ +EG+I L+ +G + ++ N+ + A+K ++++FG D + Sbjct: 114 YYYKPRVDIDLLKSY-SEGIIALSACLAGEVQQSLLNNNYEEAKKVACRYREIFGEDNFF 172 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ + +L+ +PLVATN+ +++ D + HD+L+ + + Sbjct: 173 LELQNHGIEEQLKVNHLLRRLSLDTGIPLVATNDVHYVNRSDSKNHDILLCIQTGKTLDD 232 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 KDR T Y K R EM +FS +AL NT +I++RC+ + LP F Sbjct: 233 KDRMEFKTDQFYFKTREEMYQLFSKDEDALLNTWKISQRCNVSFDFNVIHLPEFQVPHH- 291 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +E GL+ R R+R ++E VI +M + YFLIV Sbjct: 292 ---YTKEQIFDELCERGLQERYFD-------ITPPIRERFEYEKKVIKKMGYVEYFLIVQ 341 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+++KKNNI VGPGRGS AGS+ +Y L ITD+DP+++ LLFERFLNP+R+SMPD DID Sbjct: 342 DFIRFSKKNNIMVGPGRGSAAGSIISYCLQITDVDPIKYHLLFERFLNPERISMPDIDID 401 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++R++VI YV+ KYG + VAQIITFG+ AKAA+RDVGR L + Y++VD++ K IP+ Sbjct: 402 FCYEKREQVIDYVKEKYGEDHVAQIITFGTFGAKAAIRDVGRVLGISYAEVDKIAKQIPD 461 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ +S ++ ++D +V +++ ++++EGL RHASTHAAG+VI + Sbjct: 462 NLGMTIE-KALEMNSELKKMYVSDNNVRNIIDFAKRIEGLPRHASTHAAGVVISKNTMDY 520 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 VP+Y DL TQF M +E+ GL+K DFLGL+TLT++QK+L+ + + K+D S Sbjct: 521 YVPLYM--HKDLIATQFPMTTLEELGLLKMDFLGLRTLTVIQKTLEAIEKIYNKKIDFSK 578 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 + ++ + LL+ TLG+FQLES GMR L+ ++PD EDI+A +SLYRPGP+++I + Sbjct: 579 MDTNNTRVFQLLSNGNTLGVFQLESPGMRSFLKELRPDTFEDIVAGISLYRPGPMESIPI 638 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y KN I +H + P+L+ T+G+++YQEQVMQI + L+GYS + AD++R+AM KK Sbjct: 639 YIENKNNSNHISYLHESLKPILEVTKGIMVYQEQVMQIVRSLAGYSYARADLVRKAMSKK 698 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 + M++++E F+ G +NGI + IA I++ + FA Y FNKSHA Sbjct: 699 KMDVMEEEREYFVYGKISGSGDIEISGCVRNGIPEKIANQIYDEMIDFAKYAFNKSHAVC 758 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y+TA++K YP F+A+ MT D +K+ ++ ++ NI I+ P +N F Sbjct: 759 YAMLAYETAYLKAFYPSCFMASLMTSVSDRSDKVIEYIRECADLNICILKPDINRSNSYF 818 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y+LA+IK +G I++ + F S EDF R+ K +++R +ESL+ Sbjct: 819 SVEGDHIRYALASIKNIGIKAIDDIVQERNKNGEFQSFEDFIKRIPQKNISKRFVESLIK 878 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVE 946 AG D +R L+ + + +K+ +F++++ + + S Sbjct: 879 AGCFDSIHPNRASLVAGYEKVMDIVHSQKKHSIQGQVTLFSNQEALPNQNLNFFPHISDF 938 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATI-------RGNNIRLA 998 + + E+ +G Y SGHPLD Y+ +++ I + I + Sbjct: 939 SIKEKLYMEKETIGLYLSGHPLDEYQDVIKDDTNIVSIDSIKNIPSHQKSEIEKKKIVIV 998 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++SK K T++ + ++T + + E FP Sbjct: 999 GTILSKMIKYTKQNKIMCFLTIEDFSGSLEVLIFP 1033 >gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath] gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str. Bath] Length = 1165 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 426/1043 (40%), Positives = 613/1043 (58%), Gaps = 31/1043 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ YSL++G + + ++ +++ PA+A+TD NLF+ ++F + A AGI+ Sbjct: 3 PKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G + + Q + + LLV EGY L EL+SR Y +Q + Sbjct: 63 PIAGADVWL----------QNPQDVSSPHRLTLLVQNQEGYLALTELISRSYQENQHQGV 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL + GLI L+GG G I A S A + + +F DR Y+ + R Sbjct: 113 PMLMPEWLADCNA-GLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCR 171 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + V+LA +LP+VATN+ FLS +++EAH+ + + V+ RPR Sbjct: 172 TGRANEERYIDAAVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRPR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YL++ EM+S+F+DLPEALEN+VEIARRC+ L + LP F Sbjct: 232 DYSEQQYLRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDDF 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R L VR GA Q Y RL+ EL+VI M F GYFLIVADFIQW Sbjct: 292 FSEQSRQGLKERLAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVADFIQW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DFC +R Sbjct: 352 AKSQGIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMER 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG ++V+QIIT+GS+ AKA +RDVGR L PY VDR+ KLIP + Sbjct: 412 RDEVIDYVARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFELGIT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +S +A+ D R++ D V LL+++Q LEG+ R+ HA G+VI L P+Y Sbjct: 472 LS-KALEDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLIDFSPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLI 601 + VTQF+ +E GL+KFDFLGL+TLT++ +L + + VD++ I Sbjct: 531 CEPGGGNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPVDINRI 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659 P DD +TY LL T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ + + Sbjct: 591 PLDDPKTYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVD 650 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y N K+G+ K HP+++P+LK T GVI+YQEQVMQIA+ ++GY+L AD+LRRAMGK Sbjct: 651 DYINVKHGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLRRAMGK 710 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM KQ+E FI+GA++ GI +I+ +IF+L+ KFA YGFNKSH+AAYA++SYQTAW+ Sbjct: 711 KKPEEMAKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSYQTAWL 770 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838 K HYP EF++A ++ +MDN +K+ + R+ + I+PP +N F V G I Y Sbjct: 771 KAHYPAEFMSAVLSADMDNTDKVVVLIDECREMKLSILPPDINLSEYRFTVRGRREILYG 830 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+KGVG T I++ + PF L D C R+D +K NRRVLE+++ AG DCF + Sbjct: 831 LGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFDCFDRN 890 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFE 953 R L +L ++ K A+ +++F S + + + R Sbjct: 891 RAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAEAERLA 950 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKT 1009 E+ LG Y +GHP+ ++ L ++ + G + +A ++V + + T Sbjct: 951 QEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGGRGDTRVVVAGLIVDIRTRLT 1010 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 R G ++G+++ + E + Sbjct: 1011 RSGQKMGFLSLDDRTGRMEIAVY 1033 >gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola LSR1] gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola LSR1] Length = 1160 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 421/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS YS+++G + ++ K A+ PA+AITD NL ++F A A Sbjct: 1 MTD-PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q K + + +L +GYQ L L+S+ Y Sbjct: 60 AGIKPIIGADFYL----------QSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL +EGLI+L+GG SG + + + + L +++ F D Y+ Sbjct: 110 GASGPLIDRDWLI-THSEGLILLSGGRSGDVGKFMLRGNQTQMLECLAFYQQYFADNYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + LA H++P+VATN+ F+ D+EAH++ +A+ ++ Sbjct: 169 ELIRTGRPDEENYLRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADT 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P +++N EM ++FSD+PEAL N++EIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQFMRNEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ KA GLE RLA Q Y +RL+ E+ VI +M F+GYFLI Sbjct: 284 GAMSTEDFFAEKAQLGLEERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC ++RD+VI +V N YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 IDFCMEKRDQVIEHVANIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P D + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDVGMTLE-KAFAAEPQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ LL T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP Sbjct: 583 SIDITTIPLDDKKSFALLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H L+ P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 643 LQSGMVDNFIDRKHGREALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F +GA + GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKDPVEMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+A MT +MDN +K+ + + ++++ P +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAGVMTADMDNTDKLVGMVDECIRMGLKVLLPDINSGSYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+ A A F L D C+R ++KKLNRRVLE L Sbjct: 823 FNVNDDGEIVYGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+ SL+ K A K +++F G+ + + + Sbjct: 883 ILSGAFDRLGPHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIA 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + E E+ LG Y +GHP+ Y L + G ++ T RG +A +V++ Sbjct: 943 PWQEQIVLEGERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVIVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|300088655|ref|YP_003759177.1| DNA polymerase III subunit alpha [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528388|gb|ADJ26856.1| DNA polymerase III, alpha subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1211 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 385/1041 (36%), Positives = 579/1041 (55%), Gaps = 38/1041 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ +SLL+G + ++ + A+AITD ++ AL+F ++ A I+PI Sbjct: 2 FTHLHVHTEFSLLDGMCRIPALVHRAKELGMTALAITDHGTMYGALKFYRECLAQDIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L T GK +VLL GY+ L++LVS + R Sbjct: 62 IGCEVYVAPGSRLDKTPAGKNHR----HLVLLARNNTGYRNLLQLVSLANT-EGFYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + EGLI L+ SG + R N A + ++ F Y +QRH Sbjct: 117 VDREILAKY-REGLIALSACPSGEVPRLILENRLSEARETAEWYRDNFDGDFYFEIQRHP 175 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ L+ ++PLVAT ++ ++ ED + HD+L+ + +V R ++ Sbjct: 176 MPEFDRINNALIDLSRELDIPLVATGDTHYVRREDAQTHDLLLCIGTGAMVKDTSRMKMQ 235 Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YLK+ +EM ++ D+PEALENT IA +C L+ LP+ + Sbjct: 236 ADSFYLKSEAEMAELYRDIPEALENTNRIADKCDLKLEFGRVHLPQIDRPAG----LTSD 291 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L L ++ R+RL +EL VI + +F+ YFL+V D I++ K Sbjct: 292 EYLSQLCHEALPRLYPD-------ASEAVRERLTYELEVIEKTQFADYFLVVWDIIRFVK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I G RGS A S+ L IT++DPL ++L+FERFLN +R MPD D+DF DRRD Sbjct: 345 ERGIYFG-VRGSAAASIVLRCLDITEVDPLEYNLVFERFLNIERKEMPDIDMDFQDDRRD 403 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG + VAQIITFG+L A+AA+RD GRAL + VDR+ +LIP P + Sbjct: 404 EVIEYVSEKYGLDHVAQIITFGTLGARAAIRDTGRALGIDLPVVDRVARLIPFGPNMTLD 463 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR- 547 +A+ +++ REA D +V ++++ ++++ GL RHASTHAAG+VI PL+ P+ R Sbjct: 464 -KALEENTELREAVAKDGTVQKIIDAARQVSGLSRHASTHAAGVVISKEPLALHAPLQRL 522 Query: 548 ------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600 D RSDL +TQ+ M+ I GL+K DFLGL L++L ++ + + QR + D+ Sbjct: 523 NRESASDARSDLVMTQYPMEDIGLIGLLKMDFLGLANLSILSRAQEIIGQRHGRPLDVHR 582 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP DD +T+ LL+ T+G+FQLE +GMR+ ++ ++P DI A+V+LYRPGP++ I Sbjct: 583 IPLDDPKTFALLSAGETMGVFQLEGAGMRRYIKELKPTHFTDIAAMVALYRPGPMEQIPR 642 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K+G+E I HP ++ +L+ET GVI+YQEQV+ IA+ SG+SL +AD+LR+AMGKK Sbjct: 643 FIRSKHGEEAITYPHPALEEILQETYGVIVYQEQVLFIARTFSGFSLGQADILRKAMGKK 702 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 E M KQK+ FI+GA KNG S+ +AV +F L+ FA Y FNK+HA +YA+I+YQTA++K Sbjct: 703 NPEVMQKQKQNFIAGALKNGYSEDLAVEVFGLIEPFAGYAFNKAHAVSYALIAYQTAYLK 762 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRI 835 +YPVE++AA + + D EK+ + R+ I ++PP +N V+F V D I Sbjct: 763 ANYPVEYMAAFLATQRDVAEKVAAAAVECRRLGISLLPPDINNSDVNFSVEDSSPAGPAI 822 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + LAA+K VG ++ E + PF S+EDFC RVD LNRRVLESL+ AGALDC Sbjct: 823 RFGLAAVKNVGEAAVTGLVAERRSGGPFTSVEDFCRRVDGACLNRRVLESLIKAGALDCL 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRF 952 G R LLQ+ + +A+ + R + +F G +++ Sbjct: 883 G-DRATLLQNAGRLLDFAERERRIRDSGQGTLFDLFGGVAEAPPVALDLESGSATFNDIL 941 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ +LG Y S HP + + E + G LA MVV+ + +TR G Sbjct: 942 AWEKDLLGLYVSAHPFSRFVGKVDHDTTALCGEITEEMEGQTTTLAGMVVAVRLAQTRDG 1001 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + V + E +P Sbjct: 1002 NTFANVELEDLNGRVEVIAWP 1022 >gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12] gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12] Length = 1157 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 408/1047 (38%), Positives = 592/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + PSFVHL+VHS YS+ +G + IL K+ PA+A+TD NL ++F Sbjct: 1 MSD-PSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + + + S+ ++ +GY L L+S YL Sbjct: 60 AGVKPIIGADFWV----------RVPGFDKDLCSVTVIAMDNDGYLNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + + GL++L+GG G + RA + + + ++ F DR Y+ Sbjct: 110 INDRAVIDQEWLIKY-SNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN +F S E ++AH++ +A++ ++ Sbjct: 169 ELLRTGRPDEETYLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + Y K+ EM ++F D+PEA+ NTVEIA+RCS +++ Sbjct: 229 RRPKKYSDQQYFKSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE L + Y +RLD EL VI +M F GYFLI Sbjct: 284 GELSIEDFLVKVSEDGLENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++ Sbjct: 404 IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ ++ +QPD ED+IALV+L+RPGP Sbjct: 583 PVRIESIPLDDKKSFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIERKHGREEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI + + ++PP VN + Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLK 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V + +I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ Sbjct: 823 FNVDEEGKIVYGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDSLGPHRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +V++ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110] Length = 1167 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 525/1035 (50%), Positives = 704/1035 (68%), Gaps = 15/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS+YSLL+G++ + + + D QPA+A+TDT+NLF ALEFS K Sbjct: 1 MPSA-GFVHLHVHSAYSLLKGSIKIGKLAELAKKDHQPALALTDTDNLFGALEFSDKMAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPI+GC+L ID D P +VLL + GY+ L+ L SR +L Sbjct: 60 SGIQPIVGCELAIDFGDQDPTARNAIGP----SRVVLLAAQERGYRSLMRLNSRAFLETP 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W + TEGLI LTGG GPI A +++A R LFGDRLY+ Sbjct: 116 DSHAPFIKFDWF-DGETEGLIALTGGPDGPISLALAGGMAELAATRCERLATLFGDRLYI 174 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R ES ++ +AY LPLVATN F + +DYEAHD L+ +A ++++ Sbjct: 175 ELQRHNIDKERRVESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAES 234 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE--KECD 301 DR ++TPDH K R+EM +F+D+PEAL +TVEIA RCSF PILP F Sbjct: 235 DRVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASS 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D E EL+ +A GL RL +++G +DY +RL FEL+VI RMK++GYFLIV+ Sbjct: 295 DAAAVEAAELKRQAEEGLANRLRVHGLSQGTTEEDYSKRLAFELDVIMRMKYAGYFLIVS 354 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGS+ A+ALTITD+DP++F LLFERFLNP+R+SMPDFDID Sbjct: 355 DFIKWAKSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDID 414 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR EVI+YVQ +YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P Sbjct: 415 FCQDRRGEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 474 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA PV+ AI + + + R DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS Sbjct: 475 NPAAPVTLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLS 534 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L + L R + VDL+ Sbjct: 535 ELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLAT 594 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD E+Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 595 LPIDDAESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 654 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y +RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ++SGYSL +AD+LRRAMGKK Sbjct: 655 YCSRKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKK 714 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 I+ EMDKQ++ F++GA KNG+ K A IFELLAKFADYGFNKSHAAAYA++SY TA+MK Sbjct: 715 IRAEMDKQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMK 774 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYPVEF+AASMTL+++N +K+ +F +A++ I++ PP++N F+VG+ IYY+LA Sbjct: 775 AHYPVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALA 834 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+KGVG I+E + F SL DF +RV+ + +N+R++ESL AGA D +R Sbjct: 835 ALKGVGIQAIDQIIEERTKNGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRA 894 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++ D I Q + T ++F + I L + + R E + Sbjct: 895 RVFAGADAILAACQRAHEAATIGQNDMFGMSAD--APTIMLPQIEAWLPAERLRREYDAI 952 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ SGHPLD Y +L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 953 GFFLSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGI 1012 Query: 1018 VTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1013 MGLSDPTGHFEAVLF 1027 >gi|291561482|emb|CBL40281.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing bacterium SS3/4] Length = 1159 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 382/1046 (36%), Positives = 573/1046 (54%), Gaps = 39/1046 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + + ++AITD ++ ++F + A AAG++P Sbjct: 2 AFTHLHVHTEYSLLDGSSKIGELAARAKELGMDSMAITDHGVMYGVIDFYRAARAAGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + +VLL GYQ L+++VS+ + +D Sbjct: 62 IIGCEVYVSPGSRFDR--ETVHGEDRYYHLVLLAENNTGYQNLMKIVSKGF-VDGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI ++E EG+I L+ +G + R + A+ ++FG+ ++ LQ Sbjct: 119 RIDEEVMREYH-EGIIALSACLAGEVPRYLEKGLYEDAKAAAKRHLEIFGEGNYFLELQD 177 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H R +++L+ +PLVATN+ +++ ED+EAHD+L+ + VS ++R R Sbjct: 178 HGIPMQRQVNQGIMRLSKELNIPLVATNDCHYINAEDWEAHDILLCIQTGKKVSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F PEA+ENT +IA RC+ ++ LPRF E D Sbjct: 238 YEGGQYYVKSEEEMRRLFPYAPEAIENTHKIAERCNVEIEFGVTKLPRFDVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + G +R R RLD+EL I M + YFLIV DFI + Sbjct: 294 SWGYLNHLCDEGFAMRYPNDDGT-------LRARLDYELGTIKSMGYVDYFLIVWDFINF 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + I VGPGRGS AGS+ AY L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R Sbjct: 347 AKSHGIAVGPGRGSAAGSIVAYCLKITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ++VAQI+TFG+L A+ +RDVGR + +PYS D++ K++P + Sbjct: 407 RQEVIDYVVEKYGKDQVAQIVTFGTLAARGVIRDVGRVMDLPYSLCDQVSKMVPAELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ + + +D V +L+++S++LEGL RH S HAAG+VI + + VP+ Sbjct: 467 LD-LALRKNPELKALYDSDEQVRKLIDMSKRLEGLPRHTSMHAAGVVISRTSIDEYVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 R VTQF M +E+ GL+K DFLGL+TLT++Q ++ + + GV +DL I +DD Sbjct: 526 RGA-DGTIVTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKMIKKDHGVDLDLEHIDYDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + L T G+FQLES G + ++ ++P +EDIIA +SLYRPGP+D I Y K Sbjct: 585 KKVMDSLGTGKNEGVFQLESGGFKTFMKELKPTTLEDIIAGISLYRPGPMDFIPKYLKGK 644 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N E I P ++P+LK T G I+YQEQVMQI + L+GY+L +D++RRAM KK M Sbjct: 645 NDPESITYTCPQLEPILKPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 704 Query: 726 DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+++ F+ G NGI + A I++ + FA Y FNKSHAAAYAV++YQTA Sbjct: 705 AKERQNFVYGNEEEGVKGCIANGIDEKTANQIYDDMTDFAKYAFNKSHAAAYAVVAYQTA 764 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K +YP EF+AA MT MDN K+ ++ R I I+PP +N F V N I Y Sbjct: 765 FLKYYYPKEFMAALMTSVMDNTTKVSEYILACRNMGIPILPPDINEGYSGFSVSGNGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+AIK VG I+ F +L+DF SR+ +K++N+R LES + +GALD Sbjct: 825 GLSAIKSVGRAVVDVIIAERESGGLFKNLDDFVSRMSNKEVNKRTLESFIKSGALDTLPG 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFEN 954 +R Q L ++ + +K + F D IT + Sbjct: 885 TRKQKLIVSGDLLESKSKEKKTVMEGQMSFFDIAPEEEKDNFHITFPDVGEYDKQTLLAF 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQK 1007 E+ +G Y SGHP++ Y+ + K + V +N+ + M+ SK+ K Sbjct: 945 EKETIGIYVSGHPMEEYRELWEKNVTARTSDFVVDEVGKTIVEDNSNVVIGGMITSKKVK 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T+ + ++T + E FP Sbjct: 1005 TTKTNQLMAFITVEDLVGTVEVLVFP 1030 >gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7] gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7] Length = 1185 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 420/1060 (39%), Positives = 610/1060 (57%), Gaps = 55/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ +SL++G + + + +A PA+A+TD +N+ S ++F + A AGI+P Sbjct: 16 SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G + + + + + LL A GY+ L EL+SR + Q + Sbjct: 76 ICGADIWLA----------SREEDGPLSRLSLLAMNARGYRNLTELISRGWSEGQRNGEI 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W+ + EGLI L+ G I A AE L + ++F +R YV +QR Sbjct: 126 IIERDWV-KAAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D V LA PLVATN+ F+ +ED+EAH+ + + + RPR Sbjct: 185 SRVNDEEHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRT 244 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F I Sbjct: 245 YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300 Query: 308 ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFLIV DF Sbjct: 301 DDYLRHASFEGLEERLEVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 361 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 421 MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + E++ KLEG+ R HA G+VI L+ Sbjct: 481 GMTLE-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 540 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 600 DFIPLDDKPTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659 Query: 659 V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 660 MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G NGI +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 720 MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTH+P F+AA +T +M N +K+ ++ R ++I+ P VN F V Sbjct: 780 VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I E A+ PF++L DFC RVD K++N+R LE+L+ AG Sbjct: 840 DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ALD G +R LL +++ + A+ ++ + H ++F Sbjct: 900 ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959 Query: 935 SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + K R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 960 EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G+VT + + EA+ F Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057 >gi|322831603|ref|YP_004211630.1| DNA polymerase III, subunit alpha [Rahnella sp. Y9602] gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602] Length = 1160 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 411/1049 (39%), Positives = 602/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ A+ PA+AITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG L++ Q + + + +L +GYQ L L+SR Y Sbjct: 60 AGVKPIIGADLNV----------QSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L WL E+ EGLI+L+G G + + + + L +++ F DR Y+ Sbjct: 110 GAAGPIVDLEWLAEL-NEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + V LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRAEEENYLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T Y+++ EM +F DLPEAL+N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYTSQQYMRSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVEKSKIGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNSVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L++++++LEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PD ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLN+R+LE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVM 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + E+ LG Y +GHP+ Y + + G + ++ T RG +V++ Sbjct: 943 PWPEQTVLDGERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130] Length = 1166 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 550/1028 (53%), Positives = 709/1028 (68%), Gaps = 9/1028 (0%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YSLLEGA+ L ++ A D QPA+AITD +NLF ALEFS KA G+QPI Sbjct: 23 FVHLHTHSAYSLLEGAVPLAKLMTLAADDDQPALAITDRSNLFGALEFSSKAAKEGLQPI 82 Query: 71 IGC--QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC ++D D + + + P++VLL S GYQ LI LVS Y+ + Sbjct: 83 IGCTLEVDFDDEGRGSRSGSTQQAMVAFPTLVLLASDERGYQNLIRLVSLAYMEGAVESR 142 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I + L E +GLI+LTGG+ GPID + A RL FGDRLY+ LQR Sbjct: 143 PHISMGQLVE-HNDGLIILTGGAHGPIDAMIVDDHPTEARARLARLNDAFGDRLYIELQR 201 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 GY RE +++ +AY + +VATN F EDY AHD L+ +A +VS+ DR R+ Sbjct: 202 QAGYSPKREGEILAMAYELGIGIVATNEVFFAKREDYSAHDTLICIAEGRMVSEDDRRRL 261 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TPDHYLK+ +EM +FSDLPEA++NT IA+RC+F +Q PILP F DD E Sbjct: 262 TPDHYLKSTAEMNVLFSDLPEAIDNTTIIAQRCAFAVQELDPILPFFTGGVGDDPLAAEA 321 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AV GL+ RLA +A GY + Y +RL+FEL+VI MKF GYFLIVADFI+WAK Sbjct: 322 AELRKQAVDGLKDRLAVHPLADGYTREQYNERLEFELSVIENMKFPGYFLIVADFIKWAK 381 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGSGAGS+ A++LTITD+DPL+FSLLFERFLNP+R+SMPDFDIDFCQDRRD Sbjct: 382 EQGIPVGPGRGSGAGSLVAWSLTITDLDPLQFSLLFERFLNPERVSMPDFDIDFCQDRRD 441 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ+KYG ++VAQIITFG+LQA+A LRDVGR LQ+PY QVDRLCK++PN+PA+P Sbjct: 442 EVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDRLCKMVPNNPANPTP 501 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 L + + VD L++IS KLEGLYRHASTHAAGIVIGDRPL QLVP+YRD Sbjct: 502 LYRAVVEEAGLIEARKEEEVDHLIDISLKLEGLYRHASTHAAGIVIGDRPLDQLVPLYRD 561 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 RSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+++ + ++L +R V+VD+ + DD T Sbjct: 562 PRSDMPVTQFNMKWVEKAGLVKFDFLGLKTLTVIRTAQNYLKERNVEVDVDKLTLDDEAT 621 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + +L T+G+FQLES GMR+AL GM+ D EDIIALV+LYRPGP++NI YN RK+G+ Sbjct: 622 FKMLQRGETVGVFQLESMGMRKALIGMKADAFEDIIALVALYRPGPMENIPTYNARKHGE 681 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E+ HP I+ +LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Q Sbjct: 682 EEADYYHPKIEHVLKETQGVIIYQEQVMQIAQILSGYSLGEADMLRRAMGKKIASEMEAQ 741 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + RF+ G KN I A IF++LAKFADYGFNKSHAAAYA++SYQTAW+K ++PVEFL Sbjct: 742 RARFVDGCEKNDIKAQQANYIFDVLAKFADYGFNKSHAAAYALLSYQTAWLKANHPVEFL 801 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A+ MTL+M N +K+ F ++A + I+++ PSVN+ V F V D +I+Y+LAAIKGVG Sbjct: 802 ASLMTLDMGNTDKLNDFYREAVRAKIEVVAPSVNSSQVKFSVKDGKIHYALAAIKGVGAQ 861 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 HI+E D PF SL F SRVD K+LNR++LE+L+ AGA D FG +R +L+ LD Sbjct: 862 AVAHIVEVRDRDGPFQSLTSFFSRVDPKQLNRKMLENLIHAGAFDGFGPAREELIGGLDR 921 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + ++ V +N ++F + G + L K + ++ R + E +GFYFS HP Sbjct: 922 LIGHSVRVAENEAIGISDMFGGDTG--ETDVVLPKVAAWAAAERLQREHAAMGFYFSAHP 979 Query: 968 LDVYKPILRKMGIKGYEE--SVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 LD Y+ L K+ + + + G L V S Q +KT++G R+G S+ Sbjct: 980 LDEYQTTLEKLRAQSWADFQLAVKASGQAPGILGGTVSSIQYRKTKRGKRMGIGMLSDAT 1039 Query: 1025 KEYEANFF 1032 ++E F Sbjct: 1040 GQFEVVLF 1047 >gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614] Length = 1154 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 552/1028 (53%), Positives = 720/1028 (70%), Gaps = 12/1028 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+VHS+ SLLEGAL + +LD AD QPA+AI DTNNLF A EF+ KA AGIQPI Sbjct: 14 YVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIADTNNLFGAQEFATKAWGAGIQPI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 CQL + D L+ G+ P + +VLL T GY L+EL SR +L + Sbjct: 74 AACQLSVFFDDGLE---SGRRGEPALSDVVLLAMTEAGYGNLMELSSRAFLDTETGLRPH 130 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + +L +EG+I+LTGG GPI A +A+ RL T F R YV +QRH Sbjct: 131 VSSGYLLSK-SEGVIVLTGGVGGPIGAALLAGRKDLAKSRLQTLADRFQGRCYVEIQRHG 189 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +R E + LAY H LPLVATN + F EDYEAHD L+ ++ V+ + DR R+T Sbjct: 190 MEAERKTEDAFLDLAYEHGLPLVATNEAFFPRREDYEAHDALICISEGRVLIEDDRRRLT 249 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+HY K+R+EM ++F+DLPEALE+TVEIARRCSF APILPRF + D + E+ Sbjct: 250 PEHYFKSRAEMCALFADLPEALESTVEIARRCSFRPLKRAPILPRFAGADADPEEAEKAE 309 Query: 310 E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L +A GL RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WA Sbjct: 310 AEELIRQAREGLRARLDVHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 369 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR Sbjct: 370 KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 429 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV Sbjct: 430 EEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 489 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + QAI ++ R REA + V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y Sbjct: 490 TLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 549 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PV QFNMK +E+AGL+KFDFLGLKTLT++ ++ + +RG+ VD++ +P DD Sbjct: 550 RDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGIDVDVAALPIDDE 609 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY LL T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+ Sbjct: 610 KTYQLLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 669 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G++ +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Sbjct: 670 GEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 729 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ RF+ GA + GI+K+ A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE Sbjct: 730 VQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 789 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AASMTL++ N EK+ + Q+AR+ I+I PPS+N V F V D +I Y++ AIKGVG Sbjct: 790 FMAASMTLDLGNTEKLGDYRQEARRMKIEIEPPSINRGQVYFDVADGKILYAMGAIKGVG 849 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 HI+E DKPF SL DF R+ K LN+R LE+LV AGA D +R ++ + LD Sbjct: 850 EQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLD 909 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 I AQ E+N+T + +F + + L++ + + + E +GFY S H Sbjct: 910 RIMGLAQRTEENKTLGQDELFGGCDS--EEPLQLDEVHGWTNEEKLQREHSAIGFYLSAH 967 Query: 967 PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 P+D Y +L KM ++ + + ++ ++ RLA VVS Q++KT+ G+R+G V S+ Sbjct: 968 PIDEYAAVLEKMRVQPWSQFSEAVKKGASHGRLAGTVVSMQERKTKTGNRMGIVRLSDAT 1027 Query: 1025 KEYEANFF 1032 +YEA F Sbjct: 1028 GQYEALLF 1035 >gi|45656127|ref|YP_000213.1| DNA polymerase III subunit alpha [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599360|gb|AAS68850.1| DNA polymerase III alpha subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1173 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 383/1044 (36%), Positives = 597/1044 (57%), Gaps = 31/1044 (2%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 ++ ++ F HL +H++YS+L+GA+ + ++ + ++A+TD N+F A+EF Sbjct: 1 MSLTMQ---DFAHLHLHTNYSMLDGAIRIKELMQHVKECGMSSVAMTDHGNMFGAVEFYN 57 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 +A GI+PIIG + + + + T K ++LL EGY+ LI L S+ Y Sbjct: 58 EAIKQGIKPIIGSEFYVSP-NRKQETEMVKIADGNAYHLILLAKNEEGYKNLIRLSSKSY 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179 + + RI L +EGL+ LT +G ++R + + ++F Sbjct: 117 T-EGFYKKARIDYDLLDR-HSEGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK 174 Query: 180 DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ +Q H ++ QV + +PLV TN+S FL + D EA D+L+ + Sbjct: 175 EDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSHFLKKNDQEAQDILLRIGMQK 234 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ + Y+KN EM IF ++PEA NT+EI+ + + LQ +LP F Sbjct: 235 RITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEISNKVNLKLQFGNYLLPEFEVP 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D ++ L G+E + + + ++R+ FELN I MKF+GYFL Sbjct: 295 EGYD----ADSYLEKLIWEGIERKYLN-------LSPEIKERVIFELNTIKNMKFAGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR MPD Sbjct: 344 IVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDI 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K Sbjct: 404 DTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKA 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 PN +S +A++ S + D ++ I+Q+LEG YR HAAG+VI P Sbjct: 464 FPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYP 522 Query: 539 LSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 L ++VP+ + P VTQ++ +E GLIK D LGLK LT L ++ + QR Sbjct: 523 LEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIEQRR 582 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++++L I +DD TY LL TLGIFQLES+G+ + Q ++I+AL++LYRP Sbjct: 583 GIRINLDEISYDDANTYSLLRKANTLGIFQLESTGITDLVAKSQVSNFDEIVALIALYRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + Y +RK+GK+++ HP +P+LKET GV +YQEQVM I++++ G+S+ ++ Sbjct: 643 GPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDS 702 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 DVLR+AM KK + MDK K +F+ GA K GI + +A ++FE L +F YGFNKSH+ AYA Sbjct: 703 DVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYA 762 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+YQTA++K +Y +E+L A + + I K+ +AR+ IQI+ P V+ F V Sbjct: 763 IITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIQILNPDVSESQASFSV 822 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 DN I + L+A+KGVG T A I++A F +L+DF +D++ +N++V E+L+ A Sbjct: 823 IDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDFALNIDTRLINKKVFEALIQA 882 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD FGY+R L +S+D+I +AQ ++ ++F +E+ +FS + + Sbjct: 883 GALDSFGYTRKCLFESVDSILTFAQKEQERANEGQFSLFGNEESSFSLNLPKDAL-EWEI 941 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + E+ + G Y SGHPLD Y+ L+ + E+ G + +A ++ SK K Sbjct: 942 DEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDDLKSGTKVEVAGVISSKNIKL 1001 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 +++ + E E F Sbjct: 1002 SKRNEEFANFKLEDRTGEIECVAF 1025 >gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1173 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 418/1065 (39%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LLV A GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDAPLSRISLLVMNALGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 S+ I W+ E +EGLIML+ G I A + + AE + +F DR Y+ Sbjct: 109 RNGSIIIEREWVAE-ASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA PLVATN+ F+ ++D+EAH+ + + + Sbjct: 168 EVQRTNRPNDEEHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSKNYSNQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + + H ++F Sbjct: 883 LIRSGALDRLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942 Query: 930 EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 1159 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 494/1048 (47%), Positives = 677/1048 (64%), Gaps = 31/1048 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + FVHL+ H++YSL EGA+ L ++ PAI I DT NLF ALEFS Sbjct: 5 AMPIHADFVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFSTSCA 64 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGIQPIIGCQ+ + ++ G+ P P +VLL + GY L++LVS+ YL Sbjct: 65 DAGIQPIIGCQVAV-RREGEAPARDGRKPDPDW--LVLLCQSETGYANLLKLVSKAYLET 121 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 ++ ++ L L E + GLI+LTGG GP++R + AE L+ + F R Y Sbjct: 122 DAGETPQVTLHDL-ETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAY 180 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V LQRH + R E +V LAY H+LPLVATN F YEAHD L+ +A V+Q Sbjct: 181 VELQRHGEENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQ 240 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R+TP+HY K+ +EM +F+DLPEA +NT+ +A+RC+F++ + I Sbjct: 241 DERRRLTPEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMV-----AKRKPILPPFRM 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSG 355 E LR GL RL + G ++ YR+R+++E+ VI +M F G Sbjct: 296 DGLTEAEVLRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPG 355 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+DFIQW+K ++IPVGPGRGSGAGS A+ALTITD+DPLR+ LLFERFLNP+R+SM Sbjct: 356 YFLIVSDFIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSM 415 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQDRR+E IRYVQ+KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+ Sbjct: 416 PDFDIDFCQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRI 475 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 CK++PN+PA PV+ QA+ + +EAR D +V LL++ KLEGLYRHASTHAAG+VI Sbjct: 476 CKMVPNNPASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVI 535 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDR L +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++ ++ + + Sbjct: 536 GDRSLDELVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKG 595 Query: 595 -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VDLS +P DD TY LLT G+FQLESSGMR L M+P+ +ED+IA+V+LYRPG Sbjct: 596 LDVDLSALPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNQLEDLIAVVALYRPG 655 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I Y K+G E+ +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL AD+L Sbjct: 656 PMDQIPRYIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLL 715 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKKIKEEM+ Q++ F+ GA + A IF+ +AKFA+YGFNKSHAAAYA+I+ Sbjct: 716 RRAMGKKIKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIA 775 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 YQTAW+K ++P EF+AA+MT EM N +K+ F Q+ + I+++PP +N F V Sbjct: 776 YQTAWLKANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKL 835 Query: 833 ----NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + + Y+LAA+K VG R I E P+ L DF R+D+K+LNRR +E++V Sbjct: 836 ADGSHAVRYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVR 895 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AG D +R ++ ++ + + +Y + R + ++ G + LE S + Sbjct: 896 AGVFDSLEKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLG---GNVAPPPKLENASDWS 952 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSK 1004 + E +GFY S HPLD + L+++G+ E ++ + ++LA ++SK Sbjct: 953 PHEKLTQEFDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSK 1012 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q++ + KGSR +VT S+ + YE F Sbjct: 1013 QERTSAKGSRYAFVTASDSSGMYEVTCF 1040 >gi|206890698|ref|YP_002248167.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742636|gb|ACI21693.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1135 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 408/1045 (39%), Positives = 622/1045 (59%), Gaps = 45/1045 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL +H+ YSLL+GA+ +N ++++ PA+AITD NLF +EF +KA Sbjct: 1 MSMS-EFVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AG++PIIGC++ + Q T K P + LLV EGY+ L LV+R YL Sbjct: 60 AGVKPIIGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYL 119 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI + L +GL+ L+G G I + + + AE T K +FG+ Sbjct: 120 -EGFYYKPRIDMELLSMY-NKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNN 177 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ +Q + ++ +++L+ ++P+VATN+ +L + D AH++L+ + + Sbjct: 178 FFLEIQSNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTI 237 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R + + + Y K+ EM S F ++PEAL+NT++IA RC+F L++ LP++ + Sbjct: 238 KDEKRLKFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQ 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E L+ A GL+ R G A+DY +RL+ EL VI M F+ YFLI Sbjct: 298 G----YTAEEYLKKLAQEGLKERFK------GNVAEDYIKRLEEELKVITEMGFASYFLI 347 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +A++ +IPVGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLNP+R+S+PD D Sbjct: 348 VWDFINYARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDID 407 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC+DRR+EVI+YV YG +RVA IITFG++ A+A +RDVGRAL +PY+ VD++ K+I Sbjct: 408 VDFCKDRREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMI 467 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P A P +A+ + R +E + +V L++I+ +LEGL RHAS HAAG+VI PL Sbjct: 468 PF--ACPSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPL 525 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 L+P+Y++ + ++QF+MK +E GL+KFDFLGLKTLT++ ++ ++ +G +DL+ Sbjct: 526 EDLMPLYKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGKDIDLN 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ETY LL++ T G+FQLES GM++ L+ M+P ED+IALV+LYRPGP+ + + Sbjct: 586 NIPLDDSETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSGM 645 Query: 660 VYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 V + K K + P + +L ET GVI+YQEQVM+IA ++G+++ +ADVLR+AM Sbjct: 646 VDDFIKRKKGLVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQADVLRKAM 705 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKI E M KE FI GA KNGI A ++F ++A F +YGFNKSH+AAYA ++Y TA Sbjct: 706 GKKIPELMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAYLAYITA 765 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP EF AA+++ EM + KI KF + + + I+I P +N F V + I + Sbjct: 766 YLKAHYPQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTVKEKFIRF 825 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+KGVG + + I+ K F S++DF +R+D++K+N++V+ESL+ AGA D Sbjct: 826 GLEAVKGVGGSALQCILNEREKKKFTSIDDFLTRLDTRKVNKKVIESLIKAGAFDSLYP- 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 +Y + F K + T E +++ E+ Sbjct: 885 ------------QYTPNQARAIAMHELLSFKGVKSSRGLFFTHENIEAWDNNTVLSEEKS 932 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---------RLAAMVVSKQQKK 1008 LGFY +GHP+ +P+L K+ + + T + + ++A +V + K Sbjct: 933 SLGFYLTGHPMKPLRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKIAGIVEEIKSKA 992 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 KG ++T + E +P Sbjct: 993 KEKGVT-AYITIEDETGRVEVVIYP 1016 >gi|302873297|ref|YP_003841930.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] gi|307688537|ref|ZP_07630983.1| DNA polymerase III DnaE [Clostridium cellulovorans 743B] gi|302576154|gb|ADL50166.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B] Length = 1204 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 374/1062 (35%), Positives = 593/1062 (55%), Gaps = 54/1062 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+G+ ++ ++ + A+AITD ++ +EF + A Sbjct: 1 MSR--DFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKE 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G ++ + + K +VLLV + GY L+++VS + D Sbjct: 59 VGIKPILGSEIYVASKSMHIKEQGRKN---DTHHLVLLVKNSTGYDNLMKIVSAASI-DG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ +L++ +EGLI L+ G + ++ +A++ L +K+ F D Y+ Sbjct: 115 FYYKPRVDHDFLKK-HSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYL 173 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++ ++ ++ ++PLVATN+ ++++ED AHD+L+ + + +K Sbjct: 174 ELQNHGMREQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEK 233 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R Y++++ EM +F + EAL+NTV+IA +C+F + H LP F Sbjct: 234 GRMSYQPEQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLP---- 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +++ LR+ GL + ++ + RLD+EL++I M + YFLIV D Sbjct: 290 SEQDHFQYLRDTCYKGLAELYEE-------ITEEIKVRLDYELDIIKTMGYVDYFLIVWD 342 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A +N IP GPGRGS AGS+ A+ L IT IDP+++SLLFERFLNP+R+SMPD D DF Sbjct: 343 FIRFANENGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDF 402 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +KYG+E V+QIITFG++ A+ +RDVGRA+ YS+VD + K+IPN Sbjct: 403 CYERRQEVIDYVVDKYGYESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNM 462 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ +S + A + V L+++S+ LEGL RH STHAAG+VI +PL Sbjct: 463 LGINIE-RALEVNSELKAAYEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSY 521 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 VP+ ++ + VTQ+ M +E+ GL+K DFLGL+TLT+L+ ++D + Q + +++DL I Sbjct: 522 VPLQKN--DEAIVTQYTMGTLEELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKI 579 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D + Y ++ T+G+FQLES+GM ++ ++PD +EDIIA +SLYRPGP+ I Y Sbjct: 580 DDADPKVYTMVGEGKTVGVFQLESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRY 639 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K KI P ++P+L T GV++YQEQVM+I + L+GYS+ +D++RRAM KK Sbjct: 640 IEGKRNPAKIRYETPELEPILGVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKK 699 Query: 722 KEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 + M+++++ FI G +NGIS A IF+ + FA Y FNKSHAAAY Sbjct: 700 HKVMEEERQNFIYGIVDKDGNIEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAY 759 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 AV++YQTA+M +YP EF+AA + M N EK+ + + A++ +I+++PP +N F Sbjct: 760 AVVAYQTAYMMCYYPTEFIAAMLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFT 819 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V +I + +A+IK VG I++ + F DF ++D +N+R ESL+ + Sbjct: 820 VNKEKIRFGMASIKNVGGNVTDSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKS 879 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSV 945 GA D FG R QLL ++ + +K N+ F ++ T KI K Sbjct: 880 GAFDEFGVYRSQLLAIMEKVLDGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKE 939 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT--------------IR 991 E+ + G Y SGHPLD Y L + E V+ Sbjct: 940 FEKKYILAMEKEMTGLYLSGHPLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRD 999 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + + +K TR + + ++ + E FP Sbjct: 1000 GDKVIIGGTIAEISKKITRNNAMMAFLRLEDLYGSVEVIIFP 1041 >gi|216263511|ref|ZP_03435506.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1] gi|215980355|gb|EEC21176.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1] Length = 1161 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 390/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + GL+ + R +EL+VI RM F GYFLIV Sbjct: 310 FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHA AY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAVAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + + + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + + +A + + ++ + ++ S + +T++ + R+ Sbjct: 958 LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|225847875|ref|YP_002728038.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense Az-Fu1] gi|225643592|gb|ACN98642.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense Az-Fu1] Length = 1172 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 365/1051 (34%), Positives = 566/1051 (53%), Gaps = 32/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA+ + ++ K A+ +TD N+F A+EF Q+ + G++P Sbjct: 4 DFVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + K ++L G++ L++L S Y + Sbjct: 64 IIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYT-EGFYYK 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ EGLI T G I + A+K K +FG+ LY +Q Sbjct: 123 PRIDWELLEKYH-EGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQV 181 Query: 189 HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV----VSQK 243 + + +++LA + +V TN+S +L+ ED AHDV+ A+ + Sbjct: 182 NGLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEKG 241 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECD 301 +V H+ E + + P++ + Sbjct: 242 KAFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGIE 301 Query: 302 DIQKEE-ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + +E+ + + GLE RL + Q+YR+RL +E++VI M F+ YFLIV Sbjct: 302 NPTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYFLIV 361 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AK N IPVGPGRGS GS+ AY L IT+IDPL+ L+FERFLNP+R+SMPD D+ Sbjct: 362 QDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDIDV 421 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + R++VIRYV++KYG + VAQIITF +++K +RDV R L PY + D++ K+I Sbjct: 422 DFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKMIL 481 Query: 481 NDP--AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 P +++ + + FR+ DP V +LL++++KLEG RH HAAGIVI Sbjct: 482 PGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIAPG 541 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596 PL + VP+YRD + TQF MK +E+ GL+K DFLGLKTLT L + +R +++ Sbjct: 542 PLDEYVPVYRD-KDGNKATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGIEI 600 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + +P DD Y LL + T G+FQLES GM+ L ++P ++IIA+++L+RPGP+ Sbjct: 601 NYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALFRPGPLM 660 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V Y RK+G++ I + +LKET G+I+YQEQ+M ++ +LSG+S++EAD LR Sbjct: 661 SGMVDEYIERKHGRKPIEYPFEEVKEVLKETYGLIVYQEQIMFMSNILSGFSMAEADTLR 720 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +A+GKK E M K K RF+ GA + G + +++ + KFA Y FNKSH+ AYA ++Y Sbjct: 721 KAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNKSHSTAYAYLTY 780 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 TAW+KT+Y EF A ++ E+++ + + D F I+++PP VN +F + Sbjct: 781 WTAWVKTYYTDEFFAVKLSTEVNDSKFLNLLI-DMENFGIKLLPPDVNKSMAEFYIESPK 839 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LA IK VG ++A+ I++ + F + DFC R+D+K N+RVLESL+ AGA D Sbjct: 840 NIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRVLESLIKAGAFD 899 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEK--FSVENSS 949 R LL ++D Q +++ ++FA + K T E Sbjct: 900 FEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTYEDTGIKKLTER 959 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN------IRLAAMVV 1002 + + E+ VLGFY SGHP++ YK L+ + E + G ++ A +V Sbjct: 960 EKLKYEKEVLGFYLSGHPINAYKKELKGK-VAKIGEIYDLVFSGKRPEGDLKVKFAGVVD 1018 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + KKT+ G+ + +FS+ + + FP Sbjct: 1019 EIKLKKTKSGNTMMMFSFSDETGQIDCRAFP 1049 >gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516] Length = 1166 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 491/1057 (46%), Positives = 679/1057 (64%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F+HL+VH+ YSLLEGA+ + ++ A + PA+A+TDTNN+F ALEFS+ A Sbjct: 1 MTSASRFIHLRVHTEYSLLEGAVPVKSLPGLAAGAEMPAVAVTDTNNMFCALEFSEYAAK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQLD+ +T + +VLL + GY L++L S YL + Sbjct: 61 AGVQPILGCQLDVTY-----VTPEPGAKPEAPAPVVLLAQSEAGYMNLMKLNSCAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + ++ L L EGLI LTGG GP+ R A+ + K ++GDRLY+ Sbjct: 115 RAEWPQVTLQELAA-HGEGLICLTGGPDGPVGRLLRAGQRARAQALVERLKAIYGDRLYM 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY ++PLVATN+ F + YEAHD L+ +A Sbjct: 174 ELQRHPGEAGAPEAERLSERGHVEMAYALDIPLVATNDVYFPKTDLYEAHDALICIAEGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q R R+TP +Y K++ EM ++F+DLPEALENTVEIARRC++ + A Sbjct: 234 YVDQQAPRRRLTPQNYFKSQQEMATLFADLPEALENTVEIARRCAYKAEKRA-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A GL RLA I ++Y++RLDFEL++I M F GYF Sbjct: 286 PILPRFADDEVEELRRQANEGLAARLA--VIPHAAPVEEYQKRLDFELDIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K Sbjct: 404 FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPYMQVDKLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R REA + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREAAKNEEVVGRLLSYGQQIEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 524 RPLDELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRNL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++LIP DD TY L + T+ +FQ+ESSGM AL M+P Sbjct: 584 HEAADGSRLYEPAPGAENQMNLIPLDDERTYELYSKARTVAVFQVESSGMMDALRRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +HP +D +L ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPKYCEVKNGISDRDKLHPSVDHILDETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKKI+E MD ++ +FI+GA NG+ A+ ++ LL KFA+ Sbjct: 704 AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFIAGAKANGVDDKKALEVWNLLDKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFQELKKGLGLPWD 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V + R+ Y+L A+K VG + I+EA KPF ++ DF R D K++ Sbjct: 824 PPCVNRSEATFDVQEGRLLYALGALKNVGVEAMKLIVEARDGKPFSNVYDFARRTDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +SLD + Y+ V + R + ++F G + Sbjct: 884 GKRSLEMLARAGAFDELDPNRRRVFESLDALTAYSAAVHEQRQSNQSSLFGD-GGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 L + R E + +GFY SGHPLD Y L++ + +E +A G + Sbjct: 943 PRLPGVPDWLPAERLAEEFKAVGFYLSGHPLDDYLAPLKRKQVLTLDEVMAKAAGGACIV 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A V S+Q++K+ +G+R +V S+P +YE F Sbjct: 1003 KMAGTVASRQERKSARGNRFAFVQLSDPTGQYEVTMF 1039 >gi|116327113|ref|YP_796833.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116119857|gb|ABJ77900.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1176 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 373/1044 (35%), Positives = 593/1044 (56%), Gaps = 31/1044 (2%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 ++ ++ F HL +H++YS+L+GA+ + ++ + + ++A+TD N+F A+EF Sbjct: 1 MSLIMQ---DFAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYN 57 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 +A GI+PIIG + + + + T K + ++LL EGY+ LI L S+ Y Sbjct: 58 EATKQGIKPIIGSEFYVSP-NRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSY 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179 + + RI L + GL+ LT +G ++R + + ++F Sbjct: 117 T-EGFYKKARIDYDLLAQ-HNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK 174 Query: 180 DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ +Q H ++ Q+ +PLV TN+S FL ++D EA D+L+ + Sbjct: 175 EDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQK 234 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ + Y+K+ EM +F ++PEA NT+EI+ + LQ +LP F Sbjct: 235 RITDPMEFGFNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVP 294 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D ++ L G+ + + + + R+ FELN I MKF+GYFL Sbjct: 295 EGYD----ADSYLEKLIWEGIGRKYPN-------LSPEIKDRVVFELNTIKNMKFAGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR MPD Sbjct: 344 IVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDI 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K Sbjct: 404 DTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKA 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 PN + +A+ S + D ++ I+Q+LEG YR HAAG+VI P Sbjct: 464 FPNKLGMSI-AEALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYP 522 Query: 539 LSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 L ++VP+ + P VTQ++ +E GLIK D LGLK LT L ++ + +R Sbjct: 523 LEEVVPLSTVAEKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRR 582 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 V++DL IP++D TY LL TLGIFQLES+G+ + Q + ++I+AL++LYRP Sbjct: 583 GVRIDLDEIPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + Y +RK+G++++ HP +P+LKET GV +YQEQVM I++++ G+S+ ++ Sbjct: 643 GPMGEGMLDEYLDRKSGRKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDS 702 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 DVLR+AM KK + M+K K +F+ GA K GI + +A ++FE L +F YGFNKSH+ AYA Sbjct: 703 DVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYA 762 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+YQTA++K +Y +E+L A + + I K+ +AR+ I+I+ P V+ F V Sbjct: 763 IITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNV 822 Query: 831 GDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D+ I + L+A+KGVG T A I+EA F +L+DF +D++ +N++V E+L+ A Sbjct: 823 IDDATIRFGLSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQA 882 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD FGY+R L +S+D+I +AQ ++ ++F + +F+ + + Sbjct: 883 GALDSFGYTRKCLFESVDSILTFAQREQERTNEGQFSLFGVGESSFTLNLPKDAL-EWEI 941 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ + G Y SGHPLD Y+ L+ + E+ G+ + +A ++ SK K Sbjct: 942 DEKLRREKAIAGLYLSGHPLDKYEKQLKSLRTIPIEKFDNLKSGSKVEVAGIISSKNIKL 1001 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 +++ + E E F Sbjct: 1002 SKRNEEFANFKLEDRTGEIECVAF 1025 >gi|111115407|ref|YP_710025.1| DNA polymerase III subunit alpha [Borrelia afzelii PKo] gi|110890681|gb|ABH01849.1| DNA polymerase III, subunit alpha [Borrelia afzelii PKo] Length = 1161 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + GL+ + R +EL+VI RM F GYFLIV Sbjct: 310 FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + + + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + + +A + + ++ + ++ S + +T++ + R+ Sbjct: 958 LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01] gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01] Length = 1176 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 423/1068 (39%), Positives = 619/1068 (57%), Gaps = 60/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FVHL++H+ YSL++G + + ++ +A PA+A+TD +N+ S ++F + A Sbjct: 1 MTQ--AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI G + + + + + LL A+GY+ L EL+SR + Q Sbjct: 59 AGVKPICGADIWMASAEE----------DGPLTRLTLLAMNAKGYRNLTELISRGWAEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I W+++ EGLI L+G G + +A +AE RL + +F DR Y+ Sbjct: 109 SNDLVIIQRDWVKD-AAEGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYL 167 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR R D V LA E PLVATN+ F+ ++D+EAH+ + + + Sbjct: 168 EVQRTSRVGDEEYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + YLK+ EM +FSDLPEALENTVEIA+RC+ +Q+ LP F Sbjct: 228 RRPRNYSDQQYLKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMG 287 Query: 303 IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFL Sbjct: 288 I----DDYLRHASFEGLEERLEVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 344 IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV RA Y DRL K+ Sbjct: 404 DVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKM 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + ++ RE D + ++S KLEG+ R HA G+VI Sbjct: 464 IPFEVGMTLEKAYEMEEP-LREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTK 522 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 L+ P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +++ + + + Sbjct: 523 LTDFSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGA 582 Query: 597 ------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++ IP DD +TY +L T +FQLES GM++ ++ ++PDC+ED+IALV+L+ Sbjct: 583 SDEELVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALF 642 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGP+ + + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ++ Sbjct: 643 RPGPLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMG 702 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L +AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNK Sbjct: 703 GYTLGQADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNK 762 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R ++I PP VN Sbjct: 763 SHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNV 822 Query: 824 PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F V D RI Y L A+KGVG I+E A+ PF L DFC+RVD +++N+R Sbjct: 823 SEFKFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRT 882 Query: 882 LESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 LE+L+ +GALD G +R LL S++ + A+ ++ + H ++ Sbjct: 883 LEALIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDL 942 Query: 927 FAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F + K R + E+ LG Y SGHP+D Y+ +R+ + Sbjct: 943 FGGLFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIV 1002 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E +A M+V+ + K +KG ++G++T + + EA+ F Sbjct: 1003 ELKPARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048 >gi|119953364|ref|YP_945573.1| DNA polymerase III subunit alpha [Borrelia turicatae 91E135] gi|119862135|gb|AAX17903.1| DNA polymerase III alpha subunit [Borrelia turicatae 91E135] Length = 1150 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 393/1035 (37%), Positives = 591/1035 (57%), Gaps = 23/1035 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ FVHL VHS YSLL+GA + +I+ K IA+TD NLF A++F ++A Sbjct: 1 MDLKVKFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAMKFYREAKG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + K + ++ L GY+ L++L S YL + Sbjct: 61 AGIKPIIGMEAYMS--STSKHIKKNDELGRPYYHLIFLAKNELGYKNLLKLTSVSYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI +++ +EGLI + G I + N A+ +L FK +FGD Y+ Sbjct: 118 FYYRPRIDKEDIEKY-SEGLICTSACIGGIIPQLILANKFDDAKNEILWFKSVFGDDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH + ++V + + L +N+S ++++ED A D+++ + S Sbjct: 177 ELQRHGIKQQDIVNEKLVAYSRELNVSLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDP 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301 +R ++ T + YLK + EM +F DLPEAL NT++IA +C+ F ++ PI P + Sbjct: 237 NRLKMETDEFYLKTQEEMCKLFRDLPEALANTLKIAEKCNEFEIKFPGPIFPEYQVPSEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D L + GL+ R A + R +EL+ I +M F YFLIV Sbjct: 297 D---TLSQYLEYLTLEGLKFRYAN-------VTDSIKDRAFYELSTIIKMGFEAYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+++ + L KLIP+ Sbjct: 407 FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFTESNELTKLIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + D + + L+E + LEG+ R+ STHAAGIVI PL+ Sbjct: 467 GP--KVSLREVFKDKALKAYLNKGVVYNELMEAALVLEGMNRYVSTHAAGIVIARTPLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + + TQ+ M +E GL+K DFLGLKTLTL++ + + + ++ I Sbjct: 525 YVPLYKDYKQNTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIRITNPNFSIANI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D +T+ +L+ + +FQ ES GM+Q L +PD IED+IAL +LYRPGP+ I + Sbjct: 585 SDSDVKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 645 IAAKTGTKRIRYPHPDLKEVLKPTYGVIVYQEQVMEVARIIGGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM+K K FI GA G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N EK+ + ++A+ I ++ P +N +F V I Y L Sbjct: 765 NYPENFMAANLTNEINNTEKLSYYIEEAKSMGINVLKPDINQSFKEFSVVGLNISYGLNG 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I+ + + S EDF RVD K +N++ LE+ + +G D G +R Sbjct: 825 IKNIGGLIVDLIITERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L ++LD + + ++ ++F + F + E+ + Sbjct: 885 LFENLDKLIDFVIKDRNDKKLGQNSLFGSIGSQDAIQQSFNYHVFEEYSYPELLRFEREL 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017 LGFY SGHPLD YKP L + E +A + ++ A + + +T++ + R+ + Sbjct: 945 LGFYVSGHPLDHYKPELERFTNFNVLEDLAVKKDTTVKFAGSLNVVRVIRTKRNNARMAF 1004 Query: 1018 VTFSEPAKEYEANFF 1032 + E + F Sbjct: 1005 GVIEDFKGEMDIIVF 1019 >gi|238917602|ref|YP_002931119.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750] gi|238872962|gb|ACR72672.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750] Length = 1188 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 354/1077 (32%), Positives = 569/1077 (52%), Gaps = 61/1077 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+G+ + I + ++AITD ++ +EF + A AGI+P Sbjct: 2 SFTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC++ + +VLL GYQ L+++VS+ + + Sbjct: 62 VLGCEVYVAPGSRFDK--GAGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFT-EGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+E EG+I + +G + R + A L + +FG ++ LQ Sbjct: 119 RVDKEVLREYH-EGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQD 177 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +++ Q++++ + LV TN+ + +D +AHD+L+ + +S ++R R Sbjct: 178 HGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM +F PEA+ENT +IA RC+ ++ LP F + K Sbjct: 238 YEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVP--EAYGKN 295 Query: 307 EENELRNKAVAGLEVRLAQG------------------------AIAKGYHAQDYRQRLD 342 L GL+ R I + + D QRL Sbjct: 296 SWVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLS 355 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL+VI M + YFLIV D+I +AK ++IPVGPGRGS AGS+ +Y L IT +DP++++L Sbjct: 356 YELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNL 415 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 +FERFLNP+R+SMPD D+DF + R +VI YV KYG E V QIITFG++ A+A ++DVG Sbjct: 416 VFERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVG 475 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA-------IADDSRFREARLADPSVDRLLEIS 515 R + +PY+ VD + K+IP + I ++ F+ AD +V L++ + Sbjct: 476 RVMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKA 535 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 ++LEGL RHAS HA+G++I + + + VP+ ++ VTQF +E GL+KFDFLG Sbjct: 536 KRLEGLPRHASVHASGVLISQKDVGEYVPVAVGA-DNVKVTQFEGPTLEHLGLLKFDFLG 594 Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 L+ LT++Q++ Q + IP++D + ++ GIFQLES GM+ ++ + Sbjct: 595 LRNLTVIQQTEKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKEL 654 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +PDC+ED+IA +SLYRPGP+D I Y K I P ++P+L+ T G ++YQEQV Sbjct: 655 KPDCLEDLIAGISLYRPGPMDFIPQYIKGKENAGNITYECPQLEPILEPTYGCMVYQEQV 714 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAV 747 MQI + L+GYS +D +RRAM KK + M+++++ F+ G KNGIS+ A Sbjct: 715 MQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGISEQTAN 774 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 I++ + FA Y FNKSHAA YAV++YQTA++K H+PV+++A ++ D K+ ++ Sbjct: 775 KIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSKVAEYIL 834 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 AR+ I I+P VN DF V I + A+K +G T I+E + F S++ Sbjct: 835 AAREMGISILPVDVNKSVADFGVEGKNIRFGFNAVKSMGRPTITAIIEERTNNGDFHSMQ 894 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +R+ + +N+R +E L+ AGA D FG +R ++ + + A K+ + ++ Sbjct: 895 DFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDAISGQMSL 953 Query: 927 --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 FA E+ S ++ + E E+ VLG Y +GHPLD Y + K Sbjct: 954 FDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYTGMWEKHISARST 1013 Query: 985 ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + G+ + ++ + + T G ++ ++T + E FP Sbjct: 1014 DFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEVIMFP 1070 >gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 1154 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 414/1042 (39%), Positives = 592/1042 (56%), Gaps = 33/1042 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S F+HL+VHS +S+++G + IL K+AA + PA+AITD N+ ++F +A GI Sbjct: 2 SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + + LL EGY+ + L+S+ YL Sbjct: 62 KPIIGTDFWVTNE----------AFGDEPFRLTLLAMNNEGYKNITILISKAYLRGHLAH 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +WL E EG+I+L+G G + N++++ + L ++ F DR Y+ L Sbjct: 112 RAVIDQAWLAE-HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELI 170 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + V+LA LP+VATN F+ E +EAH++ + + + RP Sbjct: 171 RTGRQGEEDYLHHAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRP 230 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL+ EMV +FSD+PEA+ENTVEIA+RC+ ++++ + + Sbjct: 231 KRYSEQQYLRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNE-----YFLPQFPTGGM 285 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ L + GLE RL + +Y RL EL VI +M F GYFLIV + Sbjct: 286 TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 346 FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP D Sbjct: 406 CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A + + E +D V L+++++ LEG+ R+A HA G+VI ++ Sbjct: 466 PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I Sbjct: 525 SPLYCDDEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P +D +++ L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V Sbjct: 585 PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644 Query: 661 ------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD+LR Sbjct: 645 NFIDRKHGREEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ F GA N I +A+ IF+L+ KFA YGFNKSH+AAYA++SY Sbjct: 705 RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QT W+K HYP EF+AA M+ +MDN +KI + + I+I+PP +N F V Sbjct: 765 QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSKG 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 RI Y + AIKGVG I+EA F L DFC++VD K++N+RVLE LV AGA+D Sbjct: 825 RIVYGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVR 951 G R L+ +L A K + ++F + V Sbjct: 885 NLGPHRATLMATLPEALAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVW 944 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E E+ LG Y +GHP++ Y LR + T + +V+ + ++ Sbjct: 945 LEGEKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKR 1004 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R VT + + + FFP Sbjct: 1005 GRRWAIVTLDDKSARMDVRFFP 1026 >gi|315924608|ref|ZP_07920827.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315622138|gb|EFV02100.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 1178 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 405/1055 (38%), Positives = 586/1055 (55%), Gaps = 48/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VHS YSLL+G +++ + A+A+TD LF +EF + A GI P Sbjct: 4 SFTHLHVHSEYSLLDGFGRISDYVQTAKEMGMNALALTDHGVLFGGIEFYKACVARGINP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + L + ++LL EGY+ L ++VS+ ++ D Sbjct: 64 IIGCEVYVAPRTLLDKEAGKDSRP---YHLILLAENNEGYRNLSKIVSKGFI-DGFYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L+ EG+I L+ +G I RA AE T+ +FG D ++ +Q Sbjct: 120 RIDHDTLRRY-REGIICLSACIAGEIPRAVLEEQPARAEALCETYIDIFGKDHFFLEIQD 178 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR + + LA + + L ATN+ ++ ++DYEAHDVL+ + + V + DR R Sbjct: 179 HRLSKEAKVREFLFHLADKYGIGLAATNDCHYVRQDDYEAHDVLLCIGTGSTVDETDRMR 238 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 YLK+ EM ++F D PEAL NT +IA RC + + LP+F E E Sbjct: 239 YANDQFYLKSPEEMAAMFPDHPEALANTQKIADRCHVTFDLESAHLPKFELPEGYT---E 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + +R+ AGL + R+R+D+EL I M F YFL+V DFI + Sbjct: 296 AGDYVRHLCEAGLAK-------RYDTITPEIRERMDYELKTIHTMGFDDYFLVVWDFIHY 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK +NIPVGPGRGS AGS+ AYAL IT +DPL+++LLFERFLNP+R++MPD D DFC +R Sbjct: 349 AKTHNIPVGPGRGSAAGSLAAYALDITTLDPLQYNLLFERFLNPERVTMPDIDCDFCYER 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG +RVAQIITFG++ A+ A+RDVGR L +PY+QVD++ K IP P Sbjct: 409 RQEVIDYVIRKYGKDRVAQIITFGTMAARGAVRDVGRVLGIPYAQVDKVAKEIPMRPGQS 468 Query: 487 VSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VS+ I ++ ++ +D V RLL +S+K+EGL RHASTHAAG+VI D PL++ VP+ Sbjct: 469 VSIHEAIEENPDLKQMADSDAEVRRLLAMSEKMEGLARHASTHAAGVVISDAPLTEYVPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 YR+ D TQ+ M +E GLIK DFLGL+TLT++ ++ + + RG+ VD+ I Sbjct: 529 YRN--GDAITTQYTMNLLEDLGLIKMDFLGLRTLTVIADAVANIQESRGIAVDIDHIDMH 586 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D Y ++ + LG+FQLES GM + +QP EDIIA +SLYRPGP+D I Y Sbjct: 587 DAGVYEMIASGDCLGVFQLESRGMIAFMRELQPQTFEDIIAGISLYRPGPMDQIPRYIAN 646 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K E I H + P+L T G ++YQEQVMQI + L+G+S+ +D++RRAM KK E Sbjct: 647 KKDPEHIAYTHEALRPILNVTYGCMVYQEQVMQIFRDLAGFSMGRSDLVRRAMSKKKSEV 706 Query: 725 MDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 MD + E FI GA GI + A I+E + FA Y FNKSHAAAYAVI Sbjct: 707 MDAEGEVFIHGERDTDGQVVVPGAVAKGIPEAAARRIYEEMKDFAKYAFNKSHAAAYAVI 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTAW+K HYP EF+AA M+ MDN +KI ++ + ++ I+++ P VN F V Sbjct: 767 AYQTAWLKRHYPAEFMAALMSSVMDNEKKISQYIDNCKRRGIRVLLPDVNISRRKFSVEI 826 Query: 833 NR-----IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886 N + L AIKG+G I+ A + F DFC +VDS +N++ +L+ Sbjct: 827 NADGRENVRMGLGAIKGLGDKPIAAIVNARQTEGAFTGFRDFCEKVDSHAVNKKAAANLI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D G R +++ D I + +++R + ++ + T + Sbjct: 887 LAGAFDFLGIDRARMVLGSDLIVQQVAEEKQDRLSGQMSLLDMGELNAYKGDTFPEAPPF 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESVA--TIRGNNIRLA 998 + + + E+ VLG Y SGHPL+ Y IL YE+ +A G + + Sbjct: 947 SKAEKLAREKEVLGLYVSGHPLEHYVGILSSETNLNSGMMDSYEDLLASGIPDGGRVTVG 1006 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V + + T+ +++ ++T + E FP Sbjct: 1007 GLVDQLKVQLTKTNAQMAFLTLEDLYGRMEVVVFP 1041 >gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2] gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2] Length = 1160 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 425/1049 (40%), Positives = 617/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + + + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFHV----------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F + ++ Sbjct: 110 GAEGPVIDRDWLVEL-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA T LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEENYLHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +FSD+PEAL+NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL AQ Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVAKSREGLEERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 523 TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|225548617|ref|ZP_03769664.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a] gi|225370647|gb|EEH00083.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a] Length = 1161 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLEKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|220931162|ref|YP_002508070.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix orenii H 168] gi|219992472|gb|ACL69075.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix orenii H 168] Length = 1122 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 372/1040 (35%), Positives = 604/1040 (58%), Gaps = 38/1040 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA+ L +++ K P +AITD L+ A++F + A Sbjct: 1 MTAN--FVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQ 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + K + + ++L+ EGY L ++VSR +L + Sbjct: 59 YGIKPIIGCEVYLTPSSFRKKDTRER------YHLLLIAQNREGYHNLTKIVSRSWL-EG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L + +GLI L+ G I + + Q AE+ + ++ +FG + Y Sbjct: 112 FYYKPRVDKDLLYQ-HRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFY 170 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H D S++++L+ PLV TN+S +L+ ED HDVL+A+ ++ Sbjct: 171 LELQDHNLGDEKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTIND 230 Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R T + Y K+ EM S+F D+ + NTV+IA + +P F + + D Sbjct: 231 ENRLSFTGEEFYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGD 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K LR+K GL+ + + ++ R+RL +EL +I M + YFLIV Sbjct: 291 ---KTPVEILRDKCQQGLKEKGLEDN-------KEARERLQYELEIIEEMGYVSYFLIVW 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +A++ I VGPGRGS AGS+ +Y L IT I+PL++ L+FERFLNP+R++MPD DID Sbjct: 341 DFVNFARQKGIRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDID 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RRDE+I YV+ +YG E+VAQI TFG++ A+AA+RDVGR L +P +VDR+ K++ Sbjct: 401 F-DERRDEIIEYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMV-- 457 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P +A+ + + D V RLL+ + ++EG+ RH STHAAG++IG LS Sbjct: 458 -PGRVTIKEALKMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSN 516 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 ++P+ + + +TQF+M+ +E+ GL+K DFLGL+ LT++ K+L+ +++R ++D+ Sbjct: 517 IIPLQT--QDENIITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGREIDVDN 574 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D Y +L T G+FQ+ES + ++P+ D+IAL++L RPGP+ + +V Sbjct: 575 IPLNDDRVYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLV 634 Query: 661 YNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 K+ +I +HP ++P+L+ET G+I+YQEQVM+IA L+GY++ EAD+LRR MG Sbjct: 635 EQYIKSRHGEIEPSYLHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMG 694 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE + K++ERF+ GA KNGI K +A IF+ + FA YGFNKSH+ AYA+++YQTA+ Sbjct: 695 KKKKELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAY 754 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K +YP EF+AA ++ M+N++K+ ++ ++ ++ ++++PP VN +F D I + Sbjct: 755 LKANYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISF 814 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIK VG I+E + + SLEDF RVD+ ++N +V+ESL+ AG D F Sbjct: 815 GLKAIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNT 874 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R Q+L + I + +NR ++F+ ++ ++ I + R Sbjct: 875 YRSQMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLN 934 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y S HPLD +K + ++ G+ + + +VV ++ TR Sbjct: 935 QEKEYLGIYLSAHPLDPFKDKIDHFISTTSQDIKDYE-GDKVTIGGVVVDFKEHITRTNK 993 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 ++ ++T + + FP Sbjct: 994 KMAFLTLEDWLGNIKVVVFP 1013 >gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3] gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 1157 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + I+ K+ PA+A+TD NL ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+IG + + + S+ +L +GY L L+S YL Sbjct: 60 AGIKPLIGADFWVKVPG----------FDKDLCSVTVLAMDNDGYLNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL + ++GLI+L+GG G + RA + + + ++ F DR Y+ Sbjct: 110 IDDRAVIDHGWLAKY-SKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V+LA LP+VATN +F S + +EAH++ +A++ ++ Sbjct: 169 ELLRTGRPDEERYLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + + Y K+ +M +F D+PEA++NTVEIA+RC+ +++ Sbjct: 229 RRPKKYSAEQYFKSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + Y +RLD EL V+ +M F GYFLI Sbjct: 284 GDLSIEDFLVEVSEKGLEERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K++ Sbjct: 404 IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPIYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + H + +L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIERKHGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI + + + ++PP VN + Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLK 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D +I Y + AIKGVG I+ A D PF L DFC+RVD KKLN+R++E L+ Sbjct: 823 FNVDDEGKIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R +L +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRAAMLATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1161 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 427/1049 (40%), Positives = 613/1049 (58%), Gaps = 38/1049 (3%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + P F+HL+VHS +S+++G +N I+ AA+ PA+A+TD N+ + F A Sbjct: 1 MTMAEPRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAH 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GI+PI+G + Q + LL +GYQ + L+SR Y Sbjct: 61 GKGIKPIVGADFWV----------QSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRG 110 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + I WL + +G+I+L+GG G + + + Q+ E L ++ F D Y Sbjct: 111 HVQGRPVIDKEWLTD-HAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYY 169 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R D V +A ELP+VATN +FL+ ED++AH++ +A+ + Sbjct: 170 LELLRTGRPDEEVYLHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMD 229 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 K RP R +P YL+++ EM +F+D+PEALENTVEIA+RC+ +++ + Sbjct: 230 KRRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFP 284 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFL Sbjct: 285 TGDMTTEDFLVAKSKEGLEERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 345 IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L Y VDR+ KL Sbjct: 405 DVDFCMDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKL 464 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + +A + + E D V L++++++LEG+ R+A HA G+VI Sbjct: 465 IPPDPGMTL-AKAFEAELKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTK 523 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----G 593 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 524 ITDFAPLYCDDSGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGK 583 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 VD++ IP D +++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPG Sbjct: 584 PPVDIAAIPIHDKKSFDLLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 643 Query: 654 PIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V + RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+ Sbjct: 644 PLQSGMVDNFIERKHGKEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 703 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EM KQ+ F GA KNGI +AV IF+L+ KFA YGFNKSH+ Sbjct: 704 LGGADMLRRAMGKKNPAEMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHS 763 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTH+P EF+AA MT +MDN +KI + ++ + ++PP VNT Sbjct: 764 AAYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRY 823 Query: 827 DFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y + A+KGVG I+ A D PF L DFC+RVD KK+N+RV+E Sbjct: 824 RFSVNEDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEK 883 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943 L+ +GA+D G R L+ +L+ + A+ K + ++F D K Sbjct: 884 LILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTQEIDDVKKAFANV 943 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 V E E+ LG Y +GHP++ Y LR+ + T R A +V++ Sbjct: 944 PHWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIA 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+++G T + + + F Sbjct: 1004 ARSMVTKRGNKMGIFTLDDRSGRLDVTLF 1032 >gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73] Length = 1162 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 587/1030 (56%), Positives = 754/1030 (73%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PAIAITDTNNLF ALEFSQ A GIQ Sbjct: 16 PRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNNLFGALEFSQYCFADGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID D ++ K P+ S IVL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLAIDFDDENCNSSLAKLRHPSDYSSIVLFAASETGYAHLVRLVSRAYLDKNDND 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I L EG+I LTGG SGPI+ A + + A +RL KK+FGDRLYV LQ Sbjct: 136 LPHIKADLLL-THHEGIIALTGGRSGPINLALAEDRKERAVERLTYLKKIFGDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH YDR E+ +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS DR R Sbjct: 195 RHGSYDRKVEAVLIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSDPDRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305 VTPDHYLK++ EM+S+FSDLPEALEN+VEIA RC + PILPRFIE+ D + Sbjct: 255 VTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIEQSADTSSVLE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E EL N+A AGL++RL +A+GY DY QRL++E+++I RM+FSGYFLIV+DFI+ Sbjct: 315 SEAKELLNQAEAGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 375 WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P P Sbjct: 435 RREEVIRYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGS 494 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V QAI D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP Sbjct: 495 NVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP + Sbjct: 555 MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +++ T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN R Sbjct: 615 DEVTYAMMSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNIR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI +E Sbjct: 675 KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHKE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M +Q+ RF+SGA GI K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P Sbjct: 735 MQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KG Sbjct: 795 VEFLAASMTYDMTNTDKLNDFWREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL S Sbjct: 855 VGDVVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + N ++ +IF G I L + S + + + E + +GFYFS Sbjct: 915 LVTLNARALRILDNNSSGQIDIFGMIGGLKEPLI-LSQASPWSPAEKLHYEFQAIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPL Y+ +L K ++ ++ A+++G RLA +V+++ +KTR G ++G + FS+ Sbjct: 974 AHPLSEYQDVLIKKRVQTWKNFAASVKGGATAARLAGTIVARKIRKTRSGKKMGVIQFSD 1033 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1034 TSGQYEAVIF 1043 >gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25] Length = 1163 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 498/1058 (47%), Positives = 676/1058 (63%), Gaps = 49/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ ++ A PA+A+TDTNNLF ALEFS+KA Sbjct: 1 MAD-PKFIHLRVHTEYSLLEGAIHAGDLPKLAKAAGMPAVAVTDTNNLFCALEFSEKASK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPIIGCQ+D+ M + IVLL + GY L+ L S YL D+ Sbjct: 60 SGIQPIIGCQVDLTY-----MKVEAGKRAEDPAPIVLLAQSEVGYANLMALNSCAYL-DK 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ + L EGLI LTGG GP+ R A L ++ +RLYV Sbjct: 114 GGALPQVTTADLAA-HAEGLICLTGGPDGPLGRMIRAGQDNAARLLLERLAAIYPNRLYV 172 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH + E ++ AY LPLVATN++ F E YEAHD L+ +A Sbjct: 173 ELQRHPIEGGLPDAEAQTERPFIEWAYALNLPLVATNDAYFKDEGFYEAHDALICIAEGA 232 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R ++TP HY K+++EM ++F+DLPEALENTVEIA+RC+F Sbjct: 233 YVDQQEPRRKLTPQHYFKSQAEMATLFADLPEALENTVEIAKRCAFKAYKRD-------- 284 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR ++ AGL+ RL I Y RL+FE+N+I +M F GYF Sbjct: 285 PILPRFADDEVEELRRQSKAGLQARL--DVIPHAAELHVYWDRLEFEMNIIEKMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK IPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPD Sbjct: 343 LIVADFIKWAKDEGIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG +RVAQIITFG+L +KAA+RDVGR LQMPY QVDRL K Sbjct: 403 FDIDFCMDRREEVIQYVQGKYGRDRVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 462 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+ + D+ R RE +P V RLL+ +Q++EGL R+ASTHAAG+VIGD Sbjct: 463 MIPVEGVKPVSIAQALKDEPRLREEADREPVVARLLDYAQQVEGLLRNASTHAAGVVIGD 522 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++ + + G + Sbjct: 523 RPLDHLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVSLIRKSGRHL 582 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + IP DD ++Y L + T+ +FQ+ES+GM AL+ M+P Sbjct: 583 HEAADGTVLYTPPKGAEDDIGAIPLDDAKSYQLYSDAKTVAVFQVESTGMMDALKRMKPT 642 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG+ +I SIHP ID +L ETQG+I+YQEQVMQI Sbjct: 643 CIEDIVALVALYRPGPMENIPTYCEVKNGQREITSIHPTIDFILAETQGIIVYQEQVMQI 702 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFA 757 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F +GA + + I + A +F+LL KFA Sbjct: 703 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFTTGAKETHNIDEKKAGEVFDLLEKFA 762 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++ VEF+A M ++ +K+ + Q+ R+ + Sbjct: 763 NYGFNKSHAAAYAVVSYQTAWLKANHAVEFMAGVMNCDIHLTDKLAVYFQEVRRGLKLGT 822 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN F V D ++ Y+L A+K VG R ++EA A KPF +L DF RVD K+ Sbjct: 823 VPPCVNRSLATFDVVDGKLVYALGALKNVGVDAMRLVVEARAGKPFVTLFDFARRVDLKR 882 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE + AGA D +R ++L+SLD + Y+ V + R++ ++F E G Sbjct: 883 VGKRPLEMMARAGAFDVLDSNRRRVLESLDALVAYSVAVHEQRSSNQVSLFG-EGGDDLP 941 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--N 994 + L ++ R E + +GFY SGHPLD + P LR+ G+ E + Sbjct: 942 EPRLPNVPDWLAAERLGEEFKAIGFYLSGHPLDDHMPGLRRKGVLTLSEVEGKAQNGAFL 1001 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+A +V +Q++K+ +G+R + S+P+ +YE F Sbjct: 1002 ARMAGVVSGRQERKSARGNRFAFAQLSDPSGQYEVTIF 1039 >gi|312147881|gb|ADQ30540.1| DNA polymerase III subunit alpha [Borrelia burgdorferi JD1] Length = 1161 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC 17100] Length = 1151 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 536/1037 (51%), Positives = 710/1037 (68%), Gaps = 12/1037 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F+HL VHS+YSLLEGAL + ++ AAD QPA+AITD NNLF ALEFS+ Sbjct: 1 MTK-PGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GIQPIIGC L + T + G+ P +IVLL AEGY L+ L SR +L Sbjct: 60 EGIQPIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDS 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + +L E GLI L+GG GP DRAF ++ +AE RL T + FG+R Y Sbjct: 120 GDGSNPHVEVEFLVE-HAGGLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFY 178 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V +QRH +R E Q+++ AY + +PLVATN + F +EAHD L+ +A V++ Sbjct: 179 VEIQRHGLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAE 238 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR R++PDH+LK +++MV +F+DLPEA+ NT+EIA+RC+F + PI +D Sbjct: 239 DDRRRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPI-LPQFVAGSED 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E ELR +A+AGLE RLA +Y +RL+FEL+VI RMKF GYFLIV+ Sbjct: 298 THEAEAAELRRQAIAGLEHRLATIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVS 357 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGSV A++LTITD+DP+RF LLFERFLNP+R+SMPDFDID Sbjct: 358 DFIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRRDEVI+YV+ KYG RVAQIIT+G LQA+A LRDVGR LQMPY QVDRLCKL+PN Sbjct: 418 FCQDRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPN 477 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+PV+ +AI + + +EAR + V +LL+ +QKLEGLYRHASTHAAG+VIGDR L Sbjct: 478 NPANPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLV 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+YRD +SD+ VTQFNMKW+E+AGL+KFDFLGLKTLT+LQK+ L + G +DL Sbjct: 538 ELVPLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGH 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY +L T G+FQLES+GMR+AL ++PD DIIA+V+LYRPGP+DNI Sbjct: 598 LPLDDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIET 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y NRK+G E +HPL P+L+ET GVIIYQEQVMQ+AQ+LSGYSL EAD+LRRAMGKK Sbjct: 658 YVNRKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IK EMD Q RF+ GA + I + A IFEL+AKFA YGFNKSHAAAYA+I+YQTA++K Sbjct: 718 IKAEMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 ++ EF+AASMTL+M N +K+ F ++A++ + I+PPSVN V+F+ DN I Y+L Sbjct: 778 ANHAQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYAL 837 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AA+K +G A HI+EA DKP+ L DF R++ K LN+R +E+L AGA + +R Sbjct: 838 AALKNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRA 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ ++LD + ++ ++R E++F G+ + ++ L + ENE Sbjct: 898 KVAKNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGA 957 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGN-NIRLAAMVVSKQQKKTRKGSRI 1015 GFY SGHPLD + L +M + + + A G RLAA V +Q +K + G+R Sbjct: 958 AGFYLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRF 1017 Query: 1016 GWVTFSEPAKEYEANFF 1032 + FS+P ++EA F Sbjct: 1018 AFAGFSDPTGQFEAVIF 1034 >gi|224533626|ref|ZP_03674215.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a] gi|224513299|gb|EEF83661.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a] Length = 1161 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|218249957|ref|YP_002375087.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7] gi|226321885|ref|ZP_03797411.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26] gi|218165145|gb|ACK75206.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7] gi|226233074|gb|EEH31827.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26] Length = 1161 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|221218188|ref|ZP_03589654.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a] gi|225549589|ref|ZP_03770555.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a] gi|221192136|gb|EEE18357.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a] gi|225369866|gb|EEG99313.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a] Length = 1161 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|87124235|ref|ZP_01080084.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917] gi|86167807|gb|EAQ69065.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917] Length = 1173 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 385/1051 (36%), Positives = 583/1051 (55%), Gaps = 35/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AAGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERCKELGMPALALTDHGVMYGAIELLKLCKAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIEDPQQK----KERRYHLVVLAKNATGYRNLVKLTSLSHLRGMRGKGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I +A VA ++++FGD Y+ Sbjct: 118 FSRACIDKHLLKQY-SEGLIIATACLGGEIPQAILRGRPDVARDVARWYQEVFGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + L+ATN++ +L+ D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNVEIVRIAKELGIGLIATNDAHYLTRHDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+++ EM +F+D PE ++ + + ++ + + + + Sbjct: 237 RLRYTGTEYIRSEEEMGRLFADHLAPEVVQEAITTTALVADKVEDYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR + GL RL GA Y +RL +EL ++ +M F YFL+V D Sbjct: 297 EGHTPVSYLREVSECGLRERLELGADE--VIDPTYGERLTYELGIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFARDQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + + FR+ DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGEESPNPEFRDKYDKDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G ++D Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVETSLGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D +T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPAKDPDTFALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHQSLQPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVAEMQKHRSIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGTDFTPTGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ + AD PF SL D C R+ S LNRR LESL+ GA+D Sbjct: 834 LFGLSAVRNLGDGAIRQLIASREADGPFQSLADLCDRLPSSVLNRRSLESLIHCGAMDAL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTFSDKITLEK 942 +R QL+ LD + +A K+R + N+F S Sbjct: 894 APEANRAQLIADLDLLLDWASSRAKDRDSGQGNLFDLMASAADSAGSGPADLSLAPKAAP 953 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + S + E+ ++GFY S HPL KP R + G + AMV Sbjct: 954 VPDYHPSEKLRLEKELVGFYLSDHPLKQLKPPARLLAPIGLASLQEQADKAKVSAIAMVS 1013 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 ELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|225551916|ref|ZP_03772856.1| DNA polymerase III subunit alpha [Borrelia sp. SV1] gi|225370914|gb|EEH00344.1| DNA polymerase III subunit alpha [Borrelia sp. SV1] Length = 1161 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIRQSFNYQAFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1] gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1] Length = 1162 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 585/1030 (56%), Positives = 745/1030 (72%), Gaps = 8/1030 (0%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+VHS+YSLLEGAL + I+ +D PA+AITDTNNLF ALEFSQ + GIQ Sbjct: 16 PHFIHLRVHSAYSLLEGALKIPQIIQHAISDHTPAVAITDTNNLFGALEFSQYCFSYGIQ 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 PIIGCQL ID D K P+ SIVLL ++ GY L+ LVSR YL Sbjct: 76 PIIGCQLTIDFGDGNDNPRLVKWRHPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKCDTD 135 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I WL EG+I+LTGG GPI+ + + A +RL+ KK+F DRLYV LQ Sbjct: 136 PPHIKADWLLS-HNEGIIVLTGGRGGPINFSLAEERKERAIERLIYLKKIFDDRLYVELQ 194 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 RH +D+ E+ +++LAY +E+PLVATN + FL+ E YEAHD LMAVA +VS DR R Sbjct: 195 RHGSFDQKVEAALIELAYAYEIPLVATNEAFFLNREGYEAHDALMAVAEGQIVSNPDRKR 254 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305 VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC PILPRFIE+ D + Sbjct: 255 VTPDHYLKSQEEMVALFSDLPEALENSVEIALRCHTATPTRKPILPRFIEQSVDLNFTLE 314 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E+ EL N+A AGL++RL +A+GY DY QRLD+E++VI RM+FSGYFLIV+DFI+ Sbjct: 315 AEDRELLNQAKAGLKMRLKTIGLAEGYTITDYEQRLDYEISVITRMQFSGYFLIVSDFIK 374 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK ++IPVGPGRGSGAGS+ AYAL ITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+ Sbjct: 375 WAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QV+ L KL+P P Sbjct: 435 RREEVIHYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVEYLTKLVPAAPGS 494 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V AI D+ +F E + DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L+P Sbjct: 495 QVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSELIP 554 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP + Sbjct: 555 MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSNIPLN 614 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY ++ T+GIFQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN R Sbjct: 615 DETTYAMMARGETVGIFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPIYNAR 674 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI E Sbjct: 675 KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHTE 734 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ RF++GA G+ K A IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H+P Sbjct: 735 MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAHHP 794 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLAASMT +M N EK+ F ++A + I+++ P V T F+VGDN IYYSLAAIKG Sbjct: 795 VEFLAASMTYDMMNTEKLNDFRREALRLGIKVIAPCVQTSHRVFEVGDNCIYYSLAAIKG 854 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG HI+ +K F LEDFC R+D + +N+R +ESLV AGA DCF +R LL S Sbjct: 855 VGEAVVDHIVACRGNKVFKDLEDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLLAS 914 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L + A + + ++ +IF + + L + S + + E + +GFYFS Sbjct: 915 LGTLHARALRILDDNSSGQTDIFGI-TSVLKEPLILSQASPWSLDEKLHREFQAIGFYFS 973 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 HPLD Y+ IL K I+ + ++ RLA VV+KQ +KT+ G ++G V FS+ Sbjct: 974 AHPLDEYQAILVKKRIQNWVNFANAVKAGATAARLAGTVVAKQVRKTKSGKKMGIVHFSD 1033 Query: 1023 PAKEYEANFF 1032 + +YEA F Sbjct: 1034 TSGQYEAVLF 1043 >gi|195941713|ref|ZP_03087095.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 80a] Length = 1161 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPIYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2] gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 1151 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 521/1036 (50%), Positives = 706/1036 (68%), Gaps = 15/1036 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL VHS+YSLL+G++ + + D AD QPA+A+TDT+N+F ALEFS K Sbjct: 1 MSQA-GFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGALEFSDKLAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPI+G +L ID D + P +VLL + GY+ L+ L SR +L Sbjct: 60 SGIQPIVGLELGIDFGDQDPTSRNAALAAPA--RVVLLATRERGYRSLMRLNSRAFLETP 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q I WL + T+ +I LTGG GPI A + R + FGDRLYV Sbjct: 118 VNQPPHIKFDWL-DGETDDVIALTGGPEGPISLAMLT-DPALGRLRCERLAQAFGDRLYV 175 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH +R E+ ++ +AY LPLVATN F + +D+EAHD L+ +A ++++ Sbjct: 176 ELQRHNTDVERRAEAGLIDIAYDMGLPLVATNEPHFATADDFEAHDALLCIASGKLIAET 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299 DR ++TPDH K R+EM +F+DLPEAL +TVEIA+RC++ P + Sbjct: 236 DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVND 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ E ELR +A GL R+ +++G +DY++RL FEL+VI RMK++GYFLI Sbjct: 296 AEEAAAAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYAGYFLI 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD Sbjct: 356 VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+ LRDVGR LQMPY QVD+L KL+ Sbjct: 416 IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P +PA PVS QAI + + + R DP V R +I+QKLEGL RHASTHAAGIVIGDRP Sbjct: 476 PQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 LS LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L ++ L QR + +DL Sbjct: 536 LSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDL 595 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + + +D +Y +L +G+FQ+ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Sbjct: 596 ATLGIEDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANI 655 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y RK+G E+ +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMG Sbjct: 656 PTYCARKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMG 715 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KKI+ EM+KQ+ F+ GA+KNG+ K A IF+LLAKFADYGFNKSHAAAYA++SY TA+ Sbjct: 716 KKIRAEMEKQRAIFVEGATKNGVPKDSADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 MK HYPVEF+AASMTL+++N +K+ +F +A++ I++ PSVN F+VG N IYY+ Sbjct: 776 MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYA 835 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 LA +KGVG + I+EA DKPF SL DF +RV+ + +N+RV+ESL AGA DC +R Sbjct: 836 LAGLKGVGLQAVQMIVEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNR 895 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 ++ D I Q + T+ ++F + ++ L + + R E Sbjct: 896 ARVFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APQVVLPQIEPWLPAERLRREYDA 953 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016 +GF+ SGHPLD Y L+++ ++ + E A G ++AA VVS+ +++T+ G+++G Sbjct: 954 IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013 Query: 1017 WVTFSEPAKEYEANFF 1032 + S+P +EA F Sbjct: 1014 IMGLSDPTGHFEAVLF 1029 >gi|187776689|ref|ZP_02993162.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579] gi|187775348|gb|EDU39150.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579] Length = 1185 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 373/1071 (34%), Positives = 593/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVAAKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L+E +EGLI L+ G + + + ++K L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKE-HSEGLIALSACLGGEVQSNILKGNLEKSKKAALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +VQ++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVQMSKELDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ +C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEQCNFDYNFHESKLPKFPLEEGIDP 302 Query: 304 QKEEENELRNKAVAG------------LEVRLAQGAIAKGYHAQDY---RQRLDFELNVI 348 LR G + +A G ++ +RL++EL++I Sbjct: 303 Y----EYLREICFKGLFSRYEILKDFMNKPFSMDEILAYGAENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +EA + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEAYDNEERVKELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYATEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M+ +++ FI G NGI + +A N+F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMELERKNFIYGNKEEGVKGCINNGIDEKVANNLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDSDKVSFYVNFAETLGIEIVAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKGKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 896 KRLVESLIKAGAFDCLNVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------- 989 I + + E+ + G YFSGHPL+ Y+ L+ + ++ Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKVQISHHISDIISKESLEGNM 1015 Query: 990 -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDAINSIKDGDKVIVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|220918685|ref|YP_002493989.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956539|gb|ACL66923.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1210 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 398/1083 (36%), Positives = 608/1083 (56%), Gaps = 70/1083 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 RI L++ ++GL+ LT +G + R A + ++ +F ++ +Q Sbjct: 116 PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + R Sbjct: 175 SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 235 RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E++ + A GL+ R + + YRQRL+ EL VI +M F GYFLIV DFI Sbjct: 291 SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+ Sbjct: 351 WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+ Sbjct: 411 RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470 Query: 486 PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522 + + R +E + + ++ + LEGL Sbjct: 471 KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKTLT++ Sbjct: 531 RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590 Query: 583 QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + + ++ IP DD Y L++ T G+FQ+ESSG + + M+P Sbjct: 591 DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650 Query: 640 IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ED+IA +LYRPGP+D + VY +RK+G+EK+ HP ++ +L+ T GVI+Y Sbjct: 651 FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ + +A IF+ Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ +AR Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 812 FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 ++++PP VN F RI + L A++GVG + + I+EA A P Sbjct: 831 SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F SL D RVDSKK+N++VLE+LV +GALD G R QL +D + +R + Sbjct: 891 FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950 Query: 922 KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 ++F D + VR E+ LGFY +GHPL Sbjct: 951 GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029 Y+ +R+ G+ + + +V S +++ + KG+R G++T + E Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070 Query: 1030 NFF 1032 + Sbjct: 1071 ICW 1073 >gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp] gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp] Length = 1176 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 424/1068 (39%), Positives = 617/1068 (57%), Gaps = 60/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FVHL++H+ YSL++G + + ++ +A PA+A+TD +N+ S ++F + A Sbjct: 1 MTQ--AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI G + + + + + LL +GY+ L EL+SR + Q Sbjct: 59 AGVKPICGADIWMASAEE----------DGPLTRLTLLAMNPKGYRNLTELISRGWAEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I W+++ EGLI L+G G + A +AE RL + +F DR Y+ Sbjct: 109 SNDLVIIQRDWVKD-AAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYL 167 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR R D V LA E PLVATN+ F+ ++D+EAH+ + + + Sbjct: 168 EVQRTSRVGDEEYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDP 227 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + YLK +EM +FSDLPEALENTVEIA+RC+ +Q+ LP F Sbjct: 228 RRPRHYSDQQYLKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMG 287 Query: 303 IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I ++ LR+ + GLE RL + Q Y RL+FEL++I +M F GYFL Sbjct: 288 I----DDYLRHASFEGLEERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF Sbjct: 344 IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV RA Y DRL K+ Sbjct: 404 DVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKM 463 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + ++ RE D + ++S KLEG+ R HA G+VI Sbjct: 464 IPFEVGMTLEKAYEMEEP-LREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTK 522 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 L+ P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ +++ + + + Sbjct: 523 LTDFSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGA 582 Query: 597 ------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++ IP DD +TY +L T +FQLES GM++ ++ ++PDC+ED+IALV+L+ Sbjct: 583 ADEDLVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALF 642 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGP+ + + + NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+++ Sbjct: 643 RPGPLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMA 702 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L+ KFA YGFNK Sbjct: 703 GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNK 762 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R ++I PP VN Sbjct: 763 SHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNV 822 Query: 824 PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F V D RI Y L A+KGVG I+E A+ PF L DFC+RVD K++N+R Sbjct: 823 SEFKFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRT 882 Query: 882 LESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 LE+L+ +GALD G +R LL S++ + A+ ++ + H ++ Sbjct: 883 LEALIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDL 942 Query: 927 FAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F + K R + E+ LG Y SGHP+D Y+ +R+ + Sbjct: 943 FGGLFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIV 1002 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E +A M+V+ + K +KG ++G++T + + EA+ F Sbjct: 1003 ELKPARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048 >gi|312149376|gb|ADQ29447.1| DNA polymerase III subunit alpha [Borrelia burgdorferi N40] Length = 1161 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|226321045|ref|ZP_03796588.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805] gi|226233569|gb|EEH32307.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805] Length = 1161 Score = 777 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|288574785|ref|ZP_06393142.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570526|gb|EFC92083.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1145 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 378/1040 (36%), Positives = 598/1040 (57%), Gaps = 33/1040 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K +FVHL VH+ YSLL+GA+ + + PA+AI+D ++ +EF Q Sbjct: 1 MTKEKNFVHLHVHTEYSLLDGAIRCKELARRAKEWGMPAVAISDHGVMYGVIEFYQACKD 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + + + ++LL GY L++LVS D Sbjct: 61 EGIKPIIGCEIYVAPEGIEEKRKENPIN-----HLLLLAENDVGYHNLVKLVSIANT-DG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L +EG+I + +G I + + A R ++ +FG D + Sbjct: 115 FYYKPRVDHDLLSRY-SEGIIACSACLAGEIPQLLIAGEDEKALDRANLYRDIFGEDNFF 173 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H + +++++ H PLVAT +S ++++EDY+ H++L+ V ++ + Sbjct: 174 LEIQYNHIPHQAVVNKGLIEMSRKHGFPLVATTDSHYMNKEDYDWHEILLCVGTNSTLDD 233 Query: 243 KDRPRVTPDHYLKN--RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R + + D+PEALENT++IA RC + Sbjct: 234 PKRMSFETNDFYLRSAEEMWQIFGDDVPEALENTLKIAERCDVSFDLGTREYKLPQFDIP 293 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + E+ L A GL+ R + +YR+RL++EL+VI +M F GYFLI+ Sbjct: 294 EG--ETLESFLEKSAFDGLKER-----LKGAPLTDEYRRRLEYELSVINQMGFPGYFLII 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 AD IQ K+ IP+GPGRGS AGS+ AYA+ IT++DP+++ L+FERFLNP+R++MPD D Sbjct: 347 ADVIQACKERGIPIGPGRGSAAGSLVAYAMKITELDPIKYGLIFERFLNPERVTMPDIDT 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D R+++++YV KYG E V+QIITFG ++ KAA++DVGRA+ +PY++VDR+ KL+P Sbjct: 407 DVSDKGREDLLKYVVEKYGVENVSQIITFGRMKTKAAIKDVGRAMGIPYAEVDRVAKLVP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 AI+ +E R DP + LLE + K+EGL RH S HAAG+VI PL+ Sbjct: 467 --DGVKSIADAISLTPDLKEIRDKDPKMRTLLESAAKIEGLARHCSQHAAGVVITPMPLT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 LVP+ + + VTQF+M+ +E+ GL+K DFLGL+TL++L+++L+ + +L+ Sbjct: 525 DLVPVRKIG-ENQVVTQFSMEPVERLGLVKMDFLGLQTLSILEEALENIKTNGKEPPNLN 583 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD T+ +L TLG+FQLES+GMR+ L+ M PD ED+IA+++LYRPGP+++ + Sbjct: 584 ELPMDDQSTFKMLQAGDTLGVFQLESAGMRRLLKKMLPDSFEDVIAVLALYRPGPLESGM 643 Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 Y K+G+ K +HP+++ +LKET GVI+YQEQVM+ A L+GY+L AD+LRRAM Sbjct: 644 LDQYVECKHGRAKAHYLHPMLEDVLKETHGVILYQEQVMKCASTLAGYTLGGADLLRRAM 703 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E M++Q+ F+SGA K G+ K A IF+++ KFA YGFNKSH+AAYA+ISYQTA Sbjct: 704 GKKKVEVMNEQRAIFLSGAEKQGVDKAKADEIFDIIQKFAGYGFNKSHSAAYALISYQTA 763 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 ++K HY EF+AA +T ++ + + + + ++ R+ I ++PP VN F +N I Sbjct: 764 YLKAHYDREFMAAYLTSQIGSKKDVMAAYVREVRKSGIPVLPPDVNQSRSAFTAAENVIR 823 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+ VG+ I++A + PF L DF RVD + LN+ V+E+L+ AGA D Sbjct: 824 FGLEAVGKVGSGAVEAIIKAREEGGPFKDLWDFLDRVDVRCLNKGVMENLIKAGAFDSIS 883 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R QL++S + YA +++ ++F ++ + + + + E E Sbjct: 884 PNRRQLMESFPAMMDYA--LKRGCDGDQCSLFGEQEAAV--HPDMVEVEDYDIQEKLEME 939 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKGS 1013 + +G Y SGHP + Y+ + + R + A M+V +K T++G Sbjct: 940 KSAIGMYISGHPFERYEEKASRYVNCTISDL-ELWRSEKVSPCFAGMLVESVEKYTKRGE 998 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 +G + F + + E EA FP Sbjct: 999 PMGILRFEDCSGEIEAVCFP 1018 >gi|218135117|ref|ZP_03463921.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC 43243] gi|217990502|gb|EEC56513.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC 43243] Length = 1200 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 369/1004 (36%), Positives = 559/1004 (55%), Gaps = 31/1004 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E +F HL VH+ YSLL+G +N I+ + ++AITD ++ ++F + A Sbjct: 1 MEIRMAFTHLHVHTEYSLLDGLSKINEIVSQAKKLGMDSLAITDHGVMYGVIDFYRAALK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + +VLL GY L+++VS+ + ++ Sbjct: 61 EGIKPIIGCEVYVAPGSRFDK--EAGAGDDRYYHLVLLAENDTGYHNLMKIVSKGF-VEG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L E EG+I L+ +G + R N + K L ++++FG + Sbjct: 118 FYYKPRVDYEVLSEYH-EGVIALSACLAGEVQRYLARNMYEEGVKAALRYQEIFGKGNYF 176 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ Q+++++ + LVATN+ + +D AHD+L+ + S ++ Sbjct: 177 LELQDHGIPEQRFVNQQLMRMSRELGIDLVATNDVHYTFADDASAHDILLCIQTSKKITD 236 Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR + +YLK+ EM +F+ P+AL+NT +IA RC+ ++ LP++ Sbjct: 237 TDRMKYEGGQYYLKSEQEMRELFAYAPQALDNTAKIAARCNVEIEFGVQKLPKYDTPA-- 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + LR G R +D R+RLD+EL+VI M + YFLIV Sbjct: 295 -VYASSSEYLRWLCNRGFGKRYPD-------APEDVRKRLDYELSVINEMGYVDYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI +AK N+I VGPGRGS AGSV AY L ITDIDP+++SL+FERFLNP+R+SMPD D+D Sbjct: 347 DFINYAKSNDISVGPGRGSAAGSVVAYCLEITDIDPIKYSLIFERFLNPERVSMPDIDVD 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG +RV QI+TFG++ A+A ++DVGR L +PY+ D + K+IP Sbjct: 407 FCFERRQEVIDYVVRKYGKDRVCQIVTFGTMAARAVIKDVGRVLDLPYALRDSVSKMIPR 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +AI + + +D +V L++ S++LEGL RHAS HAAG+VI + + + Sbjct: 467 ELGITID-KAIEMNPELKALYNSDETVHDLIDKSRRLEGLPRHASMHAAGVVISQKAVDE 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+ R V QF M +E+ GL+K DFLGL+TLT++Q + + + D+ I Sbjct: 526 YVPLSRGS-DGSIVAQFVMTTLEELGLLKMDFLGLRTLTVIQSAEHMVRKVVPDFDIDKI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 ++D + +L+T T G+FQLESSGM+ ++ ++P +EDIIA +SLYRPGP+D I Y Sbjct: 585 DYNDAAVFDMLSTGRTEGVFQLESSGMKSFMKELKPHSMEDIIAGISLYRPGPMDFIPQY 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KN + IV P ++P+L+ T G I+YQEQVMQI + L+GYS +D++RRAM KK Sbjct: 645 IKGKNDRSSIVYDCPQLEPILEPTYGCIVYQEQVMQIVRDLAGYSWGRSDLVRRAMSKKK 704 Query: 722 KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 M++++ FI G NGI + +A +I++ + FA Y FNKSHAA YAV++ Sbjct: 705 AYVMEQERRNFIYGNPEENVKGCVNNGIDEKVAGHIYDNMIDFAKYAFNKSHAACYAVVA 764 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++KTHYP +F+AA MT +DN K+ ++ RQ I I+PP VN F V N Sbjct: 765 YQTAFLKTHYPTQFMAALMTSVIDNSTKVAEYVMACRQMGIDILPPDVNEGEYGFSVSGN 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L+AIK +G ++ + F +L DF R+ K+ N+R +E+ + +GA D Sbjct: 825 AIRYGLSAIKSLGRPVIEALVNERSENGKFKNLRDFIERMG-KEANKRTIENFIKSGAFD 883 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSV 950 CF +R Q + I EKN ++F E+ +I + Sbjct: 884 CFEGNRRQQMLVYSQIVDDVARNEKNSLTGQMSLFDFVDEETKAEFEIKMPDVPEYGKKE 943 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 E+ VLG Y SGHPLD Y + K + Sbjct: 944 LLAFEKEVLGIYVSGHPLDEYIDMWNKYTTARTSDFEPEDEDAQ 987 Score = 70.6 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + A G+ + + ++ K K T+ + +VT + E FP Sbjct: 1032 RDEGALRDGDEVTIGGIITDKTVKSTKTNQLMAFVTVEDMYGTVEVIVFP 1081 >gi|148381315|ref|YP_001255856.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153930894|ref|YP_001385691.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 19397] gi|153935249|ref|YP_001389097.1| DNA polymerase III DnaE [Clostridium botulinum A str. Hall] gi|148290799|emb|CAL84933.1| DNA polymerase III alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|152926938|gb|ABS32438.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 19397] gi|152931163|gb|ABS36662.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. Hall] Length = 1185 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 375/1071 (35%), Positives = 599/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLEKAEEVALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 QQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +E + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ R+ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQRN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A ++F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F + S Sbjct: 896 KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131] gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131] Length = 1163 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 508/1058 (48%), Positives = 668/1058 (63%), Gaps = 48/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TVALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ LS L E EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 115 EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+EN+VEIARRC+F Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENSVEIARRCAFKAAKR-------- 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +E ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 286 PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q +AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + + IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994 + L R E + +GFY SGHPLD Y L++ + + Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029] gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC 17029] Length = 1163 Score = 776 bits (2003), Expect = 0.0, Method: Composition-based stats. Identities = 509/1058 (48%), Positives = 668/1058 (63%), Gaps = 48/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTEAGYGNLMKLSSCLYL-GK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ LS L E EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 115 EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +E ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 286 PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q +AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + + IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994 + L R E + +GFY SGHPLD Y L++ + + Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|170756612|ref|YP_001783011.1| DNA polymerase III DnaE [Clostridium botulinum B1 str. Okra] gi|169121824|gb|ACA45660.1| DNA polymerase III, alpha subunit [Clostridium botulinum B1 str. Okra] Length = 1185 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 375/1071 (35%), Positives = 599/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F +R Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKERFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ +PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLYIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +E + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A ++F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F + S Sbjct: 896 KRLVESLIKAGAFDCLKIYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|223888850|ref|ZP_03623441.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b] gi|223885666|gb|EEF56765.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b] Length = 1161 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|15594924|ref|NP_212713.1| DNA polymerase III subunit alpha [Borrelia burgdorferi B31] gi|2688500|gb|AAC66944.1| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31] Length = 1161 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD++ + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|254430744|ref|ZP_05044447.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp. PCC 7001] gi|197625197|gb|EDY37756.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp. PCC 7001] Length = 1180 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 390/1056 (36%), Positives = 590/1056 (55%), Gaps = 39/1056 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERAVELGMPALALTDHGVMYGAIELLKLCSKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVING---ALDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I +A VA + ++++FGD Y+ Sbjct: 119 FARACIDKQLLRQ-HSEGLIVATACLGGEIPQAILRGRPDVARQVAAWYQEVFGDDFYLE 177 Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H G DR +++ ++ + L+ATN++ +LS D EAHD L+ V ++S + Sbjct: 178 IQDHGGLEDRIVNTEIARIGQELGIELIATNDAHYLSVGDVEAHDALLCVLTGKLISDEK 237 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ +EM+++F+D P+ + V + + ++ + + + + Sbjct: 238 RLRYTGTEYIKSEAEMLALFADHLEPDVIRRAVANTAQVAEKVEDYDILGRYQMPRFPIP 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L A GL RL A+ Y +RL FEL V+ +M F YFL+V D Sbjct: 298 EGHTAVSYLSAVAEQGLRDRLE--LAAEAPFEPAYGERLRFELEVMEQMGFPTYFLVVWD 355 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 356 YIRFARENRIPVGPGRGSAAGSLVAYALGITNIDPVVHGLLFERFLNPERKSMPDIDTDF 415 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 416 CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + + + FRE DP V R ++++ ++EG + HAAG+VI P Sbjct: 476 RGKPAKLKEMIGPESPAAEFREKYEKDPDVRRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+LD + Q G VD Sbjct: 536 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLDLVQQSTGETVD 594 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD TY LL GIFQLESSGMRQ + ++P C+EDI ++++LYRPGP+D Sbjct: 595 PDKLPLDDAATYGLLARGDLEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGPLDA 654 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H + P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 655 GLIPKFINRKHGREAIDFAHDKLQPILNETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 714 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK K EM+K + F+ GA++ G+ +A +FE + FA+Y FNKSH+ AY +++Q Sbjct: 715 AMGKKKKSEMEKHQTIFVEGATRRGVDTKVAEALFEQMVLFAEYCFNKSHSTAYGAVTFQ 774 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN +DF +RI Sbjct: 775 TAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGIDFTPVGDRI 834 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++E D PF SL D C R+ ++LNRR LE+L+ +GALD Sbjct: 835 LFGLSAVRNLGDGAIRQLIEVRQEDGPFRSLADLCDRIPGQQLNRRALEALIHSGALDAL 894 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---------------KGTFSDK 937 +R QL+ LD I +A ++R + N+F G S Sbjct: 895 EPSGNRAQLMADLDLILDWASSRARDRASGQGNLFDLMASSSAAEPASAGGAGGGDLSTA 954 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + + + E+ ++GFY S HPL +R + + Sbjct: 955 PKAAPVNDYPPTEKLRLEKELVGFYLSDHPLKQLGRPVRLLSPVALATLEEQPDKAKVSA 1014 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 AMV +Q TRKG R+ + + EA FP Sbjct: 1015 VAMVPELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1050 >gi|14195653|sp|O51526|DPO3A_BORBU RecName: Full=DNA polymerase III subunit alpha Length = 1147 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 391/1035 (37%), Positives = 605/1035 (58%), Gaps = 23/1035 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 1 MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 61 AGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ Sbjct: 118 FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S + Sbjct: 177 ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301 +R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 237 NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 297 N---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 407 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 467 GP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + I Sbjct: 525 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 585 PDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 645 IAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 765 NYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNG 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 825 IKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRV 958 L ++LD++ + + N+ ++F + + F + S E+ + Sbjct: 885 LFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKEL 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017 LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ + Sbjct: 945 LGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1004 Query: 1018 VTFSEPAKEYEANFF 1032 + + F Sbjct: 1005 GVIEDFKGAIDIVVF 1019 >gi|268679272|ref|YP_003303703.1| DNA polymerase III subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268617303|gb|ACZ11668.1| DNA polymerase III, alpha subunit [Sulfurospirillum deleyianum DSM 6946] Length = 1182 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 386/1062 (36%), Positives = 608/1062 (57%), Gaps = 50/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL +H+ YSLL+GA + + K+ A ++AITD N+F AL+F + GI+PI Sbjct: 6 YTHLHLHTEYSLLDGANKIGKLAKKLKAQGVGSVAITDHGNMFGALDFYKTMRKEGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QD++ G + L GY+ L+ L S Y+ R Sbjct: 66 IGIEAYIHNQDDI-----GDKTTKQRFHLCLFAKNEIGYKNLMYLSSMSYIKG-FYYYPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFGD 180 I L+E +EGLI + G ++ N+ + A++ L +K +FGD Sbjct: 120 INKQLLKE-HSEGLICSSACLQGEVNWHLNLNNKRNVQFGAKGYERAKEVALEYKAIFGD 178 Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH D+ + + ++++A + ++ATN++ +L +D EAH+ M +A + Sbjct: 179 DFYLEIMRHGINDQMFIDDNILRIAKETGIKVIATNDTHYLEPDDAEAHEAFMCIAMNKE 238 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 +R R + + ++K+ ++ +F D+PE LENT EI +C+ +++ Sbjct: 239 FDDPNRLRHSVHEFFVKSPEQIADLFVDIPEVLENTQEIVDKCNLEIKLGDPTPPKFKFT 298 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + +++ +K GL+ RL ++Y+ RL+ E++VI MKF Sbjct: 299 KEYAAREGLSFESDDDFFAHKCREGLKERLKY---VDASKHEEYKARLEREISVICTMKF 355 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GY LIV DFI+ AK +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFERFLNP+R+ Sbjct: 356 PGYMLIVWDFIREAKSRGVPVGPGRGSAAGSLVAYSLFITDLDPMPYNLLFERFLNPERI 415 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DFCQ RR E+I YV KYG VAQ+ITFG L AK +RDV R L +PY++ D Sbjct: 416 SMPDIDVDFCQSRRGEIIDYVVEKYGRYNVAQVITFGKLLAKGVIRDVARVLAIPYAEAD 475 Query: 474 RLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 + KLIP++ + A + + RE DP + R+ + + LEGL Sbjct: 476 AMAKLIPDELGITLNGIGVEGEEGFKAGAYQKEPKLRELIERDPRMQRVWKFALALEGLN 535 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R++ HAAG+VI D L P+Y+ D VTQ+++ ++E LIKFDFLGLKTLT++ Sbjct: 536 RNSGMHAAGVVISDEELWHKTPLYQPSGEDHLVTQYSLNFLEDVDLIKFDFLGLKTLTVI 595 Query: 583 QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L + R K +D + + +D + Y L+ + T+G+FQ+ESSGM+ E ++P+ E Sbjct: 596 DNALKLIKARYNKTIDFNALDLNDPKVYELIQSGDTIGLFQIESSGMQSLNERLKPNTFE 655 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695 D+IA+++LYRPGP+++ + + +RK+G++++ + P+L+ T GVI+YQEQV Sbjct: 656 DLIAVLALYRPGPMESGMLDDFIDRKHGRKEVTYFFDEFTKPLQPILEPTYGVIVYQEQV 715 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQI Q + G+SL E+D++RRAMGKK + M ++ E F GA K G+ + A+ +F L+ K Sbjct: 716 MQIVQSIGGFSLGESDLIRRAMGKKKIDYMKQKAEEFADGAVKQGLDRAHAIELFGLIEK 775 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+ + ++ I+ Sbjct: 776 FAGYGFNKSHSAAYALITFQTAYLKCYYPQEFMAALLTSEQDNTDKIVKYIDEVKRLGIK 835 Query: 816 IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 ++PPS+ ++F G I + + AIKGVG I+EA AD PF + DF S Sbjct: 836 LLPPSIQHSLIEFSAITDSDGCEAILFGMGAIKGVGNAAISKILEARADAPFSDMSDFIS 895 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 R+D K+N++VLESL+ +G+ D FGYSR LL+S+D I + + + + ++F Sbjct: 896 RIDGSKVNKKVLESLIKSGSFDGFGYSRRALLESIDTIIEASGECSRAKKMAEYSLFGDS 955 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + S + +E S +S E E+ +GFY SGHPLD ++ + +M E Sbjct: 956 EEMTSVAVKIEPISEFDSKRMLELEKETIGFYISGHPLDAFRAQIDEMNYMLSSEKDQIE 1015 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ V S +K ++KG++ G V+ + E F Sbjct: 1016 DGSKALFIGKVESITEKMSKKGNKFGVVSLMDFHGSMELTVF 1057 >gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1160 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 425/1049 (40%), Positives = 617/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K A+ PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G + Q + + I +L GYQ L L+S+ Y Sbjct: 60 AGMKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGL++++GG G + + +S + ++ + +++ F DR Y+ Sbjct: 110 GALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMTTEDFLVMKSKEGLEERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K Sbjct: 523 TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCL 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B] gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 1157 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 425/1045 (40%), Positives = 617/1045 (59%), Gaps = 36/1045 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS +S+ +G + IL K A+ AIA+TD NNL ++F G Sbjct: 2 SQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIG + + ++ +L EGYQ L +L+S+ YL Q + Sbjct: 62 IKPIIGADFWMLVPG----------FEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQ 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 V I WL + G+++L+G G + +A ++ A ++K F DR ++ L Sbjct: 112 GRVAIDQEWLLTYNS-GILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+ A LP+VATN +FLS ED+EAH++ +A+ ++ R Sbjct: 171 IRTGRADEETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + YL++ EM +FSD+PEA+ENTVEIA+RC+ +++ + Sbjct: 231 PKKYSEQQYLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPNFPTGE 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L ++ GLE RL + ++Y +RLD EL VI +M F GYFLIV Sbjct: 286 LSTADFLVERSKEGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L Y VDR+ K+IP Sbjct: 406 FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 +P + +A + +EA AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 EPGMTL-AKAFEVEPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R V Sbjct: 525 FSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPV 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDSKSFSVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G E+I H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 645 SGMVDNFIDRKHGHEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F +G+ KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTH+P EF+AA M+ +MDN +KI + + ++I+PP VN F Sbjct: 765 ALVSYQTLWLKTHFPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFT 824 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V ++ I Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+++ Sbjct: 825 VDEDLNIVYGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVEN 947 GALD G R ++ +L + A K + ++F D+ + + Sbjct: 885 GALDSLGPHRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWP 944 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 945 DKIWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVM 1004 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|224532747|ref|ZP_03673364.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23] gi|224512365|gb|EEF82749.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23] Length = 1161 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 390/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 +GI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KSGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNFLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + F + S E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200] Length = 1157 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 419/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G I +A ++ E ++ F +R ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RLA A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K + ++F D K + + Sbjct: 883 CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4] gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4] Length = 1157 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 426/1047 (40%), Positives = 606/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S+ +G + IL K + DQ A+A+TD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+GC + + S+ +L EGY+ L L+S YL Sbjct: 60 AGIKPIVGCDFFMLVPG----------FEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K I +WL+ +EGLI+L+G G + +A + + + ++ F DR Y+ Sbjct: 110 VKDRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V+LA +LP+VATN +F+ E +EAH++ +A++ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y + + EM +F D+PEAL+N+VEIA+RC+ +++ Sbjct: 229 RRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + A+ +Y +RLD EL VI M F GYFLI Sbjct: 284 GDLSIEDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IP+GPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 404 VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + EA AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L Q Sbjct: 523 TDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + I DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFR 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ I Y + AIKGVG I++A D PF L DFC+RVD KKLNRRV+E L+ Sbjct: 823 FTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + Sbjct: 883 CAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 V E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|302380218|ref|ZP_07268690.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3] gi|302312001|gb|EFK94010.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3] Length = 1161 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 369/1050 (35%), Positives = 585/1050 (55%), Gaps = 44/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ + AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ + K +VLL +GY L+++VS Y ++ Sbjct: 64 IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQQGYSNLMKIVSLGY-VEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + ++A ++ LV TN+ ++ +EDY+ H++L+ + + + ++ Sbjct: 178 SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L++ +M +F D PEA+ENT +IA C+ L+ LP F E Sbjct: 238 IPGEFFLRSEEQMKDLFKDYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DFI++A Sbjct: 294 SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN + Sbjct: 409 EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + VP+ Sbjct: 469 D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + +D Sbjct: 526 AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y + K+ Sbjct: 586 KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK + M+ Sbjct: 646 NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705 Query: 727 K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 I GA + G+ + +A I++L+ FA Y FNKSH+AAY++++ Sbjct: 706 DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TAW+K +YPVEFLAA ++ M N +I + ++AR+ +I+I PP +N F V DN Sbjct: 766 RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIEISPPDINYSLDKFDVKDNS 825 Query: 835 IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I Y L AIK VGT I+ + + F S DF R+ D +N+R +ESL+ AGA Sbjct: 826 IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 G +R L+ +I Q KN N+F E +D+ + + S Sbjct: 886 FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003 E+ VLG Y S HPL Y I+ + + G +++ ++ S Sbjct: 946 ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+ + +V F + E FP Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC 35316] gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 1160 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 425/1049 (40%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G + Q + + I +L GYQ L L+S+ Y Sbjct: 60 VGMKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q I WL E+ EGL++++GG G + + +S + ++ + +++ F DR Y+ Sbjct: 110 GAQGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL D++AH++ +A+ + Sbjct: 169 ELIRTGRADEENYLHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSSQQYMRTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + + Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R K L Sbjct: 523 TDFAPLYCDEAGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNEHGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQ 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP++ Y + + G ++ T RG A +V++ Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGLVIA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|269926189|ref|YP_003322812.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789849|gb|ACZ41990.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC BAA-798] Length = 1180 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 368/1044 (35%), Positives = 584/1044 (55%), Gaps = 39/1044 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL +HS YSLL+G + + + A AIA+TD ++ A+E +A AGI Sbjct: 2 SSDFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC+L + + + + + +++L EGYQ LI+LVS +L + Sbjct: 62 KPIIGCELYVAPRSRHDREKRLDSDYA---HLLVLAKDYEGYQNLIKLVSYAFL-EGYYY 117 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L + ++GLI+ + G + + + A + ++ + G + ++ L Sbjct: 118 KPRIDHELLAKY-SKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL 176 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ +++++LA E+PLVAT + + +ED D+L+ V V+ K+R Sbjct: 177 QDHPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNR 236 Query: 246 PRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R++ D EM F D PEA++NT IA C+ + + ILP F E D+Q Sbjct: 237 MRMSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQ 296 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR GL Q+ R RL++EL+VI ++ Y LIV DF+ Sbjct: 297 ----SYLRYLCEEGLRQ-------KYSEVTQEIRDRLEYELDVINTKGYTAYMLIVQDFV 345 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WA+ I RGS AGS+ +Y L IT DP+ + L FERFL R S PD D+DF Sbjct: 346 NWARSRGI-AVTSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFED 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI YV +KYG E VAQIITFG+++A+AA+RDVGRAL + YS D + K+I + Sbjct: 405 KRREEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMIQPGWS 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +A+ + R+ D + +L++++ KLEG+ RHASTHAAG++I P+ P Sbjct: 465 IK---EALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + +D P+ QF+M+ EK GL+K DFLGL L++L +++ + Q RG+ ++L +P Sbjct: 522 LQKDKNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGIDIELDKLPL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD +TY LL++ T G+FQLES+GMR+ ++ ++P I D+ A+++LYRPGP+D I Y Sbjct: 582 DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMDMIPTYIA 641 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+E + + P ++P+LK++ GV++YQ+ ++ IA ++GY+ EAD LR+A+GKKI+E Sbjct: 642 RKHGREPVEYLVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVGKKIRE 701 Query: 724 EMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E++ Q+++FI G ++G S A +++ + FA YGFNK+HAAAY++++YQTA++K + Sbjct: 702 ELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTAYLKAN 761 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834 YP E++++ +T+ MDN EK+ + + I+++PPSVN +F + Sbjct: 762 YPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRPGEPIP 821 Query: 835 IYYSLAAIKGVGTTTARHIMEASA---DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L A+K VG+ I+ A DK F S E FC+ VD K++N+R LESL+ AGA Sbjct: 822 IRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLIKAGAF 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSS 949 D FG R QLL ++D Q +++ ++F +TL + Sbjct: 882 DEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPEVDEAPKE 940 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 E+ +LG Y S HPL+ R E + G +R+AAM+V+ Q + T Sbjct: 941 QLLAWEKEMLGLYLSEHPLNAVLGKRRLDSTSLISEISEEMVGQTVRVAAMLVNPQIRTT 1000 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 ++ + + + FP Sbjct: 1001 KRQQEMLIGKLEDQTSSIDFVVFP 1024 >gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1] gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1] Length = 1163 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 507/1058 (47%), Positives = 666/1058 (62%), Gaps = 48/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P P +VLL T GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ S L E EGLI LTGG GP+ R AE L ++ RLYV Sbjct: 115 EGALPQVTPSEL-ERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +E ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 286 PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLSFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q +AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + + IP +D TY L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ++ GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ K+ Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEALNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994 + L R E + +GFY SGHPLD Y L++ + + Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|258645443|ref|ZP_05732912.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470] gi|260402794|gb|EEW96341.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470] Length = 1145 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 367/1034 (35%), Positives = 567/1034 (54%), Gaps = 32/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGTCRIKELVSYVKELGQTAIAITDHGVMYGAVYLYKECLKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + K + ++LL GY+ +I++ S+ + + Sbjct: 63 IIGCEIYVTAGSRFIKDADKK---EKLAHLILLAENNTGYKNIIKICSKSWT-EGYYHKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R L + EG+I L+ G + +A + A K + + FG D ++ LQ Sbjct: 119 RADHDLLLKYH-EGVIALSACIGGELPQAVLKGDLEQARKIIRFYMDTFGKDNYFIELQN 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + +LA + L LVATN+ + ++D + ++ + ++ + R R Sbjct: 178 HGLPEEAAVRPALAELAKEYGLGLVATNDFHYTRKKDAGSQEIKLCISTGNTMDDPGRFR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ EM ++ + P A+ENT IA RC+ LP F E + Sbjct: 238 FANEEFYCKSGEEMKALLGNFPGAIENTARIAERCNVTFTFGKHKLPSFTVPEGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR L R + ++RLD+EL VI +M F+ YFLIV DFIQ+ Sbjct: 294 AATYLRRLCEEALPERYPNYGNKE-------KERLDYELGVINQMGFADYFLIVMDFIQY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK + IP+GPGRGS AGS+ +Y L IT++DPLRF LLFERFLNP+R+SMPD D D C Sbjct: 347 AKTHGIPIGPGRGSAAGSIVSYLLHITEVDPLRFHLLFERFLNPERISMPDIDTDLCYRG 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VI Y+ KYG + VAQIITFG+L A+A +RDVGR L MP +VDR+ K+IP+ P Sbjct: 407 RGQVIEYLAKKYGEDHVAQIITFGTLAARAVIRDVGRVLSMPLREVDRIAKMIPSGPGVT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + F E +D ++ RL++ LEGL R++ THAAG+VI P+ + VP+ Sbjct: 467 L-RTTLERSKEFAELYASDSNIHRLIDHCLDLEGLSRNSGTHAAGVVICSEPVEEYVPIQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + + TQ+ E+ GL+K D LGL+ LT++ +L+ + RG+ +D+ +P D Sbjct: 526 L-TQDNFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDALEMIKTNRGIALDIEALPHVD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 T +L + T+G+FQ ESSG L ++P+C ED+I +V+LYRPGP+ + + + N Sbjct: 585 ELTCKMLRSGDTVGVFQSESSGFTSLLMQLEPECFEDLIPMVALYRPGPLGSGMAEDFIN 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+GK + HP ++ +LKET G+I+YQEQVMQIA ++ G+SL +AD+LRRAMG K E Sbjct: 645 RKHGKTAVDYPHPSLETILKETYGIILYQEQVMQIASVMGGFSLGQADLLRRAMGHKEPE 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q++ F+ GA+ IS+ IA +F+L+ FA YGFNKSH+ Y I++QTA++K HY Sbjct: 705 ILQAQRKLFVKGAAVQKISEEIANRVFDLMVHFAGYGFNKSHSVCYGWIAWQTAYLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+AA MT + K+ ++ D R+ ++I P VN F V + I + LA ++ Sbjct: 765 RPEFMAAMMTCYNGDRNKVSRYISDTRRAGVKIAAPDVNRSEAGFSVNGDTILFGLAGVQ 824 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG I+ A D F S+ D R+DSK LN R ESL+ GA+D FGY+R QL+ Sbjct: 825 NVGEGIVNSIIGARKKDGAFKSISDLLERIDSKGLNSRACESLIRCGAMDSFGYNRRQLI 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + L A +R + ++F E + I +++ + ++E+++LGFY Sbjct: 885 EVLPQALNNASVTRSDRESGQLSLFGGE--IKAKTIVYPDLPDMSAAEKIDSERKLLGFY 942 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 SGHPLD YK ++ ++ G + + ++ + T+KG+ +G+V+ Sbjct: 943 VSGHPLDSYKQQMKY--CSPIYSLLSDGMKYDGKMVSVGGIITRVKSMTTKKGAPMGYVS 1000 Query: 1020 FSEPAKEYEANFFP 1033 + EA FP Sbjct: 1001 LEDYEGAMEAVIFP 1014 >gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 1162 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 424/1055 (40%), Positives = 623/1055 (59%), Gaps = 46/1055 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL +H+ +SL++G + + ++ + PA+A+TD NLF ++F + A Sbjct: 1 MTTS--FVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + +VLL +GY+ L L+SR Y Q Sbjct: 59 AGIKPIVGVDTWVS----------APQAGEAPSRLVLLAQDEDGYRNLTRLISRSYQEGQ 108 Query: 125 GKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + W + + GLI L+GG G I RA + AE+ ++ LF R Y Sbjct: 109 QSGDAPVLDRGWF-DGASRGLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFY 167 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + R + V LA + LP+VATN+ FL+ D++AH+ + + V+ Sbjct: 168 LEIGRTGREGEEDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RPR TP YL+ EM ++F+D+PEALEN+VEIARRC+ L + +LP + Sbjct: 228 PRRPRDYTPQQYLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAGM 287 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYF 357 ++ R + GL+ RLA +G + YR+RL+ EL+VI +M F GYF Sbjct: 288 ----TTDDYFRKASREGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDNAIPVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC ++RD VI YV +YG E+V+QIIT G++ AKA +RDVGR L PY VDR+ K Sbjct: 404 FDIDFCMEQRDRVIDYVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP + + + + R D V L+++++KLEG+ R+A HA G+VI Sbjct: 464 LIPFEIGMTLDKA-LEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594 L+ P+Y + VT F+ +E GL+KFDFLGL+TLT++ ++ + Q+ Sbjct: 523 ELTDFSPLYCEPGGQSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEG 582 Query: 595 --KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD ET+ LL + T +FQLES GM++ ++ +QPD EDI+ALV+LYRP Sbjct: 583 QAPLDVNRIPLDDPETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+ + + + NRK+G+ K+ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L A Sbjct: 643 GPLQSGMVDDFINRKHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGA 702 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+E F++GA+ G+ + A IF+L+ KFA YGFNKSH+AAYA Sbjct: 703 DMLRRAMGKKKPEEMAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYA 762 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F++A ++ +MD+ +K+ ++ R + ++PP +N F V Sbjct: 763 LLSYQTAWLKQHYPAAFMSAVLSADMDHTDKVVNLIEECRAMELHVVPPDINRSQHRFGV 822 Query: 831 GDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D R + Y L AIKGVG + + +++A A PF SL+D C R DS+K+NRR LE+L+ A Sbjct: 823 ADARTVIYGLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRA 882 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD G +R L+ +L A+ +N + E++F + + E+ + Sbjct: 883 GALDSIGPNRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASDVDDEQLPEWDE 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRL 997 +R E+ LG Y +GHP+D ++ L+ + K + VA + + Sbjct: 943 DLRLSAEKETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATV 1002 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V++ + K T+ G RIG+VT + + E F Sbjct: 1003 GGLVINIRTKPTQTG-RIGFVTLDDRSGRIEVGLF 1036 >gi|229829648|ref|ZP_04455717.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM 14600] gi|229791637|gb|EEP27751.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM 14600] Length = 1175 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 369/1048 (35%), Positives = 568/1048 (54%), Gaps = 40/1048 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ +SLL+G+ + + + ++ A AITD ++ +EF ++ A GI+P Sbjct: 2 SFVHLHSHTQFSLLDGSNKIRDYVSRVRELGMNAAAITDHGVMYGVIEFYKECHAQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + N G ++L+ GY LI++VS + +D Sbjct: 62 LIGCEVYVATGSRFDR-NSGSAGEDRYYHLILIAENNRGYANLIKIVSAGF-VDGYYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L+ EG+I + +G + + + A++ L + FG Y+ LQ Sbjct: 120 RVDREILERYH-EGIICTSACLAGQVQKYLQRGQYEAAKEAALWHENTFGHGNYYLELQD 178 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D ++++L+ +PLVATN+ + ED+EAHDVL+ + ++ DR R Sbjct: 179 HGQAVDGRVVQELIRLSGETGIPLVATNDCHYTMAEDWEAHDVLLCIQTGKKITDTDRMR 238 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM +F PEA+ENT +IA RC ++ +P + D Sbjct: 239 YEGGQYYVKSEEEMRKLFPFAPEAIENTQKIADRCQVTIEFGVTKMPHYAVPRGYD---- 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L GL+ R GA + +L +EL VI +M + YFLIV D+I + Sbjct: 295 AWTYLNKLCYEGLDRRYGDGA-------DALKPQLSYELGVIQKMGYVDYFLIVWDYINY 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ + VGPGRGS AGS+ AY ITDIDP+RF L+FERFLNP+R++MPD D+DF + Sbjct: 348 ARTHGCTVGPGRGSAAGSLVAYTTGITDIDPIRFQLIFERFLNPERVTMPDIDVDFDYEH 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VIRYV KYG + V QIITFG+L + A+RDVGR L +PY VD + K +P + Sbjct: 408 RGDVIRYVTEKYGEDAVTQIITFGTLAPRNAIRDVGRVLDLPYGLVDTVAKSVPQELKIT 467 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + +++ D V L+++++KLEGL R++STHAAG+VI + + + VP+ Sbjct: 468 ID-KALKANPELKKSYDEDEEVHNLIDMARKLEGLPRNSSTHAAGVVIAAKAMDEYVPLA 526 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPFD 604 R VTQFNM +E+ GL+K DFLGL+TL ++ ++ +D++ IP+D Sbjct: 527 RG-TDGNVVTQFNMIEVEELGLLKMDFLGLRTLNVIADAVRDARANHPGLDLDINRIPYD 585 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D E Y ++ G+FQLES+GM+ ++ ++P ++DIIA ++LYRPGP+D I Y Sbjct: 586 DPEVYAMIGRGQCEGVFQLESAGMKSFMKELKPANLDDIIAGIALYRPGPMDFIPRYIKG 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K + IV P + P+L+ T G I+YQEQVMQI Q L+GYSL AD++RRAM KK +E Sbjct: 646 KKNADAIVYDCPQLKPILESTYGCIVYQEQVMQIVQQLAGYSLGRADLVRRAMSKKHADE 705 Query: 725 MDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 M++++ FI +G NGIS+ +A I++ + FA+Y FNKSHAA YAVI+YQT Sbjct: 706 MERERHNFIFGNREEGVAGCLANGISEAVASKIYDEMMDFANYAFNKSHAACYAVITYQT 765 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YP EF+AA MT ++ +K+ ++ R+ I+++PP +N+ F D + Sbjct: 766 AYLKHYYPREFMAALMTTFINQSDKVSQYIAHCREIGIEVLPPDINSGDGRFVADDKGVR 825 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIK VG I+ A PF +LEDF +RV K +N+R +E+L+ AGA D Sbjct: 826 YGMYAIKSVGHPVIDAIVAERNARGPFKTLEDFLTRVSDKAVNKRSVENLIKAGACDSLD 885 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953 +R Q+ I +K+ ++F A E+G + + Sbjct: 886 GNRRQMTYIFPTIMDQVSSEKKHSMAGQMSLFDIAGEEGREDFAFKMPDVEEFDRQQLLA 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005 E+ VLG Y SGHPL+ ++RK E + LA M+ SK Sbjct: 946 FEKEVLGIYVSGHPLEDDLDLIRKNTSDNTLEFRLDQEKGQAPIQDKKQVVLAGMITSKN 1005 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + TR + + + E FP Sbjct: 1006 VRFTRNNQPMAILNLEDLYGTVELVVFP 1033 >gi|168178944|ref|ZP_02613608.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916] gi|226950824|ref|YP_002805915.1| DNA polymerase III DnaE [Clostridium botulinum A2 str. Kyoto] gi|182670052|gb|EDT82028.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916] gi|226842287|gb|ACO84953.1| DNA polymerase III, alpha subunit [Clostridium botulinum A2 str. Kyoto] Length = 1185 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 373/1071 (34%), Positives = 597/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGNENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +E + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A ++F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 896 KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|197123916|ref|YP_002135867.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K] gi|196173765|gb|ACG74738.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K] Length = 1210 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 397/1083 (36%), Positives = 607/1083 (56%), Gaps = 70/1083 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 RI L++ ++GL+ LT +G + R A + ++ +F ++ +Q Sbjct: 116 PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + R Sbjct: 175 SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 235 RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E++ + A GL+ R + + YRQRL+ EL VI +M F GYFLIV DFI Sbjct: 291 SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+ Sbjct: 351 WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+ Sbjct: 411 RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470 Query: 486 PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522 + + R +E + + ++ + LEGL Sbjct: 471 KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKTLT++ Sbjct: 531 RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590 Query: 583 QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + + ++ IP DD Y L++ T G+FQ+ESSG + + M+P Sbjct: 591 DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650 Query: 640 IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ED+IA +LYRPGP+D + VY +RK+G+EK+ H ++ +L+ T GVI+Y Sbjct: 651 FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHQSLEKVLEPTYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ + +A IF+ Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ +AR Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 812 FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 ++++PP VN F RI + L A++GVG + + I+EA A P Sbjct: 831 SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F SL D RVDSKK+N++VLE+LV +GALD G R QL +D + +R + Sbjct: 891 FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950 Query: 922 KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 ++F D + VR E+ LGFY +GHPL Sbjct: 951 GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029 Y+ +R+ G+ + + +V S +++ + KG+R G++T + E Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070 Query: 1030 NFF 1032 + Sbjct: 1071 ICW 1073 >gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1160 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 420/1049 (40%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL VHS YS+++G + ++ K AA PA+A+TD +N ++F A Sbjct: 1 MTD-PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + Q + LL EGY + L+S Y Sbjct: 60 VGIKPIIGADFYV----------QNPALENNFARLTLLARNQEGYHNITLLISAAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL + EGLI+L+G G + + + ++ L ++ F D Y+ Sbjct: 110 GSLGPVIDRHWLIK-HKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYI 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D + +A H +P+VATN+ F+ D++AH++ +A+ ++ Sbjct: 169 ELTRTGRADEESYLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P ++++ +M +FSD+PEAL N+VEIA+RC+ L++ + Sbjct: 229 KRPQNYSPQQFMRSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFF-----PKYPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L ++ GL RL + + Y QRL EL VI M F GYFLI Sbjct: 284 GKMSTEDFLIARSQEGLGKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQWAK N+IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+S+PDFD Sbjct: 344 VMEFIQWAKDNHIPVGPGRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PYS VDR+ KLI Sbjct: 404 VDFCMEKRDAVIEHVADMYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P D + +A + +A AD V LL++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDLGMTLEKAFVA-EPELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKM 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ IE GL+KFDFLGL+TLT++ K+++ + QR Sbjct: 523 TDFAPLYCDSQGQNPVTQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQ 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D+SLIP +D +++ +L T IFQLES GM+ ++ ++PDC EDIIALV+L+RPGP Sbjct: 583 PIDISLIPLNDPKSFEVLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N I HP + P+L+ T G+I+YQEQVMQIAQ+LSGYSL Sbjct: 643 LQSGMVDNFIDRKQGRETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD+LRRAMGKK EM KQ+ F +GA + GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GEADILRRAMGKKDPVEMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +KI + + + ++PP +N+ Sbjct: 763 AYALLSYQTLWLKTHYPAEFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V +I Y + AIKGVG I+EA F L DFC+R KKLNRR+LE L Sbjct: 823 FHVNAQGKIVYGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 +F+GALD G R L+ +L N K A+ K ++F + + + + Sbjct: 883 IFSGALDRLGPHRAALMHALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 + E+ LG Y +GHP+ Y +R G ++ T RG N+ +A VVS Sbjct: 943 PWQQQTVLDGERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVS 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG + + + F Sbjct: 1003 AKVMTTKRGARIGLCKLDDRSAHLDIMLF 1031 >gi|116070442|ref|ZP_01467711.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107] gi|116065847|gb|EAU71604.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107] Length = 1172 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 384/1053 (36%), Positives = 585/1053 (55%), Gaps = 41/1053 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L +++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + LQ +EGLI+ T G I +A +VA ++ +FGD Y+ Sbjct: 118 FSRACVDKDLLQRY-SEGLIIATACLGGEIPQAILRGRPEVARDVARWYQNVFGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR S++V++A + LVATN++ +L+++D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNSEIVKIAEELNIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298 R R T Y+K EM +F+D +A+ NT ++A + + +PRF Sbjct: 237 RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + LR + GL RL A A++Y R+ EL ++ +M F YFL Sbjct: 297 DG----HTAVTYLREVTLQGLRDRLE--LKADDPIAENYADRMSHELEIMEQMGFPTYFL 350 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D+I++A++ +IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD Sbjct: 351 VVWDYIRFAREQSIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KL Sbjct: 411 DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470 Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP P L+A+ + + FRE L DP+V ++++ ++EG + HAAG+VI Sbjct: 471 IPVVRGKPAKLKAMIGDESPNPEFREKYLGDPAVKHWVDMAMRIEGTNKTFGVHAAGVVI 530 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593 PL QLVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G Sbjct: 531 AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPG Sbjct: 590 TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649 Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D I + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD Sbjct: 650 PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM K + F+ GA + G+ ++ +F+ + FA+Y FNKSH+ AY Sbjct: 710 LLRRAMGKKKVSEMQKHRGIFVEGAKERGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP +N +DF Sbjct: 770 VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +RI + L+A++ +G R ++E+ + PF SL D C R+ S LNRR LESL+ GA Sbjct: 830 GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889 Query: 891 LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940 +D +R QL+ LD + +A K+R + N+F D Sbjct: 890 MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 S + E+ ++GFY S HPL P R + G + M Sbjct: 950 APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +Q TRKG R+ + + EA FP Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|169824700|ref|YP_001692311.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831505|dbj|BAG08421.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1161 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 368/1050 (35%), Positives = 583/1050 (55%), Gaps = 44/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK Q AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ + K +VLL +GY L+++VS Y ++ Sbjct: 64 IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQQGYSNLMKIVSLGY-VEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + ++A ++ LV TN+ ++ +EDY+ H++L+ + + + ++ Sbjct: 178 SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L++ +M +F + PEA+ENT +IA C+ L+ LP F + Sbjct: 238 IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGF----TN 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DFI++A Sbjct: 294 SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN + Sbjct: 409 EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + VP+ Sbjct: 469 D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + +D Sbjct: 526 AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y + K+ Sbjct: 586 KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK + M+ Sbjct: 646 NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705 Query: 727 K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 I GA + G+ + +A I++L+ FA Y FNKSH+AAY++++ Sbjct: 706 DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TAW+K +YPVEFLAA ++ M N +I + ++AR+ I+I PP +N F V DN Sbjct: 766 RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDVKDNS 825 Query: 835 IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I Y L AIK VGT I+ + + F S DF R+ D +N+R +ESL+ AGA Sbjct: 826 IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 G +R L+ +I Q KN N+F E +D+ + + S Sbjct: 886 FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003 E+ VLG Y S HPL Y I+ + + G +++ ++ S Sbjct: 946 ELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+ + +V F + E FP Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|322807697|emb|CBZ05272.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1185 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 373/1071 (34%), Positives = 597/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG E V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +E + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A ++F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 896 KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400] gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 1158 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 413/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS YS+ +G + I+ AIA+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ EGYQ L +L+S YL Sbjct: 60 AGIKPIIGADFWV----------QTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL + + GLI+++G G + +A + E + +++ F DR Y+ Sbjct: 110 VDNRVVIDQDWLVKYNS-GLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R ++ V+LA LP+VATN +FL ++D+EAH++ +A+ + Sbjct: 169 ELIRTGRAHEERYLHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL+ EM+++F+D+P A++N+VEIA+RC+ ++++ Sbjct: 229 RRPKTYSDQQYLRTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L N +V GLE RL A+ +Y +RL+ EL VI +M F GYFLI Sbjct: 284 GDLSIEDFLVNVSVKGLEERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY V+RL KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + EA D V L+++ ++LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVSIEAIPLADPACFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ I Y + AIKGVG I+EA + PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLNIVYGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + Sbjct: 883 LAGALDTLGPHRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQNFVHCTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L++ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G VT + + E F Sbjct: 1003 VMITKRGSKMGLVTLDDKSARLEVMLF 1029 >gi|109897589|ref|YP_660844.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c] gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c] Length = 1155 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 411/1039 (39%), Positives = 604/1039 (58%), Gaps = 33/1039 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS YS+L+G + ++ + + PA+A+TD N+ ++F ++A + GI+PI Sbjct: 6 FVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + Q V + LL + +GY+ + L+S+ YL + Sbjct: 66 IGTDFWV----------QSDALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL E +EG+I+L+GG G + + +AEK +++ F DR Y+ L R Sbjct: 116 IDQEWLVE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTG 174 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + + V+ A H+LP+VATN F+S +++EAH++ +A+ ++ RP+ Sbjct: 175 RLGEEDYIHRAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + Y++ EM +F+D+P+A+ENTVEIA+RC+ + + + + Sbjct: 235 SEQQYMRTSEEMCELFADIPQAIENTVEIAKRCNVSVLLGT-----YFLPDFPTGDMSIA 289 Query: 309 NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L + GLE RLA + +Y +RL EL VI +M F GYFLIV +FIQ Sbjct: 290 DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKIELVVINQMGFPGYFLIVMEFIQ 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D Sbjct: 350 WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP P Sbjct: 410 RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++ +A ++ R E D V L+++++ LEG+ R+A HA G+VI ++ P+ Sbjct: 470 TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D ++ +GV +D+ IP D Sbjct: 529 YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISAGKGVDIDILAIPMD 588 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---- 660 D +++ LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + +V Sbjct: 589 DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648 Query: 661 ---YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + H + +L+ T G+I+YQEQVMQIAQ +SGYSL AD+LRRAM Sbjct: 649 DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM KQ+E F +GA N I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT Sbjct: 709 GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836 W+KTHYP EF+AA M+ +MDN +KI + ++ I ++PP VN F V + RI Sbjct: 769 WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y + AIKGVG I+EA + + F L DFC++VD+K++N+RVLE LV+AGALD G Sbjct: 829 YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954 R ++ +L A K + ++F + K V + Sbjct: 889 PHRASIMATLPEAISAADQHAKAEAHGQSDMFGLLTTEPEQVEQAFAKVPHWAEKVWLDG 948 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y +GHP++ Y ++ + T + +V+ + ++G R Sbjct: 949 EKVTLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVGLVIGVRVMTNKRGRR 1008 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 G VT + + + FFP Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027 >gi|216264846|ref|ZP_03436838.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a] gi|215981319|gb|EEC22126.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a] Length = 1161 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 390/1035 (37%), Positives = 603/1035 (58%), Gaps = 23/1035 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 15 MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 75 SGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-EG 131 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ Sbjct: 132 FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH D+ ++V + +PL A N+S +++ ED A D+++ + S + Sbjct: 191 ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301 +R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 251 NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 311 N---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIVW 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+ Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L+ + LEG+ RHASTHAAGIVI PL+ Sbjct: 481 GP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + I Sbjct: 539 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 598 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D +T+++L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 599 PDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQF 658 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 659 IAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 718 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM++ K F+ GA + G K IA IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 719 EDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 778 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 779 NYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNG 838 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 839 IKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 898 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRV 958 L ++LD + + + N+ ++F + + F + S E+ + Sbjct: 899 LFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKEL 958 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017 LGFY SGHPLD YK + +A + + ++ + ++ S + +T++ + ++ + Sbjct: 959 LGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1018 Query: 1018 VTFSEPAKEYEANFF 1032 + + F Sbjct: 1019 GVIEDFKGAIDIVVF 1033 >gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea sp. MED297] gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297] Length = 1167 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 407/1052 (38%), Positives = 598/1052 (56%), Gaps = 45/1052 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++H+ YSL +G + + +++++ + + PA+A+TD +N F ++F AGI+P Sbjct: 3 SFVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G L I+ D+ + +L GY+ L EL+S + +Q Sbjct: 63 ILGADLYIENPDD----------DNAPFLMTVLAMNETGYRNLTELISDGFQKNQKHDRA 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL E EGLI+L+G G + A ++ AE + +K +FGDR Y+ LQR Sbjct: 113 ITRVEWLAEK-NEGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRT 171 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 D V L + +P+VATN+ +FL+ ED+EAH+ + + + RP R Sbjct: 172 GRDQDESLVQGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRR 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F D+P+ALEN+V IA+RCS +Q+ LP + E Sbjct: 232 YAEEQYLKSSDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEG----LTM 287 Query: 308 ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ R + GLE RLA Q Y RL FEL++I +M F GYFLIV DF Sbjct: 288 DDYFRQLSAEGLERRLAVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W K N +PVGPGRGSGAGS+ A+ L ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IRWGKNNGVPVGPGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R+ VI YV YG + V+QI+TFG++ AKA +RDV R P+ D+L KLIP DP Sbjct: 408 MEGRERVINYVAETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 ++ +A+ + + +E D + E++ KLEG+ R HA G+VI L+ Sbjct: 468 GMKLT-KALDEVAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFS 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598 P+ + VTQ++ +E AGL+KFDFLGL+TLT++ +L + R +D+ Sbjct: 527 PLLCEEDGTGLVTQYDKNDVEAAGLVKFDFLGLRTLTIIDWALKIINPRLEAQGKEPIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD ++ LL T +FQLES GM+ + +QPDC+ED+IALV+L+RPGP+ + Sbjct: 587 AHIPLDDAASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSG 646 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V N H ++P+L T G+I+YQEQVMQIAQ+L+GY+L AD Sbjct: 647 MVDNFINRKHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 MLRRAMGKKKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP F+AA+M+ E+ N EK+ F ++ RQ NI ++PP VN F V Sbjct: 767 VSYQTLWLKTHYPAAFMAATMSSELQNTEKVVIFVEECRQINIDVLPPDVNAGDYYFTVN 826 Query: 832 D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + ++I Y L AIKGVG I+ + PF L DFC R+D KK+N+R +E+L+ AG Sbjct: 827 EQDQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947 ALD G +R +L++ + K A+ N ++F + T Sbjct: 887 ALDSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDVYEPYAHVREST 946 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-------GYEESVATIRGNNIRLAAM 1000 +R E+ LG Y +GHP+D ++ +R++ EE RGN LA + Sbjct: 947 LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + ++T++G + VT + E F Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLF 1038 >gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107] gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107] Length = 1177 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 401/1063 (37%), Positives = 601/1063 (56%), Gaps = 54/1063 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FVHL++H+ +SL + + + ++ ++A PA AITD N + ++F + A Sbjct: 1 MP-AANFVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI G + + + LL +GY+ +IEL+SR + Q Sbjct: 60 TGIKPIAGSDFLMASHETDGKPTL----------LTLLAMNNQGYKNIIELISRAWRSGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ E +EG+I L+GG G + A A++ L + + F +R Y+ Sbjct: 110 QQGIAYIQREWISEY-SEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR D V LA + P+VATN+ FL ++E H+ + + + Sbjct: 169 ELQRTGRENDENYLHAAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDP 228 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YL++ EMV +FSD+PEA+ N+VEIA+RC+ +Q+ LP + E Sbjct: 229 RRERRYSDQQYLRSAEEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEG-- 286 Query: 303 IQKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E R ++ GL+ RL + + Y +RL+FEL++I +M F GYFL Sbjct: 287 --LTEAEFFRKISLEGLDWRLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDF Sbjct: 345 IVMDFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC D RD+VI YV YG + V+QIITFG++ AKA +RDV R Y D+L K+ Sbjct: 405 DIDFCMDNRDKVIAYVAENYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 464 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP P + QA+ ++ + +E D + E++ +LEGL R+ HA G+VI Sbjct: 465 IPPTPGMTL-AQALEEEPQLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTK 523 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 L+ P++ D VTQF+ +E+AGL+KFDFLGL+TLT++ + + ++ K Sbjct: 524 LTDFAPLFCDETGSGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGE 583 Query: 597 ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D++ IP DD +T+ LL T +FQLES GM+ ++ +QPD IED+IALV+L+RPG Sbjct: 584 SPLDINAIPLDDAKTFGLLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPG 643 Query: 654 PIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+++ + + NRK+G+ ++ H + P+L+ T GVI+YQEQVMQIAQ+L+GY+ Sbjct: 644 PLESGMVDDFINRKHGRAEVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYT 703 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+ Sbjct: 704 LGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHS 763 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQTAW+K HYP F+AA+M+ +MD +K+ F ++ R ++++PP VN+ Sbjct: 764 AAYAIVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEF 823 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKG+G I+ A D PF L DFC+RVD++K+N+R LE+ Sbjct: 824 HFTVDDAGRIIYGLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEA 883 Query: 885 LVFAGALDCFG-----------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929 ++ +GA D G + R + ++ K A+ N ++F Sbjct: 884 IIRSGAADSLGPTYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMAS 943 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 E+ T + R E+ LG Y +GHP+D Y+ L Sbjct: 944 EESTNDVYADFRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHFVSSRIANLKPE 1003 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +++S++ KT++G + +T + + F Sbjct: 1004 KGNQ--TIAGLIISQRIVKTKRGDNMAILTLDDRTGRMDITLF 1044 >gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4] gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4] Length = 1158 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 422/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ +GYQ L +++S+ YL Sbjct: 60 AGIKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+GG G + +A ++ E +++ F R Y+ Sbjct: 110 VAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED+EAH++ +A+ ++ Sbjct: 169 ELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + + Sbjct: 883 CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7] gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7] Length = 1158 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 422/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ +GYQ L +++S+ YL Sbjct: 60 AGIKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+GG G + +A ++ E +++ F R Y+ Sbjct: 110 VAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED+EAH++ +A+ ++ Sbjct: 169 ELLRTGRPDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + + Sbjct: 883 CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|123968448|ref|YP_001009306.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. AS9601] gi|123198558|gb|ABM70199.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. AS9601] Length = 1165 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 380/1044 (36%), Positives = 598/1044 (57%), Gaps = 28/1044 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA ++ I+++ +IA+TD ++ L+ +K GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQISKIVERACDLGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L GY+ L++L + +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I S L + ++GLI+ T G I +A VAE L +KKLF D Y+ Sbjct: 118 FSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + Sbjct: 177 IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSSMDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ +EM+ +F D + ++ + V S ++V + K + Sbjct: 237 RLRYTGTEYIKSENEMLELFKDHIDDKSIIDAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 K+ + L+ + GL RL + + + Y++RL EL +I M F YFL+V D Sbjct: 297 EDKDSFSFLKQLSNKGLLKRLKKNDLD--EVDEKYKERLTSELKIIKDMGFPDYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SMPD D DF Sbjct: 355 YIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 415 CIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVV 474 Query: 483 PAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L + D FR+ + D + + ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPYKLNEMIDKNSPSQEFRDKYINDNRIKKWVDLALRIEGTNKTYGVHAAGVVIASDP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +LVP+ R+ +TQ++M IE GL+K DFLGLK LT+++K++ + Q K++ Sbjct: 535 LDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLVNQSSGKKIN 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 594 IDELPRNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRKNG EKI HP I +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMVKHRNIFVEGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF + +N+I Sbjct: 774 TAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQI 833 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-- 892 + L+AIK +G + R+I+E F SL D C R+ S LN+R LESL+ GALD Sbjct: 834 LFGLSAIKNLGDSAIRNIIENRNSLGIFKSLADLCDRLPSNVLNKRSLESLIHCGALDEF 893 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSS 949 +R QLL L+N+ ++A ++R + N+F ++ L K + Sbjct: 894 SIDNNRAQLLSDLENVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVEDYSLI 953 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + + E+++LGFY S HPL + + T + L M+ +Q T Sbjct: 954 EKLKLEKQLLGFYLSDHPLKHLTKPAKLISPISISHLEETKDRTKVSLVGMIPDLKQITT 1013 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 RKG R+ V + + EA FP Sbjct: 1014 RKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1] Length = 1177 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 507/1069 (47%), Positives = 680/1069 (63%), Gaps = 59/1069 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P FVHL++H+ YSLLEGA+ + + +A PA+A+TDTNN+F ALEFS+ A Sbjct: 1 MTKAPKFVHLRLHTEYSLLEGAMKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D++ + + G+ P IVLL GY+ L++L S +YL Sbjct: 61 AGVQPIIGCQIDLEYE----VIAPGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G S + LS L E EGLI L+GG GP+ R AE L T ++ DRLYV Sbjct: 116 GT-SPHVTLSELAE-HAEGLICLSGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V+LAY LPLVATN+ F E YEAHD ++ VA Sbjct: 174 ELQRHPGEGGLPEAEKLTERGHVELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+TP HY K+ EM ++F+DLPEALENT+EIA+RC+F + + Sbjct: 234 YVDQSEPRRRLTPQHYFKSADEMAALFADLPEALENTIEIAQRCAFRAE--------MHD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RL I +DY+ RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRMANEGLKERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQW+K IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSV---------DRLLEISQKLEGLYRHAST 527 +IP + PVS+ I D+ RF E RL++ ++K+EGL R+AST Sbjct: 464 MIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNAST 523 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HAAG+VIGDRPL +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D Sbjct: 524 HAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAID 583 Query: 588 FLAQRGVKVD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 + G ++ ++LIP DD +Y L + T+ +FQ+ESSGM Sbjct: 584 LIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMM 643 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 AL M+PDCIEDIIALV+LYRPGP++NI + KNG + +HP +D +L ETQG+I Sbjct: 644 DALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGII 703 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+E MD ++ +F++GA +NG+ + A+ Sbjct: 704 VYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALET 763 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + Q+ Sbjct: 764 WALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEV 823 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSL 865 + I+ + P VN F V D ++ Y+L A+K VG + I+E KP+ +L Sbjct: 824 DRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATL 883 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D RVD K++ +R LE LV AGA D +R +L SLD + Y+ V ++ + Sbjct: 884 FDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVS 943 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 +F G + L + R E + +GFYFSGHPLD Y+P L++ G+ E Sbjct: 944 LFGDA-GDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAE 1002 Query: 986 SVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A ++ ++A V KQ++K+++G+R +V+ S+P YE F Sbjct: 1003 VEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDPTGLYEITIF 1051 >gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1160 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS+++G + ++ K+A PA AITD NL + F A Sbjct: 1 MAE-PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ + S+ +L GY L L+S Y Sbjct: 60 AGIKPIIGADFYVE----------SELLGDEHASLTILARNNTGYHNLTLLISEAYQKGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGLI+L+GG G + + + + ++ L +++ F Y+ Sbjct: 110 GAIGPTIKQEWLIN-HKEGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRADEESYLHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +F+D+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQYLRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L N++ GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTEDYLINRSQQGLEERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDLVIDHVADMYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R K L Sbjct: 523 TDFSPLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLNDAKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K GI+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L D C+RVD+KKLNRRV+E L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + S Sbjct: 883 IMSGAFDRLGPHRAALMSSLEDALKAADQHAKAEATGQTDMFGVLAEAPEEVERSYANIS 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y +GHP+ Y + + ++ T RG + +V++ Sbjct: 943 QWPEQIVLDGERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVIITKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3] gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3] Length = 1158 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 421/1047 (40%), Positives = 603/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ +GYQ L +++S+ YL Sbjct: 60 AGIKPIIGADFWM----------QVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + V I WL EG+++L+GG G + +A ++ E +++ F R Y+ Sbjct: 110 VQGRVVIDQEWLVTY-NEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED+E+H++ +A+ ++ Sbjct: 169 ELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P ALENTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + + Sbjct: 883 CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|171913486|ref|ZP_02928956.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM 4136] Length = 1155 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 392/1039 (37%), Positives = 593/1039 (57%), Gaps = 27/1039 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL +H+ YS+L+GA+ + +++ K + PA+A+TD NLF A+EF Q+A AGI Sbjct: 2 SASFVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC++ + + + T + LL + EGY L++LV+ +L D Sbjct: 62 KPIIGCEIYLAPGSMWEK--KDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHL-DGMYH 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ L++ +EGLI L+G SG I+ + A K + F +FG D Y+ L Sbjct: 119 KPRVDKEALKK-HSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLEL 177 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H + R ++ + + L +VA N+ FL++ED+EAHDV++ + + V + R Sbjct: 178 HNHGMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 +P+ Y K +M +F D EA + T+EIA +C+ L++ A + + + + Sbjct: 238 LHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEK-YPQFPPPEGQ 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E R G + + + + R+RLD+EL +I +M F+ YFLIV DFI+ Sbjct: 297 TREGYFRQLCEDG---MIFRYGKERAMNDAMLRERLDYELGIINKMNFTSYFLIVWDFIK 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WA+ + IPVGPGRGS AGS+ AY+L ITD+ P+RF L+FERFLNP+R+S PD DIDFCQ Sbjct: 354 WARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDFCQT 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV+ YG V+ IITFG++ AK+ +RDVGR L Y DRL K+IP + Sbjct: 414 RRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTELNI 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + A+ + + A + S +L + + LEG+ R+A HAAGIVIGD+PL +P+ Sbjct: 474 DLE-SAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNFIPL 532 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 R V QF M + G++K DFLGLKTLT+++ ++DF+ R +L +P DD Sbjct: 533 TRGS-EGEVVAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRFPDFNLDAVPLDD 591 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 TY +L T+ +FQ+ES GM ++PD IE+IIAL++LYRPGP+D I + RK Sbjct: 592 KTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDLIPDFIKRK 651 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G++++ +HPL++ + KET G++IYQEQV + A LL+GYSL AD+LRRAMGKK EEM Sbjct: 652 KGEQRVEYLHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAMGKKKPEEM 711 Query: 726 DKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +KQ+ F+ G + A +IF+LL KFA YGFNKSH+AAY +++Y+TA++K +YP Sbjct: 712 EKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRTAYLKANYP 771 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYY 837 VEF+AA ++ E+++ +K+ F + ++ I I+PP VN + F N I Y Sbjct: 772 VEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGSDVPNAIRY 831 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA+K VG + + PF SLEDFC+RVDS+ +N+R++E L+ G D G Sbjct: 832 GLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKVGGFDWTGQ 891 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--KFSVENSSVRFEN 954 R + LD + A +K R ++F + + + Sbjct: 892 DRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDTMGATKNTLAKSAGPPPWKKEELMAF 951 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013 E+ +LGF+ SGHPLD Y+ I I + ++R+A ++ + K T+K + Sbjct: 952 EKELLGFFVSGHPLDNYRHIYESKYITRIADVQEVKEERVSLRVAGLIQRLEVKYTKKDN 1011 Query: 1014 RIGWVT--FSEPAKEYEAN 1030 R + T + + E Sbjct: 1012 R-AFATFALEDFSGTVEVI 1029 >gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92] gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92] Length = 1163 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 409/1052 (38%), Positives = 596/1052 (56%), Gaps = 42/1052 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P+FVHL+VH+ +SL++G + + ++ + PA+ +TD N F ++F + A Sbjct: 1 MTD-PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI G L ++ D P I LLV A+GY L+EL+S+ Y Q Sbjct: 60 NGIKPICGSDLWVENTDE---------PGGEPYRITLLVRNAQGYLNLMELISQAYAEGQ 110 Query: 125 G--KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + W+ E EGLI L+G G + RA A + L + +F D Sbjct: 111 NIIPDMALVKPEWV-EAKAEGLIALSGAKKGEVGRAILAEK-GQAPEVLQRWMGVFKDSF 168 Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR D V+LA PLVATN +F+ +D+EAH+V + + S + Sbjct: 169 YLEVQRTGRVGDEQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLE 228 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP+ + Y +++ EM ++FSD+P AL+N+VEIA+RC+ +++ LP++ E Sbjct: 229 DPTRPKEYSEQQYFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEG 288 Query: 301 DDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + ++ R + GLE RL + Q+Y RL+FEL++I +M F GY Sbjct: 289 MLM----DDFFRKVSFDGLEERLEILLDRDDPEYDAKRQEYIDRLEFELDIIIQMGFPGY 344 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI+W K+N +PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMP Sbjct: 345 FLIVMDFIKWGKENGVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMP 404 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC D RD+VI YV YG + V+QI+TFG++ AKA +RDV R P+ DRL Sbjct: 405 DFDIDFCMDNRDKVIDYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADRLS 464 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP +P + +A+ + E + +++++ KLEG+ R HA G+VI Sbjct: 465 KLIPFEPGITLK-KALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVIAP 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQ 591 L+ Y D + VTQF+ +E+AGL+KFDFLGL+TLT++ +L Q Sbjct: 524 TKLTDFAATYCDEEGNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRDKQ 583 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++LI +D +T+ LL T +FQLESSGM+ + + P EDI+ALV+L+R Sbjct: 584 GEEPLDIALIDLEDKKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVALFR 643 Query: 652 PGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGP+ + +V + + + P+L+ T G+I+YQEQVMQIAQ+++G Sbjct: 644 PGPLQSGMVDDFINRKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAG 703 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 Y+L AD+LRRAMGKK EEM KQ+ F+ G+ +NGI + +A NIF+L+ KFA YGFNKS Sbjct: 704 YTLGGADMLRRAMGKKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFNKS 763 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA++SYQTAW+K HYP F+AA M+ +M N +K+ F ++ R I P+VNT Sbjct: 764 HSAAYALVSYQTAWLKAHYPAPFMAAVMSSDMQNTDKVVIFIEECRNMGIPPALPNVNTG 823 Query: 825 CVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882 F V D I Y L AIKGVG I+EA A+ F+ L DFC RV +KKLN+RVL Sbjct: 824 EYMFTVNDEGVIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKRVL 883 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITL 940 E+LV +GA+DC G R L +++ + K A KN ++F + Sbjct: 884 EALVRSGAVDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEAESDRCTYEDY 943 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 R E+ LG Y +GHP+D Y+ L+ + E G ++A + Sbjct: 944 RNVRSWTDKERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVELQPAR-GQTQKMAGL 1002 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV + KKT+KG + +VT + + + F Sbjct: 1003 VVDLRLKKTKKGDNLCFVTLDDRSARIDVTLF 1034 >gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25] gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25] Length = 1173 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 414/1065 (38%), Positives = 597/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LL GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDNPLSRISLLAMNGVGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 S+ I W+ E EGLIML+ G I A + Q AE + ++F DR Y+ Sbjct: 109 RNGSIIIEREWVAE-ANEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA PLVATN+ F+ +ED+EAH+ + + + Sbjct: 168 EIQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 RRSKNYSEEQYLKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + ++++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + + H ++F Sbjct: 883 LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942 Query: 930 EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEEDADVYGNHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|119946582|ref|YP_944262.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37] gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37] Length = 1173 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 411/1048 (39%), Positives = 589/1048 (56%), Gaps = 38/1048 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 K P F+HL+VHS YS+++G + ++ K AA PA+AIT+ N ++F A A Sbjct: 11 TKQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGAAHDA 70 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PI+G + + + I L GY+ L EL+S+ YL Sbjct: 71 GIKPIVGVDFWV----------KSELLADEQFRITALAMNNAGYKNLTELISKAYLRGHV 120 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I WL E +G+I+L+GG G + + + ++A + + +++ F R Y+ Sbjct: 121 GGRAVIDQDWLAE-HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIE 179 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R +R + + A ++LP+VATN +F + Y+AH++ + + + Sbjct: 180 LIRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNR 239 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + + YL+++ EM +F+D+PEAL+N+VEIA+RC+ L++ + + Sbjct: 240 RPKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGE-----YFLPDFPTG 294 Query: 304 QKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + + GLE RLA + A Y QRL EL+VI M F GYFLI Sbjct: 295 DMSITDYFCDVSRKGLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGFPGYFLI 354 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD Sbjct: 355 VMEFIQWSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERVSMPDFD 414 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ +KA +RDVGR L PY VD + KLI Sbjct: 415 IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDGISKLI 474 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P +S +A A++ R +E V L+++ + LEG R+A HA G+VI + Sbjct: 475 PPTPGMTLS-KAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVVISPTTI 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD Sbjct: 534 TDFSPLYCDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHKHARGEE 593 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + I + + LL T +FQLES GM+ + +QPD ED+IALV+L+RPGP Sbjct: 594 TLFIEKICLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGP 653 Query: 655 IDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + HP ++ +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 654 LQSGMVDNFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQVLSGYTL 713 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+E F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 714 GGADMLRRAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGFNKSHSA 773 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKT YP F+AA M+ +MDN EKI + + + + PP VN Sbjct: 774 AYALVSYQTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDVNEGLFK 833 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + RI Y + A+KGVG I+EA A F L DFC+R+D K N+R+LE L Sbjct: 834 FNVDPDLRIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNKRILEKL 893 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + AGALD G R L+++L N K A +K + ++F + Sbjct: 894 ILAGALDKLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLTTDSEEIADKFSSVD 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 E+ LG Y +GHP++ Y+ +R + VA RG N R+A +++S Sbjct: 954 KWPEKQWLAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRVAGLILSM 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+ G R+G +T + + E F Sbjct: 1014 RIMVTKAGKRMGIITLDDKSARMEITVF 1041 >gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM 3043] gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 1168 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 413/1056 (39%), Positives = 605/1056 (57%), Gaps = 47/1056 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL+VH+ YSL++G + L +++ PA+A+TD +NLF ++ + A Sbjct: 1 MTTP--FVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++P+IG L ++ + + + LL +GY+ L EL+S+ + Q Sbjct: 59 AGLKPVIGADLWMENPHDEEHP----------YRVTLLAMDNDGYRHLTELISQGWSEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + W+ + GLI L+G G I R Q A + +K F R Y+ Sbjct: 109 QRGQGILKKEWIFAR-SAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYL 167 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +D V LA E P+VATN+ FL+ EDY AH+ +A+ + Sbjct: 168 EVQRTGREHDEECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + + YLK+ EM +FSDLPEALEN+V IA RC+ + + LP + + Sbjct: 228 RRERRYSEEQYLKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMS 287 Query: 303 IQKEEENELRNKAVAGLEV---------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + R + GL + YR+RLDFELN+I M F Sbjct: 288 M----DGFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGF 343 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+ Sbjct: 344 PGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERV 403 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DFC ++RD VI YV ++YG + V+QI+TFG++ AKA +RDV RA PYS D Sbjct: 404 SMPDFDVDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGD 463 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +L KLIP + + +AI + +E +D + +++ KLEG+ R HA G+V Sbjct: 464 KLSKLIPFEVGMTL-AKAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVV 522 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589 I L+ P+ D V Q++ IE+AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 IAPTKLTDFSPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVR 582 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + +D++ IP DD T+ +L T +FQLES GM++ ++ +QPD +ED+IALV+ Sbjct: 583 AREGQGPLDIASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVA 642 Query: 649 LYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701 L+RPGP+ + + + NRK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ+ Sbjct: 643 LFRPGPLQSGMVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQV 702 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL +AD+LRRAMGKK EEM KQ+ F+ G + NGI K +A N+F+L+ KFA YGF Sbjct: 703 LAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGF 762 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAY ++SYQTAW+K HYP F+AA ++ EMDN++K+ ++ R + + PP V Sbjct: 763 NKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDV 822 Query: 822 NTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879 N F V + R+ Y L AI+GVG I+EA AD F L DFC RVD+K+LN+ Sbjct: 823 NMGSYKFTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNK 882 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSD 936 R LE+L+ +GALD G +R L+ SL+ K A N ++F E Sbjct: 883 RTLEALIRSGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDA 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 R E+ LG Y +GHP+D Y+ L++ + G + R Sbjct: 943 YADYRGVREWTDKERLAGEKDTLGLYLTGHPIDEYESELKRFVSTRIVDLKPQR-GESQR 1001 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A +VV+ + K+++G + ++T + EA+ F Sbjct: 1002 VAGLVVAMRTMKSKRGDTMAFITLDDRTGRIEASLF 1037 >gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025] gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC 17025] Length = 1163 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 505/1058 (47%), Positives = 665/1058 (62%), Gaps = 48/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + ++ A PA+A+TDTN +F+ALEFS A Sbjct: 1 MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+ + + G+ P P +VLL GY L++L S +YL + Sbjct: 61 AGIQPIVGCQVSVAYE----TAALGERAKPPAP-VVLLAQNEAGYGNLMKLSSCLYL-GK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ L L E GLI LTGG GP+ R AE L ++ RLYV Sbjct: 115 EGALPQVTLEEL-ERHASGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V+LAY LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233 Query: 238 TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V Q R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F Sbjct: 234 AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +E ELR +A GL RLA I +DY RL FEL +I +M F GY Sbjct: 286 PPILPRFADDEVEELRRQAKGGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS+Q +AD+ R REA + V RLL+ ++EGL R+ASTHAAG+VIG Sbjct: 464 KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 524 DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + + IP +D Y L T+ +FQ+ESSGM AL M+P Sbjct: 584 LHMAADGRVLYDPPPGAENDIGHIPLEDKAAYELYAQAKTVAVFQVESSGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY K+G ++ S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPVYCEVKHGLRELESLHPTIDPILKETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756 IAQ+++GY+L AD+LRRAMGKKI EEM K++ +FI GA K +GI A +F+LL KF Sbjct: 704 IAQVMAGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDTKKAGEVFDLLEKF 763 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++ + I+ Sbjct: 764 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + P VN F V D + Y+L A+K VG R I+EA D+PF +L D RV+ KK Sbjct: 824 VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKK 883 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++ ++LD + Y+ + + R + ++F E G Sbjct: 884 IGKRPLEMLARAGAFDALDRNRARVFEALDALVSYSAAIHEARNSSQVSLFG-EAGADIP 942 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994 + L R E + +GFY SGHPLD Y L++ + + Sbjct: 943 EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA V S+Q+KK+ KG+R +V S+P YE F Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040 >gi|78184874|ref|YP_377309.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9902] gi|78169168|gb|ABB26265.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9902] Length = 1172 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 383/1053 (36%), Positives = 585/1053 (55%), Gaps = 41/1053 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L +++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L + +EGLI+ T G I +A +VA ++ +FG+ Y+ Sbjct: 118 FSRACVDKDLL-QRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR S++V++A ++ LVATN++ +L+++D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298 R R T Y+K EM +F+D +A+ NT ++A + + +PRF Sbjct: 237 RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + LR + GL RL + A++Y R+ EL ++ +M F YFL Sbjct: 297 DG----HTAVTYLREVTLQGLRDRLE--LKSDDPIAENYADRMSHELEIMEQMGFPTYFL 350 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D+I++A++ NIPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD Sbjct: 351 VVWDYIRFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DFC +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KL Sbjct: 411 DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470 Query: 479 IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP P L+A+ + + FRE DP V R ++++ ++EG + HAAG+VI Sbjct: 471 IPVVRGKPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVI 530 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593 PL QLVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G Sbjct: 531 AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++D +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPG Sbjct: 590 TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649 Query: 654 PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+D I + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD Sbjct: 650 PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EM K + F+ GA K G+ ++ +F+ + FA+Y FNKSH+ AY Sbjct: 710 LLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++YQTA++K HYPV ++AA +T+ +K++++ + I++MPP +N +DF Sbjct: 770 VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +RI + L+A++ +G R ++E+ + PF SL D C R+ S LNRR LESL+ GA Sbjct: 830 GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889 Query: 891 LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940 +D +R QL+ LD + +A K+R + N+F D Sbjct: 890 MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 S + E+ ++GFY S HPL P R + G + M Sbjct: 950 APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +Q TRKG R+ + + EA FP Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|253988140|ref|YP_003039496.1| DNA polymerase III subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica] Length = 1160 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 605/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS YS+++G + ++ K+A PA AITD NL + F A Sbjct: 1 MAD-PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG ++ + ++ +L GY L L+S Y Sbjct: 60 AGVKPIIGADFYME----------SELLGDEYANLTILARNNTGYHNLTLLISEAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGLI+L+GG G + + + + ++ L +++ F D Y+ Sbjct: 110 GAAGPTIKQKWLVSR-KEGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYL 168 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ F+ +ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRVDDENYLHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +FSD+PEALEN+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQYLRSEQEMCELFSDIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + EN L K+ GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GEMSTENYLIEKSKQGLEERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDLVIDHVADIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDPGMTLEKAFVA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R Sbjct: 523 TDFAPLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D++++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLNDNKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA K GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA D F L D C+RVD+KKLNRRV+E L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + S Sbjct: 883 IMSGAFDRLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEEVERSYANVS 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + ++ T RG + +V++ Sbjct: 943 QWPEQVVLDGERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 SKVIMTKRGNRIGLCTLDDRSGRLEVMLF 1031 >gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581] gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581] Length = 1169 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 413/1059 (38%), Positives = 601/1059 (56%), Gaps = 51/1059 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL+VHS +SL++G + L ++ PA+A+TD NLF+ +++ A Sbjct: 1 MTTP--FVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++P+IG L + + + + LL A GY+ L EL+SR ++ Q Sbjct: 59 AGLKPLIGSDLWLANPHDEEHP----------YRLTLLAMDATGYRNLTELISRGWVEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SW+ +EGLI L+GG G I R + A L + F R Y+ Sbjct: 109 RQGRALLERSWVMA-QSEGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYL 167 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + V LA + P+VATN+ FL ED+ AH+ +A+ + Sbjct: 168 ELTRTGRALEEECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDP 227 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + YLK EM +FSD+PEALEN+V IA RC+ +++ LP + E Sbjct: 228 RRERHYTEEQYLKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEGM- 286 Query: 303 IQKEEENELRNKAVAG---------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 +E R + G R + YR+RLDFEL++I +M F Sbjct: 287 ---TQEEFFRKISHDGLTERLDFLYPAERYPRDGAEYAEIDARYRKRLDFELDIILQMGF 343 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFLIV DFIQWAK N++PVGPGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+ Sbjct: 344 PGYFLIVMDFIQWAKDNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERV 403 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DFC ++RD VI YV +YG V+QI+TFG++ AKA +RDV RA PYS D Sbjct: 404 SMPDFDVDFCMEKRDRVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGD 463 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 +L KLIP + + +AI D+ + +E AD + E++ KLEG+ R HA G+V Sbjct: 464 KLSKLIPFEVGMTL-GKAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVV 522 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589 I L+ P+ D Q++ IE AGL+KFDFLGL+TLT++ +++ + Sbjct: 523 IAPTKLTDFSPLLCDEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVR 582 Query: 590 -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 A+ +++ IP DD T+ +L T +FQLES GM++ ++ + PD +ED+IALV+ Sbjct: 583 AARGEEPLNIDAIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVA 642 Query: 649 LYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701 L+RPGP+ + + + NRK+G+ +I HP + P+L+ T G+I+YQEQVMQIAQ+ Sbjct: 643 LFRPGPLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQV 702 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 ++GYSL +AD+LRRAMGKK EEM KQ+ F+ G ++NGI K +A NIF+L+ KFA YGF Sbjct: 703 MAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGF 762 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA++SYQTAW+K HYP F+AA ++ EMDN++K+ ++ R + + PP+V Sbjct: 763 NKSHSAAYALVSYQTAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEECRSLGLTVTPPNV 822 Query: 822 NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879 N F V + R+ Y L AI+GVG I+EA A+ F L DFC RVD +++N+ Sbjct: 823 NVGGYKFTVDAEGRVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNK 882 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---- 935 R LE+L+ AGALD G SR L SLD+ K A + N+ ++F Sbjct: 883 RTLEALIRAGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDA 942 Query: 936 --DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + + R E+ LG Y +GHP+D Y+ L + + + Sbjct: 943 ADAYADYRRVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRFVSTRIVDLKPSREPQ 1002 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + A +VV + K+++G + +VT + EA+ F Sbjct: 1003 RV--AGLVVGVRTMKSKRGDTMAFVTLDDRTGRIEASLF 1039 >gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227] Length = 1150 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 423/1037 (40%), Positives = 610/1037 (58%), Gaps = 38/1037 (3%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 HS YS+++G ++ K AA PA+AITD NL ++F AGI+PI+G + Sbjct: 2 HSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFN 61 Query: 77 IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136 + Q + + +L + GYQ L L+S+ Y G I WL Sbjct: 62 V----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 111 Query: 137 QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY- 195 E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 112 IEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 170 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYL 254 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+ Sbjct: 171 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 230 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314 ++ EM +F+D+PEAL NTVEIA+RC+ +++ + E+ L + Sbjct: 231 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKR 285 Query: 315 AVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 A GLE RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N Sbjct: 286 AKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNG 345 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI Sbjct: 346 VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 405 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A Sbjct: 406 EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKA 464 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 + + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D Sbjct: 465 FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 524 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDH 606 PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD Sbjct: 525 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 584 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664 +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +R Sbjct: 585 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 644 Query: 665 KNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 K+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGK Sbjct: 645 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 704 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+ Sbjct: 705 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 764 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838 K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y Sbjct: 765 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 824 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G Sbjct: 825 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ SL + K A K ++F + + + V + E+ Sbjct: 885 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 944 Query: 957 RVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 LG Y +GHP++ Y + + G ++ T RG A +VV+ + T++G+RI Sbjct: 945 ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRI 1004 Query: 1016 GWVTFSEPAKEYEANFF 1032 G T + + E F Sbjct: 1005 GICTLDDRSGRLEVMLF 1021 >gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C] Length = 1140 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 575/1022 (56%), Positives = 740/1022 (72%), Gaps = 8/1022 (0%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 HS+YSLLEGAL + I+ +D+ PAIAITDTNNLF ALEFSQ + GIQPIIGCQL Sbjct: 2 HSAYSLLEGALKIKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQPIIGCQLA 61 Query: 77 IDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 ID D + K + S IVL ++ GY L+ LVSR YL I + Sbjct: 62 IDFGDENCNSPLTKLRHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTDLPHIKADF 121 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195 L EG+I LTGG GPI+ A + + A +RL KK+FGDRLY+ LQRH YDR Sbjct: 122 LLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYIELQRHGSYDRK 180 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 E +++LAYT+E+PLVATN + FL++E Y AHD LMAVA VVS +R RVT DHYLK Sbjct: 181 VEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGKVVSNPNRKRVTLDHYLK 240 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEEENELRN 313 ++ EMVS+F DLPEALEN+VEIA RC + PILP FIE+ D + E EL + Sbjct: 241 SQDEMVSLFFDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLEAEAKELLD 300 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 +A AGL++RL +A+GY DY QRL++E++VI RM+FSGYFLIV+DFI+WAK ++IP Sbjct: 301 QAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIKWAKAHDIP 360 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY Sbjct: 361 VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQERREEVIRY 420 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAI 492 VQ KYG ++VAQIITFG LQA+A LRDVGR L++PY VD L KL+P P + QAI Sbjct: 421 VQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGSNIELAQAI 480 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD Sbjct: 481 IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612 +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +D TY ++ Sbjct: 541 MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLNDEATYAMM 600 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK+ +E+I Sbjct: 601 SRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIRKHKEEEIT 660 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF Sbjct: 661 SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRARF 720 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 +SGA G+ K A IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+PVEFLAASM Sbjct: 721 VSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHPVEFLAASM 780 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852 T +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KGVG H Sbjct: 781 TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840 Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 I+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL SL + A Sbjct: 841 IVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLASLVTLNARA 900 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + N ++ +IF G I L + S + + + E +V+GFYFS HPL Y+ Sbjct: 901 LRILDNNSSGQVDIFEMVGGLKEPLI-LSQASPWSVAEKLHYEFQVIGFYFSAHPLSEYQ 959 Query: 973 PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L K ++ + A+++G RLA VV+KQ +KT+ G ++G + FS+ + +YEA Sbjct: 960 DVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSDTSGQYEAV 1019 Query: 1031 FF 1032 F Sbjct: 1020 IF 1021 >gi|332180545|gb|AEE16233.1| DNA polymerase III, alpha subunit [Treponema brennaborense DSM 12168] Length = 1179 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 362/1037 (34%), Positives = 566/1037 (54%), Gaps = 25/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+GA + ++ + A+A+TD N+F AL F Q GI+P Sbjct: 28 DFVHLHVHSDYSLLDGAAKVKTLVARAKELGMSALALTDHGNMFGALRFEQLCHKEGIKP 87 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+ + + ++G ++L+ EGY+ L+ L SR Y + Sbjct: 88 LVGCEFYVAGSSRHE--HKGTEQGNKYYHLILIAKNVEGYRNLMMLTSRSYT-EGMYYKP 144 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI ++E + GL+ L+ +G + + N ++ AE + ++ +FG + ++ LQ Sbjct: 145 RIDEELIREY-SGGLVCLSACLAGQLPQLLLNNQNKEAEDLVRRYRDIFGAENYFIELQD 203 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + +++ +A +P+V TN+ + +EDY A DVL+ + R + Sbjct: 204 HGIAQQKEVAPKLIDIARKLGVPMVVTNDIHYCLKEDYIAQDVLVCIGTKKTRDDPRRMK 263 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQ 304 + Y+K EM +F PE +ENT +A C + + + + Sbjct: 264 FEGTEFYMKTGEEMAQLFPAYPEMIENTKRVADMCDLTIPQFSTKELKDCLPVYQIPPEF 323 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K +++ +R+ GLE R + ++ RQR ++EL +I +M FSGYFLIV DFI Sbjct: 324 KTQDDYVRHLVYKGLEKRYPE-------ITEEIRQRAEYELGIIFQMGFSGYFLIVWDFI 376 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK+N+IPVGPGRGSGAGS+ AYA+TITDIDP RF+L+FERFLNP+R+SMPDFD+D C Sbjct: 377 NWAKQNDIPVGPGRGSGAGSLVAYAMTITDIDPFRFNLIFERFLNPERISMPDFDVDICY 436 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + R +VI Y + KYG +V I+TFG+L+AKA ++DV R L +P S+V+ L KL+P+ P Sbjct: 437 EGRQDVIEYTRRKYGDPQVGHIVTFGTLKAKAVIKDVARVLDIPLSEVNILTKLVPDGPK 496 Query: 485 HPVS-----LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + I + DP L ++ KLE R+ S HA+GIVIG L Sbjct: 497 VHLKDAFEVNEKIPGSGQLAP-YRNDPRYKELFDLCFKLEDNNRNTSLHASGIVIGKSKL 555 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y+D ++ Q+ M IE GL+K D+LGLKTLTL++ + + +R Sbjct: 556 PEWAPVYKDSKTGKVAVQYTMDIIEPCGLVKMDYLGLKTLTLIKYAERIIRKRPGYEQFR 615 Query: 600 LIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 D +T+ L T +FQ ES GM++ L+ QP +EDI+AL +LYRPGP+D Sbjct: 616 ADEVSETDEKTFDLFCAGQTSAVFQFESPGMQKILKQAQPRRLEDIVALNALYRPGPMDY 675 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y K KI P + +L+ET GV++YQEQVMQ+AQ ++GYSL AD+LRRAM Sbjct: 676 IPQYIEGKFDSSKITYPDPCLKSILEETYGVMVYQEQVMQVAQRIAGYSLGGADMLRRAM 735 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK E M +K +FI GA KNG + A +IFE++ FA YGFNKSHAAAY+V++Y+TA Sbjct: 736 GKKKVEVMAAEKTKFIEGAVKNGFTAEHAADIFEIMIPFAGYGFNKSHAAAYSVVAYRTA 795 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K ++P EF+AA++T E+ + +K+ ++ + R ++I PP +N F V D RI + Sbjct: 796 YLKANFPAEFIAANLTNEITSTDKLPEYITEGRSMGLEIDPPDINRSDKVFDVVDGRIVF 855 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L IKG+G A I+ + P+ +F RV++ +N++ +E L+ GA D Sbjct: 856 GLLGIKGLGEAAADAIIAERKANGPYTDFMNFLDRVNTHDVNKKAIEVLIKTGAFDKLDK 915 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R L +++ YA+ + ++F E+ E+ Sbjct: 916 NRATLTANMERAIDYAESKKSAGRFGQVSLFEDSGVQEFADFKYEEQPEIPVMEMLNMEK 975 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 ++G Y SGHPLD Y+ ++ G ++ ++ + + T+KG+++ Sbjct: 976 ELIGCYVSGHPLDKYRETIKNAATVTSATMGRAQEGKQYQIIGLLKNIRTITTKKGAQMA 1035 Query: 1017 WVTFSEPAKEYEANFFP 1033 + + ++ FFP Sbjct: 1036 FAQLEDLNGSFDLTFFP 1052 >gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17] gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17] Length = 1161 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 406/1051 (38%), Positives = 596/1051 (56%), Gaps = 42/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +FVHL++HS +SL++G + + ++ ++ PA+ +T+ +N+FS + F + A Sbjct: 1 MTAQ-TFVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG L + D + + LL S +GY L E+VS Y Q Sbjct: 60 AGVKPIIGADLWFENPDEPE----------SPFRTTLLASNNDGYLNLTEIVSLGYTEGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E ++GLIML+GG G + +A + ++A +R ++ L+ Y+ Sbjct: 110 RFGKPIIKREWL-EARSQGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR D V LA LP+VATN+ F+ ED+EAH+ + + S + Sbjct: 169 ELQRTGRAGDEDCLHLNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDP 228 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + +L++ EM+ +F+D+PEA+ENT+ IARRCS +++ LP + E Sbjct: 229 RRDRRFSDQQHLRSAEEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGM- 287 Query: 303 IQKEEENELRNKAVAGLE----VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + R + GLE L + Q Y RL FEL++I +M F GYFL Sbjct: 288 ---TMNDYFRRVSEEGLEDRLAKTLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI+WAK N +PVGPGRGSGAGS+ AYA ITD+DPL++ LLFERFLNP+R+SMPDF Sbjct: 345 IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D+L K+ Sbjct: 405 DVDFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 464 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +A+ + +E D + E++ KLEG+ R+A HA G+VI Sbjct: 465 IPFEVGMTL-AKAVEQEPSLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTK 523 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596 ++ P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + R K Sbjct: 524 ITDFSPLYCDDDGGSLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWALKMINPRREKRGL 583 Query: 597 ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 D+S IP DD ++ +L T +FQLES GM+ + +QPD +ED+IALV+L+RPG Sbjct: 584 KPLDISEIPLDDPASFVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 643 Query: 654 PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+ + +V + + + + P+L+ T GVI+YQEQVMQIAQ++ GYS Sbjct: 644 PLQSGMVDDFIDRKHGKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYS 703 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQK+ F+ G + N I K +A NIF+L+ KFA YGFNKSH+ Sbjct: 704 LGNADMLRRAMGKKKPEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHS 763 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+K HY EF+AA +T +M N +K+ ++ R + ++ P V+T Sbjct: 764 AAYALVSYQTLWLKAHYTAEFMAAVLTADMQNTDKVVTLVEECRSLKLDLVLPDVSTSEY 823 Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884 F D ++ Y L AIKG+G I+ A + PF L DFC RVD KK+N+R LE+ Sbjct: 824 AFTANDDGQVVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEA 883 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 ++ AGA+D G R QL+ S++ A +N ++F T +D + Sbjct: 884 MIRAGAMDKLGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVA 943 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 R + E+ LG Y +GHP D Y+ +R+ + + R+A +V Sbjct: 944 DIREWPEKKRLKGEKDTLGLYLTGHPFDEYEREVRRFVRSSIADLK--PNKSPQRVAGLV 1001 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+++ KTR GS + ++T + + EA F Sbjct: 1002 VAQRTMKTRTGSTMCFITLDDRSGRIEATLF 1032 >gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3] gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 1187 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 503/1078 (46%), Positives = 690/1078 (64%), Gaps = 68/1078 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL++H+ YSLLEGA+ L + PA+A+TDTNNLF+ALEFS A Sbjct: 1 MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMGMPAVAVTDTNNLFAALEFSVGASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQLD+ G+ P P P +VLL GY+ L++L S +Y +D+ Sbjct: 61 AGIQPIIGCQLDLAY----VAAMPGERPKPPAP-LVLLAQNEAGYENLMKLNSCLY-VDK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L+ +G +GLI L+GG GP+ R AE + +F DR Y+ Sbjct: 115 GGQLPQVTLEELEALG-DGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADRFYI 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY LPLVATN+ F YEAHD L+ +A Sbjct: 174 ELQRHPGEGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIADGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HYLK+ EM ++F+DLPEA+ENTVEIARRC+F+ + Sbjct: 234 YVDQAEGRRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A GL+ RLA I A+DY++RLDFEL++I M F GYF Sbjct: 286 PILPKFADDEVVELRRQANEGLQARLA--VIPHAVSAEDYQKRLDFELDIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R RE + VDRLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HVAADGRQLYDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F +GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-------------------- 857 PP VN F V + Y+L A+K VG R ++E Sbjct: 824 PPCVNRSQATFDVVGGELVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARRPDR 883 Query: 858 -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 ++PF +L DF RVD KK+ +R LE + AGA D +R ++ S++ + Y+ + Sbjct: 884 AEERPFVTLFDFARRVDLKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSGAIF 943 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + +++ ++F E G + L + + R E + +GFY SGHPLD Y P L+ Sbjct: 944 EQKSSNQVSLFG-EAGDDLPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALK 1002 Query: 977 KMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G+ +E R + ++A +V +Q++K+ +G+R + S+P +E F Sbjct: 1003 RKGVLTLDEVTEQARSGPVLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTLF 1060 >gi|168181975|ref|ZP_02616639.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf] gi|237796833|ref|YP_002864385.1| DNA polymerase III DnaE [Clostridium botulinum Ba4 str. 657] gi|182674724|gb|EDT86685.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf] gi|229263138|gb|ACQ54171.1| DNA polymerase III, alpha subunit [Clostridium botulinum Ba4 str. 657] Length = 1185 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 373/1071 (34%), Positives = 594/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +EA + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALGLNPELKEAYDNEERVKELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA Sbjct: 596 IRENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGN 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN KI ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPTYIANKNNPSKIKYSTQKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M+++++ FI G NGI + +A N+F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERKSFIYGNEKEGVKGCINNGIDEKVANNLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+S+QTA++ +YP EF+AA + + +++ + A IQI+ P Sbjct: 776 AFNKSHAAAYAVVSFQTAYLMRYYPTEFIAAMLNSVKGDSDRVSFYVNFAETLGIQIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936 +R++ESL+ GA DC R ++L + I Q +++ N+F Sbjct: 896 KRLVESLIKTGAFDCLNVYRSKMLAVFEKIMDGIQKQKRSNIEGQVNLFMDIMDNKESSM 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIITKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTMNSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6] gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6] Length = 1173 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 419/1065 (39%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LL GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDNALSRISLLAMNGVGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 SV I W+ E +EGLIML+ G I A + Q AE + ++F DR Y+ Sbjct: 109 RNGSVIIEREWVAE-ASEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA PLVATN+ F+ +ED+EAH+ + + + Sbjct: 168 EVQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 RRSKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VN Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA D PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + + H ++F Sbjct: 883 LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEEDADVYANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT] gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT] Length = 1149 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 423/1039 (40%), Positives = 618/1039 (59%), Gaps = 35/1039 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K PSF+HL+ HS YS+++G + + + + + ADQ PA+A+TD +NLF A++F + A Sbjct: 1 MSK-PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++P+IG + ++ + ++LL + GY RL EL+SR +L +Q Sbjct: 60 KGVKPLIGADIWLENESKRDQP----------YRLLLLCHSHVGYLRLCELLSRAFLHNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL+E GTEGLI+L+G +G I +A + A+ + LF R Y+ Sbjct: 110 YRGRAEIKREWLREGGTEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYI 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR + + LA ELP+VAT+ F++ +D++AH+ + +A V++ Sbjct: 170 ELQRAGHPQQEAYIASALALASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADN 229 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ TP+ Y K++++M +F+D+PEAL N+VEIA+RC+ L + LP+F + Sbjct: 230 RRPKLFTPEQYFKSQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGES 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + L +A AGLE RL +G +Y RL FE N+I +M F GYFLI Sbjct: 290 L----DEYLVAQAKAGLEERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DP+R++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLI Sbjct: 406 IDFCQEGRDRVIDYVKRKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLI 465 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 PN+ +S + + + +E R + V LLE++ +LEGL R+ HA G++I + Sbjct: 466 PNELGISLSEA-LEKEPQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKI 524 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 S P+Y + V+Q++ +E GL+KFDFLGL+TLT+L +L+ + + L Sbjct: 525 SDFSPVYCQASGESVVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLE 584 Query: 600 LI-----PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + P DD +Y LL T +FQLES GM+ L+ +PD EDIIALV+LYRPGP Sbjct: 585 PLDFETLPIDDKASYQLLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGP 644 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+G +++ HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LR Sbjct: 645 MDLIPDFCRRKHGLQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLR 704 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ FI GA KNG S+ A +F+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 705 RAMGKKKPEEMAKQRSIFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAY 764 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833 QTA++K HYP FLAA+M+ +M+N + I F D ++++PP +N FK + Sbjct: 765 QTAYLKAHYPAAFLAATMSADMNNTDNIHLFYDDCIFNGLEVLPPDINASEYRFKPINAK 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y L AIKG G I+ A PF L DFCSR+D +K+NRRV+ESL+ AGA D Sbjct: 825 QILYGLGAIKGTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 +R LL + A+ + + +++F + L + R Sbjct: 885 KLEPNRAALLAGVSLAISAAE--QSGAASGQDSLFGSVIDSAVH--VLPETPPWTEKQRL 940 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LGFYFSGHP Y+ + LA +V+ + + T +G Sbjct: 941 QEEKAALGFYFSGHPYADYQKEVATFVRSNLANLK--PSDQPQLLAGVVMGVRIRMTGRG 998 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 + VT + A + Sbjct: 999 K-MAIVTLDDMAGRVDIVV 1016 >gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae B728a] Length = 1173 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|203288019|ref|YP_002223034.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1] gi|201085239|gb|ACH94813.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1] Length = 1144 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 397/1034 (38%), Positives = 600/1034 (58%), Gaps = 22/1034 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VHS +SLL+GA + +I+ K IA+TD NLF A++F ++A Sbjct: 1 MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + + LK + ++LL +GY+ L++L S YL + Sbjct: 61 AGIKPIIGIEAYMS--NTLKYIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ L + +EGLI ++ G I + N A+ +L FK FGD Y+ Sbjct: 118 FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH + +++ + ++ L +N+S ++++ED A D+++ + S Sbjct: 177 ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301 R ++ T + YLK+ EM +F DLPEAL NT++IA +C+ F ++ PI P + E Sbjct: 237 GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D Q L + + GL+ R A + ++R +EL+ I M F YFLIV Sbjct: 297 DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+ Q + + KLIP+ Sbjct: 407 FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + D ++ P + L+E + LEG+ RHASTHAAGIVI L+ Sbjct: 467 GP--KVSLREVLKDKVLKKYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + ++ I Sbjct: 525 YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D +T+ +L+ + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 585 SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 645 VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM++ K FI GA + G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N EK+ + ++ + I ++ P +N DF+V + I Y L Sbjct: 765 NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I+ + + S EDF RVD K +N++ LE+ + +G D G +R Sbjct: 825 IKNIGELMVDLILNERQENGEYKSFEDFIKRVDKKVINKKFLEASIKSGLFDSLGQNRRT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+++LD + + + + ++FA + + F + E+ +LG Sbjct: 885 LIENLDKLIAFVLENKNAKKQGQNSLFA-SQNILEETFNYNLFEEYSYLELLGFEKELLG 943 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019 FY SGHPLD YK L + +A+ R ++ A + + +K + R+ + Sbjct: 944 FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003 Query: 1020 FSEPAKEYEANFFP 1033 E FP Sbjct: 1004 VENFEGSIEIVVFP 1017 >gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040] gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040] Length = 1166 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 497/1057 (47%), Positives = 690/1057 (65%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGA+ L + D A+Q PAIAITDTN++F+ALEFS Sbjct: 1 MTAHPRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ + ++ G+ P P +VLL GY+ L+ L S +Y+ + Sbjct: 61 AGIQPIIGCQVDLT----FEKSDPGEKPKFPAP-VVLLAQDETGYEHLMRLSSCLYVDNG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L E GLI LTGG GPI + AE + K +F DRLYV Sbjct: 116 G-QLPQVSLEEL-EANAGGLICLTGGPEGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYV 173 Query: 185 NLQRHRGYDRYRESQVV------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D E++ + ++AY +LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E +ELR +A GL+ RLA I + Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVDELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+W K+ IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R E +P VDRLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583 Query: 597 DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + +LIP DD TY+L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P +N F V D + Y+L A+K VG I+ A DKPF +L DF RVD K++ Sbjct: 824 APDINRSLATFDVVDGELVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +SL+ + +Y+ +++ + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDVLDPNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 + + R E + +GFY +GHPLD Y P L++ + +E +A Sbjct: 943 PRMAGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039 >gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 1160 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + + ++ K AA PA+AITD NL ++F A Sbjct: 1 MAE-PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + +L + GYQ L L+S Y Sbjct: 60 AGIKPIIGADFFV----------QSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+G G + + + E+ L +++ F DR Y+ Sbjct: 110 GAAGPVIDRDWLIE-HNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F S +D++AH++ +A+ + + Sbjct: 169 ELIRTGRADEESYLHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDA 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ EM +F+DLPEAL N+VEIARRC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADLPEALANSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L A GLE RLA A + Y +RL EL VI +M F GYFLI Sbjct: 284 GEMSTEDYLVKCAREGLEERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVAETYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLEKAFVA-EPQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R + L Sbjct: 523 TDFAPLYCDGEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F +GA G+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGQYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA D F L D C+R D KKLNRRVLE L Sbjct: 823 FHVNPEGEIVYGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL + K A K ++F + + + + + Sbjct: 883 IMSGAFDRLGPHRAALMNSLCDALKAADQHAKAEAIGQGDMFGVLAEEPAAVEASYSTVA 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V + E+ LG Y +GHP+ Y + + G ++ T RG + +V+S Sbjct: 943 PWPEQVVLDGERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVGLVLS 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + + F Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLDVMLF 1031 >gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus parainfluenzae ATCC 33392] gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus parainfluenzae ATCC 33392] Length = 1159 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 415/1048 (39%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++G + ++ AAD A+A+TD N + F + + Sbjct: 1 MSAKPRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG + + + + ++ LL EGY+ + L+S+ Y Sbjct: 61 SGIKPIIGADVHV----------KSDLCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EG+I+L+GG+ G I + +S AE + +++ F D Y+ Sbjct: 111 V-DLPYIDREWLIE-HREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R D R ++LA H+LPLVATN+ +FL+ +D+EAH++ +A+ + Sbjct: 169 SLSRTGRPDEERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R T Y ++ EM +F+D+P ALENTV IA+RC+ L++ + + Sbjct: 229 KRPKRYTEQQYFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE RLA + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GELSTEDYLVMKAKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 404 VDFCMDGRDRVIDHVADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLD-KAFEAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLAREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 PVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ K + K+ ++F T + + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFGVLTETHEEVENAYAHTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG A ++VS Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTAAGLLVST 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+RIG T + + + F Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030 >gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1] Length = 1159 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 605/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++G + + ++ AA+ A+A+TD N + F + + Sbjct: 1 MSTQPRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PIIG + + + + + ++ LL EGY+ + L+S+ Y Sbjct: 61 SGIKPIIGADVHV----------KSELCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EG+I+L+GG+ G I + +S AE + +++ F D Y+ Sbjct: 111 V-DLPYIDQEWLIE-HREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R D R ++LA H+LPLVATN+ +FL+ +D+EAH++ +A+ + Sbjct: 169 SLSRTGRPDEERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R T Y ++ EM +FSD+P ALENTV IA+RC+ L++ + + Sbjct: 229 KRPKRYTEQQYFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGE-----YFLPKFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDYLVMKSKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 404 VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R + Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLTREGKP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 LVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V +N I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ K + K+ ++F T + + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEEVENAYAHTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++VS Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTVAGLLVST 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+RIG T + + + F Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030 >gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45] Length = 1177 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 510/1066 (47%), Positives = 685/1066 (64%), Gaps = 57/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ L + A + PA+A+TDTNNLFSALEFS A Sbjct: 4 MAD-PRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASG 62 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P P +VLL GY+ L++L SR+Y+ Sbjct: 63 AGVQPIIGCQVDL----RYLNPAPGERPKPPAP-VVLLAQNERGYENLMKLNSRLYMRHD 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L E ++GLI L+GG GP+ R N A+ L ++FGDRLYV Sbjct: 118 G-EFPHVLLDEL-ETLSDGLICLSGGPDGPVGRLLRENHRAAAQVLLTRLHQIFGDRLYV 175 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY LPLVATN+ F YEAHD ++ +A Sbjct: 176 ELQRHPGEDGLPEAERLSERGHVEMAYEMGLPLVATNDVYFPKPAMYEAHDAMICIAEGA 235 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R R+TP HYLK EMV++F+DLPEA+ENTVEIARRC+F+ + Sbjct: 236 YVDQQQPRRRLTPQHYLKTPQEMVTLFADLPEAIENTVEIARRCAFMAY--------RRD 287 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I + Y++RLDFEL +I M F GYF Sbjct: 288 PILPKFADDEVAELRRMANEGLQRRLA--VIPHAVTVEQYQERLDFELGIIEGMGFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 346 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYGH++VAQIITFG+L +K A+RDVGR LQMPY QVDRL K Sbjct: 406 FDIDFCMDRREEVIRYVQEKYGHDKVAQIITFGALLSKMAVRDVGRVLQMPYGQVDRLSK 465 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R RE + VDRLL Q++EGL R A THAAG+VI D Sbjct: 466 MIPVEGVKPVSIEKALQDEPRLREEARNEEVVDRLLTYGQQIEGLLRSAGTHAAGVVIAD 525 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RP +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + Sbjct: 526 RPTDELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKGGRPI 585 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + ++LIP DD TY L T+ +FQ+ESSGM AL+ M+P Sbjct: 586 HVAADGTQLYEPAEGGENQMNLIPLDDERTYRLYADAKTVAVFQVESSGMMDALKRMKPT 645 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG +I S+HP ID +L ETQG+I+YQEQVMQI Sbjct: 646 CIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQI 705 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 706 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKATEVFDLLEKFAN 765 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + +A++ + + Sbjct: 766 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLATYFYEAKKGLKLDYV 825 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868 PP VN F V ++ Y+L A+K VG R ++E DKPF ++ DF Sbjct: 826 PPCVNRSQATFDVDKGKLVYALGALKNVGLEAMRLVVEGRRSVPEDPKSPDKPFVNVFDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RVD K++ +R LE L AG D +R ++ +SLD + Y+ V + + + ++F Sbjct: 886 ARRVDLKRVGKRPLEMLARAGCFDQLDRNRRRIFESLDALVAYSAAVHEQKHSAQVSLFG 945 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E G + L + R E + +GFY SGHPLD Y P L++ + +++ Sbjct: 946 -EAGDDLPEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMLLDDAEN 1004 Query: 989 TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 RG ++LA +V +Q++K+ KG+R + S+P+ YE F Sbjct: 1005 KARGGTCLVKLAGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1050 >gi|86159864|ref|YP_466649.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776375|gb|ABC83212.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 1210 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 398/1083 (36%), Positives = 607/1083 (56%), Gaps = 70/1083 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A ++A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + ++LL AEG+ L L S+ + + Sbjct: 62 PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 RI L++ ++GL+ LT +G + R A + ++ +F ++ +Q Sbjct: 116 PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ +++ QL +PLV T ++ ++S ++ +AH+VLM +A + R Sbjct: 175 SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T ++ EM + D EAL+NT+ IA C+ L + LP F E Sbjct: 235 RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E++ + A GL+ R + + YRQRL+ EL VI +M F GYFLIV DFI Sbjct: 291 SEDDYIVKLAREGLDRRFREIDGKYPHDRDLYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+ Sbjct: 351 WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+ Sbjct: 411 RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470 Query: 486 PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522 + + R +E + + ++ + LEGL Sbjct: 471 KTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+VI D+PL + VP Y+D +S++ V+QF + +E AGL+KFDFLGLKTLT++ Sbjct: 531 RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590 Query: 583 QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + + ++ IP DD Y L++ T G+FQ+ESSG + + M+P Sbjct: 591 DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650 Query: 640 IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ED+IA +LYRPGP+D + VY +RK+G+EK+ HP ++ +L+ T GVI+Y Sbjct: 651 FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA NG+ +A IF+ Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDDKVAGGIFD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ +AR Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 812 FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861 ++++PP VN F RI + L A++GVG + + I+EA A P Sbjct: 831 SQLEVLPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGP 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F SL D RVDSKK+N++VLE+LV +GALD G R QL +D + +R + Sbjct: 891 FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAIAAGASAQADRAS 950 Query: 922 KHENIFAH--EKGTFSDKITLE---------KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 ++F K VR E+ LGFY +GHPL Sbjct: 951 GQASLFGALTPSAATEAKPRYPRPGDAVGEVNVEEWPERVRLAFEKEALGFYLTGHPLMG 1010 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029 Y+ +R+ G+ + + +V S +++ + KG+R G++T + E Sbjct: 1011 YEREVRRYASSTCAAVAHKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070 Query: 1030 NFF 1032 + Sbjct: 1071 ICW 1073 >gi|224531850|ref|ZP_03672482.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116] gi|224511315|gb|EEF81721.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116] Length = 1161 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 388/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH ++ ++V+ + +PL A N+S ++++ED A D+++ + S Sbjct: 190 LELQRHGIKEQNIVNERLVEYSRELGVPLTAANDSHYVNKEDAVAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + + GL+ + R +EL+VI M F GYFLIV Sbjct: 310 FN---TLGEYLEHLTLDGLK-------FRYKTLTNKIKDRAFYELSVIIGMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DSP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G ++I HP + +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYISFEDFVRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F + + + F + S E+ Sbjct: 898 TLFENLDQLIEVVSEDKNNKKLGQNSLFDALENQDSIQQSFNYQVFKEYSYSELLGFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + +A + + ++ A ++ + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAINSFSSLNVLSDLAIKKDSIVQFAGILNLVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111] gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111] Length = 1143 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 417/1034 (40%), Positives = 618/1034 (59%), Gaps = 33/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D++ L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 230 YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI WA Sbjct: 286 EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + R Sbjct: 346 KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + + Sbjct: 406 DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V L++++ KLEGL R+A HA G+VI L+ VP+Y Sbjct: 466 E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSLIP 602 + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + + + + IP Sbjct: 525 EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKCKIQNETELDIGTIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 585 LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMGKK Sbjct: 645 FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K Sbjct: 705 KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y L Sbjct: 765 AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG SR Sbjct: 825 GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +SL + A+ ++ ++F E + + N S R E+ Sbjct: 885 ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL ++ +G + N++ +A M++ + TR G R+ + Sbjct: 943 LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001 Query: 1019 TFSEPAKEYEANFF 1032 + + + + F Sbjct: 1002 SLEDQTGKIDVTLF 1015 >gi|88808431|ref|ZP_01123941.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805] gi|88787419|gb|EAR18576.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805] Length = 1173 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 382/1051 (36%), Positives = 580/1051 (55%), Gaps = 35/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I +A VA ++++FG+ Y+ Sbjct: 118 FSRACIDKHLLKQY-SEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGEDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + +VATN++ +L+ D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNVEIVKIAQELGIQVVATNDAHYLTRHDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T YLK+ EM +F+D P ++ + + ++ + + + + Sbjct: 237 RLRYTGTEYLKSEEEMGRLFADHLDPAVVQEAIANTVSVAEKVEDYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L GL RL G + + Y RL EL ++ +M F YFL+V D Sbjct: 297 EGHTPVTYLHEVTEQGLRDRL--GLSSNDTIEETYADRLAHELQIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + + F+E DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGDESPNPEFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ +AQ ++D Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +++ +K++++ + I++MPP VN DF D RI Sbjct: 774 TAYLKAHYPVAYMAALLSVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRDQRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ + AD PF+SL D C RV S +NRR LESL+ GA+D Sbjct: 834 LFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAMDAL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE----------K 942 +R QL+ LD + +A ++R + N+F G+ Sbjct: 894 EPEANRAQLIADLDLLLDWANSRARDRASGQGNLFDLMAGSADGDSDAPSDLSLAPKAAP 953 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + S + + E+ ++GFY S HPL P R + G + AMV Sbjct: 954 VKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLAGLEEQADKAKVSAIAMVS 1013 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 EMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|303228475|ref|ZP_07315306.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-134-V-Col7a] gi|302516833|gb|EFL58744.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-134-V-Col7a] Length = 1135 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 380/1033 (36%), Positives = 599/1033 (57%), Gaps = 31/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + +QPA+AITD N+++A+ F ++ A GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G + + ++ A + + + + FG D ++ +Q H Sbjct: 121 ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179 Query: 190 RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R QV+ QLA + L +VA+N+ ++ ++D +A D+ + + ++ DR + Sbjct: 180 GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P ALENTV+IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 E I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + DP+V L + QKLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 EKAL--KGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 SNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKVHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N+Q++ P VN F V + I + L IK Sbjct: 766 PEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQGDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ A+ + S+ DFC RVDSK +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ ++F D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFYI 944 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 +GHPL Y L+ G+ + + G I ++ + + T++G + + Sbjct: 945 TGHPLQGYNKELK--GLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRI 1002 Query: 1021 SEPAKEYEANFFP 1033 + + + FP Sbjct: 1003 EDYSGSAQVVAFP 1015 >gi|303231851|ref|ZP_07318562.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-049-V-Sch6] gi|302513458|gb|EFL55489.1| putative DNA polymerase III subunit alpha [Veillonella atypica ACS-049-V-Sch6] Length = 1135 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 381/1033 (36%), Positives = 600/1033 (58%), Gaps = 31/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + +QPA+AITD N+++A+ F ++ A GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G + + ++ A + + + + FG D ++ +Q H Sbjct: 121 ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179 Query: 190 RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R QV+ QLA + L +VA+N+ ++ ++D +A D+ + + ++ DR + Sbjct: 180 GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P ALENTV+IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 E I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + DP+V L + QKLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 EKAL--KGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 SNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N+Q++ P VN F V D+ I + L IK Sbjct: 766 PEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQDDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ A+ + S+ DFC RVDSK +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ ++F D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFYI 944 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 +GHPL Y L+ G+ + + G I ++ + + T++G + + Sbjct: 945 TGHPLQGYNKELK--GLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRI 1002 Query: 1021 SEPAKEYEANFFP 1033 + + + FP Sbjct: 1003 EDYSGSAQVVAFP 1015 >gi|203284485|ref|YP_002222225.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly] gi|201083928|gb|ACH93519.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly] Length = 1144 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 397/1034 (38%), Positives = 600/1034 (58%), Gaps = 22/1034 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VHS +SLL+GA + +I+ K IA+TD NLF A++F ++A Sbjct: 1 MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + + LK + ++LL +GY+ L++L S YL + Sbjct: 61 AGIKPIVGIEAYMS--NTLKHIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ L + +EGLI ++ G I + N A+ +L FK FGD Y+ Sbjct: 118 FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH + +++ + ++ L +N+S ++++ED A D+++ + S Sbjct: 177 ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301 R ++ T + YLK+ EM +F DLPEAL NT++IA +C+ F ++ PI P + E Sbjct: 237 GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D Q L + + GL+ R A + ++R +EL+ I M F YFLIV Sbjct: 297 DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDEVI+YV KYG ++VAQIITFG+L+ KA +DVGR L +P+ Q + + KLIP+ Sbjct: 407 FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + D +E P + L+E + LEG+ RHASTHAAGIVI L+ Sbjct: 467 GP--KVSLREVLKDKALKEYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + D TQ+ M +E GL+K DFLGLKTLTL++ + + ++ I Sbjct: 525 YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D +T+ +L+ + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 585 SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G ++I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 645 VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EM++ K FI GA + G +T+A +IFELL FA YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N EK+ + ++ + I ++ P +N DF+V + I Y L Sbjct: 765 NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I+ + + S EDF RVD K +N++ LE+ + +G D G +R Sbjct: 825 IKNIGELMVDLILNERQENGEYKSFEDFIKRVDEKVINKKFLEASIKSGLFDSLGQNRRT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+++LD + + + + ++FA + + F + E+ +LG Sbjct: 885 LIENLDKLIAFVLENKNAKKQGQNSLFA-SQNILEETFNYNLFEEYSYLELLGFEKELLG 943 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019 FY SGHPLD YK L + +A+ R ++ A + + +K + R+ + Sbjct: 944 FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003 Query: 1020 FSEPAKEYEANFFP 1033 E FP Sbjct: 1004 VENFEGSIEIVVFP 1017 >gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] Length = 1173 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 413/1065 (38%), Positives = 601/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDVGR Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A D PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088] gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088] Length = 1160 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 405/1047 (38%), Positives = 587/1047 (56%), Gaps = 41/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL++H+ YSL++G + + ++ K+A PA+A+TD N F ++ + A AG++P Sbjct: 3 DFVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G I G + LLV++ EGY L L+S+ Y Q Sbjct: 63 IFGADFLIS----------GLAETDRALPLTLLVTSLEGYANLTRLISKAYQEGQRLGVP 112 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL E GLI L+GG G + + N +A + + LF R Y+ +QR Sbjct: 113 YIEYEWLTEF-QGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRT 171 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + + V+LA + P+VATN+ FL +++EAH+ + + + RPR Sbjct: 172 GRDNEEPYIHEAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRN 231 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YL++ EM +F DLPEAL NTVEIA+RC+ IL + P LP + E Sbjct: 232 YTDQQYLRSPQEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGM----TM 287 Query: 308 ENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + R + GL R + + QDY RL+ EL++I +M F GYFLIV DFI Sbjct: 288 DQYFRQLSHEGLAQRIGGQGERIPDPRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK+++IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 RWAKEHDIPVGPGRGSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCM 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRRDEVI YV YG + V+QIITFG++ AKA +RDV R Y D+L KLIP + Sbjct: 408 DRRDEVIDYVATHYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG 467 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A+ + R+ D + +++ +LEG+ R+ HA G+VI L P Sbjct: 468 MTL-AKAVEQEEALRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSP 526 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLS 599 +Y D VTQ++ +E AGL+KFDFLGL+TLT++ ++ + R V D++ Sbjct: 527 LYCDETGGGLVTQYDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDIN 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD+ + LL T +FQLES GM+ ++ ++PD EDIIALV+L+RPGP+ + + Sbjct: 587 QIPLDDNAVFQLLQQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGM 646 Query: 660 V-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V + H + P+L T G+I+YQEQVMQIAQ+L+GY+L AD+ Sbjct: 647 VDNFINRKHGREAIAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADM 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM KQ+E F SGA++ GI +A+ IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 707 LRRAMGKKKPEEMAKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALV 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K HYP EF+AA M+ E+ N +KI F ++ R + + P VN F V D Sbjct: 767 SYQTAWLKVHYPAEFMAAVMSSELQNTDKIVIFIEECRAMGLPLKLPDVNEGRYAFTVND 826 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L AIKG+G I+ A+ PF L DFC+R D + LN+R +E+LV AGA Sbjct: 827 LGEIVYGLGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSV 945 D R L+ ++D+ K A+ N + +++F + Sbjct: 887 FDSLSEPRWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARP 946 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E+ LG Y +GHP+D Y+ +R+ + A + + R+ ++V+ + Sbjct: 947 WSGRERLSGEKDTLGLYVTGHPIDDYEREIRQFVPTKIADLRADGKSSQ-RIVGLIVAVR 1005 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KT++G + VT + + EA + Sbjct: 1006 TMKTKRGDTMAIVTLDDRSARIEATVY 1032 >gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32] gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32] Length = 1157 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 419/1047 (40%), Positives = 601/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G I +A ++ E ++ F +R ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVVLAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RLA A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K + ++F D K + + Sbjct: 883 CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|161830648|ref|YP_001597182.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331] gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331] Length = 1143 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D++ L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 230 YSDQQYFKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI WA Sbjct: 286 EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + R Sbjct: 346 KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + + Sbjct: 406 DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V L++++ KLEGL R+A HA G+VI L+ VP+Y Sbjct: 466 E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602 + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + Q ++D+ IP Sbjct: 525 EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 585 LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMGKK Sbjct: 645 FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K Sbjct: 705 KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y L Sbjct: 765 AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824 Query: 840 AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG SR Sbjct: 825 GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +SL + A+ ++ ++F E + + N S R E+ Sbjct: 885 ASLFESLTKALQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL ++ +G + N++ +A M++ + TR G R+ + Sbjct: 943 LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001 Query: 1019 TFSEPAKEYEANFF 1032 + + + + F Sbjct: 1002 SLEDQTGKIDVTLF 1015 >gi|303235030|ref|ZP_07321654.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4] gi|302493885|gb|EFL53667.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4] Length = 1161 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 368/1050 (35%), Positives = 584/1050 (55%), Gaps = 44/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ + AIAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ + K +VLL +GY L+++VS Y ++ Sbjct: 64 IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQKGYSNLMKIVSLGY-VEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + Q+A ++ LV TN+ ++ +EDY+ H++L+ + + + ++ Sbjct: 178 SSREDMVVMENIPQIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L++ +M +F + PEA+ENT +IA C+ L+ LP F E Sbjct: 238 IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ GLE R A Q+ ++R ++EL+VI +M + YFLIV DFI++A Sbjct: 294 SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN + Sbjct: 409 EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + VP+ Sbjct: 469 D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V+ + +D Sbjct: 526 AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y + K+ Sbjct: 586 KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK + M+ Sbjct: 646 NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705 Query: 727 K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 I GA + G+ + +A I++L+ FA Y FNKSH+AAY++++ Sbjct: 706 DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TAW+K +YPVEFLAA ++ M N +I + ++AR+ +I+I P +N F V DN Sbjct: 766 RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIKIEEPDINYSLDKFDVKDNS 825 Query: 835 IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I Y L AIK VGT I+ + + F S DF R+ D +N+R +ESL+ AGA Sbjct: 826 IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 G +R L+ +I Q KN N+F E +D+ + + S Sbjct: 886 FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNDENDRDDFTRREEFDKS 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003 E+ VLG Y S HPL Y I+ + + G +++ ++ S Sbjct: 946 ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+ + +V F + E FP Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4] gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4] Length = 1158 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 432/1037 (41%), Positives = 613/1037 (59%), Gaps = 30/1037 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ YS+++G + + ++ PA+A+TD NN+F+ ++F + A A G++P Sbjct: 4 SFVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + T + LL GY L L+SR Y Q Sbjct: 64 IIGADVFLVDS----------TESSRASRVTLLCQNEGGYCNLSRLLSRAYSEGQYHGVP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ +WL + ++GLI+L+GG G + +A ++ A+K L ++ LF R Y+ L R Sbjct: 114 RLQWNWL-QSQSDGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRT 172 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + V LA + P+VATN+ FL +D+EAH+ + + + RPR Sbjct: 173 GREGEEDYLHGAVALALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPRH 232 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL+ SEM +F+DLPEALENTVEIARRC+ L + + LP F E I+ Sbjct: 233 YSEQQYLRTSSEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSIEAFL 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E E R L + Y RL EL VI +M F GYFLIVADFI+WA Sbjct: 293 EVEARRGLEQRLAKLYPSETDREIKQP-TYETRLAEELAVINQMGFPGYFLIVADFIRWA 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 KKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC +RR Sbjct: 352 KKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCMERR 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV + YG + V+QIIT+GS+ AKA +RDVGR L PY VD++ KLIP D + Sbjct: 412 DRVIEYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKMTL 471 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + R + V L+++++KLEGL R+A HA G+VI + L++ VP Y Sbjct: 472 D-KALEESEGLRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYVPYYC 530 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIP 602 + + VTQF+ IE GL+KFDFLGL+TLT++ +L + Q+ + DL+L+P Sbjct: 531 EQGASGVVTQFDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDLALLP 590 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660 +D E+Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + + Sbjct: 591 MNDPESYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDD 650 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y NRK+G+ K+ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK Sbjct: 651 YINRKHGRAKVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 710 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F GA G+ + A IF+L+ KFA+YGFNKSH+AAYA+I+YQTA++K Sbjct: 711 KPEEMAKQRAIFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQTAYLK 770 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839 HYP ++AA ++ +MDN EK+ F Q+ + N++++PP VN F G N I Y L Sbjct: 771 AHYPAPYMAAVLSSDMDNTEKVAAFIQECQVMNLEVLPPDVNVSDYRFSAQGKNAIRYGL 830 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG I++ P+ L +FC R+D +K+NRRVLE+L +GALD G +R Sbjct: 831 GAIKGVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPLGANR 890 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQR 957 L SL+ A+ +N + ++F + S + + R E+ Sbjct: 891 ATLEASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLALEKE 950 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKG 1012 LG Y SGHP+D Y+ LR++ + E V+ + +A ++ S + K R+G Sbjct: 951 TLGLYLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRTSKARQG 1010 Query: 1013 SRIGWVTFSEPAKEYEA 1029 R +VT + + E Sbjct: 1011 GRNAFVTLDDRSARLEV 1027 >gi|312796952|ref|YP_004029874.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454] gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 1198 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 409/1044 (39%), Positives = 608/1044 (58%), Gaps = 37/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++ +++ A D Q A+A+TD N F + F + A A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+G + + D+ ++LLV GY L EL+SR +L +Q Sbjct: 60 HGVKPIVGADVWVSNPDDRDKPA----------RLLLLVKDRRGYLNLCELLSRAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + WL+ EGL+ L+G G I A + Q A + + +F + Y+ Sbjct: 110 YRGRAEVDCQWLETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R Q V+LA +LP+VAT+ F++ ED+ AH+ + ++ +++ Sbjct: 170 ELQRMRQPGVEAYVQQAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANP 229 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + D Y + +M +F+D+P AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRAKRFSTDQYFFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q + Q Y++RL FE + I +M F GYFLI Sbjct: 290 L----DDYLVQLSKTGLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ A+AL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y+ D + KLI Sbjct: 406 IDFCQDGRDRVIQYVKSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPGP+ Sbjct: 586 WSLAQVPLDDPASFTILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREMVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S A IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHRELFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+M+L MD+ +K+K +D ++ ++PP +N F+ + Sbjct: 766 TAWLKVHHPAEFMAANMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAP 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +PF L DFC RVD + +NRR +E+L+ A Sbjct: 826 GKRSKTIRYGLGAIKGSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G+ + L Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQASANAL--QGGLFDMPDGSSGHQHELVDEPAWTE 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + E+ LGFY SGH D YK +R+ + E +A ++ + + + Sbjct: 944 KRKLQEEKAALGFYISGHLFDAYKDEVRRFVRQKIGELKEGRDK---VIAGVITAMRTQM 1000 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1001 TQRGK-MLVAVLDDGTGQCEVTVF 1023 >gi|14194702|sp|Q9XDH6|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens] Length = 1173 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 418/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LLV A+GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I W+ E EGLIML+ G I A + AE + +F DR Y+ Sbjct: 109 RNGMVIIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D + V LA PLVATN+ F+ +ED+ AH+ + + + Sbjct: 168 EIQRTNRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + YLK+ EM +FSDLP+A+ENTVEIA+RC+ +++ LP + + Sbjct: 228 RRSKNYSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV RA + DRL K Sbjct: 404 FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 ++P + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MVPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++ DC+ED+IALV+L+RP Sbjct: 583 EPPLDIAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + + + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + R + H ++F Sbjct: 883 LIRSGALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEEDADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619] gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619] Length = 1174 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 408/1060 (38%), Positives = 591/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + +A PA+AITD +N+ + ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I L +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A + AE L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR+ Sbjct: 174 RVGDEEYVHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRPRMY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ + GLE + Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV + YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + V++ Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKFTVN 828 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA PF L DFC RVD K++N+R L++L+ +G Sbjct: 829 DDGRIIYGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALIRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932 ALD G +R LL +L+ K A+ + + H ++F + Sbjct: 889 ALDRLGPHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEE 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 DSDVYANHRKVRELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1] gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1] Length = 1157 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 418/1047 (39%), Positives = 600/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G I +A ++ E ++ F +R ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RLA A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K + ++F D K + Sbjct: 883 CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECIP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR] Length = 1158 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 413/1048 (39%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P+FVHL+VHS +S+++G + I + +A PA+AITD N + + KA Sbjct: 1 MT-APNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQ 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++P+IGC + Q P + + L EGYQ++ +L+S+ YL Sbjct: 60 LGLKPLIGCDFWV----------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGN 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K I WL+E EG+I+L+G G + +A + L +++ F DR Y+ Sbjct: 110 IKGKPVIDKDWLKE-HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + + V LA LP+VATN +FL EED++AH++ +A+ + K Sbjct: 169 ELVRTGRPQEENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDK 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +FSD+PEA+ENTVEIA+RC+ +++ + Sbjct: 229 RRPKKYSPQQYLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPKFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E L + GLE RL A + +Y +RL EL VI M F GYFLI Sbjct: 284 GDLTTEEFLIKVSEEGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V + YG E V+QIITFG++ AKAA+RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + A D V ++++++ LEG+ R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFEIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++Q ++D + +R Sbjct: 523 TDFSPLYCDDEGNNPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ I D + LL T +FQLES GM++ ++ + PD EDIIALV+L+RPGP Sbjct: 583 PIDITSIDLTDPACFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+E F GA++N I +A IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYK 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + R+ Y + AIKGVG I++A PF L DFC RVD K++N+R+L+ L Sbjct: 823 FTVDEQQRVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + AGA+D G R L+ +L+ + A+ ++F + + Sbjct: 883 IRAGAMDNLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVR 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + +V E E+ LG Y +GHP++ ++ L+ T + +I +A +V+ Sbjct: 943 KWSEAVWLEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++G R VT + + F Sbjct: 1003 RVLTNKRGQRFAIVTLDDKTARMDVRLF 1030 >gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [marine bacterium HP15] Length = 1145 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 400/1034 (38%), Positives = 593/1034 (57%), Gaps = 41/1034 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + + ++ ++A PA+ +T+ +N+ S + F + A AG++PIIG L ++ D Sbjct: 1 MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + I LL +GY L E++S Y Q I WL+ Sbjct: 61 EPE----------NPFRITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWLEARPN 110 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQV 200 GLI L+G G + +A ++A +R + L+ D Y+ LQR D Sbjct: 111 -GLIALSGSRMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLS 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSE 259 V+LA LP+VATN+ FL ED+EAH+ + + S + R R + YL++ E Sbjct: 170 VELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M+ +FSD+PEA+ENTVEIARRCS +++ LP + + ++ R + GL Sbjct: 230 MIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGM----TMDDYFRKVSEEGL 285 Query: 320 EVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 E RLA+ + Y +RL+FEL++I +M F GYFLIV DFI+WAK N +PVG Sbjct: 286 EERLAKTLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG 345 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + RD VI Y Sbjct: 346 PGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYTA 405 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 KYG E V+QIITFG++ AKA +RDV R Y D+L K+IP +P + +A+ + Sbjct: 406 QKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPGMTLE-KALEQE 464 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 + E D + E++ KLEG+ R+A HA G+VI ++ P+Y D V Sbjct: 465 PQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSLV 524 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYH 610 TQF+ +E AGL+KFDFLGL+TLT+++ +L+ + R +D++ IP DD ++ Sbjct: 525 TQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSFD 584 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNN 663 +L T +FQLES GM+ + +QPD +ED+IALV+L+RPGP+ + +V + Sbjct: 585 MLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHGR 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 + + + P+L+ T GVI+YQEQVMQIAQ+++GY+L AD+LRRAMGKK E Sbjct: 645 QPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKPE 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM KQK+ F+ G +NGI+ T+A NIF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY Sbjct: 705 EMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P EF+AA +T +M N +K+ ++ R + ++ P V+ F V D +I Y L AI Sbjct: 765 PAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDEGQIVYGLGAI 824 Query: 843 KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KG+G + I+E D PF + DFC RVD KK+N+R +E+L+ +GA+D G SR QL Sbjct: 825 KGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQL 884 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRV 958 + S+D + A +N + ++F E + R + E+ Sbjct: 885 MASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKDT 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y +GHP D Y+ +R+ + + R+A +VV+++ KTR GS + ++ Sbjct: 945 LGLYLTGHPFDEYEKEVRRFVRSSIADLK--PNKSPQRVAGLVVAQRTMKTRTGSTMCFI 1002 Query: 1019 TFSEPAKEYEANFF 1032 T + + EA F Sbjct: 1003 TLDDRSARIEATLF 1016 >gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1173 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 G + + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GLLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTNKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|227494658|ref|ZP_03924974.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831840|gb|EEH64223.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 1176 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 356/1066 (33%), Positives = 573/1066 (53%), Gaps = 48/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL H+ YS+L+GA + ++ + A +QPA+AITD LF A EF +A Sbjct: 1 MAVTDPFVHLHNHTEYSMLDGASKIAPMVKEAARLEQPALAITDHGYLFGAYEFYSEARK 60 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 AGI+PIIG + + + + + LL T EG L Sbjct: 61 AGIKPIIGLEAYVTPGTSRFDRTRVRWGEEWQASDDVSARGAYTHLTLLAETTEGMHNLF 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S L Q + R + L++ ++GLI TG S + A + Sbjct: 121 RLGSMASLDGQWGKWPRADMELLEQY-SKGLIAFTGCPSSEVQTRMRLGQWDKAVEAAGR 179 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG + ++V H ++ + +++L+ +P+V TN++ +++ +D + D L Sbjct: 180 LQDVFGKENVFVEFMDHGIDIEKRTRADLIKLSNQLNIPMVVTNDAHYVTADDRDIQDAL 239 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + DR + +Y+++ M + D+P+A +NT+ IA RC+ Sbjct: 240 LCINSGVTLDTPDRFKFDGSGYYIRSSESMRRDWEDIPQACDNTLLIAERCNVEFTEGVS 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 +PRF E +D E + + GL +R QG + R++ D+E+ +I + Sbjct: 300 YMPRFPVPEGED----ETSWFIKEVERGLHIRFPQG------IPDNVRKQADYEVGIINQ 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFL+V+DFI+WAKK I VGPGRGSGAGS+ AYA+ ITD++PL LLFERFLNP Sbjct: 350 MKFPGYFLVVSDFIRWAKKQGIRVGPGRGSGAGSMVAYAMQITDLNPLDHGLLFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DF + RR EVI YV KYG +RVAQ++T+G ++AK AL+D R L PY+ Sbjct: 410 ERVSMPDFDVDFDERRRGEVIEYVTRKYGDDRVAQVVTYGKIKAKQALKDSCRVLGRPYA 469 Query: 471 QVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 ++L K +P + + + + FR +P ++++++ LEGL Sbjct: 470 LGEQLTKAMPPSVMGKDIPVSGIFDKEHKRYEEAAEFRRYYNENPETHPIVDMAKGLEGL 529 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA +++ PL Q++P+ + + +TQF+ E GL+K DFLGL+ LT+ Sbjct: 530 TRQWGVHACAVIMSSVPLQQVIPLMQRPQDGATITQFDYPTCESLGLLKMDFLGLRNLTV 589 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + + + D+ + +D +TY LL+ TLG+FQL+ GM++ L+ M PD Sbjct: 590 ISDALDNIERNGKERPDIDHVELNDPKTYQLLSAGETLGVFQLDGDGMQKLLKRMAPDNF 649 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 EDI A+ +LYRPGP+ D+ Y +RKNG+ +I IHP + LK T G+I+YQEQ Sbjct: 650 EDISAVGALYRPGPMGADSHNKYADRKNGRAEIEPIHPELAEPLKEILGTTYGLIVYQEQ 709 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++GYSL +AD+LRRAMGKK KE +DK+ F +G + G S+ ++E+L Sbjct: 710 VMAIAQKVAGYSLGQADLLRRAMGKKKKEILDKEYVPFHAGMIERGYSEDCIKTLWEILV 769 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F++Y FNKSH+AAY ++SY TAW+K +YPVE++A+ +T + DN +K+ + + R+ I Sbjct: 770 PFSNYAFNKSHSAAYGLVSYMTAWLKANYPVEYMASLLTSQKDNKDKLALYLSECRRMGI 829 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN +F N I + LAAI+ VG I+EA + +DS F +V Sbjct: 830 TVLPPDVNVSEANFTAVGNDIRFGLAAIRNVGINVVEGIVEARKEKGKYDSFASFLDKVP 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N+R +ESL+ +GA D R L+ + + A +++N ++F + Sbjct: 890 VAVCNKRTIESLIKSGAFDSVADCRRALVAVHEEAVESAVKLKRNEAAGQFDLFGAMFDS 949 Query: 934 FSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987 + + + + +E+ +LG Y S HPL + L + + + + Sbjct: 950 AEVQMMTVDVPNMPDWPKHEKLSHERDMLGLYVSDHPLSGIQKALERYQDEQIAQILTSE 1009 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++A ++ + K TRKG T + + + FFP Sbjct: 1010 TSRDRQMVKVAGLITAVTIKTTRKGELWAIATLEDLSGSIDLLFFP 1055 >gi|317969748|ref|ZP_07971138.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0205] Length = 1179 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 384/1055 (36%), Positives = 579/1055 (54%), Gaps = 38/1055 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PAIA+TD ++ A+E + + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPAIALTDHGVMYGAIELLKLCRGSSVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + K +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPNPPKK---ERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L E +EGLI+ T G I +A VA ++ +FGD Y+ Sbjct: 119 FSRACIDKPTL-ERHSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQGVFGDDFYLE 177 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++ +++ +PLVATN++ +L+ D EAHD L+ V +V+ + Sbjct: 178 IQDHGSPEDRIVNVEMAKISKELGIPLVATNDAHYLTSNDAEAHDALLCVLTGKLVTDEK 237 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T ++K+ EM+ +F+D PE + V + ++ + + + + Sbjct: 238 RLRYTGTEFIKSEQEMLGLFADHLEPEVVAEAVANTALVAEKVEDYDILGRYQMPRFPIP 297 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR GL RL G Y +RL FEL V+ +M F YFL+V D Sbjct: 298 EGHTPVSYLREVTEQGLRARL--GLPEGSGFEATYGERLAFELQVMEQMGFPTYFLVVWD 355 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 356 YIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 415 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 416 CIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + + FRE L DP+V R ++++ ++EG + HAAG+VI P Sbjct: 476 RGKPAKLKEMIGEESPAPEFREKYLGDPAVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L ++VP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K++D + Q V +D Sbjct: 536 LDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTVDLVKQSSGVSID 594 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 595 PDALPLDDEGTFGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 654 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 655 GLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 714 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K ++ F+ GAS+ G+ IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 715 AMGKKKVSEMQKHRDIFVKGASERGVDAKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 774 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ + +K++++ + I++MPP VN +DF +RI Sbjct: 775 TAYLKAHYPVAYMAALLTVNAGSTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPVGDRI 834 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++EA +D PF SL D C R+ LNRR LE+L+ GA+D Sbjct: 835 LFGLSAVRNLGEGAIRALLEARSSDGPFQSLADLCDRIPGTTLNRRSLEALIHCGAMDAL 894 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------------HEKGTFSDKI 938 +R QL+ LD I +A ++R + N+F S Sbjct: 895 EPEANRAQLMADLDLIVDWASSRARDRASGQGNLFDLFAAPASGDAEETQGGGSDLSTAP 954 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + + E+ ++GFY S HPL ++ + G + + Sbjct: 955 KAAPVKDYPPTEKLRLEKELVGFYLSDHPLKQLTRPVQLLSPVGLGGLEEQADKARVSVV 1014 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 MV + TRKG R+ + + + EA FP Sbjct: 1015 GMVSGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1049 >gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B] Length = 1166 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 496/1057 (46%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+ H+ YSLLEGA+ L + D +++Q PAIA+TDTN++F+ALEFS Sbjct: 1 MTASPRFIHLRTHTEYSLLEGAVRLKKLPDLCSSNQMPAIAVTDTNSMFAALEFSVTLSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ + ++ G+ P P +VLL GY+ L+ L S +Y+ + Sbjct: 61 AGIQPIIGCQVDLT----FEKSDPGEKPKFPAP-VVLLAQNEAGYEHLMRLSSCLYVNNG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L E + GLI LTGG GPI + AE + K++F DRLYV Sbjct: 116 G-QLPQVSLEEL-EANSAGLICLTGGPEGPIGKLLQQGQRPAAEALMQRLKEMFPDRLYV 173 Query: 185 NLQRHRGYDRYRESQVV------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D E++ + ++AY +LPLVATN+ F E YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E +ELR +A GL+ RLA I + Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVDELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+W K+ IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R E +P VDRLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583 Query: 597 DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + +LIP DD TY+L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLRKITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ + ++ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLQLPYA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P +N F V D + Y+L A+K VG I+ A D+PF +L DF RVD K++ Sbjct: 824 APDINRSLATFDVVDGELIYALGALKNVGVDAMNLIVTARGDQPFVTLYDFARRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +SL+ + +Y+ +++ + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDVLDSNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 + + R E + +GFY +GHPLD Y P L++ + +E +A Sbjct: 943 PRMAGVPDWLPAERLSEEFKAVGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039 >gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154] gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154] Length = 1143 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D++ L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 230 YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI WA Sbjct: 286 EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + R Sbjct: 346 KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + + Sbjct: 406 DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V L++++ KLEGL R+A HA G+VI L+ VP+Y Sbjct: 466 E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602 + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + Q ++D+ IP Sbjct: 525 EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 585 LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMGKK Sbjct: 645 FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K Sbjct: 705 KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y L Sbjct: 765 AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG SR Sbjct: 825 GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +SL + A+ ++ ++F E + + N S R E+ Sbjct: 885 ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL ++ +G + N++ +A M++ + TR G R+ + Sbjct: 943 LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001 Query: 1019 TFSEPAKEYEANFF 1032 + + + + F Sbjct: 1002 SLEDQTGKIDVTLF 1015 >gi|170758690|ref|YP_001788703.1| DNA polymerase III DnaE [Clostridium botulinum A3 str. Loch Maree] gi|169405679|gb|ACA54090.1| DNA polymerase III, alpha subunit [Clostridium botulinum A3 str. Loch Maree] Length = 1185 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 371/1071 (34%), Positives = 593/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P ++ L H+ YSLL+ + + +++ K +IAITD ++ ++F ++A Sbjct: 8 EKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS+ ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + AE+ L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I + + +RL++EL++I Sbjct: 303 Y----EYLREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP+ + +A+ + +E + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPSVLNITID-KALELNPELKETYDDEERVKELIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI +PL VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IRENKGIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A N+F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIVAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F Sbjct: 896 KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------- 989 I + + + E+ + G YFSGHPL+ Y+ L+ + ++ Sbjct: 956 DIKYPNINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISKESLEGNL 1015 Query: 990 -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTVSSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK] gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK] Length = 1158 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 401/1048 (38%), Positives = 613/1048 (58%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL HS +S+++G ++ ++ K+A PA+A+TD NL ++F A Sbjct: 1 MAD-PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + ++ + + +L + +GYQ L L+S+ YL Sbjct: 60 AGMKPIIGADFKVHSEE----------LDNELADLTILAADNDGYQNLTMLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + ++GLI+L+G G + +A + + + + ++ F D Y+ Sbjct: 110 VQHQPVIDKEWLAQY-SKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYL 167 Query: 185 NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN+ F+S E ++AH++ +++ + Sbjct: 168 ELVRTGRPDEDAFIHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ + Sbjct: 228 NRPKLYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 283 GDLSTEDFLVVKSREGLERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL K+I Sbjct: 403 IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + +A AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 463 PAEPGMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 522 TDFSPLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++++ IP D +++ +L + +FQLES GM+ ++ +QPD ED+IALV+L+RPGP Sbjct: 582 PINIASIPMADKKSFDMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 641 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E++ H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 642 LQSGMVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADMLRRAMGKKKPEEMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT ++K HYP EF+AA MT +MDN +KI + + I ++PP VN Sbjct: 762 AYALVSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + A+KGVG +++EA F L DFC+R+D+KK+N+RVLE L Sbjct: 822 FNVDEQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G +R ++ +L++ K A + ++F + + Sbjct: 882 IKSGAMDRLGPNRATMMATLNDAIKAAGQHHQAEAFGQADMFGVLTAAPEEVEQAYANIP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 942 EWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAA 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1002 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029 >gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901] gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901] Length = 1171 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 401/1047 (38%), Positives = 581/1047 (55%), Gaps = 38/1047 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+V + +SL++ + + +L ++ A+ PA ITD +N F L+F + A +GI+PI Sbjct: 3 FVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G I ++ P I L GY+ + L+SR + Q Sbjct: 63 CGADFRI---------HKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPY 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I SWL E +EG+I L+G G I + N AE++L ++ DR Y+ LQR Sbjct: 114 IDESWL-EPHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTG 172 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 D + V LA + P+VATN+ FL + +E H+ + + + R R Sbjct: 173 RENDELHLHRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRY 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + Y ++ +EM +F+D+PEA+ENTVEIARRC+ + + LP + E + E Sbjct: 233 SDEQYFRSTAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFE 292 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 R LE L A + Y +RL FEL++I +M F GYFLIV DFIQWAK Sbjct: 293 KICREGLDLRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDFIQWAK 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC + RD Sbjct: 353 DHKIPVGPGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRD 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +VI YV + YG + V+QIITFG++ AKA +RDV R Y D+L K+IP D ++ Sbjct: 413 KVIGYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDVGMTLT 472 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A + RE D + +++ +LEG+ R+ HA G+VI L P+Y D Sbjct: 473 -KAYEQEEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCD 531 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPF 603 VTQF+ +E AGL+KFDFLGL+TLT++ ++ + Q+ +D+S IP Sbjct: 532 DTGGGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPL 591 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--- 660 DD T+ +L T +FQLES GM+ ++ +QPD +ED+IALV+L+RPGP+ + +V Sbjct: 592 DDPTTFDMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDF 651 Query: 661 ----YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRA Sbjct: 652 INRKHGRAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRA 711 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT Sbjct: 712 MGKKKPEEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835 AW+K HYP F+AA+M+ +MD +K+ F ++ R + ++PP VN F V ++ I Sbjct: 772 AWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVDEDANI 831 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L AIKG+G I+EA PF L DFC+RVD ++LN+R LE+LV +GALD G Sbjct: 832 IYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLG 891 Query: 896 Y------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK----FSV 945 R + ++ K A+ N ++F D+ ++ + Sbjct: 892 PGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDFHRVRR 951 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + R E+ LG Y +GHP+D Y L A +A +VV+ + Sbjct: 952 WSMKERLNGEKETLGLYLTGHPIDEYDKELSNFVSSRIFHLKAEKNKQ--TVAGLVVAFR 1009 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KT++G + +VT + E F Sbjct: 1010 VMKTKRGDNMAFVTLDDRTGRIEVAVF 1036 >gi|108803937|ref|YP_643874.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter xylanophilus DSM 9941] gi|108765180|gb|ABG04062.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter xylanophilus DSM 9941] Length = 1165 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 357/1052 (33%), Positives = 551/1052 (52%), Gaps = 41/1052 (3%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + F HL HS YS+L+GA + +++ + P IA+TD N++ A+ F Q+A Sbjct: 1 MAGTSGEFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEAT 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+P++GC++ + T + LL T EGY+ L++L + +L Sbjct: 61 KAGIKPVMGCEVYVT----EWGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHG 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R+ L+ G G+I L+G S + A + LL + ++F D +Y Sbjct: 117 -FYYKPRVDARTLRRHGR-GIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVY 173 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ R ++ +++L LPLVATN+S + + D HDVL+ + + Sbjct: 174 LEMQDHGLEEQRRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYND 233 Query: 243 KDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R R + + EM +F+D PEA +E ++ L + Sbjct: 234 PNRMRFHGEEFYVKPVEEMARLFADHPEA----LENTAGVVRSVEGPGIELGKTRLPNFP 289 Query: 302 -DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 LR GL R + + R+RLDFEL IARM F YFLIV Sbjct: 290 KPEGYTGSQYLRELCERGLRKRYGR-----RASDPEVRRRLDFELETIARMGFEDYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF+++AK I VGPGRGS AGS+ AYAL ITD+DPL++SLLFERFLNPDR+SMPD DI Sbjct: 345 WDFVKYAKDRGIAVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDI 404 Query: 421 DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DF R EV+RYV KYG HE VAQIITFG++ AKAA+RD R Q PY++ D+L KLI Sbjct: 405 DFSVAGRSEVMRYVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLI 464 Query: 480 PNDPAHPVSLQAIADDS---------------RFREARLADPSVDRLLEISQKLEGLYRH 524 P P + D + R+L+ + ++EG RH Sbjct: 465 PEKPVGTTLKDVLRRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARH 524 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 A THAAG+VI + PL+ +VP+ R + + V Q M +E GL+K DFLGL+ L +++ Sbjct: 525 AGTHAAGVVISEEPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIE 584 Query: 584 KSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++L + + ++++ IP DD ET L T G+FQ ESSGM++ L+ ++PD +D Sbjct: 585 ETLRIVRETTGERINIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDD 644 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 ++AL +LYRPGP+D I + K+ E + P + P+L+ T GV YQEQ+M+I+++L Sbjct: 645 LVALNALYRPGPMDYIPNFKKGKHDPESVRYPDPRLKPILEPTYGVAAYQEQLMEISKVL 704 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G++ EAD LR+A+GKK K+ + +++F+ G +NG+ +A ++E + K Y FN Sbjct: 705 GGFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFN 764 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+A Y+ +++QTA++K HYP ++AA ++ M+ +++ ++ +AR I+++PP VN Sbjct: 765 KSHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVN 824 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F V + I + L+A+K VG T I+ + + PF + DFC RVD N+R Sbjct: 825 ESGKRFTVVGDTIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRT 884 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LESL+ GA D G+SR +L + + + +F + + + Sbjct: 885 LESLIKCGAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAE-VAPPRPEVP 943 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + E E+ LG + S HPL LRK E G + +A + Sbjct: 944 ATPD-DPRRNLEWEKETLGLFVSDHPLRPVMHKLRKHVDLSLSELDGRQDGAVVCVAGLA 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 S + TRKG + + + E FP Sbjct: 1003 TSVRVSTTRKGETMAVLQLDDTRGMAEVLVFP 1034 >gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9] gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum SS9] Length = 1158 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 615/1048 (58%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL +HS +S+++G ++ ++ K+A PA+A+TD NL ++F A Sbjct: 1 MAD-PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + ++ + + +L + +GYQ L L+S+ YL Sbjct: 60 AGMKPIIGADFKVHSEE----------LENELADLTILATDNDGYQNLTMLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL + G +GLI+L+G G + +A + + + L +K F D Y+ Sbjct: 110 VQHQPVIDKEWLVQYG-KGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYL 167 Query: 185 NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LP+VATN+ FLS E ++AH++ +++ + Sbjct: 168 ELVRTGRPDEDAYIHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RP+ +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ + Sbjct: 228 NRPKLYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + +Y +RL+ EL VI +M F GYFLI Sbjct: 283 GDLSTEDFLVVKSREGLERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC D+RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDRL K+I Sbjct: 403 IDFCMDKRDLVIDHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + + +A AD V L+++ + LEG+ R+A HA G+VI + Sbjct: 463 PAEPGMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 522 TDFSPLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++++ IP DD +++ +L + +FQLES GM+ ++ +QPD ED+IALV+L+RPGP Sbjct: 582 PINIASIPMDDKKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 641 Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + +RK+G+E++ H + +L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 642 LQSGMVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADMLRRAMGKKKPEEMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT ++K HYP EF+AA MT +MDN +KI + + I ++PP VN Sbjct: 762 AYALVSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + A+KGVG +++EA F L DFC+R+D+KK+N+RVLE L Sbjct: 822 FNVDEQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA+D G +R L+ +L++ K A ++F + + Sbjct: 882 IKSGAMDRLGPNRATLMATLNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y +GHP++ Y L+ +++ T R +A +V++ Sbjct: 942 EWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAA 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG +T + + E F Sbjct: 1002 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029 >gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158] Length = 1160 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ A+ PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG ++ + + I +L + EGYQ L L+SR Y Sbjct: 60 QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 110 GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + E+ L ++ GLE RL + A+ DY QRLD ELNVI +M F GYFLI Sbjct: 284 GEMTTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFSPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM +Q+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G + ++ T RG A +VV+ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6] Length = 1170 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 497/1061 (46%), Positives = 685/1061 (64%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLFSALEFS A Sbjct: 1 MTNTPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P P +VLL GY+ L++L S +YL Q Sbjct: 61 AGVQPIIGCQVDL----RYFEPAPGERPKPPAP-LVLLAQNEAGYEHLMKLNSCLYLR-Q 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L E+ + +I L+GG GP+ R AE+ + K +F DRLYV Sbjct: 115 GGELPHVTLEELAELAGD-VICLSGGPDGPVGRLLQQGQRPAAEELMQRLKAIFPDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEQGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ + ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P+ Sbjct: 584 HVAEDGSQLYEPPEGAANQINAIPLDDAVTYKLYSAAKTVAVFQVESTGMMDALKRMKPN 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLKQITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ EK+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873 PP VN F V + + Y+L A+K VG R + EA ++PF S+ DF RV+ Sbjct: 824 PPCVNRSEATFNVVNGELVYALGALKNVGVDVMRLVAEARREDGQERPFVSIFDFARRVN 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE + AGA D +R ++ +SL+ + Y+ V + + ++F E G Sbjct: 884 LKKVGKRPLEMMTRAGAFDQLDRNRRRVFESLEALVNYSAAVHDQKNSNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y P L++ + +E +A Sbjct: 943 DLPEPRLAGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMAKAERG 1002 Query: 994 N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+++G+R + S+ YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSQRGNRFAFAQLSDTTGAYEVTIF 1043 >gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212] gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212] Length = 1143 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 418/1034 (40%), Positives = 619/1034 (59%), Gaps = 33/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D++ L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 230 YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI WA Sbjct: 286 EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + R Sbjct: 346 KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + + Sbjct: 406 DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V L++++ KLEGL R+A HA G+VI L+ VP+Y Sbjct: 466 E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602 + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + Q ++D+ IP Sbjct: 525 EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 585 LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMGKK Sbjct: 645 FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K Sbjct: 705 KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y L Sbjct: 765 AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG SR Sbjct: 825 GAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +SL + A+ ++ ++F E + + N S R E+ Sbjct: 885 ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL ++ +G + N++ +A M++ + TR G R+ + Sbjct: 943 LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001 Query: 1019 TFSEPAKEYEANFF 1032 + + + + F Sbjct: 1002 SLEDQTGKIDVTLF 1015 >gi|29654634|ref|NP_820326.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493] gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493] Length = 1143 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS YS+++ + ++ +L + + PA+A+TD NLF+ ++F ++A GI+P Sbjct: 4 SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + D++ L G++ LI+L+SR Y+ + + V Sbjct: 64 IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + EGLI+L+G G + +A S +AE+RL + F R Y+ LQR Sbjct: 111 LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V++LA H +P+VATN FLS+ D+EAH+ + + ++ +RPR Sbjct: 170 RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y K+ EM ++FSD+PEALENTVEIA+RCS L + LP+F + Sbjct: 230 YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVP----ANLKV 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +A GL RL + +DY +RL+ E+ VI +M F+ YFLIVADFI WA Sbjct: 286 EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+++IPVGPGRGSGAGS+ AY+L IT++DPL LLFERFLN +R+SMPDFDIDFC + R Sbjct: 346 KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG E VAQIIT+G++ A+A LRDVGR L +PY VD++ KL+P + + Sbjct: 406 DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + D V L++++ KLEGL R+A HA G+VI L+ VP+Y Sbjct: 466 E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602 + SD VTQF+ +E GL+KFDFLGL+TLT++ ++ + Q ++D+ IP Sbjct: 525 EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL + T +FQLES GM++ + +QPD DI+ALV+L+RPGP+ + +V Sbjct: 585 LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + + +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL ADVLR AMGKK Sbjct: 645 FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM KQ+ F+ G G+ + +A IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K Sbjct: 705 KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA ++ +MDN +K+ F + R N++++PP++N F V +I Y L Sbjct: 765 AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824 Query: 840 AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG A +I+ A+ F L +FCSRVD +K+NRR +E L+ +GA+D FG SR Sbjct: 825 GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L +SL + A+ ++ ++F E + + N S R E+ Sbjct: 885 ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG Y SGHPL ++ +G + N++ +A M++ + TR G R+ + Sbjct: 943 LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001 Query: 1019 TFSEPAKEYEANFF 1032 + + + + F Sbjct: 1002 SLEDQTGKIDVTLF 1015 >gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51] gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51] Length = 1174 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 410/1060 (38%), Positives = 590/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I LL +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A A+ L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 174 RARDEEYVHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRCY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSSEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ + GLE + Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + V++ Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV +G Sbjct: 829 DDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932 ALD G +R LL +L K A+ + H ++F + Sbjct: 889 ALDRLGPHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFDAA 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|304406873|ref|ZP_07388528.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304344406|gb|EFM10245.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1087 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 396/1033 (38%), Positives = 596/1033 (57%), Gaps = 26/1033 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+GA + ++ + A A+A+TD ++ A+ F + GI+P Sbjct: 10 RFVHLHVHSEYSLLDGAARVRDLAARAAELGMDALALTDHGVMYGAIPFYKACKENGIRP 69 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + + P + ++LL GY+ L++LV+ L + Sbjct: 70 IIGCEVYMTAGSRFDKGTRKENP---IYHLILLAKNETGYRNLMKLVTIGQL-EGLHYRP 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI + L EG+I L+ G + + + A+ L +K +FGD Y+ LQ H Sbjct: 126 RIDMESLAA-HAEGIICLSSCLGGEVPQHLLHGRPEEAKAAALRYKAIFGDDYYIELQDH 184 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ +++ LA + L ATN++ +L ED DVL+ + V +DR ++ Sbjct: 185 GIIEQKKVMPELIALAREIGVKLAATNDAHYLQPEDATMQDVLICIGTGKTVEDEDRFKI 244 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM ++F +PEA+ NT EIA +C L + LP F Sbjct: 245 ASDQLYLKSGEEMAALFRHVPEAIANTAEIADKCRLELSLGRAALPTF---RPVPEGMSS 301 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L GL R A G ++RLD+EL VI RM +S YFLIV DFI++A Sbjct: 302 ADFLAELCRDGLASRYA------GAPEPAAQERLDYELAVIERMGYSDYFLIVWDFIRFA 355 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF +RR Sbjct: 356 HERGIRTGPGRGSSAGSLVAYTLNITDVDPLKHKLLFERFLNPERVSMPDIDIDFNDERR 415 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI YV KYG E VAQIITFG++ A+AA+RDVGRA+ +P+ +VDR KLIPN + Sbjct: 416 DEVIAYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMNVPFGEVDRAAKLIPNQLGITL 475 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ REA P + LL+++ K+EG+ RHASTHAAG+VI PL+ VP+ Sbjct: 476 E-EALRISPELREASAKQPRTEALLKMAMKVEGMPRHASTHAAGVVISQEPLTHYVPLQ- 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 +TQ++M+ +E GL+K DFLGL+TL++++++L ++ + G +D I DD Sbjct: 534 AGTDRTALTQYSMENLEAVGLLKMDFLGLRTLSIVERTLRWVKELYGRDIDFRTIADDDP 593 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +L T GIFQLES+G+R+ L+ M+P EDI+++++LYRPGP++ I Y K+ Sbjct: 594 LTYEMLGRGETTGIFQLESTGVRRVLKEMKPSVFEDIVSVLALYRPGPMEFIPKYIQGKH 653 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+ ++ HP ++P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D Sbjct: 654 GQVEVEYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 713 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +++ F+ G+ K G ++ A +++++ +FADYGF ++HAAAY V+++QTA++K HYPV Sbjct: 714 EERAHFVGGSLKQGYAEADANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVP 773 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSLA 840 F+A+ + N K ++ R+ + ++PP VN V F I + LA Sbjct: 774 FMASMLASVTGNQRKTAEYVDACRRMGMDVLPPDVNESGVTFTPVHRAGEARGAIRFGLA 833 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 A+K VGT IM+ A++P+DSL D C RVD + +N+RV+ESLV +GA D R Q Sbjct: 834 AVKNVGTQAIESIMKERAERPYDSLTDMCRRVDLRVVNKRVMESLVQSGATDSLPGHRSQ 893 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL +LD I A K+R N+F ++ + ++ L ++ + E E+ +LG Sbjct: 894 LLGALDEIVDAAAKWRKDREELQINLFGFDE-VINWEVELPDVRPFSTGQKLELERELLG 952 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y SGHP+D + L GI + G MVVS + TRKG + ++ Sbjct: 953 LYLSGHPIDAVEEALSPHGIDRLVDLAEAEDGTLAVFPIMVVSVKPMMTRKGQAMAFLEV 1012 Query: 1021 SEPAKEYEANFFP 1033 + EA FP Sbjct: 1013 EDRIMRVEAVAFP 1025 >gi|78212689|ref|YP_381468.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9605] gi|78197148|gb|ABB34913.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9605] Length = 1172 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 383/1049 (36%), Positives = 583/1049 (55%), Gaps = 33/1049 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVEEAKQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I +A VA K ++++FGD Y+ Sbjct: 118 FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFGDDYYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + +VATN++ +LS++D EAHD L+ V +++ + Sbjct: 177 IQDHGSPEDRIVNVEIVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K EM +F D PE ++ + + + ++ + + + + Sbjct: 237 RLRYTGTEYIKTEEEMGLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR GL RL + DY +R+ EL ++ +M F YFL+V D Sbjct: 297 EGHTPVSYLREVTEQGLRDRLE--LSPEASLPDDYAERMAHELKIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + + FRE ADP+V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ + G +VD Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSGTRVD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPPQDEATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GA + G+ + +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVQGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPNGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ A +D PF SL D C R+ S LNRR LESLV GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLVHCGALDAM 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFS 944 +R QL+ LD + +A K+R + N+F S + Sbjct: 894 DPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKAAPVT 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ ++GFY S HPL P + + G + AMV Sbjct: 954 DYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAMVAEM 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 RQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1] gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1] Length = 1174 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 410/1060 (38%), Positives = 590/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I L +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A A+ L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 174 RARDEEYVHAAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRGY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ + GLE Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVSYEGLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ +D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---- 599 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K +L Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPDLNI 588 Query: 600 -LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV +G Sbjct: 829 NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALVRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932 ALD G +R LL +L K A+ + H ++F ++ Sbjct: 889 ALDRLGPHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDEA 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 QVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39] gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1] gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39] gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1] Length = 1143 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 415/1031 (40%), Positives = 604/1031 (58%), Gaps = 37/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+AA PA+A+TD NL ++F A G++PIIG + Sbjct: 1 MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + + LL GY+ L L+S+ YL + I +WL E Sbjct: 57 ------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HA 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG SG + RA + Q E+ + ++ F D Y+ L R D Sbjct: 110 EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 + +A ++LP+VATN +F++EE +EAH++ +A+ + RP+ +P YL++ +E Sbjct: 170 LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL N+VEIA+RC+ +++ E+ L K+ GL Sbjct: 230 MCELFADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSREGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVGP Sbjct: 285 EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + IA + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIA-EP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 +E AD V L++ + LEG R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 ALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R V + IP DD ++ Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRN 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 I H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 AISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 704 MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + + ++PP +N+ F V DN I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L DFC+R+D KK+N+RV+E L+ AGALD G R ++ Sbjct: 824 GVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 S+D+ + A + ++F + + + VR E E+ LG Sbjct: 884 ASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHP+D Y L K E+ T R ++ +A +V++ + T++G+RIG +T Sbjct: 944 YLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1003 Query: 1022 EPAKEYEANFF 1032 + + E + Sbjct: 1004 DRSGRMEVMLY 1014 >gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1173 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 411/1065 (38%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A D PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99] gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99] Length = 1160 Score = 769 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ A PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG +++ + + I +L + +GYQ L L+SR Y Sbjct: 60 QGMKPIIGADFNVN----------SEAMGDELTQITVLAADNQGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 110 GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPREYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE L + Y +RLD ELNVI +M F GYFLI Sbjct: 284 GEMTTEDFLVVKSKQGLEERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDEHGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPEEMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G + ++ T RG A +VV+ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48] gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48] Length = 1174 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 411/1061 (38%), Positives = 590/1061 (55%), Gaps = 56/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL+VHS +SL++G + + + +A PA+AITD +N+ S ++F + A AGI+P Sbjct: 4 SFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G L + G + I L +GY+ L EL+SR + Q V Sbjct: 64 ICGADLWLA----------GADSEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLV 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I W+ +EGLI L+ G G I A AE L + +F +R YV +QR Sbjct: 114 IIQRDWIA-PASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQRT 172 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 +R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 173 NRAGDEEYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRPRG 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I Sbjct: 233 YSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGI---- 288 Query: 308 ENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ LR+ + GLE + Q Y RL FEL++I +M F GYFLIV D Sbjct: 289 DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 349 FIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 409 CMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A + R+ +D + +++ KLEG+ R HA G+VI L+ Sbjct: 469 VGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS--- 599 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + K +L Sbjct: 528 SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPDVN 587 Query: 600 --LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 588 IDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647 Query: 658 IVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L A Sbjct: 648 GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY Sbjct: 708 DMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 768 LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV 827 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++L+ + Sbjct: 828 NDEGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRS 887 Query: 889 GALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEK 931 GALD G +R LL +L K A+ + H ++F ++ Sbjct: 888 GALDRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMFDE 947 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 948 ADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPARD 1007 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1008 TQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|289523190|ref|ZP_06440044.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503733|gb|EFD24897.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1144 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 383/1034 (37%), Positives = 605/1034 (58%), Gaps = 32/1034 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YSLL+GA+ + +++ + A+A+TD +F A+EF + G++PI Sbjct: 10 FVHLHVHTEYSLLDGAIKIKDLVSRAKEWDMGAVAVTDHGVMFGAIEFYYECMKQGVKPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ +D + + + QG ++LL EGY+ L++LVS ++ R Sbjct: 70 MGCEVYVDPKGHTRREGQGGN-----YHLLLLAENEEGYRNLVKLVSIAN-VEGFYYKPR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L + ++GLI + +G + A+++ L ++ +FG+ Y+ + + Sbjct: 124 VDYDLLSKY-SKGLIASSACLAGEVPSLILSGRYDEAKEKALLYRDIFGEGNFYLEIMSN 182 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ V++LA +PL+ATN++ +L D + H++L+ V ++ V+ K+R + Sbjct: 183 GLSEQAVANKHVIELARKANIPLLATNDAHYLESYDADWHEILLCVQTNSTVNSKNRFQF 242 Query: 249 TPDHYLKNR--SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + +L +AL NTV+I+ RC+ L+ +LP + E + Sbjct: 243 GSKEFYLRSPVEMWKIFGDELSDALHNTVDISERCNVKLEFGQYMLPEYKVPEGE----T 298 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ L KA GL R Q+Y +R+++EL VI +M F+GYFLIV DFI Sbjct: 299 LESYLALKAQEGLARRFGG-----REIPQEYIKRMEYELGVIKQMGFAGYFLIVQDFINA 353 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+ IPVGPGRGS AGS+ AYAL IT+IDP+ ++LLFERFLNP+R+SMPD D D R Sbjct: 354 AKERGIPVGPGRGSAAGSLVAYALRITEIDPITYNLLFERFLNPERISMPDIDTDISDKR 413 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV KYG ++VAQIITF ++++AA+RDVGRAL MPY VD++ KLIP + + Sbjct: 414 RDEVIDYVVEKYGRDKVAQIITFDRMKSRAAVRDVGRALDMPYPDVDKVAKLIPFNVSS- 472 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ + + V +LL+ + +EG+ RH S HAAG+VI PL +VP+ Sbjct: 473 -IEEALELSHELKALYDGNREVKQLLDYASHIEGIARHCSQHAAGVVISPEPLVNIVPL- 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605 + + VTQ+ M+ +EK GL+K DFLGL+TL++++++L +A+ DL+ +P DD Sbjct: 531 KAINGTQIVTQYPMEPLEKLGLVKMDFLGLRTLSMIEETLKNIAKNGKKVPDLTQLPMDD 590 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663 T+ +L T+G+FQLESSGMRQ L+ + PD +DIIA+++LYRPGP+ + +V Y Sbjct: 591 RATFEMLQRGDTMGVFQLESSGMRQLLKKLCPDSFQDIIAVLALYRPGPLGSGMVDQYIE 650 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ I HP ++ LKET G+I+YQEQVMQIA L+GY+L +AD+LRRAMGKK E Sbjct: 651 RKHGRSPISYPHPALEEALKETYGIILYQEQVMQIAARLAGYTLGQADILRRAMGKKKVE 710 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM++Q++ F+ G +N +S A IF+L+ FA YGFNKSH+AAYA+ISYQTA++K HY Sbjct: 711 EMEEQRQVFVKGCLENAVSAEQANEIFDLIQYFAGYGFNKSHSAAYAMISYQTAYLKAHY 770 Query: 784 PVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 PVEFLAA ++ + ++I ++ ++ R I+++PP VN F + + + L A+ Sbjct: 771 PVEFLAAFLSSHIGAKKEILARYVREVRSDGIEVLPPDVNESEAGFTAVGDVVRFGLTAV 830 Query: 843 KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 G+ I++A + P+ SL DF SR+D + +N+ V+ESL+ GA D +R Q+ Sbjct: 831 AKAGSGAVEAILKARKEGGPYKSLWDFVSRIDLRAVNKSVIESLIGVGAFDGLHSNRRQI 890 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLG 960 L+SL + + +++++ + +F+ + D + L + E E+ +G Sbjct: 891 LESLPVLLEARARLDEDKF--QQRLFSLDGNDSLDVEPALVDIEDFEFHEKLELEKDAVG 948 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y SGHP + Y+ +RK E + + +V +K T+KG +G V Sbjct: 949 LYISGHPFEAYEERVRKYAYCTPSELIHWCSPQAKPLVGGIVTDVAEKYTKKGDLMGIVG 1008 Query: 1020 FSEPAKEYEANFFP 1033 + + E FP Sbjct: 1009 VEDLDAKLEVVCFP 1022 >gi|304409577|ref|ZP_07391197.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183] gi|307303935|ref|ZP_07583688.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175] gi|304352095|gb|EFM16493.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183] gi|306912833|gb|EFN43256.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175] Length = 1157 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G + +A +S E ++ F DR ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 1167 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 507/1056 (48%), Positives = 683/1056 (64%), Gaps = 37/1056 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F+HL+VHS+YSL EGA+ + ++ Q PA+A+TDT NLF ALEF+ A Sbjct: 1 MPHA-DFIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLD 123 AG+QPIIG L I + P +VLL EGY+ L LVS+ +L Sbjct: 60 AGVQPIIGTVLGITRVGPAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLES 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 ++ L L E + GLI LTGG +G + R +A L K+LF RLY Sbjct: 120 DPLAGPQVALDAL-EGHSGGLIALTGGPAGSVGRLLHEGQKDLALDVLERLKRLFPGRLY 178 Query: 184 VNLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 V LQRH G + E ++ LAY H LPLVATN+ F +E+ YEAHD L+ +A Sbjct: 179 VELQRHEGGRGQFAAVENAIEPALIDLAYAHGLPLVATNDCYFATEDMYEAHDALLCIAE 238 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 +SQ DR R+TPDH K+ EM +F+DLPEA++NTV IARRCS++L+ + Sbjct: 239 GAYLSQDDRRRLTPDHRFKSAEEMRRLFADLPEAVDNTVAIARRCSYLLKPIK----PIL 294 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIA 349 + + E++ELR ++ AGLE+RL + + Y +RL+FEL+VI Sbjct: 295 PPFACEGGRTEDDELRAQSRAGLEMRLEKVVFTPEMTPEQREETRKTYFERLEFELDVIV 354 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +MKF GYFLIV+DFI+WAK +IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLN Sbjct: 355 KMKFPGYFLIVSDFIKWAKNEDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLN 414 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFCQDRR+EVIRYVQ KYG++RVAQIITFG LQA+A LRDVGR LQMPY Sbjct: 415 PERVSMPDFDIDFCQDRREEVIRYVQKKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPY 474 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTH 528 QVD++CK++PN+PA+PV+LQ D R+AR +D +V L++I+ KLEGLYRHASTH Sbjct: 475 GQVDKICKMVPNNPANPVTLQQALDSEEMLRQARDSDDTVRHLVDIALKLEGLYRHASTH 534 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VIGDRPL +LVP+YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++D Sbjct: 535 AAGVVIGDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDL 594 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + ++ DL+ +P DD ++Y LL+ G+FQLESSGMR L ++P+ +EDIIALVS Sbjct: 595 IPEKP---DLTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVS 651 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+DNI Y KNG+EK +H ++ +LKET G++IYQEQVMQIAQ+LSGYSL Sbjct: 652 LYRPGPMDNIPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLG 711 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKKIKEEMD Q++ F GA G+ +A IF+ + KFA YGFNKSHAAA Sbjct: 712 GADLLRRAMGKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TA++K ++PVEF+AASMTL++ N +K+ F Q+ + ++++ P +N F Sbjct: 772 YALVAYHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVKLLTPDINKSDSIF 831 Query: 829 KVGD-----NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882 V + Y+LAA+KGVG + ++ E + PF SL DF R+D K +N+R L Sbjct: 832 GVEQLADGSKAVRYALAAVKGVGLPAMKAVVEERRRNGPFRSLFDFARRLDLKTINKRQL 891 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN---KHENIFAHEKGTFSDKIT 939 E+L AGA D +R Q+ +L+ I +YAQ R + G + Sbjct: 892 ENLACAGAFDGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGFGGGGGGLPEPE 951 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIR 996 + K + ++E +GFY S HPLD Y L +M + E I + Sbjct: 952 MPKVKDWEPLEKLKHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYK 1011 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++VSK++K + G+R +V S+ YE F Sbjct: 1012 MAGIIVSKKEKTAKSGNRFAFVELSDATGGYEVTLF 1047 >gi|153941212|ref|YP_001392730.1| DNA polymerase III DnaE [Clostridium botulinum F str. Langeland] gi|152937108|gb|ABS42606.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str. Langeland] gi|295320711|gb|ADG01089.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str. 230613] Length = 1185 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 372/1071 (34%), Positives = 595/1071 (55%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 EK P +V L H+ YSLL+ + +++++ + +IAITD ++ ++F ++A Sbjct: 8 EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC++ + + + +VLLV GY+ L+E+VS ++ Sbjct: 68 GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSNAS-VEGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 R+ +L++ +EGLI L+ G + + + A + L +K +F + Y+ Sbjct: 124 YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEGFYLE 182 Query: 186 LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQ H ++ +V+++ ++PLVATN+ ++ +EDY++HD+L+ + V +++ Sbjct: 183 LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242 Query: 245 RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + YLK+ EM FS +PEALENTV+I+ C+F H LP+F +E D Sbjct: 243 RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302 Query: 304 QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348 LR G L + + I K + + +RL++EL++I Sbjct: 303 Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + YFLIV DFI++A + I GPGRGS AGS+ AY L IT IDP++++L+FERFL Sbjct: 359 KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD D DFC +RR EVI YV KYG V+QIITFG++ A+A +RDVGRA+ P Sbjct: 419 NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y++VDR+ K+IP + +A+ + +EA + V L+++++ LEGL RH STH Sbjct: 479 YAEVDRIAKMIPTVLNITI-NKALELNPELKEAYDNEERVKALIDVARALEGLPRHTSTH 537 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+VI + L VP+ ++ + VTQF M +E+ GL+K DFLGL+TLT+++ ++ Sbjct: 538 AAGVVIASQSLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + +DL I F+D E Y ++ T+G+FQLES+GM ++ ++PD +EDIIA + Sbjct: 596 IKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 SLYRPGP+ I Y KN I ++P+L T I+YQEQVMQI + L+GYS+ Sbjct: 656 SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759 +D++RRAM KK + M++++ FI G NGI + +A ++F+ + FA Y Sbjct: 716 GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAAAYAV+ +QTA++ +YP EF+AA + + +K+ + A+ I+I+ P Sbjct: 776 AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 ++N +F V DNRI + L A+K VG +I+ + K F L DF ++VD+ +N Sbjct: 836 NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936 +R++ESL+ AGA DC R ++L + I Q ++N N+F + S Sbjct: 896 KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987 I + + E+ + G YFSGHPL+ Y+ L+ + + Sbjct: 956 DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015 Query: 988 -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + + M+ +K TR + ++ + E FP Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066 >gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195] gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195] gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678] Length = 1157 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G + +A +S E ++ F DR ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1] gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1] Length = 1173 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 419/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LLV A+GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I W+ E EGLIML+ G I A + AE + +F DR Y+ Sbjct: 109 RNGMVIIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D + V LA PLVATN+ F+ +ED+ AH+ + + + Sbjct: 168 EVQRTNRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + YLK+ EM +FSDLP+A+ENTVEIA+RC+ +++ LP + + Sbjct: 228 RRSKNYSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV RA + DRL K Sbjct: 404 FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EPPLDIAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + + + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + R + H ++F Sbjct: 883 LIRSGALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEEDADVYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|260434289|ref|ZP_05788259.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109] gi|260412163|gb|EEX05459.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109] Length = 1172 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 383/1049 (36%), Positives = 582/1049 (55%), Gaps = 33/1049 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERARQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I +A VA K ++++F D Y+ Sbjct: 118 FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFADDYYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +VV++A + +VATN++ +LS++D EAHD L+ V +++ + Sbjct: 177 IQDHGSPEDRIVNVEVVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K EM +F D PE ++ + + + ++ + + + + Sbjct: 237 RLRYTGTEYIKTEEEMDLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR GL RL + DY +R+ EL ++ +M F YFL+V D Sbjct: 297 EAHTPVSYLREVTEQGLRDRLE--LSPEAPLPDDYAERMAHELKIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFARERNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRSEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + + FRE ADP+V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ + G +VD Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSGTRVD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D ET+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPPQDEETFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GA + G+ + +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVKGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPNGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ A +D PF SL D C R+ S LNRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLIHCGALDAM 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFS 944 +R QL+ LD + +A K+R + N+F S Sbjct: 894 DPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKAAPVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ ++GFY S HPL P + + G + AMV Sbjct: 954 DYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAMVAEM 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 RQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042 >gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b] Length = 1167 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 501/1058 (47%), Positives = 675/1058 (63%), Gaps = 48/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L ++ PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSSSPRFIHLRVHTEYSLLEGAVRLKSLAGLCEKAGMPAVAVTDTNNMFAALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+D+D + T G+ P P +VLL GY+ L++L S +YL Sbjct: 61 AGIQPIMGCQVDLDYLE----TQPGERAKPPAP-LVLLAQNEAGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q + L+ L E +G+I LTGG GP+ R A+ + F DRLYV Sbjct: 116 G-QLPHVTLAEL-EAHAQGVICLTGGPDGPVGRLLQAGQRPAAKALMGQLLAAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY LPLVATN+ F YEAHD L+ VA T Sbjct: 174 ELQRHPGEDGAPEAERLTERGFVEMAYAMGLPLVATNDVYFPDAGMYEAHDALLCVAEGT 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K EM ++F+DLPEALENTVEIARRC+F + Sbjct: 234 YVDQAEPRRRLTAQHYFKTPQEMATLFADLPEALENTVEIARRCAF--------GAYRRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E +ELR +A GLE RLA I ++Y +RL+FEL +I M F GYF Sbjct: 286 PILPRFADDEVDELRRQAKEGLEARLA--VIPHAASVEEYHKRLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKEQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVD+L K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDKLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+Q +A + R REA ++ VDRLL K+EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIQQALAQEDRLREAARSEEVVDRLLNYGMKVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++ + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIGQIHAEGRDL 583 Query: 597 DLS------------------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +TY L T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGSPIYEPFEGAENDIGQIPLDDAKTYELYARARTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KN + +HPLID +L ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPKYCEVKNALSERDRLHPLIDHILDETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GY+L AD+LRRAMGKKI+ MD ++ +FI+GA NG+ A+ ++ LL KFA+ Sbjct: 704 AQEMAGYTLGGADLLRRAMGKKIQAAMDAERPKFIAGAKANGVDDAKALEVWNLLDKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLQLPYA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F+V ++Y+L A+K VG R I+E DKPF +L D RVD K++ Sbjct: 824 PPCVNRSDAVFQVRGGVLHYALGALKNVGVEAMRLIVEGRGDKPFATLYDVARRVDLKRI 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ S++ + Y+ + +T+ ++F E G + Sbjct: 884 GKRPLEMLARAGAFDELDRNRRRVFDSIEPLMNYSAAIFDQKTSSQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI 995 L + R E + +GFY SGHPLD Y LR+ +K +E A +G + Sbjct: 943 PRLSPVEDWLPAERLTEEFKAIGFYLSGHPLDDYMGALRRKDVKTLDEVTAMAEQKGALV 1002 Query: 996 -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R +V S+ +E F Sbjct: 1003 AKMAGVVSGRQERKSARGNRFAFVQLSDTTGGFEVTLF 1040 >gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1173 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047] gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius ATCC 11116] gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047] gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius ATCC 11116] Length = 1159 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 403/1048 (38%), Positives = 596/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R ++ R ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNQERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|113955565|ref|YP_730835.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9311] gi|113882916|gb|ABI47874.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9311] Length = 1174 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 385/1052 (36%), Positives = 580/1052 (55%), Gaps = 36/1052 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVGRAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + L++ G EGLI+ T G I +A + VA L +++ FGD Y+ Sbjct: 118 FSRACVDKQLLKQYG-EGLIVATACLGGEIPQAIMRDRPDVARDVALWYQQTFGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A +PL+ATN++ +L+ D EAHD L+ V ++S Sbjct: 177 IQDHGSPEDRIVNVEIVRIAKELGIPLIATNDAHYLTRNDVEAHDALLCVLTGKLISDVK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T YLK+ EM +F D P+ + + + + ++ + + + + Sbjct: 237 RLRYTGTEYLKSEEEMSRLFVDHLEPDVVAEAISNTVQVADKVEDYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR GL RL + +Y RL EL ++ +M F YFL+V D Sbjct: 297 EPHTPVSYLREVTEQGLRNRLEIDSET--AIDPNYGDRLSHELKIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + + FRE DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLAAMIGEESPNPEFREKYKKDPVVKRWVDMAMRIEGTNKTYGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ +A KVD Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAATIGEKVD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P +D ETY LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPLEDPETYALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H I+P+L+ET G+++YQEQ+M+IAQ ++GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGRETIDFAHHSIEPILQETYGIMVYQEQIMKIAQDMAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS G+ K +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVQGASDRGVDKKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP +N +DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDINASGIDFTPKGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ + + F SL D C R+ S LNRR +ESL+ GA+D Sbjct: 834 LFGLSAVRNLGDGAIRAVIGSRESEGAFQSLADLCDRLPSAVLNRRSMESLIHCGAMDAL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----------KITLE 941 +R QL+ LD + +A K+R + N+F SD Sbjct: 894 EPEANRAQLMADLDLLLDWATSRAKDRASGQGNLFDLMAAASSDGAEDAGTDLSLAPKAP 953 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + + + E+ ++GFY S HPL P + + G + AMV Sbjct: 954 PVKDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSAIAMV 1013 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ +T + EA FP Sbjct: 1014 SEMRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1045 >gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2] Length = 1165 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 489/1057 (46%), Positives = 677/1057 (64%), Gaps = 48/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGA+ + + +A PA+A+TD+NN+F ALEFS+ A Sbjct: 1 MTNDPRFIHLRTHTEYSLLEGAIPVKKLPGLVAGMGMPAVAVTDSNNMFCALEFSEGASK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPI+GCQ+D+ T + IVLL + GY L++L S YL Sbjct: 61 AGIQPIVGCQVDVTF-----ATPEPGKRAEAPAPIVLLAQSEAGYMNLMKLNSCAYLDAD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L + EGLI L+GG GP+ R AE + ++ DRLY+ Sbjct: 116 G-QLPQVSLDEFAQYH-EGLICLSGGPDGPVGRLLRQGQRPKAEAIVDRLAAIYTDRLYI 173 Query: 185 NLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 LQRH G +R E V++AY LPLVATN+ F E YEAHD L+ ++ Sbjct: 174 ELQRHPGDGLPEAERLSERGHVEMAYAKGLPLVATNDVYFPKTELYEAHDALICISEGAY 233 Query: 240 -VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 Q+ R R+TP HY+K+ EM ++F+DLPEA+ENTVEIA+RC+F + Sbjct: 234 VDQQEARRRLTPQHYMKSPQEMATLFADLPEAIENTVEIAKRCAFK--------TYKRDP 285 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 +E ELR +A GL+ RLA I ++Y +RL+FEL +I M F GYFL Sbjct: 286 ILPKFADDEVAELRRQAEQGLKDRLA--VIPHAAPVEEYEKRLEFELGIIEGMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WAK IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPDF Sbjct: 344 IVADFIKWAKDEGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC DRR+EVIRYVQ+KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+ Sbjct: 404 DIDFCMDRREEVIRYVQDKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKM 463 Query: 479 IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + PVS++ +AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGDR Sbjct: 464 IPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDR 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------ 591 PL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + Sbjct: 524 PLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVELIKKAGRPLN 583 Query: 592 ------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 G + D+ IP DD ++Y L ++ T +FQ+ESSGM AL+ M+P+C Sbjct: 584 IAADGTQLYDVLEGFEYDIGAIPLDDEKSYALYSSAKTTAVFQVESSGMMDALKRMKPNC 643 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 IEDI+ALV+LYRPGP++NI Y KNG++ + SIHP ID +L ETQG+I+YQEQVM+IA Sbjct: 644 IEDIVALVALYRPGPMENIPTYCEVKNGQKDLESIHPSIDHILAETQGIIVYQEQVMEIA 703 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q+++GYSL AD+LRRAMGKKI EEM K++ +F +GA NG+ A +F+LL KFA+Y Sbjct: 704 QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFANY 763 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818 GFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ I+ P Sbjct: 764 GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGIYFQEVKKGLGIEYTP 823 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 P VN F V D ++ Y+L A+K VG + I+E DK F +L DF R D K+++ Sbjct: 824 PCVNRSMATFDVKDQKLVYALGALKNVGVEAMKLIVEGRGDKEFVNLFDFARRCDLKRIS 883 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R +++ SLD + Y+ + +++ ++F G + Sbjct: 884 KRPLEMLARAGAFDVLDPNRRRVMMSLDALTAYSAAIHDQKSSNQVSLFGDA-GDDLQEP 942 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NI 995 L + R E + +GFY SGHPLD Y L++ + ++ + G + Sbjct: 943 RLMGGEDWLPAERLAEEFKAIGFYLSGHPLDDYMGPLKRKQVLTLDDVI-VRAGKGAAIV 1001 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A + +Q++K+ +G+R +V S+P +YE F Sbjct: 1002 KMAGTISGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1038 >gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 1170 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 496/1061 (46%), Positives = 676/1061 (63%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L L +E +I L+GG GP+ R AE + K +F DRLYV Sbjct: 116 S-ELAHVTLEELAA-HSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ + ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HVAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + A DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE L AG D +R ++ SL + Y+ V R + ++F E G Sbjct: 884 LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y P L++ + +E A Sbjct: 943 DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 994 N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ + YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043 >gi|78777108|ref|YP_393423.1| DNA polymerase III subunit alpha [Sulfurimonas denitrificans DSM 1251] gi|78497648|gb|ABB44188.1| DNA polymerase III, alpha subunit [Sulfurimonas denitrificans DSM 1251] Length = 1186 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 391/1068 (36%), Positives = 611/1068 (57%), Gaps = 53/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F HL +H+ YSLL+GA L N++ ++ ++A+TD N+F A++F Q+ A Sbjct: 1 MSPQP-FTHLHLHTEYSLLDGANKLTNLVKQVKELGMTSVAMTDHGNMFGAIDFYQQMRA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + I + I L +GY+ L+ L S+ ++ + Sbjct: 60 AGIKPIIGMEGYIHNGGS-----MDDKSSKQRFHICLFAKNQKGYENLMYLSSKAFI-EG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI + L+ +EGLI + G ++ ++ A+ L + Sbjct: 114 FYYFPRINKNELRA-HSEGLICTSACLQGEVNWHLNLSNERNVKNGALGYDGAKAVALEY 172 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 K++FGD Y+ L RH D+ + QV++L+ ++ +VATN++ + ED + H+ M Sbjct: 173 KEIFGDDFYLELMRHGIGDQLFIDEQVLKLSKELDIKVVATNDTHYTFAEDAQYHEAFMC 232 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + + + +R R + + YLK+ ++M +F+D+PEA+E+T EI +C+ L++ P+ Sbjct: 233 IGMNKLYDDPNRMRHSVHEFYLKSPAQMAMLFADIPEAIEHTQEIVEKCNLELKLGDPVP 292 Query: 293 PRFI-----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 P F E D + + + GLE RLA A Q+YR RL Sbjct: 293 PNFKFSAEYARNDGLEINGSDKNEIDAEYFVYRCKIGLEHRLAHVA---EEKHQEYRDRL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 DFE+NVI MKF GY LIV DF++ AK+ I VGPGRGS AGS+ AY+L ITDIDP+++ Sbjct: 350 DFEMNVINSMKFPGYMLIVWDFVKVAKEKGIAVGPGRGSAAGSLVAYSLEITDIDPMKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D+DF Q RR EVI YV KYG +VAQIITFGSL AK +RDV Sbjct: 410 LLFERFLNPERVSMPDIDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLL 512 R L MP S+ D++ KL+P++ ++ + + + +E +D + R+ Sbjct: 470 ARVLDMPLSEADKMAKLVPDELGITLNGRTKNGEFIAGAFQKEPKLKELIDSDANAARVW 529 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 E ++KLEGL R++ HAAG+VI + L + P+Y+ D+ VTQ+++ ++E LIKFD Sbjct: 530 EFAKKLEGLKRNSGIHAAGVVISNEELWKKTPIYKPSGEDVFVTQYSLNYLEDVDLIKFD 589 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTL ++ ++ + R K + I +D + Y ++ T+G+FQ+ESSGM+ Sbjct: 590 FLGLKTLDVIDNAIKLIKFRYNKDVIWHEIDENDPKVYDVIRGGNTVGMFQIESSGMQDL 649 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++PD ED+IA+++LYRPGP+++ ++ + RK+G+EKI ++P+LK T GVI Sbjct: 650 NKQLKPDSFEDLIAVLALYRPGPMESGMLKSFIERKHGREKIEYTFDSMEPILKNTYGVI 709 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL +D++RR+MGK K++M + F GA G+ A + Sbjct: 710 VYQEQVMQIVQTVGGFSLGYSDIIRRSMGK--KKDMSVYNDEFAKGAQSQGLDYAEASKL 767 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+++ KFA YGFNKSH+AAYA+I++QTAW+KT+YP EF+AA +T + DN +K+ ++ + Sbjct: 768 FDIIEKFAGYGFNKSHSAAYAMITFQTAWLKTYYPNEFMAALLTSDKDNTDKVVRYIDET 827 Query: 810 RQFNIQIMPPSVNTPCVDFKV--GDNR--IYYSLAAIKGVGTTTARHIMEASADK-PFDS 864 ++ I++ PP + ++F DNR + + L AIKGVG I+E AD F S Sbjct: 828 KRMGIELSPPDICDSQLEFSAITKDNREIVLFGLGAIKGVGEAAVLSILETRADGGEFKS 887 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 LEDF +R++ K+N+RV+ES++ AG D FG+SR LL ++ I A+ + N Sbjct: 888 LEDFVNRIEPSKVNKRVVESIIKAGGFDRFGFSRKALLDQIEKIVDTAKDASMAKKNAVG 947 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++F + S ++ L E E+ +GFY SGHPLD ++ L ++ Sbjct: 948 SLFGDDSEITSVELKLSNSPEYELKEILEFEKETIGFYISGHPLDEFRDKLDELDYTLSS 1007 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E + G + +K ++KGS+ G V + E F Sbjct: 1008 ELESVKDGTYAIFIGKIEEIVKKTSKKGSQFGIVNLMDFHGNIELMLF 1055 >gi|255322503|ref|ZP_05363648.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277] gi|255300411|gb|EET79683.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277] Length = 1326 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 391/1062 (36%), Positives = 599/1062 (56%), Gaps = 45/1062 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL +H+ YSLL+GA + + + A AITD N+F A++F + Sbjct: 1 MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKKQGVKAAAITDHGNMFGAIDFYKTMKN 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+P+IG + I + L G + L+ GY+ L+ L S Y+ + Sbjct: 61 EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFK 175 RI L+E +EG+I + G ++ + A++ L +K Sbjct: 115 FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173 Query: 176 KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD Y+ + RH D+ R ++++LA + ++ATN++ + ++ +AH+V M + Sbjct: 174 EVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRADAHEVFMCI 233 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS----------- 282 A + ++ +R R + + Y+K ++M +F+D+PEA+ NT EI +C Sbjct: 234 AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLSIKLGDATPP 293 Query: 283 ---FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 F L+ A E + + ++ GLE RL ++YR Sbjct: 294 NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEERLK---FVTAERHEEYRT 350 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL E+++I +M F GY +IV DFI AKK +PVGPGRGS AGS+ AY+L ITD+DPL Sbjct: 351 RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV KYG VAQ+ITFG L AK +R Sbjct: 411 YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R MPY++ D + KLIP++ + QA + + E ++ + +R+ + + LE Sbjct: 471 DVARVCDMPYAEADAMAKLIPDELGITLE-QAFEKEPKIGELIASNSNANRIWKFALDLE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 GL R+A HAAG+VI + L P+ + D VTQ+++K++E LIKFDFLGLK Sbjct: 530 GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589 Query: 578 TLTLLQKSLDFLAQRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT++ ++ + +R K + +D +TY +++ TLG+FQ+ES GM++ M+ Sbjct: 590 TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PDC EDIIA++SLYRPGP+D I + RK+G E I I P + P+L+ T GVI+YQEQVM Sbjct: 650 PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELQPILEPTYGVIVYQEQVM 709 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL AD++RRAMGKKIKEEMD+ K +FI GA G+ A +FEL+ F Sbjct: 710 QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAEAQGLDGKKADELFELILHF 769 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAY +++QTA++KT+YP EF+AA +T E N +KI ++ + ++ +I I Sbjct: 770 ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829 Query: 817 MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 +PPSVN +F V G + I Y L AIKGVG +I+E A F ++DF SRV Sbjct: 830 LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D+ K+N++V ESL+ +G+ D FG +R +L +LDNI + + + N E++F ++ Sbjct: 890 DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949 Query: 933 TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + K +L S + + E +G Y SGHPLD Y+ + K+ ++ Sbjct: 950 MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + L + + ++K G ++G + + E F Sbjct: 1010 NGEMLLVGKIEDLTTRISKKNGKKMGTIEMLDFHGTVEIAVF 1051 Score = 57.5 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRI 1015 +G FS HPL+ YK + ++ ++ + + I + + + ++K G Sbjct: 1095 EAMGMDFS-HPLEKYKEQIEQIKHTPSKDFGKIDKTSEILVVGKIAEIAKIPSKKTGKEF 1153 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++ + ++ F Sbjct: 1154 MMLSVMDLFGTFKVAAF 1170 >gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10] Length = 1170 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 496/1061 (46%), Positives = 676/1061 (63%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L L +E +I L+GG GP+ R AE + K +F DRLYV Sbjct: 116 S-ELAHVTLEELAA-HSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPDAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ + ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HAAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + A DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE L AG D +R ++ SL + Y+ V R + ++F E G Sbjct: 884 LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y P L++ + +E A Sbjct: 943 DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 994 N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ + YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043 >gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617] Length = 1160 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 414/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G +++ A+ PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG ++ + + I +L + +GYQ L L+SR Y Sbjct: 60 QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 110 GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RLD ELNVI +M F GYFLI Sbjct: 284 GEMSTEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G + ++ T RG A +VV+ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 1173 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 408/1065 (38%), Positives = 597/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+ +TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AG +KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|24373212|ref|NP_717255.1| DNA polymerase III subunit alpha [Shewanella oneidensis MR-1] gi|24347436|gb|AAN54699.1|AE015610_3 DNA polymerase III, alpha subunit [Shewanella oneidensis MR-1] Length = 1158 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 420/1047 (40%), Positives = 603/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NNL ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q ++ ++ EGYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + V I WL G+++L+GG G I +A ++ E +++ F R ++ Sbjct: 110 VQGRVVIDQEWLITYNP-GILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V +A +P+VATN +FL ED+EAH++ +A+ ++ Sbjct: 169 ELLRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL NTVEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RLA A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRS 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + IP DD ++ LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + I+PP VN Sbjct: 763 AYALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + + Sbjct: 883 CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG ++ A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029 >gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1] gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1] Length = 1159 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 405/1048 (38%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSTLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EG+I+L+GG+ G I + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R ++LA +H LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 169 ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ EM +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96] gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163] Length = 1160 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 414/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G +++ A+ PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG ++ + + I +L + +GYQ L L+SR Y Sbjct: 60 QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 110 GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL + +Y +RLD ELNVI +M F GYFLI Sbjct: 284 GEMSTEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G + ++ T RG A +VV+ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|78779238|ref|YP_397350.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9312] gi|78712737|gb|ABB49914.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9312] Length = 1165 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 376/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+ L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K GI+PI Sbjct: 3 FIPLHNHSDYSLLDGASQISKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKEKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ + + +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNRTGYKNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I L + +EGLI+ T G I +A VAE L +K LF D Y+ + Sbjct: 119 SRPCIDKFLLSKY-SEGLIISTACLGGEIPQAILKGRLDVAEDIALWYKNLFADDFYLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + R Sbjct: 178 QDHGSIEDRIVNIELLRIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T Y+K+ +EM+ +F D + +++ V S ++V + K + Sbjct: 238 LRYTGTEYIKSENEMLELFKDHIDDESIKEAVNNTVEISQKIEVFDLFGKYRMPKFPLNE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + L + GL RL + + ++Y++RL EL +I M F YFL+V D+ Sbjct: 298 DTDSFSLLTQLSNEGLLKRLKKNTLT--EVDENYKKRLSSELKIIKDMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SMPD D DFC Sbjct: 356 IKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475 Query: 484 AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + D FR+ + D V + ++++ ++EG + HAAG+VI PL Sbjct: 476 GKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWIDLALRIEGTNKTYGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 +LVP+ R+ +TQ++M IE GL+K DFLGLK LT+++K++ + Q G +++ Sbjct: 536 DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTGKTINI 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 595 DNLPQNDDKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMVKHRNIFVDGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K H+PV ++AA +++ + +K++++ + I+++ PS+N +DF + +N+I Sbjct: 775 AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGIDFTIKNNQIL 834 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894 + L+AIK +G + R+I+E + F SL D C R+ S LN+R +ESL+ GALD F Sbjct: 835 FGLSAIKNLGDSAIRNIIENRNNSGSFKSLSDLCDRLPSNVLNKRSIESLILCGALDEFS 894 Query: 895 -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSV 950 +R QLL L+++ ++A ++R + N+F ++ L K + Sbjct: 895 NNNNRAQLLSDLEHVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVDDYSLID 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+++LGFY S HPL + + + T + L M+ +Q TR Sbjct: 955 KLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISVSQLEETKDRTKVSLVGMIPELKQITTR 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG R+ V + + EA FP Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae 642] Length = 1173 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2] Length = 1135 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 525/1012 (51%), Positives = 697/1012 (68%), Gaps = 12/1012 (1%) Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 + + + AD QPA+A+TD +N+F ALEFS+K GIQPIIGC L +D D Sbjct: 2 KIPKLAELAKADHQPALALTDRDNMFGALEFSEKLAGVGIQPIIGCALAVDFGDVDPNAR 61 Query: 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147 + P IV+L ++ EGY+ L+ L SR +L G+Q I WL++ + GLI L Sbjct: 62 NAQALGPA--RIVMLAASQEGYRSLMRLNSRAFLDMPGQQIPHIKAEWLKDDTS-GLIAL 118 Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYT 206 TGG GP+ +A ++A +R+ LFGDRLY+ LQRH +R ES ++ +AY Sbjct: 119 TGGPEGPVSQALTAEQPELALQRVEKLVGLFGDRLYIELQRHGLDSERRVESALIDIAYG 178 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266 LPLVATN F + +DYE+HD L+ +A ++++ +R +TPDH K R+EM +F+D Sbjct: 179 KGLPLVATNEPYFATADDYESHDALLCIAGGRLIAETERAHLTPDHRFKTRAEMAVLFAD 238 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLA 324 LPEAL +TVEIA+RCSF + PILP F +D E EL+ +A GL R+ Sbjct: 239 LPEALASTVEIAQRCSFRPKTRKPILPHFTVGSGHHEDPSAAEAAELQRQAQEGLAHRIE 298 Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + +A+G +DY RL FEL+VI RMK+ GYFLIV+DFI+WAK IPVGPGRGSGAGS Sbjct: 299 KHGLAEGQTEEDYYNRLAFELDVIKRMKYPGYFLIVSDFIKWAKAQGIPVGPGRGSGAGS 358 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 + AYALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR EVI YVQ +YG ++V Sbjct: 359 LVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIHYVQERYGRDQVG 418 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARL 503 QIITFG+LQA+ LRDVGR LQMPY QVD+L KL+P +PA PV+ AIA + + + R Sbjct: 419 QIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIAGEPKLQAFRD 478 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 DP V R +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVPMYRD +SD+PVTQFNMKW+ Sbjct: 479 EDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWV 538 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 E AGL+KFDFLGLKTLT+L ++ L QR V VDL+ +P DD ETY +LT +G+FQ+ Sbjct: 539 EPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHVDLAHLPLDDKETYEMLTRGDVVGVFQV 598 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GMR+AL M+PD EDIIALV+LYRPGP+ NI Y RK+G E+ +HP+++P+LK Sbjct: 599 ESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPVLEPILK 658 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ EM+KQ+ RF+SG+ ++ I+K Sbjct: 659 ETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRVRFVSGSVEHSITK 718 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HYPVEF+AASMTL+ N +K+ Sbjct: 719 GQAEQIFELLAKFADYGFNKSHAAAYALVSYQTAFMKAHYPVEFIAASMTLDTGNTDKLS 778 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862 +F +A++ I++ PPS+N F VG N I+YSLAA+KGVGT I+EA + PF Sbjct: 779 EFRAEAQRLGIKVEPPSINRSEGTFTVGGNTIFYSLAALKGVGTHAVDMIVEARKNGGPF 838 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL DF +RV + +N+RVLESL AGA D F +R + D I Q T Sbjct: 839 TSLADFAARVPPRAINKRVLESLAAAGAFDEFNPNRAAVFAGADAILAACQRSHDAVTLG 898 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F + G + + L + R + E +GF+ SGHPLD Y+ +L+++ ++ Sbjct: 899 QSDMFGSQSG--APTLILPNVEPWLPAERLQREYGAVGFFLSGHPLDDYRVVLQRLNVQS 956 Query: 983 YEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + E ++ ++AA VVS+ +++T+ G+++G + S+P +EA F Sbjct: 957 WAEFSNAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPTGHFEAVLF 1008 >gi|110636521|ref|YP_676728.1| DNA polymerase III subunit alpha [Cytophaga hutchinsonii ATCC 33406] gi|110279202|gb|ABG57388.1| DNA polymerase III, alpha subunit [Cytophaga hutchinsonii ATCC 33406] Length = 1194 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 338/1075 (31%), Positives = 551/1075 (51%), Gaps = 61/1075 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VHS +SLL+GA S+ ++ K ++ A+A+TD N+ +F +A I+ Sbjct: 2 PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC+ + ++D K N K +LL EGY+ LI+L S Y+ Q + Sbjct: 62 PIVGCEFYL-VEDRFKK-NFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKY 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + + +GLI T + R + EK + LFG+ YV LQR Sbjct: 120 PRIDKELILQYH-KGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQR 178 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ +++LA +++P++A+N+S ++ ++D AHD+L+ + S Sbjct: 179 HDIKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKD 238 Query: 248 VTPDHYLKNR--------SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE-- 297 + D + ++ + E I+ + + Sbjct: 239 FSDDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILL 298 Query: 298 --KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E +++N L++ G R + ++RLDFEL+ I M F+G Sbjct: 299 PNYEIPSTFLDQDNYLQHLTYEGARNRYVD-------VTPEIKERLDFELHTIRTMGFAG 351 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI ++ + +GPGRGS AGS AY + IT+IDP++++LLFERFLNPDR SM Sbjct: 352 YFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSM 411 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D DF + R +VI YV KYG ++VAQI+T+G++ AK +++DV R L +P + + L Sbjct: 412 PDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNAL 471 Query: 476 CKLIPNDPAHPVSLQA-------------------------IADDSRFR-EARLADPSVD 509 KL+P+ P ++ I + + R Sbjct: 472 AKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLAS 531 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +L+ + LEG R HAAGI+I + L ++P++ S+L VTQF+ K IE AG+I Sbjct: 532 DVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVI 591 Query: 570 KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGLKTLT+++ +L + + +K+D+ IP DD +T+ L T FQ ES+GM Sbjct: 592 KMDFLGLKTLTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFESAGM 651 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ L ++PD ED+IA+ +LYRPGPI+ I + RK GKE+IV P ++ L +T G+ Sbjct: 652 QKHLINLKPDKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGDTYGI 711 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 +YQEQVM ++Q L+G++ +ADVLR+AMGKK + +DK K +FI GA G+ + Sbjct: 712 TVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPKVCEK 771 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ FA Y FNKSH+ YA ++YQT ++K +YP E++A+ +T + N +KI F ++ Sbjct: 772 VWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISFFMEE 831 Query: 809 ARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866 ++ + ++ P VN F V + +I + + AIKGVG + I++ + PF Sbjct: 832 CQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPFKDFF 891 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQKYAQWVEK 917 DF SRV+ + ++++ ESL AGALD F R Q L+ +Y + Sbjct: 892 DFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGNAFQT 951 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + ++F + + + + E+ ++GFY SGHPLD +K + Sbjct: 952 EDDSNQSSLFGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKLEIDN 1011 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E +++ +G ++ +A +V ++++ G T + + + F Sbjct: 1012 FCNCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYSGSLDLALF 1066 >gi|297588670|ref|ZP_06947313.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC 53516] gi|297574043|gb|EFH92764.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC 53516] Length = 1161 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 368/1050 (35%), Positives = 585/1050 (55%), Gaps = 44/1050 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G + +LDK+ Q +IAITD ++F ++F ++ I+P Sbjct: 4 TFTHLHVHTEYSLLDGFSPIEKLLDKVEELQMKSIAITDHGSMFGTVKFYKECKKRNIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ +D+ + K +VLL GY L+++VS Y ++ Sbjct: 64 IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQTGYSNLMKIVSLGY-VEGFYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L++ +EG+I L+ G + + A+ K ++G+ Y+ LQ H Sbjct: 119 RVDKDTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + ++A ++ LV TN+ ++ +EDY+ H++L+ + + ++++ Sbjct: 178 SSREDMVVMENIPKIANELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEENKMSY 237 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L++ +M +F D PEA+ENT +IA C+ L+ LP F + Sbjct: 238 IPGEFFLRSEEQMRDLFKDYPEAIENTKKIAEMCNVELEFGNLHLPYFAIPDGF----TN 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ GLE R A ++ ++R ++EL+VI +M + YFLIV DFI++A Sbjct: 294 SSYLKKLVFDGLEKRFAND-----DRLEEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K +IPVGPGRGS AGS+ +Y L ITDI+PL ++L+FERFLNP+R+SMPD DIDFC +RR Sbjct: 349 KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYNLIFERFLNPERVSMPDIDIDFCYERR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M + VD K +PN + Sbjct: 409 EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +++ FR+A + V +L+++++++EG+ RH STHAAG+VI P+ + VP+ Sbjct: 469 D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + D +TQFNM +E+ GL+K DFLGL+TLT++ + ++ + + + V + +D Sbjct: 526 AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCMKYIKKNKDIDVSFEDMDENDP 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + + T TLGIFQ ES GMR L+ ++P +D+IA +L+RPGP++ I Y + K+ Sbjct: 586 KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 +E + + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK + M+ Sbjct: 646 NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705 Query: 727 KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++ F I GA + G+ + +A I++L+ FA Y FNKSH+AAY++++ Sbjct: 706 DGRKEFIFGKEDEDGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +TAW+K +YPVEFLAA ++ M N ++ + ++AR+ +I+I P +N F V DN Sbjct: 766 RTAWLKYYYPVEFLAALISSVMGNTSQLSLYIEEARRLDIKIEAPDINYSLDKFDVKDNS 825 Query: 835 IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I Y L AIK VGT I+ + + F S DF R+ D +N+R +ESL+ AGA Sbjct: 826 IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949 G +R L+ +I Q KN N+F E D+ + + S Sbjct: 886 FTSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNADDDRDDFTRREEFDKS 945 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003 E+ VLG Y S HPL Y I+ K + G +++ +V S Sbjct: 946 ELLRMEKEVLGIYLSDHPLRAYSNIIGKYSNFSTGDLEDDAYNEKNFDGKRVKVVGIVES 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+ + +V F + E FP Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035 >gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430] gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946] gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946] gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430] Length = 1160 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 417/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ A+ PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG ++ + + I +L + EGYQ L L+SR Y Sbjct: 60 QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E +GLI+L+GG G + + + + L +++ F DR Y+ Sbjct: 110 GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +P+VATN FL+E D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P YL++ EM +FSD+PEALEN+VEIARRC+ +++ + + Sbjct: 229 KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + E+ L ++ GLE RL + A+ DY QRLD ELNVI +M F GYFLI Sbjct: 284 GEMTTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM +Q+ F GA GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQ 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA + F L D C+R D+KK+NRR+LE L Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ +L + K A K ++F + + + Sbjct: 883 IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + E+ LG Y +GHP++ Y + + G + ++ T RG A +VV+ Sbjct: 943 PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|148239403|ref|YP_001224790.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7803] gi|147847942|emb|CAK23493.1| DNA polymerase III alpha subunit [Synechococcus sp. WH 7803] Length = 1173 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 390/1051 (37%), Positives = 582/1051 (55%), Gaps = 35/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ A PA+A+TD ++ A+E + AGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKALGMPALALTDHGVMYGAVELLKLCKGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I LQ+ +EGLI+ T G I +A VA ++++FGD Y+ Sbjct: 118 FSRACIDKHLLQQ-HSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + LVATN++ +L+ D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNVEIVKIAQELGIQLVATNDAHYLTSNDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T YLK+ EM +F+D P ++ + + ++ + + + + Sbjct: 237 RLRYTGTEYLKSEEEMGRLFADHLDPAVVQQAIANTVSVAEKVEDYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR GL RL G A G Y RL EL ++ +M F YFL+V D Sbjct: 297 EGHTPVTYLREVTEQGLRDRL--GLSADGTIEATYADRLSHELQIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG E+VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + + F+E DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGDESPNPDFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ +AQ ++D Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D T+ LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDQLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS+ G+ + +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVKGASERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF D RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRDQRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ + AD PF+SL D C RV S +NRR LESL+ GA+D Sbjct: 834 LFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAMDAL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942 +R QL+ LD + +A ++R + N+F S Sbjct: 894 EPEANRAQLIADLDLLLDWATSRARDRASGQGNLFDLMAGAAGGEADAPTDLSLAPKAAP 953 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + S + + E+ ++GFY S HPL P R + G + AMV Sbjct: 954 VKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLGGLEEQADKAKVSAIAMVS 1013 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 EMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044 >gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp. R11] Length = 1170 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 492/1061 (46%), Positives = 683/1061 (64%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ H+ YSLLEGA+ L + D + PAIA+TD+NNLF+ALEFS A Sbjct: 1 MTQNPRFIHLRTHTEYSLLEGAVRLKKLPDLCKKYEMPAIAVTDSNNLFAALEFSVSASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ D G+ P P P +VLL + GY+ L++L S +Y+ + Sbjct: 61 AGVQPIMGCQVDLRFTD----PAPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L L + + +I L+GG GP+ R AE + K +F DRLYV Sbjct: 116 S-ELAHVTLEELAQYAGD-VICLSGGPDGPVGRLLQMGQRSAAEALMQRLKAIFPDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G ++ E +++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEHGQPEAEQLTERGHIEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEALENTVEIA+RC+F+ + Sbjct: 234 YVDQVEPRRRLTAQHYFKSQEEMVALFADLPEALENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ ++ ++ R RE + VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIADSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HIAADGTQLYDPPEGAENQINAIPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++ Y+L AD+LRRAMGKKIKE MD ++ +F GA++NG+ A +F+LL KFA+ Sbjct: 704 AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873 PP VN F V + Y+L A+K VG R + A DKPF +L DF RVD Sbjct: 824 PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE +V AGA D +R ++ +SL + Y+ +++ + + ++F E G Sbjct: 884 LKKVGKRPLEMMVRAGAFDQLDSNRRRVFESLGALVDYSAAIQEQKNSNQVSLFG-EAGE 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y P L++ + +E A Sbjct: 943 DLPEPRLPNVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002 Query: 994 N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTLGAYEVTLF 1043 >gi|126696251|ref|YP_001091137.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9301] gi|126543294|gb|ABO17536.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9301] Length = 1165 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 381/1044 (36%), Positives = 596/1044 (57%), Gaps = 28/1044 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQISKIVDRACDLGMESIALTDHGVMYGVLDLVKKCKEKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L GY+ L++L + +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I S L + ++GLI+ T G I +A VAE L +KKLF D Y+ Sbjct: 118 FSRPCIDKSLLSKY-SDGLIISTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + Sbjct: 177 IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ +EM+ +F D + ++ V S ++V + K + Sbjct: 237 RLRYTGTEYIKSENEMLELFKDHIDDESIIEAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + GL RL + + ++Y++RL EL +I M F YFL+V D Sbjct: 297 EDTDSFSFLTQLSNKGLLKRLKKNDLT--EVDENYKKRLSSELKIIKDMGFPDYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SMPD D DF Sbjct: 355 YIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 415 CIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVV 474 Query: 483 PAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L + D FR+ + D V + ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVIASDP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L +LVP+ R+ +TQ++M IE GL+K DFLGLK LT+++K++ + Q G K++ Sbjct: 535 LDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTGRKIN 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 594 IDELPQNDGKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRKNG EKI HP I +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMVKHRNIFVDGSRKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF + +N+I Sbjct: 774 TAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQI 833 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+AIK +G + R+I+E F SL D C R+ S LN+R LESL+ GALD F Sbjct: 834 LFGLSAIKNLGDSAIRNIIENRNSFGTFKSLSDLCDRLPSNILNKRSLESLIHCGALDEF 893 Query: 895 --GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSS 949 +R QLL L+++ ++A ++R + N+F L K + Sbjct: 894 SKDNNRAQLLSDLEHVVEWASSRNRDRLSGQGNLFDSKDEFSNVAFSDSQLAKVDDYSLI 953 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + + E+++LGFY S HPL + + + + L M+ +Q T Sbjct: 954 EKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISISQLEEIKDRTKVSLVGMIPDLKQITT 1013 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 RKG R+ V + + EA FP Sbjct: 1014 RKGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1173 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 412/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A+ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRTNDEEHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R + Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV+ Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 598 -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++R + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185] gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185] Length = 1157 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G + +A +S E ++ F DR ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSRKGLEERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT] gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT] Length = 1158 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 418/1046 (39%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS +S++ G + ++ + A+A+TD N + F +A ++G Sbjct: 2 SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + + + + LL EGY + L+S+ Y Sbjct: 62 VKPIIGADVLV----------KSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I SWL E EG+I+L+GG +G + + N+S E + +++ F D Y++L Sbjct: 111 NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R + LA +LPLVATN+ FLS ED+EAH++ +A+ + R Sbjct: 170 SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + Y ++ EM +F+D+P ALENTV IA+RC+ +++ + Sbjct: 230 PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYF-----LPKFPTGD 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + ++Y RL EL+VI +M F GYFLIV Sbjct: 285 LSPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNPDR+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + R E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTLT-KAFEVEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP +D ++++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP++ Sbjct: 584 DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643 Query: 657 NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 644 SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q++ F GA GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + + I+PP +NT F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+ A F L D C+RVD KK+NRR E+L+ Sbjct: 824 VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L Q+L++ K + K+ ++F + D + Sbjct: 884 SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LG Y S HP+ Y L E RG + ++V+ + Sbjct: 944 SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+R+G T + + + F Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029 >gi|269792442|ref|YP_003317346.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100077|gb|ACZ19064.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1132 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 388/1032 (37%), Positives = 599/1032 (58%), Gaps = 32/1032 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA+ ++D +A+ A+AITD ++ EF +K A GI+PI Sbjct: 5 FVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ +D +G+ +VL GY+ LI+LVS D R Sbjct: 65 IGCEVYVDPNGMDSRDGKGRNN-----HLVLWAEDQVGYKNLIKLVSIANT-DGFYYKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + L + ++G+I + +G I + A R ++ +FG+ ++ + + Sbjct: 119 VDHRVLSQ-HSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEIMYN 177 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++ +++++LA LPL+ATN++ +L ED HDVL+ V ++ V DR R Sbjct: 178 QLPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDRYRF 237 Query: 249 TPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D + + ++PEAL NT+ +A RC+ LQ+ +LP F E + Sbjct: 238 GSDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R+ + Q+YR RL++EL VI +M F GYF IVAD I Sbjct: 294 LDSHLEKMAREGLRARVGEP------IPQEYRDRLEYELGVIKQMGFPGYFCIVADIITA 347 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IP+GPGRGS AGS+ A+ L IT++DP+++ LLFERFLNP+R+SMPD D D R Sbjct: 348 AKSRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVSDKR 407 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV+ Y+ KYG +RV+QIITF +++KAA+RDVGRAL MPY +VDR+ KL+P Sbjct: 408 RDEVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLVP--DGVK 465 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ +E +DP V RL++ + +EG+ RH S HAAG+VI PL ++VP+ Sbjct: 466 SLKEALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMVPVR 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 + + VTQ++M+ +E GL+K DFLGL+TL++++ +L A RG+K+DL IP DD Sbjct: 526 KIG-ENQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLKIDLRAIPLDD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T+ +L TLG+FQLESSGM+ L ++PDC ED+IA+++LYRPGP+ + + Y Sbjct: 585 PKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDDYIE 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G+ + HP ++ LKET GVI+YQEQVMQ A L+GY+L EAD+LRRAMGKK + Sbjct: 645 RKHGRSPVTYPHPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAMGKKKAD 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M+KQ+ +F+ GA G+ +A +IF + KFA+YGFNKSH+AAYA+ISYQTA++K HY Sbjct: 705 VMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTAYLKAHY 764 Query: 784 PVEF-LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 EF + ++ ++ + ++ ++ R ++PP +N DF I L+A+ Sbjct: 765 GPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGEVIRLGLSAV 824 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG + I+ A ++ PF S DF RVD + +NR V+E+L+ AGA D +R LL Sbjct: 825 AKVGDSAVDAILRARSEGPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVLCPNRRMLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 +L+ + + AQ + +K ++F ++ + ++ + R E E+ VLG Y Sbjct: 885 DNLEGLLEMAQ--RRCDPSKQVSLFDGDEEEEE-EPKMDVVDDVDIHQRLEWEREVLGLY 941 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHP + + L + + + N + A ++ +++ T++G +G + Sbjct: 942 ISGHPFEQVEGELAPFLVCKISDLRSWRSSNVAPVTAGLLAGIRERYTKRGDPMGILEME 1001 Query: 1022 EPAKEYEANFFP 1033 + + EA FP Sbjct: 1002 DGDDKVEAVCFP 1013 >gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1173 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+++ D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVD 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|254525897|ref|ZP_05137949.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus marinus str. MIT 9202] gi|221537321|gb|EEE39774.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus marinus str. MIT 9202] Length = 1165 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 377/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K I+PI Sbjct: 3 FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ + + +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I S L + ++GLI+ T G I +A VAE + +KK+F D Y+ + Sbjct: 119 SRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFADDFYLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + R Sbjct: 178 QDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T Y+K+ +EM+ +F D + ++ V S ++V + K + Sbjct: 238 LRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLNE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + L + GL RL + + Y++RL EL +I M F YFL+V D+ Sbjct: 298 DTDSFSLLTKLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP R SMPD D DFC Sbjct: 356 IKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475 Query: 484 AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + D FR+ + D V + ++++ ++EG + HAAG+VI PL Sbjct: 476 GKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLAMRIEGTNKTYGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 +LVP+ R+ +TQ++M IE GL+K DFLGLK LT++ K++ + Q G +++ Sbjct: 536 DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLINQSTGKIINI 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 595 DDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + F++G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMVKHRNIFVNGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K H+PV ++AA +++ + +K++++ + I+++ PS+N VDF + +N+I Sbjct: 775 AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQIL 834 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894 + L+AIK +G + R+I+E F+SL D C R+ S LN+R LESL+ GALD F Sbjct: 835 FGLSAIKNLGDSAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGALDEFS 894 Query: 895 -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSV 950 +R QLL L+++ +A ++R + N+F ++ + L+K + Sbjct: 895 NDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDDYSLIE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+++LGFY S HPL + + + T + L M+ +Q TR Sbjct: 955 KLKLEKQLLGFYLSDHPLKHLAKQAKLISPINISQLEETKDRTKVSLVVMIPDLKQITTR 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG R+ V + + EA FP Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1173 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|94986701|ref|YP_594634.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis PHE/MN1-00] gi|94730950|emb|CAJ54313.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis PHE/MN1-00] Length = 1169 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 418/1049 (39%), Positives = 613/1049 (58%), Gaps = 36/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL HS YSLL+GA+ L+ + + PA A+TD NLF+A F Sbjct: 1 MSN---FVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKE 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + K++ K ++LL EGY L++LV+R YL D Sbjct: 58 YGIKPIIGCEVYVTKDHADKLSKFSKAR----HHLILLARNKEGYHNLVKLVTRGYL-DG 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--------SQVAEKRLLTFKK 176 R+ + L++ + G+ L+ +G + R + A + Sbjct: 113 FHYKPRVDKTLLKQFSS-GITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYAS 171 Query: 177 LFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 ++ + Y+ +Q + ++ ++ +LA LPLVATN+ +L+ +D EAHD+L+ V Sbjct: 172 IYPGQFYLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQ 231 Query: 236 HSTVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + DR R EM FS LP A+ENT++IA CS + + P Sbjct: 232 TQAKFNDTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPV 291 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++E R A GL+ RL K ++Y +RL+ EL++I +M F Sbjct: 292 YELPKGV----TPDDEFRRLAREGLQKRLEVYPNKKQLTTENYWKRLEQELDIICKMGFP 347 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI WAK NNIPVGPGRGS GS+ A+AL IT+IDPL ++LLFERFLN +R+S Sbjct: 348 GYFLIVQDFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERIS 407 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 +PD D+DFC+D+R +VIRYV NKYG VAQI TFG ++AKA +RD+GR L M + + D Sbjct: 408 LPDIDVDFCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDN 467 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + KLIP+D + +A+ + + + +P + RLL+IS KLEGL RHASTHAAG+V+ Sbjct: 468 IAKLIPDDLHMTIL-KAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVV 526 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593 D+P+ + +P+YR + VTQF+MK +EK GL+KFDFLGL+T+TL+ +L + + Sbjct: 527 SDKPMDEYLPLYRG-KKGELVTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQGK 585 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + +L +P DD +TY LL+ T G+FQ+ESSGMRQ L ++P+C ED+IA+++LYRPG Sbjct: 586 IPPNLDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPG 645 Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + RK+G I P + LK+T GVI+YQEQVMQIAQ+++GYSL EAD Sbjct: 646 PLGSGMVDEFIKRKHGTVTIEYPLPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK E M K++ RF+ GA KN ++++IA +IF+L+ KFA+YGFNKSH+AAYA+ Sbjct: 706 LLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISY TA++K H+ +EF+AA +T E N KI K+ + I I+ P + T C +F V Sbjct: 766 ISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREFIVK 825 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 DN I + L AIK VG I+ D PF SL D RV+ KK+ RRVLESLV GA Sbjct: 826 DNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKGGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKF 943 D FG SR +L +LD I K+ + ++ A S + + Sbjct: 886 CDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQNM 945 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LGF+ + HPL Y+ + ++G++ EE I+ A +V + Sbjct: 946 PEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYRLGLQPLEEVREMNDKITIKSAIIVNN 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++G+R+ +V + E FF Sbjct: 1006 IREILNKRGNRMAFVRVEDLTASAEVTFF 1034 >gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1173 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EDPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336] gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336] Length = 1158 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 416/1046 (39%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS +S++ G + ++ + A+A+TD N + F +A ++G Sbjct: 2 SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + + + + LL EGY + L+S+ Y Sbjct: 62 VKPIIGADVLV----------KSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I SWL E EG+I+L+GG +G + + N+S E + +++ F D Y++L Sbjct: 111 NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R + LA +LPLVATN+ FLS ED+EAH++ +A+ + R Sbjct: 170 SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + Y ++ EM +F+D+P ALENTV IA+RC+ +++ + Sbjct: 230 PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYF-----LPKFPTGD 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L K+ GLE RL + ++Y RL EL+VI +M F GYFLIV Sbjct: 285 LSPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D+RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 405 FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP ++ +A + R E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTLT-KAFEAEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R V Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP +D ++++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP++ Sbjct: 584 DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643 Query: 657 NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 644 SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q++ F GA GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + + I+PP +NT F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN I Y + AIKGVG I+ A F L D C+RVD K++NRR E+L+ Sbjct: 824 VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L Q+L++ K + K+ ++F + D + Sbjct: 884 SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LG Y S HP+ Y L E RG + ++V+ + Sbjct: 944 SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+R+G T + + + F Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029 >gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] Length = 1154 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F +R Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155] gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155] Length = 1157 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 411/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGVKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G + +A +S E ++ F DR ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKHEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|227497604|ref|ZP_03927825.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226832930|gb|EEH65313.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 1197 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 356/1074 (33%), Positives = 566/1074 (52%), Gaps = 54/1074 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 K FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF + A A Sbjct: 11 AKKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYEAARKA 70 Query: 66 GIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PI+G + + T + + + LL EG L+ Sbjct: 71 GIKPIVGVEAYMTPGTSRFDKTRVFWGEESQRSDDVSARGSYTHMTLLSRNDEGLHNLMR 130 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S L Q +S R+ LQ + GLI +G S I + A + Sbjct: 131 LDSYASLEGQWGKSPRMDRELLQRYAS-GLIGTSGCPSSEIQTRLRLGQWEEALRCAGEL 189 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG + YV L H ++ +++LA PL+ATN+S ++ ED D ++ Sbjct: 190 QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAKEIGAPLLATNDSHYVRPEDRTIQDAML 249 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + +V+S DR + D Y EM +F ++P+A +NT+ +A +C Sbjct: 250 CINSGSVLSDPDRFKFDGDTYYLRPGREMRELFREMPQACDNTLLVAEQCDVHFATVD-E 308 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 F+ + E+ + G++ R G +D R++ ++E+ VI +M Sbjct: 309 GASFMPAFPVPEGETMESWFIKECWKGMDKRFG------GNIPEDCRKQAEYEIGVIVQM 362 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PL+ L+FERFLNP+ Sbjct: 363 GFPGYFLVVADYINWAKNHGIRVGPGRGSGAGSMVAYAMGITELNPLQHGLIFERFLNPE 422 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD D+DF + RR+EVI YV+ KYG ++++Q++T+G ++AK +L+D R + PY+ Sbjct: 423 RISMPDIDVDFDERRREEVIDYVKAKYGADKISQVVTYGVIKAKQSLKDSSRVMGYPYAV 482 Query: 472 VDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P ++++ I + + FR DP +++E++Q LEG+ Sbjct: 483 GDRLTKAMPPTIMGKDITIKGIFNPEDERYGEAAEFRALHAEDPDAQKIVELAQGLEGMT 542 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ LT++ Sbjct: 543 RQWGVHACAVIMSSATLTDIIPMMQRLQDGAYITQFDYPTCEHLGLLKMDFLGLRNLTVI 602 Query: 583 QKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L+ + G + D+ + DD ETY LL+ TLG+FQL+ GMR L M+PD E Sbjct: 603 SDALENIVANGKEPLDIDHVALDDAETYQLLSRGETLGVFQLDGGGMRTLLRLMKPDNFE 662 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695 DI A+ +LYRPGP+ ++ Y RKNG+++I IHP ++P+L T G+I+YQEQV Sbjct: 663 DISAVGALYRPGPMGAESHTNYALRKNGQQEITPIHPELKEALEPILGNTYGLIVYQEQV 722 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M+IA L+G+++ +AD LR+AMGKK + + K F +G NG SK +++++ Sbjct: 723 MKIATDLAGFTMGKADALRKAMGKKKMDILAKMFVEFEAGMVANGFSKESVKTLWDVVVP 782 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY V+SY TA++KTHYP E++AA +T + DN +K+ + + R I+ Sbjct: 783 FAKYAFNKAHSAAYGVVSYWTAYLKTHYPTEYMAALLTSQKDNKDKLALYLGECRHMGIK 842 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874 ++PP VN F + I + L AI+ VG I+ A + F S EDF +V + Sbjct: 843 VLPPDVNASRAQFSAVGSDIRFGLGAIRNVGANVVDGIVAAREEQGDFTSFEDFLDKVPA 902 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N+R ++SL+ AGA D G SR L ++ V++N ++FA G Sbjct: 903 VVCNKRTIDSLIKAGAFDSLGKSRRSLQACHEDFVDEIIGVKRNEAVGQFDLFASLGGGD 962 Query: 935 SDKI------------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + + + E+ +LG Y S HPL + +L K+ Sbjct: 963 QASEDPAFGSGPVFSSEVPDLPEWDKKDKLAFERDMLGLYVSDHPLLGLEGMLSKLADVE 1022 Query: 983 YEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G + +A ++ S Q+K T++G+ + EA FFP Sbjct: 1023 IADLLENEERPDGAMVTVAGLITSLQRKTTKQGNLWAIAQVEDLGGTVEALFFP 1076 >gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1173 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+++ D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVD 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSYDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3] Length = 1140 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 579/1022 (56%), Positives = 746/1022 (72%), Gaps = 8/1022 (0%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 HS+YSLLEGAL + I +D PAIAITDTNNLF ALEFSQ GIQPIIGCQL Sbjct: 2 HSAYSLLEGALKIKQITQHAISDNMPAIAITDTNNLFGALEFSQSCFIDGIQPIIGCQLA 61 Query: 77 IDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 ID D ++ K + S I+L ++ GY L++LVSR YL I W Sbjct: 62 IDFGDENCNSSLAKLRHSSDFSSIILFAASEIGYANLVQLVSRAYLDKSDVDCPHIKADW 121 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195 L +G+I LTGG SGPI+ A + + A KRL KK+F DRLYV LQR+ YD+ Sbjct: 122 LL-THHKGIIALTGGPSGPINLALAEDRKERAVKRLTYLKKIFSDRLYVELQRYSSYDQK 180 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255 E+ +V+LAYT+ELPLVATN + FL++E YEAHD LMAVA VVS DR RVTP+HYLK Sbjct: 181 VEAALVELAYTYELPLVATNEAFFLNKEGYEAHDALMAVAEGQVVSNPDRKRVTPEHYLK 240 Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRN 313 ++ EMVS+FSDLPEALEN+VEIA RC + PILPRFIE D + + E EL + Sbjct: 241 SQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIESSADLSSVLEAEAKELLD 300 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 +A +GL++RL +A+GY DY QRL++E+++I RM+FSGYFLIV+DFI+WAK ++IP Sbjct: 301 QAESGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIKWAKAHDIP 360 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY Sbjct: 361 VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQERREEVIRY 420 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAI 492 VQ KYG +VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P P V +AI Sbjct: 421 VQEKYGCNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGSNVELAKAI 480 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 D+ +F E + DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD Sbjct: 481 IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612 +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +D TY ++ Sbjct: 541 MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSCIPLNDEVTYAMM 600 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI YN RK+ +E+I Sbjct: 601 SRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIATYNIRKHKEEEIT 660 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF Sbjct: 661 SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRTRF 720 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 +SGA GI K A IF+LLAKFADYGFNKSHA AYA++SYQTA+MK H+PVEFLAASM Sbjct: 721 VSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYQTAYMKAHHPVEFLAASM 780 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852 T +M N +K+ F ++A + I+++ P V T F+VG+N IYYSL+A+KGVG H Sbjct: 781 TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840 Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 I+ DKPF LEDFC R+D + +N+R +ESL++AGA DCF +R LL SL + A Sbjct: 841 IVARRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNIAREVLLASLATLNARA 900 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + N ++ +IF G I L + S +S+ + +E + +GFYFS HPL Y+ Sbjct: 901 LRILDNNSSGQIDIFGMIGGLKEPLI-LSQVSPWSSAEKLYHEFQTIGFYFSAHPLSEYQ 959 Query: 973 PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L K ++ + + +I+G RLA VV+KQ +K R G ++G + FS+ + +YEA Sbjct: 960 DVLIKKRVQTWSDFATSIKGGATAARLAGTVVAKQIRKIRSGKKMGIIQFSDTSGQYEAV 1019 Query: 1031 FF 1032 F Sbjct: 1020 IF 1021 >gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato K40] gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] Length = 1173 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+++ D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1] Length = 1148 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 486/1033 (47%), Positives = 681/1033 (65%), Gaps = 19/1033 (1%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 FVHL+V S+YSLLEGA+ + I D A PA+A+ D NLF ALEFS + Sbjct: 8 TADAGFVHLRVRSAYSLLEGAIKADKIGDLAKAWGMPAVALADRANLFGALEFSVATKGS 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G+QPIIGC L + + ++ + P+I+LL + +GY L EL S YL Sbjct: 68 GVQPIIGCALPVS-----GIGDRPPERWAKTPTIMLLAQSEQGYLNLCELSSAAYLDVDA 122 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + + + E +EGLI+L+GG GP+D F + L K+ FG R YV Sbjct: 123 SEEPHVPWTKVVER-SEGLILLSGGPDGPVDHLFAAGKVKEGRAALAEMKRAFGSRFYVE 181 Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 LQRH + E ++V AY ++PLVATN+ F + + ++AHD L+ +A + V Q + Sbjct: 182 LQRHGLPAEAAAEGELVAFAYDEDVPLVATNDVYFKNPQMHQAHDALLCIADGSFVGQDE 241 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R RVT +H+ K+ ++M ++F+DLPEA +NT++IARRC+F++ + D Sbjct: 242 RRRVTAEHWFKSPADMRALFADLPEACDNTLDIARRCAFMV-----HKRDPLLPSFTDEG 296 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E EL ++A GL R+A G A + A++Y RL+ E+ VI +M F GYFLIV+DFI Sbjct: 297 RSEAEELAHQAREGLRARMAAGQ-ANAFPAEEYEARLEREIQVITQMGFPGYFLIVSDFI 355 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +WAK IPVGPGRGSGAGS+ AYALTIT++DPLR+ LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 356 KWAKARGIPVGPGRGSGAGSLVAYALTITNLDPLRYGLLFERFLNPERVSMPDFDIDFCQ 415 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI YVQ +YG ++VAQIITFG+LQA+A LRDVGR +Q+P QVDRL K++P +PA Sbjct: 416 ERREEVINYVQQRYGRDKVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLAKMVPANPA 475 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +PV+ QA+ + R +E D +V RLL+++ +LEGLYR+ASTHAAG+VIGDRPL+QL Sbjct: 476 NPVTLAQALDIEPRLKEEAARDEAVARLLDVALQLEGLYRNASTHAAGVVIGDRPLTQLT 535 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+YRD RS+LP TQFNMKW+E AGL+KFDFLGLKTLT++ +++ L +RG VD++ +P Sbjct: 536 PLYRDPRSELPATQFNMKWVESAGLVKFDFLGLKTLTVIDRAVKHLEKRGAAVDMNALPL 595 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY L++ T+G+FQLE GMR L ++P IED+ A+VSLYRPGP+DNI + + Sbjct: 596 DDGPTYELMSNAQTIGVFQLEGQGMRDTLRQLRPSSIEDVTAIVSLYRPGPMDNIPAFVD 655 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K G++ I ++HPL++ +LKET G+I+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KE Sbjct: 656 CKFGRKPIDTLHPLLEGVLKETYGIIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKE 715 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM+ Q+ RF+SGA G+ + IF+L+ KFA YGFNKSHAAAYAV+SYQTAW+K + Sbjct: 716 EMEAQRARFVSGAEAKGVPAAQSGAIFDLVDKFAGYGFNKSHAAAYAVVSYQTAWLKANA 775 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 PVEF AASM+L++ N +K+ F QDA++F ++I PP VN DF+V + + Y+L AI+ Sbjct: 776 PVEFFAASMSLDIANTDKLSVFYQDAKRFGVKIRPPCVNRSGADFEVENGEVLYALGAIR 835 Query: 844 GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG H+++ PF + DF R+D K++N+R E+L AGA D +R +LL Sbjct: 836 NVGLQAMEHVVQVRREGGPFRDIFDFVERIDPKQVNKRTFETLARAGAFDAIHPNRAELL 895 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 S D + + Q + +R ++F + + + L + + R + E +GFY Sbjct: 896 ASADTLVGHGQALAADRAEGKVSLFGDDL-SGGHRPRLTRAEPWTPTERLDEELAAVGFY 954 Query: 963 FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD LR+ + + G R+A ++ KQ++ +R G + +VTF Sbjct: 955 LSGHPLDDMVEALRRKRTDLLTDAIARAVAGAEALRMAGVIRRKQERPSRTGEKFAFVTF 1014 Query: 1021 SEPAKEYEANFFP 1033 S+P EYE FP Sbjct: 1015 SDPTGEYEV-LFP 1026 >gi|319897758|ref|YP_004135955.1| DNA polymerase iii alpha subunit [Haemophilus influenzae F3031] gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031] Length = 1159 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 400/1048 (38%), Positives = 594/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|119477117|ref|ZP_01617353.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2143] gi|119449480|gb|EAW30718.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2143] Length = 1207 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 408/1078 (37%), Positives = 592/1078 (54%), Gaps = 69/1078 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL++HS +SL++G + + ++ K+A PA+A+TD N ++ ++F + A AAGI+P Sbjct: 4 SFVHLRLHSEFSLVDGLVRIKPLVQKVADAGMPAVALTDHCNFYALIKFYKAAMAAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC + T +V + LL ++GY+ L EL+SR Y Q Sbjct: 64 ILGCDFHVVDD----------TDETSVSHLTLLAQNSKGYRNLTELISRAYQDGQYLGRP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I SWL E TEG+I L GG G + N +A RL ++ LF Y+ LQR Sbjct: 114 YIKQSWLTEY-TEGVIALGGGRQGDVGMLLVSNKLDLARTRLASYMSLFPGSFYMELQRT 172 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 ++ + V LA + P+VATN FL DYEAH+ + + + R R Sbjct: 173 GRQHEEDYLHKAVTLATELDCPVVATNEVCFLKTGDYEAHETRVCIHEGRALDDPRRSRN 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI---- 303 + YL+ EM +FSD+PEAL NTVEIA+RCS +++ LP + + + Sbjct: 233 YSEQQYLRTPEEMAELFSDIPEALINTVEIAKRCSAEIELGEIYLPEYPIPDDYEKDAFF 292 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---------------------------- 335 Q E + L+ + L + + Y + Sbjct: 293 QHEPYDGLKAQTEKSLAAKWVGKEATEDYAKELRTGIFFRKISIEGLNDRLAFLFGDDAI 352 Query: 336 ----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 +YR RLDFEL++I M F GYFLIV DFIQWAK + IPVGPGRGSGAGS+ AYA Sbjct: 353 SHIKEYRDRLDFELDIILEMGFPGYFLIVMDFIQWAKDHEIPVGPGRGSGAGSLVAYAQK 412 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D RD+VI YV + YG + V+QIITFG+ Sbjct: 413 ITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDNRDKVISYVADNYGRDAVSQIITFGT 472 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511 + AKA +RDV RA Y D+L K+IP + + +A + R+ D + Sbjct: 473 MAAKAVIRDVARAQGKSYGLADKLSKMIPFEVGMTLE-KAFEQEDILRDFLRDDEQAQEI 531 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 +++ +LEG+ R+ HA G+VI L+ P+Y D VTQF+ +E+AGL+KF Sbjct: 532 WDMAVQLEGITRNVGKHAGGVVIAPSKLTDFSPLYCDDSGGGLVTQFDKNDVEEAGLVKF 591 Query: 572 DFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 DFLGL+TLT++ ++ + + +++ IP DD +Y LL T +FQLES Sbjct: 592 DFLGLRTLTIIDWAVKMINRPKDDGSSPNLEIERIPLDDRASYQLLKRAETTAVFQLESR 651 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLID 679 GM+ ++ +QPD +ED+IALV+L+RPGP+D+ +V + + H + Sbjct: 652 GMKDLIKRLQPDNLEDMIALVALFRPGPLDSGMVDDFVNRKHGRAEVAYPDAKYQHEWLK 711 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 P+L+ T GVI+YQEQVMQIAQ L+GYSL ADVLRRAMGKK EEM +Q+ F GA Sbjct: 712 PILEPTYGVIVYQEQVMQIAQELAGYSLGGADVLRRAMGKKNAEEMARQRTSFEDGAKAK 771 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQTAW+KTHYP EF+AA+M+ E+ N Sbjct: 772 GVDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHYPAEFMAATMSSELQNT 831 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS- 857 +KI F ++ R + P VN F V + I Y L AIKG+G ++++ Sbjct: 832 DKIVIFIEECRAMKLDYRLPDVNEGEYMFTVNKEGAIVYGLGAIKGLGEGPIENMIKTRD 891 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 PF SL DFC R D +K+N+R +++L+ +G+ D G R LL ++ K A+ Sbjct: 892 ESGPFTSLFDFCERTDPRKVNKRAIDALIRSGSFDTLGVERAILLAAMPEAVKAAEQSAG 951 Query: 918 NRTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 NR ++F + + + E+ LG Y +GHP+D Y+ Sbjct: 952 NRDAGMMDLFGDVVSADEHGDVYSDYQNVRPLSPKEKLGGEKDTLGLYVTGHPIDEYEKE 1011 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LR+ + A +A +VV + K ++G + +VT + + E +FF Sbjct: 1012 LRQFVRNRIVDLKADFNNQ--TMAGLVVGLRTMKNKRGDTMAFVTLDDRSARIEISFF 1067 >gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium HTCC2654] Length = 1171 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 497/1062 (46%), Positives = 685/1062 (64%), Gaps = 52/1062 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+VH+ YSLLEGA+ + + + PA+A+TDTNN+F ALEFS A Sbjct: 1 MAATPRFIHLRVHTEYSLLEGAVPVKKLAGLCESMDMPAVAVTDTNNMFCALEFSVTASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+ + G+ P P P +VLL GY+ L++L S +YL D+ Sbjct: 61 AGVQPIIGCQVTVA----FDTPEPGEQPRPGAP-VVLLAQNEGGYENLMKLNSCLYL-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L+ L++ + GLI LTGG+ GP+ + A++ + F ++F DRLYV Sbjct: 115 HGALPEVTLAELEQY-SAGLICLTGGAEGPVGHWLQQGNRAKAQELMTWFHRVFADRLYV 173 Query: 185 NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G ++ E V++AY +PLVATN+ F + YEAHD L+ +A Sbjct: 174 ELQRHPGEGGQLTEPEQKTERGFVEMAYAMGIPLVATNDVYFPKTQLYEAHDALICIAEG 233 Query: 238 TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 Q+ R +TP HY K+ EM ++F+DLPEA+ENTVEIARRC+F+ Sbjct: 234 AYVDQQEPRRHLTPQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAY--------RR 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E +ELR +A GLE RLA I ++Y RL+FEL +I M F GY Sbjct: 286 DPILPKFADDEVDELRRQAKEGLEARLA--VIPHAAPVEEYEARLEFELGIIEGMGFPGY 343 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W+K N IP+GPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP Sbjct: 344 FLIVADFIKWSKDNGIPIGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 403 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+E IRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL Sbjct: 404 DFDIDFCMDRREETIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP + PVS+ + D+ R RE A+ V+RLL ++++EGL R+ASTHAAG+VIG Sbjct: 464 KLIPVEGVKPVSITQALKDEPRLREEARAEEVVERLLRYAEQVEGLLRNASTHAAGVVIG 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590 DRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Sbjct: 524 DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLIHGQGRD 583 Query: 591 -------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 G + ++LIP DD +TY L + T+ +FQ+ES+GM AL M+P Sbjct: 584 LHIGPDGAEIYTPAEGGENQINLIPLDDEKTYRLYASAKTVAVFQVESTGMMDALRRMKP 643 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQ Sbjct: 644 TCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVHPLIDHILEETQGIIVYQEQVMQ 703 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL AD+LRRAMGKKIKE MD ++ +F GA++ G+ K A +F+LL KFA Sbjct: 704 IAQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAEKGVDKKKASEVFDLLEKFA 763 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ +I+I Sbjct: 764 NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYAEEVRRGLDIEI 823 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRV 872 +PP VN F V + R+ Y + A+K VG + I+EA +KPF +L D RV Sbjct: 824 VPPCVNRSEAMFCVSEGRVVYGIGALKNVGVEAMKLIVEARKVEGREKPFVNLYDVARRV 883 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K++ +R +E L AGA D +R ++ +SLD + Y+ + + R + ++F E G Sbjct: 884 DLKRVGKRPMEMLARAGAFDELDANRRRVFESLDALVSYSAAIHEQRDSAQVSLFG-EAG 942 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + L + R E + +GFY SGHPLD Y L++ G+ EE + Sbjct: 943 DDLPEPRLSNAPDWLPNERLAEEHKAIGFYLSGHPLDDYMAALKRKGVVTLEELTKKVER 1002 Query: 993 NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A V +KQ++K+ KG+R +V ++P E F Sbjct: 1003 APCVAKIAGAVSAKQERKSAKGNRFAFVAMTDPTGACEITVF 1044 >gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1173 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+++ D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae bacterium KLH11] Length = 1166 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 491/1057 (46%), Positives = 682/1057 (64%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ L + + PA+A+TDTN++FSALEFS A Sbjct: 1 MSSIPRFIHLRVHTEYSLLEGAVRLKKLPGLCEQMEMPAVAVTDTNSMFSALEFSVAASG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P +VLL + GY+ L++L S +Y +D+ Sbjct: 61 AGVQPIMGCQVDLTY----VQAQPGEKPKAPAP-LVLLAQSELGYENLMKLSSCLY-VDK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L + ++GLI LTGG GP+ AE + +F DRLY+ Sbjct: 115 GGQLPQVTLEELADR-SDGLICLTGGPDGPVGHLLQQGQRPAAEALVDRLAGMFPDRLYM 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY +LPLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPEAERLTERGHVEMAYAKDLPLVATNDVYFPTSDMYEAHDALICIAEGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQQEGRRRLTAQHYFKSQQEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQKRLA--VIPHAVTPEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDEDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R R+ ++ V+RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALKDEPRLRDEARSEEVVERLLTYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDL 583 Query: 597 DLSLI------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ P DD TY L + T+ +FQ+ESSGM AL+ M+PD Sbjct: 584 HIAPDGTELYEPADGAVNQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPD 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDIIALV+LYRPGP++NI + KN + ++HP ID +L ETQG+I+YQEQVMQI Sbjct: 644 CIEDIIALVALYRPGPMENIPKFCEVKNKLSQRDTLHPSIDHILDETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKKI+E MD ++ +F+ GA++N + + A ++ LL KFA+ Sbjct: 704 AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFLKGAAENDVDEAKATEVWNLLDKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ R+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLDLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D + Y+L A+K VG ++E A KPF +L DF RVD KK+ Sbjct: 824 PPCVNRSQSTFDVVDGELVYALGALKNVGVEAMNLVVEGRAGKPFVNLFDFARRVDLKKV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +SLD + +Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDQLDKNRRRVFESLDPLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 L S + R E + +GFY SGHPLD Y P L++ + +E + R Sbjct: 943 PRLSPSSDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKQVLTLDEVMEKARSGPLIA 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+P +E F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDPTGAFEVTLF 1039 >gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035] Length = 1166 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 492/1057 (46%), Positives = 673/1057 (63%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ L + A PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P +VLL + GY+ L++L S +YL Sbjct: 61 AGVQPIMGCQVDLAYLS----LAPGERAKPPAP-LVLLAQSECGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L+ L EG+I LTGG GP+ R AE + + FGDRLYV Sbjct: 116 G-SLPHVTLTELA-HHAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E ++++AY LPLVATN+ F + YEAHD ++ VA Sbjct: 174 ELQRHPGDGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP HY K++ EM ++F+DLPEALENTVEIARRC+F Sbjct: 234 YVDQSAPRRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRN-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A + I +DY +RL+FEL +I M F GYF Sbjct: 286 PILPKFADDEVEELRRQAR--AGLAARLAVIPHAAPVEDYDKRLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + Sbjct: 524 RPLDALVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPL 583 Query: 592 -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVAADGTVLYDPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ SIHP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ ++ Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P VN F V ++Y+L A+K VG + I ++PF +L D RVD K++ Sbjct: 824 APCVNRSEATFDVQGGVLHYALGALKNVGVEAMKLITVGRGNRPFATLYDVAQRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +S++ + Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 L + R E + +GFY SGHPLD Y +LR+ +K +E A + Sbjct: 943 PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1039 >gi|85713117|ref|ZP_01044151.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145] gi|85693065|gb|EAQ31029.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145] Length = 1159 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 417/1048 (39%), Positives = 606/1048 (57%), Gaps = 37/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++HS +S+++G + I ++A PA+A+TD N +++ A + Sbjct: 1 MAADTSFVHLRIHSDFSMVDGLTKVKPICQRVADMNMPAMALTDQMNFCGLVQYYGAAHS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++P+IG L + G P + + L +GYQ++I+L+S+ YL Sbjct: 61 QGLKPLIGADLWV----------WGDYPEGEIFRLTALAMNNDGYQQIIQLISKAYLRGH 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I +WL + G+I+L+G G I RA + ++ L +K+ F +R Y+ Sbjct: 111 VQGKPVIDKAWLAQ-HNAGIILLSGAREGDIGRALLKGHQEPLQESLAFYKQYFPERFYL 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + VQLA H+LP+VATN +FL EE++EAH++ +A+ + K Sbjct: 170 ELIRTGRAEEEAYLHSAVQLAAEHDLPVVATNEVVFLEEENFEAHEIRVAIHDGYQLGDK 229 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EM +F+DLPEALENTVEIA+RC+ +++ Sbjct: 230 RRPKKYSPQQYLRSAEEMHELFADLPEALENTVEIAKRCNVTIRLGEYF-----LPAFPT 284 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L + GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 285 GDLTEGDYLVKVSREGLEERLEFLFPDEAERQAKRPPYDERLQTELDVINQMGFPGYFLI 344 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 345 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 404 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA++RDVGR L PY VD + KL+ Sbjct: 405 VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLV 464 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A E AD V L++ ++ LEG+ R+A HA G+VI + Sbjct: 465 PGDPGMTL-AKAFEQVPELGERYDADEEVKELIDFARILEGVTRNAGKHAGGVVISPTTI 523 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD + R + Sbjct: 524 TDFAALYCDDEGKNPVTQFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARKKEAGEP 583 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ I +D + + +L T +FQLES+GM++ + + PD EDIIALV+L+RPGP Sbjct: 584 LIDINAISLNDKQCFDVLKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGP 643 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + K H ++P+L+ T GVI+YQEQVMQ+AQ+++GYSL Sbjct: 644 LESGMVDNFIDRKHGREKVSYPDETYQHECLEPILEPTYGVILYQEQVMQVAQVMAGYSL 703 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+E F GA N I +A+ IF+L+ KFA YGFNKSH+A Sbjct: 704 GGADLLRRAMGKKKPEEMAKQREVFREGAHNNNIDPELAMKIFDLVEKFAGYGFNKSHSA 763 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI + + + ++PP VN Sbjct: 764 AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLADECERMGLVLLPPDVNKGVYK 823 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D R+ Y + AIKGVG I+EA PF L DFC RVD KKLN+RVLE L Sbjct: 824 FTVDDEQRVVYGIGAIKGVGEAPIEAILEARNEGGPFTDLFDFCCRVDLKKLNKRVLERL 883 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + AGA+D G R L+ SL+ + A + + ++F + + EK Sbjct: 884 IRAGAMDSLGPHRASLMASLEKAMRQAVQHRQAESIGQADMFGVLTTEPEAVEHEFEKVK 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 +V E E+ LG Y +GHP++ ++ L+ + T + + +A +V+ Sbjct: 944 PWPEAVWLEGERETLGLYLTGHPINRFRAELQHYVVGQLANVNETRKNEYVGVAGLVIDV 1003 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++G R VT + + + + Sbjct: 1004 RVITNKRGQRFAIVTLDDKSARMDVMLY 1031 >gi|308274799|emb|CBX31398.1| DNA polymerase III subunit alpha [uncultured Desulfobacterium sp.] Length = 1179 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 406/1040 (39%), Positives = 601/1040 (57%), Gaps = 21/1040 (2%) Query: 4 YLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + S FVHL VH+ YSLL+GA+ ++ +++ ++AITD ++F ALEF A Sbjct: 1 MMSNISYPFVHLHVHTQYSLLDGAIRFKHLFNRVRDFGMDSVAITDHGSMFGALEFYLNA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+PIIGC+ + + T+Q + ++LL EGY+ L +L S L Sbjct: 61 TDNNIKPIIGCECYLAPRKLTDKTSQDGKR---LSHLILLAENNEGYRNLCKLASIAQL- 116 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181 + RI LQ+ GLI L+ G I + + A+ ++ LFG+ Sbjct: 117 EGFYYKPRIDKEVLQKYSR-GLIALSACLHGEIPMLIGEGNIKEADNAARFYQGLFGENN 175 Query: 182 LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQ + + +V + +PLVATN+ +L++ED AH++L+ + V Sbjct: 176 FYLELQNNGMEIQNKINEALVDMGNRLSIPLVATNDCHYLNKEDARAHEILLCIQTGKTV 235 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + T Y K+ EM + F+ P+A++NT +IA+RC+ + + P + E Sbjct: 236 QDPSHFKFETDQLYFKSGEEMNNFFASTPDAIKNTADIAKRCNIDMDFNNYHFPLYTAIE 295 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFL 358 + E+ L K + G E A+ ++ YRQRL E++VI M F GYFL Sbjct: 296 GN----TEQELLEQKVLHGFERVFAKIKSKNPAIDENLYRQRLKHEMSVIISMGFPGYFL 351 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI++AK NNIPVGPGRGS AGS+ AY+L IT++DP+ L+FERFLNP R SMPD Sbjct: 352 IVADFIKYAKDNNIPVGPGRGSAAGSLVAYSLGITNLDPIEHGLIFERFLNPARKSMPDI 411 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC + RD+V++YV KYG RV+QI TFGS++ +A +RDVGRAL +P ++D + K+ Sbjct: 412 DVDFCINGRDKVLKYVVEKYGENRVSQITTFGSMKTRAVIRDVGRALDIPLREIDEIAKM 471 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP+ + + + R E + L+ I + LEGL RHASTHAAG+VI D+P Sbjct: 472 IPDVLNISLDDA-LTQEPRLSELARQRSDIAELITICRTLEGLTRHASTHAAGVVISDKP 530 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 L + +P+YR ++ VTQF+MK +EK GL+KFDFLGL+ LT++ +L + Q D Sbjct: 531 LDEYLPLYRG-KNGELVTQFDMKRVEKIGLVKFDFLGLRNLTVIANTLSLISKQGNSPPD 589 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--I 655 + + D TY LL T G+FQLES GM++ L+ ++P+ EDI ALV+LYRPGP Sbjct: 590 IDSLDLTDQATYRLLAEGNTTGVFQLESKGMKELLKRVRPENFEDITALVALYRPGPIES 649 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I Y RK+G++ + + P ++P+LKET GVI+YQEQVM+IA +++GYS++EAD LR+ Sbjct: 650 GMIDDYVERKHGRKSVEYLVPELEPILKETYGVIVYQEQVMKIAGVIAGYSMAEADDLRK 709 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKKI E M Q+ERF+SGA+ NG+ K A +F L+ KF YGFNKSH+AAYA+I+YQ Sbjct: 710 AMGKKIVEIMAAQRERFVSGATANGVPKEKADTLFSLIDKFGGYGFNKSHSAAYALIAYQ 769 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++KTHY VEF+A+ +T EM + + + K+ + + ++PP +N DF V D I Sbjct: 770 TAYLKTHYQVEFMASLLTSEMGSTDSVVKYISECSSNGVSVLPPDINESDRDFSVSDRNI 829 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L A+K VG ++E F SL +FC RVD KK+N+RV+ESL+ GA D G Sbjct: 830 RFGLVAVKNVGENAIEAVIETRNKDKFTSLFNFCERVDLKKVNKRVIESLIKCGAFDSTG 889 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953 R +++ LD+ +Y Q V++ + + +F E +F D + + N Sbjct: 890 TFRSRMMAILDDAVEYGQRVQREKNSPQIGLFGEMTENESFQDIPRIPEIDEWNEKELLA 949 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LGFY +GHPL+ YK ++ K G R ++ + + KTRKG Sbjct: 950 FEKEYLGFYITGHPLNKYKELIAKYTNTDSLAIKDMNDGEIARFGGIITNIKIIKTRKGD 1009 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + +V + E FP Sbjct: 1010 DMAYVVTEDMIGSIETTVFP 1029 >gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127] gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127] Length = 1159 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 400/1048 (38%), Positives = 592/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 1173 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 410/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + +F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+++ D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALEN+VEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + KV Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582 Query: 597 ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +L+ + A+ ++ + H ++F Sbjct: 883 LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942 Query: 930 E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045 >gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] Length = 1159 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 400/1048 (38%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + ++ E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|116074620|ref|ZP_01471881.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916] gi|116067842|gb|EAU73595.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916] Length = 1177 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 381/1051 (36%), Positives = 581/1051 (55%), Gaps = 35/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PA+A+TD ++ A+E + GI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCQGTGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVVNGS----IDDPQQKKERRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I LQ+ +EGLI+ T G I +A +VA ++++FGD Y+ Sbjct: 118 FSRACIDKHLLQQY-SEGLIVATACLGGEIPQAIMRGRPEVARDVARWYQEVFGDDFYLE 176 Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + L+ATN++ +L+ D EAHD L+ V ++S + Sbjct: 177 IQDHGSVEDRIVNVEIVKIAKELGIGLIATNDAHYLTRNDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T ++++ EM +F D P ++ + + ++ + + + + Sbjct: 237 RLRYTGTEFIRSEEEMGRLFVDHLDPAVVQEAIATTAEVAEKVEDYDILGRYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L+ GL RL+ Y +RL +EL V+ +M F YFL+V D Sbjct: 297 DGHTPVSYLKEVTEQGLRDRLS--LAEGASIDAVYAERLVYELGVMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRSEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVA 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + + FRE DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLAAMIGEESPNPDFREKYQNDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + +D Sbjct: 535 LDELVPLQRN-NDGQVITQYYMEDVESMGLLKMDFLGLKNLTMIDKTLELVEANFGESID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPPQDPDTFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHQALEPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS+ G+ + IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRGIFVKGASERGVDEKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN +DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPTGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G RH++ + D PF+SL D C R+ S LNRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRHLIASRQEDGPFESLADVCDRLPSSVLNRRSLESLIHCGALDAL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942 +R QL+ LD + +A K+R + N+F S Sbjct: 894 EPKANRAQLMADLDLLLDWASSRAKDRESGQGNLFDLMAAATAAEGEGANDLSMAPKAPP 953 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + + E+ ++GFY S HPL P + + G + AMV Sbjct: 954 VPDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSAIAMVS 1013 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ +T + EA FP Sbjct: 1014 EYRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1044 >gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5] gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5] Length = 1173 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 420/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ +A PA+A+TD NN+ S ++F + + Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI G L + +D P + I LLV A GY+ L EL+SR ++ Q Sbjct: 59 AGIKPICGADLWLSNKD----------PDNPLSRISLLVMNAVGYRNLTELISRGFIDGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ E EGLIML+ G I A +VAE + +F +R Y+ Sbjct: 109 RNGQIIIEREWVAE-AAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYL 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D + V LA PLVATN+ F+ +ED+EAH+ + + + Sbjct: 168 EVQRTNRPNDEEQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP + + Sbjct: 228 RRSKNYSDQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E+++KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593 L+ P+Y D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + + + NRK+G+ ++ HP + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G + N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+K HYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSE 822 Query: 826 VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I EA PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 L+ +GALD G +R LL +++ K A+ + + H ++F Sbjct: 883 LIRSGALDRLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942 Query: 930 EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K R + E+ LG Y +GHP+D Y+ +R+ + + Sbjct: 943 VFVDEDADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G++T + + EA+ F Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045 >gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231] gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231] Length = 1174 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 401/1059 (37%), Positives = 593/1059 (55%), Gaps = 52/1059 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +HS +SL +G + + ++ +A PA+A+TD NLF A++F + A AG++PI Sbjct: 5 FAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ + D + +VLL + +GY+ L L++R YL Q + Sbjct: 65 IGAEIRVADADASERPA----------RLVLLCADTQGYRTLTRLLTRGYLEGQQQGVPV 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL+ GLI L+GG G + RA +A ++L +++ FGDR Y+ LQR Sbjct: 115 VDREWLRGRCA-GLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQRTG 173 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 D V+LA H + +VATN+ FL EDY AH+V + + ++ K RPR Sbjct: 174 RPGDEEHVQAAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRPRHY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL++ EM +F+D+PEALENT EIARRC+ L + LP F E I Sbjct: 234 SEQQYLRSPKEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASIDDVLR 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 E L+ L + Y +RL+ EL VI +M F YFLIVADFI+WAK Sbjct: 294 QEAERGLQERLQCSLVTDHPDGVELRRSYSERLERELEVINQMGFPSYFLIVADFIRWAK 353 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC + RD Sbjct: 354 RQGIPVGPGRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDIDFCMENRD 413 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YV +YG ++V+QI+T G++ A+A +RDVGR L PY VDR+ K+IP + + Sbjct: 414 RVIDYVGGRYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPFEIGITLE 473 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+A + D V LL +++KLEGL R+ HA G+VI L+ P+Y + Sbjct: 474 -KALAQEEELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELTDFAPLYCE 532 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLSLIPF 603 TQ++ IE GL+KFDFLGL+TLT++ ++ A +D++ + Sbjct: 533 PGGQGLATQYDKDDIEAVGLVKFDFLGLRTLTIIDWTVKAVNTQRSACDEPALDIAALAL 592 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 DD +T+ LL T +FQLES GM+ + +QPD EDIIALV+L+RPGP+ + + + Sbjct: 593 DDAKTFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPLQSGMVDDF 652 Query: 662 NNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 RK+G+ + H ++P+LK T G+I+YQEQVMQIAQ L+GYSL AD+LRRA Sbjct: 653 IARKHGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLGAADLLRRA 712 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK +EM +Q+ F+ GA + G+++ A +F+L+ KFA YGFNKSH+AAYA+++YQT Sbjct: 713 MGKKKPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAAYALLAYQT 772 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835 AW+K HYP F+AA ++ +MDN +K+ + R I + PP VN F+ + I Sbjct: 773 AWLKAHYPAPFMAAVLSSDMDNTDKVVALIDECRCLQIILDPPDVNRSGYAFQAREMTHI 832 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L A+KG+G + ++EA A P+ L D C RVD +++N+RV+E+L+ +G+LD Sbjct: 833 VYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLIRSGSLDGL 892 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVR 951 +R Q L + + A+ +NR ++F + + R Sbjct: 893 AVNRATAWQQLPDALRSAEQQCRNRDTGQVDLFGLGATPLEQAPLTVSDPGVPEWDEQER 952 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ----- 1006 E+ LG Y +GHP++ Y+ L + + A G R +++ Sbjct: 953 LAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVG----RKREGERK 1008 Query: 1007 ------------KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T+ G R+G++T + + FP Sbjct: 1009 VVVAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFP 1047 >gi|254421416|ref|ZP_05035134.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus sp. PCC 7335] gi|196188905|gb|EDX83869.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus sp. PCC 7335] Length = 1175 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 375/1056 (35%), Positives = 592/1056 (56%), Gaps = 42/1056 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA ++ ++D+ AIA+TD ++ A+E + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASHIDPLVDRALELGMDAIALTDHGVMYGAIELLKVCRKKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D K + K ++L GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINGDITKQEKRPK------YHQLVLAKNDIGYKNLVKLTTVSHLEGVQGKGL 115 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ EGLI+ + G I +A VA + +K L GD Y+ Sbjct: 116 FSRPCINKDLLEQYH-EGLIITSACLGGEIPQAILKKRLDVARRVAQWYKDLLGDDFYLE 174 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A ++ +VATN+S F+S D EAHD L+ + ++S+ Sbjct: 175 IQDHGSPEDRIVNVEIVRIAQELDIKIVATNDSHFISCVDVEAHDALLCIQTGKLISEDK 234 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YLK+ +EM +F D PE +E+ V + + ++ + + I Sbjct: 235 RLRYSGTEYLKSEAEMRRLFRDHIAPEIIEDAVSRTQEVADKVEEYNILGNPQIPNFPIP 294 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +E+ + A GL R+ + +YR R+ +E+ ++ +M F+ YFL+V D Sbjct: 295 EGHTKESYMEKVAWDGLLERMR--LSNREALTDEYRDRMAYEVAMMHQMGFATYFLVVWD 352 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ +NI VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 353 YIKFARDHNISVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDVDTDF 412 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++R++VI YV KYG + VAQIITF + +KA L+DV R L +PY++ D+L KLIP Sbjct: 413 CIEKREKVIEYVTEKYGTDHVAQIITFNRMTSKAVLKDVARVLDIPYNESDKLAKLIPVS 472 Query: 483 PAHPVSLQAI----ADDSRFREARLADP-------SVDRLLEISQKLEGLYRHASTHAAG 531 P L + D+ F+E + + R ++ + +EG + HAAG Sbjct: 473 RGKPTKLNVMISDKTPDATFKEKYDSGELIPGTNVTFQRWIDTAITIEGTNKTFGMHAAG 532 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI + PL +VP+ R+ +TQ+ M+ +E GL+K DFLGL+ LT++QK++D + Sbjct: 533 VVISEHPLDTIVPLQRN-NDGSVITQYYMEDVEAIGLLKMDFLGLRNLTMIQKAVDHIES 591 Query: 592 RGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R +DL +P DD +TY LL G+FQLESSGMRQ ++ ++P +EDI ++++LY Sbjct: 592 RHNIEIDLDALPLDDPKTYELLAGGELAGVFQLESSGMRQIVKELKPSGLEDISSVLALY 651 Query: 651 RPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+D I + +RK+G+EKI H +++P+L+ET G+++YQEQ+M+IAQ L+GYSL Sbjct: 652 RPGPLDAGLIPKFIDRKHGREKIDYAHKILEPILRETYGIMVYQEQIMKIAQDLAGYSLG 711 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK +EM+ +E FI GA KN + A ++F+ + FA+Y FNKSH+ A Sbjct: 712 RADLLRRAMGKKKIKEMELHREEFIEGARKNEFPRKNANDLFDQMVLFAEYCFNKSHSTA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y +++QTA++K +YPVE++AA +T + +K++ + IQ++PP +N VDF Sbjct: 772 YGFVTFQTAYLKANYPVEYMAALLTAISGDQDKVQMYIASCLSMRIQVLPPDINRSEVDF 831 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +N+I + L+A++ VG ++++ + PF SL D C RVD + +N+R LE+L+ Sbjct: 832 TPLENQILFGLSAVRNVGLGAIEALIKSREEEGPFKSLADLCDRVDLRAVNKRALEALIL 891 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----------TFSDK 937 +GAL+ +R QL+ L+ + ++AQ K+R N+F G TF Sbjct: 892 SGALESLEPNRQQLMHDLELVIEWAQSRAKDREVGQGNLFDMLGGGTSNEPTHTTTFESA 951 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + R + E+ +LGFY S HPL + + + E + Sbjct: 952 PKAPPIEDYDPQERLKLEKELLGFYISDHPLKNIQHSAKILAPIELSELGEKPEKVTLSA 1011 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ + T+KG + V + EA FP Sbjct: 1012 IVMLSMVKPVTTKKGDSMAVVQIEDLTGHAEAVIFP 1047 >gi|269127115|ref|YP_003300485.1| DNA polymerase III subunit alpha [Thermomonospora curvata DSM 43183] gi|268312073|gb|ACY98447.1| DNA polymerase III, alpha subunit [Thermomonospora curvata DSM 43183] Length = 1177 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 357/1062 (33%), Positives = 552/1062 (51%), Gaps = 43/1062 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL VH+ YS+L+GA LN + ++ + PAIA+TD N+ A +F + A AG+ Sbjct: 2 ADSFVHLHVHTEYSMLDGAARLNQLFAEVERQKMPAIAMTDHGNMHGAYDFWKHAKDAGV 61 Query: 68 QPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 PIIG + + + + + + L G L +L S Sbjct: 62 TPIIGIEAYMAPESRFHKKKVQWGEPSQKRDDVSGGGLINHMTLWARNKTGLHNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R Y + R+ L E +EG++ TG SG I A K TF+++ Sbjct: 122 RAYTEGFVFKYARMDEELLAE-HSEGVMATTGCPSGKIQTRLRLGQFDEALKAAATFQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + ++ L H +R ++++ +P V TN+S + E + AHD L+ V Sbjct: 181 FGKENYFLELMDHGLEIERRVRDGLLEIGKKLGIPPVVTNDSHYTHESEAAAHDALLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S DR R Y +E + E + Sbjct: 241 VGKQLSDPDRFRFDGTGYYLKSAEEMRSLDSSEVWAEGCRNTLLIAERVDPTGFFEHRNL 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + E + R + + G++ R G + +R+++++E+++I +M F G Sbjct: 301 MPRFPVPEGETEASWFRKEVMRGMDRRFPNGYD------EAHRRQVEYEIDIITQMGFPG 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL+ L+FERFLNP+R+SM Sbjct: 355 YFLVVADFIMWAKNNGIAVGPGRGSAAGSLAAYALGITDLDPLQHGLIFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF + RR +VIRYV K+G ++VA I TFG+++AKAA++D GR L PY+ DR+ Sbjct: 415 PDIDVDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAVKDAGRVLGFPYAMGDRI 474 Query: 476 CKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K P + L AI D++ R+ + V ++L+++Q LEGL R Sbjct: 475 SKAFPPAVMGKEIPLSAIFDENHPRYGEAGELRKMYEEEADVKQILDLAQGLEGLIRQWG 534 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ PL+ +P+ R +TQF+ E GL+K DFLGL+ LT++ +L Sbjct: 535 VHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIMDDAL 594 Query: 587 D-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 A +GV++DL +P DD +T+ LL TLG+FQL+ MR L M+PD EDI A Sbjct: 595 KAIKANKGVEIDLLKLPLDDKKTFELLARGDTLGVFQLDGGPMRALLRLMKPDNFEDISA 654 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIA 699 +++LYRPGP+ ++ Y RKNG+++I IHP ++ L T G+I+YQEQVM IA Sbjct: 655 VLALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLKDILDTTYGLIVYQEQVMAIA 714 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++GY+L AD+LRRAMGKK K E+DKQ E F G +NG S ++++L F+DY Sbjct: 715 QRVAGYTLGGADLLRRAMGKKKKAELDKQFEFFEKGMRENGYSDEAIKALWDILLPFSDY 774 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H A Y ++SY TA++K +YP E++AA +T D+ +K + + R+ + ++PP Sbjct: 775 AFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGVTVLPP 834 Query: 820 SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL 877 VN DF + + + L+AI+ VG I+ A F DF ++V S+ Sbjct: 835 DVNESDADFTPKGDAEVRFGLSAIRNVGENVVEAIIAARREKGAFTDFNDFLNKVPSQVC 894 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD- 936 N+RV+ESL+ AGA D G+ R LL + +++ +++F G Sbjct: 895 NKRVVESLIKAGAFDSLGHRRRALLTVHEQAIDSVIDIKRKEAIGQDSLFGALDGGEDTT 954 Query: 937 --KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIR 991 +T+ + + + E+ +LG Y S HPL + IL K Sbjct: 955 AFSVTIPDEEEWDKTTKLSFEREMLGLYVSDHPLLGVEHILAKEADTSIAALTGESDRPD 1014 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ + Q+K T++G+ + E FP Sbjct: 1015 GQVVTVAGLLSNLQRKVTKQGNSWAMFQLEDLGGSIEVMCFP 1056 >gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII] gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII] gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866] Length = 1159 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 406/1048 (38%), Positives = 596/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EG+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R ++LA +H LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 169 ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ EM +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PLDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ K + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++VS Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVSS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|124023285|ref|YP_001017592.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9303] gi|123963571|gb|ABM78327.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9303] Length = 1171 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 379/1049 (36%), Positives = 579/1049 (55%), Gaps = 33/1049 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + A I+P Sbjct: 2 AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIEDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+ +EGLI+ T G I +A VA ++++FG Y+ Sbjct: 118 FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V +A + L+ATN++ +LS+ D EAHD L+ V ++S + Sbjct: 177 VQDHGSPEDRIVNVEIVSIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ EM +F+D P+ L+ + + ++ ++ + + + Sbjct: 237 RLRYTGTEYIKSEQEMGRLFADHLEPDVLQEAIANTAAVAEKVEEYSILGSYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L + GL RL Y +RL +EL V+ +M F YFL+V D Sbjct: 297 EGHSAVSYLHEVSEQGLRQRLK--LATADPIDDHYGERLTYELGVMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIDRRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + ++ FRE DP V + ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVIAAEP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G ++D Sbjct: 535 LDNLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEISNGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P +D ET+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDQLPPEDPETFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS++G+ K IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRSIFVEGASRSGVDKKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++A+ +T+ +K++++ + I++MPP VN +DF +RI Sbjct: 774 TAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPAGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ D PF SL D C R+ S LNRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGALDAI 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944 +R QL+ L+ + +A ++R + N+F G ++ Sbjct: 894 DPESNRAQLIADLELLINWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKAAPVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ ++GFY S HPL + + G + + M+ Sbjct: 954 DYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITMLTEM 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 RQVTTRKGDRMAVLKIEDLTGGCEAVVFP 1042 >gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193] Length = 1170 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 496/1061 (46%), Positives = 680/1061 (64%), Gaps = 51/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ H+ YSLLEGAL L + D + PAIA+TD+NNLFSALEFS A Sbjct: 1 MTNAPRFIHLRSHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P P +VLL + GY+ L++L S +YL Q Sbjct: 61 AGVQPIVGCQIDL----RFVEPAPGERPQPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-Q 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L +I L+GG GP+ R AE+ + K +F DRLYV Sbjct: 115 GSELPYVTLEDLA-TNAGDVICLSGGPDGPVGRLLRQGQRPAAEELMQRLKAIFADRLYV 173 Query: 185 NLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D E++ V++AY +LPLVATN+ F + E YEAHD ++ +A Sbjct: 174 ELQRHPGEDGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q + R R+T HY K++ EMV++F+DLPEA+ENTVEIA+RC+F + Sbjct: 234 YVDQSEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFKAYLRD-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A GL+ RLA I ++Y++RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRIANEGLQNRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S+ + ++ R E +P VDRLL+ ++EGL R A THAAG+VIGD Sbjct: 464 LIPVEGVKPMSIVDSLKEEPRLAEEAKNEPVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + Sbjct: 524 RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIKQSGRDL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD TY L ++ T+ +FQ+ES+GM AL+ M+P Sbjct: 584 HVAADGTPLYEPPTGAVNEINAIPLDDKPTYDLYSSAKTVAVFQVESTGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +KI S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLKKIESVHPLIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA +NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAGENGVPAKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQT W+K ++PVEF+A M ++ +K+ + ++ ++ + + Sbjct: 764 YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVD 873 PP VN F V + + Y+L A+K VG R + EA D +PF ++ DF RV+ Sbjct: 824 PPCVNRSLATFNVVNGELVYALGALKNVGVDVMRLVAEARNDDGHERPFVNIFDFARRVN 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 KK+ +R LE L AGA D +R ++ SL+ + Y+ + + + + ++F E G Sbjct: 884 LKKIGKRPLEMLARAGAFDQLDRNRRRVFDSLEGLVNYSNAIHEQKNSNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y P L++ + +E + Sbjct: 943 DLPEPRLANTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMVKAERG 1002 Query: 994 N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ YE F Sbjct: 1003 PFLAKMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTIF 1043 >gi|83814834|ref|YP_445111.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855] gi|294506988|ref|YP_003571046.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8] gi|83756228|gb|ABC44341.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855] gi|294343316|emb|CBH24094.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8] Length = 1166 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 376/1056 (35%), Positives = 589/1056 (55%), Gaps = 50/1056 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F HL H+ YSLL+GA ++++++ PA+AITD NL+ EF A + +Q Sbjct: 2 PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIGC+ + + PT VLL GY+ L++L S +L + Sbjct: 62 PIIGCEFYLTPSGIQDQS------DPTRYHQVLLAKNQTGYENLMQLSSTSFL-EGFYYK 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L L++ EGL+ T G + + + A+++ + +FGD Y+ +Q Sbjct: 115 PRIDLDLLRK-HHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQD 173 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D++ ++Q A +++ ++ATN+ ++ ++D+EA D+L+ + + DR R Sbjct: 174 HDIDDQHTVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMR 233 Query: 248 VTPDHYL------KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + D + + EAL NT ++A +CSF L + ++P + E Sbjct: 234 FSNDQFYLKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGF 293 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ + LR+ + R Q RL+ EL +IA +SGYFLIV Sbjct: 294 ---EDMDGYLRHLTFERAKERYGDPL------PQTVVDRLNHELGIIADEGYSGYFLIVQ 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF A++ ++ VGPGRGS AGS +Y L IT++DPL + LLFERFLNP+R+SMPD DID Sbjct: 345 DFTDAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDID 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F R++VI YV KYG E V QI+TFG++ AK A+RDV R L +P + D + K+IP+ Sbjct: 405 FDDRGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPD 464 Query: 482 DPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + QA ++ FR + +P V ++++ ++ LEG RH HAAG++I +S Sbjct: 465 GPGVDLE-QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEIS 523 Query: 541 QLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 VP+ + ++ TQ++ W+E+ GL+K DFLGLKTLTL++ +++ + R V ++ Sbjct: 524 DYVPVSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDLN 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP DD T+ L T+ IFQ ES+GMR+ L ++P I D+IA+ +LYRPGP++N Sbjct: 584 IDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMEN 643 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y RK+G+E++ HPL++ +L+ T G+ ++QEQVMQ+A+ L+G+SL EAD+LRRAM Sbjct: 644 IPTYVARKHGQEEVEYPHPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRAM 703 Query: 718 GKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKK ++ M KQ+E+FI G +N I + A +F+++ +FA YGFNKSH+AAY++++Y+T Sbjct: 704 GKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYRT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--- 833 A++K HYP EF+AA+MT EMDN +K+ K ++AR ++++PPS+N F V Sbjct: 764 AYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPDG 823 Query: 834 --RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 R+ + LAAIK G +++A + PFDS+ D VD +N+R LE+L AGA Sbjct: 824 AYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAGA 883 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSS 949 LD R QL++ +D +Y Q V+ +R ++F + GT + + L S Sbjct: 884 LDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAKS 943 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------------IRGNNIR- 996 R + E VLGFY SGHPLD Y+ + E +R Sbjct: 944 QRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGPVRT 1003 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T+ G I + T + + E F Sbjct: 1004 FCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIF 1039 >gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG] gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG] Length = 1159 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 401/1048 (38%), Positives = 594/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|33862920|ref|NP_894480.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9313] gi|33634837|emb|CAE20822.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9313] Length = 1171 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 376/1049 (35%), Positives = 580/1049 (55%), Gaps = 33/1049 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + A I+P Sbjct: 2 AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIEDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+ +EGLI+ T G I +A VA ++++FG Y+ Sbjct: 118 FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V +A + L+ATN++ +LS+ D EAHD L+ V ++S + Sbjct: 177 VQDHGSPEDRIVNVEIVNIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ EM +F+D P+ L+ + + ++ ++ + + + Sbjct: 237 RLRYTGTEYIKSEQEMGRLFADHLEPDVLQKAIANTAAVAEKVEEYSILGSYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L + GL RL Y +RL +EL V+ +M F YFL+V D Sbjct: 297 EGHSAVSYLHEVSEQGLRQRLK--LATTDPIDDHYGERLTYELGVMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + ++ FRE DP V + ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVIAAEP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G ++D Sbjct: 535 LDDLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSNGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P +D ET+ LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDQLPTEDPETFALLARGDLEGIFQLESTGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS++G+ + IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRSIFVEGASRSGVDQKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++A+ +T+ +K++++ + I++MPP VN +DF +RI Sbjct: 774 TAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPAGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ D PF SL D C R+ S LNRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGALDAI 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944 +R QL+ L+ + +A ++R + N+F G ++ + Sbjct: 894 DPESNRAQLIADLELLIHWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKAAPVT 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ ++GFY S HPL + + G + + M+ Sbjct: 954 DYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITMLTEM 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG R+ + + EA FP Sbjct: 1014 RQVTTRKGDRMAVLNIEDLTGSCEAVVFP 1042 >gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1] gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1] Length = 1174 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 408/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I L +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A AE L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 174 RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ + GLE + Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + +++ Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV +G Sbjct: 829 NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932 ALD G +R LL +L K A+ + H ++F + Sbjct: 889 ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|283780088|ref|YP_003370843.1| DNA polymerase III subunit alpha [Pirellula staleyi DSM 6068] gi|283438541|gb|ADB16983.1| DNA polymerase III, alpha subunit [Pirellula staleyi DSM 6068] Length = 1192 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 369/1055 (34%), Positives = 571/1055 (54%), Gaps = 36/1055 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL HS YSLL+GA S+ +L + A+A+TD NL ALEF KA A Sbjct: 1 MSDRK-FVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI PIIG + I + + + LL +G++ LI+L S L + Sbjct: 60 LGINPIIGYEAYIAPGSRFEKKDAA-NSKEASYHLTLLAQNRQGFKNLIKLASAASL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-----SQVAEKRLLTFKKLFG 179 RI L + +EG+I L+G S A + A++ F K+FG Sbjct: 118 FYYKPRIDKEIL-QAHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFG 176 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR ++ + + R++ V +A LPLVAT+++ + ED EA DVL+ V Sbjct: 177 DRYFLEIMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGK 236 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + +R ++ YL++ EM F L +A+ + EIA L++ P + Sbjct: 237 FRTDTNRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPI 296 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 +K E+ LR V GL+ R A + + G ++ RL+ ELNVI ++ F Sbjct: 297 P----PEKTAEDYLRELCVQGLKERYAGDEEMLPGGELSEVVVARLERELNVINKLGFPN 352 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DF++ A++ ++P RGSG G++ +AL ++ + P+++ LLFERFL+ +R Sbjct: 353 YFLIVWDFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEA 411 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDFC+DRR ++IRYV++KYG VAQI TFG+L A+AA++DVGR L +P +V+++ Sbjct: 412 PDIDIDFCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKV 471 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 ++P++ +S A+ + DP V +L+++ ++EGL R+ THAA +VI Sbjct: 472 TAMVPDELHIHLS-DALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIA 530 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 D+PL++ VP+ R +TQ++M +E AGL+K DFLGL+ LT+L K+++ + Q Sbjct: 531 DKPLTEYVPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGK 590 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD P DD T+ LL T GIFQLES G+R L+ M+PD DIIA +LYRPGP Sbjct: 591 RVDPYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGP 650 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 ++ + Y K+G+++ IHP+ + +L ET GV++YQEQVM+I L G L+ + Sbjct: 651 LEGGMVADYVAVKHGRKQAEYIHPVCEKILSETNGVMVYQEQVMRILNELGGIELAASYT 710 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 + +A+ KK ++ ++K K +F+ GA + GI++ A + + L+ KFA YGFNKSH+ AYA+I Sbjct: 711 VIKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYALI 770 Query: 773 SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 +Y TA++K HYPVEF+AA ++ + + + + +D + I + PP+VN VD Sbjct: 771 AYMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESNVD 830 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D +I + L+AIKG G + I+ A PF L DFC RVD+ ++ +E+L+ Sbjct: 831 FAVKDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIETLI 890 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKF 943 AGA DCFG R Q ++ + Q V +R + +N+F E+ + + TL Sbjct: 891 KAGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTLPDV 950 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 S E+ VLGFY S HPLD +K L + + + L MV + Sbjct: 951 PELASKEMATQEKEVLGFYLSSHPLDEHKRTLATYRSHTTADIGPIPDRSEVILGGMVSA 1010 Query: 1004 KQQKKTRK---G--SRIGWVTFSEPAKEYEANFFP 1033 + T+ G SR + +P Sbjct: 1011 IKLSNTKNPKPGAPSRYVMFDLEDTEGTIRCILWP 1045 >gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968] gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150] gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968] gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150] Length = 1148 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 413/1039 (39%), Positives = 621/1039 (59%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + + ++A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L ++ V S++LL +EGY+ L L+S+ Y Q + Sbjct: 64 IIGSDLPCHNPEHP----------DRVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ W+ + + GLI L+GG SG I +A + ++A R L +++LF +R Y+ +QR Sbjct: 114 RVQNQWIPDY-SAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRT 172 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 + +++ LA +LPLVATN+ FL ++D+EAH+ + + ++ R + Sbjct: 173 GRPEEADYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQK 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM S+F+DLP AL NTVEI++RC+ L + LP F + Sbjct: 233 YSAQQYLRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDG----STV 288 Query: 308 ENELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 EN L + + GLE RL Q +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 ENYLSHLSKTGLEERLLQIFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIDYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + + + V L++++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITL-NKALEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 +Y + S V+QF+ +E AGL+KFDFLGL+TLT++ +L + ++ + L I Sbjct: 528 TAIYCEEGSSQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPID 587 Query: 603 FDDHET-----YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 T + LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTDDPASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ + HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA++ G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + ++++PPS+N F V D+ Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLKVLPPSINHSMYHFTVVDDAT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I+EA + L FC R+D +K+NRRVLE+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFDQ 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ ++ + + R E Sbjct: 888 WKVERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQ-EYVLCKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ I + +++ + + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRREFGDF-IVPISQLNPSMQKKAV-ICAQVVAIRKVVTKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + + F Sbjct: 1005 KLVILGMDDSTARLDIVIF 1023 >gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM 2831] Length = 1172 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 519/1050 (49%), Positives = 708/1050 (67%), Gaps = 34/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHSSYSLLEGAL + +++ AD+QPA+A+TDTNNLF ALEFS+KA G+QPI Sbjct: 10 FVHLHVHSSYSLLEGALKVGSLIKAAVADRQPALALTDTNNLFGALEFSEKAAGEGVQPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL + + + + PT IVLL GY L+ L SR Y ++ R Sbjct: 70 AGVQLSVA----FEAADPHQRQAPTSHGIVLLAQDETGYANLLRLASRAYFDTALGEAPR 125 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L +EGLI+LTGG +GP+D AF ++A RL K+ FG DRLYV +QRH Sbjct: 126 LDAGALA-GASEGLIVLTGGMAGPLDAAFRAGRPELALNRLKRLKETFGEDRLYVEIQRH 184 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E+ ++ LA H L +VATN F +DY+AHD L+A+A +VS R R+ Sbjct: 185 GLPEEGRIETALLDLAGRHGLGIVATNEPFFAKPDDYDAHDALLAIAEGRLVSDDRRRRL 244 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302 TP H K R+EM +F DLP+AL+ TVEIA RC+ + PILP F D Sbjct: 245 TPTHAFKTRAEMAELFRDLPDALQATVEIAMRCAVRARTRKPILPNFGAVAAGETPPMAD 304 Query: 303 IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 E + ELR +A AGLE+RL Q A G+ +DYR+RL FEL+VI + Sbjct: 305 ALAEASDAGAQAVSADEPTELRRQAEAGLELRLKQHGTAPGFSEEDYRKRLAFELDVIVK 364 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP Sbjct: 365 MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 424 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC + R+ VI+YVQ +YG +V QIITFG+L A+ LRDVGR L+MPY Sbjct: 425 ERVSMPDFDIDFCVEGRERVIKYVQQRYGEGQVGQIITFGTLLARGVLRDVGRVLEMPYG 484 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 QVD+L KL+P +PA+PV+ QAI + + ++A +P V RL++I++KLEGL+RHASTHA Sbjct: 485 QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAMEEEPVVGRLIDIAKKLEGLHRHASTHA 544 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L Sbjct: 545 AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 604 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 QRG+ +DL+ +P DD TY + T+G+FQ+ES+GMR+AL MQ D +EDIIALV+L Sbjct: 605 KQRGIHIDLASLPLDDPNTYGPMGRGETVGVFQVESAGMRKALCEMQADRLEDIIALVAL 664 Query: 650 YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 YRPGP+ NI VY RK G++ P ++PMLKET G+I+YQEQVM+IA++L+GY Sbjct: 665 YRPGPMANIPVYCERKLGRDAGNEASWYPDPKLEPMLKETFGIIVYQEQVMEIAKVLAGY 724 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL EAD+LRRAMGKKI+ EMD Q++RF+ G ++ G++K A IF+LLAKFADYGFNKSH Sbjct: 725 SLGEADMLRRAMGKKIRAEMDAQRDRFLKGCTERGLTKAKANEIFDLLAKFADYGFNKSH 784 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPS+NT Sbjct: 785 AAAYALLTYQTAYLKANFPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSINTSG 844 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F+V D +I+Y+LAAIKGVG R ++EA D+PF L R++ + +N+R LESL Sbjct: 845 EVFEVRDGKIFYALAAIKGVGREAVRALVEARGDRPFKDLACLARRLNPRMINKRTLESL 904 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 V AGALDC R + +++ I K A + T ++F + + + Sbjct: 905 VQAGALDCIEPDRARAFAAVEPIMKLAASAVEAETAGVTDMFGGVVAD-DVSLRIPPHEI 963 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI--RLAAMVV 1002 + + E +GF+ SGHPLD Y +L K+ ++ + + A G + R+AA V+ Sbjct: 964 WPMADTLKREYAAIGFFISGHPLDEYGDLLDKLRVQSWTDFCRAVRAGTSSVGRVAASVL 1023 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++T+ G+++G VT S+ +EA F Sbjct: 1024 DRAERRTKTGNKMGIVTLSDRTAHFEAIIF 1053 >gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223] gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223] Length = 1157 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 413/1047 (39%), Positives = 596/1047 (56%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL ++ A A+A+TD NN ++F Sbjct: 1 MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL EG+++L+G G + +A +S E ++ F DR ++ Sbjct: 110 VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +P+VATN +FL ED++AH++ +A+ ++ Sbjct: 169 ELIRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + YL++ EM +F+D+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + + GLE RL A+ +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ AD V L+++ +KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + Sbjct: 523 TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRK 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + I D + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D+ RI Y + AIKGVG I+EA D PF L DFC+R+D KKLN+RV+E L+ Sbjct: 823 FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L + A K ++F D K + + Sbjct: 883 CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L+ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GS++G +T + + E F Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029 >gi|325849029|ref|ZP_08170521.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480274|gb|EGC83337.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1149 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 349/1057 (33%), Positives = 569/1057 (53%), Gaps = 49/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F HL +H+ YSLL+G ++ +++K+ + + AITD N++ +EF +K Sbjct: 1 MTNN--FTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQD 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + D+ Q K ++LL GYQ LI++VS+ Y + Sbjct: 59 NGIKPIIGCEVYVSDNDHKIKNPQNK----RYYHLILLAKNNRGYQNLIKIVSKAYT-EG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L+E + +I L+ +G I++ N + A + + LFG + Y Sbjct: 114 FYYKPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFY 172 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ ++++ ++ +V TN+ ++ + D DVL + +++ Sbjct: 173 LEIQNHGLKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDAFYQDVLSCIQTGSLLED 232 Query: 243 KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R ++ D YLK++ M IF D P A EN+ +IA C+ L+ H P LP F + Sbjct: 233 EKRMKMPCDEFYLKDQQMMKEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFTK---V 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L+ GL G + ++R + E++VI M + YFLIV Sbjct: 290 PENMTNLDYLKYLVNKGLAK-------KYGKVDEKIQKRAEKEISVINNMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERFLNP+R+SMPD DID Sbjct: 343 DFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFLNPERVSMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD++ KLIP Sbjct: 403 FCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDKIAKLIPQ 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + + D R+++ ++ +E L RH S HAAG+VI L+ Sbjct: 463 AIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVISKEILTD 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 +VP+ +D VTQFNM IE+ GL+K DFLGL+ LT++Q ++ + + + + ++L Sbjct: 522 IVPLALS--NDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKNIDINLDN 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D + T+GIFQ ES+GMR L+ ++P +D++A SL+RPGP+D I Sbjct: 580 IDENDPKVLDQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K + I I + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK Sbjct: 640 YIKNKMYPQNISYIDQSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNLRRAMSKK 699 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M+ +E F+ G NGIS+ A I++ + FA Y FNKSH+AA Sbjct: 700 KMSVMEANREIFVHGKKDEKGNYEVLGCVNNGISEQNANKIYDEMISFAKYAFNKSHSAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++ QTA++K ++ E++A +T M + K+ + +A++ I+I+PP +N F Sbjct: 760 YSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDINKSERRF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885 N+I + ++AIK VG I++ +K + + +DF R+ D LN++ LESL Sbjct: 820 IAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKIYKTFKDFLERIESNDPTALNKKALESL 879 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943 + +GA D GY R +L+ + + EK N+ F + D I Sbjct: 880 IKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEEDDIKFPPV 939 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIR 996 + + + E+ VLGFY S HPL+ ++K E + Sbjct: 940 NEYKNKQKLSLEKEVLGFYISDHPLNSLGDRVKKYTNFSTEILSELRPIDLDKYDNKEVV 999 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A ++ +K + T+K + + + T + E FP Sbjct: 1000 MAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 1036 >gi|302672122|ref|YP_003832082.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316] gi|302396595|gb|ADL35500.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316] Length = 1179 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 368/1077 (34%), Positives = 558/1077 (51%), Gaps = 70/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VH+ YSLL+G+ + + ++ A AITD ++ ++F + AGI P Sbjct: 2 AFTHLHVHTEYSLLDGSNKIKEYVKRLGELGMTAGAITDHGVMYGVIDFYKACRDAGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ + + + +VLL GY L +VSR + + Sbjct: 62 VIGCEVYVAPGSRFEK--ETAVSDDRYYHLVLLAENNVGYANLSHIVSRGFT-EGYYYKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ + L++ EG+I L+ +G I R + A++ + +FG ++ LQ Sbjct: 119 RVDMELLEQYH-EGIIALSACLAGEIPRNIVKGTPDKAKEAAIRLDNIFGHGNFFLELQD 177 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + ++ L+ ++PLVATN+ + +D EAHD+L+ + VS +DR R Sbjct: 178 HGIPEQRMVNASLMALSQELDIPLVATNDCHYTYADDAEAHDLLLCIQTGKXVSDEDRMR 237 Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +Y+K+ EM S+F EAL+NT +IA RC ++ LP F E D Sbjct: 238 YEGGQYYVKSEEEMRSLFPYAQEALDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + GL R + +LD+EL VI RM + YFLIV D+I + Sbjct: 294 SWTYLNKLCLDGLHERYPDDDGTL-------KDKLDYELGVIKRMGYVDYFLIVWDYINY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++N I VGPGRGS AGS+ +Y + IT+IDP+++ LLFERFLNP+R+SMPD D+DF +R Sbjct: 347 CRENGIAVGPGRGSAAGSIVSYCMHITNIDPIKYDLLFERFLNPERVSMPDIDVDFEYER 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R +VI YV KYG ++V QIITFG+L AK +RDV R + +PYS D + K+IP + Sbjct: 407 RQDVIDYVTEKYGADKVVQIITFGTLAAKGVIRDVARVMDLPYSFGDTISKMIPTELNIT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + R +D +V +L+++ +KLEGL RH S HAAG+VI P LVP+ Sbjct: 467 LD-KALEMNPELRSQYESDETVHKLIDMCKKLEGLPRHTSIHAAGVVICSAPAEDLVPLS 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-------GVKVDLS 599 R TQF M IE+ GL+K DFLGL+TLT+++ + +F + +++ Sbjct: 526 R-SAEGNVTTQFTMTTIEELGLLKMDFLGLRTLTVIKDATNFANRSLGAKPGDANYINID 584 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I ++D + + G+FQLES GM+ ++ ++P +EDIIA +SLYRPGP+D I Sbjct: 585 EIDYNDPAVLASIGSGRCDGVFQLESGGMQSFMKELRPQSLEDIIAGISLYRPGPMDFIP 644 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y KN I P ++P+LK T G I+YQEQVMQI Q L GY+L AD++RRAM K Sbjct: 645 KYIAGKNDAGAITYQTPELEPILKPTYGCIVYQEQVMQIVQQLGGYTLGRADLVRRAMSK 704 Query: 720 KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 K + M+ ++ F + G + GIS I I++ + FA Y FNKSHAA YAV Sbjct: 705 KKQHVMEVERANFVNGNPEENVPGCASKGISPEIGNAIYDSMMDFAKYAFNKSHAACYAV 764 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++ QTAW+K +YPVEF+AA MT +DN K+ + R NI ++PP +N F V Sbjct: 765 VALQTAWLKYYYPVEFMAALMTSVIDNPGKVSGYIMSCRNMNIALLPPDINEGFDGFSVT 824 Query: 832 D----------------------NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 + I Y+L AIKGVG I++ F +L DF Sbjct: 825 EIDAGDNDKPIPGAVVTTAPGRKKAIRYALTAIKGVGRPVIASIVQERQLHGKFKNLNDF 884 Query: 869 CSRVDSKK--LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 SR+ + +N+R +E+ + AGA +CF +R Q + +I +N + Sbjct: 885 LSRMQGRANDVNKRAVENFIKAGAFECFEGTRKQHMTVYAHIMDQLHNSNRNSMAGQMTL 944 Query: 927 --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 FA E+ +I L + E E+ VLG Y SGHPL+ Y I +K Sbjct: 945 FDFAGEEEKKMYEIPLPDVGEFPRELLLEFEKEVLGIYVSGHPLEEYIGIWKKKITNTTT 1004 Query: 985 ES--------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + ++ K+ K T+ + ++T + E FP Sbjct: 1005 DFYLDDETGVPVVRDNATVTIGGIISDKKVKYTKTDQIMAFLTVEDLVGSIEVIVFP 1061 >gi|237736354|ref|ZP_04566835.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229421396|gb|EEO36443.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1138 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 384/1033 (37%), Positives = 594/1033 (57%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G +++ L + AIAITD NLF ALEF +KA GI+PI Sbjct: 5 FVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + + + ++LL EGY+ L+++ S ++ R Sbjct: 65 IGMEAYVCERGMEDKEGRN-------FHLILLARDNEGYRNLLKISSESFIRG-FYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 + ++L+E +EGLI L+ G I R S + + +FG + ++ +Q Sbjct: 117 VDKNFLKE-HSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFFIEVQA 175 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + ++ ++ ++A + L LVATN++ +++E ++ D+L+ V +S + R R Sbjct: 176 NGIKEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRMR 235 Query: 248 VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + + + EA++NT+ IA RC+ ++ P + C K Sbjct: 236 IETEELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTC---VK 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR GL R G + +R+++EL +I +M ++GYF++V DFI Sbjct: 293 TIEAFLRKLVYLGLSKRYPHGL------TKSIVERVEYELGIIEKMGYAGYFVVVWDFID 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ NIP+GPGRGS AGS+ AYAL IT +DPL+++L+FERFLNP+R+SMPD DID CQ+ Sbjct: 347 FARRKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR L P S++D + KL+P + Sbjct: 407 RRQEVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPFNATI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + FR+ L D + ++++IS K+E RHAS HAAGIVI PL+ VP+ Sbjct: 467 KQT---LEGVEEFRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVPL 523 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++ L IP + Sbjct: 524 YCDTKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEEIRLEDIPLN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 + Y LL+ T G+FQ+ES G+R+ L ++PD EDIIAL++LYRPGP+ + +V + Sbjct: 584 SKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDFI 643 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +I HP ++ LKET GVI+YQEQVM+IA +++GYSL EAD+LRRAMGKK Sbjct: 644 NGKNGITEIKYPHPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAMGKKNV 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + M++ +E+FI+ + +NG S+ A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K H Sbjct: 704 QIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAH 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y + AA MT EM ++E I + DA+ N+++ P VN F V + I +SLAAI Sbjct: 764 YMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDGIVFSLAAI 823 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG + I+E + + + +LEDF R LN++ LESL+ AGALD +R Q Sbjct: 824 KNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPGNRRQK 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +S+D I YA K + N+F K + TL + + + E+ LGF Sbjct: 884 FESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLGV-FTLPQVTEYSLDELLSKEKEYLGF 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020 YFS HPLD Y+ +++ + E ++ ++ ++ T+ G +G Sbjct: 943 YFSAHPLDSYRRLIKVFRLSPINEIKEEKTTQILKTCGILRDVKKIVTKNSGQIMGVFEL 1002 Query: 1021 SEPAKEYEANFFP 1033 + + FP Sbjct: 1003 EDYYDKISCVLFP 1015 >gi|223039577|ref|ZP_03609864.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267] gi|222879148|gb|EEF14242.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267] Length = 1328 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 388/1062 (36%), Positives = 599/1062 (56%), Gaps = 45/1062 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL +H+ YSLL+GA + + + + A AITD N+F A++F + Sbjct: 1 MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKSQGVKAAAITDHGNMFGAIDFYKTMKN 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+P+IG + I + L G + L+ GY+ L+ L S Y+ + Sbjct: 61 EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFK 175 RI L+E +EG+I + G ++ + A++ L +K Sbjct: 115 FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173 Query: 176 KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FGD Y+ + RH D+ R ++++LA + ++ATN++ + ++ AH+V M + Sbjct: 174 DVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRAGAHEVFMCI 233 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 A + ++ +R R + + Y+K ++M +F+D+PEA+ NT EI +C +++ P Sbjct: 234 AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLTIKLGDATPP 293 Query: 294 RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 F E + + ++ GLE RL ++YR Sbjct: 294 NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEDRLK---FVPAERHEEYRT 350 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL E+++I +M F GY +IV DFI AKK +PVGPGRGS AGS+ AY+L ITD+DPL Sbjct: 351 RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV KYG VAQ+ITFG L AK +R Sbjct: 411 YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R MPY++ D + KLI ++ + QA + + E + + +R+ + + LE Sbjct: 471 DVARVCDMPYAEADAMAKLILDEIGITLE-QAFEKEPKIGELIATNSNANRIWKFALDLE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 GL R+A HAAG+VI + L P+ + D VTQ+++K++E LIKFDFLGLK Sbjct: 530 GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589 Query: 578 TLTLLQKSLDFLAQRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT++ ++ + +R K + +D +TY +++ TLG+FQ+ES GM++ M+ Sbjct: 590 TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PDC EDIIA++SLYRPGP+D I + RK+G E I I P ++P+L+ T GVI+YQEQVM Sbjct: 650 PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELEPILEPTYGVIVYQEQVM 709 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL AD++RRAMGKKIKEEMD+ K +FI GA G+ + +FEL+ F Sbjct: 710 QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAQAQGLDGKKSGELFELILHF 769 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAY +++QTA++KT+YP EF+AA +T E N +KI ++ + ++ +I I Sbjct: 770 ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829 Query: 817 MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 +PPSVN +F V G + I Y L AIKGVG +I+E A F ++DF SRV Sbjct: 830 LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D+ K+N++V ESL+ +G+ D FG +R +L +LDNI + + + N E++F ++ Sbjct: 890 DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949 Query: 933 TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + K +L S + + E +G Y SGHPLD Y+ + K+ ++ Sbjct: 950 MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + L + + + ++K G ++G + + E F Sbjct: 1010 NGEMLLVGKIENLTTRISKKNGKKMGTIEMLDLYGTVEIAVF 1051 Score = 44.8 bits (104), Expect = 0.089, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEP 1023 HPL+ +K + ++ ++ + + I + + + ++K G ++ + Sbjct: 1102 SHPLEKFKEQIEQIKHTPSKDFGKIDKTSEILVVGKISEAAKIVSKKTGREFMMLSIMDL 1161 Query: 1024 AKEYEANFF 1032 ++ F Sbjct: 1162 FSTFKVAAF 1170 >gi|260655562|ref|ZP_05861050.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] gi|260630010|gb|EEX48204.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1] Length = 1140 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 382/1038 (36%), Positives = 596/1038 (57%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E FVHL VH+ YSLL+GA+ ++ + A QPA+A+TD ++ A+EF Q + Sbjct: 1 MEHP--FVHLHVHTEYSLLDGAIRCGDLAARTAQWHQPAVAMTDHGVMYGAVEFFQACKS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIGC++ + + + ++LL EGY L++LVS D Sbjct: 59 AGVKPIIGCEMYVAPEGIQSREKRS-------HHLILLAKDDEGYHNLVKLVSIANT-DG 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L ++GLI + +G + A + ++ + G + Y Sbjct: 111 FYYKPRIDHDLLARY-SKGLIASSACLAGEVSSLLLAGEDGRAFETAQLYRDIMGPENYY 169 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + + ++ +V++A + PL+ATN+S +L+ ED++ H++L+ V + ++ Sbjct: 170 LEIMSNTLPEQVAANKLLVEMARRNGFPLIATNDSHYLNPEDFDWHELLLCVGTNKTIND 229 Query: 243 KDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R + + +++P+AL NTVEIA RCSF ++ + K Sbjct: 230 PGRMSFEVNDFYLRSPEEMWNFFGAEVPDALTNTVEIAERCSFEFKLKTGHYS--LPKFD 287 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + ++ L A AGLE RL G +Y QRL +EL +I++M FSGYFLI+ Sbjct: 288 VPEGETLDSFLAKGARAGLEKRLG------GVIPPEYEQRLQYELGIISQMGFSGYFLII 341 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 AD IQ K +IP+GPGRGS AGS+ AYA+ IT++DPLRF L+FERFLNP+R+SMPD D Sbjct: 342 ADVIQACKNRHIPIGPGRGSAAGSLVAYAMRITELDPLRFGLIFERFLNPERISMPDIDT 401 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D R+ +IRYV +KYG E V+QIITFG +++KAA++DVGRA+ +PY+ VD++ KL+P Sbjct: 402 DVSDKGREALIRYVIDKYGVENVSQIITFGRMKSKAAIKDVGRAMGLPYADVDKVAKLVP 461 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +AI + DP V LL+ + K+EGL RH S HAAG+VI PL+ Sbjct: 462 --DGVKSIAEAIEQTPDLKSLNDEDPQVAELLDSASKMEGLARHCSQHAAGVVITPMPLT 519 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599 +VP+ + + VTQF+M+ +E GL+K DFLGL+TL++L+ +L+ + + V+L Sbjct: 520 DVVPVRKIG-ENQVVTQFSMEPVENLGLVKMDFLGLQTLSILEDALENIRENGKGNVNLE 578 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD E + LL TLGIFQLES GMR+ + M PD D++A+++LYRPGP+++ + Sbjct: 579 EIPLDDPEVFKLLQNADTLGIFQLESPGMRRLIRRMVPDSFNDLVAILALYRPGPLESGM 638 Query: 660 VYNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 V + + +HP ++P+LKET GV++YQEQVM+ A +L+GY+L AD+LRRAMG Sbjct: 639 VDQYVDCKHGERVHYLHPKLEPVLKETYGVVLYQEQVMKCASVLAGYTLGGADLLRRAMG 698 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK E M++Q+ F+ GA KNGI K A NIF+++ KFA YGFNKSH+AAYA+ISYQTAW Sbjct: 699 KKKIEVMNQQRAIFVEGALKNGIDKNSAENIFDIIQKFAGYGFNKSHSAAYALISYQTAW 758 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 +KTHYP EF+AA +T ++ + + + ++ R I ++ P +N F I + Sbjct: 759 LKTHYPKEFMAAYLTSKIGAKKDVMASYVKEVRSSGIDVLAPDINESRSSFTAAGEVIRF 818 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+ +G I+E+ PF + DF +RVD + +N+ LESL+ AGA DCF Sbjct: 819 GLGAVSRMGENAVSAILESRKAGGPFKDMWDFVTRVDLRHVNKAALESLIKAGAFDCFST 878 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R QLL++ + A + + + ++F D++ L ++ R E+ Sbjct: 879 NRRQLLEAASPMVDAASRLHVD--DGQASLFGDLSSL--DRVELPDVPDDDLETRLAMEK 934 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKTRKGSRI 1015 V+G Y SGHP+D ++ +++ + + + A ++ +++ T++G + Sbjct: 935 EVIGMYISGHPIDQFREVIQGQVNATASDLAHWHSQSVAPVFAGLLTEWKERITKRGDAM 994 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G + + +E E FP Sbjct: 995 GVLRLDDGEREVEVVCFP 1012 >gi|15639656|ref|NP_219106.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum str. Nichols] gi|189025894|ref|YP_001933666.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|6014994|sp|O83675|DPO3A_TREPA RecName: Full=DNA polymerase III subunit alpha gi|3322971|gb|AAC26567.1| DNA polymerase III, subunit alpha (dnaE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018469|gb|ACD71087.1| DNA polymerase III, subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|291060035|gb|ADD72770.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum str. Chicago] Length = 1170 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 385/1036 (37%), Positives = 580/1036 (55%), Gaps = 25/1036 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL VHS+YSLL+GA SL ++ + Q A+A+TD N+F AL F + A Sbjct: 1 MARM-SFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+ IIGC+L + + + T +++L GY+ L+ L S+ Y+ + Sbjct: 60 EGIKAIIGCELYVAPESRFDRSE--HTIGRRYYHLIVLAKNETGYRNLMVLSSKAYI-EG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L + EGLI L+ +G + + AE+ ++ LFG D + Sbjct: 117 MYYKPRVDDELLAQ-HAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYF 175 Query: 184 VNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H + + + +++LA +PLV TN+ + +ED A D+L+ + S Sbjct: 176 IEVQDHGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSD 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + T + YLK+ +M +F PE + NTV IA+RC+ + P+LP + Sbjct: 236 PNRLKFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEF 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E+ +R+ GL +++ + R D+EL+VI RM F GYFLIV Sbjct: 296 SSK---EHYIRHLVHRGLY-------DRYAVVSEEIKARADYELDVIVRMDFVGYFLIVW 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK+++IPVGPGRGSGA S+ AYAL ITDIDPLR+ LLFERF+NP+R+SMPDFDID Sbjct: 346 DFITWAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDID 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV+ +YG++ V QIITFG+L+ KAA+RDVGR L +P S+V + KL+P+ Sbjct: 406 FCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPD 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP A +S +P L +I++KLE R+ S HAAGIVIG L+ Sbjct: 466 DPKLTFKK---AYESEQLAQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTD 522 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598 VP+Y+D ++ TQF M IE GL+K DFLGLKTLTL+Q++ + + ++ + Sbjct: 523 YVPLYKDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSI 582 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S I D T+ +L + +FQ ES GM+ L+ +P +ED+IAL +LYRPGP+ I Sbjct: 583 SDISDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFI 642 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y K KI P ++ +L ET GVI+YQEQVMQ+AQ ++G+SL EAD+LRRAMG Sbjct: 643 DQYIESKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMG 702 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK M ++K+ F A K G K A NIFE+L FA YGFNKSHA AY+V++YQTA+ Sbjct: 703 KKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAF 762 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++P EF+AA+++ E+++ EK+ + +A + + I P VN F V + I Y Sbjct: 763 LKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYG 822 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L IKG+G A + + + P+ S + RV + LN++ E ++ AG D FG + Sbjct: 823 LLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVT 882 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R L LD+ KY + +++ ++F + T + R E+ Sbjct: 883 RASLTAHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKE 942 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 ++G+Y SGHPLD Y+ ++ + N + ++ + T+ G + + Sbjct: 943 LMGYYISGHPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAF 1002 Query: 1018 VTFSEPAKEYEANFFP 1033 +F + + FP Sbjct: 1003 GSFEDLHGSVDIVVFP 1018 >gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700] Length = 1158 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 403/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHLQVHS +S+++G + ++ + A+A+TD N + F +A ++G Sbjct: 2 SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + Q + LL EGY+ + L+S+ Y Sbjct: 62 VKPIIGADVLV----------QSDLCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E G+I+L+GG +G + + +++ + + +++ F D Y+ L Sbjct: 111 DVPYIDQQWLVE-HRTGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTL 169 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + + LA +LP+VATN+ FL E+D+EAH++ +A+ + R Sbjct: 170 TRTGRPDEEEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDPKR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ + + Sbjct: 230 PKNYTGQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGE-----YFLPQFPTGD 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 285 LSTEDYLVKRAKEGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DDH+++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 584 DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F Sbjct: 764 ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ Sbjct: 824 VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L ++L++ + + K+ ++F T + + + + Sbjct: 884 SGAFDKLGPHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LG Y S HP+ Y L +E RG + +VV+ + Sbjct: 944 TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRI 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+ IG T + + + F Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|238918790|ref|YP_002932304.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146] gi|238868358|gb|ACR68069.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146] Length = 1162 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 409/1051 (38%), Positives = 603/1051 (57%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL VHS YS+++G ++ K+AA PA AITD NL ++F A Sbjct: 1 MAE-PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G + + + +T + ++ LL +GYQ L +L+S Y Sbjct: 60 AGIKPLVGADVLV----------RSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + I WL GLI+L+G G + + + +A + + +++ F D ++ Sbjct: 110 GAEGPTIDRDWLIAYRA-GLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LPLVATN+ FL D++AH++ +A+ + Sbjct: 169 ELVRTGRPDEESYLHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +F+DLPEAL+N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E L KA GLE L + Y +RL+ EL VI +M F GYFLI Sbjct: 284 GEMTTEAFLVKKAHEGLEERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R L Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG++ +A++IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGQYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRR++E Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMME 882 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942 L+ +GA D G R L+ SL + K A+ + ++F + + + Sbjct: 883 KLIMSGAFDRLGPHRAALMSSLSDALKAAEQHARAEAIGQVDMFGVLAEEPEQVEQSYGS 942 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001 + + + E+ LG Y +GHP+ Y + + G ++ T RG +V Sbjct: 943 VPPWPAQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1003 LGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033 >gi|329120922|ref|ZP_08249554.1| DNA-directed DNA polymerase III alpha subunit [Dialister micraerophilus DSM 19965] gi|327471381|gb|EGF16832.1| DNA-directed DNA polymerase III alpha subunit [Dialister micraerophilus DSM 19965] Length = 1138 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 373/1032 (36%), Positives = 571/1032 (55%), Gaps = 28/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + K N K + ++LL EGYQ LI++ S+ + ++ Sbjct: 63 IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAW-VEGYYVKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ ++G+I LT G I +A + A K + FG + ++ LQ Sbjct: 119 RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q + +A + L LVATN+ ++ +ED ++H++ + ++ + + Sbjct: 178 HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ EM S+ + P A+ENT IA RC+ L LP + + Sbjct: 238 FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVPCGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR L R RL++ELN+I +M FS YFLIV DFI++ Sbjct: 294 AATYLRKLCFDALPKRYPHFN-------DKEESRLNYELNIINQMGFSDYFLIVMDFIRY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C R Sbjct: 347 AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P +VDR+ K+IP P Sbjct: 407 RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + F + +V L++ KLEGL R + THAAG+VI +P+ + VP+ Sbjct: 467 LK-STLESSRDFLNEYENNNTVRTLVDHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 + D TQ+ E+ GL+K D LGL+ LT++ +L + + RG+ V +S I D Sbjct: 526 L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMSEIDDSD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T ++L T+G+FQ ES G L + P+ ED+I +V+LYRPGP+ + + + N Sbjct: 585 AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+GK K+ HP ++ +LKET GVI+YQEQVMQIA + G++L ++D+LRRAMG K E Sbjct: 645 RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+E F+ GA GI K+I+ ++F+L+ FA YGFNKSH+ Y I+++TA++K ++ Sbjct: 705 ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+A+ MT + ++ K+ ++ ++ R+ I+++ P +N F V I + L+ I+ Sbjct: 765 RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG HI+E+ F L D R+DSK LN R ESL+ GALDCFGY R QLL Sbjct: 825 NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD+ A +R +N+FA + +I + + E+++LGFY Sbjct: 885 AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHPLD Y ++ ++ G + + +V ++ T+KG +G+ T Sbjct: 943 VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002 Query: 1022 EPAKEYEANFFP 1033 + E+E FP Sbjct: 1003 DYDGEFECVIFP 1014 >gi|238018709|ref|ZP_04599135.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748] gi|237865180|gb|EEP66470.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748] Length = 1135 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 369/1031 (35%), Positives = 602/1031 (58%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ + GI+PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + L Q + ++LL T EGY+ L+++VS+ + R Sbjct: 64 IGCEVYVTEGSRLDK--QEGRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG ERV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GQAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + ADP+V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDDGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V + I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD+K +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ ++F + + D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + TR+ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|313892071|ref|ZP_07825669.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus UPII 345-E] gi|313119523|gb|EFR42717.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus UPII 345-E] Length = 1138 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 373/1032 (36%), Positives = 570/1032 (55%), Gaps = 28/1032 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YSL +G + ++ + Q AIAITD ++ A+ ++ GI+P Sbjct: 3 SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+L + K N K + ++LL EGYQ LI++ S+ + ++ Sbjct: 63 IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAW-VEGYYVKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L++ ++G+I LT G I +A + A K + FG + ++ LQ Sbjct: 119 RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177 Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + Q + +A + L LVATN+ ++ +ED ++H++ + ++ + + Sbjct: 178 HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y K+ EM S+ + P A+ENT IA RC+ L LP + + Sbjct: 238 FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVPCGE----T 293 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR L R RL++ELN+I +M FS YFLIV DFI++ Sbjct: 294 AATYLRKLCFDALPKRYPHFN-------DKEESRLNYELNIINQMGFSDYFLIVMDFIRY 346 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C R Sbjct: 347 AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P +VDR+ K+IP P Sbjct: 407 RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + F + +V L+E KLEGL R + THAAG+VI +P+ + VP+ Sbjct: 467 LK-STLESSRDFLNEYENNNTVRTLVEHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 + D TQ+ E+ GL+K D LGL+ LT++ +L + + RG+ V + I D Sbjct: 526 L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMYEIDDSD 584 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663 +T ++L T+G+FQ ES G L + P+ ED+I +V+LYRPGP+ + + + N Sbjct: 585 AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+GK K+ HP ++ +LKET GVI+YQEQVMQIA + G++L ++D+LRRAMG K E Sbjct: 645 RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + Q+E F+ GA GI K+I+ ++F+L+ FA YGFNKSH+ Y I+++TA++K ++ Sbjct: 705 ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 EF+A+ MT + ++ K+ ++ ++ R+ I+++ P +N F V I + L+ I+ Sbjct: 765 RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 VG HI+E+ F L D R+DSK LN R ESL+ GALDCFGY R QLL Sbjct: 825 NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD+ A +R +N+FA + +I + + E+++LGFY Sbjct: 885 AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHPLD Y ++ ++ G + + +V ++ T+KG +G+ T Sbjct: 943 VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002 Query: 1022 EPAKEYEANFFP 1033 + E+E FP Sbjct: 1003 DYDGEFECVIFP 1014 >gi|253581934|ref|ZP_04859158.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251836283|gb|EES64820.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1138 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 392/1033 (37%), Positives = 593/1033 (57%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G +++ LD+ A AIAITD NLF LEF +KA GI+PI Sbjct: 5 FVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + L+ + +VLL +GYQ L+++ S Y+ R Sbjct: 65 IGLEAYVSEFSMLEKE-------GRIFHLVLLAENNKGYQNLLKISSESYIKG-FYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I +L ++ +EG+I L+ G I R N S + ++ + + +FG D Y+ +Q Sbjct: 117 IDKEFL-KMHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQA 175 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + ++ LA H+L +VATN++ +++E ++ D+L+ V V+ + R R Sbjct: 176 NGVKGQTALNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRMR 235 Query: 248 VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D + + + EA+ NT+EIA RC+ ++ P + C K Sbjct: 236 IETDELFLKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEYEIPSC---VK 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR GL R G +R+++EL+VI +M ++ YF++V DFI Sbjct: 293 TIEEFLRKLVYFGLSKRYPHGLTIS------VLERVEYELSVIEKMGYAAYFVVVWDFID 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ+ Sbjct: 347 YAKRNRIPIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR + P S+VD + KL+P + Sbjct: 407 RRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFNATI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 Q + + F+ L DP + ++++IS +LE RHAS HAAGIVI PL+ VP+ Sbjct: 467 ---QQTLNNVEEFKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVPL 523 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++LS IP + Sbjct: 524 YSDNKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEDIELSEIPLN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 + Y +L+ T G+FQ+ES G+R+ L ++PD EDIIAL++LYRPGP+ + +V + Sbjct: 584 SKKVYEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFI 643 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +I HP ++ LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 644 NGKNGTSEIKYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKNI 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + M++ +E+F+ + NG +K A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K + Sbjct: 704 QIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAY 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y + A+ MT EM +VE I + +DA+ N+++ P VN F V I +SLAAI Sbjct: 764 YMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEGIIFSLAAI 823 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG + I+E + + + + EDF R LN++ LESL+ AGALD +R Q Sbjct: 824 KNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRRQK 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +S+D I YA K + N+F K + TL + + E+ LGF Sbjct: 884 FESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQIPEYSLEELLAREKEYLGF 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020 YFS HPLD Y+ ++ + E R ++ ++ T+K G + Sbjct: 943 YFSAHPLDNYRRLIEVYRLSRIAELKEEKNVQIFRTCGILREIKKIVTKKTGQIMCLFEL 1002 Query: 1021 SEPAKEYEANFFP 1033 + + FP Sbjct: 1003 EDYYDKINCIVFP 1015 >gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis ATCC 33393] gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis ATCC 33393] Length = 1172 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 403/1046 (38%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G Sbjct: 16 SPPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSG 75 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + Q + + LL EGY+ + L+S+ Y Sbjct: 76 VKPIIGADVLV----------QNELCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 124 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E G+I+L+GG +G + + +++ + + + + F D Y+ L Sbjct: 125 DVPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTL 183 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D ++LA +LP+VATN+ FL ED+EAH++ +A+ + R Sbjct: 184 TRTGRPDEEHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 243 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ + + Sbjct: 244 PKNYTSQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGE-----YFLPKFPTGD 298 Query: 305 KEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE L + +Y +RL EL+VI +M F GYFLIV Sbjct: 299 LSTEDYLVKRAREGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVM 358 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 359 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 418 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 419 FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 478 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 479 DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 537 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 538 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 597 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DDH+++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 598 DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 657 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 658 SGMVDNFIDRKHGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 717 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAY Sbjct: 718 ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAY 777 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F Sbjct: 778 ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 837 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ Sbjct: 838 VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 897 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L Q+L++ + + K+ ++F T + + + + Sbjct: 898 SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 957 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LG Y S HP+ Y L +E RG + +VV+ + Sbjct: 958 TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVNTRI 1017 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+ IG T + + + F Sbjct: 1018 AVTKKGNHIGIATIDDRSGRLDLTLF 1043 >gi|157413280|ref|YP_001484146.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9215] gi|157387855|gb|ABV50560.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9215] Length = 1165 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 377/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K I+PI Sbjct: 3 FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ + + +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I S L + ++GLI+ T G I +A VAE + +KK+F D Y+ + Sbjct: 119 SRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFSDDFYLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +++++ H++ ++ATN++ +LS D EAHD L+ V ++S + R Sbjct: 178 QDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T Y+K+ +EM+ +F D + ++ V S ++V + K + Sbjct: 238 LRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLNE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + L + GL RL + + Y++RL EL +I M F YFL+V D+ Sbjct: 298 DTDSFSLLTQLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP R SMPD D DFC Sbjct: 356 IKFARDNSIPVGPGRGSAAGSLVAYSLQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475 Query: 484 AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + D FR+ + D V + ++++ ++EG + HAAG+VI PL Sbjct: 476 GKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 +LVP+ R+ +TQ++M IE GL+K DFLGLK LT++ K++ + Q G +++ Sbjct: 536 DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTVSLINQSTGKIINV 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 +P +D +T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 595 DDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRKNG EK+ HP I +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + F+ G+ K G+++ +A ++F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMVKHRNIFVKGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K H+PV ++AA +++ + +K++++ + NI+++ PS+N VDF + +N+I Sbjct: 775 AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMNIEVISPSINFSGVDFTIKNNQIL 834 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894 + L+AIK +G + R+I+E F+SL D C R+ S LN+R LESL+ GALD F Sbjct: 835 FGLSAIKNLGESAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGALDEFS 894 Query: 895 -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSV 950 +R QLL L+++ +A ++R + N+F ++ + L+K + Sbjct: 895 NDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDDYSLIE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+++LGFY S HPL + + + T + L M+ +Q TR Sbjct: 955 KLKLEKQLLGFYLSDHPLKHLAKPAKLISPINISQLEETKDRTKVSLVVMIPDLKQITTR 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG R+ V + + EA FP Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|282856832|ref|ZP_06266091.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455] gi|282585342|gb|EFB90651.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455] Length = 1155 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 356/1036 (34%), Positives = 570/1036 (55%), Gaps = 28/1036 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +FVHL VH+ YSLL+GA+ ++ + A PA+A+TD ++ A+EF Q+ + Sbjct: 1 MSAEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIGC++ + ++LL EGY LI+LVS Sbjct: 61 AGVKPIIGCEMYVSPDG-------IDNKEKKYNHLLLLAENDEGYHNLIKLVSIANTR-G 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L + ++GLI + +G I R + A +R ++ +FG + + Sbjct: 113 FYYKPRVDHQLLAQY-SKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFF 171 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + ++ ++ ++++A + PL+ATN++ +L+ DY+ H++L+ V V++ Sbjct: 172 LEIMPNQLPEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITD 231 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + ++ + + + + K Sbjct: 232 PGRMSFRVNDFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIP 291 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L A +GL+ R + +Y RL +EL +I +MKF GYFLI+AD Sbjct: 292 EGMTLDTYLEKMARSGLKER-----LGVEVIPDEYENRLSYELGIIKQMKFPGYFLIIAD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I K + IP+GPGRGS AGS+ AY++ IT++DP+RF L+FERFLNP+R+SMPD D D Sbjct: 347 VIGACKSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDIDTDV 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RD +I+YV +KYG E V+QIITFG +++K A++DVGRA+ MPY+ V+++ L+P Sbjct: 407 SDKGRDRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANLVP-- 464 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +A+ ++ +D + +LL + +EGL RH S HAAG+VI +PL+ L Sbjct: 465 DGAKSIKEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKPLTDL 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601 VP+ + TQF+M + GL+K DFLGL+TL++L++++ + + G DL+ + Sbjct: 525 VPVRQIE-EGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTLGDLNRL 583 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD E Y LL TLGIFQLESSGMR+ ++ MQPD D++A+++LYRPGP+++ +V Sbjct: 584 PLDDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLESGMVD 643 Query: 662 NNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 E++ +HPL++P+L ET GV++YQEQVM+ A L+GY+L AD+LRRAMGKK Sbjct: 644 QYVNCKHGEEVHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRRAMGKK 703 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K MD+ + FI+GA+KNGI IF+++ KFA YGFNKSH+AAYA+++YQTAW+K Sbjct: 704 KKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQTAWLK 763 Query: 781 THYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 HYP EF+AA ++ ++ +++ ++ ++ R I ++ P +N DF N I + L Sbjct: 764 VHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKNEIRFGL 823 Query: 840 AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 + VG I +A + PF DF RVD + + V+ESL+ AGA D +R Sbjct: 824 GGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDSLNSNR 883 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 QLL SLDN+ + A ++ ++F T D+ L + N + + E E+ Sbjct: 884 KQLLTSLDNLFEVAS--RRDSQGDQGSLFGDM--TSEDQPELAEVDDLNITEKLEMEKEA 939 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017 LG Y SGHP D ++ + + + A ++ Q+K T++G +G Sbjct: 940 LGMYISGHPFDGFRRLAAQKANARIADLPYWKSDTTTPTFAGLLSGWQEKMTKRGDAMGI 999 Query: 1018 VTFSEPAKEYEANFFP 1033 + + E + FP Sbjct: 1000 FSIDDGEDEIKVICFP 1015 >gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli] gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli] Length = 1166 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 408/1051 (38%), Positives = 607/1051 (57%), Gaps = 43/1051 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SF+HL +HS YSL++G + + ++DK PA+A+TD +NLF+ ++F Q A GI+ Sbjct: 2 SSFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + ++LL GY+ LI+L+S+ YL + + Sbjct: 62 PIIGAECRVKDD-----------QEGQEYQLILLCQNLRGYRNLIQLISKSYLENAKEGQ 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W +EGLI L+G G I + +A L + +LF +R Y+ +QR Sbjct: 111 PLLQKDWFSIY-SEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQR 169 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + V LA + +P+VATN FL ED+EAH+ + + + +++ R + Sbjct: 170 LGRPLEEEYIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLK 229 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305 T YL++ EMV +F+D+P AL N+VEIA+RC+ +++ A LP F E +K Sbjct: 230 FYTNQQYLRSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPEGMSAEKL 289 Query: 306 -------------EEENELR---NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++ LR K + + Y RL EL VI Sbjct: 290 LTQEAQSGLTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQVIN 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F+ YFLIVADFI+WAKKN IPVGPGRGSGAGS+ AY L IT +DPLR+ LLFERFLN Sbjct: 350 SMGFASYFLIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC + RD VI YV +YG V+QIIT+GS+ A+A +RDVGR L PY Sbjct: 410 PERISMPDFDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLGYPY 469 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 VD++ KLIP + + +A+ + + + + L+++++KLEGL R+ HA Sbjct: 470 GMVDKIAKLIPFELGITLE-KALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVGKHA 528 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G+VI L P+Y + +TQF+ IEK GL+KFDFLGL+TLT++ + + Sbjct: 529 GGVVIAPSQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTIIDWVVQAI 588 Query: 590 AQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 ++ D+ IP DD +T+ LL T IFQLES GMR ++ + PD ++I+A Sbjct: 589 NKKKKPEEELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPDSFDEIVA 648 Query: 646 LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 LV+L+RPGP+ + + + NRK+G+ + HPL++P+L T G+I+YQEQVMQIAQ+L+ Sbjct: 649 LVALFRPGPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVMQIAQVLA 708 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKK EEM +Q+ F+ GA + GI +++A IF+L+ KFADYGFNK Sbjct: 709 GYTLGAADLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKFADYGFNK 768 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+ AYA++SYQTAW+KTHY EF+AA ++ +MD+ +K+ F + R N+ I+PP +N Sbjct: 769 SHSVAYALVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFLDECRAMNLPILPPDINC 828 Query: 824 PCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 F V D I Y L AIKG+G ++E F L D C RVD +KLNRR Sbjct: 829 SEYKFTVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDFQKLNRRG 888 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +++L+ +G+LD FG +R LL++++ + A +++ ++ F E + S+++T + Sbjct: 889 IDALICSGSLDSFGLNRATLLENVEAALQAAIQKSLTKSSGQKDFFGLEMVSHSNQMTHQ 948 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 K R + E+ LGFY SGHP++ Y L ES+ G+ I +A V Sbjct: 949 K--DWPKLERLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESM-IKSGHTITIAGWV 1005 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G R+ +T + E F Sbjct: 1006 LNIRSLWTKRGDRMAILTLEDTNGRLEVTLF 1036 >gi|87302218|ref|ZP_01085043.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701] gi|87283143|gb|EAQ75099.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701] Length = 1179 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 383/1056 (36%), Positives = 583/1056 (55%), Gaps = 40/1056 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ A PA+A+TD ++ A+E + AAGI+P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPQMVERAVALGMPALALTDHGVMYGAIELLKLCQAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + +G+ +V+L GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPWVKGERR----YHLVVLAKNDTGYRNLVKLTSLSHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ EGLI+ T G I +A VA + + FG Y+ Sbjct: 118 FSRACIDKQLLEQ-HREGLILATACLGGEIPQAILKGRQDVARDVARWYHQRFGADFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + L+ATN++ +LS D EAHD L+ V +V+ + Sbjct: 177 IQDHGSPEDRIVNVELVRIARELGIELIATNDAHYLSSADVEAHDALLCVLTGKLVTDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ +EM +F+D PE + + + ++ + + + + + Sbjct: 237 RLRYTGTEYIKSEAEMGRLFADHLEPEVVAEAIANTAAVAEKVEAYDILGRQQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L + AGL RL G+ Y +RL FEL V+ +M F YFL+V D Sbjct: 297 DGHTAVSYLAEVSEAGLRQRLHLGSSDP--IDPLYGERLAFELQVMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIEYVTQRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + + FRE D V R +++++++EG + HAAG+VI P Sbjct: 475 RGKPAKLKEMIGPESPAPEFREKYENDAQVRRWVDMARRIEGTNKTFGVHAAGVVIAAEP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+LD + Q G ++D Sbjct: 535 LDSLVPLQRN-NDGQVITQYFMEDVEAMGLLKMDFLGLKNLTMIDKTLDLVEQCSGERID 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDDLPPCDDDTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I P ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFACPALEPILKETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + +F+ GA+ G+S +A +FE + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQKHRSQFVEGATARGVSAAVAEALFEQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ + +K++++ + + I++MPP +N +DF +I Sbjct: 774 TAYLKAHYPVAYMAALLTVNASSTDKVQRYIANCQAMGIEVMPPDLNASGIDFTPKGEKI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++EA D PF SL D C R+ + +NRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLLEARVQDGPFASLADLCDRIPTTLMNRRALESLIHCGALDGL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---------------HEKGTFSDK 937 +R QL+ LD + +A ++R + N+F S Sbjct: 894 EPSANRAQLMADLDLVLDWASSRARDRASGQGNLFDLFATPGEAAGSAAAEPGPANQSTA 953 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + + E+ ++GFY S HPL +R + + + Sbjct: 954 PKAAPVADYPPKEKLRLEKELVGFYLSDHPLRQLARPIRMLSPISLGRLEEQADKARVSV 1013 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 AM+ +Q TRKG R+ + + + E FP Sbjct: 1014 VAMLPEVRQVTTRKGDRMAVLQLEDLSGSAECVVFP 1049 >gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA] gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1] gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA] gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1] Length = 1159 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 398/1048 (37%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD +++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPKSFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1] Length = 1174 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 409/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I L +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A AE L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 174 RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ A GLE + Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + +++ Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV +G Sbjct: 829 NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932 ALD G +R LL +L K A+ + H ++F + Sbjct: 889 ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 DIDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|320155607|ref|YP_004187986.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O] gi|319930919|gb|ADV85783.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O] Length = 1143 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 412/1031 (39%), Positives = 603/1031 (58%), Gaps = 37/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ ++AA PA+A+TD NL ++F A GI+PIIG + Sbjct: 1 MVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GY+ L L+S+ YL + I WL E+ + Sbjct: 57 ------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+G +G I +A + ++ E + +++ F DR Y+ L R D Sbjct: 110 EGLIILSGARNGEIGKALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA ++LP+VATN +F+ +E ++AH++ +A+ + RP+ +P YL+ E Sbjct: 170 IELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ E L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTVRLWEYF-----LPAFPTEGMAETEFLVMKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RL EL+VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E AD V L+++ + LEG R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 ALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R V + IP DD ++ + Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRI 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 704 MAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + + ++PP +N+ F V + I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L DFC+R+D KK+N+RV+E L++AGALD G R L+ Sbjct: 824 GVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 SLD+ K A + ++F + + + V E E+ LG Sbjct: 884 ASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPWPEKVWLEGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHP++ Y L K +++ T R ++ LA +V++ + T++G+RIG +T Sbjct: 944 YLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGTRIGIMTLD 1003 Query: 1022 EPAKEYEANFF 1032 + + E F Sbjct: 1004 DRSGRMEVMLF 1014 >gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 1177 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 412/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ ++GL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLEGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + LP+VAT+ + F++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSREGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 LS +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIANNLVVLPPDINLSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A + +F + L + Sbjct: 886 GAFDSLNANRAQLLASVPLAMEAAD--QAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|52841197|ref|YP_094996.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1148 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 427/1039 (41%), Positives = 626/1039 (60%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A A+A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+QE ++GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIQEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R + Sbjct: 173 GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|87306887|ref|ZP_01089033.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] gi|87290260|gb|EAQ82148.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] Length = 1181 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 352/1057 (33%), Positives = 566/1057 (53%), Gaps = 41/1057 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL H+ YSLL+GA S+ ++ + A+AITD NL AL+F + A Sbjct: 1 MSDR-RFVHLHCHTHYSLLDGAGSIPRLVGRAKDHGMNALAITDHGNLHGALQFYRACKA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 A I P+IG + I + + + + + LL G++ L++L S YL + Sbjct: 60 AEINPVIGYEAYIAPGSRFEKSGSQR---DSNYHLTLLAQNKIGFRNLVKLSSAAYL-EG 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEK----RLLTFKKLFG 179 RI L++ +EG+I L+G S + S++ EK F+++F Sbjct: 116 FYFKPRIDKELLEKY-SEGIICLSGCVSSEFSKTILRGTSTEELEKEGANVASWFQRVFK 174 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR ++ + + R + V +A +PLVAT+++ ++ ++D EA DV++ + Sbjct: 175 DRYFIEIMNNGLDIQRMQLEGAVDIANKIGVPLVATSDTHYVDQDDAEAQDVMLCINTGK 234 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + +R R+ +L+++ +M + F L +A+ + EIA L++ P + Sbjct: 235 FRTDTNRMRMENDQFFLRSQEQMYADFPRLEDAVARSQEIADTVDLDLELGKRHFPTYTL 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 +K + LR + GL+ R + + G ++ RLD EL VI+R+ F Sbjct: 295 P----PEKTADGYLRELCIQGLKERYEGNEEMLPGGELSEVVMARLDRELGVISRLGFPN 350 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DF+ A+K NIP RGSG G++ YAL ++ + P+++ LLFERFL+ +R+ Sbjct: 351 YFLIVWDFVVEARKQNIP-ATARGSGVGAIVCYALYMSHVCPIKYDLLFERFLDENRLEA 409 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF ++RR VIRYV++KYG + VAQI TFG+L A+AA++DVGRAL +P +V+ + Sbjct: 410 PDIDIDFDKERRGLVIRYVKDKYGEDNVAQIGTFGTLAARAAIKDVGRALGLPLDRVNAI 469 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 ++P + AI ++A D +L ++ K+EGL R+ THAA +VI Sbjct: 470 TGMVPETLGIKLK-TAIETSEELKQAYENDGEAREVLSLAMKIEGLARNVGTHAAAVVIA 528 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 DRPL++ VP+ R + +TQ++M +E AGL+K DFLGL+ LT+L+ ++D + R Sbjct: 529 DRPLTEYVPLCRVTGKEDLITQWSMNDVEDAGLLKMDFLGLRNLTILRNAIDLIETREGK 588 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D+ +P DD ET+ LL T G+FQLES G+R L M+PD DIIA +LYRPGP Sbjct: 589 PFDIHKMPLDDEETFALLRRGETKGVFQLESGGIRDLLRRMKPDSFLDIIATNALYRPGP 648 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 ++ +V Y KNG++ HP+++ +L+ET GV++YQEQVM+I L L++A Sbjct: 649 LEGGMVDEYIEVKNGRKAAEYKHPVLEKILEETNGVMVYQEQVMRILNQLGDIPLAKAYT 708 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 +A+ KK + + + +E+F+ GA + G++K A +E++ KFA YGFNKSH+ AYA++ Sbjct: 709 CIKAISKKKESLIQQNREQFMIGAVEKGLTKKEAEEFWEMIVKFAGYGFNKSHSTAYALV 768 Query: 773 SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 +YQTA++KTHYP EF+AA ++ + + + + +D+ + I ++ P VNT V Sbjct: 769 AYQTAYLKTHYPKEFMAALLSGDISGRNFKTKDALVEHMEDSERMEIDVVAPDVNTSDVQ 828 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D +I ++L+AIKG G A I+ A D PF + DFC RVD+ + NR +E+L+ Sbjct: 829 FAVVDGKIPFALSAIKGCGGGAAEAIVAARRKDGPFTDIFDFCERVDASQCNRAAIETLI 888 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKF 943 AGA D +R QL LD + +R +N+FA G S + L Sbjct: 889 KAGAFDSMSTNRAQLSSVLDKAIQSGAAALADRKAGQKNLFAAMEEASGAASKAVKLPDV 948 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 N + E+ VLGF+ + HPL Y + ++ + M+ S Sbjct: 949 EEWNEREKLLYEKEVLGFFLTSHPLAEYGQSFAIYCTHTTTDIPQMKDKQDVVMGGMITS 1008 Query: 1004 KQ-------QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + ++ + +P Sbjct: 1009 IKLAHTKRARPGS-NNTKYANFDLEDVNGAIRCIMWP 1044 >gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440] gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440] Length = 1174 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 409/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +SL++G + + + + PA+AITD +N+ S ++F + A AGI+PI Sbjct: 5 FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L + G P + I L +GY+ L EL+SR + Q V Sbjct: 65 CGADLWLA----------GADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVI 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ +EGLI L+ G G I A AE L + +F +R YV +QR + Sbjct: 115 LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 R D V LA PLVATN+ F+ + D++AH+ + + + RPR Sbjct: 174 RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM +FSDLP+A+ NTVEIA+RC+ +Q+ LP F I + Sbjct: 234 SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289 Query: 309 NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR+ A GLE + Q Y RL FEL++I +M F GYFLIV DF Sbjct: 290 DYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC Sbjct: 350 IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI YV YG V+QIITFG++ AKA +RDV R Y DRL K+IP + Sbjct: 410 MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + R+ D + +++ KLEG+ R HA G+VI L+ Sbjct: 470 GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + +++ Sbjct: 529 PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD +TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + Sbjct: 589 DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648 Query: 659 VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + + + P+L T G+I+YQEQVMQIAQ+++GY+L AD Sbjct: 649 MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH+AAY + Sbjct: 709 MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 +SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VN F V Sbjct: 769 VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D RI Y L AIKGVG I+EA A PF L DFC R+D K++N+R L++LV +G Sbjct: 829 NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888 Query: 890 ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932 ALD G +R LL +L K A+ + H ++F + Sbjct: 889 ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K R + E+ LG Y +GHP+D Y+ +R+ + + + Sbjct: 949 DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A M+++ + K +KG ++G+VT + + EA+ F Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046 >gi|33861502|ref|NP_893063.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634079|emb|CAE19404.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1165 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 373/1043 (35%), Positives = 593/1043 (56%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ +IA+TD ++ L+ +K + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQVSKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKSKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ I + +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYIINGSIDDPQPK----KEKRYHLVVLAKNHTGYKNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I S L++ +GLI+ T G I +A VAE + +K++FGD Y+ + Sbjct: 119 SRPCIDKSLLEKY-NDGLIISTACLGGEIPQAILKGRIDVAENTAVWYKRIFGDDFYLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +++++ H++ ++ATN++ ++S D EAHD L+ V ++S + R Sbjct: 178 QDHGSIEDRIVNVELIRIGKEHQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T Y+K+ EM+ +F+D + +++ + S ++ + K Sbjct: 238 LRYTGTEYIKSEDEMLRLFNDHIDKESIKEAINNTVEVSQKIEEFELFGTYRMPKFPLKE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + + L GL RL + + + Y++RL EL +I M F YFL+V D+ Sbjct: 298 ETDSLSFLTKITKQGLLSRLNKNNLD--EIDEIYKKRLTSELKIIDDMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ ++IPVGPGRGS AGS+ AYAL IT+IDP++ LLFERFLNP R SMPD D DFC Sbjct: 356 IKFARDSSIPVGPGRGSAAGSLVAYALQITNIDPVKHGLLFERFLNPARKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKLIPVVR 475 Query: 484 AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + D FR+ L D V + ++++ ++EG + HAAG+VI PL Sbjct: 476 GKPYKLNEMIDKKSPSPEFRDKYLKDIKVKKWIDLALRIEGTNKTYGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598 LVP+ R+ +TQ++M IE GL+K DFLGLK LT++ K++ + G K+++ Sbjct: 536 DMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTGQKINI 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 +P D++T+ L+ G+FQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 595 DKLPPKDNKTFDLIGRGDLEGVFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRKNG EKI HP I+ +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKNGSEKIDFPHPFIESILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + FI G+ K G+ K IA ++F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMVKHRNIFIEGSCKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYPV ++A+ +++ + +K++++ + I+++ PS+N +DF + ++I Sbjct: 775 AFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINLSGIDFTIKKDQIL 834 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894 + L+AIK +G + R+I++ F S D C R+ S LN+R LESL+ GALD F Sbjct: 835 FGLSAIKNLGDSAIRNIIDNRNKLGVFKSFSDLCDRLPSNILNKRNLESLIHCGALDEFS 894 Query: 895 -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSV 950 +R QL L+ + ++A ++R + N+F + + +L K + Sbjct: 895 ENNNRAQLFSDLEYVMEWASSRNRDRISGQGNLFDSISKNDTKEFSLSQGSKVEDYSLIE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+++LGFY S HPL + + + + + L M+ +Q TR Sbjct: 955 KLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELKQITTR 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG R+ V + + EA FP Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037 >gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP] gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP] Length = 1159 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 399/1048 (38%), Positives = 591/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSFQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRG- 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYF-----LPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661] gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661] Length = 1160 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 414/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G ++ K A+ PAI ITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + + + +L + GYQ L L+S+ Y Sbjct: 60 QGVKPIIGADFKVS----------SDAMGDDLGQLTILAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+G EGLI+L+GG G + + + + L +++ F +R Y+ Sbjct: 110 GAAGPIIDRDWLIELG-EGLILLSGGRRGDVGQMLLRGNHAQVAECLAFYQQYFPERYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA + +P+VATN FL D++AH++ +A+ + Sbjct: 169 ELIRTGRQDEETWVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL+ EM +FSD+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPKNYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RL A + +Y +RL+ ELNVI +M F GYFLI Sbjct: 284 GEMTTEDFLVMKSREGLEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPEPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDENGNFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQGEP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD +++ +L T +FQLES GM+ ++ ++PD ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI +AV IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYQ 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG +EA + F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 V +GA D G R L+ +L K A K ++F + + + Sbjct: 883 VMSGAFDRLGPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYADIK 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003 V+ + E+ LG Y +GHP++ Y + + G ++ T RG +VV+ Sbjct: 943 RWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMTMAVGLVVA 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + E F Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031 >gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20] gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae RdAW] gi|1169392|sp|P43743|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd KW20] gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae RdAW] Length = 1159 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 399/1048 (38%), Positives = 591/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRG- 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYF-----LPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A +VV+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12] Length = 1164 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 489/1053 (46%), Positives = 675/1053 (64%), Gaps = 43/1053 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL++H+ YSLLEGA+ L + D +AA + PAIAITDTNN+F+ALE S+ Sbjct: 1 MTQPPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGIQPIIGCQ+D+ G+ P P +VLL T GY+ L+ L + +Y +D+ Sbjct: 61 AGIQPIIGCQVDVA----FDPAAPGERPRAPAP-VVLLAQTEAGYENLMALNTCLY-VDK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q +I + L G++ LI LTGG GP+ R A+ + ++FGDRLYV Sbjct: 115 GGQLPQITVEELAANGSD-LICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYV 173 Query: 185 NLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VS 241 L RH G E + LAY LPLVATN+ F YEAHD L+ +A Sbjct: 174 ELHRHPGDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQ 233 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 Q R R+T HY K+++EM ++F+DLPEALENT+EIARRC+F Sbjct: 234 QAPRRRLTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRD--------PILP 285 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++E ELR ++ GL+ RLA I ++Y +RL+FEL++I M F GYFLIVA Sbjct: 286 RFAEDEVEELRRQSREGLKARLA--VIPHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVA 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID Sbjct: 344 DFIKWAKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDID 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRR+EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP Sbjct: 404 FCMDRREEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 463 Query: 482 DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + PVS++ + D+ R E A+ V+RLL+ ++EGL R+ASTHAAG+VIGDRPL Sbjct: 464 EGVKPVSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLD 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--- 597 +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++ + G + Sbjct: 524 KLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAA 583 Query: 598 ---------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ IP DD +Y L + T+ +FQ+ES+GM AL M+P CIED Sbjct: 584 DGTELYSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIED 643 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP++NI Y KNG + +HP +D +L ETQG+I+YQEQVMQIAQ + Sbjct: 644 IIALVALYRPGPMENIPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEM 703 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL AD+LRRAMGKKI+E MD ++ +F++GA++NG+ K A+ ++ LL KFA+YGFN Sbjct: 704 AGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFN 763 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821 KSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ ++I+PP V Sbjct: 764 KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCV 823 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 N F V + ++ Y L A+K VG ++ DKPF +L D RVD K++ +R Sbjct: 824 NRSRASFSVAEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKRVGKRP 883 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE L AGA D +R ++ QSLD + Y+ + + R + ++F E G + + Sbjct: 884 LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG-EAGEDLPEPRIL 942 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAA 999 + R E + +GFY SGHPLD Y L++ G+ E + G + ++A Sbjct: 943 PCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +Q++K+ +G+R +V S+P YE F Sbjct: 1003 TIAGRQERKSARGNRFAFVQASDPTGLYEVTVF 1035 >gi|296129453|ref|YP_003636703.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296021268|gb|ADG74504.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] Length = 1187 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 348/1072 (32%), Positives = 529/1072 (49%), Gaps = 47/1072 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + PSFVHL VHS YS+L+GA + +LD+ Q A+AITD LF A EF Q Sbjct: 1 MAAGGTEDPSFVHLHVHSEYSMLDGAARIGEMLDEAKRLGQTAMAITDHGYLFGAFEFWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 KA GI+PIIG + + + + LL T EG Sbjct: 61 KATERGIKPIIGVEAYVTPGTSRFDQNRVRWGEAHQAADDVSARGAYTHLTLLSRTTEGM 120 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L + S + Q + R+ L +GLI +G SG I A + Sbjct: 121 HNLFRMGSLASVEGQMGKWPRMDRELLSRY-ADGLIATSGCPSGEIQTRLRLGHVDEALR 179 Query: 170 RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + +FG + +V + H +R ++++A P+VATN+ + EED A Sbjct: 180 AAGELQDIFGKEHFFVEVMDHGLEIERRVIKDLLRIAEGIGAPIVATNDLHYTREEDAHA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 H+VL+AV + + + + V +++ E + + Sbjct: 240 HEVLLAVQSGSTLDEPTSDQGGSRFAFGGTGYYVKSAAEMRRTWAELPEACDNTLLVAEQ 299 Query: 288 HAPILP---RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 ++ + + E++ + GL R G R++ D+E Sbjct: 300 CEVKFNTGANYMPRFPVPAGENEDSWFVKEVENGLLRRY------HGAIPDHVRKQADYE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 VI ++ FSGYFL+VADFI WAKK I VGPGRGS AGS+ +YA+ IT++DPL L+F Sbjct: 354 TGVITQLGFSGYFLVVADFINWAKKQGIRVGPGRGSAAGSMASYAMGITELDPLEHGLIF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+S PD D+DF + RR EVIRYV KYG +RV QI+T+G+++AK AL+D R Sbjct: 414 ERFLNPERVSWPDVDVDFDERRRGEVIRYVTEKYGDDRVCQIVTYGTIKAKQALKDASRV 473 Query: 465 LQMPYSQVDRLCKLI-PNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515 L P++ ++L K + P + A+ FR+ ADP R+LE + Sbjct: 474 LGFPFAMGEKLTKAMPPPVMGKDIPLSGMYDPEHPRYAEADEFRQVVAADPEAQRVLETA 533 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LE L R HAAG+++ PL ++P+ + + +TQF+ E GLIK DFLG Sbjct: 534 RGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKRPQDGAIITQFDQPASESLGLIKMDFLG 593 Query: 576 LKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT+L +L+ + G + + DD TY LL TLG+FQL+ MR L Sbjct: 594 LRNLTILDDALENIVMNGKPPILIEEVALDDPPTYELLGRGDTLGVFQLDGGPMRSLLRQ 653 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKE----TQGV 688 M+PD ED+ A+++LYRPGP+ N ++I IHP + L++ T G+ Sbjct: 654 MRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQEIEPIHPELVEPLEDVVGVTYGL 713 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQV + AQ L+GYSL +AD+LRRAMGKK KE +DK+ F +G + G S Sbjct: 714 IVYQEQVQRAAQKLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQAGMRERGYSDAAIQA 773 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L FA Y FNK+H+AAY V+SY TA++K ++P E++AA +T D+ +K + + Sbjct: 774 VWDVLVPFAGYAFNKAHSAAYGVVSYWTAYLKANFPTEYMAALLTSVRDDKDKSALYLGE 833 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867 R I ++PP VN+ +F I + L A++ VG I+ A + F S D Sbjct: 834 CRHMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVDAIVAAREEKGAFTSFTD 893 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V + N+R +ESL+ AGA D G++R LL + V++ ++F Sbjct: 894 FLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLLVHEQAVDAVIDVKRKEATGQFDLF 953 Query: 928 AHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 A G + + + R E+ +LG Y S HPL + +L Sbjct: 954 ADLGGGDETGTGIAVQIPDLPDWDKKQRLAFEREMLGLYVSDHPLSGLEHVLSAQADVSI 1013 Query: 984 EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + +A +V S Q+K +++G+ VT + E FF Sbjct: 1014 ATLNADTERPDGSTVVVAGLVTSLQRKMSKQGNPWAAVTLEDMEGGVEIMFF 1065 >gi|242310657|ref|ZP_04809812.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489] gi|239523055|gb|EEQ62921.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489] Length = 1172 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 369/1061 (34%), Positives = 596/1061 (56%), Gaps = 45/1061 (4%) Query: 5 LEKSPS---------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55 + K+P F HL +H+ YSLL+G + + +I ++AITD N+F A Sbjct: 1 MSKTPDEVISQDKIPFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGA 60 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +EF + GI+PI+G + + + + + + + L +GY+ L+ L Sbjct: 61 IEFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLQGYKNLMYL 114 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVA 167 S+ L RI L+E +EGLI + +G + + A Sbjct: 115 SSQACLYG-YYMKPRISKKMLRE-HSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERA 172 Query: 168 EKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 ++ L +K++FGD Y+ L RH ++ + Q++Q++ + ++ATN++ + ++ D Sbjct: 173 KEVALEYKEIFGDDFYLELMRHGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDST 232 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A +V + + +R R T + Y+K+ +M ++ DLPEA+ NT EIA +C+ L Sbjct: 233 AQEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLEL 292 Query: 286 QVHAPILPRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + P P F + + K GL+ RL + Q+Y++R Sbjct: 293 HLGDPTPPSFKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLEN---VESSRHQEYKER 349 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ E+ +I +MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDP+++ Sbjct: 350 LEKEIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKY 409 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV +KYG VAQ+ITFG ++AKA +RD Sbjct: 410 DLLFERFLNPERVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRD 469 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 V R + MPY + D KLIP + + + + +E DP ++ + + LE Sbjct: 470 VARVMGMPYGEADAFAKLIPKELDITLEKA-FEKEPKIKELIDKDPLAKKIWDFAVVLEN 528 Query: 521 LYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 R+ THAA +VI + L P+YR R + TQ++MK++E LIKFDFLGLKTL Sbjct: 529 TKRNPGTHAAAVVIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTL 588 Query: 580 TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 TL+ +L + R ++D + +D + Y L + TLGIFQ+ESS + + ++P Sbjct: 589 TLVDDALKLIKNRHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPS 648 Query: 639 CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 EDIIA+++L RPGP+++ + + +RK+GK IV + P ++ +L+ T G I+YQEQVM Sbjct: 649 TFEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQVM 708 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL EAD++RRAMGKK + M K +F GA K G ++ A ++EL+ KF Sbjct: 709 QIVQKIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKF 768 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSH+AAYA+I+++TA++KT+YP EF+AA +T E ++ +KI ++ ++A + +I++ Sbjct: 769 AGYGFNKSHSAAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKV 828 Query: 817 MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 +PP++ ++F V ++ I + L AIKG G I+E + F LEDF SR Sbjct: 829 LPPNIQKSELEFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSR 888 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D +K+N++ LE+ + +GA+DCFGY+R LL+ ++ + + A+ + + ++F + Sbjct: 889 IDPQKVNKKSLEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDSE 948 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + + LE + E E+ LGFY SGHPL+ YK I++ + + Sbjct: 949 EFTAIALELENKEEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINCAYTNQIQDIAE 1008 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++I L + K ++ G R G + + E F Sbjct: 1009 NSSILLVGSIEDVITKFSKSGKRYGILKLQDFYGSVELTIF 1049 >gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217] Length = 1166 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 497/1057 (47%), Positives = 681/1057 (64%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+VH+ YSLLEGA+ L + AA PA+A+TDTNN+F+ALEFS A Sbjct: 1 MSTSPRFIHLRVHTEYSLLEGAIRLKKLPSLCAAAGMPAVAVTDTNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+D G+ P P +VLL GY+ L++L S +YL Sbjct: 61 AGVQPIMGCQIDLDY----IALAPGERTKPPAP-LVLLGQNERGYENLMKLNSCLYLRGD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + LS L+ EG+I L+GG GP+ R AE + + FGDRLYV Sbjct: 116 G-SLPHVTLSELKR-HAEGVICLSGGPDGPVGRLLQAGQRPGAEALMQRLMRAFGDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH +R E +++AY LPLVATN+ F + YEAHD ++ VA Sbjct: 174 ELQRHPSDGGAPEAERLTERGHIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVADGA 233 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP HY K++ EM ++F+DLPEALEN+VEIA RC+F Sbjct: 234 YVDQSAPRRRLTPQHYFKSQDEMAALFADLPEALENSVEIATRCAFGCYKRD-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A AGL+ RLA I ++Y +RL+FEL +I M F GYF Sbjct: 286 PILPKFADDEVEELRRQARAGLQSRLA--VIPHAAPVEEYEERLEFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + VDRLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + Sbjct: 524 RPLDELVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKTGRPL 583 Query: 593 --------------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVAADGTELYQPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +++ SIHP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLKELESIHPSIDYILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG++K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVNKRKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLDWA 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 P VN F V D ++Y+L A+K VG + I +D+ F +L D RVD K++ Sbjct: 824 GPCVNHSEATFDVRDGVLHYALGALKNVGVEAMKLITAGRSDRSFATLYDVAQRVDLKRV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ +S++ + Y+ + + + + ++F E G + Sbjct: 884 GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSNQVSLFG-EAGDDLPE 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 L + R E + +GFY SGHPLD Y +LR+ +K +E A + Sbjct: 943 PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A +V +Q++K+ +G+R + S+ +E F Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGSFEVTIF 1039 >gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49] Length = 1118 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 414/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + WL +EGL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDPGWLDGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 LS +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A + +F + L + Sbjct: 886 GAFDSLNTNRAQLLASVPLAMEAAD--QAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGELKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|257468959|ref|ZP_05633053.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063207|ref|ZP_07927692.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313688883|gb|EFS25718.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1141 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 389/1036 (37%), Positives = 597/1036 (57%), Gaps = 35/1036 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+G +++ LD+ AIAITD NLF LE +KA GI+P+ Sbjct: 5 FVHLHLHTEYSLLDGVGKIDDYLDRAKVLGMQAIAITDHGNLFGVLELYKKAMKKGIKPV 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + L+ + +VLL +GYQ L+++ S Y+ R Sbjct: 65 IGLEAYVSEFSMLEK-------DGRIFHLVLLAENNKGYQNLLKISSESYIKG-FYYKPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I +L + +EG+I L+ G I R N S + ++ + + +FG D Y+ +Q Sbjct: 117 IDKEFL-KNHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQA 175 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + ++ LA H+L ++ATN++ +++E ++ D+L+ V VS + R R Sbjct: 176 NGVKGQTALNEKLYDLAQKHQLKMIATNDTHYVNEGEHTLQDILICVQTGAKVSDEKRMR 235 Query: 248 VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D + + + EA+ NTVEIA RC+ ++ P + C K Sbjct: 236 IETDELFLKSREQIIDGLGAKYLEAVNNTVEIAERCNVDIEFGKFKFPDYKIPSC---AK 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E LR GL R QG +R+++EL+VI +M ++ YF++V DFI Sbjct: 293 SIEEFLRKLVYFGLSKRYPQGLTVT------VLERVEYELSVIEKMGYAAYFVVVWDFID 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ+ Sbjct: 347 YAKRNRIPIGPGRGSAAGSLVAYALRITELDPLSYNLIFERFLNPERISMPDIDIDICQE 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YV KYG ++VAQIITFG+++A+AA+RDVGR + S++D + KL+P + Sbjct: 407 RRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTSLSKIDSVAKLVPFNATI 466 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 Q + + F+ L DP + ++++IS +LE RHAS HAAGIVI PL+ VP+ Sbjct: 467 ---QQTLNNVEEFKNMYLNDPEIQKVIDISARLENKVRHASVHAAGIVITKDPLTDTVPL 523 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604 Y D ++ + TQ+ MK +E GL+K DFLGL+ LT LQ+++D++ + G ++LS IP + Sbjct: 524 YSDNKNKIVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRAIDYIKEDLGEDIELSEIPLN 583 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 + Y +L+ T G+FQLES G+R+ L ++PD EDIIAL++LYRPGP+ + +V + Sbjct: 584 SKKVYEMLSRGDTSGVFQLESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFI 643 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +I+ HP ++ LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 644 NGKNGISEIIYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKNV 703 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + M++ +E+F+ + +NG +K A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K + Sbjct: 704 QIMEENREKFVERSMENGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAY 763 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y + A+ MT EM +VE I + +DA+ N+++ P VN F+V I +SLAAI Sbjct: 764 YMKHYYASLMTSEMSHVEDIAFYMEDAKAHNMKLHLPDVNRASSKFRVDKEGIIFSLAAI 823 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG + I+E + + + + EDF R LN++ LESL+ AGALD +R Q Sbjct: 824 KNVGEGVSAKILEECNENGDYKNFEDFVVRTRKHGLNKKALESLILAGALDSLPGNRKQK 883 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +S+D I YA K + N+F K + TL + + E+ LGF Sbjct: 884 FESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQVPEYSLEELLAREKEYLGF 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL---AAMVVSKQQKKTRK-GSRIGW 1017 YFS HPLD Y+ ++ + E ++++ ++ ++ T+K G + Sbjct: 943 YFSAHPLDNYRRLIEVYRLSKISELKELKEEKSVQIFRTCGILREIKKIVTKKTGQIMCL 1002 Query: 1018 VTFSEPAKEYEANFFP 1033 + ++ FP Sbjct: 1003 FELEDYYEKINCVVFP 1018 >gi|209522938|ref|ZP_03271495.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328] gi|209496525|gb|EDZ96823.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328] Length = 1219 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 382/1079 (35%), Positives = 594/1079 (55%), Gaps = 64/1079 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D K V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVLNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+E EGLI+ + G + +A +A + + +K++FGD Y+ Sbjct: 117 FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ + Sbjct: 176 IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R + YLK+ EM+ +F D E + + I Sbjct: 236 RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L A GL+ RL + YR+RL++EL ++ +M F+ YFL+V Sbjct: 296 PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D D Sbjct: 354 DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K+IP Sbjct: 414 FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473 Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523 P L+ + + F++A D + ++++ ++EG + Sbjct: 474 SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI +PL ++VP+ R+ +TQ+ M+ IE GL+K DFLGLK LT++Q Sbjct: 534 TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIEALGLLKMDFLGLKNLTIIQ 592 Query: 584 KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623 ++L++++Q +P D +TY +L G+FQL Sbjct: 593 RTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLFQL 652 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681 ESSGMRQ ++ ++P IEDI ++++LYRPGP+D I + NRK+ +E I H L++P+ Sbjct: 653 ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA++NG+ Sbjct: 713 LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T N +K Sbjct: 773 PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860 ++ + + + I ++PP +N VDF +NRI + L+AIK VG H++ + Sbjct: 833 VRAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ KNR Sbjct: 893 PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952 Query: 921 NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 N+F E + S + K + + E+ +LGFY S HPL Sbjct: 953 IGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +++A ++++ + T+KG R+ ++ + + +A FP Sbjct: 1013 GILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071 >gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH] gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH] Length = 1159 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 399/1048 (38%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810] Length = 1159 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 398/1048 (37%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+ +++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++MPP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVMPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|269138108|ref|YP_003294808.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202] gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202] gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60] Length = 1162 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 408/1051 (38%), Positives = 604/1051 (57%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL VHS YS+++G ++ K+AA PA AITD NL ++F A Sbjct: 1 MAE-PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G + + + +T + ++ +L EGYQ L +L+S Y Sbjct: 60 AGIKPLVGADVLV----------RSETMGDELSALTILACDNEGYQNLTQLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + I WL GLI+L+G G + + + + + + +++ F D ++ Sbjct: 110 GAEGPTIDRDWLIAYRA-GLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LPLVATN+ FL D++AH++ +A+ + Sbjct: 169 ELVRTGRPDEESYLHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +F+DLPEAL+N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L KA GLE L + Y +RL+ EL VI +M F GYFLI Sbjct: 284 GEMSTEDFLVKKAHEGLEERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R + L Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLD 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG++ +A++IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRV+E Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVME 882 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942 L+ +GA D G R L+ SL++ K A+ + ++F + + + Sbjct: 883 KLIMSGAFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEQSYGS 942 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001 + + E+ LG Y +GHP+ Y + + G ++ T RG +V Sbjct: 943 VPPWPVQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G+RIG T + + E F Sbjct: 1003 LGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033 >gi|219849373|ref|YP_002463806.1| DNA polymerase III subunit alpha [Chloroflexus aggregans DSM 9485] gi|219543632|gb|ACL25370.1| DNA polymerase III, alpha subunit [Chloroflexus aggregans DSM 9485] Length = 1260 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 355/1055 (33%), Positives = 532/1055 (50%), Gaps = 46/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G + I+ + A +IA+TD L+ A+EF + A AGI+P Sbjct: 3 DFVHLHVHSEYSLLDGYATTKGIVQRAADLGMDSIALTDHGVLYGAMEFYEAAKKAGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + I +G ++LL GY+ L++L +R +L GK Sbjct: 63 IIGVEAYIAPGSLSDPMTKGAK---NYFHLLLLAQNETGYRNLVKLTTRAHLDGMGKGVF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L+ EGLI+ + +G + A + ++ L G DR Y+ Sbjct: 120 ARPRIDRHLLETYH-EGLIVTSACVAGELLHHLKHGDRHTAVETAAYYRDLLGPDRYYIE 178 Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV--- 240 LQ H ++V++A +PLVAT+++ F+ ED E +MA+ + Sbjct: 179 LQLHDNTPELEPLNDELVRIARELGIPLVATSDAHFIHPEDKETQHKVMAMGMNMTYAEF 238 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + H + + E LENT I+ C L+ LP F E Sbjct: 239 CTRGYAMDESYHIMSGEAMWARFKRYGTEPLENTRRISDMCRLKLEFGRVQLPVFELPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G + Y +RL++EL+VI + F Y LIV Sbjct: 299 HD----AASYLRLVCEEGLMRRF------NGQPPETYLRRLEYELDVINQTGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ YAL ITD+DP++ LLFERFL+P+R+ MPD D Sbjct: 349 WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR E++ Y+ NKYG E VAQIIT+G+L AKAA+RD+GR L + +VDR+ KLIP Sbjct: 408 DFADSRRQEILDYIANKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P QAI ++ P + LL +QK+EG R THA G+V+ PL Sbjct: 468 SLPVGTTIAQAIERVPELKQIYETQPHLRELLIEAQKVEGRMRSVGTHACGVVVSRTPLE 527 Query: 541 QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 +LVP+ R + + + F + K GL+K D LGL L+++ ++L ++ Q ++ L Sbjct: 528 ELVPLQRTTKDEHALMAAFEGATLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + L T +FQLES+GM + L +QP +ED+ A+V+LYRPGP++ I Sbjct: 588 DEIPLDDPKVFAALGRGETKNVFQLESAGMTRYLMQLQPTRVEDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY K+ +I +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ Sbjct: 648 PVYIQNKHNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE M + + F G + GISK +A ++EL+ FA Y FN+ HA Y ++SYQTAW Sbjct: 708 KKNKELMAENEAIFKQGCQRKGISKEVADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K +YPVE++ A +T +E + K +AR+ + ++PP VN F + Sbjct: 768 LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLSPPLP 827 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 D I + L AIK VG I+ A A PF SLED C+RVD LN+R LESL Sbjct: 828 EGVKYDRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFRSLEDLCARVDRHALNKRTLESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944 + AGALD SR Q L LD +K R ++F + + + + Sbjct: 888 IKAGALDSLPGSRRQKLAILDQAINAGVEAQKARDIGQSSLFDIFGESNTGSPNVARIPL 947 Query: 945 ------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 E+ +LG S P+ + G+ G + Sbjct: 948 PIITETPAEQKEVLRWEKELLGLNLSDDPIAKALEGIDLTGVTDLGSLEEEHVGETLTFV 1007 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ ++ T+KG + T + E FP Sbjct: 1008 GVLSGVRRIATKKGDSMVVATLEDMTGSIEIVVFP 1042 >gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74] Length = 1144 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 418/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|119471146|ref|ZP_01613678.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7] gi|119445802|gb|EAW27084.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7] Length = 1163 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 423/1054 (40%), Positives = 589/1054 (55%), Gaps = 43/1054 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL+VHS +S+++G I+ K + PAIAITD N + F Sbjct: 1 MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + I +L GY+ + L+S Y Sbjct: 60 AGIKPIVGADFWL----------RSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL EGLI+L+G G + +A N+ V E + +K+ F + Y+ Sbjct: 110 VFHRPVIDREWLAN-HKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSEHYYL 168 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 169 ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +++ + + Sbjct: 229 RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGE-----YFLPDYPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L + GLE L + +Y +RL EL VI +M F GYFLI Sbjct: 284 GSLNIDEFLVKVSEDGLEERLQFLFPDEEDRKVKRVEYDERLAVELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + R +EA D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFEVEPRLQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++D R + Sbjct: 523 TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKD 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + H + P+L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG I+EA PF L DFC+RVD K+LN+RV E L Sbjct: 823 FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882 Query: 886 VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 ++AGALD G R LL SL + + A K ++F + + Sbjct: 883 IYAGALDKLGPEKNQAGRAILLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQA 942 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 K + + E E+ LG Y +GHP++ Y+ LR + T R A Sbjct: 943 FIKATGLTDNEWLEGEKDTLGLYLTGHPINQYRKELRYYTSGKLVDLQPTNRDVLSTAAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+S + +KG+R G +T + + + FP Sbjct: 1003 LVISARTLINKKGNRWGLITLDDKSARIDVRLFP 1036 >gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617] gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617] Length = 1144 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 418/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ + Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEED 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131] gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131] Length = 1144 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 405/1032 (39%), Positives = 598/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A+ PA AITD NL + F A AGI+PIIG ++ Sbjct: 1 MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYVE--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +L EGYQ L L+S Y G I WL + Sbjct: 58 -------SELLGDEISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 +GLI+L+GG G + + + + ++ L ++ F D Y+ L R D Sbjct: 110 DGLILLSGGRKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ ++ RP+ +P YL++ E Sbjct: 170 VELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ + + E+ L ++ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMKTEDFLVMRSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLEFLFPDEKIRAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +L IP D +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F + + + V + E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ T RG + +V+S + T++G+RIG T Sbjct: 944 YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + + F Sbjct: 1004 DDRSGRLDIMLF 1015 >gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1] gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7] gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70] gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1] gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7] gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70] gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180] Length = 1144 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7] gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7] gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431] gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010] gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357] Length = 1144 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens MBEL55E] gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E] Length = 1159 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 407/1049 (38%), Positives = 597/1049 (56%), Gaps = 40/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S+++G + ++ + A+A+TD N ++F +A Sbjct: 1 MPE-PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI+G + + + + LL GY+ + L+S+ Y Sbjct: 60 SGIKPIMGADVSV----------KSDLCGDEHFELTLLAKNNAGYKNITLLLSKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFGDRLY 183 I WL E EG+I+L+GG G + + ++ E + ++K F D Y Sbjct: 110 E-DVPYIDQDWLAEY-NEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYY 167 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 ++L R + ++LA H LP+VATN+ +FL ED+EAH++ +A+ + Sbjct: 168 LSLSRTGHNEEETYIKTALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDD 227 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RP+ + Y ++ EM +F+D+P ALENT+ IA+RC+ +++ + Sbjct: 228 PKRPKLYSDRQYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYF-----LPQFP 282 Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + E+ L +A GLE RL + Y +RLD EL VI +M F GYFL Sbjct: 283 TGELSTEDYLIKRAKDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFL 342 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF Sbjct: 343 IVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD+VI +V + YG V+QIITFG++ AKA +RDVGR L PY VDR+ KL Sbjct: 403 DVDFCMDNRDKVIEHVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + +A + + ++ +D V L+++++KLEG+ R+A HA G+VI Sbjct: 463 IPPDPGMTL-AKAFDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTL 521 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 522 ITDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMDRDGK 581 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +D++ IP DD E+++LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPG Sbjct: 582 PHIDINHIPLDDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641 Query: 654 PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+++ +V + + H + P+L+ T GVI+YQEQVMQIAQ L+GY+ Sbjct: 642 PLESGMVQNFIDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYT 701 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+ F GA + GI +A+ IF+L+ KFA YGFNKSH+ Sbjct: 702 LGGADLLRRAMGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHS 761 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SYQT W+KTHYP EF+AA MT EMDN +KI + + + + PP +NT Sbjct: 762 AAYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLTVTPPDINTGKH 821 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y + AIKGVG ++ A F L D C+RVD KK+NRR ES Sbjct: 822 HFSVNDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFES 881 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943 L+ +GA D G R L ++L++ K + K+ ++F + + +I Sbjct: 882 LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMFGVLTESPEEVEIAYANT 941 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LG Y S HP+ Y L ++ V IRG + +VV+ Sbjct: 942 PRWSEKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLVVA 1001 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1002 SRFAVTKKGNRLGIATLDDRSGRLDITLF 1030 >gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655] gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655] Length = 1159 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 400/1048 (38%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EG+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA LPLVATN+ +FL +D+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKYYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVTETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP +S +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLS-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT EMDN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR ESL Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T D + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+ +G T + + + F Sbjct: 1003 RIAITKKGNSLGIATLDDRSGRLDLTLF 1030 >gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1158 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 407/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G Sbjct: 2 SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + Q + LL EGY+ + L+S+ Y Sbjct: 62 VKPIIGTDVLV----------QSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E G+I+L+GG +G + + ++ + + +++ F D Y+ L Sbjct: 111 DWPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R ++LA +LP+VATN+ FL ED+EAH++ +A+ + R Sbjct: 170 TRTGRPDEERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T Y ++ EM +F+D+P ALENTV IA+RC+ +++ + + Sbjct: 230 PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGE-----YFLPQFPTGD 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RL + +Y +RL EL+VI +M F GYFLIV Sbjct: 285 LTTEDYLVKRAKDGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YGH V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP DD +++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 584 DISAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F Sbjct: 764 ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ Sbjct: 824 VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L Q+L++ + + K+ ++F T + + + + Sbjct: 884 SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LG Y S HP+ Y L +E V RG + +V++ + Sbjct: 944 TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRV 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+ IG T + + + F Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|251798458|ref|YP_003013189.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247546084|gb|ACT03103.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1220 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 395/1033 (38%), Positives = 600/1033 (58%), Gaps = 13/1033 (1%) Query: 5 LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + SFVHL VHS YSLL+GA + +++ + A A+A+TD ++ A+ F + Sbjct: 1 MNNIDSSFVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACL 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A GI+PIIGC++ + + P + ++LL GY+ L++LVS +L + Sbjct: 61 ARGIKPIIGCEMYFTAGSRFEKGTRKDNP---IYHLILLAKNETGYRNLMKLVSIGHL-E 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L E +EGL+ L+ G I + + + A + +K++FGD Y Sbjct: 117 GFHYKPRIDPEVL-EAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFY 175 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H D+ + +++LA + L ATN+ +L+ ED DVL+ + V Sbjct: 176 LELQDHGMLDQKKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDD 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR ++ T Y+K+ EM +F +PEA+ +T EIA +CS L LP F Sbjct: 236 TDRMKMGTDQLYMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGG 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EL +A L Q + Y Q RL +EL+VI M FS YFLIV Sbjct: 296 MTSTAYLAELCRSGLASRYAGLPQWSEDPAYREQA-EARLAYELSVIENMGFSDYFLIVW 354 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A + I GPGRGS AGS+ AY L ITD+DPL++ LLFERFLNP+R++MPD DID Sbjct: 355 DFVRFAHEQGIRTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDID 414 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RRDEVI YV KYG E VAQIITFG++ AKAA+RDVGRA+ +P+++VDR K+IPN Sbjct: 415 FNDERRDEVIAYVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPN 474 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + REA P D +++++ K+EG+ RHASTHAAG+VI PL+ Sbjct: 475 QLHITLEEA-LRISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTD 533 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 VP+ +TQ++M+ +E GL+K DFLGL+TL+++++SL ++ G ++D Sbjct: 534 YVPLQ-AGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKEIDFRK 592 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P +D +TY +L T+GIFQLESSG+R+ L+ M+P EDI+++++LYRPGP++ I Sbjct: 593 VPDNDPDTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPMEFIPN 652 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K+G + HP ++P+L +T G+I+YQEQ+MQIA ++G+SL EAD+LRRA+ KK Sbjct: 653 YIQGKHGLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKK 712 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +E +D+Q+ F+ G+ G + A +++++ +FADYGF ++HAAAY V+++QTAW+K Sbjct: 713 KREVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLK 772 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP+ F+A+ + N K ++ + R+ I+++PP VN V F + + + LA Sbjct: 773 AHYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVEGAVRFGLA 832 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK VGT I + ++PFDSL D C RVD + +N+RVLESL+ AGAL+ R Q Sbjct: 833 AIKNVGTQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRAQ 892 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L +L+ + A K R +F ++ D + L ++ + E E+ +LG Sbjct: 893 QLAALEETVEAALKWRKEREELQIELFGFDEVQNWD-VELPDIRPYSTGEQLELERELLG 951 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y SGHPLD + L +G+ + E G + A VVS + +KG+ +G++ Sbjct: 952 LYLSGHPLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGFIEI 1011 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 1012 EDRVMRAEGVVFP 1024 >gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846] Length = 1159 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 397/1048 (37%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGTDVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A + F L D C+RVD KK+NRR E+L Sbjct: 823 FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFENL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F T + + Sbjct: 883 IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEEVENAYANTP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ RG +A ++V+ Sbjct: 943 PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030 >gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G] Length = 1144 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2] Length = 1144 Score = 762 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 503/1039 (48%), Positives = 666/1039 (64%), Gaps = 32/1039 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP F+HL+VH+ +SLLEGA+ + ++ A PA+AITDTNN+F+ALEFS A +AG Sbjct: 2 SSPRFIHLRVHTEHSLLEGAVPVQKLIGLCVAQSMPAVAITDTNNMFAALEFSTYAASAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPIIGCQ+ + G+ P P IVLL + GY L++L + +Y+ + Sbjct: 62 VQPIIGCQVSLAHD----PAGPGERPRAAAP-IVLLAQSEAGYLNLMKLNTCLYI-GKAG 115 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 Q ++ ++ L GLI LTGG GP+ R A+ L ++ RLY+ L Sbjct: 116 QLPQLTVAELAA-HARGLICLTGGPDGPLGRFLQAGQRPKAQALLEKLAAIYPGRLYIEL 174 Query: 187 QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 QRH G +R E +V++AY LPLVATN+ F YEAHD L+ +A Sbjct: 175 QRHPGAGEQLPEAERASERGLVEMAYAMGLPLVATNDVYFPKAAMYEAHDALLCIAEGAY 234 Query: 240 -VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 Q R R+TP HY K +EM ++F+DLPEALEN+VEIARRC+F + Sbjct: 235 VDQQGPRRRLTPQHYFKTEAEMATLFADLPEALENSVEIARRCAFKVAKRD--------P 286 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 +E ELR +A GL RLA I +Y RL FEL +I +MKF GYFL Sbjct: 287 ILPKFADDEVEELRRQAGEGLAARLA--IIPHAVPVAEYEARLAFELGIIEKMKFPGYFL 344 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WAK IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPDF Sbjct: 345 IVADFIKWAKGQGIPVGPGRGSGAGSLVAYALTITDLDPLRYKLLFERFLNPERVSMPDF 404 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC DRR EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+ Sbjct: 405 DIDFCMDRRQEVIEYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQMPYGQVDRLSKM 464 Query: 479 IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP + PVS+ +AD+ R REA V RLL+ Q++EGL R+ASTHAAG+VIGDR Sbjct: 465 IPVEGVKPVSITKALADEPRLREAAKE-EVVARLLDYGQQIEGLLRNASTHAAGVVIGDR 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +L+ LAQRG+ +D Sbjct: 524 PLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNALELLAQRGIDID 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +SLIP DD +TY L + T+ +FQ+ESSGM AL M+P CIEDI+ALV+LYRPGP++N Sbjct: 584 ISLIPLDDAKTYELYASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMEN 643 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y KNG +I SIHP ID +L ETQG+I+YQEQVM+I Q+++GYSL AD+LRRAM Sbjct: 644 IPTYCEVKNGLRQIESIHPTIDHILAETQGIIVYQEQVMEIGQVMAGYSLGGADLLRRAM 703 Query: 718 GKKIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKKI EM K++ +FI A +G+SK A +F+LL KFA+YGFNKSHAAAYAV+SYQT Sbjct: 704 GKKIAAEMAKERPKFIEGAAKTHGVSKEKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 AW+K ++PVEF+A M ++ +K+ + ++ + I+ + P VN F V D + Sbjct: 764 AWLKANHPVEFMAGVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLASFSVRDGAVV 823 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 Y+L A+K VG + I EA KPF SL D RVD K++ +R LE L AGA D Sbjct: 824 YALGALKNVGVEAMKLITEARGAKPFASLFDLARRVDLKRIGKRPLEMLARAGAFDVLDS 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R ++ +LD + Y+ + + R + ++F E G + L R E Sbjct: 884 NRARVFDALDALGSYSAAIHEARNSNQVSLFG-EAGADLPEPRLPFRDDWLPVERLSQEH 942 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNN--IRLAAMVVSKQQKKTRKGS 1013 + +GFY SGHPLD Y L++ + E + + ++A V S+Q+KK+ KG+ Sbjct: 943 QAIGFYLSGHPLDDYMGPLKRKQVMTLHELHLRATENSPLIAKIAGSVASRQEKKSAKGN 1002 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 R +V+ S+P YE F Sbjct: 1003 RFAFVSLSDPTGLYEVTVF 1021 >gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14] Length = 1144 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 418/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ + + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|291567264|dbj|BAI89536.1| DNA polymerase III alpha subunit [Arthrospira platensis NIES-39] Length = 1219 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 386/1079 (35%), Positives = 595/1079 (55%), Gaps = 64/1079 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ I D K V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+E EGLI+ + G + +A +A + + +K++FGD Y+ Sbjct: 117 FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ + Sbjct: 176 IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R + YLK+ EM+ +F D E + + I Sbjct: 236 RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L A GL+ RL + YR+RL++EL ++ +M F+ YFL+V Sbjct: 296 PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D D Sbjct: 354 DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K+IP Sbjct: 414 FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473 Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523 P L+ + + F++A D + ++++ ++EG + Sbjct: 474 SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI +PL ++VP+ R+ +TQ+ M+ IE GL+K DFLGLK LT++Q Sbjct: 534 TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNLTIIQ 592 Query: 584 KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623 ++L++++Q +P D +TY +L G+FQL Sbjct: 593 RTLNYISQNHHLDIDPYNLAAEERKAMDILAKGSVKKMPEDVAKTYKILERGDLEGLFQL 652 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681 ESSGMRQ ++ ++P IEDI ++++LYRPGP+D I + NRK+ +E I H L++P+ Sbjct: 653 ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA++NG+ Sbjct: 713 LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T N +K Sbjct: 773 PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860 +K + + + I ++PP +N VDF +NRI + L+AIK VG H++ + Sbjct: 833 VKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ KNR Sbjct: 893 PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952 Query: 921 NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 N+F E + S + T K + + E+ +LGFY S HPL Sbjct: 953 IGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +++AA +++ + T+KG R+ ++ + + +A FP Sbjct: 1013 GVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071 >gi|284051053|ref|ZP_06381263.1| DNA polymerase III subunit alpha [Arthrospira platensis str. Paraca] Length = 1219 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 386/1079 (35%), Positives = 595/1079 (55%), Gaps = 64/1079 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++ + PAIA+TD ++ A+E + + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ I D K V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+E EGLI+ + G + +A +A + + +K++FGD Y+ Sbjct: 117 FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR +VQLA E+ +VATN+S F+S D EAHD L+ + ++++ + Sbjct: 176 IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R + YLK+ EM+ +F D E + + I Sbjct: 236 RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L A GL+ RL + YR+RL++EL ++ +M F+ YFL+V Sbjct: 296 PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D D Sbjct: 354 DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDE+I+YV +KYG E+VAQIITF + +KA L+DV R L +PYS+ D++ K+IP Sbjct: 414 FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473 Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523 P L+ + + F++A D + ++++ ++EG + Sbjct: 474 SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+VI +PL ++VP+ R+ +TQ+ M+ IE GL+K DFLGLK LT++Q Sbjct: 534 TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNLTIIQ 592 Query: 584 KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623 ++L++++Q +P D +TY +L G+FQL Sbjct: 593 RTLNYISQNHHLDIDPYDLAANERKAMDILAKGSVKKMPEDVAKTYKILERGDLEGLFQL 652 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681 ESSGMRQ ++ ++P IEDI ++++LYRPGP+D I + NRK+ +E I H L++P+ Sbjct: 653 ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM K +E FI GA++NG+ Sbjct: 713 LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + IA ++F+ + KFA+Y FNKSH+ AY I+YQTA++K +YP E++AA +T N +K Sbjct: 773 PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860 +K + + + I ++PP +N VDF +NRI + L+AIK VG H++ + Sbjct: 833 VKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 PF SL D C R++ + +N R LESL+ +GA D +R Q ++ L+ + +AQ KNR Sbjct: 893 PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952 Query: 921 NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 N+F E + S + T K + + E+ +LGFY S HPL Sbjct: 953 IGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ +++AA +++ + T+KG R+ ++ + + +A FP Sbjct: 1013 GVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071 >gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu] Length = 1104 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL +GL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + +M ++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDAASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM + +E F +GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAEHREIFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A E N +F + L + Sbjct: 886 GAFDSLNANRAQLLASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|152990427|ref|YP_001356149.1| DNA polymerase III subunit alpha [Nitratiruptor sp. SB155-2] gi|151422288|dbj|BAF69792.1| DNA polymerase III, alpha subunit [Nitratiruptor sp. SB155-2] Length = 1174 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 389/1060 (36%), Positives = 600/1060 (56%), Gaps = 47/1060 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F HL +H+ YSLL+GA + + K A+A+TD N+F A++F + A G++ Sbjct: 3 PNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEGLK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + D+L G + L GY+ L+ L S Y+ Sbjct: 63 PIIGMEAYLHNSDDL-----GDKSTRQRFHLCLFAKNEIGYKNLMFLSSMSYIKG-FYYY 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---------SSQVAEKRLLTFKKLFG 179 RI L E +EGLI + G ++ N + A+K L +K++FG Sbjct: 117 PRINKKLLAE-HSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFG 175 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ L RH +D+ + Q+++L+ + +VATN++ +L ++D E H+ M +A + Sbjct: 176 DDFYLELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNK 235 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296 + +R R + + YLK+ E+ +++D+PEALENT EI +C+ L + P P F Sbjct: 236 LYDDPNRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKF 295 Query: 297 -----------EKECDDIQKEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + E + L GL+ RL Q Y RL E Sbjct: 296 TVEYAKEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEYVP---KEQHQKYWDRLQHE 352 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +++I +MKF GY +IV DF++ AKK IPVGPGRGS AGS+ AYA+ ITDIDPL+++LLF Sbjct: 353 IDIIKKMKFPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLF 412 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD DIDFCQ+RR E+I YV KYG VAQ+ITFG+L AK +RDV R Sbjct: 413 ERFLNPERVSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARV 472 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + Y+ DR+ KLIP+ + +S+ +E +DP +R+ + LEGL R+ Sbjct: 473 LGLSYNDGDRMAKLIPDKLGITLKEA-YEQESKIKELIESDPKFERVWRFALALEGLKRN 531 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HAAG+VI + L P+Y+ + VTQ+++ ++E LIKFDFLGLKTLT++ Sbjct: 532 AGMHAAGVVISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDN 591 Query: 585 SLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + +R K+D + I +D + Y L+ + TLG+FQ+ES GM++ ++P EDI Sbjct: 592 AVKLVEKRYNTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDI 651 Query: 644 IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH-----PLIDPMLKETQGVIIYQEQVM 696 IA+++LYRPGP+++ + + RK+G++++ + L+ T G+I+YQEQVM Sbjct: 652 IAVLALYRPGPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKETLEPTYGMIVYQEQVM 711 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL EAD++RRAMGKK ++ M++ K F+ AS+ G + +FEL+ KF Sbjct: 712 QIVQTIGGFSLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEKF 771 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+ + ++ I++ Sbjct: 772 AGYGFNKSHSAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIKL 831 Query: 817 MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 +PP VN ++F G++ I + L AIKGVG + I+EA + F L DF R+ Sbjct: 832 LPPDVNLSSLEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQRI 891 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K+N++VLE+L+ +GA+D FGYSR +L ++ I + + + + ++F + Sbjct: 892 DPNKVNKKVLEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQE 951 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 K+ LE + E E+ LGFY SGHPLD ++ L K+ + Sbjct: 952 LIDIKVELEDLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIADS 1011 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + V + K + KG++ G V+ + E F Sbjct: 1012 SEALFVGKVEEIKTKISNKGNKFGIVSIMDLHGNIEMMLF 1051 >gi|219684390|ref|ZP_03539334.1| DNA polymerase III subunit alpha [Borrelia garinii PBr] gi|219672379|gb|EED29432.1| DNA polymerase III subunit alpha [Borrelia garinii PBr] Length = 1161 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 400/1036 (38%), Positives = 612/1036 (59%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 74 KAGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL ATN+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQNIVNERLVEYSRELGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + GL+ + R +EL+VI RM F GYFLIV Sbjct: 310 FN---TLGEYLEYLTLEGLK-------FRYRTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EMD+ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 AIKNLGEIVVDLIIDEREKNGKYISFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F KG + + F + S E E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM] gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM] Length = 1163 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 507/1057 (47%), Positives = 678/1057 (64%), Gaps = 50/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL++H+ YSLLEGA+ L + A PA+A+TD+NN+F+ALEFS A Sbjct: 1 MSTAPRFIHLRLHTEYSLLEGAMRLKKLPGLCANMDMPAVAVTDSNNMFAALEFSVSAQG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D + + +VLL GY+ L++L S +YL Sbjct: 61 AGVQPIMGCQVDFHYDE--------AAGDEAIAPLVLLAQNEAGYENLMKLNSCLYLRGD 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L E EGLI LTGG GP+ R + VAE + K + RLY+ Sbjct: 113 G-SLPHVIIEEL-ERHAEGLICLTGGPDGPVGRLLQAGRAPVAEALVARLAKAYPTRLYI 170 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY LPLVATN+ F ++E +EAHD ++ VA Sbjct: 171 ELQRHPGENGQPEAERLTERGHVEMAYAMGLPLVATNDVYFPNKEMFEAHDAMLCVAEGA 230 Query: 239 VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q R R+TP+HYLK EM ++F+DLPEALENTVEIARRC+F + Sbjct: 231 YVDQSGPRRRLTPEHYLKTPQEMATLFADLPEALENTVEIARRCAFGCY--------RRD 282 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR A AGL+ RLA I +DY++RLDFEL +I M F GYF Sbjct: 283 PILPKFADDEVAELRRMANAGLQARLA--VIPHAASVEDYQKRLDFELGIIEGMGFPGYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 341 LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 401 FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 460 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +A + R RE + V+RLL K+EGL R+ASTHAAG+VIGD Sbjct: 461 MIPVEGVKPVSIEQALAQEERLREEARREEVVERLLNYGMKVEGLLRNASTHAAGVVIGD 520 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------ 590 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Sbjct: 521 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDQIKGGGRHL 580 Query: 591 ------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G D+ IP DD +TY L T+ +FQ+ESSGM AL+ M+P Sbjct: 581 HQAADGATLYEPPEGAVDDIGQIPLDDAKTYELYARAKTVAVFQVESSGMMDALKRMKPT 640 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HPLID +L+ETQG+I+YQEQVMQI Sbjct: 641 CIEDIVALVALYRPGPMENIPTYCEVKNGVKERESVHPLIDHILEETQGIIVYQEQVMQI 700 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA++NG+ K A +F+LL KFA+ Sbjct: 701 AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 760 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ ++ + + Sbjct: 761 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLGLDWL 820 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F V D ++Y L A+K VG R I +A DKPF +L DF RVD KK+ Sbjct: 821 PPCVNRSEARFIVRDGVLHYGLGALKNVGVDAMRLITQARGDKPFATLYDFARRVDLKKI 880 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 +R LE L AGA D +R ++ SL+ + Y+ + + R + ++F E G + Sbjct: 881 GKRPLEMLARAGAFDELDRNRRRVFDSLEGLMNYSAAIHEQRNSNQVSLFG-EAGDDLPE 939 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995 + + R E R +GFY SGHPLD Y L++ +K +E RG Sbjct: 940 PRIMPVEDWLPAERLTEEFRAVGFYLSGHPLDDYMAALKRKDVKTLDEVEMLARGGACIA 999 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA +V +Q++K+ +G+R +V S+ YE F Sbjct: 1000 KLAGVVAGRQERKSARGNRFAFVQLSDTTGGYEVTMF 1036 >gi|310828648|ref|YP_003961005.1| DNA polymerase III DnaE [Eubacterium limosum KIST612] gi|308740382|gb|ADO38042.1| DNA polymerase III DnaE [Eubacterium limosum KIST612] Length = 1146 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 378/1027 (36%), Positives = 593/1027 (57%), Gaps = 43/1027 (4%) Query: 33 LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92 + + + ++A+TD LF A++F + GI+P+IGC++ + + ++ + Sbjct: 1 MKEAKDLEMKSLALTDHGVLFGAVDFYKACLEEGIKPLIGCEVYVSPR---RLDQKEGNI 57 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 +VLL +GY+ L+++VS ++ D R+ +L++ EG+I L+ Sbjct: 58 DTNPYHLVLLAENNDGYKNLMKVVSEGFI-DGFYYKPRVDHEYLRK-HHEGIICLSACIG 115 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELP 210 G I R Q A + ++ +FG ++ +Q HR + ++ + +++P Sbjct: 116 GEIPRLIIEGQLQKANEICQMYQDIFGKGNFFLEIQDHRMQKEAQVNEVLIDFSKKYDIP 175 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPE 269 LVATN+ ++ + D EAHD+L+ + + V ++R R + YLK+ EM +F D+PE Sbjct: 176 LVATNDVHYVRKADAEAHDILLCIQTAASVDDEERMRFPNNEFYLKSPDEMSRLFIDVPE 235 Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 A+ENT +IA RC+ + + LP F E + LR AGL+ Sbjct: 236 AIENTNKIAERCNVSFDLESAHLPEFELPEGEP---SAGGYLRKLCEAGLK-------AR 285 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 + ++R+D+EL+VI M F YFL+V DFI++AK ++I VGPGRGS AGS+ AY Sbjct: 286 YQEITPEIKERMDYELDVIHSMGFDNYFLVVWDFIKYAKDHDIMVGPGRGSAAGSLVAYG 345 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT +DPL+++LLFERFLNP+R++MPD D DFC +RR EVI YV KYG + VAQIITF Sbjct: 346 LDITTLDPLKYNLLFERFLNPERITMPDIDCDFCYERRQEVIDYVIRKYGADHVAQIITF 405 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSV 508 G++ A+ A+RDVGRAL MPY+ VD++ K IP P ++++ + ++S R+ + DP V Sbjct: 406 GTMAARGAVRDVGRALNMPYNAVDKVAKEIPMHPGQNITIERALEENSELRKMKENDPEV 465 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 +LL++++ +EGL RHASTHAAG+VI D+PL + VP+YR+ D+ TQF M +E GL Sbjct: 466 SKLLDMAESMEGLARHASTHAAGVVISDKPLMEYVPLYRN--GDMITTQFPMGLLEDLGL 523 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IK DFLGL+TLT+++ +L+ + + ++L I +D + Y +L+ TLG+FQLES G Sbjct: 524 IKMDFLGLRTLTVIRDALENIKHSQGMNINLDNIDLEDPKVYKMLSKGDTLGVFQLESKG 583 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M + +QP+ EDIIA +SLYRPGP+D I Y K E I +HP+++P+L T G Sbjct: 584 MIAFMRDLQPEHFEDIIAGISLYRPGPMDQIPRYIENKKSPEAITYLHPILEPILDVTYG 643 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK------------KIKEEMDKQKERFISG 735 ++YQEQVMQI + ++G+++ +D++RRAM K I E+D+ E I G Sbjct: 644 CMVYQEQVMQIFRDVAGFTMGRSDLVRRAMSKKKIDVMNQEGEVFIHGEVDENGETVIDG 703 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A + G+ + +A I+ + FA Y FNKSHAAAYAVI+YQTAW+K +YP EF+AA M+ Sbjct: 704 AVRRGVPENVAEQIYAEMKDFAKYAFNKSHAAAYAVIAYQTAWLKCYYPTEFMAALMSSV 763 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855 MD+ +K+ K+ +D R+ +I+++PP VN F V +N+I + L AIKG+G I+ Sbjct: 764 MDDEKKVSKYIEDCRKNDIKVLPPDVNVSYDKFSVKNNKICFGLGAIKGLGKNAIVSIVN 823 Query: 856 ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 A D F DFC +VD K LN+R++E L+ +GA D G +R QLL + + Q Sbjct: 824 ARETDGAFKGFRDFCEKVDLKALNKRMVEGLIKSGAFDYTGSTRAQLLLGAERMVDQVQR 883 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 +++R ++ + + L + R E+ VLG Y +GHPL+ Y+ Sbjct: 884 EKRDRLAGQISLLDFGGNSSLKEDFLPDVAPFTKEQRLALEKEVLGLYVTGHPLEKYENT 943 Query: 975 LRKMGIK------GYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 L++ YE+ G + + ++ + + TR G + ++T + Sbjct: 944 LKEKTNLNSSMLDSYEDLRDSGIRDGGAVIIGGLIDDVKNQITRNGKLMAFMTLEDLYGR 1003 Query: 1027 YEANFFP 1033 E FP Sbjct: 1004 LEVVVFP 1010 >gi|261367002|ref|ZP_05979885.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM 15176] gi|282571120|gb|EFB76655.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM 15176] Length = 1150 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 374/1023 (36%), Positives = 572/1023 (55%), Gaps = 40/1023 (3%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 + + + A Q A AITD ++ + F A AAGI+PIIGC++ + + N+ Sbjct: 1 MFEHLKAMGQTACAITDHGVMYGCVAFFDAAKAAGIKPIIGCEVYVATRTRFDKVNR--- 57 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 ++LL GY+ LI++VS +L + RI L++ EGLI L+ Sbjct: 58 -IDGNSHLILLCKNEVGYRNLIKMVSAGFL-EGFYSKPRIDKDLLEQ-HHEGLICLSACL 114 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209 +G I +A + A++ L ++ LFG + Y+ LQ H D+ Q+++LA + Sbjct: 115 AGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQDHGLEEDQVVLPQLIRLARETGI 174 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLP 268 P+VATN++ ++++ED + +L+ + ++ DR T + YLK+ EM +FS +P Sbjct: 175 PMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRMEFQTDEFYLKSADEMYELFSMVP 234 Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328 EA ENT +IA +C+F LP F + E + GLE R Sbjct: 235 EACENTNKIAEQCNFEFTFGETKLPYFRAPDGM----ENQAYFEKLCWEGLERRYP---- 286 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 G R+RL +E+ V+ M ++ Y+LIV DFI +AK +IPVGPGRGSGAGS+ AY Sbjct: 287 --GKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVGPGRGSGAGSLAAY 344 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR EVI YV KYG + VAQI+T Sbjct: 345 CVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVNEKYGRDHVAQIVT 404 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508 FG++ A+AA+RDVGR + M Y VD++ KLIP + + +A+ + AD V Sbjct: 405 FGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPMELKMTL-QKALDVSPDLKAMYEADAQV 463 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 L++ S K+EG+ RHASTHAAG+VI P ++ VP+ + LPVTQFNM IE+ GL Sbjct: 464 RELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPLSTN--DGLPVTQFNMVEIERLGL 521 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 +K DFLGL+TLT++ + + ++ + ++ I +DD +TY +L T GIFQLES+GM Sbjct: 522 LKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETEGIFQLESTGM 581 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 Q L M+P +EDIIAL+SLYRPGP+D+I Y + KI P + +L T G Sbjct: 582 TQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQLAHILDVTNGC 641 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF----------ISGASK 738 I+YQEQVMQI + L+G+S +AD +RRAM KK + M+ ++E F +G K Sbjct: 642 IVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTEPGKECAGCVK 701 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NGI + +A I++ + FA Y FNKSHAA YA +++QTA++K HYP EF+AA +T +DN Sbjct: 702 NGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFMAALLTSVLDN 761 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 K+ ++ + ++ I+++ P +N F + I + L A+K VG +++ Sbjct: 762 TSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRNLIDAVVKERQ 821 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 ++P+ L DFC R+ +LNRR LE+L+ +GA D SR +L+ ++ I K + + Sbjct: 822 NRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGILKSVETDMRQ 881 Query: 919 RTNKHENIFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++F G + + K S +S + E+ V G Y SGHPLD Y+ Sbjct: 882 NLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLSGHPLDAYREQ 941 Query: 975 LRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + ++ + + + VV + T+ + + + T + E Sbjct: 942 IAQISTCTIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTIEDLTGTMELL 1001 Query: 1031 FFP 1033 FP Sbjct: 1002 VFP 1004 >gi|325067134|ref|ZP_08125807.1| DNA polymerase III subunit alpha [Actinomyces oris K20] gi|326771682|ref|ZP_08230967.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505] gi|326637815|gb|EGE38716.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505] Length = 1197 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 356/1081 (32%), Positives = 572/1081 (52%), Gaps = 56/1081 (5%) Query: 1 LTQYLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 ++ E +P FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF Sbjct: 4 MSSQEEAAPKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEF 63 Query: 59 SQKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAE 107 A AAGI+PIIG + + + + + + + LL E Sbjct: 64 YAAATAAGIKPIIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNE 123 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G L+ + S L Q ++ RI L + GLI TG S + A Sbjct: 124 GLHNLMRMDSFASLEGQWGKAPRIDRELLSRYAS-GLIGSTGCPSSEVQTRLRLGQWDEA 182 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + + +FG + YV L H ++ ++++A PL+ATN+S ++ ED Sbjct: 183 LRVAGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRIAKEIGAPLLATNDSHYVRPEDR 242 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFI 284 D ++ + +V+S DR + D Y +EM +FS++P+A +NT+ +A +C Sbjct: 243 TIQDAMLCINSGSVLSDPDRFKFDGDTYYLRPGAEMRRLFSEMPQACDNTLLVAEQCDVH 302 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + ++ + +E+ + G++ R G +D R++ ++E Sbjct: 303 FRTVD-EGASYMPAFPVPEGETDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYE 355 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+F Sbjct: 356 ISVITQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIF 415 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R Sbjct: 416 ERFLNPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRV 475 Query: 465 LQMPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEIS 515 + PY+ DRL K +P +S++ I + FR+ DP +++E++ Sbjct: 476 MGYPYAVGDRLTKAMPPSVQGKDISIKGIFNPADERYGEAEEFRKLHAEDPDAQKIVELA 535 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLG Sbjct: 536 KGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLG 595 Query: 576 LKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ +L+ + G D+ + DD TY LL+ TLG+FQL+ GMR L Sbjct: 596 LRNLTVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRL 655 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGV 688 M+PD EDI A+ +LYRPGP+ ++ Y RKNG ++++ IHP +DP+L T G+ Sbjct: 656 MKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVIPIHPELKEALDPILGTTHGL 715 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM+IA L+G+S+ +AD LR+AMGKK + + K F +G ++G SK Sbjct: 716 IVYQEQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQSGFSKESVKT 775 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +++++ FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + Sbjct: 776 LWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGE 835 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867 R I ++PP VN F + + L+A++ VG I+ A D F S ED Sbjct: 836 CRHMGITVLPPDVNASRAQFSAVGEDVRFGLSAVRNVGINVVDAIVAAREDKGEFTSFED 895 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V + N+R ++SL+ AGA D G++R L ++ V++N ++F Sbjct: 896 FLDKVPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLF 955 Query: 928 AHEKGTFSDK------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 A G D + + + E+ +LG Y S HPL + +L Sbjct: 956 ASLMGGSDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLL 1015 Query: 976 RKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K+ K E G + +A ++ S +K T++G+ + A E FF Sbjct: 1016 GKLADKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSIEVLFF 1075 Query: 1033 P 1033 P Sbjct: 1076 P 1076 >gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1] gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1] gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1] gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1] gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1] Length = 1144 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFVDIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|315127143|ref|YP_004069146.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913] gi|315015657|gb|ADT68995.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913] Length = 1163 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 424/1054 (40%), Positives = 597/1054 (56%), Gaps = 43/1054 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL+VHS +S+++G I+ K + PA+AITD N + F A Sbjct: 1 MA-APEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGAAHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + + LL GY+ + L+S+ Y Sbjct: 60 AGIKPIVGADFWV----------RSPEFPDEPSRLTLLAKDNIGYKNITLLISKAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL ++ EGLI+L+G G + +A + + E + +K+ F D Y+ Sbjct: 110 VFHRPVIDREWLVDL-KEGLIILSGAKDGDLGKALIKGNPAIVESVVSFYKQHFSDHYYI 168 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 169 ELIRTNRAQEENYLHMAVELATNEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ + + Sbjct: 229 RRPKRFSQEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGE-----YFLPDYPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + + L + GLE RL + + +Y +RL EL+VI +M F GYFLI Sbjct: 284 GSLKIDEFLVKVSQDGLEERLQFLFPDEQERQEKRGEYDERLKIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + R +EA D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFDVEPRLQEAYDGDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +LD +R Sbjct: 523 TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLKREGKQ 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG I+EA PF L DFC+RVD K+LN+RV E L Sbjct: 823 FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882 Query: 886 VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 ++AGALD G R LL SL + + A K ++F + + Sbjct: 883 IYAGALDQLGPEKTQPGRATLLASLKDAMRAADQHNKAELLGQSDLFGLLATEPDEVEQA 942 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 K + + + E+ LG Y +GHP++ Y+ L + T R A Sbjct: 943 FIKATPLTDNQWLDGEKDTLGLYLTGHPINQYRRELGHYTSGRLIDLQPTNRDVVSTGAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V++ + +KG+R G +T + + + FP Sbjct: 1003 LVIAARTLINKKGNRWGLITLDDKSARIDVRLFP 1036 >gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1] gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1] Length = 1144 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|119487742|ref|ZP_01621251.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106] gi|119455575|gb|EAW36712.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106] Length = 1206 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 379/1081 (35%), Positives = 596/1081 (55%), Gaps = 65/1081 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++++ + PAIA+TD ++ A+E ++ + GI+P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127 IIG ++ + D + + K V+L +GY+ L++L + +L QGK Sbjct: 62 IIGNEMYVINADVTQQQGRLKK-----YHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGI 116 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ EGLI+ + G + +A S VA K ++ +FG+ Y+ Sbjct: 117 FARPCINKELLKQYH-EGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIE 175 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A ++ ++ATN+S F+S D EAHD L+ + ++++ Sbjct: 176 IQDHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDK 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD- 301 R R + YLK+ EM +F D + + + S ++ + IL + Sbjct: 236 RMRYSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPI 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L GL RL + YR+RL++EL ++ +M FS YFL+ Sbjct: 296 PPNHTSDTYLEEVTWKGLIERLQDQIKIQTRSEIPPVYRERLEYELKMMQKMGFSTYFLV 355 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D+I++A+ + IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R SMPD D Sbjct: 356 VWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSMPDID 415 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DFC RRDE+IRYV N+YG ++VAQIITF + +KA L+DV R L +PYS+ D++ KLI Sbjct: 416 TDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKLI 475 Query: 480 PNDPAHPVSLQAI----ADDSRFREARLADP--------------SVDRLLEISQKLEGL 521 P P L+ + F+ A + V + ++++ ++EG Sbjct: 476 PVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIRIEGT 535 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 + HAAG+VI +PL ++VP+ R+ +TQ+ M+ IE GL+K DFLGLK LT+ Sbjct: 536 NKTFGVHAAGVVISKQPLDEIVPLQRN-NDGAVITQYFMEDIEALGLLKMDFLGLKNLTI 594 Query: 582 LQKSLDFLAQRGVKVDLSLIPFDD--------------------HETYHLLTTKGTLGIF 621 +Q+ ++ + + + D +TY LL G+F Sbjct: 595 IQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDLEGVF 654 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID 679 QLESSGMRQ + ++P IEDI ++++LYRPGP+D I + +RK+ + I HPL++ Sbjct: 655 QLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEYEHPLLE 714 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 +L+ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK EM KQ+E FI G++KN Sbjct: 715 SILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFIDGSTKN 774 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G+SK IA ++F+ + FA+Y FNKSH+ AY ++YQTA++K +YPVE++AA +T DN Sbjct: 775 GVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTENSDNT 834 Query: 800 EKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K++K+ ++ I+++ P VN VDF D I + L+AIK VG T +I+ A Sbjct: 835 DKVQKYIDSCQRSLKIKVVSPDVNHSNVDFTPSDGEIIFGLSAIKNVGETAIENILAARK 894 Query: 859 D-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + F L DFCSRV +N R LESL+ GALD +R Q ++ L+ + +AQ K Sbjct: 895 EGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPWAQGKAK 954 Query: 918 NRTNKHENIFAHEKG-----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 +R +IF T K ++ + + E+ +LGFY S HPL Sbjct: 955 DREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKLQFEKELLGFYVSEHPLQSVI 1014 Query: 973 PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ +G +++ ++V ++ T+KG + ++ + + + EA F Sbjct: 1015 KAYPVEDAITLQDLAE-HKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMSGQAEAIVF 1073 Query: 1033 P 1033 P Sbjct: 1074 P 1074 >gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82] Length = 1144 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 420/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL N K A K ++F + + + V + E+ LG Sbjct: 884 NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1] gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1] Length = 1199 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 355/1060 (33%), Positives = 558/1060 (52%), Gaps = 40/1060 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL HS YSLL+GA + ++ + A+A+TD NL ALEF +KA Sbjct: 18 IPETKPFVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRKAKD 77 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI PIIG + I + + LL G++ LI+L S L + Sbjct: 78 AGINPIIGYEAYIAPGSRFDK-GGASSSKAASYHLTLLAQNRTGFKNLIKLASAASL-EG 135 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFG 179 RI L++ EG++ L+G S RA + A+K F K+FG Sbjct: 136 FYFKPRIDKEILEKY-NEGIVCLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHKVFG 194 Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR ++ + + R + V +A LPLVAT++ ++++ED EA D+++ + Sbjct: 195 DRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCINTGR 254 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + R ++ +L++ +M F L +A+ + EIA L+ + P F Sbjct: 255 FRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPSFPC 314 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + LR GL R I G + + RLD EL+VI ++ + Sbjct: 315 PD----ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLGYPT 370 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DF+ A+ I RGSG G++ YAL ++ + PLR+ LLFERFL+ R Sbjct: 371 YFLIVWDFVNHARDIGI-SATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESRTEP 429 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P S+V+++ Sbjct: 430 PDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRVNQI 489 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 +L+P++ + +++ + + DP + LL+++ K+EGL R+ THAA +VI Sbjct: 490 TELVPDELKITI-AKSLEKSADLKMIYDGDPEIRELLDLAMKIEGLARNVGTHAAAVVIA 548 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 D+PL++ VP+ R +TQ+ M +E +GL+K DFLGL+ LT+L +++ + Q Sbjct: 549 DKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVEQTTGT 608 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D P DD +Y LL T G+FQLES G+R L+ M+PD DIIA +LYRPGP Sbjct: 609 TIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIATAALYRPGP 668 Query: 655 ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 ++ + Y N K+G+++ HP++ +L+ET +++YQEQVM+I L L++A Sbjct: 669 LEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGDVPLAKAYT 728 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 +A+ KK + +D + FI+G+ KNG+++ A +I+ L+ KFA YGFNKSH+ AYA++ Sbjct: 729 CIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHSTAYALV 788 Query: 773 SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 +YQTA++K HYPVEF+AA ++ + + + + +D + +I+++PP+VN D Sbjct: 789 AYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVNQSDAD 848 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V D +I ++L+AIK G +TA I E + PF + DFC RVD NR +E+L+ Sbjct: 849 FGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCNRSSIETLI 908 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKI 938 AGA DCFG R QL L+ + V+ ++ + F A G S + Sbjct: 909 KAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEVDADSNGESSAAV 968 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 L + E+ VLGFY HPL ++ L E + + + Sbjct: 969 PLPDIEEWPDREKLLAEKEVLGFYLDSHPLAEFENKLATFRTHTTESMADCKDRDEVIVG 1028 Query: 999 AMVVSKQQKKTRK---G--SRIGWVTFSEPAKEYEANFFP 1033 M+ S + T+ G S+ + A +P Sbjct: 1029 GMISSIKIAHTKNPKPGAPSKYANFDLEDMAGSVRCICWP 1068 >gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74] Length = 1144 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 420/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKSAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL N K A K ++F + + + V + E+ LG Sbjct: 884 NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53] Length = 1188 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 499/1079 (46%), Positives = 675/1079 (62%), Gaps = 69/1079 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F+HL+ H+ YSLLEGA+ + ++ A PA+A+TDTNN+F ALEFS+ A Sbjct: 1 MTDSPRFIHLRTHTEYSLLEGAVPVKSLAPLAAGMGMPAVAVTDTNNMFCALEFSEYAVK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQLD+ + GK P P P IVLL GY L++L S YL Sbjct: 61 AGVQPIIGCQLDLAY----ATPDPGKRPEPPAP-IVLLAQNEAGYLNLMKLNSCAYLDAA 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + ++ + L + GT GLI LTGG GPI R A+ L ++ RLYV Sbjct: 116 G-ELPQVTVDELAQYGT-GLICLTGGPDGPIGRLLRHGQQAKADLLLDQLAAIYPQRLYV 173 Query: 185 NLQRH----RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH + R S+ +++AY LPLVATN+ F YEAHD L+ +A Sbjct: 174 ELQRHPVDGGLPEAERLSERGHIEMAYAKGLPLVATNDVYFPKSAFYEAHDALICIADGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R R+TP HY K+ EM ++F+DLPEALENT+EIA+RC+F A Sbjct: 234 YVDQQEPRRRLTPQHYFKSPREMATLFADLPEALENTIEIAQRCAFKAYKRA-------- 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A GL RLA I +DY +RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVAELRRQAQEGLRARLA--VIPHAASIEDYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK N IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RDVGR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + V RLL +Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVQRLLTYAQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++ +++ + + Sbjct: 524 RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIHNAVELIRKAGRSL 583 Query: 593 --------------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 G + D+ IP DD ++Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 NVTADGDVLYQPPVGFEYDIGAIPLDDAKSYALYASAKTIAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG +++ SIHP ID +L ETQG+I+YQEQVM+I Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGIKELESIHPSIDHILAETQGIIVYQEQVMEI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F +GA NG+ A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ I + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYFQEVKKGLGIDYI 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD------------------ 859 PP VN F+V D ++ Y+L A+K VG + I+ Sbjct: 824 PPCVNRSGATFEVQDGKLVYALGALKNVGVEAMKLIVAGREGHPGLDPGPHSAGGPGSAS 883 Query: 860 ----KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 KPF +L DF R D K++ +R LE L AGA D +R +++ SLD + Y+ + Sbjct: 884 GATPKPFVNLFDFARRCDLKRIGKRSLEMLARAGAFDVLDRNRRRVMASLDALTAYSAAI 943 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 +++ ++F + L + R E + +GFY SGHPLD Y L Sbjct: 944 HDQKSSNQVSLFGDAGEDL-PEPRLAFGDDWLPAERLAEEFKAIGFYLSGHPLDDYMGAL 1002 Query: 976 RKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +E +A +++A V +Q++K+ +G+R +V S+P +YE F Sbjct: 1003 KRKQVLTLDEVIARAEKGAALVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1061 >gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75] gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75] gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1] Length = 1144 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 417/1032 (40%), Positives = 604/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E L + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|329944570|ref|ZP_08292710.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328530123|gb|EGF57006.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 1197 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 356/1070 (33%), Positives = 563/1070 (52%), Gaps = 54/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF A A GI+P Sbjct: 15 DFVHLHVHTDYSMLDGAGKVKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAAKAVGIKP 74 Query: 70 IIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + + + + + LL EG L+ + S Sbjct: 75 IIGVEAYMTPGTSRFDKTRIFWGDESQRGDDVSARGSYTHMTLLSRNNEGLHNLMRMDSF 134 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L Q ++ RI L G GLI TG S + A + + +F Sbjct: 135 ASLEGQWGKAPRIDRELLSRYG-GGLIGTTGCPSSEVQTRLRLGQWDEALRAAGELQDIF 193 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + YV L H ++ +++LA PL+ATN+S ++ ED D ++ + Sbjct: 194 GKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAMLCINS 253 Query: 237 STVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +V+S DR R D Y +EM +FS++P A +NT+ +A +C + F Sbjct: 254 GSVLSDPDRFRFDGDTYYLRPGAEMRRLFSEMPHACDNTLLVAEQCDVHFRTVD-EGASF 312 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + +E+ + G++ R G +D R++ ++E++VI +M F G Sbjct: 313 MPAFPVPEGETDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVITQMGFPG 366 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+FERFLNP+R+SM Sbjct: 367 YFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFLNPERISM 426 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R + PY+ DRL Sbjct: 427 PDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYPYAVGDRL 486 Query: 476 CKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +S++ I + FR+ DP +++++++ LEG+ R Sbjct: 487 TKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVDLAKGLEGMTRQWG 546 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ LT++ +L Sbjct: 547 VHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNLTVISDAL 606 Query: 587 DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D + G D+ + DD TY LL+ TLG+FQL+ GMR L M+PD EDI A Sbjct: 607 DNIVANGKPALDIDHVELDDRGTYELLSRGETLGVFQLDGGGMRTLLRLMKPDNFEDISA 666 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 + +LYRPGP+ ++ Y RKNG +++V IHP ++P+L T G+I+YQEQVM+IA Sbjct: 667 VGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKEALEPILGTTHGLIVYQEQVMKIA 726 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 L+G+S+ +AD LR+AMGKK + + K F +G + G SK +++++ FA Y Sbjct: 727 TDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDVVVPFAKY 786 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + R I ++PP Sbjct: 787 AFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHMGITVLPP 846 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878 VN F D + + L+A++ VG I+ A F S EDF +V + N Sbjct: 847 DVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAARREKGEFTSFEDFLDKVPAVVCN 906 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 +R ++SL+ AGA D G++R L ++ V++N ++FA G + Sbjct: 907 KRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLTGGSDGED 966 Query: 938 -----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + + + E+ +LG Y S HPL + +L K+ K E Sbjct: 967 SSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLADKEISEL 1026 Query: 987 ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ S +K T++G+ + A E FFP Sbjct: 1027 HENDELPDGAMVSIAGLITSLTRKTTKQGNLWAIAQIEDLAGSIEVLFFP 1076 >gi|159903240|ref|YP_001550584.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9211] gi|159888416|gb|ABX08630.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9211] Length = 1171 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 384/1048 (36%), Positives = 591/1048 (56%), Gaps = 33/1048 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA L ++ + A PAIA+TD ++ A+E + + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQLPAMVSRAKALGFPAIALTDHGVMYGAIELLKLCKSEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ + + +V+L GY+ L++L + +L + Sbjct: 63 IGNEMYVVNGSIEDPQPK----KERRYHLVVLAKNDVGYRNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I L+ EGLI+ T G I +A + VA+ +KK+FGD Y+ + Sbjct: 119 SRACIDKQLLETY-KEGLIISTACLGGEIPQAILRDRIDVAKDVASWYKKVFGDDFYLEI 177 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR + + ++A + L+ATN++ +L+++D EAHD L+ V ++S++ R Sbjct: 178 QDHGSVEDRIVNTGICRIAKELNIELIATNDAHYLTKDDVEAHDALLCVLTGKLISEEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T YLK+ EM +FSD ++ + S ++ + + + + Sbjct: 238 LRYTGTEYLKSEEEMGKLFSDHIESNIIQEAINNTVTVSEKVEEYNILGTYKMPQFPVPD 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + LR + GL RL ++ + Y RL+ E+ +I +M F YFL+V D+ Sbjct: 298 GGQSTDYLRKVSQDGLMTRLKLESLEMIEN--KYINRLNSEIKIIEQMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A++N+IPVGPGRGS AGS+ AY+L IT+IDP+ LLFERFLNP+R SMPD D DFC Sbjct: 356 IRFARENHIPVGPGRGSAAGSLVAYSLGITNIDPVTNGLLFERFLNPERKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PYS DRL KLIP Sbjct: 416 IERRGEVIDYVTKRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYSDADRLAKLIPVVR 475 Query: 484 AHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + FRE DP V + L+++ ++EG + HAAG+VI PL Sbjct: 476 GKPAKLSQMIGDNTPSKDFREKYQNDPLVKKWLDMAIRIEGTNKTFGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 LVP+ R+ +TQ+ M+ IE GL+K DFLGLK LT+++K++ + G K+DL Sbjct: 536 DNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLKNLTMIEKAVTLVEDSLGEKLDL 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 + DD +TY LL+ GIFQLES+GMRQ ++ ++P +EDI ++++LYRPGP+D Sbjct: 595 DQLNMDDTKTYELLSKGDLEGIFQLESTGMRQIVKDLRPSSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRK+GKE+I H + P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKHGKEQIDFPHASLAPILGETYGIMLYQEQIMKIAQELAGYSLGQADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM+K + F+ GASKNGI+ IA +FE + FA+Y FNKSH+ AY +++QT Sbjct: 715 MGKKKVAEMEKHRNFFLEGASKNGINSNIANELFEQMLLFAEYCFNKSHSTAYGAVTFQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYPV ++AA +T+ + +K++++ + I++MPP VN+ +DF +N I Sbjct: 775 AYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDVNSSGIDFTPNENHIL 834 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + ++A+K +G R ++++ D F SL D C R+ LNRR LESL+ +GALD F Sbjct: 835 FGMSAVKNLGDGAIRELIKSREEDGSFISLADLCDRIPPNTLNRRGLESLIHSGALDSFD 894 Query: 896 Y--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFSV 945 +R QLL LD I ++A ++R + N+F + ++ S Sbjct: 895 KKANRAQLLADLDLIIEWATSRARDRISGQGNLFDLASSSSENQTSNSLHTAPKAAPVSD 954 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + + E+ ++GFY S HPL + + + + + AM+ + Sbjct: 955 YSPTEKLRLEKELIGFYLSDHPLKQLSEPAKLIAPISLGTLEDQRDKSKVSVIAMINDMR 1014 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 TRKG ++ + + EA FP Sbjct: 1015 VVTTRKGDKMAILQIEDLTGSCEAVVFP 1042 >gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1] Length = 1177 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 497/1068 (46%), Positives = 679/1068 (63%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ HS YSLLEGAL L + D PA+A+TDTNN+F+ALEFS Sbjct: 1 MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ L L E GLI LTGG+ GP+ + AE + F DRLYV Sbjct: 115 GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D + E V++AY +PLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPNADMYEAHDALICIADGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+ R R+T HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E EL+ +A GL+ RL I ++Y +RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ + S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R + + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I E DKPF +L D RVD Sbjct: 824 PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ QSLD + Y+ + + + + ++F E G Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987 + + ++ R E + +GFY SGHPLD Y +++ +E Sbjct: 943 DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002 Query: 988 ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|157165237|ref|YP_001467325.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826] gi|112801857|gb|EAT99201.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826] Length = 1203 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 378/1064 (35%), Positives = 592/1064 (55%), Gaps = 47/1064 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ F HL +H+ YSLL+GA + + + A AITD N+F A++F +K Sbjct: 1 MSENSGFTHLHLHTEYSLLDGANKIEELAHTLHDRGDTAAAITDHGNMFGAIDFYKKMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+P+IG + + + L ++L+ GY+ L+ L S Y+ + Sbjct: 61 NGIKPLIGIEAYVHNGEQL-----DDKSTKQRFHLILIAKNETGYKNLMYLSSMSYI-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFK 175 RI L+E +EGL+ + G + + A++ L +K Sbjct: 115 FYYYPRINKKILKE-HSEGLVCSSACLQGEVSWHLNLSERNVKFGAKGYERAKEVALEYK 173 Query: 176 KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FGD Y+ + RH D+ R ++++A + ++ATN++ + +E AH+V M + Sbjct: 174 EIFGDDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERAAAHEVFMCI 233 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS----------- 282 A + + +R R + + ++K++ +M +F D+PE +ENT EI +C+ Sbjct: 234 AMNKTLDDPNRLRHSVHEFFVKSKEQMNELFLDIPEVIENTQEIVDKCNLEIKLGNPTPP 293 Query: 283 ---FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 F L+ E E K + ++ GLE RL ++YR+ Sbjct: 294 NFKFTLECAKERNLTLPEPENRYSFKNDAVFFEHECRKGLEERLK---FVPENLHEEYRK 350 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ E+++I +M F GY +IV DFI AK+ +PVGPGRGS AGS+ AY+L ITD+DP+ Sbjct: 351 RLEIEISIINKMNFPGYMMIVWDFINEAKRRGVPVGPGRGSAAGSLVAYSLKITDLDPIP 410 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP+R+SMPD D+DFCQ RR E+I YV KYG VA +ITFG L AK +R Sbjct: 411 YNLLFERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKFNVAGVITFGKLLAKGVIR 470 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R MPY++ D + KLIP++ + A + + E +P ++ + + LE Sbjct: 471 DVARVCDMPYAEADAMAKLIPDELNITLK-DAYDKEPKIAELISQNPKAAKIWKFALDLE 529 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 GL R+A HAAG+VI + L P+ + D VTQ+++K++E LIKFDFLGLK Sbjct: 530 GLNRNAGQHAAGVVISNEELWNKTPLFRQPNSPEDRFVTQYSLKYLEDVDLIKFDFLGLK 589 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT++ ++ + QR ++ + +D Y ++ + +GIFQ+E GMR+ ++ Sbjct: 590 TLTVIDNAIKLVKQRTGREIVWEQVDKNDSGVYKMIQSGQAIGIFQIEGEGMRKLGTSLR 649 Query: 637 PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 PDC EDI+A+++LYRPGP+++ + + RK+G+ +I ++P+L T GVI+YQEQ Sbjct: 650 PDCFEDIVAMLALYRPGPMESGMLDDFVKRKHGEAEITYAFKELEPILAPTYGVIVYQEQ 709 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F+ GA G++ A ++FEL+ Sbjct: 710 VMQIVQAIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFVKGAEAKGLNGQKADDLFELIV 769 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E NV+KI ++ + ++ NI Sbjct: 770 KFAGYGFNKSHSAAYAYVTFQTAYLKAYYPAEFMAALLTSEESNVDKIVRYIDEIKRINI 829 Query: 815 QIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 +PPS+N +F V N I + L AIKGVG +I+ A F S++DF Sbjct: 830 DTLPPSINKSTKEFSVVKNGEHDGIIFGLGAIKGVGGAAIENIIAERDAKGEFKSMDDFV 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 SR+D K+N++V ESL+ AG D FG+SR LLQ+++NI + + + R N E++F Sbjct: 890 SRIDPFKVNKKVFESLIKAGCFDEFGFSRKMLLQNVENIVEACKNAAQIRKNAAESLFGE 949 Query: 930 EKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + KI + + EQ +G Y SGHPLD YK + K+ E + Sbjct: 950 DDSMNDVKINFVTINDEFDIKQILKFEQESVGIYLSGHPLDDYKDEINKIKYTLSSEFES 1009 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I + + + T+ G ++G + + E F Sbjct: 1010 LPQSAEILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAVF 1053 >gi|331005660|ref|ZP_08329027.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989] gi|330420518|gb|EGG94817.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989] Length = 1241 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 409/1107 (36%), Positives = 587/1107 (53%), Gaps = 86/1107 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 ++ + FVHL++H+ +SL++G + + ++ K+A PA+A++D N + ++F Sbjct: 1 MSDPTTNTNPFVHLRLHTEFSLVDGTVRIKPLVAKVAEMGMPAVAVSDVCNFYGLIKFYT 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++PIIG + T+ K I L GY+ +I L+SR + Sbjct: 61 AAQNAGVKPIIGADFWM-------RTSGDKENSDKPTLISLYAMNHVGYRNIILLISRAF 113 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 Q I W+ E +EG+I L+GG G I A + A L +K F D Sbjct: 114 QEGQYHGDPYILREWISEC-SEGVIALSGGRQGDIGVALLSDHRDEAMAYLEGWKADFPD 172 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R Y+ LQR + V LA ++P+VATN+ FL D+EAH+ + + Sbjct: 173 RFYLELQRTGRENEEDYLHAAVALASEQQIPVVATNDVRFLVGSDFEAHESRVCIGEGRT 232 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + R R + YL+ EM +FSD+P+AL NTVEIA+RC+ +++ LP F Sbjct: 233 LDDPRREHRYSDQQYLRTPEEMAELFSDIPQALANTVEIAKRCTVDIELGNYYLPDFPIP 292 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-------------------- 338 + E + G + + + +Y Sbjct: 293 DNFRKDPFFEAHYPYATLEGFAQQAMEEKWEEKKETPEYLAMVETNVFFQKVSYEGLFER 352 Query: 339 --------------------QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 RL FEL++I +M F GYFLIV DFIQWAK +IPVGPGR Sbjct: 353 LETILDKEDNDYKDKKQPYLDRLRFELDIIMQMGFPGYFLIVMDFIQWAKDQDIPVGPGR 412 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GSGAGS+ AYA ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI+YV + Y Sbjct: 413 GSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVIKYVSDTY 472 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498 G + V+QIITFG++ AKA +RDV R Y D+L K+IP D + ++ Sbjct: 473 GKDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPMDVGITLQKAFDQEEP-L 531 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 RE D + E+S KLEG+ R+ HA G+VI L+ P++ D VTQ+ Sbjct: 532 REFLDGDEEAQEIWEMSLKLEGITRNVGKHAGGVVIAPTKLTDFSPLFCDETGKGLVTQY 591 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETY 609 + +E AGL+KFDFLGL+TLT++ ++ + A +D++ IP DD TY Sbjct: 592 DKNDVESAGLVKFDFLGLRTLTIIDWAVKMINATRKKAAGANSHQVLDIAFIPLDDPATY 651 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YN 662 +L T T +FQLES GM+ ++ +QPD IED+ ALV+L+RPGP+ + +V + Sbjct: 652 RMLKTAETTAVFQLESRGMKDLIKRLQPDDIEDLTALVALFRPGPLQSGMVDDFINRKHG 711 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + H + P+L T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK Sbjct: 712 RAEVAYPDAKYQHDKLKPILGPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKKKP 771 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM KQ+ F GA GI T+A+ IF+L+ KFA YGFNKSH+AAYAV+SYQTAW+KTH Sbjct: 772 EEMAKQRAVFEGGAKDQGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYAVVSYQTAWLKTH 831 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841 YP +F+AA+M+ +MD EK+ F ++ R + ++PP VN F V DN I Y L A Sbjct: 832 YPAQFMAATMSSDMDKTEKVVIFVEECRSMKLNLLPPDVNQGDFQFTVDIDNNIIYGLGA 891 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS---- 897 IKG+G +I+EA PF +L DFCSRVD++K+N+R L++LV +G+ D G Sbjct: 892 IKGLGEGPVENIIEARKSGPFKNLFDFCSRVDARKVNKRALDALVRSGSFDTIGPDGDNP 951 Query: 898 -------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----- 945 R LL +L K A N+ ++F D+ S Sbjct: 952 ERDLDMTRAILLAALPEAVKTADQALANQNAGMVDLFGDSLLGQGDENEDPYESFYRTRR 1011 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 R E +G Y +GHP+D Y+ ++ + VA I++A +VV+ + Sbjct: 1012 WTMKERLNGENDTIGLYLTGHPIDEYEDEVKHLVSSRISRIVA--DRKTIKIAGLVVAMR 1069 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KT++G +G++T + E F Sbjct: 1070 VMKTKRGDTMGFITLDDRTARMEVAVF 1096 >gi|77360939|ref|YP_340514.1| DNA polymerase III subunit alpha [Pseudoalteromonas haloplanktis TAC125] gi|76875850|emb|CAI87071.1| DNA polymerase III, alpha subunit; the entire polymerase contains 10 subunits [Pseudoalteromonas haloplanktis TAC125] Length = 1163 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 425/1050 (40%), Positives = 596/1050 (56%), Gaps = 43/1050 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL+VHS +S+++G I+ K Q PAIAITD NL + F + A + Sbjct: 1 MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G + + I +L +GY+ L L+S+ Y Sbjct: 60 TGIKPIVGADFWL----------RSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E+ GLI+L+G G + +A N+ V E + +K+ F D Y+ Sbjct: 110 VFHRPVIDRDWLIELKA-GLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYL 168 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 169 ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ + + Sbjct: 229 RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGT-----YFLPDYPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE RL + + +Y +RLD EL VI M F GYFLI Sbjct: 284 GSLKIEDFLVKVSQDGLEERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ K+I Sbjct: 404 VDFCMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + R +EA D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFDIEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +LD +R Sbjct: 523 TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ + ++PD ED+IALV+L+RPGP Sbjct: 583 PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V I Y + AIKGVG I+EA PF L DFC+RVD K+LN+RV E L Sbjct: 823 FTVNLQGEIVYGIGAIKGVGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882 Query: 886 VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 +++GALD G R LL SL + + A K ++F + + Sbjct: 883 IYSGALDQLGPEKTQSGRATLLASLKSAMRAADQHNKAELLGQSDLFGLLATEPDEVEQA 942 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 K + + + E+ LG Y +GHP++ Y+ L+ + T R A Sbjct: 943 FIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRDVVSTAAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +V+S + +KG+R +T + + + Sbjct: 1003 LVISARVLINKKGNRWALITLDDKSARIDV 1032 >gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus sp. SIP3-4] gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus sp. SIP3-4] Length = 1149 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 416/1037 (40%), Positives = 620/1037 (59%), Gaps = 34/1037 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P+F+HL+ HS YS+++G + + + + AAD+ PA+A+TD +NLF A++F + A G Sbjct: 2 SQPTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++GC L ++ + N ++LL T GY +L EL+SR YL +Q + Sbjct: 62 LKPVLGCDLWLENETNRDQP----------YRLLLLCQTHAGYLKLCELLSRAYLENQHR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E G EGLIML+G +G + +A + Q A + LF +R Y+ L Sbjct: 112 GRAEIKRQWLVEAGGEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIEL 171 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR + S+ + LA +LP+VAT+ F+ +D++AH+ + +A V++ R Sbjct: 172 QRAGHAQQEFYISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRR 231 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ TP+ + K ++EM ++F+D+P+AL N+VEIA+RC+ L + LP+F + + Sbjct: 232 PKHFTPEQFFKTQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL- 290 Query: 305 KEEENELR---NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + L + Y RL+FE N+I +M F GYFLIVA Sbjct: 291 ---DEYLVVQAKLGLEKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDID Sbjct: 348 DFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ RD VI YV++KYG V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN Sbjct: 408 FCQEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPN 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +S + + + +E R + V+ LLE++ +LEGL R+ HA G++I +S Sbjct: 468 ELGITLSDA-LEKEPQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISD 526 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKV 596 P+Y + V+Q++ +E GL+KFDFLGL+TLT+L +L+ + + Sbjct: 527 FSPIYCQQNGESLVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D +P +D TY LL + T +FQLES GM+ L+ +PDC EDIIALV+LYRPGP+D Sbjct: 587 DFETLPINDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMD 646 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + RK+G++++ HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LRRA Sbjct: 647 LIPDFCRRKHGQQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRA 706 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK KEEMD Q+ F+ GA KNG + A +F+L+ KFA YGFNKSHAAAYA+++Y T Sbjct: 707 MGKKKKEEMDAQRAVFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHT 766 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835 A++K HYP FLAA+M+ +M+N + + F D ++++ P +N FK + D ++ Sbjct: 767 AYLKAHYPAAFLAATMSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQV 826 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L A+KG G I+ A A+ PF L DFC R+D +K+NRRV+ESL+ AGA D Sbjct: 827 LYGLGAVKGTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKL 886 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R LL + A+ + + ++F + + TL K + + + + Sbjct: 887 EPNRAALLAGVSLAISAAE--QSGAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQ 942 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LGFYFSGHP + YK L + LA +V+ + + T++G Sbjct: 943 EKSALGFYFSGHPYEGYKRELATFVRTTLGNLK--PQDQPQLLAGVVMGIRIRMTQRGK- 999 Query: 1015 IGWVTFSEPAKEYEANF 1031 + VT + E Sbjct: 1000 MAIVTLDDATSRIEIVV 1016 >gi|255994597|ref|ZP_05427732.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989] gi|255993310|gb|EEU03399.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989] Length = 1182 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 376/1077 (34%), Positives = 577/1077 (53%), Gaps = 77/1077 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VHS YSLL+GA + +++ + A ++A+TD +F +EF ++ GI+P Sbjct: 2 SFTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + ++LLV EGY+ LI+LVS + Sbjct: 62 IIGCEVYVARGSIEVQEK-------SPNHLILLVKNEEGYKNLIKLVSIAN-KEGFYYKP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 RI L E ++GLI L+ +G I + + A+K + ++ ++G+ Y+ +Q Sbjct: 114 RID-ENLMERFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQN 172 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ ++ +++ + LVATN+S ++ +ED + HDVL+ + +S + R + Sbjct: 173 HGLDKEQIINRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMK 232 Query: 248 VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D + + + + F +A+ENT+E+A +C+F ++ LP F E + Sbjct: 233 FPSDDFYLKSEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGE----T 288 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +E LR GLE R + R+RL+FEL+ I M + YFLIV DFI + Sbjct: 289 KEGYLRKLCCEGLEKRHKN-------VTNELRERLEFELDTIHNMGYDEYFLIVHDFIHY 341 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK IPVGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC+DR Sbjct: 342 AKTRGIPVGPGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDR 401 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV +KYG +RVAQI+TFG+L+AKAA+RDVGR + Y +VDRL K +P Sbjct: 402 RQEVIDYVIDKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVPPGLGVT 461 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +S DS F+E +++++ +LEG+ R+A THAAG+VI + VP+Y Sbjct: 462 LSDAL--KDSNFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIY 519 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605 + + M IE+ GL+K DFLGLK LT+++ + G+K++ +DD Sbjct: 520 KSDKGFCTQMT--MTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGIKINFDDSNYDD 577 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + Y L+++ T GIFQLES GM + ++ ++PD IEDIIA +SLYRPGP+D+ Y K Sbjct: 578 SKVYELISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSKDNYIFNK 637 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 ++I HP + P+L T G ++YQEQVMQI + L+GYS AD++RRAM KK +EM Sbjct: 638 RHPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADEM 697 Query: 726 DKQKERF------------------------------ISGASKNGISKTIAVNIFELLAK 755 K++E F + G K GI K + IF+ + Sbjct: 698 AKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEMES 757 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAAAYAVISYQTA++K HYPVEF+A+ + N K+ ++ ++AR NI+ Sbjct: 758 FASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNIE 817 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873 I+PP VN V F+ N I + LA +K VG A HI++ K +D++ F +D Sbjct: 818 ILPPDVNKSGVTFEARGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDMD 877 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K+N+ VLE+L+ AGA F + L ++ + + K T ++F + Sbjct: 878 ISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEIE 937 Query: 934 FSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKG---- 982 + + + + E+ LG Y + HP+ Y+ L I Sbjct: 938 GEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDVLGNINPEADS 997 Query: 983 ------YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +S A G ++LA ++ + + T+KG + + + E FP Sbjct: 998 DDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIFP 1054 >gi|169334376|ref|ZP_02861569.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM 17244] gi|169259093|gb|EDS73059.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM 17244] Length = 1215 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 359/1074 (33%), Positives = 581/1074 (54%), Gaps = 71/1074 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G + + + +IAITD N+F +EF + GI+P+ Sbjct: 5 FTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKEGIKPV 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC++ + M D +L GY+ L+++VS Y + R Sbjct: 65 LGCEIYMTMGDRKGRDPMNDK---QSFHFILFAENEIGYKNLMKVVSIAYT-EGFYYKPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ +EG+I + G I R + A+K L F ++G D ++ +Q H Sbjct: 121 ADFDLLEKY-SEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFLEIQDH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +++++A + + L+ATN+S +L + D EAHDVL+ V ++ +S ++R R Sbjct: 180 GLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDENRMRF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y+K EM +F PEA+ENT +IA RC+ ++ LP F E Sbjct: 240 PNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGM----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L+ + GL ++ +RL++EL VI M F+ YFLIV DFI ++ Sbjct: 296 QQYLKKLCMDGLYK-------KYDNVTKELTERLEYELGVINDMGFNDYFLIVWDFINYS 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++IPVGPGRGS AGS+ +Y L IT IDP++++L+FERFLN +R+SMPD DIDFC ++R Sbjct: 349 RTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 E I YV KYG + V+QI+TFG+L+ KAA++D+ R++ + + Q +++ KLIP++ + Sbjct: 409 HEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAKITI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AIA + + DP++ +LL+ ++ +EG+ RH+STHAAG++I DR +S VP+Y Sbjct: 469 E-KAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPLYL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + D QFNM +E+ GL+K DFLGLK LT+++ +LD + +G+ VD+ I D Sbjct: 528 N--KDSIAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGIDVDIDNISLTDQ 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + ++ T+G+FQL S GM+ ++ ++P+ EDIIA +SLYRPGP+D I Y + K+ Sbjct: 586 NVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMDMIPTYIDNKH 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 I +HP ++P+L T G+IIYQEQVMQI + L+GYS+ +D++RRAMGKK E + Sbjct: 646 NPANISYLHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLIRRAMGKKKHEVIA 705 Query: 727 KQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 K++E F + G GI + I++L+ KFA YGFNKSHAAAY Sbjct: 706 KEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFASYGFNKSHAAAYG 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++KT+YP EF+AA +T + + ++ I+++PP VN F V Sbjct: 766 VISYQTAYLKTYYPAEFMAALIT-VYIGSDDRMLYMNHLKEKGIKLLPPDVNKSYSRFTV 824 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + + + L A+KG+G + I++A + F S DF ++++ LN++ +ESL+ +G Sbjct: 825 DNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFNSLNKKGVESLILSG 884 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947 A D G +R +L ++ K + ++ ++T+ + Sbjct: 885 AFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEENEQIEMTIPTMAEFE 944 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN------------- 994 + + + E+ V+G Y SGHPL ++ L K E N Sbjct: 945 TKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTSMQLYEVYDRYGNKNSEEEEEAEPQPPV 1004 Query: 995 --------------IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 I + +V + T+K ++ ++T + + E FP Sbjct: 1005 NNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLTSDMEIVVFP 1058 >gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99 Alcoy] gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99 Alcoy] Length = 1148 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + ++V LA +LPLVATN+ F++E+D++AH+ + + ++ R + Sbjct: 173 GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L + LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|219685116|ref|ZP_03539936.1| DNA polymerase III subunit alpha [Borrelia garinii Far04] gi|219673212|gb|EED30231.1| DNA polymerase III subunit alpha [Borrelia garinii Far04] Length = 1161 Score = 760 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 398/1036 (38%), Positives = 611/1036 (58%), Gaps = 23/1036 (2%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 14 GMSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 74 KVGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-E 130 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y Sbjct: 131 GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH D+ ++V+ + +PL ATN+S +++ ED A D+++ + S Sbjct: 190 LELQRHGIKDQDIVNERLVEYSRKLGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSD 249 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300 ++R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 250 ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + GL+ + R +EL+VI RM F GYFLIV Sbjct: 310 FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI Sbjct: 360 WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP Sbjct: 420 DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 480 DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + Sbjct: 538 DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I Sbjct: 598 IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 658 FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 ++EM++ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L Sbjct: 778 ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIK +G I++ + + S EDF RVD K +N++ LES + +G D +R Sbjct: 838 AIKNLGEIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQR 957 L ++LD + + + N+ ++F KG + + F + S E E+ Sbjct: 898 TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016 +LGFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + ++ Sbjct: 958 LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSVVQFSGILNSVKVIQTKRNNAKMA 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 + + + F Sbjct: 1018 FGVIEDFKGAIDIVVF 1033 >gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1144 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 412/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ + Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 60 ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens] gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens] Length = 1148 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L T+ S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLEAPDTIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R + Sbjct: 173 GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELAVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36] Length = 1177 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 497/1068 (46%), Positives = 678/1068 (63%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL+ HS YSLLEGAL L + D PA+A+TDTNN+F+ALEFS Sbjct: 1 MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ L L E GLI LTGG+ GP+ + AE + F DRLYV Sbjct: 115 GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D + E V++AY +PLVATN+ F + YEAHD L+ +A Sbjct: 174 ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPKADMYEAHDALICIADGA 233 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q+ R R+T HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+ + Sbjct: 234 YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E EL+ +A GL+ RL I ++Y +RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G + Sbjct: 524 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ + S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R + + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I E DKPF +L D RVD Sbjct: 824 PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ QSLD + Y+ + + + + ++F E G Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987 + + ++ R E + +GFY SGHPLD Y +++ +E Sbjct: 943 DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002 Query: 988 ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65] gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65] Length = 1164 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 404/1051 (38%), Positives = 597/1051 (56%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL+VH+ YSL++G + + ++ ADQQ A+ I+D +N+F+ ++F A Sbjct: 1 MSNNNSFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PII + I+ D++ +I L+ GY+ L ELVS + +Q Sbjct: 61 TGIKPIISADVFIENPDDM----------ANPYAITLIAQNDVGYRNLTELVSAGFTKNQ 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ W +E +GLI L+G G I+ A + ++A RL + +LF R Y+ Sbjct: 111 HHDRAQLKQEWFEEK-ADGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYL 169 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R D + ++LA ++P+VATN+ F+ ++D++AH+ + + + Sbjct: 170 ELQRTQRPNDEALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDP 229 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + Y K + +M +F D+P A+ N+VEIA RC+ + + LP + + Sbjct: 230 RRERRYSDQQYFKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDG-- 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFL 358 E + + GLE RL ++ R+ RLDFEL++I +M F GYFL Sbjct: 288 --LTENEFFKKISYEGLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFL 345 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFIQWAK ++IPVGPGRGSGAGS+ AYA ITDIDPL + LLFERFLNP+R+SMPDF Sbjct: 346 IVMDFIQWAKDHDIPVGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDF 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC ++RD VI YV + YG E V+QI+T+G++ AKA +RDV R Y D+L KL Sbjct: 406 DIDFCMEKRDRVISYVADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + +A+ ++ E +D + E++QKLEG+ R HA G+VI Sbjct: 466 IPGDPGMTL-AKALDEEPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTK 524 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRG 593 L+ P + VTQF+ +E AGL+KFDFLGL+TLT++ +L+ Sbjct: 525 LTDFSPTLCEEDGTGLVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNE 584 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + + IP DD +Y LL T +FQLES GM+ + ++PD IE++IALV+L+RPG Sbjct: 585 EPLRIEEIPLDDAPSYKLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPG 644 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 P+++ + + NRK+G+ ++ HP + +L+ T GVI+YQEQVMQIAQ+L+GY+ Sbjct: 645 PLESGMVDDFINRKHGRAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYT 704 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM KQ+E F GA+ G +A+ IF+L+ KFA YGFNKSH+ Sbjct: 705 LGGADMLRRAMGKKKPEEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHS 764 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYAV+SYQT W+KTHYP F+AA +T +M N +K+ F ++ R+ + ++ P VN Sbjct: 765 AAYAVVSYQTLWLKTHYPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEY 824 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884 F V D I Y L A+KGVG I+ A + PF L FC VD K+N+RVLE+ Sbjct: 825 GFTVNDSGAIVYGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEA 884 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLE- 941 LV GA D G +R L S+++ K A KN ++F E+ + + Sbjct: 885 LVRCGAFDKIGPNRSVLFASIEDALKAADQSAKNAAAGMMDMFGVVEEEANINPYDEYKN 944 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 K + + E+ LG Y +GHP D Y+ L+ + A ++A +V Sbjct: 945 KVRDWTPKQKLKGEKDTLGLYVTGHPFDEYETELKNIARTRLANIQA--DKKPQKIAGIV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V ++ KT++G + VT + + F Sbjct: 1003 VDQRVMKTKRGGNMAIVTIDDRTARMDVRLF 1033 >gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby] gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby] Length = 1148 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 425/1039 (40%), Positives = 621/1039 (59%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+ E GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIPEFSR-GLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R Sbjct: 173 GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQH 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 1144 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 413/1032 (40%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ + Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 60 ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ + E+ L KA GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1] gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1] gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1] Length = 1144 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1144 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 413/1032 (40%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ + Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 60 ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ + E+ L KA GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|320531635|ref|ZP_08032577.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str. F0337] gi|320136164|gb|EFW28170.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str. F0337] Length = 1197 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 359/1070 (33%), Positives = 567/1070 (52%), Gaps = 54/1070 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YS+L+GA + + + + QPA+AITD +F A EF A AAGI+P Sbjct: 15 DFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKP 74 Query: 70 IIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + + + + + + LL EG L+ + S Sbjct: 75 IIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNEGLHNLMRMDSF 134 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L Q ++ RI L + GLI TG S + A + + +F Sbjct: 135 ASLEGQWGKAPRIDRELLSRY-SGGLIGSTGCPSSEVQTRLRLGQWDEALRTAGELQDIF 193 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + YV L H ++ +++LA PL+ATN+S ++ ED D ++ + Sbjct: 194 GKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAMLCINS 253 Query: 237 STVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +V+S DR R D Y SEM +FS++P+A +NT+ +A +C + F Sbjct: 254 GSVLSDPDRFRFDGDTYYLRPGSEMRRLFSEMPQACDNTLLVAEQCDVHFRTVD-EGASF 312 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + +E+ + G++ R G +D R++ ++E++VI +M F G Sbjct: 313 MPAFPVPEGETDESWFIKECWRGMDHRF------NGDIPEDCRKQAEYEISVITQMGFPG 366 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR L+FERFLNP+R+SM Sbjct: 367 YFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFLNPERISM 426 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D R + PY+ DRL Sbjct: 427 PDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYPYAVGDRL 486 Query: 476 CKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +S++ I + FR+ DP +++E+++ LEG+ R Sbjct: 487 TKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVELAKGLEGMTRQWG 546 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL+ LT++ +L Sbjct: 547 VHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNLTVISDAL 606 Query: 587 DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + G D+ + DD TY LL+ TLG+FQL+ GMR L M+PD EDI A Sbjct: 607 ENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPDNFEDISA 666 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 + +LYRPGP+ ++ Y RKNG +++V IHP +DP+L T G+I+YQEQVM+IA Sbjct: 667 VGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKDALDPILGTTHGLIVYQEQVMKIA 726 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 L+G+S+ +AD LR+AMGKK + + K F +G + G SK +++++ FA Y Sbjct: 727 TDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDVVVPFAKY 786 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+ + + R I ++PP Sbjct: 787 AFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHMGITVLPP 846 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 VN F D + + L+A++ VG I+ A + F S EDF +V + N Sbjct: 847 DVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAAREEKGEFTSFEDFLDKVPAVVCN 906 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 +R ++SL+ AGA D G++R L ++ V++N ++FA G D Sbjct: 907 KRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLVGGPDDAD 966 Query: 938 -----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + + + E+ +LG Y S HPL + +L K+ K E Sbjct: 967 DSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLADKEISEL 1026 Query: 987 ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ S +K T++G+ + A E FFP Sbjct: 1027 HENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSVEVLFFP 1076 >gi|332038321|gb|EGI74766.1| DNA polymerase III alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 1163 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 422/1050 (40%), Positives = 592/1050 (56%), Gaps = 43/1050 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL+VHS +S+++G I+ K Q PAIAITD N + F Sbjct: 1 MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + + +L +GY+ + L+S+ Y Sbjct: 60 AGIKPIVGADFWV----------RSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E+ GLI+L+G G + +A N+ V E + +K+ F D Y+ Sbjct: 110 VFHRPVIDREWLVELKA-GLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYL 168 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R +R + V+LA +LP+VATN +FL E++EAH++ +A+ + K Sbjct: 169 ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + + YLK +M +FSD+PEAL+NTVEIA+RC+ +Q+ + + Sbjct: 229 RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGT-----YFLPDYPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE L + +Y +RL EL VI +M F GYFLI Sbjct: 284 GSLKIEDFLVKVSQDGLEERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + R +EA D V L+++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFDVEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++D R + Sbjct: 523 TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKD 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD ++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V N + H + P+L T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG I+EA PF L DFC+RVD K+LN+RV E L Sbjct: 823 FTVNLEGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882 Query: 886 VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 ++AGALD G R LL SL + + A K ++F + + Sbjct: 883 IYAGALDQLGPEKTQSGRATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQA 942 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 K + + + E+ LG Y +GHP++ Y+ LR + T R A Sbjct: 943 FIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELRHYTSGKIVDLQPTNRDVFATAAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +V++ + +KG+R VT + + + Sbjct: 1003 LVIASRVLINKKGNRWALVTLDDKSARIDV 1032 >gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1] gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1] Length = 1158 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 411/1047 (39%), Positives = 581/1047 (55%), Gaps = 39/1047 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SF+HL+VH+ +SL++G + + +L PA+AITD NNL + F + A GI Sbjct: 2 STSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G + + LL ++ +GY+ +I ++S+ Y L Q + Sbjct: 62 KPICG----------ADVVVAEDDDVDSRYRFTLLATSNKGYKNIIAIISKGYQLGQVEG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I W+ E +E +I L+G G I + A+ RL + +F +R YV LQ Sbjct: 112 RPIIQREWI-ETHSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQ 170 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R R + VV LA + P+VATN+ FL E++EAH+ + + + R Sbjct: 171 RTSRPGEESYIHAVVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRRK 230 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + + Y K EM +F D+PEALENTVEIA+RCS + + LP + E Sbjct: 231 RRYSEEQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGM---- 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARMKFSGYFLIVA 361 E + GL R G Q+Y RLDFEL +I +M F GYFLIV Sbjct: 287 TMEEFFSKLSYDGLIERFNFLTKKYGERIEKRRQEYWDRLDFELTIINQMGFPGYFLIVM 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI YV YG + V+QIITFG++ AKA +RDV R PYS D+L KLIP Sbjct: 407 FCMDNRDRVIDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPF 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A+ ++ E D ++E++ LEG+ R+ HA G+VI L Sbjct: 467 EIGMTLK-KALEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVVIAPTKLID 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKV 596 P+Y + VTQ++ +E+AGL+KFDFLGLKTLT++ ++ + + Sbjct: 526 FAPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAINELEGKPPL 585 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+SLI +D TY LL T +FQLES GM++ ++ + P EDIIALV+LYRPGP+ Sbjct: 586 DISLIDLEDRSTYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLG 645 Query: 657 NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + H + P+L+ T G+I+YQEQVMQIAQ+L+ +SL Sbjct: 646 SGMVDDFINRKHGRAELAFPHPDYQHQDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGG 705 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK E M +Q+ F+ GA KN I K ++ NIF+L+ KFA YGFNKSH+AAY Sbjct: 706 ADLLRRAMGKKKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYGFNKSHSAAY 765 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K HYP F+AA ++ +M N +KI F ++ R + + P+VN F Sbjct: 766 ALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRSMKLALELPNVNESVFKFT 825 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 V I Y L AIKGVG I+EA D PF+ + DFC RV +K+N+RV+E+LV + Sbjct: 826 VNPKGAIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRVG-RKVNKRVMEALVRS 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVE 946 GA D G +R L +D K A KN+ ++F E+ T + Sbjct: 885 GAFDTIGPNRATLFACIDEALKRAVQDAKNQDAGMMDLFGITVEENTEDAYREIGIQHEW 944 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R + E+ LG Y +GHP+D Y+ +R+ + + +A ++V + Sbjct: 945 PPRQRLDGEKDTLGLYVTGHPIDEYEKEIRRFVRSKIVDLQPKRGDTQV-MAGLIVDLRI 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K++KG I +VT + + E FP Sbjct: 1004 TKSKKGGNIAFVTLDDRSARIEVTVFP 1030 >gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1] gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1] Length = 1144 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 57 ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GL Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +VV+ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|226226143|ref|YP_002760249.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27] gi|226089334|dbj|BAH37779.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27] Length = 1165 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 379/1047 (36%), Positives = 567/1047 (54%), Gaps = 37/1047 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL HS YSLL+GA +++++ + + PA+AITD N+ +A EF +KA AGI+P Sbjct: 2 SFVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + + D + P +VLL GY+ L++L S Y + Sbjct: 62 ILGMEAYVAPGDRRQRGRPAPGVKP-YYHLVLLARDIVGYRNLVKLTSLGYT-EGFYTKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L + +EGLI+ + +G + + A + + +LF R ++ +Q H Sbjct: 120 RIDRELLAQY-SEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEVQAH 178 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + ++++ LA LP+VATN++ FL ED++AHDVL+ + + +DR + Sbjct: 179 TSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRMKY 238 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 Y K E+ + F + L NT+ IA +P F E E Sbjct: 239 DDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQF-AKKYYVPSFPLPEG---VATEN 294 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L A G + R A ++RLD+EL VI + ++GYFLI ADFI+ A+ Sbjct: 295 DMLVQIATDGAKERYGDPLPAN------VQERLDYELGVITKTGYAGYFLITADFIKAAR 348 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 IPVGPGRGS AGS+ AYA ITD+ PL F LLFERFLNP+R+SMPD D+DFC +RR Sbjct: 349 DRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFERRG 408 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV+ KYG + V QI+TFG+++++AA++DVGR L ++ D L KLIPN P ++ Sbjct: 409 EVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNFSLT 468 Query: 489 LQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ I + D +LL+ + KLEGL RH HAAG+VI PL + VP+ Sbjct: 469 VKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVPICT 528 Query: 548 DVRSD--------LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 + VTQ++M +EKAG++K DFLGL TLT++ +L + +R G V L Sbjct: 529 QASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKDVVL 588 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656 F D +TY +L T G+FQ ES L+ M+ D +D++A +L RPGP+D Sbjct: 589 EERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPGPLDAG 648 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 VY RK G+E V P ++P+L T GVI YQEQVM+IAQ+L+G SL+EADVLR+A Sbjct: 649 MHNVYIRRKRGEEPTVYALPELEPILSNTYGVITYQEQVMRIAQVLAGISLAEADVLRKA 708 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 +GKK E + K+ +F A G SK I + + F YGFNKSH+ AY+V++Y T Sbjct: 709 VGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKSHSVAYSVVAYHT 768 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835 A++KTHYP EF+AA ++ + E++ K+ +AR+ I+++ P VN F V GD RI Sbjct: 769 AYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNESGWRFTVIGDKRI 828 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L AI+ VG ++ A + F +L D C RVD + N+RV E+LV AGA D G Sbjct: 829 RFGLGAIRNVGKGAIDSLLAARTEGAFPTLHDLCGRVDLRLCNKRVFEALVAAGACDTLG 888 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVEN 947 R QLL +LD+ A ++ ++F G + L ++ + Sbjct: 889 GHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNNAAPQMLPNIAMWS 948 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 S R + E+ +LGFY SGHPL+ ++ + + + +V + +++ Sbjct: 949 ESERLQREKELLGFYISGHPLEPHRTECELFATSTVAKLGTWTA-EPVTIGVVVTAIRKQ 1007 Query: 1008 KTRK-GSRIGWVTFSEPAKEYEANFFP 1033 +++ G+ +T + + E FP Sbjct: 1008 ISKRTGAEFARLTVEDFSGSSEVLVFP 1034 >gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b] Length = 1148 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 425/1039 (40%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + +++ LA +LPLVATN+ F+ E+D++AH+ + + ++ R + Sbjct: 173 GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315] gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia J2315] Length = 1177 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL +GL+ L+G G I A + + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + +M ++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QL+ S+ + A E N +F + L + Sbjct: 886 GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1158 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 406/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHLQVHS +S+++G + ++ + A+ +TD N + F +A ++G Sbjct: 2 SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG + + Q + LL EGY+ + L+S+ Y Sbjct: 62 VKPIIGTDVLV----------QSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E G+I+L+GG +G + + ++ + + +++ F D Y+ L Sbjct: 111 DLPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R ++LA +LP+VATN+ FL ED+EAH++ +A+ + R Sbjct: 170 TRTGRPDEERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T Y ++ EM +F+D+P ALENTV IA+RC+ +++ + + Sbjct: 230 PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGE-----YFLPQFPTGD 284 Query: 305 KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE R + + +Y +RL EL+VI +M F GYFLIV Sbjct: 285 LSTEDYLVKRAKDGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YGH V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P Sbjct: 405 FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + +E AD V ++++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R K Sbjct: 524 FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 584 DINAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643 Query: 657 NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT EMDN +KI + + ++++PP +NT F Sbjct: 764 ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823 Query: 830 VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V +N I Y + AIKGVG ++EA D F +L D C+RVD KK+NRR ESL+ Sbjct: 824 VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 +GA D G R L Q+L++ + + K+ ++F T + + + + Sbjct: 884 SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LG Y S HP+ Y L +E V RG + +V+S + Sbjct: 944 TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRV 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KG+ IG T + + + F Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029 >gi|269798464|ref|YP_003312364.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008] gi|269095093|gb|ACZ25084.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008] Length = 1135 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 367/1031 (35%), Positives = 600/1031 (58%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + ++LL T EGY+ L+++VS+ R Sbjct: 64 IGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + ADP+V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ KNGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD+K +N+R+LESL+ G++D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ N+F + D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + T++ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36] gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36] Length = 1159 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 394/1048 (37%), Positives = 584/1048 (55%), Gaps = 38/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL +HS +S+++ + + + ++ PAIA+TD N+ + ++F Sbjct: 1 MAE-PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQR 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + Q + + +L +GY + L+S+ Y Sbjct: 60 AGVKPIIGADFWV----------QSEEYPEEQFKLTVLAKDNKGYNNITVLISKAYSRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I +WL E EG+I+L+G +G I +A + +A + L ++ F D Y+ Sbjct: 110 VDGRAIIDKAWLAE-HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V A H+LP+VATN+ +FL ++++AH++ +++ + K Sbjct: 169 ELIRTGRQDEEAYLHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDK 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + + YL++ EM +F+D+PEAL N+VEIA+RC+ +++ Sbjct: 229 RRPRLYSKEQYLRSEDEMCELFADIPEALANSVEIAKRCNATVRLGEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + L + GL L + Y RL+ EL VI M F GYFLI Sbjct: 284 GELSTADFLVKVSEDGLVERLDFLFPDPAERERQRPAYEDRLEIELKVINDMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP ++ + R E D V L+++++ LEG+ R+A HA G+VI + Sbjct: 464 PGDPGMTLAKAW-DVEPRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGV 594 + P+Y D + PVTQF+ +E+AGL+KFDFLGL+TLT++Q +L + Q Sbjct: 523 TDFAPLYCDDSGNNPVTQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKK 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++ + I D + LL T +FQLES GM+ + ++PD ED+IALV+L+RPGP Sbjct: 583 EIRIESIDITDRRCFDLLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAQYQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM+KQ+ F GA NG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTHYP F+AA M+ +MDN EK+ + + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHYPSYFMAAVMSADMDNTEKVVTLVDEVERMGLTLLPPDVNKGLFK 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D+ I Y + AIKGVG I+ A F L DFC+RV+ KK+++R++E L Sbjct: 823 FNVQEDHTIIYGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 ++AGALD G R L +L K A ++F + Sbjct: 883 IYAGALDKLGPHRAALHATLPEAMKAAAQHAMAEAYGQSDLFGILTTEPEEIESKFADVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 V E E+ LG Y +GHP++ Y +++ ++ T RG + +V+S Sbjct: 943 EWPDKVWLEGERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVTAVGLVISA 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q K T+KG+R+G + + + FF Sbjct: 1003 QVKVTKKGTRMGILEIDDKSGRLSVMFF 1030 >gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1144 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 411/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ + Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + +L + GYQ L L+S+ Y G I WL E+ Sbjct: 60 ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+++GG G + R + + E+ + ++ F DR ++ L R D Sbjct: 110 EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALENTVEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804] gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii] Length = 1163 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 407/1055 (38%), Positives = 614/1055 (58%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + +P+FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVNPTPAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++PI GC + + D+ + ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPIAGCDVWLTNDDDPEKP----------FRLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +QG+ I WLQ G +GLI+L+GG +G I A ++ A + LF Sbjct: 111 LENQGRGRAEIRREWLQ--GRQGLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL +Y+AH+ + +A + Sbjct: 169 AFYIELQRAGADGDEAYTQAAMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D YL + EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 229 LADPRRVRRFTKDQYLLSTEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + GLE RL + Y +RL +E I +M F G Sbjct: 289 DGISL----DDYLVQLSEEGLEKRLEFLFPDPAERDAKRAQYYERLRWECKTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDGL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +PA P S + + D+ F+E + V L+++++ LEGL R+ HA G++I Sbjct: 465 SKLIPFNPADPWSLDRTLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Sbjct: 525 APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRRFN 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + D+ +P DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LY Sbjct: 585 ESKRDFDIMALPLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + HP ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRATVDYFHPDLEATLKSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+ + ++PP VN F Sbjct: 765 YALIAYQTAWLKAYHPTEFLAATISSDMDDTDKVQVFCRDAQDNGVLVLPPDVNASGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 + + + Y L A+KG G I+ A AD PF +L DFC RV+ + Sbjct: 825 EPVADEHTREGRPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFANLFDFCRRVNKHAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 885 NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQVSLFGDDSGDVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + N + E+ LGFYFSGH D ++ +R++ + Sbjct: 943 -ELSKVAPWNLHTKLTEEKSALGFYFSGHLFDHWRDEVRRIVPMPLARVEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + TR+G + + + + E + F Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQVEISVF 1033 >gi|77164364|ref|YP_342889.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus oceani AFC27] gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus oceani AFC27] Length = 1158 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 434/1042 (41%), Positives = 618/1042 (59%), Gaps = 30/1042 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL++H+ YSL++ + + ++ + PA+A+TD +N+F+ ++F + A AAG+ Sbjct: 2 APSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + G V LL GY+ L L+SR Y Q + Sbjct: 62 KPIIGADIFL----------VGSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ WLQ + +GLI+L+GG G + +A + A K L ++ LF R Y+ L Sbjct: 112 IPRLQWDWLQNL-NDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELH 170 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + + LA + P+VATN+ FL +D+EAH+ + + ++ RP Sbjct: 171 RTGREGEEDYLHAAIALALARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRRP 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL+ SEM +F+DLPEALENTVEIARRC+ L + LP F E I+ Sbjct: 231 RHYSEQQYLRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSIEA 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E R L + A + Y RL EL VI +M F GYFLIVADFI+ Sbjct: 291 FLAAEARRGLEQRLVKLYPREAKRETEQP-AYEARLAEELAVINQMGFPGYFLIVADFIR 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC + Sbjct: 350 WAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCME 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L PY VD++ KLIP D Sbjct: 410 RRDRVIDYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+A+ R + V L+++++KLEGL R+A HA G+VI + L++ VP Sbjct: 470 TLD-KALAESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPY 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600 Y + + VTQF+ IE GL+KFDFLGL+TLT+L +L + ++ + DL+L Sbjct: 529 YCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALLDLAL 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 +P DD ++Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + + Sbjct: 589 LPMDDPKSYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMV 648 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRRAMG Sbjct: 649 DDYINRKHGRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM +Q+ F +GA + + A IF+L+ KFA+YGFNKSH+AAYAVI+YQTA+ Sbjct: 709 KKKPEEMAEQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 +K HYP ++AA ++ +MDN EK+K F ++ N+ ++PP VN F G+ I Y Sbjct: 769 LKAHYPASYMAAVLSADMDNTEKVKAFVEECWAMNLDLLPPDVNASNYSFSAQGETAIRY 828 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG I++ P+ L +FC R+D +K++RRVLE+L+ AGALD G Sbjct: 829 GLGAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALDSLGV 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955 R L SL+ A+ +N + ++F + + + + + R E Sbjct: 889 ERATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQRLALE 948 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTR 1010 + LG Y SGHP+D YK L+++ E + I +A +V S + K R Sbjct: 949 KETLGLYLSGHPIDCYKQELKQIAPCRIVELIDRANNRQSRNQQIVIAGLVGSVRTNKAR 1008 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G R +VT + + E F Sbjct: 1009 QGGRNAFVTLEDGSARLEIKAF 1030 >gi|152967131|ref|YP_001362915.1| DNA polymerase III subunit alpha [Kineococcus radiotolerans SRS30216] gi|151361648|gb|ABS04651.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans SRS30216] Length = 1180 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 367/1069 (34%), Positives = 564/1069 (52%), Gaps = 51/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SF HL VH+ YS+L+GA ++++ A PA+A TD +F A +F + A Sbjct: 1 MASADSFAHLHVHTEYSMLDGAAKVDDLFRTAAEMGMPAVATTDHGFVFGAYDFWKTAKK 60 Query: 65 AGIQPIIGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 G++PIIG + + D + + + + +L G L Sbjct: 61 HGVKPIIGVEAYLTPGTARQDKTRVKWGDPNGRSGDDVSGAGSYTHMTMLAQNTAGMHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ S L + R+ L + + GLI TG SG + A K Sbjct: 121 FKMSSLASL-EGFLYKPRMDRELLSQY-SAGLIATTGCPSGEVQTRLRLGQYDEARKAAA 178 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG + + L H +R + +++LA +LPL+ATN+ + D +AH Sbjct: 179 DYRDIFGAENFFCELMDHGLDIERRVQDDLLKLAKDLDLPLLATNDLHYTHAGDSQAHAA 238 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V + ++ R + + YLK+ +EM ++ D PEA +NT+ IA RC Sbjct: 239 LLCVQSGSTLADPKRFKFDADEFYLKSPAEMRHVWRDHPEACDNTLLIAERCEVEFTEST 298 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++ + ++EE+ + +GL R G D R++ D+E+ VI Sbjct: 299 GA---YMPRFPCPEGEDEESWFVKEVWSGLAQRYPAG------IPDDVRKQADYEIEVIT 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPLR L FERFLN Sbjct: 350 SKGYAGYFLVVADFINWSKENGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLFFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+RMSMPDFD+DF + RR EVI+YV KYG +RVAQI+T+G+++AK A++D R L P+ Sbjct: 410 PERMSMPDFDVDFDERRRGEVIQYVVEKYGTDRVAQIVTYGTIKAKQAVKDSSRVLGFPF 469 Query: 470 SQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520 S DR+ K + P + + ++ FRE +DP V ++++ ++ LEG Sbjct: 470 SMGDRITKTMPPAVMGKDIPLSGIFDPNHKRYSEAGEFRELYKSDPEVVKVVDTARGLEG 529 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ PL L+P+ + +TQF+ E GL+K DFLGL+ LT Sbjct: 530 LKRQWGVHAAGVIMSSDPLIDLIPIMKREADGAIITQFDYPTCETLGLVKMDFLGLRNLT 589 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L +L + VDL + DD T+ LL TLG+FQ + MR L M+PD Sbjct: 590 ILDDALKNVVANGKEAVDLDALELDDQATFDLLGRGDTLGVFQFDGGPMRSLLRLMRPDN 649 Query: 640 IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693 EDI A+ +LYRPGP+ + Y RKNG+E I IHP ++ LK T G+I+YQE Sbjct: 650 FEDISAVGALYRPGPMGAGSHTAYARRKNGQEPITPIHPELEEPLKEILGTTYGLIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM IAQ ++GYSL AD+LRRAMGKK +E +D + F G NG SK ++++L Sbjct: 710 QVMSIAQKVAGYSLGSADLLRRAMGKKKREVLDAEYVGFEKGMLDNGFSKECVKALWDIL 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 770 VPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKSALYLNECRRMG 829 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 IQ++PP VN +F I + L AI+ VG ++EA A+ ++S DF ++V Sbjct: 830 IQVLPPDVNESSANFTAVGADIRFGLTAIRNVGANVVDAVVEARAEKGRYESFTDFLTKV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + N+R +ESL+ AGA D G+ R L+ ++ V++N ++FA G Sbjct: 890 PAVVCNKRTIESLIKAGAFDSLGHRRRALVAKHEDAVDAVVDVKRNEAIGQFDLFAGLGG 949 Query: 933 TFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + + + +E+++LG Y S HPL + +L + Sbjct: 950 DDDGGAGGFHVEIPDLPEWEKAELLAHERQMLGLYVSDHPLFGLERLLANASDVPIATLL 1009 Query: 988 A---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+NI +A M+ Q+K T++G+ VT + A E FFP Sbjct: 1010 EDESRPDGSNITIAGMITGLQRKTTKQGNYWAIVTVEDLAGAIECLFFP 1058 >gi|317121217|ref|YP_004101220.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter marianensis DSM 12885] gi|315591197|gb|ADU50493.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter marianensis DSM 12885] Length = 1245 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 377/950 (39%), Positives = 559/950 (58%), Gaps = 50/950 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + + + A PA+A+TD ++ A++F + GI+PI Sbjct: 4 FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+L + + + ++ L GY+ LI++VSR Y + R Sbjct: 64 IGCELYLARRTRHDREPK---VDDQSYHLLALAQNETGYRNLIKIVSRAY-AEGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L E +EGLI+ +G I R + A K + + ++FGDR Y +Q H Sbjct: 120 ADKELLAE-HSEGLIVTSGCIGSEIPRLLLEGREEEALKAVRWYLEVFGDRFYFEIQDHG 178 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + R +++++LA ++P+VATN+ +L ++D AH+VL+ + + R R Sbjct: 179 IPEERRAYARILELARRFDVPVVATNDVHYLHKDDAAAHEVLLCIQTGKTLDDPHRMRFD 238 Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK+ EM ++F D+PEAL NTV++A RC + +LP + E D Sbjct: 239 GAEFYLKSPEEMAALFRDVPEALANTVQLAERCQLEFEFGRFLLPHYEVPEGHD----AA 294 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR L R + RL+ EL VI RM + YFLIV DF+ +A+ Sbjct: 295 SYLRYLCETKLPERYPDAGS-------EVWDRLNHELAVITRMGYPAYFLIVWDFVDYAR 347 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF RRD Sbjct: 348 RNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRRD 407 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P + Sbjct: 408 EVIDYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITLD 467 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QA+ ++A P V +L+++++KLEG+ RHAS HAAG+VIG PL + VP+ R Sbjct: 468 -QALEASPELKQAYEQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR- 525 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---------- 598 ++ VTQF M +E+ GL+K DFLGL+TL ++Q++ + G + L Sbjct: 526 MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEAIINTTGARDVLAGESGGGGAE 585 Query: 599 ----------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 IP DD T+ ++ T +FQ+ESSG Q L ++P IED+IA V+ Sbjct: 586 EPGAAPRFRVRDIPLDDPATFEAMSRGDTAAMFQVESSGFTQMLRSLRPSSIEDLIAAVA 645 Query: 649 LYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 L+RPGP+ + + + RK+G+ + HP ++P+LKET G I+YQEQVMQIA +++G++ Sbjct: 646 LFRPGPLGSGMVDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFT 705 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L EAD+LRRAMGKK EEM KQ+E+F++GA G+ + +A +IF+L+ FA YGFNKSH+ Sbjct: 706 LGEADLLRRAMGKKKPEEMQKQREKFLAGAEAKGVDRKLAEHIFDLMEYFAGYGFNKSHS 765 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY ++Y TA++KTHYP ++AA+++ M N +++ ++ + R+ I ++PP +N Sbjct: 766 AAYGYLAYVTAYLKTHYPAPYMAATLSSVMSNSDRVAEYIGECRRLGIPVLPPDINESQA 825 Query: 827 DFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878 F V G I + LAA+K VG I+ A PF SL+DFC RVD +++N Sbjct: 826 LFTVVPDPRAPGGQAIRFGLAAVKNVGFGAIESIVSAREQGGPFRSLDDFCRRVDLRQVN 885 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RR LESL+ AGA D G+ R +LL L+ + + AQ +K R ++ Sbjct: 886 RRALESLIKAGAFDSLGHPRARLLAGLEEVMERAQRWQKERETGQVSLLD 935 Score = 141 bits (355), Expect = 7e-31, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%) Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + L + + E+ VLG Y SGHPL Y+ L + + G Sbjct: 1025 DEATELPPVEEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLAEREDGAR 1084 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ +V ++ TR G + +V + E FP Sbjct: 1085 VQVGGLVQGVRRITTRSGELMAFVQLEDLEGSVEVVVFP 1123 >gi|268610019|ref|ZP_06143746.1| DNA polymerase III DnaE [Ruminococcus flavefaciens FD-1] Length = 1135 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 368/1034 (35%), Positives = 592/1034 (57%), Gaps = 28/1034 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S FVHL +H+ YSLL+GA L +++ I + Q A+AITD N++ A+EF +A AG Sbjct: 2 NSSDFVHLHLHTEYSLLDGACRLKPLMEHIKSLGQTAVAITDHGNMYGAVEFWNEAKNAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PIIGC++ + + + + + ++LL EGY+ L++LVS + + Sbjct: 62 IKPIIGCEVYVARRTRHDRDPKLDS---SPYHLILLCKNNEGYKNLVKLVSIASI-EGFY 117 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185 R+ L L++ +GLI L+ +G I R ++ + A+ +T+ +FG+ ++ Sbjct: 118 NKPRVDLELLKKYH-DGLICLSACLAGEIPRLLNNSTYEEAKAVAMTYLDIFGEGNYFIE 176 Query: 186 LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H +R + +L+ +PL ATN+ ++S++D E +VL+ + ++ + + Sbjct: 177 IQDHGIAAERKILPHLYRLSEETGIPLAATNDCHYISKDDAEMQNVLICIQTGKILGEPN 236 Query: 245 -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 T + Y+K+ EM +F+ EAL+NT IA C+ + LP+F + D Sbjct: 237 GMSFETDEFYVKSTEEMAELFAGHEEALKNTARIAEMCNVEFEFGNIKLPKFTVEGVTDN 296 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E R+ G+ R + + +RL++EL+VI RM ++ YFLIV DF Sbjct: 297 ----EAYFRDLCRKGMYERYGRSPDS------KVEERLEYELSVITRMGYTDYFLIVWDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ +N+PVGPGRGSGAGS+ AY + IT IDP++F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRYARDHNVPVGPGRGSGAGSLCAYCIGITGIDPMKFNLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + R V YV KYG + V++II F +L+A+AA+RD GR + +PY+ D++ K I Sbjct: 407 IEGRQSVKDYVVRKYGKDYVSEIIAFDTLKARAAVRDTGRVMSLPYALCDKVAKQIDM-- 464 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 A+ + + +D SV +L++ ++KLEG+ RHASTHAAG+VI PLS LV Sbjct: 465 -RNTLDDALKESEELAQLYKSDRSVKKLIDTAKKLEGMPRHASTHAAGVVISAVPLSDLV 523 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ ++ D VTQ+ M +E GL+K DFLGL+ LT+++ +++ + + D+ I F Sbjct: 524 PLQKN--DDTVVTQYTMTVLESLGLLKMDFLGLRNLTIIRDAVNEIRRSEPDFDIDKIDF 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 D Y +L+ T G+FQ ES+GM L + P+ +ED+I ++SLYRPGP+ +I VY Sbjct: 582 ADQNVYKMLSDGDTCGVFQFESAGMTARLMELCPERLEDLIVILSLYRPGPMKSIPVYIE 641 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 K + I HP++ +L +T G ++YQEQVM+I + ++GYS AD++RRAM KK + Sbjct: 642 NKKHPDSIKYKHPILKDILADTYGCMVYQEQVMEICRKMAGYSYGHADIVRRAMAKKKHD 701 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M K++E+F+SG+ +NG+S+T+A +F+ + FA Y FNKSHAAAYA ++YQTA++K HY Sbjct: 702 VMLKEREKFVSGSVENGVSETVANEVFDEMVSFASYAFNKSHAAAYAYLAYQTAYLKYHY 761 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 ++AA M+ M + +K+ ++ R I++ P VN F D +Y+ L AIK Sbjct: 762 RGIYMAALMSSVMGSSDKLAEYINSCRDNGIKVCCPDVNKSFRGFTFKDGVMYFGLLAIK 821 Query: 844 GVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 G+ A I++ F L+DFC R++ ++LN++ LE+++ AGA D G +R Q+L Sbjct: 822 NAGSGLADKLILDRQQHGDFKGLQDFCERIEGRELNKKALENMIKAGAFDGLGLNRRQML 881 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 S + + A ++ + +F +E+ + + F E+ G Y Sbjct: 882 DSYETFIEMAGEGKRGVIDGQLGLFRNEESHEMG-VKISYKPEFEKKRLFAMEKEATGMY 940 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 SG PLD YK I M + + G N++L V S + T++G ++ + Sbjct: 941 LSGDPLDSYKWISDLMHTDTVSGLSSPDTAVDGKNVKLLCTVESTKVHITKRGDKMCFAE 1000 Query: 1020 FSEPAKEYEANFFP 1033 S+ E FP Sbjct: 1001 VSDGTGVMECVVFP 1014 >gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1144 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 409/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K A+ PA+AITD NL ++F AGI+PI+G ++ + Sbjct: 1 MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + +L S GYQ L L+S+ Y G + WL E+ Sbjct: 60 ---------LLGDELTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R + + E+ + ++ F DR ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ FL +D++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALENTVEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFADIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ + Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + + + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQMVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|189502058|ref|YP_001957775.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus 5a2] gi|189497499|gb|ACE06046.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus 5a2] Length = 1148 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 369/1037 (35%), Positives = 577/1037 (55%), Gaps = 35/1037 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+G ++ + K A+AITD N+F F +A GI+PI Sbjct: 4 FTHLHCHTQYSLLDGTAKIDKLFGKAKQLGMQALAITDHGNMFGVPHFVAQAKKQGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + T +LL GY+ +++L S +L + R Sbjct: 64 IGCEFYLAADMHNLKEK-------TRYHQLLLAKNEVGYKNIVKLCSISFL-EGYYYKPR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGLI T +G + +A + AEK L++ +FG+ Y+ LQRH Sbjct: 116 IDKELLKKY-SEGLIATTCCLAGEVPQAIMRKGEEEAEKVFLSWLNIFGEDYYIELQRHG 174 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ + +++ A +++ ++ATN+ ++ ++D A D+L+ + + +R R Sbjct: 175 LKEQDKCNEVLLKWAQKYQVKVIATNDVHYVEQQDSLAQDILLCLQTGKDYNDPNRMRFD 234 Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +LK+ EM+++F D+P+A+ NT EI + + +LP F + Q + Sbjct: 235 GDQFFLKSPQEMLTLFHDIPQAVSNTQEIIDKINTPSLERDILLPVFQIPQGFTSQ---D 291 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR+ A+ G + G + D R+++EL VI +M F GYFLIV DFIQ AK Sbjct: 292 SYLRHLAIEGAKK-------RFGAISADLEARINYELGVIQQMGFPGYFLIVQDFIQAAK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + VGPGRGS AGSV AY + ITDIDP+R++L FERFLNP+R+SMPD DIDF + R Sbjct: 345 NLQVVVGPGRGSVAGSVVAYCIGITDIDPIRYNLFFERFLNPERVSMPDIDIDFDDEGRQ 404 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +VI YV +KYG +VA IITFGS+ AK+A+RDV R L +P + + + KL+P + Sbjct: 405 KVIEYVVDKYGKNQVAHIITFGSMAAKSAIRDVARVLGLPLERTNYIAKLVPEKLGITLP 464 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ ++L +++ LEG RH HAAGI+I L +P+ D Sbjct: 465 ESFEEVLELAELKKNSNTLEGKVLSLAETLEGSARHTGVHAAGIIIAPDDLLNHIPVKTD 524 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 SDL VTQ++ +EK G++K DFLGLKTL++++ ++ + + G K+DL +P DD + Sbjct: 525 KNSDLLVTQYDGSIVEKVGMLKMDFLGLKTLSIIKDAIALIEKLHGTKIDLEQLPLDDLK 584 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ L T+ FQ ES GMRQ L+ +QP E++IA+ +LYRPGP+ I + RK+G Sbjct: 585 TFKLYQQGDTIATFQFESEGMRQWLKKLQPTEFEELIAMNALYRPGPMQFIPNFIARKHG 644 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +EKI HPL+ +LK T G+++YQEQVMQ AQ+++GYSL AD+LR+AMGKK EEM K Sbjct: 645 QEKIDYPHPLLVDILKNTYGIMVYQEQVMQTAQIIAGYSLGGADLLRKAMGKKQPEEMAK 704 Query: 728 QKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+E F+ GA + T A+ IFE++ KFA YGFN++H+AAY+VI+YQTA++K HYP E Sbjct: 705 QREIFVQGAQEKNNLPSTKAIEIFEVMEKFAQYGFNRAHSAAYSVIAYQTAYLKAHYPAE 764 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGV 845 ++A+ +T +++ KI F ++ + IQ++ P VN V+F V I + L AIKG Sbjct: 765 YMASVLTHNQNDIGKISFFMEECIRQGIQVLGPDVNESQVNFDVTPKQGIRFGLTAIKGA 824 Query: 846 GTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903 G HI+ + F + F RVD + +N++ LESL +GA D F G R Q L Sbjct: 825 GEGAVSHIIAEREKNGHFTDIFSFVERVDLRMVNKKTLESLAMSGAFDGFTGCHRRQYLF 884 Query: 904 SLD-------NIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENE 955 + D +Y +++ + + +++FA + + K + + + E Sbjct: 885 AADGEHNLLVKAIQYGNQIKQEKASAQQSLFAMDDNFQYIQKPPIPTCEPYDKIEKLRME 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + ++GFY SGHPLD ++ L + + + +RLA ++ K ++G Sbjct: 945 KELVGFYISGHPLDQFRVELANFCDGHTQNILTFKQ-KEVRLAGIITECSIKYNKQGRPF 1003 Query: 1016 GWVTFSEPAKEYEANFF 1032 G + + F Sbjct: 1004 GLFILEDYHGTLDLALF 1020 >gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116] Length = 1143 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 409/1031 (39%), Positives = 600/1031 (58%), Gaps = 37/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+A PA+A+TD NL +++ A +G++PIIG + Sbjct: 1 MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGADFKM---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + LL + EGY+ L L+S+ YL + + +WL E+ + Sbjct: 57 ------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWLAEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+G +G I +A + +V + + + + F DR Y+ L R D Sbjct: 110 EGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA ELP+VATN +F+SE+ ++AH++ +A+ + RP+ +P+ YL+ E Sbjct: 170 IELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ EE + L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETDFLVMKSREGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y RL EL+VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L P+ VDR+ KL+P DP + + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKA-FKAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E AD V L+++ + LEG R+A HA G+VI ++ P+Y D PVT Sbjct: 464 ALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R V + IP DD ++ L Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 I H + +L T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA NG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + + ++PP +N F V + I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F L DFC+R+D KK+N+RV+E L++AGALD G R L+ Sbjct: 824 GVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A + ++F + + + V E E+ LG Sbjct: 884 ASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHP++ Y L K +++ T R ++ +A +V++ + T++G+RIG +T Sbjct: 944 YLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLD 1003 Query: 1022 EPAKEYEANFF 1032 + + E F Sbjct: 1004 DRSGRMEVMLF 1014 >gi|307822683|ref|ZP_07652914.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96] gi|307736287|gb|EFO07133.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96] Length = 1164 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 417/1042 (40%), Positives = 617/1042 (59%), Gaps = 30/1042 (2%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+FVHL++H+ +SL++G + + ++ ++A PAIA+T+ NLFS ++F + A GI+ Sbjct: 3 PAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I G + + ++ T + LLV+ GY L EL+S+ Y Q + Sbjct: 63 AIAGSDVLVFNPEDP----------ATPYRLTLLVNNHAGYITLTELISKAYQEGQHQGV 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + W++ GLI L+G SG I +A + A++ + LF Y+ LQR Sbjct: 113 PMLRQEWIEANHN-GLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQR 171 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + R + V+LA LP+VATN+ F+ ++D+ AH+V + + S V+ RP+ Sbjct: 172 VGKPEEERYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRPK 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YL++ EM ++F+D+PEALENTVEIA+RC+ L + LP F E ++ + Sbjct: 232 DYTDQQYLRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLGEF 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E L+ A G + + Y RLDFEL +I +M F GYF+IVADFIQW Sbjct: 292 MAEESMKGLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVADFIQW 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DFC DR Sbjct: 352 AKNNLIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMDR 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV YG + VAQIIT+GS+ AKA +RDVGR L Y VDRL KL+P + Sbjct: 412 RDEVIDYVARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPFEIGMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++ +A+ D ++ + V L++++ LEG R+A HA G+VI L+ P+Y Sbjct: 472 LT-KALKDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTDFTPLY 530 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLI 601 D + VTQF+ +E GL+KFDFLGL+TLT++ +L + + + VD+++I Sbjct: 531 CDQDGNNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQDINAKHKQLGKPLVDITII 590 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD ++Y LLT T +FQLES GM++ ++ ++PDC +DIIALV+L+RPGP+++ +V Sbjct: 591 PRDDPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVD 650 Query: 662 NNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K HPL++P+LK T GVI+YQEQVMQIA+ ++ Y+L AD+LRRAMGKK Sbjct: 651 DYINVKHGAKAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLRRAMGKK 710 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 EEM K++++F +GA +N + + IA +F+L+ KFA YGFNKSH+AAYA+++YQTAW+K Sbjct: 711 KPEEMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLK 770 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839 HY EF+AA M+ +MDN +K+ ++ +Q +++ PP++N F V D I Y L Sbjct: 771 AHYQPEFMAAVMSADMDNTDKVVILIEECKQMKLEVCPPTINVSKYKFTVNDAGHIVYGL 830 Query: 840 AAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 A+KGVG ++E A+ F L D C RVD +K NRRVLE+L+ AGA D F +R Sbjct: 831 GALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFDEFDDNR 890 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEK--FSVENSSVRFENE 955 L L + K A+ KN ++F +D + + + R E Sbjct: 891 AGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEPWSENERLAAE 950 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-----NIRLAAMVVSKQQKKTR 1010 + VLG + +GHP++ Y+ LR+ E +A + + R A +VV + ++T+ Sbjct: 951 KLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEVRTRQTK 1010 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G +G+ T + E F Sbjct: 1011 NGKVMGFATIDDRTGRLEIAAF 1032 >gi|284030835|ref|YP_003380766.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836] gi|283810128|gb|ADB31967.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836] Length = 1182 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 352/1071 (32%), Positives = 551/1071 (51%), Gaps = 54/1071 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL VH+ YS+L+GA ++ + PAIA TD +F A EF + A Sbjct: 1 MASSDSFVHLHVHTEYSMLDGAARIDELFKTAQEMGMPAIATTDHGYVFGAYEFWKTAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ-----------GKTPFPTVPSIVLLVSTAEGYQRLI 113 ++PIIG + + + + + + LL G L Sbjct: 61 YDVKPIIGVEAYLTPHTHRSERKRVKWGDANSGRDDVSGSGAYTHMTLLAKNTSGMHNLF 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 ++ S L + R+ LQ G +GLI TG SG + + A + Sbjct: 121 KMSSLASL-EGYYFKPRMDRELLQTYG-QGLIATTGCPSGEVQTRLRLGQYKEAVEAAAE 178 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 F+ +FG + Y L H G +R + +++LA LPLVATN+ + ED AH L Sbjct: 179 FRDIFGAENYYCELMDHGLGIERNVQQDLLKLARELGLPLVATNDLHYTKPEDATAHAAL 238 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + V + +S +R + + Y+K +EM ++ DLPEA +NT+ IA +C Sbjct: 239 LCVQSGSTLSDPNRFKFDANEFYVKTAAEMREVWKDLPEACDNTLLIAEQCDVSFTEGE- 297 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 RF+ + EE+ + GL R G R++ ++E+ VI Sbjct: 298 --GRFMPRFPCPEGHNEESWFVAEVETGLHRRYPDGV------PDHVRKQAEYEIEVITS 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 ++GYFL+VADFI WAK++ I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNP Sbjct: 350 KGYAGYFLVVADFINWAKEHGIRVGPGRGSGAGSMCAYAMRITDLDPLQHGLIFERFLNP 409 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +RMSMPDFDIDF RR EVIRYV KYG +RVA I+T+G+++AK A++D GR L P++ Sbjct: 410 ERMSMPDFDIDFDDRRRPEVIRYVTEKYGDDRVAMIVTYGTIKAKQAIKDAGRVLDYPFA 469 Query: 471 QVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K +P V + ++ FR+ +D V ++++ ++ LE L Sbjct: 470 MGDRITKAMPPAVMGKDVPLSGIFDPQHKRYSEAGEFRQLYESDADVRKIVDTARGLENL 529 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ PL +L+P+ R + +TQF+ E GL+K DFLGL+ LT+ Sbjct: 530 KRQWGVHAAGVIMSSEPLIELIPIMRREQDGQVITQFDYPSCETLGLVKMDFLGLRNLTI 589 Query: 582 LQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 + ++ + DD T+ LL TLG+FQ + MR L M+PD Sbjct: 590 MDDAVKNVEASRGITLDLDELAKTLDDKATFELLGRGDTLGVFQFDGGPMRALLRLMKPD 649 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692 EDI A+ +LYRPGP+ ++ Y RKN +++I H ++P+L T G+I+YQ Sbjct: 650 NFEDISAVGALYRPGPMGANSHTNYALRKNKQQEISYPHDELAVALEPILGTTYGLIVYQ 709 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ L+GY+L +AD+LRRAMGKK +E +D + F G G S ++++ Sbjct: 710 EQVMAIAQQLAGYTLGKADLLRRAMGKKKREVLDAEYVGFSEGMKAGGFSDASIKALWDV 769 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K+ + + R+ Sbjct: 770 LVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVKDDKDKMAIYLNECRRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN +F I + L+AI+ VG I+ A + F DF + Sbjct: 830 GIKVLPPDVNESDSNFTPVGTDIRFGLSAIRNVGVNVVAEIVAAREEKGRFTDFVDFIDK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V N+RV+ESL AG+ D ++R ++ + A +++N + ++F+ Sbjct: 890 VPLPVCNKRVIESLAKAGSFDSMNHARRAVVAVHEQAVDEAIDLKRNEAHGQFDLFSMGD 949 Query: 932 GTFSD-------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 D +T+ + + + + +E+ +LG Y S HPL + +L Sbjct: 950 DDAEDGEGNRRLTVTVPEIEEWDKATKLAHERDMLGLYVSDHPLFGVEHVLTNGTDCTIG 1009 Query: 985 ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + G+ + + +V + Q+K ++G VT + E F Sbjct: 1010 QLLADEDRPDGSQVTIGGLVTAVQRKVNKRGDIYAIVTIEDLEGSIEVMMF 1060 >gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] Length = 1179 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 609/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ +EGL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 LS +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825 Query: 833 NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + +F + L + Sbjct: 886 GAFDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|123966261|ref|YP_001011342.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT 9515] gi|123200627|gb|ABM72235.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT 9515] Length = 1165 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 379/1043 (36%), Positives = 592/1043 (56%), Gaps = 28/1043 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA ++ I+D+ + +IA+TD ++ L+ +K GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQVSKIVDRASELGMESIALTDHGVMYGVLDLVKKCKDKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ I + +V+L EGY+ L++L + +L + Sbjct: 63 IGNEMYIINGSIDDPQPK----KEKRYHLVVLAKNHEGYKNLVKLTTISHLNGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I S L++ +GLI+ T G I +A VAE +K L G+ Y+ + Sbjct: 119 SRPCIDKSLLEKY-KDGLIISTACLGGEIPQAILKGRIDVAENIACWYKNLLGEDFYLEI 177 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR +++++ +++ ++ATN++ ++S D EAHD L+ V ++S + R Sbjct: 178 QDHGSMEDRIVNVEMIRIGKKYQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T Y+K+ EM+ +F+D E+++ + S ++V + K Sbjct: 238 LRYTGTEYIKSEIEMLRLFNDHIDNESIKEAINNTVEVSQKIEVFDLFGTYRMPKFPLKE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 +K+ + L + GL RL + + + Y +RL EL +I M F YFL+V D+ Sbjct: 298 EKDSLSFLTKISKEGLLKRLNKANLD--EVDEIYTKRLSSELKIINDMGFPDYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A+ N+IPVGPGRGS AGS+ A++L IT+IDP++ LLFERFLNP R SMPD D DFC Sbjct: 356 IKFARDNSIPVGPGRGSAAGSLVAFSLQITNIDPVKHGLLFERFLNPARKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR EVI YV N+YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IDRRSEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKLIPVVR 475 Query: 484 AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L + D FR+ L D V R ++++ ++EG + HAAG+VI L Sbjct: 476 GKPYKLNEMIDKKSPSPEFRDKYLKDSKVKRWVDLALRIEGTNKTYGVHAAGVVIASESL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598 LVP+ R+ +TQ++M IE GL+K DFLGLK LT++ K++ + G K+++ Sbjct: 536 DMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTGQKINV 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 +P +D++T+ L+ GIFQLESSGM+Q ++ +P+ +EDI ++++LYRPGP+D Sbjct: 595 DELPPNDNKTFDLIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRKNG EKI HPLI +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKNGSEKIDFPHPLIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + FI GA K G+ K IA ++F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMVKHRNIFIEGACKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYPV ++A+ +++ + +K++++ + I+++ PS+N+ +DF V ++I Sbjct: 775 AFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINSSGIDFTVKKDQIL 834 Query: 837 YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894 + L+AIK +G + ++I+E F S D C R+ S LN+R LESL+ GALD F Sbjct: 835 FGLSAIKNLGDSAIKNIIENRNKLGNFKSFSDLCDRLPSNILNKRNLESLIHCGALDEFS 894 Query: 895 -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE---KFSVENSSV 950 +R QL LD + ++A ++R + N+F + +L K + Sbjct: 895 ENKNRAQLFSDLDYVMEWASSRNRDRISGQGNLFDSISNIEHKEFSLPKGSKVDDYSLIE 954 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + + E+++LGFY S HPL + + + + + L M+ +Q TR Sbjct: 955 KLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELKQITTR 1014 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG R+ V + + EA FP Sbjct: 1015 KGDRMAIVQLEDLSGTCEAIVFP 1037 >gi|224418173|ref|ZP_03656179.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253827500|ref|ZP_04870385.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT 98-5491] gi|313141708|ref|ZP_07803901.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253510906|gb|EES89565.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT 98-5491] gi|313130739|gb|EFR48356.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT 98-5491] Length = 1171 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 374/1060 (35%), Positives = 590/1060 (55%), Gaps = 44/1060 (4%) Query: 5 LEKSP--------SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56 + K+P SF HL +H+ YSLL+G + + +I ++AITD N+F A+ Sbjct: 1 MSKTPNEIITPQISFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAI 60 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 EF + GI+PI+G + + + + + + + L EGY+ L+ L Sbjct: 61 EFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLS 114 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAE 168 S+ L RI L+E + GLI + +G + + A+ Sbjct: 115 SQACLYG-YYMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAK 172 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + L ++ +FG+ Y+ L RH ++ ++Q++Q++ + ++ATN++ + + D A Sbjct: 173 EVALEYQDIFGEDFYLELMRHGIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTA 232 Query: 228 HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 +V + + +R R T + Y+K+ EM +++D PEAL NT EIA +C+ L Sbjct: 233 QEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELH 292 Query: 287 VHAPILPRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 + P P F + + K GL+ RL Q+Y +RL Sbjct: 293 LGDPTPPSFKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLLNIP---QEKHQEYTERL 349 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E+ +I +MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDP+++ Sbjct: 350 EREIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYD 409 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV KYG VAQ+ITFG ++AKA +RDV Sbjct: 410 LLFERFLNPERVSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRDV 469 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R + MPY + D KLIP D + + + +E +P ++ + + LE Sbjct: 470 ARVMGMPYGEADSFAKLIPKDLDITLEKA-YEKEPKIKELIEKNPLAKKIWDFAVILENT 528 Query: 522 YRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+ THAA +VI + L P+YR R + TQ++MK++E LIKFDFLGLKTLT Sbjct: 529 KRNPGTHAAAVVIDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTLT 588 Query: 581 LLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L+ +L + R ++D + DD + Y L + TLGIFQ+ESS + + ++P Sbjct: 589 LIDDALKLIKNRHHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPST 648 Query: 640 IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++L RPGP+++ + + +RK+GK IV + P ++P+LK T G I+YQEQVMQ Sbjct: 649 FEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVMQ 708 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q + G+SL EAD++RRAMGKK + M K +F GA G K A ++EL+ KFA Sbjct: 709 IVQRIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKFA 768 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+++++TA++KT+YP EF+AA +T E + EKI ++ ++A + +I+++ Sbjct: 769 GYGFNKSHSAAYAMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKVL 828 Query: 818 PPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 PP++ ++F V G++ I + L AIKG G I+E + F LEDF +R+ Sbjct: 829 PPNLQKSELEFSVAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLARI 888 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +K+N++ LES + +GA+DCF Y+R LL+ ++ + + A+ + R ++F + Sbjct: 889 DPQKVNKKSLESFIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSEE 948 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 S + LE + E E+ LGFY SGHPL+ YK I++ + + Sbjct: 949 FTSVALELENKGEFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCVYTNQIQDIAEN 1008 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++I L + K ++ G R G + + E F Sbjct: 1009 SHILLIGSIEDVITKFSKTGKRYGILKLQDLYGSIELTIF 1048 >gi|256544919|ref|ZP_05472290.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399418|gb|EEU13024.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 1149 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 361/1057 (34%), Positives = 567/1057 (53%), Gaps = 49/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F HL +H+ YSLL+G ++ +++K+ + AITD N++ +EF +K A Sbjct: 1 MTNN--FTHLHLHTEYSLLDGFTKIDKLMEKLKEFGMDSCAITDHGNMYGVIEFYKKCQA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+PIIGC++ I D T Q K ++LL GY+ L+++VS+ Y Sbjct: 59 NNIKPIIGCEVYICENDYKIKTPQNK----RYYHLILLAKNNNGYKNLLKIVSKAYTQ-G 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L+E E LI L+ +G I++ N + A + LFG + Y Sbjct: 114 YYYKPRIDFEVLKEY-KEDLIGLSACLNGEINQRILENDIKKAYSTAKKYLDLFGKENFY 172 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ ++++ ++ LV TN+ ++ + D DVL + +++ Sbjct: 173 LEVQYHGLKEQKKVNEVLLRIHKDLDIELVCTNDVHYVEKNDAFYQDVLSCIQTGSLLED 232 Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R ++ + YLK+ M IF + P A ENT +I+ C+ L+ H P LP F + D Sbjct: 233 ENRMKMPVDEFYLKDSQMMEEIFKEFPRAFENTQKISAMCNVSLEFHNPHLPYFTKLPKD 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 L+ GL + + +R E++VI M + YFLIV Sbjct: 293 TTNL---EYLKILVKEGLIKKYKN-------LDEKIIKRAKKEIDVINNMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++AK N I VGPGRGS AGS+ +YAL IT IDPL++ LLFERFLNP+R+SMPD DID Sbjct: 343 DFVKYAKDNKIAVGPGRGSAAGSIVSYALDITQIDPLKYDLLFERFLNPERVSMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD+V+ YV YG + V+QI+TFG +QA+ A+RDVGR + + Y++VD++ KLIP Sbjct: 403 FCYENRDKVVEYVYELYGRDHVSQIVTFGRMQARNAIRDVGRVMNISYNKVDKIAKLIPQ 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + D R+++ ++ +E L RH S HAAG+VI L+ Sbjct: 463 AIGMTID-KALDSTEKLAYEYQNDVETKRMIDTARNIEALPRHTSIHAAGVVISKEILTD 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600 +VP+ +D VTQFNM IE+ GL+K DFLGL+ LT++Q ++ D + +++DL Sbjct: 522 IVPLALS--NDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDIKKNKNIEIDLGA 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D + T T+GIFQ ES+GMR L+ ++P +D++A SL+RPGP+D I Sbjct: 580 IDENDPKVISQFTKAETVGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K + I I + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK Sbjct: 640 YIKNKINPQNISYIDDALKPILEVTYGIIVYQEQVMQIVQKLAGFSLGEADNLRRAMSKK 699 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M+ +E F+ G NGIS+ A I++ + FA Y FNKSH+AA Sbjct: 700 KMSVMEANREIFVHGKKNQNGEYEVIGCVNNGISEINANKIYDEMISFAKYAFNKSHSAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++ QTA++K ++ E++A +T M N K+ + +A++ I+I+PP++N F Sbjct: 760 YSLVAIQTAFLKYYFKEEYMANLLTSIMGNSSKVYLYISEAKRLGIKIVPPNINKSKRRF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885 +N I + L+AIK VG I+ +K F S +DF R+ D LN++ LESL Sbjct: 820 IASENEIVFGLSAIKNVGENLIDLIVNLRKEKNFKSFKDFLERIEANDPTVLNKKALESL 879 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943 + AG DC GY R +L+ + + EK N+ F K D I Sbjct: 880 IKAGVFDCMGYKRSELMAVHETALQSIHDNEKVNLKGQMNLLDFDQNKEEIIDDIKFPPV 939 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIR 996 + + + + E+ VLGFY S HPL+ L+ E ++R Sbjct: 940 NEYKNKQKLKLEKEVLGFYISDHPLNSLGNNLKNYVNFTTEILSELRPVDLDKFDNKSVR 999 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A ++ +K + T+K + + + + + + + FP Sbjct: 1000 MAGIITNKSETMTKKSTLMAFCSLEDMSGSIDMIIFP 1036 >gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris] gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris] Length = 1148 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 426/1039 (41%), Positives = 625/1039 (60%), Gaps = 35/1039 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VH+ +SL++G + + ++ + A +A+TD NLF+A++ + A AGI+P Sbjct: 4 RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L + S+VLL GY+ L LVS+ Y Q Sbjct: 64 IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L W+ E ++GLI L+GG G I +A N +A KR L + LF +R Y+ +QR Sbjct: 114 RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 D + ++V LA +LPLVATN+ F++E+D++AH+ + + ++ R + Sbjct: 173 GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YL++ EM +FSDLP AL+NTVEI++RC+ L++ LP F + Sbjct: 233 YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L + + GLE RL Q K +Y +RL EL+VI M F+GYFLIVAD Sbjct: 289 EAYLSHLSEIGLEERLKQLFRDKSEGELLVARGEYDKRLKIELDVINNMGFAGYFLIVAD 348 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 349 FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI YV KYG + V+QIITFG++ AKA +RDVGR L PY VD+L KLIP + Sbjct: 409 CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S +A+ + R + V L +++ KLEG+ R+A HA G+VI L+ Sbjct: 469 LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAPSQLTDF 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597 +Y + S V+QF+ +E GL+KFDFLGL+TLT++ +L + ++ +D Sbjct: 528 TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP D T+ LL T +FQLES GM++ + +QPDC EDIIALV+L+RPGP+ + Sbjct: 588 ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + +RK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L AD+LRR Sbjct: 648 GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+E F GA G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ Sbjct: 708 AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP F+AA M+ +MDN +K+ F + +Q++PPS+N F V D + Sbjct: 768 TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + I++ + PF L FC R+D +K+NRRV+E+L+ +GA D Sbjct: 828 IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + R L SL+ K A+ +N+++ ++F+ + +D+ + + + R E Sbjct: 888 WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHP D Y+ L I + ++ I + A VV+ ++ T++G Sbjct: 947 GEREVLGFYLTGHPADRYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 ++ + + +A F Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023 >gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906] gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906] Length = 1144 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 408/1032 (39%), Positives = 600/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A+ PA AITD NL ++F A AGI+PI+G + ++ + Sbjct: 1 MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGADVYLETE- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + +L GYQ L L+S Y G I WL Sbjct: 60 ---------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWLTTY-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGL++L+GG G + + + + E+ L ++ F D Y+ L R D + Sbjct: 110 EGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 V LA LP+VATN+ FL +D++AH++ +A+ +S RP+ +P Y++ E Sbjct: 170 VALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMSTEDFLIKKSKEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD VI +V + Sbjct: 345 GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R VD+S I D ++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V + +RK+G E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F +GA KNG+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+R ++KKLNRRV+E L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F + + + V E E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPDQVVLEGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ V T RG +++A +V++ + T++G+RIG T Sbjct: 944 YLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEIMLF 1015 >gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC 17616] gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC 17616] gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC 17616] gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC 17616] Length = 1179 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 409/1044 (39%), Positives = 609/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ +EGL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 LS +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825 Query: 833 NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + +F + L + Sbjct: 886 GAFDSLNANRAQLLASVT--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium HTCC2083] gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacteraceae bacterium HTCC2083] Length = 1168 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 495/1058 (46%), Positives = 680/1058 (64%), Gaps = 47/1058 (4%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + K+P F+HL+ H+ YSLLEGAL L + D + PA+A+TDTNNLF+ALEFS A Sbjct: 2 AMTKAPRFIHLRAHTEYSLLEGALRLKKLPDLCKSMDMPAVAVTDTNNLFAALEFSVGAS 61 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AG+QPIIGCQ+DI + Q +VLL GY+ L++L S +Y+ + Sbjct: 62 GAGVQPIIGCQVDITY-----LAAQPGERAKAPAPLVLLAQNEVGYENLMKLNSCLYIDN 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 G Q ++ L L + GLI L+GG G I + AE + FGDRLY Sbjct: 117 DG-QLPQVSLDDLDTLNA-GLICLSGGPEGAIGKLLQGGQRPAAEALMDRLHGAFGDRLY 174 Query: 184 VNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 V LQRH +R E V++AY LPLVATN+ F YEAHD L+ +A Sbjct: 175 VELQRHPENGGLPEAERLTERGFVEMAYAKSLPLVATNDVYFPKSSMYEAHDALICIADG 234 Query: 238 TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 Q R ++T HY K++ EMV++F+DLPEA++NT+EIA+RC+F Sbjct: 235 AYVDQQDPRRKLTAQHYFKSQEEMVTLFADLPEAIKNTIEIAKRCAF--------QAYRR 286 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E ELR A GL+ RLA I ++Y++RLDFEL++I M F GY Sbjct: 287 DPILPKFADDEVAELRRIANEGLQKRLA--VIPHSVTLEEYQERLDFELDIIEGMGFPGY 344 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK N IPVGPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMP Sbjct: 345 FLIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMP 404 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL Sbjct: 405 DFDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLS 464 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS++ +AD+ R RE + V RLL+ Q++EGL R+ASTHAAG+VIG Sbjct: 465 KMIPVEGVKPVSIEKALADEPRLREEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIG 524 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + G + Sbjct: 525 DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMEQITAGGRQ 584 Query: 596 VDL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + + + IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 585 LHIAADGTELYTPAAGTVDDINAIPLDDENSYKLYASAKTVAVFQVESSGMMDALKRMKP 644 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HPLID +L+ETQG+I+YQEQVMQ Sbjct: 645 TCIEDIVALVALYRPGPMENIPTYCEVKNGLKERESVHPLIDHILEETQGIIVYQEQVMQ 704 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA +NG+ A +F+LL KFA Sbjct: 705 IAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAKENGVPAKKASEVFDLLEKFA 764 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ ++ ++ Sbjct: 765 NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLDLPW 824 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN FKV + + Y+L A+K VG + ++E DKPF ++ D RVD K+ Sbjct: 825 VPPCVNRSDATFKVANGELVYALGALKNVGVEAMKLVVEGRGDKPFSTIYDLARRVDLKR 884 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE LV +GA D +R ++ SLD + Y+Q + + + + ++F E G Sbjct: 885 VGKRPLEMLVRSGAFDQLDPNRRRVFDSLDGLVNYSQAIFEQKNSNQVSLFG-EAGADLP 943 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI 995 + L S + R E R +GFY SGHPLD Y L++ G+ +E A G + Sbjct: 944 EPRLSPVSDWMPAERLNEEFRAVGFYMSGHPLDDYMAPLKRKGVMTLDEVTAKAENGALV 1003 Query: 996 -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA +V +Q++K+ +G+R + S+ + YE F Sbjct: 1004 AKLAGVVAGRQERKSARGNRFAFAQLSDTSGAYEVTLF 1041 >gi|91202895|emb|CAJ72534.1| similar to DNA polymerase III, alpha subunit [Candidatus Kuenenia stuttgartiensis] Length = 1155 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 398/1035 (38%), Positives = 600/1035 (57%), Gaps = 31/1035 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YSLL+GA + +++ K + PA+A+TD N++ A+EF + A +AGI+PI Sbjct: 6 FVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSAGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + L + K T+ I LL EGY+ L++L + YL + R Sbjct: 66 IGYEAYVAQGGRLDK--ESKNGKETLSHITLLAENYEGYRNLLKLSTSAYL-EGFYYKPR 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 I L + + G+I L+G + I+R F+ A + + +LFG+ Y+ +Q + Sbjct: 123 IDKELL-KSHSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQNN 181 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + S ++ T +PLVATN+ +++ +D AHD L+ + VS + R R Sbjct: 182 KIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRLRF 241 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y KN EM ++F ++P ALENT+ IA RC + LP+F E + Sbjct: 242 DTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGISNK--- 298 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G+ G +RLD EL VI + F YFLIV DFI +A Sbjct: 299 -AYLRKLCEEGVIR-------KYGAILPHISERLDHELKVIEKTGFVEYFLIVWDFIHYA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 NIP GRGSGAGS+ AY L IT+IDP+ LLFERFLN +R+SMPD DIDFC + R Sbjct: 351 NTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAEGR 409 Query: 428 DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 +E+IRYV+ KYG + VAQIITFG+++AKA +RDVGR L +P S+VD++ KLIPN Sbjct: 410 EEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLNIT 469 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ + + A+ L +IS+KLEGL RHAS HAAGIVI D PL++ VP+ Sbjct: 470 LE-EALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPLA 528 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 + + ++ ++K GL+K DFLG++ LT+++++L + + +DL+ IP DD Sbjct: 529 KKG-DAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTREIIDLAKIPVDD 587 Query: 606 HETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662 TY +L++ G+FQ+E+S G ++ L+ ++PD DI+ LV+LYRPGP+ + +V + Sbjct: 588 KATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGMVDSFI 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 NRK+GKE + IHP ++ +LKET GVI+YQEQVM+IA L+G++L+EAD LR+AMGKK Sbjct: 648 NRKHGKEAVEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADNLRKAMGKKKP 707 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E M K K++F++GA N I K A+ IFEL+ FA YGFNKSH+AAYAVI+YQTA++KT+ Sbjct: 708 EIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVITYQTAYLKTN 767 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAA 841 YP++++ A ++ E N EKI + +D R+ NI+I+ P VN DF + N+I + L + Sbjct: 768 YPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISEGNKIRFGLGS 827 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K G I+ A F S+ DFC RVD + +N++V+ESLV +G+ D R + Sbjct: 828 VKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGSFDSLSDDRAR 887 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957 LL SLD+ + V K + +F + + + N + + E+ Sbjct: 888 LLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPWNENEIRQAEKE 947 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LGFYFS PL Y+ ++ + E G ++ + ++ ++ T+KG + + Sbjct: 948 SLGFYFSSSPLSEYEEKIKLLATNSSSEISELPEGTDVIIGGIITDIKKSTTKKGDPMMY 1007 Query: 1018 VTFSEPAKEYEANFF 1032 +T + + F Sbjct: 1008 ITLDDMEGAIKCIAF 1022 >gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z] gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z] Length = 1158 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 593/1048 (56%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+ HS +S+++G + ++ + A+ +TD N ++F +A + Sbjct: 1 MTQ-PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + + + LL EGY+ + L+S+ Y Sbjct: 60 AGIKPIVGADVLVS----------SALCGDERFELTLLAKNNEGYKNITLLLSKAYQR-G 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E EGLI+L+GG G I + + AE L ++K F + Y+ Sbjct: 109 YDDLPYIDRDWLIE-HKEGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYI 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R YD R + LA H +PLVATN+ +FL ED+EAH++ +A+ + Sbjct: 168 SLARVGHYDEERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ TP Y ++ EM +F+D+P ALENT+ IA+RC+ +++ + + Sbjct: 228 KRPQLYTPQQYFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQ-----YFLPQFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + E+ L +A GLE RL ++ Y +RL+ EL VI +M F GYFLI Sbjct: 283 GELSTEDYLVKRAKDGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC + RD VI +V YG V+QIITFG++ AKA +RDVGR L Y VDR+ KL+ Sbjct: 403 VDFCMEGRDRVIDHVAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLV 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + +EA +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + R Sbjct: 522 TDFSPLYCDSEGRHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKP 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +V + IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 582 EVRIESIPLDDPESFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LQSGMVDNFIDRKHGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K H+P EF+AA MT EMDN +KI + + +++ PP +NT Sbjct: 762 AYALVSYQTLWLKAHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHH 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG +++A + F L D C+RVD K++NRR ESL Sbjct: 822 FSVNDHGEIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L ++L++ + + K+ ++F G + Sbjct: 882 IKSGAFDKLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E+ LG Y S HP+ Y L ++ V RG ++VS Sbjct: 942 RWTEKQILDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACGLIVSS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KGSR+G + + + + F Sbjct: 1002 RFAVTKKGSRLGIASLDDRSGRLDITLF 1029 >gi|313893027|ref|ZP_07826604.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon 158 str. F0412] gi|313442380|gb|EFR60795.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon 158 str. F0412] Length = 1135 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 368/1031 (35%), Positives = 600/1031 (58%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL T EGY+ L+++VS+ R Sbjct: 64 IGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLTEEAKAQEELIKLSKEYGLGVVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +FS +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAQLFSHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG ERV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GKAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + ADP+V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI ++IA +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V + I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD+K +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ ++F + + D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIAVPNVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + TR+ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 1180 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 524/1050 (49%), Positives = 697/1050 (66%), Gaps = 26/1050 (2%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 K+P FVHL+VHS+YSLLEGAL + + A Q PA+ +TD+NN F ALEFS K A Sbjct: 7 AKAPQFVHLKVHSAYSLLEGALPIAKLAKLAEAMQLPALGLTDSNNFFGALEFSDKLWGA 66 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRM 119 G+QPI G LD+D DN P I LL TA+G+ L+ L + Sbjct: 67 GVQPIAGGSLDVDFGDNRDAQPSALRSLSNEPRSKPAGKIALLAMTADGFANLMRLSKAL 126 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y + + ++ ++E +EG+I LTGG GPID A +A +R+ T +K+FG Sbjct: 127 YFEAAADEPAHVKIARIEEF-SEGIIALTGGPQGPIDSALRDGQHDLALERIKTLEKIFG 185 Query: 180 DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DRLYV +QRH + E ++ LAY +P+VATN F DYEAHDVL+ +A Sbjct: 186 DRLYVEVQRHGLPEEADVEPDLLDLAYARRIPIVATNECYFAQRGDYEAHDVLLCIADGR 245 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V + +R R +P+HYLK +EMVS+F+DLPEAL NTVEIA RC+ + PILPRF++ Sbjct: 246 YVVEDNRRRASPEHYLKTEAEMVSLFADLPEALANTVEIAMRCTARPEGRKPILPRFVKA 305 Query: 299 ECDDIQKE----EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + E E EL+ +A GL RLA A G+ +DY +RL +E++VI +MKF Sbjct: 306 DDSLSEIENFRLEAAELKAQAKDGLARRLAAHGPAAGFTVEDYEKRLVYEIDVITQMKFP 365 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI+W+K N +PVGPGRGSGAGS+ AYALTITD+DPL+F LLFERFLNP+R+S Sbjct: 366 GYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLQFGLLFERFLNPERIS 425 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DFCQ++RD VI YVQ KYG +RVAQIIT G LQA+A LRDVGR LQMPY QVDR Sbjct: 426 MPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQMPYGQVDR 485 Query: 475 LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 LCKL+PN+PA+PV+ QAI + + +E R +P V RLLEI+QKLEGLYRHASTHAAG+V Sbjct: 486 LCKLVPNNPANPVTLAQAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHASTHAAGMV 545 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592 IGDRPL +LVP+YRD +S P+TQ+N K +E AGL+KFDFLGLKTLT+L+K++ ++Q R Sbjct: 546 IGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVKLISQVR 605 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 GV VDL +P DD TY +L T G+FQLES+GMR++L+ ++PD EDIIA+V+LYRP Sbjct: 606 GVTVDLPSLPLDDKPTYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAMVALYRP 665 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+DNI Y NRK+G+E + +H ++ +LKET GVIIYQEQV+QIAQ++ GY+L +AD+ Sbjct: 666 GPMDNIPTYINRKHGEEPVDYLHDMLQGILKETYGVIIYQEQVIQIAQVMGGYTLGQADM 725 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK K EM KQ+ RF+ GA G+ K A IFEL+ KFA YGFNKSHAAAYA++ Sbjct: 726 LRRAMGKKDKAEMAKQQARFVEGAVAKGVKKEEAKYIFELVDKFAGYGFNKSHAAAYALV 785 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SY TA++K ++ EF AASMTL+M N +K+ F +AR+ I+++PP VN VDF V Sbjct: 786 SYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNQSAVDFGVEP 845 Query: 833 -------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884 I YSLAA+K +G I+ F SL DF RVD+K LN+R +E+ Sbjct: 846 AAEGAKHGAIRYSLAALKNIGAGAVETIVNERNEKGAFKSLADFAERVDAKALNKRAIET 905 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L GA D F R ++ + D I AQ N ++F G + ++ L Sbjct: 906 LAKGGAFDAFNNDRARVAANADTILASAQRRTANEAQGMTDLFG--SGGKAAELVLRSAE 963 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNI-RLAAMVV 1002 R E +GFY SGHPLD Y +L K+G++ + E RG RLA +V+ Sbjct: 964 GWTPMERLAAEFEAIGFYLSGHPLDQYDHVLSKLGVRKFTEFEVLTERGATAGRLAGVVI 1023 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++++++KG++ + +FS+ ++EA F Sbjct: 1024 AARERRSQKGNKFAFASFSDATGQFEAVIF 1053 >gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179] Length = 1177 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 417/1052 (39%), Positives = 613/1052 (58%), Gaps = 40/1052 (3%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 L + + +P FVHL+VHS +S+++G + ++D+ A Q A+A+TD N ++F Sbjct: 17 LGKIMS-APKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYG 75 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 G++PI+G + ++ ++ S+ LL GYQ + L+SR Y Sbjct: 76 ATLGKGVKPIVGADVLVNSEE----------LADEPFSLTLLAKNNAGYQNITLLLSRAY 125 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + I WL E EG+I+L+GG G + + + AE L +++ F D Sbjct: 126 QRGYREY-PMIDREWLIE-HAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPD 183 Query: 181 RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + R D Q+ V LA H++PLVATN+ +FL EED+EAH++ +A+ Sbjct: 184 HFYLAISRTGRNDEEHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYT 243 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +RP+ +P Y ++ EM +F+DLP+ALEN+V IA+RC+ +++ Sbjct: 244 LDDPNRPKKYSPQQYFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYF-----LP 298 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSG 355 + E+ L +A GLE RLA + Q Y +RL+ EL VI +M F G Sbjct: 299 QFPTGDLSTEDYLIQQAKTGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPG 358 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV +FIQW+K NNIPVGPGRGSGAGS+ AY++ ITD+DPL+F LLFERFLNP+R+SM Sbjct: 359 YFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSM 418 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ Sbjct: 419 PDFDVDFCMDGRDRVIEHVAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 478 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP DP + +A + + EA +D V L+++ +KLEG+ R+A HA G+VI Sbjct: 479 AKLIPPDPGMTL-QKAFDAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVIS 537 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 ++ P+Y D PVT F+ +E AGL+KFDFLGL+TLT++Q ++D + +R + Sbjct: 538 PSKITDFSPIYCDSEGKHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRR 597 Query: 596 -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +D+ IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+ Sbjct: 598 EGKPEIDIHHIPLDDEKSFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALF 657 Query: 651 RPGPIDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGP+ + +V N + + H + P+L T G+I+YQEQVMQIAQ+L+ Sbjct: 658 RPGPLQSGMVDNFIRRKHGEEEISYPDAEYQHQSLKPILDPTYGIILYQEQVMQIAQVLA 717 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GY+L AD+LRRAMGKK EEM KQ+ F GA KNG+ +A+ IF+L+ KFA YGFNK Sbjct: 718 GYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNK 777 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA++SYQT W+K H+P EF+AA MT EMD VEKI F ++ + ++++PP +NT Sbjct: 778 SHSAAYALVSYQTLWLKAHFPAEFMAAVMTSEMDKVEKIVNFYDESLRMGLKVVPPDINT 837 Query: 824 PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 F V + I Y L AIKGVG +I+EA + F L D C+RVD +K+NRR Sbjct: 838 GKYGFSVNEKGEIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRT 897 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940 ++L+ AGALD G R + +L++ K + K+ ++F + + Sbjct: 898 FDNLIKAGALDKLGPHRAAIALNLEDALKASDQHAKDEALGQTDMFGVLASSPKQVEQAY 957 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + EQ LG Y S HP+ Y L E T RG + ++ + Sbjct: 958 ANTPKWTEKMVLDGEQETLGLYLSSHPISRYLKELSHYSN-RLSEVSVTRRGESCTVSGL 1016 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 VV+ + T++G+R+G +T + + + F Sbjct: 1017 VVNFRSLVTKRGNRLGILTLDDRSARMDITLF 1048 >gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48] gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48] Length = 1142 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 514/1035 (49%), Positives = 678/1035 (65%), Gaps = 26/1035 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S FVHL+V S+YSLLEGA+ ++ A + PAIAI D NLF ALEFSQ G+ Sbjct: 2 SDGFVHLRVRSAYSLLEGAIKAYDMGKLAAKAKMPAIAICDRANLFGALEFSQVCKDTGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 QPII C L + KTP IVL+V +GY L EL S+ YL + Sbjct: 62 QPIIACALPVKGIGGTLSDRWAKTPT-----IVLIVQNEQGYLNLTELSSKAYLDIEATD 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + + + EGLI+L+GG GPI+ F N A L FGDR Y+ LQ Sbjct: 117 EPHVLWEEVVKR-AEGLILLSGGPDGPINPLFKQNQPDEANAALKDMHAAFGDRFYIELQ 175 Query: 188 RH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 RH ES +VQ AY H +PLVATN++ F + ++AH+ L+ ++ ST + Sbjct: 176 RHDGSPHGGIRGDSAESGLVQFAYAHGVPLVATNDAYFADRDMFKAHEALLCISDSTFMG 235 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR +VT DH+LK M +FSDLPEA +NT+EIARRC+F++ PILPRF Sbjct: 236 VADRRKVTKDHWLKPPLLMREVFSDLPEACDNTLEIARRCAFLVSKRDPILPRFDT---- 291 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E+ EL +A GL++RL Q A +DY RLD E+ VI +M F GYFLIV+ Sbjct: 292 GAGRSEDEELAFQAREGLKMRLQQVEPAF--PEEDYWARLDREVGVIQKMGFPGYFLIVS 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDID Sbjct: 350 DFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+RR+EVI YVQ KYG ERVAQIITFG+LQA+A LRD GR +Q+P QVDRLCK++PN Sbjct: 410 FCQERREEVITYVQEKYGRERVAQIITFGTLQARAVLRDTGRVMQLPLGQVDRLCKMVPN 469 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +PA+P + QA+ + R REAR + SV +LL+ + KLEGLYR+ASTHAAGIVIGDR L+ Sbjct: 470 NPANPTTLAQAVEIEPRLREARDEEESVAKLLDTALKLEGLYRNASTHAAGIVIGDRSLT 529 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT L ++ +L +RG++VD S Sbjct: 530 ELVPLYRDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTTLNRAWHYLKKRGLEVDFST 589 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD TY LL + ++G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI Sbjct: 590 LPLDDKITYELLASGQSIGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDT 649 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y +RK G+ I +HP ++P+L+ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 650 YVDRKFGRADIDMLHPSLEPVLRETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKK 709 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 KEEMD QK RFISGA + G+ + + +IFEL+ KFA YGFNKSHAAAYA ISYQT W+K Sbjct: 710 KKEEMDLQKARFISGAKEKGVPEKQSDSIFELVNKFAGYGFNKSHAAAYAFISYQTGWLK 769 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 ++PVEF AA+M+L++ N +K+ F QDARQF + I PP +N DF V + + Y+L Sbjct: 770 ANHPVEFFAANMSLDITNTDKLAVFYQDARQFGVTIRPPDINRSKADFDVENGEVLYALG 829 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+ VG ++ A PF + DF R+D K +N+R +E+L AGA D +R Sbjct: 830 AIRNVGLEAMHSVVAVREAGGPFKDIFDFLERIDPKAVNKRAIENLARAGAFDSIHPNRA 889 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 Q++QS D + +AQ + R + ++F + + L + + E + Sbjct: 890 QIIQSADLLIAHAQSMAAERASAQVSLFGTNDSS---RPRLPNIPKASGPDALDEELSAV 946 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRK-GSRIG 1016 GFY SGHPL + ++ + Y E++A G R+A +V +Q++ + + G + Sbjct: 947 GFYLSGHPLQDMVDVFKRRNVTLYAEALALAQEGREAFRMAGVVRRRQERASARTGEKFA 1006 Query: 1017 WVTFSEPAKEYEANF 1031 +V S+P+ EYE F Sbjct: 1007 FVNLSDPSGEYEVMF 1021 >gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1] gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1] Length = 1179 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 608/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + WL+ +EGL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDARWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 LS +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+S+ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ D Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825 Query: 833 NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + +F + L + Sbjct: 886 GAFDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM 4582] gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM 4582] Length = 1172 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 422/1053 (40%), Positives = 607/1053 (57%), Gaps = 41/1053 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 Q + + P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 9 QDMAE-PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSA 67 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PIIG + Q + + +L + +GYQ L L+SR Y Sbjct: 68 HGAGIKPIIGADFHV----------QSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQR 117 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 G I WL E EGLI+L+GG G + + + E+ L +++ F D Sbjct: 118 GYGAAGPIIDRDWLVE-HREGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNY 176 Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R D V LA +LP+VATN+ FL E+D++AH++ +A+ + Sbjct: 177 YLELIRTGRPDEENYLHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLD 236 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RPR +P Y++N EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 237 DPKRPRNYSPQQYMRNEDEMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQF 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYF Sbjct: 292 PTGDMTTEDFLVAKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYF 351 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD Sbjct: 352 LIVMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 411 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ K Sbjct: 412 FDVDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 471 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI Sbjct: 472 LVPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 530 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 ++ P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K D Sbjct: 531 KITDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTD 590 Query: 598 LSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 L IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RP Sbjct: 591 LPPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 650 Query: 653 GPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY Sbjct: 651 GPLQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGY 710 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EM KQ+ F GA GI +++ IF+L+ KFA YGFNKSH Sbjct: 711 TLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSH 770 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 771 SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQ 830 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRV 881 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRR+ Sbjct: 831 YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRI 890 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940 LE L+ +GA D G R L+ SL + K A K ++F + + + Sbjct: 891 LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSY 950 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAA 999 + V + E+ LG Y +GHP+ Y + + G + ++ T RG Sbjct: 951 ANVAPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVG 1010 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +VV+ + T++G+RIG T + + E F Sbjct: 1011 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1043 >gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2] gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus c2] Length = 1168 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 400/1055 (37%), Positives = 593/1055 (56%), Gaps = 51/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL +H+ +SL++G L + +L PA+A+TD NLF+ ++F + A +GI+P Sbjct: 2 SFVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + + P T +VLL G++ L EL+SR Y Q + Sbjct: 62 ILGADCLVVDE-----------PGSTPYRVVLLAQNNLGFRHLTELLSRGYCEGQIQDRP 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 + WL + GLI L+GG G I + ++ + + + + F DR Y+ L R Sbjct: 111 MLRREWLTQEQCAGLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRC 170 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + V+LA +LP+VATN+ FL +E++EAH+V + + V+ RP Sbjct: 171 GRPDEEKYLHAAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHD 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T YL+ EM ++F+D+PEA+EN++ +A RC+ LQ+ LP F + E Sbjct: 231 YTALQYLRPADEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGE----TE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + GL R + + YR+RL+ EL+VI +M FSGYFLIVADFIQWA Sbjct: 287 ADYLRTLSEQGLAHRFERVP---AEQHEAYRERLNIELDVIIQMGFSGYFLIVADFIQWA 343 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+ IPVGPGRGSGAGS+ A+AL ITDIDP+ + LLFERFLNP+R+SMPDFDIDFC + R Sbjct: 344 KRQGIPVGPGRGSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGR 403 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV +YG V+QI T G++ AKA +RDVGR + PY VDR+ KLIP P V Sbjct: 404 DRVIDYVAERYGRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDV 463 Query: 488 SLQAI------------ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 +L+ FR+ D V ++++ LEGL R+ HA G+VI Sbjct: 464 TLEDALGRTERSQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIA 523 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV- 594 L+ PMY + +Q + +E GL+KFDFLGL+ LT++ +L + Sbjct: 524 PSKLTDFTPMYCESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQK 583 Query: 595 ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 VD+++IP DD +++LL T +FQLES GM+ + +QPD EDIIALV+L+ Sbjct: 584 VGKEPVDITVIPLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALF 643 Query: 651 RPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + +V + K +KI +HP + +LK T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 644 RPGPLQSGMVDDFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+E F+ GA + T A IF+L+ KFA YGFNKSH+AA Sbjct: 704 GADLLRRAMGKKKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++YQTAW+K HYP F+AA ++ +MDN +KI + ++ + ++PP VN F Sbjct: 764 YALVAYQTAWLKAHYPAHFMAAVLSADMDNTDKIVGLIGECQRMGLNVIPPDVNHCAYKF 823 Query: 829 KV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886 + ++ + Y L AIKGVG + I+E PF + DFC RV S+ LN+RVLE++V Sbjct: 824 QALDEHTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMV 883 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945 AGALD G +R L + + K A ++ ++F + + ++ + Sbjct: 884 LAGALDTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEP 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---------IRGNNIR 996 + + E+ LG Y +GHP+ ++ L+ + + +G + Sbjct: 944 WPDAEQLRKEKDTLGLYLTGHPIHAFRDELKSLVSDTLSGLLDKLDIPAPGTFPKGVPVT 1003 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +A + ++++ + + G R ++T + E Sbjct: 1004 VAGLAIAERIVRQQNGDRQLFLTLDDGEGRCEVRI 1038 >gi|51598831|ref|YP_073019.1| DNA polymerase III subunit alpha [Borrelia garinii PBi] gi|51573402|gb|AAU07427.1| DNA polymerase III, subunit alpha [Borrelia garinii PBi] Length = 1147 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 398/1035 (38%), Positives = 610/1035 (58%), Gaps = 23/1035 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VHS YSLL+GA +++I+ K IA+TD NLF A++F ++A Sbjct: 1 MSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + + + ++LL GY+ L++L S YL + Sbjct: 61 AGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L++ +EGLI + G I R N + A+ +L FKK+FG+ Y+ Sbjct: 118 FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILGNRFEDAKNEILWFKKVFGNDFYL 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH D+ ++V+ + +PL A N+S +++ ED A D+++ + S + Sbjct: 177 ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAIAQDIIVCIGTGAKKSDE 236 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301 +R ++ T + Y+K++ EM +F+DLPEALENTV I + F + PILP + Sbjct: 237 NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 296 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + GL+ + R +EL+VI RM F GYFLIV Sbjct: 297 N---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIVW 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++A N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID Sbjct: 347 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+ Sbjct: 407 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPD 466 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P VSL+ + DD+ +E + P L++ + LEG+ RHASTHAAGIVI PL+ Sbjct: 467 GP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 VP+Y+D + TQ+ M +E+ GL+K DFLGLKTLTL++ + + + + I Sbjct: 525 YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D +T+ +L + +FQ ES GM+Q L+ +PD IED+IAL +LYRPGP+ I + Sbjct: 585 PDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQF 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 K G + I HP + +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK Sbjct: 645 IAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++EMD+ K F+ GA + G K +A IFELL F+ YGFNKSHAAAY++I+YQTA++K Sbjct: 705 EDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YP F+AA++T E++N +K+ + ++++ I ++ P +N +F+V D+ I Y L A Sbjct: 765 NYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNA 824 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I++ + + S E+F RVD K +N++ LES + +G D +R Sbjct: 825 IKNLGEIVVDLIIDEREKNGKYSSFENFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 884 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRV 958 L ++LD + + + N+ ++F KG + F + S E E+ + Sbjct: 885 LFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIHQNFNYQAFKEYSYSELLEFEKEL 944 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017 LGFY SGHPLD YK + + +AT + + ++ + ++ S + +T++ + ++ + Sbjct: 945 LGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1004 Query: 1018 VTFSEPAKEYEANFF 1032 + + F Sbjct: 1005 GVIEDFKGAIDIVVF 1019 >gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68] Length = 1140 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 418/1028 (40%), Positives = 603/1028 (58%), Gaps = 38/1028 (3%) Query: 26 ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85 ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 Q + + +L + GYQ L L+S+ Y G I WL E+ EGLI Sbjct: 53 --QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204 +L+GG G + R+ +S + ++ + +++ F DR ++ L R D V+LA Sbjct: 110 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169 Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263 LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ EM + Sbjct: 170 EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229 Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323 F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GLE RL Sbjct: 230 FADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERL 284 Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 A + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS Sbjct: 285 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG Sbjct: 345 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500 + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + + E Sbjct: 405 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ Sbjct: 464 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTK 615 +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ +L Sbjct: 524 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673 T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E+I Sbjct: 584 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643 Query: 674 -----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ Sbjct: 644 PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+ Sbjct: 704 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847 AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIKGVG Sbjct: 764 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL Sbjct: 824 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883 Query: 907 NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + K A K ++F + + + V + E+ LG Y +G Sbjct: 884 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943 Query: 966 HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T + + Sbjct: 944 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003 Query: 1025 KEYEANFF 1032 E F Sbjct: 1004 GRLEVMLF 1011 >gi|301167724|emb|CBW27308.1| DNA polymerase III alpha subunit [Bacteriovorax marinus SJ] Length = 1215 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 370/1067 (34%), Positives = 592/1067 (55%), Gaps = 43/1067 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 SFVHL +H+ YSLL+GA+ L +++ PAIA TD N+F A++F ++ +A Sbjct: 19 THPNSFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQTDHGNMFGAIDFYKRCKSA 78 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPT----------VPSIVLLVSTAEGYQRLIEL 115 GI+PI+G ++ + ++ + + ++LL GYQ L +L Sbjct: 79 GIKPILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIHHLILLAKNNIGYQNLCKL 138 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +SR YL + R + L+E +EGLI T G + FF + A + + + Sbjct: 139 LSRAYL-EGFYYKPRADIELLKEY-SEGLICTTACLKGEVGYNFFTGQDEKAVRAIEKLQ 196 Query: 176 KLFG-DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG + Y+ +Q + ++ +V++ A ++ +VATN++ +++ ED A +VL+ Sbjct: 197 EVFGYEDFYLEIQENGIPEQADVNRKVLEYAKEKKVKVVATNDAHYMTPEDATAQEVLLC 256 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL--QVHAP 290 + + ++R ++ + + Y K+ +M F PEA + T+EIA +C+ L Sbjct: 257 IQTGKSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLEIADKCNVELNWTDEQG 316 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI--------AKGYHAQDYRQRLD 342 + D + E++ R GLE R K Y +RL Sbjct: 317 NQIYHLPDYPIDTGETEDDYFRRMCKEGLEERFRGPHFTKLVSEDNWKAELEPKYWERLK 376 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +E+++I M F GYFLIVADFIQW+K N IPVGPGRGSGAGS+ AYA+TIT+IDPL ++L Sbjct: 377 YEVDMIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLAAYAMTITNIDPLPYNL 436 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERF+NP+R+SMPDFD+DFCQ R VI YV KYG E+V QIITFG LQAKA ++DV Sbjct: 437 LFERFINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQIITFGKLQAKAVVKDVS 496 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R + +++ + L KLIP++ + +AI + + +E D + ++ IS++LEGLY Sbjct: 497 RVFDLSFAEANMLSKLIPDELGINLE-KAIEMEPKIQELIDTDSKIRQIFTISRRLEGLY 555 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 RHA HAAG++I +PL + P+++ + + V F+ + E+ GL+KFDFLGLKTLT++ Sbjct: 556 RHAGIHAAGVIITSKPLVEYCPLFKGAKGEKVVQ-FDKDFSEEIGLVKFDFLGLKTLTVI 614 Query: 583 QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 + F D+ I ++D + Y + T+G+FQLESSGM + + PD I+ Sbjct: 615 DYASKFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSGMIDLCKRIMPDSID 674 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DI A+ +LYRPGP+ + K+G++K + P+LK+T G+I+YQEQVM IA Sbjct: 675 DITAINALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDTYGIIVYQEQVMNIA 734 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GY+L +AD+LR+AMGKK +++ +E F+ GA++ G A +++L+A FA+Y Sbjct: 735 RVLAGYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEKAGELYQLMASFAEY 794 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSHA AY+ IS+QTA++K +YP F A ++ E+ N +K+ + DA+ ++++PP Sbjct: 795 GFNKSHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVYINDAKNHGVEVLPP 854 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLN 878 VN F V I + + AIK VG + E + PF DFC+RV K +N Sbjct: 855 DVNESLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKGFIDFCTRVSLKIVN 914 Query: 879 RRVLESLVFAGALD--CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 RV+ESL+ GA D +R +L++ + I YA+ ++ + ++F + D Sbjct: 915 NRVIESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELGQVSLFDMGGSSSDD 974 Query: 937 KITLEKFS--------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + + + + E +++G Y SGHPLD Y I+ K+ + Sbjct: 975 DGSNDPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDIMGKLASMDIAAARD 1034 Query: 989 TI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ K+ T+KG R+ + + + + E FP Sbjct: 1035 LTGGDKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVFP 1081 >gi|223939595|ref|ZP_03631470.1| DNA polymerase III, alpha subunit [bacterium Ellin514] gi|223891753|gb|EEF58239.1| DNA polymerase III, alpha subunit [bacterium Ellin514] Length = 1224 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 388/1085 (35%), Positives = 577/1085 (53%), Gaps = 69/1085 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL +H+ YSLL+GA L+ ++DK + P++AITD LF A++F + A Sbjct: 1 MSHA-DFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + + + +VLL GY+ LI+LV+ +L + Sbjct: 60 KGIKPIIGCEVYVAPHSRTEKKSANGGR-DVYNHLVLLAKDEIGYKNLIKLVTAAHL-EG 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L EGLI L+G + I A ++ Q A + FK+ G + Y Sbjct: 118 YYYKPRIDKEILAA-NKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFY 176 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ ++ A L LVA+N+ ++ + AHD L+ + T ++ Sbjct: 177 LELQNHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLAD 236 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R + YL++ EM + F+++PEA++NT+E+A +C+ ++ P F E Sbjct: 237 TKRMKYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPE-- 294 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKG------------------------------ 331 E LR GL R A+G Sbjct: 295 --AYTREGYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNG 352 Query: 332 ------------------YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 + RL EL VI + F YFLIV DF+++ ++ I Sbjct: 353 NGHHVDEPITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGI- 411 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 RGS AGS+ Y L I ++DP+R++LLFERFLNP+R++ PD DIDF DRR +VI Y Sbjct: 412 SCVARGSAAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEY 471 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V+ KYG+ VAQI+TFG++ AK+ LRDVGR + + Y DRL K+IPN+ + +A+ Sbjct: 472 VRKKYGNSSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDL-HKALK 530 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + A + L++ + LE + R++S HAAG+VIGD+PL L+P+ +D Sbjct: 531 QSPDLKAAYDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDE-EGT 589 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612 VTQ+ M + + GL+K DFLGLKTLT+++ + + + V V + +P DD +TY LL Sbjct: 590 LVTQYAMNPVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVPIDNLPLDDKKTYDLL 649 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 TLG+FQLES GMR Q +E I ALV+LYRPGP+D I + R++G+ KI Sbjct: 650 NNARTLGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDLIPEFIKRRHGEVKIE 709 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 HPL++ + ET G+++YQEQVMQ AQ L+GY+L AD+LRRAMGKK EEM KQ+E F Sbjct: 710 YEHPLLEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQRETF 769 Query: 733 ISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 + GA+ A IF+LL KFA YGFNKSHAAAYA+++YQTA++K +YPVEFL+A Sbjct: 770 VKGAASINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFLSAM 829 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTT 849 MT +M + K+ +F +AR I+++PP VN V F I + LAAIKGVG Sbjct: 830 MTNDMADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVGEIA 889 Query: 850 ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I++A F SL D C RVD + +NR+VLE+L+ +GA D F +R + +D Sbjct: 890 VQSILDARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHIDKA 949 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHP 967 A + ++R ++F + DK + K + E+ +LGFY +GHP Sbjct: 950 LTRAAGIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVTGHP 1009 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026 ++ Y P+L K + E R+ +V QQ ++K VT + Sbjct: 1010 INPYVPLLEKYALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLEDLDGT 1069 Query: 1027 YEANF 1031 + Sbjct: 1070 VQLLC 1074 >gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10] gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10] Length = 1147 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 514/1035 (49%), Positives = 676/1035 (65%), Gaps = 20/1035 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL+V S YS+LEGA+ + +++ PAIA+TDTNNLF ALEFS+ Sbjct: 1 MAAQLPFVHLRVRSPYSVLEGAIRMPKMVEACQTHGMPAIALTDTNNLFGALEFSEVLSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GC L + + D + G+ P +VLL GY L+ L S YL Sbjct: 61 AGVQPIVGCTLKVRLGD----PHPGERAEPDGT-LVLLAQDEVGYGNLMALSSAAYLDVD 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + I S + + GLI LTGG G ++R A L FGDRLYV Sbjct: 116 GSEEPHIPFSLVLD-HAAGLIALTGGPDGLLNRLITGGRQPEAATYLDQLASAFGDRLYV 174 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH + E +V AY +LPLVATN + F + ++AHD L+ ++ S+ VS Sbjct: 175 ELQRHGLEAELEAEDWLVGQAYARDLPLVATNEAYFPDQSMHKAHDALLCISESSFVSVA 234 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVT DHYL EM + F+DLPEAL NT+EIARRC+F ++ HAPILP F + Sbjct: 235 DRRRVTADHYLTTPEEMNARFADLPEALTNTIEIARRCAFRVRTHAPILPSFPTEGG--- 291 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E EL +A GL RLA +I DYR RLDFEL++I +M F GYFLIV+DF Sbjct: 292 -RTEVEELIARAHEGLTDRLA--SINAAAPEADYRARLDFELDIIKQMGFPGYFLIVSDF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK N+IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFD+DFC Sbjct: 349 IQWAKNNDIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDVDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR EVIRYVQ +YGH+RVAQIITFG+LQA+A +RD GR LQ+P VDRL K++P +P Sbjct: 409 QERRGEVIRYVQEQYGHDRVAQIITFGTLQARAVVRDTGRVLQLPLGLVDRLAKMVPANP 468 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A+PV+ QA+ + R RE R D SVD LL ++ KLEGL+R+ASTHAAG+VIGDR LS+L Sbjct: 469 ANPVTLAQALDIEPRLREMRRDDESVDTLLTVALKLEGLFRNASTHAAGVVIGDRKLSEL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++A D+ + Sbjct: 529 VPLYRDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVIARALGYIASTGKDVPDIEGL 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 FDD T+ LL + +G+FQLESSGMR L+ M+PD IED+IAL+SLYRPGP+ NI VY Sbjct: 589 DFDDQATFDLLQSGHAIGVFQLESSGMRDTLKKMKPDAIEDLIALISLYRPGPMKNIDVY 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK G+ ++ +H ++ +L ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 649 VDRKFGRAEVDCLHADLEGVLSETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 708 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KEEMDKQK RF+ GA G+S+ A IFEL+A+FA YGFNKSHAAAYA I+Y+T ++K Sbjct: 709 KEEMDKQKVRFLEGAEAKGVSREKASYIFELVAEFAGYGFNKSHAAAYAAIAYRTGYLKA 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +YPVEF+AA M+L+ N +K+ F Q+ R+ + + PP VN DF V + I ++L A Sbjct: 769 NYPVEFMAALMSLDAANTDKLSAFFQEVRRMKLDVRPPDVNASQADFSVEEGTIRFALGA 828 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 I+ VG HI+E A+ PF L DF RVD +++N+R E+L AGA D R + Sbjct: 829 IRNVGFVAMEHIVEERTANGPFRDLYDFAERVDPRQVNKRTFENLAKAGAFDSLDPDRAR 888 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++ S + + AQ + R + ++F + ++ L + ++ R + E + Sbjct: 889 VMASAETLISMAQHAAEQRESAQASLFGGGGEEAQLERPRLPEPDPWTATQRLDAELSAI 948 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKT-RKGSRIG 1016 GFY SGHPLD L G+ + E+ G RLA MV +Q++ + + G R Sbjct: 949 GFYLSGHPLDDLTEHLAGRGVVFFAEAPARVADGATALRLAGMVRRRQERVSNKNGERFA 1008 Query: 1017 WVTFSEPAKEYEANF 1031 W T S+P E+E Sbjct: 1009 WTTLSDPTGEFEVFV 1023 >gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N] gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N] Length = 1163 Score = 755 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 402/1055 (38%), Positives = 608/1055 (57%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+++G + + ++ ++A QPA+A+TD +NLF ++F + Sbjct: 1 MSEAVTTPPPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PI G + + ++ ++LV +GY L EL+S+ + Sbjct: 61 SARGAGIKPIAGADVWLSNDEDRDKP----------FRALILVRNNQGYLNLCELLSQAF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L++Q K + WLQ G EGLI+L+GG +G I A ++ A + +F Sbjct: 111 LVNQYKGRAEVRREWLQ--GQEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL +++++AH+ + +A + Sbjct: 169 AFYIELQRAGMDGDETYTQAAMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R +P YL++ EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 229 LADPRRVRRFSPQQYLQSSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 E + ++ L + GLE L + Y QRL +E + I +M F G Sbjct: 289 EGVSL----DDYLVQLSEEGLEKRLAFLYPDEAERARQRDSYYQRLRWECSTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIEYVKLKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +PA P S + + ++ FR+ + V L++++Q LEGL R+ HA G++I Sbjct: 465 SKLIPFNPADPWSLERTLKEEPAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 525 APGKLTDFCPLYCQPGQENYAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LY Sbjct: 585 PDQRDFDIMALSLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + HP ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+ ++++PP VN F Sbjct: 765 YALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNASGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 ++ + Y L A+KG G I+ A AD PF +L DFC RV + Sbjct: 825 APVEDEHTARGKPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFVNLFDFCRRVGKHAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 885 NRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAE--QAARSANQASLFGDDSSEVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + N + E+ LG+YFSGH D ++ +R++ + Sbjct: 943 -ELTKVAPWNLHTQLTEEKAALGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ S + TR+G + + + + E + F Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033 >gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7] Length = 1163 Score = 755 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 409/1049 (38%), Positives = 611/1049 (58%), Gaps = 45/1049 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SPSFVHL+VHS +S+++G + +++ K A QPA+A+TD +NLF ++F + A AG Sbjct: 6 SSPSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI G + + Q + ++LL S +GY L EL+SR +L +Q + Sbjct: 66 VKPIAGSDVWL----------QNEQDRDKPYRLLLLASDQQGYLALCELLSRAWLDNQYR 115 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WLQ G GLI+L+GG +G I + + + A ++ + F D ++ L Sbjct: 116 GRAEIRREWLQ--GKTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIEL 173 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR D ++LA LP+VAT+ FL +D+ AH+ + +A + R Sbjct: 174 QRSGHEGDETYVQAAMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAKR 233 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + YL + ++M F+D+P AL NT+EIA+RC+ L + P LP F + Sbjct: 234 VRKYTTEQYLLDSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGV--- 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361 ++ L A GL VR+AQ + + Y +RL +E I M F GYFLIVA Sbjct: 291 -TLDDYLVQLAEEGLAVRMAQLFPEEAERQEKYPQYLERLQWECKTIIGMGFPGYFLIVA 349 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI W K N +PVGPGRGSGAGS+ AY+L ITD+DP+R+ LLFERFLNP+R+SMPDFDID Sbjct: 350 DFINWGKSNGVPVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDID 409 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RDVGR L+MPY D L KLIP Sbjct: 410 FCQDNRERVIDYVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIPF 469 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 PA P + +A+ ++ F+E D V L+++++ LEGL R+ HA G++I L+ Sbjct: 470 SPADPWTLKRALEEEPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLT 529 Query: 541 QLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKV 596 P+Y V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 530 DFCPLYCQPGVDTSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDF 589 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+ +P DD + Y LL+ T +FQLES GM++ L+ ++P+ ED+IA+++LYRPGP++ Sbjct: 590 DIMALPLDDAQAYKLLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPLE 649 Query: 657 NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + + NRK+G+ ++ HP ++P+L+ T GVI+YQEQVM I+Q++ GY+L AD+LR Sbjct: 650 SGMVVDFVNRKHGRAEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLLR 709 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM K + F GA + G +AV +F+L+ KFA YGFNKSH+AAYA+I+Y Sbjct: 710 RAMGKKKAEEMAKHRAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIAY 769 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K ++P EFLAA+++ +MD+ +K++ F +D ++ ++PP VN F+ + Sbjct: 770 QTAWLKYYHPAEFLAATLSSDMDDTDKVQIFWKDCLANSVTVLPPDVNASAYRFEPVADE 829 Query: 835 ----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883 I Y L A+KG G I+ A P+ SL DFC RVD +NRR +E Sbjct: 830 FMAKGQPPRTIRYGLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSIE 889 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ AGA D +R LL ++ N + A+ + R+ ++FA + + K Sbjct: 890 ALIRAGAFDAIAENRAALLATVANAIEAAE--QAERSANQVSLFADNANDIVED-EVAKV 946 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + R E+ LGFYFSGH D ++ +R+ + A+ A ++ S Sbjct: 947 PAWDLQTRLRQEKAALGFYFSGHLFDAWRDEVRRFAPRPLARLEASRSLQ--WFAGVLSS 1004 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K TR+G + + + + + E F Sbjct: 1005 LRPKMTRRGK-MLYALLDDGSAQVEVAIF 1032 >gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568] gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568] Length = 1162 Score = 755 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 415/1051 (39%), Positives = 600/1051 (57%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L + EGYQ L L+SR Y Sbjct: 60 AGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+G G + + + E+ L +++ F D Y+ Sbjct: 110 GAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL +D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYTSQQYMRDEDEMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVLKSKEGLEDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 523 TDFAPLYCDAEGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILE 882 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942 L+ +GA D G R L+ SL + K A K ++F + + + Sbjct: 883 KLIMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYAN 942 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001 + V + E+ LG Y +GHP+ Y + + G + ++ T RG +V Sbjct: 943 VPLWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1003 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|282849948|ref|ZP_06259331.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC 17745] gi|282580385|gb|EFB85785.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC 17745] Length = 1135 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 364/1031 (35%), Positives = 598/1031 (58%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL T EGY+ L+++VS+ R Sbjct: 64 IGCEVYVTENSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++ +D +V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKDLKDLYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD+K +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ N+F + D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + T++ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ] gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ] Length = 1176 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 419/1063 (39%), Positives = 609/1063 (57%), Gaps = 58/1063 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL+VH+ +SL++G + + ++ +A PA+A+TD +N+ S ++F + A A G++P Sbjct: 4 SFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQS 128 I G + + + P + + LL A+GY+ L ELVSR + Q G Sbjct: 64 ICGADIWLASAE----------PDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGDGL 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 V I W++E EG+I L+G G I +A A L + +F +R Y+ +QR Sbjct: 114 VIIQRDWVKE-AAEGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEVQR 172 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D V+LA + PLVATN+ FL +ED+EAH+ + + + RPR Sbjct: 173 TGRVGDEEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRRPR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK +EM +FSDLPEALEN+VEIARRC+ +++ LP F I Sbjct: 233 NYSDQQYLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTI--- 289 Query: 307 EENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ LR A GLE + + Y +RL+FELN I +M F GYFLIV Sbjct: 290 -DDYLRQVAYEGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLIVM 348 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 349 DFIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFDVD 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI YV + YG V+QIITFGS+ AKA +RDV R Y DRL K+IP Sbjct: 409 FCMDGRDRVIDYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPF 468 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + +A + RE D + +++ KLEG+ R HA G+VI L+ Sbjct: 469 EVGMTLE-KAYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTD 527 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+ D VTQF+ +E AGL+KFDFLGL+TLT+++ +++ + + + Sbjct: 528 FAPIACDADGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGETEL 587 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D+ I DD TY LL T +FQLES GM++ ++ ++PD IED+IALV+L+RPGP+ Sbjct: 588 VDIDRIALDDKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPGPL 647 Query: 656 DNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + + + NRK+G+ ++ HP ++P+LK T G+I+YQEQVMQIAQ+++GY+L Sbjct: 648 QSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLG 707 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F+ G +KNGI +A NIF+L+ KFA YGFNKSH+AA Sbjct: 708 GADMLRRAMGKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHSAA 767 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y ++SYQTAW+KT YP F+AA ++ +M N +K+ ++ R ++I+ P VN F Sbjct: 768 YGLVSYQTAWLKTRYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEFMF 827 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D RI Y L AIKGVG I+E A PF L DFC+RVD K++N+R LE+L+ Sbjct: 828 TVDDEGRIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEALI 887 Query: 887 FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 GALD G +R LL +++ + A+ ++ + H ++F Sbjct: 888 RGGALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGGLF 947 Query: 932 GTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + + R + E+ LG Y +GHP+D Y+ +R+ + E Sbjct: 948 AEPEADVYANHRNARELSLKDRLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELRPA 1007 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++V+ + K +KG ++G++T + + EA+ F Sbjct: 1008 RELQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLF 1048 >gi|294794627|ref|ZP_06759763.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44] gi|294454957|gb|EFG23330.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44] Length = 1135 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 362/1031 (35%), Positives = 596/1031 (57%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + ++LL T EGY+ L+++VS+ R Sbjct: 64 IGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMADLFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +D +V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 LLT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD++ +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ ++F + I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMSLFGDMEEAVE-FIPVPNVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + T++ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37] Length = 1166 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 502/1058 (47%), Positives = 673/1058 (63%), Gaps = 49/1058 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGAL L + A PA+A+TDTNNLF+ALEFS A Sbjct: 1 MSD-PRFIHLRTHTEYSLLEGALRLKKLPGLCADMGMPAVAVTDTNNLFAALEFSVGASG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL T GY+ L++L S +YL Sbjct: 60 AGVQPIIGCQIDL----RYFEQAPGERIKPPAP-VVLLAQTERGYEHLMKLNSCLYLRRD 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L L E +E +I L+GG GP+ R NS A+ + +F DRLYV Sbjct: 115 -NELAHVTLDEL-EAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHAIFEDRLYV 172 Query: 185 NLQRHRGYD-------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G D E V++AY LPLVATN+ F YEAHD ++ +A Sbjct: 173 ELQRHPGEDGTPPEAEHLTERGFVEMAYEMGLPLVATNDVYFPKSSMYEAHDAMICIAEG 232 Query: 238 TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 Q+ R R+TP HYLK EM +F+DLPEALENTVEIA+RC+F+ Sbjct: 233 AYVDQQEPRRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAY--------RR 284 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E ELR A GL+ RLA I +DY++RLDFEL +I M F GY Sbjct: 285 DPILPRFADDEVTELRRMANEGLQARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFIQWAK +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP Sbjct: 343 FLIVADFIQWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVIRYVQ+KYGH+RV QIITFG+L +KAA+RD+GR LQMPY QVDRL Sbjct: 403 DFDIDFCMDRREEVIRYVQDKYGHDRVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLS 462 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS++ + D+ R E + VDRLL+ ++EGL R A THAAG+VI Sbjct: 463 KMIPVEGVKPVSIEQALRDEPRLAEEAKNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIA 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRP +LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G Sbjct: 523 DRPTDELVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRP 582 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + ++LIP DD TY L + T+ +FQ+ESSGM AL+ M+P Sbjct: 583 LHVAADGTQLYEPPEGAENQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKP 642 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI VY KNG +I S+HP ID +L ETQG+I+YQEQVMQ Sbjct: 643 TCIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQ 702 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ+++GYSL AD+LRRAMGKKIKE MD ++ +F GA+KNG+ K A +F+LL KFA Sbjct: 703 IAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFA 762 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816 +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R+ + Sbjct: 763 NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPW 822 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN F V + ++ Y+L A+K VG + ++E + F ++ DF RVD KK Sbjct: 823 VPPCVNRSLATFDVVEGQLVYALGALKNVGLEAMKLVVEGRDGRAFSTVFDFARRVDLKK 882 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE + AG D +R ++ SLD + Y+ + + + + ++F E G Sbjct: 883 IGKRPLEMMARAGCFDVLDPNRRRIFDSLDALVAYSAAIHEQKGSAQVSLFG-EAGDDLP 941 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994 + L S + R E + +GFY SGHPLD Y P L++ + +E +A Sbjct: 942 EPRLSPVSDWLPAERLAEEFKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLV 1001 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA +V +Q++K+ +G+R + S+P YE F Sbjct: 1002 AKLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1039 >gi|256372403|ref|YP_003110227.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008987|gb|ACU54554.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 1189 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 381/1073 (35%), Positives = 572/1073 (53%), Gaps = 59/1073 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA +N++L AAD QPA+AITD NL+ ALEF + A G++P Sbjct: 3 SFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPT----------VPSIVLLVSTAEGYQRLIELVSRM 119 IIG + + + + T + LL GY LI+L SR Sbjct: 63 IIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRA 122 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L + RI L+E EGLI LTG G + + + A T +++ G Sbjct: 123 FL-EGYYYKPRIDFELLEE-HREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILG 180 Query: 180 -DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++V LQ H ++ R Q+++LA L VATN+S + ED+E HD L+ V Sbjct: 181 PDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTG 240 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 ++ ++R R +HYLK+ EM F ++PEA + T++IA RCS L P LP Sbjct: 241 ATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEID 300 Query: 297 EKECDDIQKEEE---NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 +E L G R +R+ +EL+VI M F Sbjct: 301 IPVRITGATYDERAGEYLAELVWQGARARYGNDLDETTS------ERIRYELSVIESMGF 354 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+V D I+ A++ +I VGPGRGS AGSV AY L IT IDPL + L+FERFLNP R Sbjct: 355 PGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGRK 414 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 MPD D+DF + R E+IRY +YGH+ VAQI+TF +++A+AA+RD R L PY+ D Sbjct: 415 QMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVGD 474 Query: 474 RLCKLIPN-DPAHPVS-----------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 ++ K +P A + RE +DP V R++++++ LEGL Sbjct: 475 KIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEGL 534 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL------PVTQFNMKWIEKAGLIKFDFLG 575 R HAA +VI PL++ +P+ R VTQF M +E+ GL+K DFLG Sbjct: 535 RRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFLG 594 Query: 576 LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+TL+++ ++++ + RGV +D+ I DD T+ +L +G+FQLE MRQ + Sbjct: 595 LRTLSVIDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMRQLMRQ 654 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 + P ED+ ALV+LYRPGP+ + Y +RKNG++ + +HP ++P+L++T G++IYQ Sbjct: 655 LAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYGLMIYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 E +M++AQ ++GYSL EAD LR+A GKKI+ + ++E+FI+G +G + +F++ Sbjct: 715 ESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGTALFDI 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FADY FNKSHA Y ++SYQTA++K ++PV+FLAA +T D+ +K+ + DA Sbjct: 775 IEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLADAAAH 834 Query: 813 NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867 +I ++ P VN VDF V +I + LAA++ VG R I++ PF S D Sbjct: 835 HIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPFTSFAD 894 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F RVD+ LNRR LESL+ AGA D FG+ R L ++L+ + + R ++F Sbjct: 895 FLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRGLGSLF 954 Query: 928 AHEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKG 982 S L ++ E+ +LG Y S HP+ + ++G + Sbjct: 955 EEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGV--NVDRLGRDVTP 1012 Query: 983 YEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T G + + + + Q+ TRKG + + + E FP Sbjct: 1013 ILDLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVFP 1065 >gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp. multocida str. Pm70] gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70] Length = 1159 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 595/1048 (56%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S++ G + ++ + A+ +TD N + F +A + Sbjct: 1 MSE-PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + + + + + LL GY + L+S+ Y Sbjct: 60 AGVKPIIGADVLV----------RSELCGDEPFELTLLAKNNIGYHNITLLLSKAY-ERG 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E EG+I+L+GG +G + + + E + ++ F D Y+ Sbjct: 109 YQDLPYLDQAWLAE-HREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYL 167 Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R Y+ R + + LA LP+VATN+ LFL E+D+EAH++ +A+ S + Sbjct: 168 SLSRTGRYEEERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ EM +F+D+P ALENT+ IA+RC+ +++ + Sbjct: 228 KRPKLYTNQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYF-----LPQFPT 282 Query: 303 IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSKEGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 403 VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + + +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFAAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 522 TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKP 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD++ IP DD ++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 582 PVDIATIPLDDPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N H + P+L+ T GVI+YQEQVMQIAQ L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA + G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT EMDN +KI + + +++ PP +NT Sbjct: 762 AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHH 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y + AIKGVG ++ A F L D C+RVD KK+NRR ESL Sbjct: 822 FSVNEYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L ++L++ K + K+ ++F + D + Sbjct: 882 ILSGAFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + V E E+ LG Y S HP+ Y L ++ V RG ++ ++VS Sbjct: 942 RWSEKVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T+KG+R+G T + + + F Sbjct: 1002 RFAVTKKGNRLGIATLDDRSGRLDITLF 1029 >gi|256832318|ref|YP_003161045.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603] gi|256685849|gb|ACV08742.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603] Length = 1181 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 372/1067 (34%), Positives = 558/1067 (52%), Gaps = 50/1067 (4%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S FVHL VH+ YS+L+GA L+++ + A Q IA TD +F A EF KA Sbjct: 1 MASSNADFVHLHVHTEYSMLDGAARLDDLFQETARLGQHTIATTDHGYIFGAYEFWSKAR 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 AAG++PIIG + + + L EG L Sbjct: 61 AAGVKPIIGVEAYLTPGTSRFDQTRRLWGEQSQREDDVSARGAYTHFTLWARNNEGLHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 + S L Q + R+ LQ +EGLI +G S + A + Sbjct: 121 FRMSSLASLEGQMGKWPRMDRELLQTY-SEGLIASSGCPSSEVQTRLRLGQFDEALRAAG 179 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 +++FG + YV L H + S+++++A PLVATN+S ++ +D + + Sbjct: 180 EMQEIFGKENFYVELMDHGLSIENRVRSELLEVARKINAPLVATNDSHYVRRDDAASQEA 239 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHA 289 L+ + + + DR + D Y ++ + + D+PEA +NT+ IA +C A Sbjct: 240 LLCINSGSTLLDPDRFKFDGDGYYIKSAQEMRDLWRDIPEACDNTLLIAEQCDVSFNTSA 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P+F +D E + + GL R QG D R + FE+NVI Sbjct: 300 NYMPKFPCPPGED----ETSWFIKEVERGLHARYPQG------IPDDVRAQAKFEINVIT 349 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLN Sbjct: 350 QMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLKHGLIFERFLN 409 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF + RR EVIRYV KYG +RVAQI+T+G+++AK AL+D R L P+ Sbjct: 410 PDRVSMPDFDVDFDERRRGEVIRYVSEKYGEDRVAQIVTYGTIKAKQALKDSSRLLGFPF 469 Query: 470 SQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520 + ++L K +P +S + + FR+ DP R++E+++ +EG Sbjct: 470 AMGEKLTKAMPPAIMGKDISLTGIFDPQDKRYHEAEEFRQLHAGDPDAQRVVELAKGIEG 529 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT Sbjct: 530 LKRQWGVHAAGVIMSSDPLIDIIPIMRRPQDGAVITQFDYPTCETLGLIKMDFLGLRNLT 589 Query: 581 LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L +LD + Q + L + DD +TY LL TLG+FQL+ +GMR L M+PD Sbjct: 590 ILDDALDNIVQNNKEPVILEDLLLDDRKTYELLARGETLGVFQLDGNGMRSLLRLMRPDN 649 Query: 640 IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693 EDI A+ +LYRPGP+ ++ Y RKNG++ + IHP ++ L T G+I+YQE Sbjct: 650 FEDISAVGALYRPGPMGANSHTNYALRKNGQQAVTPIHPELEEPLAEILGNTYGLIVYQE 709 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM IAQ L+GYSL +AD+LRRAMGKK K E+DKQ E F G G S ++++L Sbjct: 710 QVMAIAQKLAGYSLGQADILRRAMGKKKKSELDKQFEMFSQGMIDRGYSMQAVKTLWDIL 769 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 770 VPFSDYAFNKAHSAAYGVVSYWTAYLKANYPTEYMAALLTSVKDDKDKSALYLNECRRMG 829 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 I ++PP VN+ +F D I + L A++ VG I+ D F S DF +V Sbjct: 830 ITVLPPDVNSSLANFAAVDRDIRFGLTAVRNVGGNVVDAIIATREDKGEFSSFTDFLDKV 889 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + N+R +ESL+ AGA D G+ R L + V++ ++FA Sbjct: 890 PAVVCNKRTIESLIKAGAFDSLGHPRKALHIIHEQAVDSVISVKRKEAEGQFDLFAEFGS 949 Query: 933 TFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + + + + E+ +LG Y S HPL + +L + + +A Sbjct: 950 EPEEGMSFSVDVPMLDDWDKKQLLAFEREMLGLYVSDHPLSGIEHVLTQASDLAIAKLLA 1009 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + +A +V + Q+K +++G+ T + + FF Sbjct: 1010 DEGRPDGSTVTIAGLVTTVQRKMSKQGNPWASATVEDLDGSIDVMFF 1056 >gi|15606309|ref|NP_213688.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5] gi|6014991|sp|O67125|DPO3A_AQUAE RecName: Full=DNA polymerase III subunit alpha gi|2983510|gb|AAC07087.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5] Length = 1161 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 391/1067 (36%), Positives = 595/1067 (55%), Gaps = 68/1067 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL +H+ +SLL+GA+ ++ ++ K A+ ++D NLF + +F + A Sbjct: 1 MSK--DFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 GI+PIIG + + ++L+ +G + L++L + Y Sbjct: 59 EGIKPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAY- 117 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI L++ G EGLI LT G N + AE+ + FK +FGD Sbjct: 118 KEGFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDD 176 Query: 182 LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LY+ LQ + ++ ++++A +++ L+AT ++ +L+ ED AH VLMA+ + Sbjct: 177 LYLELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTI 236 Query: 241 SQ---KDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQVHAPILP 293 + + D + M F +AL NT+E+ + + ++ Sbjct: 237 HELSSGNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTY 296 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + K K E LR A GL R+ +G + ++Y +RL++EL VI +M F Sbjct: 297 -LLPKYDVPPDKTLEEYLRELAYKGLRQRIERG---QAKDTKEYWERLEYELEVINKMGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 +GYFLIV DFI WAKKN+IPVGPGRGS GS+ AYA+ ITD+DP++ LFERFLNP+R+ Sbjct: 353 AGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DFCQD R++VI YV+NKYGH+ VAQIIT+ ++AK LRDV RA+ +PYS D Sbjct: 413 SMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTAD 472 Query: 474 RLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRL 511 +L KLIP +SL+ + +FR+ P + +L Sbjct: 473 KLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQL 532 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 +E + KLEGL RH S HAAG+VI +PLS+LVP+Y D + TQ++M +E+ GL+K Sbjct: 533 VETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYD-KEGEVATQYDMVQLEELGLLKM 591 Query: 572 DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLT L+ + + +R V ++ +P DD + Y LL T G+FQLES GM++ Sbjct: 592 DFLGLKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLESRGMKE 651 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 L+ ++PD +DI+A+++LYRPGP+ + + Y RK+GKE + P ++P+LKET GV Sbjct: 652 LLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLKETYGV 711 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM+++Q+LSG++ EAD LR+A+GKK + M + K++FI GA + G + Sbjct: 712 IVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPEEKIRK 771 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++E + KFA Y FNKSH+ AY ISY TA++K HYP EF A +T E ++ + + +D Sbjct: 772 LWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKNDNKFL-NLIKD 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866 A+ F +I+PP +N V F + +NRI + LA IKGVG TA+ I+EA K F L Sbjct: 831 AKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQFKGLA 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF ++ ++K+N++V+E+LV AGA D R +LL + N EK ++ Sbjct: 891 DFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEKALMATQNSL 943 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 F + K +E+ + E+ VLGFY SGHPLD Y+ +L+ E+ Sbjct: 944 FG------APKEEVEELDP------LKLEKEVLGFYISGHPLDNYEKLLKN-RYTPIEDL 990 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + L ++ + KKT+ G + + E FP Sbjct: 991 EEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFP 1037 >gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4] gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4] Length = 1177 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 603/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKTGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I A + + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ F++E+D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y + + +MV++F+D+P A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTAQYFRTQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ LL T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQLLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVTNNLVVLPPDINQSHYRFEPVAQAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC RVD + +NRR +E+L+ A Sbjct: 826 GTRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R Q+L S+ + +F + L + Sbjct: 886 GAFDSLNPNRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022 >gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815] gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815] Length = 1187 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 402/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + +++++D A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ +L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVRNKTGYLNLCELLSKAWLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + +WL+ EGL+ L+G G + A + + A++ + ++F + Sbjct: 111 NQYRGRAEVETAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGF 170 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRGGQAGAEAYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T D Y + + EM+++++D+P A+ NTVEIA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTTDQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE RL Q + + Y RLDFE I +M F GYF Sbjct: 291 MSL----DDYLVQLSKEGLEKRLEQLFPEQAERDAQREGYYARLDFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD + +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 ENWSLAQVPLDDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGRETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA++NG+++ A F+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAKHREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ Sbjct: 767 YHTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAE 826 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A + PF + DFC+R+D + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A N +F S L Sbjct: 887 RAGAFDSLHENRAQLIASVSLAMEAADQASANAM--QAGLF-DIGDAPSQGHELVDEPAW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R + E+ LGFY SGH D YK +R+ + E +A ++VS + Sbjct: 944 PDKRRLQEEKTALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895] Length = 1144 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 420/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G + Sbjct: 1 MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +G + + +L + GYQ L L+S+ Y G + I WL E+ Sbjct: 57 ------RGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLTEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 +GLI+L+GG G + R+ +S + ++ + +++ F DR Y+ L R D Sbjct: 110 DGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA T LP+VATN+ F++ ED++AH++ +A+ + RPR +P Y+++ E Sbjct: 170 VELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDFLVKKSKEGL 284 Query: 320 EVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + + Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K D++ IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA D F L D C+R D+KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|88857962|ref|ZP_01132604.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2] gi|88819579|gb|EAR29392.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2] Length = 1163 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 413/1054 (39%), Positives = 598/1054 (56%), Gaps = 43/1054 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + PSFVHL+VHS +S+++G I+ K A PA+AI+D NL + F Sbjct: 1 MPQ-PSFVHLRVHSDFSMVDGLAKTKKIVAKAAEYAMPALAISDQMNLCGLVRFYDGCHY 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+ + + D + + ++ +GY+ L L+S+ YL Sbjct: 60 AGIKPIVAADIWLLSPD----------FPDEMCRLTVIAKNNQGYKNLTLLISKAYLRGH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + WL E+ EGLI+L+G G + +A + + + +++ F D ++ Sbjct: 110 VMHRPMVDRDWLVEL-KEGLILLSGAKDGDLGKALLKGNPSLIDSVSGFYQREFADHYFL 168 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + V +Y +P+VATN +FL +ED+E H++ +A+ + Sbjct: 169 ELVRTERPQEEEYLHLAVAHSYQTGIPVVATNEVVFLHKEDFEPHEIRVAIHDGYTLDDN 228 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP R + Y K ++M +FSD+PEAL N+VEIA+RC+ +Q+ + + Sbjct: 229 RRPKRYSEQQYFKTEAQMCEVFSDIPEALANSVEIAKRCNVTIQLGT-----YFLPDYPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L + GLE RL + + ++Y +RL EL+VI +M F GYFLI Sbjct: 284 GKLTIEDFLVKVSEDGLEERLQILFPDPVKRVEQRKEYDERLKIELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VD++ KLI Sbjct: 404 IDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDKISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + R E D V L++ + LEG R+A HA G+VI + Sbjct: 464 PGDPGMTL-AKAFEVEPRLPEIYDTDDEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + +Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ ++ R Sbjct: 523 TDFAAIYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVQMANTRLAREGKE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++LIP DD +++ LL T +FQLES GM+ + ++PDC ED+IALV+L+RPGP Sbjct: 583 SIDITLIPLDDPKSFELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREEVSYPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F SGA N + +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSTFESGAIGNNVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI + + ++PP VN Sbjct: 763 AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNFGEYK 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA PF L DFC+RVD K++NRRV E L Sbjct: 823 FTVNLDGAIVYGIGAIKGVGEAPVDAILEARQSGGPFRDLFDFCARVDLKRVNRRVAEKL 882 Query: 886 VFAGALDCFGY-----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939 + AGALD G +R L+ +L + K A+ K ++F +D + Sbjct: 883 IMAGALDNLGPKKVQGARSILIATLKDAMKSAEQHHKAAAIGQSDLFGLLAEESNDVEHV 942 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + + E+ LG Y +GHP++ Y+ L+ + T R + +A Sbjct: 943 FVSAPFFTDNEWLDGERETLGLYLTGHPINQYRKELKHYTAGRLVDVQPTERDVSATVAG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+S + +KG R G +T + + + FFP Sbjct: 1003 LVISTRVLVNKKGKRWGLITLDDKSARMDVRFFP 1036 >gi|225875019|ref|YP_002756478.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225792178|gb|ACO32268.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1173 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 415/1058 (39%), Positives = 605/1058 (57%), Gaps = 48/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + ++ +A+ Q ++AITD N++ A+ F + A GI+PI Sbjct: 4 FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L I +++ + QG +++L + EGY+ L+ + S L + R Sbjct: 64 LGCELYICQKEDHRADPQG----DDYNHLLVLAESEEGYRNLVRITSEASLHG-FYRKPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 I +L E GLI +G +G + ++ Q A ++ +FG ++ +Q Sbjct: 119 ISKKYLAE-HAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQ 177 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247 ++ + + +L ++PLVATN+S +L E+D+ AHDVL+ V ++ K Sbjct: 178 GLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKF 237 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + Y+K+ +EM +F PE + T++ A RC+ L P F Sbjct: 238 DSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPG----HTI 293 Query: 308 ENELRNKAVAGLEVR------LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ + G + R Q DY RL+ E+ +I +MKFSGYFLIV Sbjct: 294 DSYFEHVCREGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVW 353 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI++AK ++IPVGPGRGS AGS+ Y + ITDIDPL+ LLFERFLNP+R+SMPD DID Sbjct: 354 DFIRYAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDID 413 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR EVI YV KYG E+VAQIITF ++ AKAA++DVGRAL MPY VDR+ K+IP Sbjct: 414 FCMNRRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPA 473 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + D + +EA + + L++ +++LEGL R A HAAG+VI RPL+ Sbjct: 474 TIGVTIDQA-LTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTD 532 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600 LVP+ R ++D VT ++MK +EK GL+K DFLGL TLT++ L + + RG VD++ Sbjct: 533 LVPLSR-SKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGETVDMAK 591 Query: 601 IPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657 +P DD ETY + T G+FQ ES GMR L +P C+ED+ AL +LYRPGPI Sbjct: 592 VPLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGM 651 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK G+ K+ P ++ +LKET GVI+YQEQVMQIA +L+GYSL EAD+LRRAM Sbjct: 652 IDDFIERKWGRRKVEYELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLRRAM 711 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM KQ++RF+SGA + K V IF+L+ +FA YGFNKSH+AAYA+++Y TA Sbjct: 712 GKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAYHTA 771 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 W+KTHYPVEF+AA +T E+ E + K+ Q+ R+ I + PP V DF I + Sbjct: 772 WLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKSIRF 831 Query: 838 SLAAIKGVGTTTARHIMEAS-----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 L AIK VG I++A K F + +FC +VD + +N+RV+ESL+ AGALD Sbjct: 832 GLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAGALD 891 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENS 948 FG R QL+ S+D + AQ +++ +F + S L Sbjct: 892 SFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPDWEE 950 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT-------IRGN----NIR 996 ++R ++E+ VLGF+ SGHPLD Y LR + GI ++ RG I Sbjct: 951 ALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNENEIA 1010 Query: 997 LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 +A M+V + K+++ G + + + + FP Sbjct: 1011 IAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFP 1048 >gi|309389826|gb|ADO77706.1| DNA polymerase III, alpha subunit [Halanaerobium praevalens DSM 2228] Length = 1118 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 364/1038 (35%), Positives = 593/1038 (57%), Gaps = 38/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL H+++SLL+GA ++++++K + PA AITD L+ ++F +KA Sbjct: 1 MSN---FVHLHNHTAFSLLDGATRIDSLIEKTKKYEMPAAAITDHGVLYGMIDFYRKAKK 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + + + ++LL +GY LI+LVS+ +L + Sbjct: 58 EGIKPIIGAELYLASGSRFEKNRK-------RYHLLLLAQNKQGYYNLIQLVSKAWL-EG 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L + ++GLI L+ G I + +A+K ++ +FG + + Sbjct: 110 FYYKPRVDKELLAKY-SDGLICLSACLQGEIPQLLIKGQYDLAQKAAADYRAIFGKNNFF 168 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ +++L+ +P V TN+S +L++ED E D+L+A+ T ++ Sbjct: 169 LELQDHNLQKEKEVAQGLLKLSQAENIPTVITNDSHYLNQEDAELQDILLALQTGTTLAD 228 Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R T + Y K+ EM +F +L A +NTV+IA R L + LP++ + Sbjct: 229 ENRMTFTGQEFYYKSPKEMKKLFPELNSAYQNTVKIADRVELNLDFNHFYLPKYPD---L 285 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 +K E L+ GL+ + R+RL +ELN+I M ++ YFLIV Sbjct: 286 GKEKSAEELLQKLCFEGLKAKEMDSDAKA-------RKRLKYELNIIFEMGYAAYFLIVY 338 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A+ N I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DID Sbjct: 339 DFVKYAEDNGIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDID 398 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F + RD++I YV+ +YG ERVAQI TFG++ A+AA+RDVGR L +PY +VD++ KLI + Sbjct: 399 F-DENRDQIIEYVKKRYGKERVAQIGTFGTMAARAAIRDVGRVLALPYKKVDQVAKLISS 457 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 S + + ++ D + L++ ++ +EGL RH STHAAG++IG PL+Q Sbjct: 458 RKGIKAS---LKSQEKLQQLYQRDSQIKELIDYARGVEGLPRHISTHAAGVIIGAEPLAQ 514 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 +VP+ + + +TQ M +E GL+K DFLGL+ LT+++ L + + K+D+ Sbjct: 515 IVPLQK--QDQSVITQLPMGDLEALGLLKMDFLGLRNLTVIKNCLQLIEKHKGKKIDIDN 572 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658 IP D + Y L+T T G+FQ+ES + + M+P+ D+IA+++L RPGP+ + + Sbjct: 573 IPLTDKDVYDFLSTGKTAGVFQMESYLFQSLNKKMKPEKFNDLIAMLALGRPGPLGSNIV 632 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + ++GK++ +HP + P+L+ET G+I+YQEQVM+IA L+GYS+ EAD+LRR MG Sbjct: 633 DDFIAIRHGKKEAEYLHPKLKPILEETFGMILYQEQVMEIASSLAGYSMGEADLLRRGMG 692 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + + ++E+F+ GA GI + IA IF+ + FA YGFNKSH+ AYA ++YQTA+ Sbjct: 693 KKKLKLVAAEREKFVKGAVARGIQENIAQKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAY 752 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837 +K HYP EF+AA + M N +KI + + ++I+PP +N +F DN I Y Sbjct: 753 LKYHYPAEFMAALFSSVMGNQDKIADYINSLAEIGLKIIPPDINRSDHNFTAANDNEILY 812 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIK VG+ +++A + F SL DF RVD ++N + LE+ V AGA D + Sbjct: 813 GLKAIKNVGSAAIEAVIKARKSEKFKSLVDFLKRVDISQINIQSLEAFVKAGAFDEIAVN 872 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R LL + + + + KNR ++ +F + + +K + E Sbjct: 873 RASLLLNYEELYNKYNNLAKNRAQGQQSFAELFEDQNKFMQTDLKYQKVDELKTETILEQ 932 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y S HPLD Y+ L K+ +++ G + AA + + ++ T++ ++ Sbjct: 933 EKEFLGIYISAHPLDQYQAKLDKINFYSINKALTVDSGKKVLTAAYLSNYKEHITKRKNK 992 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + ++T S+ + E F Sbjct: 993 MAFLTVSDHQDKMEVIVF 1010 >gi|306821145|ref|ZP_07454761.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550838|gb|EFM38813.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1147 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 366/1055 (34%), Positives = 596/1055 (56%), Gaps = 43/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + + F HL +H+ YSLL+G ++ ++ K + +IAITD +F ++F + Sbjct: 1 MVESITSEKKFTHLHLHTQYSLLDGFTVIDKVMKKASDLGMDSIAITDHGVMFGVVDFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A I+PIIGC+L + + N K I+LL EGY+ LI+LVS + Sbjct: 61 AAKKYNIKPIIGCELYTAARTHKDKENIDKKSG----HIILLAKDDEGYRNLIKLVSIGF 116 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 +D R+ L++ ++GL+ L+ +G + + + A K L+ ++++G Sbjct: 117 -VDGFYYKPRVDYELLKKY-SKGLVCLSACLAGDVQQQILAGDYEKACKTALSLEEIYGK 174 Query: 180 DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ +Q H ++ + +++ +PLV TN+ ++ ++D ++H+VL+ + Sbjct: 175 GNFYLEMQNHNIPEQKKVNIYLRKMSKDTGIPLVVTNDVHYVDKQDNKSHEVLLCIQTGK 234 Query: 239 VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ + + T + Y K++ EM +F EAL NT +IA C+ + LP + Sbjct: 235 TLADEQKMEFLTNEFYFKSQDEMYELFEGDEEALYNTQKIAEMCNLEFDFDSYHLPNYEV 294 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E L+ GL+ + RQRLDFEL VI +M + YF Sbjct: 295 PE----NYTAYEYLKKLCNDGLKK--------YDKVTDEIRQRLDFELEVINQMGYVAYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI +AKKNNI VGPGRGS AGS+ +Y L ITDIDPL+F+LLFERFLNP R+SMPD Sbjct: 343 LIVHDFIDFAKKNNIAVGPGRGSAAGSIVSYLLNITDIDPLKFNLLFERFLNPQRVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF D+RD VI YV+ KYG + V+QIITFG+ +A+ A+RD R + + Y D++ K Sbjct: 403 IDIDFASDKRDMVIEYVKEKYGKDHVSQIITFGTFKARLAIRDCARVMGISYFIADKVAK 462 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + A+ + ++ D +V +L+++++ +EG+ RHASTHAAG+VI Sbjct: 463 MIPLMLGVTIE-SALNINHELKKLYDEDDTVKKLIDMAKTIEGMPRHASTHAAGVVISKN 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 + VP+Y V+ D V QF M +E+ GL+K DFLGL TLT++Q+++D + + R + + Sbjct: 522 SVDSYVPLY--VQDDNIVAQFTMTTLEELGLLKMDFLGLGTLTIIQRTIDNIKKNRNISL 579 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L I +DD + Y + T TLG+FQ+ESSGMR+ ++ ++P+ +ED+ A +SLYRPGP+D Sbjct: 580 KLDEIDYDDKKVYEHIATGKTLGMFQIESSGMRKFMKELKPENLEDLTAGISLYRPGPMD 639 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +I Y K ++ I IH + P+L T+G++IYQEQVMQI + L+GYS AD++RRA Sbjct: 640 SIGDYIKNKEDEKNIKYIHEKLIPILSVTKGIMIYQEQVMQIVRDLAGYSYGSADLVRRA 699 Query: 717 MGKKIKEEMDKQKERFISGA--------SKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M KK + M++++++F+ G KNGI + A IF+ + FA+YGFNKSHAAA Sbjct: 700 MSKKKMDVMEQERQKFVYGMESENIAGCVKNGIDEKTANKIFDYMIDFANYGFNKSHAAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+VISYQTA++KT+YPVEF+A+ M++ + N +K+ ++ D ++ I+++ P VN DF Sbjct: 760 YSVISYQTAYLKTYYPVEFMASLMSMAIGNTDKVMEYKMDCQEMGIEVLAPDVNHSFSDF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + D++I + L+A+KGVG A +I E + + S ED R+DS+ +N++V E+L+ Sbjct: 820 SIEDDKIRFPLSALKGVGFAVASNIAEERGRNGRYISFEDLVERLDSRDINKKVAEALIK 879 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +G+LD +R + + + I + +KN + F + Sbjct: 880 SGSLDSIIVNRASAMSNYERIIEGIHSTKKNMVQGQISFFNASISQGYKVGIAPDIKEFS 939 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---------NNIRLA 998 + E+ +LGFY SG+PL+ Y+ ++++ +++ Sbjct: 940 HEILLNMEKEILGFYISGNPLEKYQDLIKQRTNMTTTAIKEINEENTSQKVIETTKVKII 999 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 M+ + T+K + + ++T + E FP Sbjct: 1000 GMISKMKISTTKKNAMMAFITIEDLYSSVEVIVFP 1034 >gi|154174535|ref|YP_001407866.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92] gi|112803372|gb|EAU00716.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92] Length = 1201 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 368/1060 (34%), Positives = 588/1060 (55%), Gaps = 47/1060 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL +H+ YSLL+GA + + + + AITD N+F A++F + GI+ Sbjct: 2 SDFTHLHLHTEYSLLDGANKIKELAHVLHERGDTSAAITDHGNMFGAIDFYKTMKKEGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P+IG + I D+L G ++L+ GY+ L+ L S Y+ + Sbjct: 62 PLIGIEAYIHNADDL-----GDKSSKQRFHLILIAKNETGYKNLMYLSSMSYI-EGFYYY 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179 RI L+E +EG+I + G + + A++ L +K++FG Sbjct: 116 PRINKKILKE-HSEGIICSSACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFG 174 Query: 180 DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH D+ R ++++A + ++ATN++ + +E +AH+V M +A + Sbjct: 175 DDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERADAHEVFMCIAMNK 234 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295 ++ +R R + + ++K+ EM +F D+PE +ENT EI ++C+ +++ P P F Sbjct: 235 LLDDPNRLRHSVHEFFVKSEDEMKRLFLDIPEVIENTKEIVQKCNLEIKLGNPTPPNFKF 294 Query: 296 ------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 E + K + + GLE RL ++Y++RL+ Sbjct: 295 TLECAAERGLNLPEPKNRYSFKNDTVFFEYECKKGLEERLK---FVPENLHEEYKKRLER 351 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ +I +M FSGY +IV DFI AK +PVGPGRGS AGS+ AY+L ITD+DP+ ++LL Sbjct: 352 EIEIINKMNFSGYMMIVWDFINEAKSRGVPVGPGRGSAAGSLVAYSLKITDLDPIPYNLL 411 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DFCQ RR E+I YV KYG VA +ITFG L AK +RDV R Sbjct: 412 FERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKYNVAGVITFGKLLAKGVIRDVAR 471 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 MPY++ D + KLIP++ + A + + +E +P ++ + + LEGL R Sbjct: 472 VCDMPYAEADAMAKLIPDELGITLK-DAFEKEPKIKELIDKNPKAAKIWKFALDLEGLNR 530 Query: 524 HASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 +A HAAG+VI + L P+ + D VTQ+++K++E LIKFDFLGLKTLT+ Sbjct: 531 NAGQHAAGVVISNEELWHKTPLFRQPNSPEDRYVTQYSLKYLEDVDLIKFDFLGLKTLTV 590 Query: 582 LQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ + +R K + I +D Y ++ + +GIFQ+E GMR+ ++PDC Sbjct: 591 IDNAIKLVKRRTGKDVIWEQIDKNDKPVYDMIQSGQAIGIFQIEGEGMRKLGTSLRPDCF 650 Query: 641 EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDI+A+++LYRPGP+++ + + RK+G+ I ++P+L T GVI+YQEQVMQI Sbjct: 651 EDIVAMLALYRPGPMESGMLDDFVKRKHGEAAITYAFKELEPILAPTYGVIVYQEQVMQI 710 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q + G+SL AD++RRAMGKK E + +QKE F+ GA K G + + ++F+L+ KFA Sbjct: 711 VQKIGGFSLGGADLVRRAMGKKDPELLRQQKELFVEGAKKEGFNVQKSGDLFDLILKFAG 770 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E NV+KI ++ ++++ I ++ Sbjct: 771 YGFNKSHSAAYAYVTFQTAFLKAYYPAEFMAALLTSEESNVDKIVRYIDESKRLKIDVLA 830 Query: 819 PSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 PS+N +F V DN I + L AIKGVG +I+ F D SR+D Sbjct: 831 PSINKSMKEFSVVDNGGHDGIIFGLGAIKGVGGAAIENIIAERERGGEFKDFNDLVSRID 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + K+N++V ESL+ AG D FG++R LL +++NI + + + R N +++F ++ Sbjct: 891 AFKVNKKVFESLIKAGCFDEFGHTRKMLLANIENIIEACKNAAQIRKNAAQSLFGEDESM 950 Query: 934 FSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 KI + + + EQ +G Y SGHPLD Y+ + ++ E + Sbjct: 951 NDVKINFDPVDGEYDIKQILKFEQESVGIYLSGHPLDDYREKISQIKYTLSSEFENLPQS 1010 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + + T+ G ++G + + E F Sbjct: 1011 AEILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAIF 1050 >gi|117928262|ref|YP_872813.1| DNA polymerase III subunit alpha [Acidothermus cellulolyticus 11B] gi|117648725|gb|ABK52827.1| DNA polymerase III, alpha subunit [Acidothermus cellulolyticus 11B] Length = 1190 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 376/1057 (35%), Positives = 563/1057 (53%), Gaps = 45/1057 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA + ++L + A PAIA+TD N++ A +F ++A A GI P Sbjct: 24 SFVHLHVHTEYSMLDGAARIKDLLAETVAMGAPAIAMTDHGNVYGAYDFYKQARACGINP 83 Query: 70 IIGCQLDIDMQDNLKMT--------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 IIG + + + I LL +G L L S L Sbjct: 84 IIGMEGYLAPGSRFDRRRVSLATAGPGDENAGEMYTHITLLAENTDGMHNLFRLSSLASL 143 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 + R+ L +G+I TG S ++R A + ++ +FG + Sbjct: 144 -EGFYYKPRMDRELLATY-AKGIIATTGCPSSEVNRLLQQGKYAAARQAAAEYRDIFGAE 201 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y L H +R +++LA LPL+ATN+ + +D+EAH+VL+ V Sbjct: 202 NFYCELMDHGLEIERRVRDDLLRLARELRLPLLATNDLHYTYAQDWEAHEVLLCVQTGKT 261 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ +R + + YLK ++M +F DLPEA +NT+ IA R A ++PRF Sbjct: 262 LADPNRFKFDAKEFYLKTPAQMRELFRDLPEACDNTLAIAERVHVEFAEGANLMPRFPVP 321 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + EE+ L + AGL R G YR+R ++EL VI +M F GYFL Sbjct: 322 PGE----TEESWLVKEVEAGLHRRFPSGV------PDAYRERAEYELTVICQMGFPGYFL 371 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +VAD +++AK+N I VGPGRGS AGS+ AYAL IT++DP++ LLFERFLNP+R+SMPD Sbjct: 372 VVADLVRYAKENGIRVGPGRGSAAGSMVAYALGITELDPIKHKLLFERFLNPERVSMPDI 431 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF + RR ++IRY KY + VAQIIT+G+++AK A++D R L PY+ DR+ KL Sbjct: 432 DIDFDERRRGDMIRYATQKYREDHVAQIITYGTIKAKQAIKDSARVLGYPYAISDRITKL 491 Query: 479 IPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +P + S A+ + FR DP V ++++ ++ LEGL R HA Sbjct: 492 MPPALMGRDLSLAAIFDPSHPRYAEAAEFRAVYENDPDVRKIVDTARNLEGLKRQWGVHA 551 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DF 588 AG+++ PL ++P+ R + +TQF+M E GL+K DFLGL+ LT+L L Sbjct: 552 AGVILSREPLLDVIPIQRREQDGAIITQFDMGACEALGLLKMDFLGLRNLTVLDDCLAGI 611 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 A RG+ + L +P DD TY LL TLG+FQL+ MR L M+PD EDI A+++ Sbjct: 612 KANRGIDLVLEEVPLDDPATYELLQRGETLGVFQLDGGPMRALLRSMRPDNFEDISAVLA 671 Query: 649 LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQLL 702 LYRPGP+ + + Y +RKNG++ + IHP + L +T GVI+YQEQV+ IAQ + Sbjct: 672 LYRPGPMGANAHIEYADRKNGRKPVEPIHPELAEPLADILDDTYGVIVYQEQVIAIAQRV 731 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL +AD+LRRAMGKK KE +DK+ F G KNG S+ ++E+L F+DY FN Sbjct: 732 AGYSLGQADLLRRAMGKKKKEILDKEYIPFSEGMRKNGYSEDAIRTLWEILVPFSDYAFN 791 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 K+H A Y ++SY TA++K +YP E++AA +T D+ EK + + R+ I+++PP VN Sbjct: 792 KAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKEKSALYLHECRRMGIRVLPPDVN 851 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRV 881 +F + I + L+A++ VG I+E + F DF ++V+ N++V Sbjct: 852 ESDTNFTPRGDDIRFGLSAVRNVGENVVASIIETRRSKGRFTDFFDFLAKVEPVVCNKKV 911 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +ESL+ AGA D G++R LL + ++ ++F + Sbjct: 912 VESLIKAGAFDSLGHTRRGLLAVHAEVVDSVMETKRAHAVGQFDLFGSAADAPEAVSIVR 971 Query: 942 KF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIR 996 + V E+ +LG Y S HPL + +L ++ G I Sbjct: 972 RPISDEEWEKPVLLAAEREMLGLYVSDHPLLGVEHVLARLVDCSIAALTDDERPDGAQIT 1031 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +VVS ++ TR+GS VT + E FP Sbjct: 1032 IGGIVVSLTRRVTRQGSPWAVVTLEDLDGSIEVLVFP 1068 >gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter piechaudii ATCC 43553] gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter piechaudii ATCC 43553] Length = 1163 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 400/1055 (37%), Positives = 609/1055 (57%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + Sbjct: 1 MSEAVTNPTPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++PI GC + + D+ ++LLV +GY L EL+S+ + Sbjct: 61 GARGAGVKPIAGCDVWLSNDDDPSKP----------FRLLLLVRNHQGYLNLCELLSKAF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +QGK I WLQ G +GLI L+GG G + +A ++ A + LF Sbjct: 111 LTNQGKGRAEIRREWLQ--GQQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL E +++AH+ + +A + Sbjct: 169 SYYIELQRAGMDGDEAYTQAAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 229 LANPRRVRRFTKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + ++ L + GLE R+A + + Y +RL +E I +M F G Sbjct: 289 DGV----TLDDYLVQLSEEGLEKRMAFLFPNEAEREAKREQYYERLRWECKTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +P P S + + D+ F++ + V L+++++ LEGL R+ HA G++I Sbjct: 465 SKLIPFNPMDPWSLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 525 APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LY Sbjct: 585 EDKRDFDVMALELDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRAAVDYFHNDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP VN F Sbjct: 765 YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877 + ++ + Y L A+KG G I+ A + PF +L DFC RV + + Sbjct: 825 EPVKDKYTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVGKQAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 885 NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + + + E+ LG+Y+SGH D ++ +R++ + Sbjct: 943 -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ S + TR+G + + + + E + F Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033 >gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238] Length = 1168 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 494/1061 (46%), Positives = 670/1061 (63%), Gaps = 52/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGA+ + I PA+A+TDTNNLF ALEFS+ A Sbjct: 1 MAD-PRFIHLRTHTEYSLLEGAVPVKKICGLAEKFGMPAVAVTDTNNLFCALEFSEYAAK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ L++ G+ P P +V L GY L++L S YL D Sbjct: 60 AGVQPIIGCQVDL----GLRVDEPGRRPERPAP-LVFLAQNEAGYMNLMKLNSCAYL-DA 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ + L + EGLI L+GG GPI R AE + +F DRLYV Sbjct: 114 GGQLPQVTVDDLAKY-NEGLICLSGGPDGPIARLLRAGQRPAAEALMAQLAAIFSDRLYV 172 Query: 185 NLQRH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH ++ E V++AY +LPLVATN+ F YEAHD L+ +A Sbjct: 173 ELQRHPVDGGLPEAEQLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGA 232 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F + Sbjct: 233 YVDQNEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRD-------- 284 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E EL+ +A AGL+ RL I +DY +RLDFEL +I M F GYF Sbjct: 285 PILPKFADNEIEELKLQARAGLKNRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 343 LIVADFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K Sbjct: 403 FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSK 462 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+ +AD+ R RE + VDRLL Q+LEGL R+ASTHAAG+VIGD Sbjct: 463 MIPVEGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGD 522 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 R L +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 523 RSLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDL 582 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L T+ +FQ+ESSGM AL M+PD Sbjct: 583 HKSPTGVELYVPAEGTLNDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPD 642 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDIIALV+LYRPGP++NI + KNG +HP ID +L ETQG+I+YQEQVMQI Sbjct: 643 CIEDIIALVALYRPGPMENIPKFCEVKNGISDRDMLHPSIDHILDETQGIIVYQEQVMQI 702 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKK++E MD +K +F++G+++NG++K A +++LL KFA+ Sbjct: 703 AQEMAGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSAENGVNKKKAQEVWDLLDKFAN 762 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 763 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWS 822 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK--PFDSLEDFCSRVDS 874 PP VNT F V D + Y L A+K VG I++A A+ PF +L D RVD Sbjct: 823 PPCVNTSLATFDVQDGTLVYGLGALKNVGVDAMGLIVDARLAEGAKPFSTLFDLARRVDI 882 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K++ +R LE L AGA D +R ++ SLD + Y+ + + + ++F E G Sbjct: 883 KRVGKRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHDQKNSNQVSLFG-EAGDD 941 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVA-TIRG 992 + L + R E + +GFY SGHPLD Y L++ + +E A G Sbjct: 942 LPEPRLSAVEDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAASG 1001 Query: 993 NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A V +Q++K+ +G+R +V S+P +YE F Sbjct: 1002 ALVAKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1042 >gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 1189 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 420/1079 (38%), Positives = 616/1079 (57%), Gaps = 74/1079 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL++HS YS+ +G + + + AD PA+A+TD +N+F ++F ++A AGI+ Sbjct: 3 PSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAGIK 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC + + ++LL + GY RL L++R YL +Q + Sbjct: 63 PIVGCDVYVSND----------AVRDQPFRLLLLCQSHAGYLRLCGLLTRAYLENQYRGR 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL++ GT+GLI L+G G + ++ AE L + LF R Y+ +QR Sbjct: 113 PEIRTEWLRD-GTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQR 171 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + V+LA LP+VAT+ FL+ +D++AH+ + +A V++ K R R Sbjct: 172 FGAAREEQHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKRRQR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T Y K ++EM ++F+DLPEAL+N+VEIA+RC+ L++ P LP F + + Sbjct: 232 QFTAQQYFKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESL--- 288 Query: 307 EENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR+++ GLE R+ Q + +Y+ RLDFE+N I MKF GYFLIVADF Sbjct: 289 -DDFLRSESQRGLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIVADF 347 Query: 364 IQWAKKNNI-------PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 I+WAK PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP Sbjct: 348 IRWAKSFRDARFPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMP 407 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFD+DFCQD R+ VI+YV++ YG V+QI TFG++ +K +RDVGR L PY DRL Sbjct: 408 DFDVDFCQDGRELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCDRLS 467 Query: 477 KLIPNDPAHPVSLQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KL+P + PVSL+ + F ++ V+ L+E+ ++LE L R+ HA G++I Sbjct: 468 KLVPVEGVKPVSLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGVLIA 527 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590 L+ P+Y S+ V+Q++ +E GL+KFDFLGL+TLT++ ++ ++ Sbjct: 528 PGKLTDFCPLYCAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDLGTG 587 Query: 591 -------------------QRGVKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQ 630 Q + IP DD TY + T T +FQ ES GM+ Sbjct: 588 ISDLGSSNAGAGGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRGMKD 647 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L QPDCI+D+IAL +LYRPGP+D I Y NRK+ +E+++ HPL++ ++ T G+++ Sbjct: 648 TLVKAQPDCIDDLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYGIMV 707 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQ AQ+++GY+L AD+LRRAMGKK EEM +Q+ F++GA+KNGI + A IF Sbjct: 708 YQEQVMQSAQVVAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKANEIF 767 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + + KFA YGFNKSHAAAY++++YQTA++K HYP F+A++MT EM N +K+ F QDA Sbjct: 768 DTMEKFAGYGFNKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQDAV 827 Query: 811 QFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 Q ++I+ P +N+ C F+ V + I Y L A+KG G +I+ A A PF L DFC Sbjct: 828 QQGLKILAPDINSSCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLFDFC 887 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 RVD + +NRR +E+L+ AGA D R QLL SLD A+ +K R ++F Sbjct: 888 HRVDKRIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAE--QKARAANQNSLFGD 945 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986 ++ + + + E+ LGFY SGHP + L + Sbjct: 946 DEAHAMP-VQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLADITPD 1004 Query: 987 -------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +I LA MV + +TR+G + VT + + E F Sbjct: 1005 IVTPAGGNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRGK-MAVVTLDDGSAALEVVVF 1062 >gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6] gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6] Length = 1190 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 409/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 14 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 72 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 73 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 122 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I AF + + A + + K+F Y+ Sbjct: 123 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 182 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 183 ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 242 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 243 RRQKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 302 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q Y +RL+FE I +M F GYFLI Sbjct: 303 L----DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 358 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 359 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 418 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 419 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 478 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 479 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 538 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 539 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 598 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 599 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 658 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 659 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 718 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 719 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 778 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 779 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 838 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 839 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 898 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R Q+L S+ + +F + L + Sbjct: 899 GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 955 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 956 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 1012 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1013 TQRGK-MLIALLDDGSGQCEITIF 1035 >gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 1177 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I AF + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + +MV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R Q+L S+ + +F + L + Sbjct: 886 GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022 >gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5] gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5] Length = 1177 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I AF + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + +MV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R Q+L S+ + +F + L + Sbjct: 886 GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022 >gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827] gi|188023078|gb|EDU61118.1| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827] Length = 1144 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 407/1032 (39%), Positives = 598/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+AA PA AITD NL ++F A AGI+PIIG ++ Sbjct: 1 MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFVE--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + +L EGYQ L L+S Y G I WL + Sbjct: 58 -------SEQLGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + + + + ++ L ++ F Y+ L R D Sbjct: 110 EGLILLSGGRQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ +S RP+ +P YL++ E Sbjct: 170 VELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ + + E+ L ++ GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMKTEDFLVMRSKEGL 284 Query: 320 E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E L + +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLKFLFPDEKVRAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +L IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F + + + V + E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWPDQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ T RG + +V+S + T++G+RIG T Sbjct: 944 YLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + + F Sbjct: 1004 DDRSGRLDIMLF 1015 >gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T] Length = 1140 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 417/1028 (40%), Positives = 602/1028 (58%), Gaps = 38/1028 (3%) Query: 26 ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85 ++ K AA PA+AITD NL ++F AGI+PI+G ++ Sbjct: 1 MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 Q + + +L + GYQ L L+S+ Y G I WL E+ EGLI Sbjct: 53 --QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204 +L+GG G + R+ +S + ++ + +++ F DR ++ L R D V+LA Sbjct: 110 LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169 Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263 LP+VATN+ F+ D++AH++ +A+ + RPR +P Y+++ EM + Sbjct: 170 EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229 Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323 F+D+PEAL NTVEIA+RC+ +++ + E+ L +A GLE RL Sbjct: 230 FADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERL 284 Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 A + +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS Sbjct: 285 AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG Sbjct: 345 GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500 + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + + E Sbjct: 405 DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ Sbjct: 464 IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTK 615 +E AGL+KFDFLGL+TLT++ +L+ + +R K D++ IP DD +++ +L Sbjct: 524 SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673 T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E+I Sbjct: 584 ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643 Query: 674 -----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 H + +L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ Sbjct: 644 PDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+ Sbjct: 704 RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847 AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIKGVG Sbjct: 764 AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I+EA F L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL Sbjct: 824 GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883 Query: 907 NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + K A K ++F + + + V + E+ LG Y +G Sbjct: 884 DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943 Query: 966 HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP++ Y + + G ++ T RG I A +VV+ + T++G+RIG T + + Sbjct: 944 HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003 Query: 1025 KEYEANFF 1032 E F Sbjct: 1004 GRLEVMLF 1011 >gi|312144146|ref|YP_003995592.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] gi|311904797|gb|ADQ15238.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus'] Length = 1119 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 367/1040 (35%), Positives = 599/1040 (57%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL H++YSLL+GA+ + +++ K PA++ITD L+ +EF Q+A Sbjct: 1 MAN---FVHLHNHTAYSLLDGAIRIKDLIRKSKEYSLPAVSITDHGVLYGMIEFYQQAKK 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+PIIGC+L + N+ +VLL EGY LI+LV++ +L + Sbjct: 58 ENIKPIIGCELYLA-------ENKLSNRNRKNYHLVLLAENNEGYHNLIQLVTKSWL-EG 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L + ++GLI L+ G + + + +A+K + ++ +FG D + Sbjct: 110 FYYKPRVDKELLAK-HSDGLICLSACLQGEVPQLILNGNYDLAKKAVSDYQAIFGHDSFF 168 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H + +Q +++L+ +PLV +N+S +L ED E D+L+A+ T + Sbjct: 169 LELQDHNLKEEKEAAQGLIKLSNEENIPLVVSNDSHYLEREDSELQDILLALQTGTTIDD 228 Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R + ++Y K+ SEM +F DL A ENTV+IA R + L F + Sbjct: 229 ENRMSFSGQEYYYKSPSEMKKLFPDLDSAYENTVKIADRVNLELDF-----NHFYLPDYP 283 Query: 302 DI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D+ K E L L+ R + +RL +EL +I M ++ YFLI Sbjct: 284 DLKDNKNPEELLEKLCKKALKERGM-------AEDEKAVERLQYELKIIFEMGYAAYFLI 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF+++A+ N+I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD D Sbjct: 337 VYDFVKYAENNDIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDF + RD++I YV+++YG +RVAQI TFG++ A+AA+RDVGRAL +PY +VD+ KLI Sbjct: 397 IDF-DENRDQIIEYVRDRYGRDRVAQIGTFGTMAARAAVRDVGRALGIPYGKVDKAAKLI 455 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + S + ++ + R D + ++++ ++ +EG RH STHAAG++IG PL Sbjct: 456 SSRSGIEES---LNNNKKLRNLYKEDGQIKKMIDYAKGVEGFPRHISTHAAGVIIGAEPL 512 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDL 598 +++VP+ + + + +TQ M +E GL+K DFLGL+ LT+++ +L+ + R K+D+ Sbjct: 513 AEIVPLQK--QDENIITQLPMDDLEALGLLKMDFLGLRNLTVIKNTLELIESRKNEKIDI 570 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656 + IPFDD Y L+T T G+FQ+ES + + ++P+ D+IA+++L RPGP+ + Sbjct: 571 NSIPFDDKNVYDFLSTGKTAGVFQMESYLFKSLNQRLKPERFNDLIAMLALGRPGPLGSN 630 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + ++G+++ +HP + +L+ET G+I+YQEQVM+IA L GYS+ EAD+LRR Sbjct: 631 IVDDFIAIRHGEKEADYLHPKLKAILEETFGMILYQEQVMEIASSLGGYSMGEADLLRRG 690 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK E + ++E+F+ GA NGI+ A IF+ + FA YGFNKSH+ AYA ++YQT Sbjct: 691 MGKKKLEIVAAEREKFVQGAVNNGIAAETAEKIFDQMEYFAGYGFNKSHSTAYAFLAYQT 750 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835 A++K +YP EF+AA + M N +KI + + AR+ +++I+ P +N DFK DN+I Sbjct: 751 AYLKYYYPAEFMAALFSSVMGNQDKIADYIKAAREIDLEILAPDINKSYHDFKAEGDNKI 810 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y L AIK VG+ T + A +K F S+ DF R+D LN + E+ + AGA D Sbjct: 811 RYGLKAIKNVGSNTIYALENARKEKEFKSVVDFLKRIDMSALNIQSFEAFIKAGAFDDIV 870 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRF 952 SR LL + + + + + + R + +F E + + E + Sbjct: 871 ESRAALLINYEELYQKYNNLSRQRAQGQRSFAELFGEENKFIEEDLKYEDIKELETETIL 930 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y S HPLD Y+ + K+ I +++ G + A ++S ++ T++ Sbjct: 931 KQEKEYLGIYLSAHPLDNYQHKITKLNIANISQAIKASDGEKVFTAGNIISYKEHITKRN 990 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +++ ++T S+ + E F Sbjct: 991 NKMAFLTISDQNDKIEIIVF 1010 >gi|145594342|ref|YP_001158639.1| DNA polymerase III subunit alpha [Salinispora tropica CNB-440] gi|145303679|gb|ABP54261.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440] Length = 1177 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 344/1061 (32%), Positives = 535/1061 (50%), Gaps = 44/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG++P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + + + + G L +L SR Sbjct: 64 ILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLTSRS 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ L E +EGLI TG SG + + A K ++ +FG Sbjct: 124 FTEGFFVKWPRMDTELLAE-HSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ + H +R ++ ++++ ++P V TN+S + + EAHDVL+ V + Sbjct: 183 KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQTA 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V+ +R R Y ++ + + + Sbjct: 243 ANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFRNLMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + +E+ R + GL R G + + ++ ++EL VI +M F YF Sbjct: 303 RFPVPEGETDESWFRKETFKGLARRFPNGV------PETHLKQAEYELGVIIQMGFPSYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP+R+SMPD Sbjct: 357 LVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF + RR EVI+YV K+G ++VAQI TFG+++AKAA++D R L PY+ DR+ K Sbjct: 417 VDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476 Query: 478 LIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +P + A+ R +DP V ++++ ++ +EGL R H Sbjct: 477 AMPPAVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQTGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ P+ +P+ R +TQF+ E GL+K DFLGL+ LT++ +L Sbjct: 537 AAGVIMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDDALKN 596 Query: 589 LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + G VDL +P DD TY LL+ TLG+FQL+ MR L M+PD EDI A++ Sbjct: 597 IESNHGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDISAVL 656 Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701 +LYRPGP+ ++ Y RKNG ++I IHP + L+ T G+I+YQEQV + AQ+ Sbjct: 657 ALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQRAAQV 716 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL +AD+LRRAMGKK KE +DK+ F G N S ++++L FADY F Sbjct: 717 LAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWDILVPFADYAF 776 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+H A Y ++SY T ++K +YP E++AA +T D+ +K+ + + R+ IQ++PP V Sbjct: 777 NKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880 NT F I + LAAI+ VG IM + DF S+V++ N++ Sbjct: 837 NTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLSKVEAVVCNKK 896 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFS 935 +ESL+ AGA D +SR LL + V++ ++F + G + Sbjct: 897 TIESLIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADSDAGQST 956 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992 + + + + E+ +LG Y S HPL + +L G Sbjct: 957 TVMPVIAEGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGTVPDG 1016 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ Q++ T++G T + A E FFP Sbjct: 1017 TVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|157738461|ref|YP_001491145.1| DNA polymerase III subunit alpha [Arcobacter butzleri RM4018] gi|157700315|gb|ABV68475.1| DNA polymerase III, alpha subunit [Arcobacter butzleri RM4018] Length = 1187 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 395/1065 (37%), Positives = 600/1065 (56%), Gaps = 48/1065 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F HL +H+ YSLL+GA + + K+ ++A+TD N+F A+ F Sbjct: 1 MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I +++ + L GY+ L+ L S+ Y+ + Sbjct: 61 EGIKPIIGMEAYIHNSEDI-----SDKTNRQRYHLCLYAKNEIGYKNLMYLSSQAYI-NG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174 RI L+E +EGL+ G I+ + A+K L + Sbjct: 115 FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 K++FGD Y+ + RH D+ + Q+++L+ + +VATN++ +L ++D +AH+ M Sbjct: 174 KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 +A + + +R R + + YLK+ ++ ++SD+PEA+E T EIA +C+ +++ P Sbjct: 234 IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIETTQEIADKCNLTIKLGNPTP 293 Query: 293 PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 P F E + + + ++ ++ GLE RL I H Q+YR Sbjct: 294 PNFKFTRQKSQEAGLTLPEPDNEYSLENDKILFIHECRIGLEDRLK---IVPAEHHQEYR 350 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 RL+ E+ +I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDP+ Sbjct: 351 DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV +YG VAQIITFG L AK + Sbjct: 411 PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 RDV R L MPYS+ D + KLIP++ + + + +E ADP R+ E + L Sbjct: 471 RDVARVLDMPYSKADAMAKLIPDELGIDLKNSW-EKEPKIKELCEADPQAARVWEYALAL 529 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A THAAG+VI + PL + P+++ D TQ+N K+IE LIKFDFLGLKT Sbjct: 530 EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT+++++ + QR +V+ +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 590 LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649 Query: 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691 EDIIA+++LYRPGP+++ + + RK+G+ KI H ++ P+L+ T GVI+Y Sbjct: 650 SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F GA G ++ A +F+ Sbjct: 710 QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ Sbjct: 770 LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829 Query: 812 FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867 +++ PP +N + F G + + + AIKG G I+ A + PF L D Sbjct: 830 LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F SR+D K+N+RV+ESL AGA D FGY+R LL ++ I + ++F Sbjct: 890 FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + I LE + + E E+ LGFY SGHPLD YK L K+ + Sbjct: 950 GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + S +K ++KG++ G V+ + E F Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054 >gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1] gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1] Length = 1156 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 407/1042 (39%), Positives = 602/1042 (57%), Gaps = 32/1042 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 SF+HL++H+ +SL++G + + +L + A + PA+AITD NNL + F + A GI+ Sbjct: 2 SSFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G + ++ Q +++ + LL + +GY+ +IE++S+ Y L Q + Sbjct: 62 PICGADVILEEQGEVEV----------RTRLTLLAMSNKGYKNVIEVISKGYQLGQHEGR 111 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + +W++E +E +I L+GG G I ++ A+K L + +F DR Y+ ++R Sbjct: 112 PIVQRAWVEE-HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMER 170 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 R + V+ LA P+VATN+ FL +ED+EAH+ + + S + R Sbjct: 171 TARAGEEDYIHTVIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKR 230 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + + Y K+ +EM ++F D+PEALENTVEIA+RC+ + + LP + + + Sbjct: 231 RYSEEQYFKSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTMDDF 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LEV + + Q+Y RLDFELN+I +M F GYFLIV DFIQW Sbjct: 291 FNELSHKGLQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMDFIQW 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC + Sbjct: 351 AKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMEN 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD+VI YV YG + V+QIITFG++ AKA +RDV R PYS D+L KLIP + Sbjct: 411 RDKVIDYVARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMT 470 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ ++ E D ++E++ LEG+ R+ HA G+VI L+ P+Y Sbjct: 471 LK-KALEEEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDFAPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601 + VTQ++ +E+AGL+KFDFLGLKTLT++ +L + + +D++LI Sbjct: 530 CEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLDIALI 589 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 +D TY LL T +FQLES GM++ ++ + P EDIIALV+LYRPGP+ + +V Sbjct: 590 DLEDKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSGMVD 649 Query: 662 NNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + H + P+L+ T G+I+YQEQVMQIAQ+L+ +SL AD+LR Sbjct: 650 DFINRKHGRAELAFPHPDYQHDDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGADLLR 709 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK E M +Q+ F+ GA+KN I K + NIF+L+ KFA YGFNKSH+AAYA++SY Sbjct: 710 RAMGKKKPEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAYALVSY 769 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTAW+K HYP F+AA ++ +M N +KI F ++ R + + P+VN F V + Sbjct: 770 QTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRAMKLTLELPNVNESVYKFTVNEAG 829 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y L AIKGVG I+EA D PF+ + DFC RV +K+N+RV+E+LV +GA D Sbjct: 830 AVVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRVG-RKVNKRVMEALVRSGAFDT 888 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVR 951 G +R L S+D K A KN ++F E+ T + + R Sbjct: 889 IGPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEWAGRQR 948 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ LG Y +GHP+D Y+ LR+ + LA ++V + K+++ Sbjct: 949 LDGEKDTLGLYVTGHPIDDYEKELRRFVRSRIVDIQPKRDTQ--VLAGLIVDMRVTKSKR 1006 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G I ++T + + E FP Sbjct: 1007 GGNIAFMTLDDRSARIEVTVFP 1028 >gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001] gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001] Length = 1196 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 403/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL++HS +S+ +G + L++++ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + WL+ EGL+ L+G G I A + + A + L + K+F Sbjct: 111 NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTPEQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + + GLE RL Q + + Y QRL+FE I +M F GYF Sbjct: 291 MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 KDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAE 826 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A D PF + DFC+R+D + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDSLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++ S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGIIASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|322435813|ref|YP_004218025.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] gi|321163540|gb|ADW69245.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] Length = 1176 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 404/1056 (38%), Positives = 606/1056 (57%), Gaps = 42/1056 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA ++ ++ + Q ++A+TD N+F A+ F A GI+PI Sbjct: 5 FTHLHLHTDYSLLDGACDVDKLVAHVDKIGQKSVAMTDHGNIFGAVHFFNSAKKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+L I ++ ++ K +++L EGY+ L+ L S L + R Sbjct: 65 LGCELYICQAED----HRAKGDGDKYNHLLVLAENQEGYRNLVRLTSEAALHG-FYRKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + ++L + TEGLI +G +G + + A+ F+++FG ++ +Q H Sbjct: 120 VSKNFLAK-HTEGLIGFSGCLAGEVSQHLMAGDYDKAKTTAGGFEEMFGRGNFFLEVQDH 178 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + D+ + ++ ++PL+ATN+S ++ ++D AH+VL+ V + ++ R + Sbjct: 179 KLAPDKAVIEAMFRMEKDLDIPLIATNDSHYIEDQDARAHEVLLCVQTAGSMNDPKRFKF 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T + Y+K EM F D PE L T++ RC+ L P F + ++ Sbjct: 239 DTEEFYIKTAEEMARFFPDHPEVLSRTMQFPERCNLELNKVDNPFPDFPVPAGETLESYF 298 Query: 308 ENELRNKAVAGLEVRLAQGAI--AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E R E +A + DY RL+ E++ I MKF GYF+IV DFI+ Sbjct: 299 EQVCREGLKKRFETNVAHLERTGKLRKNKTDYEARLNREIDCIKAMKFPGYFMIVWDFIR 358 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ IPVGPGRGS AGS+ AY + ITD+DPL+ LLFERFLNP+R+SMPD DIDFC + Sbjct: 359 YAREQGIPVGPGRGSAAGSLVAYCMEITDVDPLQNELLFERFLNPERISMPDIDIDFCMN 418 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI YVQ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+I Sbjct: 419 RRGEVIEYVQRKYGKDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIQGRIGV 478 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 +S + D+ +A ++P + L++ + +LEGL R A HAAG+VI PL++LVP+ Sbjct: 479 TISEV-LKDNGPLTKAYESEPQIRELIDTALRLEGLVRGAGVHAAGVVIAPSPLTELVPV 537 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 R + VT ++M IEK GL+K DFLGL TLT++ +L + RG VDL+ I D Sbjct: 538 TRAKSEE-IVTSYDMGAIEKMGLLKMDFLGLTTLTVIDDALKLIKLTRGEDVDLATISLD 596 Query: 605 DHETYHLLTTKGTLG-IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 D +TY + + +FQ ES GMR L +P+ +ED+ AL +LYRPGPI +V + Sbjct: 597 DAKTYEQVFHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGMVDEF 656 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK G+ + P ++P+L+ET GV++YQEQVMQI+ L+G+SLS+AD+LRRAMGKK Sbjct: 657 IERKWGRRAVEYELPELEPILRETLGVMLYQEQVMQISNKLAGFSLSQADMLRRAMGKKD 716 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EM KQK +F+ GA++N K +A NIF+L+AKFA+YGFNKSH+AAYA+++Y TA++KT Sbjct: 717 VAEMTKQKVKFMEGAAENKHPKAVAGNIFDLMAKFAEYGFNKSHSAAYALLAYHTAYLKT 776 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HY VEF+AA +T E E + K+ + ++ NI ++PP V F D I + LAA Sbjct: 777 HYTVEFMAALLTSETSKPENVVKYISECKEINIAVVPPDVQISQPSFTPQDGAIRFGLAA 836 Query: 842 IKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 IK VG + I++A A+ F SL +FC +VD + LN+RVLESL+ AGA+DCFG Sbjct: 837 IKNVGHNAIQSIIDARGALQAEGKDGFASLWEFCEKVDLRLLNKRVLESLIKAGAMDCFG 896 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENSS 949 R ++ +LDN AQ +K++ +F + + L + Sbjct: 897 K-RAAVMAALDNAMDRAQKAQKDKAAGQHGLFFGGIFDSDVPAAGAAVEALPNAPEWDEH 955 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRG----NNIRLA 998 R +NE+ VLGF+ SGHP+D Y+ LR M + + RG N I +A Sbjct: 956 TRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQQFRRGGPEPNEISIA 1015 Query: 999 AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 ++ + K+++ G + + E FP Sbjct: 1016 GVITGLKVAKSKRSGEMYAQAVLEDTTGKIELICFP 1051 >gi|294101731|ref|YP_003553589.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM 12261] gi|293616711|gb|ADE56865.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM 12261] Length = 1144 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 373/1038 (35%), Positives = 595/1038 (57%), Gaps = 25/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VHS YSLL+GA+ + +++A+ PA+A+TD ++ A+EF + A Sbjct: 1 MTTRP-FVHLHVHSEYSLLDGAIRCGELAERVASWGMPAVALTDHGAMYGAIEFYDRCLA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+GC++ +D + + +G+ ++LL +GY LI+LVS D Sbjct: 60 AGIKPIVGCEVYVDPEGHTSREKKGRN-----FHLLLLAENQQGYNNLIKLVSIANT-DG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L + ++G+I + +G I A + ++ + G D + Sbjct: 114 FYYRPRIDYDLLTQY-SQGIIASSACLAGEIPSLILQGKENDALAKAHMYRDIMGEDNFF 172 Query: 184 VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + + ++ ++ +VQ+A + LVATN++ +L++EDY+ H++L+ V ++ Sbjct: 173 LEIMYNAIPEQAVVNRSLVQMARKNNFNLVATNDAHYLNKEDYDWHEILLCVQTGATIND 232 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR + + + E + +A L+ + Sbjct: 233 PDRMSFSTNDFYLRSPEEMDSLFGAELPDALDNTLAIAERCSLKFDLGTRDYKLPSFDLP 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E+ L +A+AGL+ RL + + ++Y++RLD+EL VI +M F+GYFLIVA Sbjct: 293 EGETLESNLEKEAMAGLKQRLHKDNV-----PEEYKKRLDYELKVIKKMGFAGYFLIVAS 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I+ AK +IP+GPGRGS AGS+ AY+L IT++DPL+++LLFERFLNP+R+SMPD D D Sbjct: 348 IIRAAKDRDIPIGPGRGSAAGSLVAYSLRITELDPLKYNLLFERFLNPERVSMPDIDTDV 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 R+E+++Y+ KYG +RVAQIITF +++KAA+RDVGRAL MPYS VD + KLIP Sbjct: 408 SDKGREELLQYIAEKYGVDRVAQIITFDRMKSKAAIRDVGRALGMPYSDVDVVAKLIP-- 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +A+ R D +V RLL+ + K+EGL RH S HAAG+VI P++ L Sbjct: 466 DGARSIPEALDQSEDLRNLTHKDLAVSRLLDSASKIEGLARHCSQHAAGVVITPMPITDL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ R + VTQF M+ +EK GL+K DFLGLKTL++L+++++ + DL+ I Sbjct: 526 VPVRRIG-ENQIVTQFPMEPLEKLGLVKMDFLGLKTLSVLEEAINNIKLNGKTPPDLNKI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P +D+ TY +L TLG+FQLES+GMRQ L ++PDC ED+IA+++LYRPGP+ + +V Sbjct: 585 PLNDNLTYEMLQRGNTLGVFQLESTGMRQLLRKIKPDCFEDLIAVLALYRPGPLGSGMVD 644 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y RK+G+ + +HP + +LKET GVI+YQEQVMQ A L+GYSL EAD+LRRAMGK Sbjct: 645 QYIERKHGRAVVEYLHPELSEVLKETYGVILYQEQVMQSAACLAGYSLGEADLLRRAMGK 704 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E M +Q++ F G +++ + A IF+++ +FA YGFNKSH+AAYA+ISYQTA++ Sbjct: 705 KKVEVMQQQRKMFADGCAQHNVPARKAEEIFDIIQEFAGYGFNKSHSAAYALISYQTAYL 764 Query: 780 KTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 K ++ EF+AA +T ++ + + + ++ ++ R I+++PP VN+ F D + + Sbjct: 765 KANFQPEFMAAYLTSQIGSKKDVMARYIREVRNSGIEVLPPDVNSSMESFAAVDEVVRFG 824 Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+ G I+ A F SL +F RVD + +N+ V+E+L+ AGA D + Sbjct: 825 LGAVAKAGHGAVEAIIAARECGGEFSSLWNFLCRVDLRVVNKSVIENLIKAGAFDGLNSN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R QL+ +L + AQ + + ++ + + + L R + E+ Sbjct: 885 RRQLISALPDFVALAQRKGEEKNQCSLLSLLDEDSESGDLEPELPDIEDYAIYERLDMEK 944 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015 V+G Y SGHP ++ ++ + N ++ M++S +K T++G + Sbjct: 945 EVVGLYISGHPFTQHETLVSRYSTCSISNLKYWRSRNLFPQIGGMILSVHEKYTKRGDPM 1004 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G + + + E FP Sbjct: 1005 GILEVEDAESKLEVICFP 1022 >gi|119026148|ref|YP_909993.1| DNA polymerase III subunit alpha [Bifidobacterium adolescentis ATCC 15703] gi|118765732|dbj|BAF39911.1| DNA polymerase III alpha subunit [Bifidobacterium adolescentis ATCC 15703] Length = 1196 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 339/1082 (31%), Positives = 546/1082 (50%), Gaps = 64/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60 Query: 65 AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103 AGI+PIIG + + + + + + + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + F+ +FG D Y+ H ++ ++ +A PL+ATN+S + Sbjct: 180 FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +Y+K+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + H + +E + K GLE R G + + ++ Sbjct: 300 CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------NGKPSLEVLRQ 351 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL Sbjct: 352 ADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPLEH 411 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL+D Sbjct: 412 GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510 R + +S D++ K +P + L I D S FRE +DP R Sbjct: 472 SARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDTKR 531 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + + +EGL R HA ++G P++ P+ + T E GL+K Sbjct: 532 ITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR Sbjct: 591 MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDGMR 650 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683 L+ ++P+ DI AL++LYRPGP+D Y RKNG +KI IHP + +L Sbjct: 651 SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 711 ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSE 770 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K Sbjct: 771 EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG I+ + Sbjct: 831 LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGHGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV + LNRR++ESL+ AGA D +R L + +++ + Sbjct: 891 YVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQAE 950 Query: 922 KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++FA + + + + + + E+ +LG Y S HPL + I Sbjct: 951 GQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010 Query: 975 LRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L + + G + +A ++ + ++ ++KG+ VT + + Sbjct: 1011 LVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQCM 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] Length = 1133 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 492/1026 (47%), Positives = 677/1026 (65%), Gaps = 23/1026 (2%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74 +V S+YSLLEGA+ ++ + PA+AITD NL+ LEFSQ +G+QPI+GC Sbjct: 2 RVRSAYSLLEGAIKAYDMGKLAHKNGMPAVAITDRCNLYGGLEFSQSCKDSGVQPIVGCA 61 Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 L + + +P+ V+L +G+ L +L S Y+ + Sbjct: 62 LPVKGIGGTPTEKWAR-----IPTFVVLCQNEQGWLNLTKLSSIAYVDSDNMDEPHVTWD 116 Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194 + EGL++L+G GP+D F N + L + +FGDR Y+ LQRH G + Sbjct: 117 QVTA-HNEGLLLLSGSYDGPVDVLFRQNRPDEGKAALKSMLDVFGDRFYIELQRHEGRPK 175 Query: 195 --YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252 E+ +V+ AY +++PLVATN++ F + Y AH+ L+ ++ ST + +DR RVT DH Sbjct: 176 GSATEAGLVEFAYQNDVPLVATNDAYFAGADMYRAHEALLCISDSTFMGIEDRRRVTKDH 235 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 + K + M +F+DL EA +NT+EIARRC+F++ PILPRF + E+ EL Sbjct: 236 WFKPAAAMRELFADLTEACDNTIEIARRCAFLVNKRDPILPRFDT----GAGRNEDEELA 291 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 +A GL++RL Q +A +DY RL+ E+ VI +M F GYFLIV+DFI+W K + + Sbjct: 292 WQAREGLKMRLKQVKLAC--PEEDYWARLEREIGVIQKMGFPGYFLIVSDFIKWGKSHGV 349 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 PVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI Sbjct: 350 PVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIS 409 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQA 491 YVQ+KYG +RVAQIITFG+LQA+A LRDVGR +Q+P QVDRLCK++PN+PA+P + QA Sbjct: 410 YVQHKYGRDRVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLCKMVPNNPANPTTLAQA 469 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 I + R REAR D V LL+ + KLEGLYR+ASTHAAGIVIGDRPL++LVP+YRD RS Sbjct: 470 IEIEPRLREARDDDEQVKNLLDTALKLEGLYRNASTHAAGIVIGDRPLTELVPLYRDPRS 529 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611 D+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++ +L +RGV ++ S++P DD TY L Sbjct: 530 DIPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAERYLKKRGVDINFSILPLDDTATYEL 589 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L + ++G+FQLES GMR L ++ +E+I AL+SLYRPGPIDNI Y +RK G+ +I Sbjct: 590 LASGQSIGVFQLESQGMRDTLRKLRCSSLEEITALISLYRPGPIDNIDTYVDRKFGRMEI 649 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD QK R Sbjct: 650 DMLHPSLEPVLKETYGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKKKEEMDLQKVR 709 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F++GA + G+ + + IFEL+ KFA YGFNKSHAAAYA ISYQT ++K ++PVEF AAS Sbjct: 710 FMTGAKEKGVPEAQSDFIFELVNKFAGYGFNKSHAAAYAFISYQTGYLKANHPVEFFAAS 769 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 +L++ N +K+ F QDAR+F + I+PP +N DF V + + Y+L AI+ VG + Sbjct: 770 FSLDIANTDKLAVFYQDARRFGVPIVPPDINRSMADFDVENGELLYALGAIRNVGFEAMQ 829 Query: 852 HIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 +++A + F L DF R+D K +NRR +E+L AGA D +R Q++ + D + Sbjct: 830 SVVQAREEGGKFTDLFDFLERIDPKAVNRRAIENLAKAGAFDSIHPNRAQIVAAADMLIA 889 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 YAQ V R + ++F + + L K + R + E +GFY SGHPL Sbjct: 890 YAQSVAAERASSQVSLFGSTDAS---RPRLPKVAASAGPERLDEELAAIGFYLSGHPLQD 946 Query: 971 YKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027 + ++ I Y E++ A + R+A +V +Q++ G + +VT S+P+ EY Sbjct: 947 MLDVFKRRKITLYAEAMSLALEGHDAFRMAGIVRRRQERAAAGSGEKFAFVTLSDPSGEY 1006 Query: 1028 EANFFP 1033 E FP Sbjct: 1007 EV-LFP 1011 >gi|237752431|ref|ZP_04582911.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC BAA-430] gi|229375920|gb|EEO26011.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC BAA-430] Length = 1164 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 369/1053 (35%), Positives = 586/1053 (55%), Gaps = 36/1053 (3%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + ++P F HL +H+ YSLL+G + + KI ++A+TD N+F A+EF + Sbjct: 1 MMSQTPKFTHLHLHTEYSLLDGLNKVKVLAKKIKEYGMDSVAVTDHGNMFGAIEFYKAMK 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A GI+PI+G + + + + + + + L EGY+ L+ L S+ L Sbjct: 61 AEGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLSSQACLYG 114 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAEKRLLTFK 175 RI L+E + GLI + +G + + A++ L +K Sbjct: 115 -FHMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNTKKDDNKGRKGYERAKEVALEYK 172 Query: 176 KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 ++FG+ Y+ L RH ++ ++Q+++L+ + ++ATN++ + ++ D A +V + Sbjct: 173 EIFGEDFYLELMRHGIEEQQLIDNQLLKLSQETGIKIIATNDTHYANQSDSTAQEVAFCI 232 Query: 235 AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 +R R T + Y+K +M +++DLPEALE+T EIA +C+ L + P P Sbjct: 233 GFGKDFDDPNRMRHTVQEFYIKTPEQMAELYADLPEALEHTQEIANKCNLELHLGDPTPP 292 Query: 294 RFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F + + + K GL+ RL +Y +RL+ E+ +I Sbjct: 293 SFKFTQEYAKAEGLDFTQDSEYFAYKCREGLKKRLLNVP---QEKHTEYAERLEREIEII 349 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 MKF GY LIV DF++ AK+ IPVGPGRGS AGS+ A+ L IT+IDPL++ LLFERFL Sbjct: 350 NSMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLLFERFL 409 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DFCQ RR E++ YV KYG VAQ+ITFG ++AKA +RDV R + MP Sbjct: 410 NPERVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMP 469 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 Y+ D KLIP + + + + E DP ++ E + LEG R+ TH Sbjct: 470 YNDADSFAKLIPKELEITLEDA-FNKEPKIAELISRDPLAKKVWEFALILEGTKRNPGTH 528 Query: 529 AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 AA +VI + L P+YR R + TQ++MK++E LIKFDFLGLKTLT++ +L Sbjct: 529 AAAVVIDSTQELWHKAPLYRSQRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTVVDDALK 588 Query: 588 FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + +R ++D I +D + Y L + TLG+FQ+ESS + + M+P EDIIA Sbjct: 589 LIEKRSGKRIDFLNIDVNDKKVYETLQSGNTLGVFQIESSMFQGINKRMRPSTFEDIIAT 648 Query: 647 VSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ++L RPGP+++ + + NRK+GKE IV + ++P+L+ T G I+YQEQVMQI Q + G Sbjct: 649 IALGRPGPLESGMVDDFINRKHGKEPIVYMFDELEPILRPTYGTIVYQEQVMQIVQRIGG 708 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 +SL AD++RRAMGKK + M K +F GA G + A ++EL+ KFA YGFNKS Sbjct: 709 FSLGGADLIRRAMGKKDAQIMADNKSKFADGAVAQGFDRAKAEELWELIVKFAGYGFNKS 768 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAYA+I+++TA++KT+YP EF+AA +T E ++ +K+ ++ ++A Q I+++PPS+ Sbjct: 769 HSAAYAMITFETAYLKTYYPKEFMAALLTSEKNDTDKVVEYTEEANQMGIKVLPPSIQKS 828 Query: 825 CVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR 879 ++F V G+ I + L AIKG G I+E + F LEDF R+D K+N+ Sbjct: 829 ELEFSVAEVDGEASILFGLGAIKGAGEIAINIILEERKQNGNFKDLEDFLKRIDPSKVNK 888 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 + LE+ + +GALD GY+R LL+ ++++ + A+ + + ++F +++ ++ Sbjct: 889 KSLEAFIKSGALDGMGYTRKSLLEQVESLTEAAKLSQTAQKEAAGSLFGNDEELMRVQLD 948 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 L+ + E E+ LGFY SGHPLD YK +++ + + I + Sbjct: 949 LQDLGEYSQKEILEFEKESLGFYASGHPLDAYKESFKEIDYTPSNQVKDVAENSRILILG 1008 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K ++ G R G + + E F Sbjct: 1009 QIEDIIVKFSKTGKRYGMLKIQDLYGSVELTIF 1041 >gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum CM4] gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 1173 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 519/1050 (49%), Positives = 704/1050 (67%), Gaps = 33/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AGIQPI Sbjct: 10 FVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL I + + P +IVLL GY L+ L SR + + Sbjct: 70 AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV +QRH Sbjct: 127 LAVSVL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + R R+ Sbjct: 186 GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302 TP H R+ M+ +F DLP+AL +VEIA RCS+ + PILP F D Sbjct: 246 TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305 Query: 303 IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 E EL +A AGLE+RL Q A G+ +DYR RL FEL+VI + Sbjct: 306 ALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELDVIVK 365 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP Sbjct: 366 MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L+MPY Sbjct: 426 ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 QVD+L KL+P +PA+PV+ QAI + + ++A +P V RL+EIS+KLEGL+RHASTHA Sbjct: 486 QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L Sbjct: 546 AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDIIALV+L Sbjct: 606 KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665 Query: 650 YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 YRPGP+ NI VY RK G++ HP+++P+LKET G+I+YQEQVM++A++L+GY Sbjct: 666 YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYGFNKSH Sbjct: 726 TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPSVNT Sbjct: 786 AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R LE+L Sbjct: 846 VVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGALDC R + +++ + K AQ + T+ ++F + + + Sbjct: 906 IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002 + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R R+AA V+ Sbjct: 965 WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++T+ G+++G V S+ +EA F Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|331696645|ref|YP_004332884.1| DNA polymerase III subunit alpha [Pseudonocardia dioxanivorans CB1190] gi|326951334|gb|AEA25031.1| DNA polymerase III, alpha subunit [Pseudonocardia dioxanivorans CB1190] Length = 1185 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 343/1073 (31%), Positives = 536/1073 (49%), Gaps = 52/1073 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +T + SFVHL H+ +S+L+GA L+++ + A PA+A+TD N++ A EF + Sbjct: 1 MTAA--STDSFVHLHTHTEFSMLDGAARLDDLFRESAKMGMPALAMTDHGNVYGAYEFWR 58 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQ--------GKTPFPTVPSIVLLVSTAEGYQRL 112 KA AAG++PIIG + + + P + LL EG L Sbjct: 59 KAKAAGVKPIIGMEGYLSPGSRHERKRATLGGQTVSDDNPGEMYTHMTLLAENTEGMHNL 118 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S L + R+ L+ G +G+I TG SG + R + A + Sbjct: 119 FRLSSLASL-EGYYYKPRMDRELLETYG-KGIIATTGCPSGEVARLLQQDRYDDACQAAS 176 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG D Y L H ++ + + +L LP +ATN+ + ED + H+V Sbjct: 177 DYRDIFGRDNFYCELMDHGIEIEKRVQEDLFRLKKELGLPGLATNDLHYTYAEDTKPHEV 236 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 L+ V ++ +R + + + + D + + Sbjct: 237 LLCVQTGKTLADPNRFKFDAQDFYLKSAAEMRAQWDPIHPEACDNTLLIAERVDVSFTEG 296 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + EE+ L + GL R G + YR++ ++EL+VI + Sbjct: 297 QDLMPRAPVPEG--ETEESWLVKEVEKGLHRRFPNGV------TEQYRKQAEYELSVIIQ 348 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYF++ AD IQ AKK I GPGRGS AGS+ AY L ITD+DP++ L+FERFLNP Sbjct: 349 MGFPGYFIVTADLIQHAKKVGIRCGPGRGSAAGSLVAYVLGITDLDPIKHKLIFERFLNP 408 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468 +R+SMPD D+DF + RR E+IRY KYG +R+AQIIT+ +++AKAA++D R Q Sbjct: 409 ERISMPDIDMDFDERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPG 468 Query: 469 YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 YS DR+ K +P + + ++ + R ADP V +++ ++ LE Sbjct: 469 YSVADRITKAMPPAIMGKDIPLSGIFDPGHKRYSEATEVRALYEADPQVREIIDTARGLE 528 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG+++ +PL ++P+ R +TQF+M E GL+K DFLGL+ L Sbjct: 529 GLKRQWGVHAAGVIMSSKPLLDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNL 588 Query: 580 TLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L+ + G + + DD +TY LL TLG+FQL+ MR L M P Sbjct: 589 TIIDDALENIELNGKPPLVIEDVELDDPKTYDLLARGDTLGVFQLDGGPMRDLLRRMAPT 648 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 +DI A+ +LYRPGP+ + Y +RKN ++++ IHP + LK+ T G+I+YQ Sbjct: 649 EFDDISAVGALYRPGPMGANAHNDYADRKNKRQEVTPIHPELAEPLKDILGETYGLIVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ L+GY+L +AD+LRRAMGKK KE +DK+ E F G +G S ++++ Sbjct: 709 EQVMAIAQKLAGYTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSADAVKTLWDI 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FN++H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R+ Sbjct: 769 LLPFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRM 828 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I ++PP VN +F + I + L AI+ VG I+ A + F DF + Sbjct: 829 GITVLPPDVNESVRNFAPVGDDIRFGLGAIRNVGFNVVDAIVAARKEKGAFSDFSDFLRK 888 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 VD+ N++V+ESL+ AGA D G+SR LL + +K + ++F Sbjct: 889 VDAVVCNKKVIESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASMGQFDLFGSMD 948 Query: 932 GTFSDKITL---------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G D ++ R E+ +LG Y SGHPL + +L Sbjct: 949 GGDGDDSDPALAGIFDVKVPTDEWDTKHRLAVEREMLGLYVSGHPLHGVEGVLAAKADTP 1008 Query: 983 YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + G + + ++ ++ + G + A E FFP Sbjct: 1009 IQNILDGTVGDGAQVTVGGILAGVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1061 >gi|154488936|ref|ZP_02029785.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis L2-32] gi|154083073|gb|EDN82118.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis L2-32] Length = 1196 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 339/1082 (31%), Positives = 546/1082 (50%), Gaps = 64/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60 Query: 65 AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103 AGI+PIIG + + + + + + + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + F+ +FG D Y+ H ++ ++ +A PL+ATN+S + Sbjct: 180 FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +Y+K+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + H + +E + K GLE R G + + ++ Sbjct: 300 CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------NGKPSLEVLRQ 351 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL Sbjct: 352 ADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPLEH 411 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL+D Sbjct: 412 GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510 R + +S D++ K +P + L I D S FRE +DP R Sbjct: 472 SARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDAKR 531 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + + +EGL R HA ++G P++ P+ + T E GL+K Sbjct: 532 ITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR Sbjct: 591 MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDGMR 650 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683 L+ ++P+ DI AL++LYRPGP+D Y RKNG +KI IHP + +L Sbjct: 651 SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 711 ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSE 770 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K Sbjct: 771 EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG I+ + Sbjct: 831 LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGHGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV + LNRR++ESL+ AGA D +R L + +++ + Sbjct: 891 YVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQAE 950 Query: 922 KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++FA + + + + + + E+ +LG Y S HPL + I Sbjct: 951 GQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010 Query: 975 LRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L + + G + +A ++ + ++ ++KG+ VT + + Sbjct: 1011 LVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQCM 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia alexandrii DFL-11] Length = 1138 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 542/1024 (52%), Positives = 710/1024 (69%), Gaps = 12/1024 (1%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74 +VHS+ SLLEGAL + +LD AD QPA+AI DTNNLF A EFS KA AGIQPI CQ Sbjct: 2 RVHSALSLLEGALPIKRLLDLAKADDQPALAIADTNNLFGAQEFSSKAWGAGIQPITACQ 61 Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 L + D L G+ P + +VL+ T GY L+EL SR +L + + +S Sbjct: 62 LSVFFDDGLD---SGRRGEPALADLVLIAMTETGYGNLMELTSRAFLDTETGLRPHVSIS 118 Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-D 193 +L + + +I+LTGGS G I +A+ RL T F R YV +QRH + Sbjct: 119 YLLQKAQD-VIVLTGGSLGAIGAPLLAGRKDLAKSRLKTLDDGFAGRCYVEIQRHGMESE 177 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 R E + LAY LPLVATN + F + EDYEAHD L+ ++ V+ + DR R+TP+HY Sbjct: 178 RKTEEAFLDLAYEMGLPLVATNEAFFPAREDYEAHDALICISEGRVLIESDRRRLTPEHY 237 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--L 311 K R+EM +F+DLPEAL +T+EIA+RCSF APILPRF + D + E L Sbjct: 238 FKTRAEMCVLFADLPEALASTIEIAQRCSFRPMTRAPILPRFAGADADPEEAERAETEEL 297 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + +A GL+ RL +A G +DY RLD+E +I RMKF GYFLIVADFI+WAK ++ Sbjct: 298 KRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWAKNHD 357 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR+EVI Sbjct: 358 IPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQSRREEVI 417 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490 RYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV+ Q Sbjct: 418 RYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPVTLGQ 477 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 AI D+ R REA + V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+YRD R Sbjct: 478 AIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLYRDPR 537 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610 SD+PV QFNMK +E AGL+KFDFLGLKTLT++ ++ + +RG+ VD++ +P DD ++Y Sbjct: 538 SDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVASLPIDDRKSYE 597 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 LLT T G+FQLES GMR+A+ GM+PD EDIIALV+LYRPGP++NI VYN K+G+++ Sbjct: 598 LLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKHGEQE 657 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI EM+ Q+ Sbjct: 658 PDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEMEVQRA 717 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 RF+ GA + GI+KT A IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++ VEF+AA Sbjct: 718 RFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHSVEFMAA 777 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 SMTL+M N EK+ F Q+AR+ I+++PPS+N V F V D +I Y++ A+KGVG Sbjct: 778 SMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVYFDVSDGKILYAMGAVKGVGEQAV 837 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 HI+E PF SL DF R+ K LN+R LE+LV AGA D +R ++ + LD I Sbjct: 838 EHIVEVRGQTPFQSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLDRIIG 897 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 AQ E+N+T + +F + + L++ S + + E +GFY S HP+D Sbjct: 898 LAQRTEENKTLGQDELFGG--SDSEEPLQLDEVHGWTSEEKLQREHSAIGFYLSAHPIDE 955 Query: 971 YKPILRKMGIKGYEESVAT-IRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y +L KM + + + +G + RLA V+S Q++KT+ G+R+G S+ +YE Sbjct: 956 YASVLEKMRAQPWAQFADAVKKGASAGRLAGTVISMQERKTKSGTRMGIARLSDATGQYE 1015 Query: 1029 ANFF 1032 A F Sbjct: 1016 ALLF 1019 >gi|325281577|ref|YP_004254119.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM 20712] gi|324313386|gb|ADY33939.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM 20712] Length = 1254 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 362/1104 (32%), Positives = 583/1104 (52%), Gaps = 94/1104 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F H VHS YS+L+GA S+ +++K AD Q A+A+TD N+F F GI+PI Sbjct: 3 FTHFHVHSQYSILDGAASIPGLIEKAKADGQTALALTDHGNMFGIKLFYDTCRQKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ + + + N+ K + +++L GY L++L S + D R Sbjct: 63 LGCEAYVA---RVSLYNKEKPIDRSGEHLIILAKNLTGYLNLVKLCSTAFC-DGFYYRPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L++ EGLI+ + G ID+ + AEK L +K LFG+ Y+ + RH Sbjct: 119 IDKTQLEK-HHEGLIISSACLGGEIDQKIMAGDLEGAEKAALWYKNLFGEDYYLEVMRHP 177 Query: 191 GYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 D + +++ +++A + L+ATN+ FL+EED EAHD+L+ + Sbjct: 178 AADPKQRAEIYDNQQRCIQEKIKIARKLNIKLIATNDVHFLNEEDAEAHDLLICLNTRKD 237 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R R T + K EM+ +F DLPEA+ENT EI + P++P F Sbjct: 238 IDDPTRMRYTRQEWFKTTQEMIDLFPDLPEAIENTQEITDKVEEYELDSDPLMPVFPIPP 297 Query: 300 CDDIQKE-----------------------------------------------EENELR 312 ++E E + L+ Sbjct: 298 ELGTEEEYRQKFSQEDLFNEFTRDEKGNVVLTEEEANKKIKKLGGYDRLYRIKLEADYLK 357 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 + G+ R + + + +R+ FEL+++ M F GYFLIV DFI+ A+ + Sbjct: 358 ELTMKGVVKRYGEN------PSPEIMERIIFELHIMKTMGFPGYFLIVQDFIRAARDMGV 411 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 VGPGRGS AGS AY L IT+IDP+++ LLFERFLNPDR+S+PD D+DF R +V+ Sbjct: 412 IVGPGRGSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRISLPDIDVDFDDAGRQQVLE 471 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 +V KYG ++V+ I+TFGS+ AK A++DV R L++ S+ +RL K++P P + Sbjct: 472 WVTEKYGADKVSHIVTFGSMAAKMAIKDVARVLKLELSEANRLAKMVPEAPKMTLKKAYK 531 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + +E + +P + + ++ ++ LEG R HA GI+I PL+ +P+ Sbjct: 532 ENPDLEKEKQSLNPLISKTIQFAETLEGSIRQTGVHACGILISRDPLTDHIPIMPTEGES 591 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611 L TQ++ ++E GLIK DFLGL+TL++++ LD + + + + ++ + IP DD ET+ L Sbjct: 592 LMTTQYDGHFVEPIGLIKMDFLGLRTLSIIKTCLDNIKKSKHIVLNENEIPLDDEETFKL 651 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T T G+FQ ES GM++ L +QP+ ED++A+ +LYRPGP++ I + RK+G+E I Sbjct: 652 FTRGDTTGLFQFESPGMKKHLRALQPNRFEDLVAMNALYRPGPMEYIPSFIRRKHGEEPI 711 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 HP+++P LK+T G+ +YQEQVM ++ L ++ ++D LR+AMGKK E + + K + Sbjct: 712 EYDHPMMEPYLKDTYGITVYQEQVMLQSRALGLFTRGQSDTLRKAMGKKKFELLAELKGK 771 Query: 732 FISGASKN-----------GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 F+ G N + + I+ FA Y FNKSH+ YA I+YQT ++K Sbjct: 772 FVEGCKNNPDFVQGAKEKGKDVEELVNKIWGDWEAFASYAFNKSHSVCYAYIAYQTGFLK 831 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839 HYP EF+AA+++ + ++ K+ F + ++ + ++ P VN DF V +I + + Sbjct: 832 AHYPAEFMAANLSNNLSDITKVTVFMDECKRMGLSVLAPDVNESYNDFTVNSHGQIRFGM 891 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AAIKGVG I+E + P+ + DF R+D K +N++ +E+LV AG LD FGY R Sbjct: 892 AAIKGVGEAAVEKIIEEREKNGPYKDVYDFFERIDYKSVNKKTIENLVTAGGLDSFGYHR 951 Query: 899 MQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 Q L LDN+ Y Q +++ N +F G K + + + Sbjct: 952 AQYLHLVDATTTVLDNLVNYGQKNQQDSMNLQATLFGELDGFEVTKPNIPDCEPWHDYEK 1011 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKK 1008 + E+ ++G Y + HPLD YK ++ + EE + T +G I +A ++ +K++ K Sbjct: 1012 SKKEKELIGIYLTSHPLDPYKLEMQLL-CTPVEELNSGLETFKGKEINIAGIITAKREGK 1070 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G G +T + + YE FF Sbjct: 1071 TKTGKDFGILTLEDFSGTYELAFF 1094 >gi|325108084|ref|YP_004269152.1| DNA polymerase III subunit alpha [Planctomyces brasiliensis DSM 5305] gi|324968352|gb|ADY59130.1| DNA polymerase III, alpha subunit [Planctomyces brasiliensis DSM 5305] Length = 1172 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 369/1044 (35%), Positives = 565/1044 (54%), Gaps = 35/1044 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P F HL HS YSLL+GA + +++K ++AITD NLF ALEF +K Sbjct: 8 PSQP-FAHLHCHSHYSLLDGANRIPAMIEKCKTHGMNSLAITDHGNLFGALEFYEKCRGG 66 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI PIIG + I + + LL + G++ L+++ S+ YL + Sbjct: 67 GINPIIGYEAYIAPGKRTDRSAS--RMKEASFHLTLLATNQVGFKNLVKMASKAYL-EGF 123 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI L E EG+I L+G +S + + + AE+ L ++K FGDRLY+ Sbjct: 124 YYKPRIDKDLL-EAHNEGIICLSGCASSELSHLLLTDQQEQAEQLLRWYEKTFGDRLYLE 182 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q + + ++LA PLVATN++ +L++ D AHD+L+ V + V+ + Sbjct: 183 IQDSGVQIQKDCMERTIELADRFGFPLVATNDAHYLNQGDAPAHDILLCVNTRSTVNDAN 242 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R ++ + +L+ EM + F P+A+ + EIA RC L + P F Sbjct: 243 RMQLDGCEFHLRTPEEMYNAFPHCPDAVARSQEIADRCDIELDLTTRHFPVFDPPPG--- 299 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K + LR+ GL+ R Q Y RLD EL VI +M +S YFLIV DF Sbjct: 300 -KTDVQYLRDLCEEGLKWRYGDQPD------QVYYDRLDKELGVIEKMGYSSYFLIVWDF 352 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++A+ IP RGS G++ AY L ++D+ P+++ LLFERFL+P R PD DIDFC Sbjct: 353 ARFARDKGIP-CTARGSACGAIVAYLLGLSDVCPIQYDLLFERFLDPSRSEAPDIDIDFC 411 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +DRR VI +V+ KYG VAQI TFG+L+AK ALRDV RAL +P ++V+ + K+IP+ Sbjct: 412 RDRRQWVIDFVKEKYGEASVAQIGTFGTLKAKNALRDVARALDVPLARVNEVAKMIPDTL 471 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ +E D + +++ + LEGL R+ THAAG+VIGD+PL + V Sbjct: 472 NIKLK-DAVDSTPELKEQYDQDRQIREVIDFAMALEGLARNVGTHAAGVVIGDQPLDEYV 530 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLI 601 P+ R +TQ+ +EKAGL+K DFLGL+ L++L K++ + + + Sbjct: 531 PLQRITGKTDIITQW--TDVEKAGLLKMDFLGLRNLSILDKAVKNVRENNPDFNMRPIDF 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 P DD ET+ LL T GIFQLES GMR L M+PD DIIA +LYRPGP++ ++ Sbjct: 589 PLDDKETFALLQRGETKGIFQLESGGMRDLLTKMKPDKFADIIATSALYRPGPLEGGMVM 648 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K+G++ + ++HP++D +L ET GV++YQEQVM+I + G LS A +A+ K Sbjct: 649 TYVEVKHGRQPVPTVHPIVDEVLAETYGVMVYQEQVMRILNRVGGIELSSAYRCIKAISK 708 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K E + E F+ G+ KN + K +A ++EL+ KFA YGFNKSH+ AY I+YQTA++ Sbjct: 709 KKLEMIAAFHEEFLEGSQKNDMDKKVAQELWELIEKFAGYGFNKSHSTAYGAIAYQTAYL 768 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K HYP EF+AA ++ M++ E+I + D R+ I I+PP +NT VDF+V I + + Sbjct: 769 KAHYPKEFMAALLSCGMESSERIAEHIDDCRRMKITILPPDINTSEVDFRVAGENIAFGM 828 Query: 840 AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 AIKGVG + + +++ A+ P+ S+ D C RVD K + + LE+L+ AGALD FG +R Sbjct: 829 GAIKGVGESAVQAVVDEREANGPYKSIFDLCERVDPKAMTKGNLETLIKAGALDSFGPNR 888 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRFEN 954 Q +++ + A K++ ++F ++ T+ + S + Sbjct: 889 EQHTLAVEMAVQMAARKHKDKLRGQRSLFGGGGGGDETVEELAATVPEAPDWTHSQKLNI 948 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK--- 1011 E+ V GFY + HPL + + + +E + L M+ + ++ T+ Sbjct: 949 EKEVFGFYLTSHPLTEFADQITPLCSHTTKELAEAEDQIEVILGGMISAIKKATTKNPSR 1008 Query: 1012 --GSRIGWVTFSEPAKEYEANFFP 1033 S+ F +P +P Sbjct: 1009 NGNSKYVNFDFEDPQGVVRCILWP 1032 >gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222] gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222] Length = 1156 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 487/1058 (46%), Positives = 666/1058 (62%), Gaps = 59/1058 (5%) Query: 5 LE-KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + SP F+HL+ HS +SLLEGA+ + + D A + PA+A+TD+N LF+ALEFS KA Sbjct: 1 MPENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQ 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AG+QPIIGCQ+ + + +VLL G+ L+EL + +YL D Sbjct: 61 DAGVQPIIGCQVTLAAE--------------ATGPVVLLAQNEAGWLNLMELSTCLYLRD 106 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + L EGLI LTGG+ GP+ + A F RLY Sbjct: 107 D-HALPHVTPEELAA-HAEGLICLTGGAGGPLGQLVLQGRQAEARALAERLAAAFPTRLY 164 Query: 184 VNLQRHRGYDRYRESQ-------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 V LQRH + + ++ +AY +LPLVATN+ F E ++AHD L+ ++ Sbjct: 165 VELQRHHDAEGQPVPEETGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISE 224 Query: 237 STV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 R R+TP HY K+ +EM ++F+DLPEA+ NTVEIARRC+F + Sbjct: 225 RAYVDQTAPRRRLTPQHYFKSAAEMATLFADLPEAIRNTVEIARRCAF--------AVKK 276 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + +E ELR +A GL RLA I ++Y +RL FEL +I +M F G Sbjct: 277 HKPILPRFADDEVEELRRQAWDGLRARLA--VIPHSATVEEYEERLRFELGIIEQMGFPG 334 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SM Sbjct: 335 YFLIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSM 394 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+P+ QVDRL Sbjct: 395 PDFDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRL 454 Query: 476 CKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K+IP + PVS+ +AD+ R REA V+RLL+ + K+EGL R+ASTHAAG+VI Sbjct: 455 SKMIPVEGVKPVSVTKALADEPRLREAARE-EVVNRLLDYAAKIEGLLRNASTHAAGVVI 513 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--- 591 GDRPL +LVP+YRD SD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Sbjct: 514 GDRPLHRLVPLYRDPASDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINDGGR 573 Query: 592 ---------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 +G + ++ IP DD +Y L + T+ +FQ+ESSGM AL M+ Sbjct: 574 PLHVAADGRQLYEPAKGAENQINAIPLDDKPSYDLFASARTVAVFQVESSGMMDALRRMK 633 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P CIEDI+ALV+LYRPGP++NI Y KNG + SIHP ID +L ETQG+I+YQEQVM Sbjct: 634 PTCIEDIVALVALYRPGPMENIPTYCEVKNGLRPLESIHPSIDDILAETQGIIVYQEQVM 693 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QIAQ+++GYSL AD+LRRAMGKKI EEM K++ +F+ G GI A +F+LL KF Sbjct: 694 QIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFVEGCKAQGIDTKKAGEVFDLLEKF 753 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M ++ +K+ + ++A + I+ Sbjct: 754 ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREADRMGIET 813 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN F V D +I Y+L A+KGVG I++A A +PF + DF RVD ++ Sbjct: 814 VPPCVNRSEALFSVKDGKILYALGALKGVGVEAMNLIVQARAGRPFADMHDFARRVDMRR 873 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 + +R LE L AGA D +R ++L+SLD + ++ V++ + ++F + Sbjct: 874 VGKRPLEMLARAGAFDALEPNRARVLKSLDGLVAWSTAVQEAAASSQSSLFGGGEDLPPP 933 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI 995 + V + + E +GFY SGHPLD Y+P LR+ G++ E A G + Sbjct: 934 RPV--AAPVWMPAEKLAEEHAAVGFYLSGHPLDDYQPALRRKGVQTLAEVTQAAADGALV 991 Query: 996 -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +LA V +Q+KK+ +G+R +V S+P YE F Sbjct: 992 AQLAGTVAHRQEKKSARGTRFAFVGLSDPTGLYEVTVF 1029 >gi|312880004|ref|ZP_07739804.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260] gi|310783295|gb|EFQ23693.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260] Length = 1136 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 392/1039 (37%), Positives = 579/1039 (55%), Gaps = 34/1039 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F+HL VHS YSLL+GA+ +++ ++ A+A+TD ++ EF +K+ Sbjct: 1 MSEP--FIHLHVHSEYSLLDGAIRCTELVETASSMGMNAVALTDHGVMYGCEEFFEKSEK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC++ +D +GK +VL GY+ L++LVS + Sbjct: 59 AGIKPIFGCEVYVDPSGIDNREGKGKN-----HHLVLWAENETGYRNLVKLVSLANT-EG 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183 RI L EGLI + +G I + A R ++ + G+ R Y Sbjct: 113 FYYKPRIDHHLLAR-HAEGLIGSSACLAGEIPSLILSGDYEAARDRAFLYRDILGEGRFY 171 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + + ++ ++V+LA + + PLVATN++ +L D HDVL+ V + V Sbjct: 172 LEVMHNALREQALANRELVRLARSEDFPLVATNDAHYLRRSDASWHDVLLCVQTQSTVQT 231 Query: 243 KDRPRVTPDHYLK--NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR R D + ++LP+AL NT EIA RC+ L + +LP F E Sbjct: 232 TDRYRFGADDFYFRSPEEMWSLFGAELPDALRNTQEIADRCNVKLTLGKYLLPEFPIPEG 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E L +A GL R + + Y +RL +EL VI +M F GYF IV Sbjct: 292 ----QTLETFLEKRAWEGLARR-----LGTQEIPEAYGERLRYELGVIRQMGFPGYFCIV 342 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 AD I AK IPVGPGRGS AGS+ A+AL IT++DPLR+ LLFERFLNP+R+SMPD D Sbjct: 343 ADIITAAKGQGIPVGPGRGSAAGSLVAWALGITELDPLRYHLLFERFLNPERISMPDIDT 402 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D RRDEV+ Y+ KYG +RV+QIITF +++KAA+RDVGRAL MPYS VDR+ KL+P Sbjct: 403 DISDKRRDEVLAYIVQKYGADRVSQIITFDRMKSKAAIRDVGRALAMPYSDVDRVAKLVP 462 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +A+ ++ D V +L+E + +EG+ RH S HAAG+VI PL Sbjct: 463 E--GVKTLGEALEKAPDLKQLSDQDLQVRQLIETASHIEGIARHCSQHAAGVVITPVPLV 520 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599 ++VP+ R + VTQ++M+ IE GL+K DFLGL+TL++L+ +L + A +DLS Sbjct: 521 EMVPVRRIG-ENQVVTQYSMEPIEHLGLVKMDFLGLRTLSVLEDTLSNIVANHKPPLDLS 579 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD ET+ +L TLG+FQLESSGM+ L ++PDC ED+IA+++LYRPGP+ + + Sbjct: 580 AIPMDDPETFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGM 639 Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 Y RK+G+ HP ++ LKET GVI+YQEQVMQ A L+GYSL EAD+LRRAM Sbjct: 640 VEDYIERKHGRAVTQYPHPCLEKALKETYGVILYQEQVMQCAAELAGYSLGEADLLRRAM 699 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK + M+KQ+ +F+ GA + G+ A IF+ + KFA+YGFNKSH+AAYA+ISYQTA Sbjct: 700 GKKKADVMEKQRSKFVDGARERGVDPVKAEEIFDSIEKFAEYGFNKSHSAAYALISYQTA 759 Query: 778 WMKTHYPVEF-LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 ++K HY EF A ++ ++ + ++ + R ++PP VN F I Sbjct: 760 YLKAHYGAEFLAAYLSSMVGARMDILGRYIRGVRDLGFPVLPPDVNESKAAFAAVGKVIR 819 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+ + VG I++A PF S DF RVD + +NR V+E+L+ AGA D Sbjct: 820 FGLSGVGKVGEAAVDSILKARSEGGPFASFWDFLIRVDLRAVNRGVVENLIKAGAFDALW 879 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R QLL++L + + Q ++ ++F E+ D +E + + E Sbjct: 880 PNRRQLLENLPTLLEMGQ--KRAERGNQTSLF-LEEQEADDVPPMEPCEDFEVRQKLDFE 936 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + LG Y SGHP + + +R E R + ++V +++ T++G Sbjct: 937 KEALGLYISGHPFEQIEGRVRPYTTCSLAEVEHWQSRDTPPVVGGLLVGVKERYTKRGDP 996 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 +G + F + + E FP Sbjct: 997 MGILEFEDTETKLETVCFP 1015 >gi|294792867|ref|ZP_06758014.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27] gi|294456766|gb|EFG25129.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27] Length = 1135 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 363/1031 (35%), Positives = 598/1031 (58%), Gaps = 27/1031 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +SLL+G L +++ + QPA+AITD N+++A+ F ++ A G++PI Sbjct: 4 FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + + + ++LL T EGY+ L+++VS+ R Sbjct: 64 IGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L++ ++G+I L+ G I + ++ + A++ + + + +G D ++ +Q H Sbjct: 121 ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + + ++++L+ + L +VA+N+ ++ +ED +A D+ + ++ ++ DR + Sbjct: 180 GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ EM +F +P A+ENT++IA RC+ LP F E + Sbjct: 240 PNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----TS 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G +++ ++RLD+EL+VI M F YFLIV D++++A Sbjct: 296 KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R Sbjct: 349 REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + I YV KYG RV+QIITFG+ A+A +RDVGR L +P ++V+R+ K+IPN+ + Sbjct: 409 GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +D +V L + +KLEG+ R++STHAAG+VI PL VP+ Sbjct: 469 DKAL--QGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 VTQ++ IE+ GL+K DFLGL+TLT++ +L + RG+ +DL IP DD Sbjct: 527 ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDA 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 +LT T G+FQLES G+ + + ++P+ ED+I LV+LYRPGP+ + + + +R Sbjct: 586 AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++GK+++ +HP+++P+LK+T GVI+YQEQVMQIA + G+SL +AD++RRAMGKK + Sbjct: 646 RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + Q+E FI G+ NGI +++A +F+LL FA YGFNKSH+AAYA I+YQTA++K HY Sbjct: 706 LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 EF+AA+MT M N++K+ + ++ N++++ P +N F V D+ I + L IK Sbjct: 766 PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDSIRFGLGGIKN 825 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG ++ + + DFC RVD++ +N+R+LESL+ GA+D F +R QLL Sbjct: 826 VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLLH 885 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ Q +K+ N+F + D I + + + ++E+ GFY Sbjct: 886 MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPTVEDLSEDDKLKDEKEYTGFYI 944 Query: 964 SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 +GHPL Y L + + E+ G I ++ +K + T++ + + + Sbjct: 945 TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIED 1004 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 1005 YSGAANVVAFP 1015 >gi|124025641|ref|YP_001014757.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. NATL1A] gi|123960709|gb|ABM75492.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. NATL1A] Length = 1172 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 376/1050 (35%), Positives = 585/1050 (55%), Gaps = 34/1050 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV + HS YSLL+GA L ++ + PA+A+TD ++ A+E + AA I+P Sbjct: 2 AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V++ GY+ L++L + +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +L + +EGLI T G I +A VA + +K++ GD Y+ Sbjct: 118 FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRIDVAREVAAWYKEVLGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR S++V+++ ++ ++ATN++ +LS+ D EAHD L+ V ++S Sbjct: 177 IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ EM S+F+D + + +E + S ++ + + + Sbjct: 237 RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L+ + GL L Y++RLD+EL VI +M F YFL+V D Sbjct: 297 DGYQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + + F E D V + ++++ ++EG + HAAG+VI Sbjct: 475 RGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVIAANS 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597 L LVP+ R+ +TQ+ M+ IE GL+K DFLGL+ LT+++K++D + + K D Sbjct: 535 LDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIGKRLD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +PF D +T+ LL+ GIFQLESSGMRQ ++ ++P +EDI ++++LYRPGP+D Sbjct: 594 PDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+GKE I H ++P+L ET G+++YQEQ+M+IAQ L+GY+L +AD+LRR Sbjct: 654 GLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYTLGQADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM + + F+ GA KNG++ IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQRHRTLFVDGAVKNGVTDVIAEQLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ + +KI+++ + I +MPP++NT VDF DN I Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPKDNSI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + +A+K +G R I+ + D F SL FC R+ +NRR LE+L+ +GALDC Sbjct: 834 LFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGALDCL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KITLEKF 943 +R QL+ LD ++A K+RT+ N+F T ++ ++ Sbjct: 894 EKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPNDDYSSAPKAKEV 953 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 S + + E+ +GFY S HPL + + + + + AM+ Sbjct: 954 QEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEEQKDKSKVSVIAMIPE 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ TRKG R+ + + EA FP Sbjct: 1014 MREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043 >gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54] Length = 1163 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 398/1055 (37%), Positives = 609/1055 (57%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + Sbjct: 1 MSEAVTTPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AGI+PI GC + + D+ ++LLV +GY L EL+SR + Sbjct: 61 GARGAGIKPIAGCDVWLSNDDDPAKP----------FRVLLLVRNHQGYLNLCELLSRAF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +QGK I WLQ G +GLI+L+GG G + +A ++ A + +F Sbjct: 111 LTNQGKGRAEIRREWLQ--GQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL E +++AH+ + +A + Sbjct: 169 SYYIELQRAGMDGDEAYTQAAMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F Sbjct: 229 LANPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + GLE R+A + + Y +RL +E I +M F G Sbjct: 289 DGVSL----DDYLVQLSEEGLEKRMAFLFPDEAERASKREQYYERLRWECKTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +P P + + + D+ F++ + V L+++++ LEGL R+ HA G++I Sbjct: 465 SKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 525 APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LY Sbjct: 585 EDKRDFDVMALSLDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP VN F Sbjct: 765 YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877 + ++ + Y L A+KG G I+ A + PF +L DFC RV + Sbjct: 825 EPVADKHTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + Sbjct: 885 NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQSSLFGDDSSDVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + + + E+ LG+Y+SGH D ++ +R++ + Sbjct: 943 -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ S + TR+G + + + + E + F Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033 >gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8] gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8] Length = 1164 Score = 752 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 402/1053 (38%), Positives = 609/1053 (57%), Gaps = 45/1053 (4%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + + P FVHL+VHS +S+++G + + +++ ++A QPA+A+TD +NLF ++F + A Sbjct: 4 EAVTTPPPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGA 63 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + + D+ ++LLV +GY L EL+S+ +L Sbjct: 64 RGAGIKPIAGCDVWLSNDDDPAKP----------FRLLLLVRNHQGYLNLCELLSKAFLT 113 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +QGK I WLQ G EGLI L+GG G + +A ++ A + LF Sbjct: 114 NQGKGRAEIRREWLQ--GQEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSY 171 Query: 183 YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR D ++LA LP+VAT+ FL E +++AH+ + +A +++ Sbjct: 172 YIELQRAGMDGDEAYTQAALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILA 231 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R + + YL + EM F+D+P AL NTVEIA+RC+ L + P LP F E Sbjct: 232 NPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEG 291 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE R+ A + + Y +RL +E I +M F GYF Sbjct: 292 VGL----DDYLVQLSEEGLEKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGYF 347 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SMPD Sbjct: 348 LIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPD 407 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQD R+ VI YV+ KYG V+QI TFG+L AKA +RD GR L MPY D L K Sbjct: 408 FDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSK 467 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP +P P + + + D+ F++ + V L+++++ LEGL R+ HA G++I Sbjct: 468 LIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAP 527 Query: 537 RPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---R 592 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ ++ Q Sbjct: 528 GKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNED 587 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D+ + DD Y +L T +FQLES GM++ L+ ++P+ EDIIA+++LYRP Sbjct: 588 KRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRP 647 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+++ + + NRK+G+ + H ++ LK T GVI+YQEQVM I+Q++ GYSL A Sbjct: 648 GPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AAYA Sbjct: 708 DLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+ ++++PP VN F+ Sbjct: 768 LISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFEP 827 Query: 831 GDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 ++ + Y L A+KG G I+ A + PF +L DFC RV + +NR Sbjct: 828 VVDKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNR 887 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 888 RTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG-E 944 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 L K + + + E+ LG+Y+SGH D ++ +R++ + Sbjct: 945 LAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLVRVEPQRDLQ--WMCG 1002 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ S + TR+G + + + + E + F Sbjct: 1003 VLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1034 >gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1] gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1] Length = 1173 Score = 752 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 519/1050 (49%), Positives = 704/1050 (67%), Gaps = 33/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AGIQPI Sbjct: 10 FVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL I + + P +IVLL GY L+ L SR + + Sbjct: 70 AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV +QRH Sbjct: 127 LAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + R R+ Sbjct: 186 GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302 TP H R+ M+ +F DLP+AL +VEIA RCS+ + PILP F D Sbjct: 246 TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305 Query: 303 IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 E EL +A AGLE+RL Q A G+ +DYR RL FEL+VI + Sbjct: 306 ALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELDVIVK 365 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP Sbjct: 366 MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L+MPY Sbjct: 426 ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 QVD+L KL+P +PA+PV+ QAI + + ++A +P V RL+EIS+KLEGL+RHASTHA Sbjct: 486 QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L Sbjct: 546 AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDIIALV+L Sbjct: 606 KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665 Query: 650 YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 YRPGP+ NI VY RK G++ HP+++P+LKET G+I+YQEQVM++A++L+GY Sbjct: 666 YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYGFNKSH Sbjct: 726 TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPSVNT Sbjct: 786 AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R LE+L Sbjct: 846 VVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGALDC R + +++ + K AQ + T+ ++F + + + Sbjct: 906 IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002 + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R R+AA V+ Sbjct: 965 WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++T+ G+++G V S+ +EA F Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71] gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71] Length = 1168 Score = 752 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 412/1046 (39%), Positives = 592/1046 (56%), Gaps = 42/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL+VHS YSL +G + + + + A PAIA+TD N + ++F + A AGI+ Sbjct: 2 SDFVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G + + + LLV A GY L L+SR Y Q + Sbjct: 62 PIFGADVWVTES----------LKDDEAHPLCLLVMNATGYLNLTRLLSRAYREGQTHEG 111 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ W+ E EGL+ L+ G++G + +A + VA +RL ++F R Y+ L R Sbjct: 112 PRVLWDWVAE-SAEGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHR 170 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 D V LA + P+VATN+ F+ ++EAH+ + +A S V+ R Sbjct: 171 TGRVGDEEHVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQR 230 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + + YL++ EM +F D+PEALENTV IARRCS +++ LP + E Sbjct: 231 RYSEEQYLRSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGM----T 286 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVAD 362 + R + GL+ RL I + +A+ DYR RLDFEL+ I M F GYFLIV D Sbjct: 287 MDAYFRELSHRGLDERLKTLQIHQRENAEDLERDYRARLDFELDTIIDMGFPGYFLIVMD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK+ IPVGPGRGSGAGS+ AY L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIRWAKERGIPVGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RRDEVI YV YG E V+QIITFG+L AKA +RDV R Y DRL K+IP + Sbjct: 407 CMERRDEVIDYVAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +A+ + ++ D + +++ +LEG+ R+ HA G+VI L+ Sbjct: 467 VGMTLE-KALEQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597 +Y D VTQF+ +E AGL+KFDFLGL+TLT++ + + +D Sbjct: 526 SALYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DD ++ LL + T +FQLES GM++ + ++PDC EDIIALV+LYRPGP+ + Sbjct: 586 INQIPLDDPASFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQS 645 Query: 658 IVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + K H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 646 GMVDNFIDRKHGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F +GA+ G+ +A +F+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K HYP F+AA M+ E+DN +KI F ++ R+ + + P VN F V Sbjct: 766 LVSYQTAWLKAHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L AIKG+G ++E+ AD PF L DFC+R D +KLNR+ LE+LV + Sbjct: 826 SEAGEIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFS 944 GA D G R LL +D+ + A+ NR ++F + +L Sbjct: 886 GAFDSLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQGDPYGSLRHVR 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LG Y +GHP+D + LR+ + + RG N R+A +++S Sbjct: 946 PWTDRERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRG-NCRVAGLILSM 1004 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + K+ +G + + + EA Sbjct: 1005 RAMKSARG-AMAVFVLDDRSARLEAT 1029 >gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD] gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD] Length = 1177 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 409/1044 (39%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I AF ++ + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EMV++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R Q+L S+ + +F + L + Sbjct: 886 GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022 >gi|315636761|ref|ZP_07891990.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri JV22] gi|315478978|gb|EFU69682.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri JV22] Length = 1187 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 396/1065 (37%), Positives = 600/1065 (56%), Gaps = 48/1065 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F HL +H+ YSLL+GA + + K+ ++A+TD N+F A+ F Sbjct: 1 MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I +++ + L GY+ L+ L S+ Y+ + Sbjct: 61 EGIKPIIGMEAYIHNSEDI-----SDKTNRQRYHLCLYAKNEIGYKNLMYLSSQAYI-NG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174 RI L+E +EGL+ G I+ + A+K L + Sbjct: 115 FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 K++FGD Y+ + RH D+ + Q+++L+ + +VATN++ +L ++D +AH+ M Sbjct: 174 KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 +A + + +R R + + YLK+ ++ ++SD+PEA+E T EIA +C+ +++ P Sbjct: 234 IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIEATQEIADKCNLTIKLGNPTP 293 Query: 293 PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 P F E E + + ++ ++ GLE RL I H Q+YR Sbjct: 294 PNFKFTRQKSQEAGLILPEPELEYSLENDKILFIHECRIGLEDRLK---IVPTEHHQEYR 350 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 RL+ E+ +I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDP+ Sbjct: 351 DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV +YG VAQIITFG L AK + Sbjct: 411 PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 RDV R L MPYS+ D + KLIP++ + + + +E ADP R+ E + L Sbjct: 471 RDVARVLDMPYSKADAMAKLIPDELGIDLKNSW-EKEPKIKELCEADPQAARVWEYALAL 529 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A THAAG+VI + PL + P+++ D TQ+N K+IE LIKFDFLGLKT Sbjct: 530 EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT+++++ + QR +V+ +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 590 LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649 Query: 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691 EDIIA+++LYRPGP+++ + + RK+G+ KI H ++ P+L+ T GVI+Y Sbjct: 650 SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F GA G ++ A +F+ Sbjct: 710 QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ Sbjct: 770 LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829 Query: 812 FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867 +++ PP +N + F G + + + AIKG G I+ A + PF L D Sbjct: 830 LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F SR+D K+N+RV+ESL AGA D FGY+R LL ++ I + ++F Sbjct: 890 FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + I LE + + E E+ LGFY SGHPLD YK L K+ + Sbjct: 950 GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ + S +K ++KG++ G V+ + E F Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054 >gi|72382105|ref|YP_291460.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. NATL2A] gi|72001955|gb|AAZ57757.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. NATL2A] Length = 1172 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 377/1050 (35%), Positives = 586/1050 (55%), Gaps = 34/1050 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV + HS YSLL+GA L ++ + PA+A+TD ++ A+E + AA I+P Sbjct: 2 AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V++ GY+ L++L + +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I +L + +EGLI T G I +A + VA + +K++ GD Y+ Sbjct: 118 FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRNDVAREVAAWYKEVLGDDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR S++V+++ ++ ++ATN++ +LS+ D EAHD L+ V ++S Sbjct: 177 IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ EM S+F+D + + +E + S ++ + + + Sbjct: 237 RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L+ + GL L Y++RLD+EL VI +M F YFL+V D Sbjct: 297 DGYQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV KYG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L A+ + + F E D V + ++++ ++EG + HAAG+VI Sbjct: 475 RGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVIAANS 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597 L LVP+ R+ +TQ+ M+ IE GL+K DFLGL+ LT+++K++D + + K D Sbjct: 535 LDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIGKRLD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +PF D +T+ LL+ GIFQLESSGMRQ ++ ++P +EDI ++++LYRPGP+D Sbjct: 594 PDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+GKE I H ++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYSLGQADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM + + F+ GA KNG++ IA +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVSEMQRHRAIFVDGAVKNGVTNVIAEQLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ + +KI+++ + I +MPP++NT VDF DN I Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPKDNSI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + +A+K +G R I+ + D F SL FC R+ +NRR LE+L+ +GALDC Sbjct: 834 LFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGALDCL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KITLEKF 943 +R QL+ LD ++A K+RT+ N+F T ++ ++ Sbjct: 894 EKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPTDDYSSAPKAKEV 953 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 S + + E+ +GFY S HPL + + + + + AM+ Sbjct: 954 QEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEDQKDKSKVSVIAMIPE 1013 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ TRKG R+ + + EA FP Sbjct: 1014 MREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043 >gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001] Length = 1139 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 486/1037 (46%), Positives = 667/1037 (64%), Gaps = 27/1037 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL +GA+ + +I+ PA+ I D+ NLF ALEFSQ Sbjct: 1 MSYA-DFVHLRVHSAYSLSQGAIRVPDIVGLAKEMHMPAVGIADSGNLFGALEFSQYCTK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPIIG Q+ + + P +VLL G L L S + Sbjct: 60 SGIQPIIGSQI--------GLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSD 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L E EGL++LTGG+ GP+ + ++ AEK L + FGDRL V Sbjct: 112 P-ADPFVSLDLLCEK-AEGLLLLTGGTRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIV 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH G ++ E V+ LA LPLVATN F + + YEA D L+ +A +++K Sbjct: 170 ELHRHGLGVEKAVEPGVLTLADRFGLPLVATNECFFPTPKMYEAQDALLCIAQGRTMAEK 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K M ++F+DLP+A +NT+EIARRC+ ++ P+LP + Sbjct: 230 DRFRVTPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVR---E 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ LR A GLE R++ G + Y++RL FEL++I++M F GYF+IVADF Sbjct: 287 GATEDETLRAMAWEGLEHRMS-GMKLDAETVEKYKERLRFELDIISKMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVI YV+++YG +RVAQIITFG LQA+AA+RDVGR L +PY V+R+ +LIPN+P Sbjct: 406 QDRRDEVISYVRHEYGSDRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ +AIA + + +E R D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QL Sbjct: 466 AKPVTLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G VDLS IP Sbjct: 526 VPLYRDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L T G+FQ E +GMR L+ M+P IED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDPKTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+ H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHGEV-WEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+E F GA+K GI + AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK + Sbjct: 705 SEMDHQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837 +PV FLAA M+L + EK+ Q+A + +I ++PP++N DF V I Y Sbjct: 765 HPVAFLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEKQPDGTYAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAAIK VG ++E +KPF +L DF R+D K +NR LE+L AGA +C + Sbjct: 825 ALAAIKKVGYGAMESLVEVRGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ +S D I + A + + +F + + L + R E Sbjct: 885 RARVFRSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAE 942 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015 +GF+ + HPLD Y +LR++G+ + + G +++A VV K+++ TR G+++ Sbjct: 943 AIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKM 1002 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ + E F Sbjct: 1003 AWVRLSDASGGCEVTVF 1019 >gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13] gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13] Length = 1183 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 414/1051 (39%), Positives = 603/1051 (57%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 22 MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 80 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG + Q + + + +L + +GYQ L L+SR Y Sbjct: 81 AGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGY 130 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGLI+L+G G + + + Q ++ L +++ F D Y+ Sbjct: 131 GAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYL 189 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL E+D++AH++ +A+ + Sbjct: 190 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDP 249 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ EM +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 250 KRPRNYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 304 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + +Y +RLD EL VI +M F GYFLI Sbjct: 305 GDMTTEDFLVLKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 364 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 365 VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 424 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 425 VDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 484 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 485 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 543 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L + R Sbjct: 544 TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLE 603 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 604 PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 663 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 664 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 723 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKSH+A Sbjct: 724 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSA 783 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 784 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 843 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE Sbjct: 844 FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILE 903 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942 L+ +GA D G R L+ SL + K A K ++F + + + Sbjct: 904 KLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYAN 963 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP+ Y + + G + ++ T RG +V Sbjct: 964 VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1023 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + T++G+RIG T + + E F Sbjct: 1024 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1054 >gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] Length = 1196 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 407/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + I WL+ EGL+ L+G G I A + + A++ L + K+F Sbjct: 111 NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R TP+ Y + + EM ++F+D+P AL NTVEIA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTPEQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + + GLE RL Q + Y QRL+FE I +M F GYF Sbjct: 291 MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 KDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP +N F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAE 826 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A D PF + DFC+R+D + +NRR +E+L+ Sbjct: 827 PDGKRSKTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDTLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++ S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGIIASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601] gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601] Length = 1174 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 502/1066 (47%), Positives = 683/1066 (64%), Gaps = 57/1066 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ L + A + PA+A+TDTNNLFSALEFS A Sbjct: 1 MAD-PRFIHLRVHTEYSLLEGAIRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ G+ P P +VLL GY+ L++L S +YL Sbjct: 60 AGVQPIVGCQVDL----RYVQPAPGERPKAPAP-VVLLAQNERGYENLMKLNSCLYLRRD 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + + L L+E G EG+I L+GG GP+ R N A+ L +++ DRLYV Sbjct: 115 G-ELAHVLLDELEEYG-EGVICLSGGPDGPVGRLLRENHRAAAQTLLTRLHQIYQDRLYV 172 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G D R E V++AY +PLVATN+ F E YEAHD ++ +A Sbjct: 173 ELQRHPGEDGLPEAERLTERGHVEMAYEMGIPLVATNDVYFPKENMYEAHDAMICIAEGA 232 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+ R R+TP HYLK EM ++F+DLPEALENTVEIA+RC+F+ + Sbjct: 233 YVDQQEPRRRLTPQHYLKTPQEMATLFADLPEALENTVEIAKRCAFMAY--------RRD 284 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A GL+ RL+ I + Y++RLDFEL +I M F GYF Sbjct: 285 PILPKFADDEVVELRRQANEGLQKRLS--VIPHAVTVEKYQERLDFELGIIEGMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 343 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 403 FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 462 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ + D+ R RE + VDRLL+ ++EGL R A THAAG+VI D Sbjct: 463 MIPVEGVKPVSIEKALQDEPRLREEAEREEVVDRLLKYGMQVEGLLRSAGTHAAGVVIAD 522 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RP +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G + Sbjct: 523 RPTDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRPI 582 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++LIP DD +TY L + T+ +FQ+ES+GM AL+ M+P Sbjct: 583 HVAADGSQLYEPAEGGENQMNLIPLDDDKTYKLYASAKTVAVFQVESTGMMDALKRMKPT 642 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI VY KNG+ +I S+HP ID +L ETQG+I+YQEQVMQI Sbjct: 643 CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPSIDHILAETQGIIVYQEQVMQI 702 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKKIKE MD ++ +F SGA+KNG+ K A +F+LL KFA+ Sbjct: 703 AQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFESGAAKNGVEKKKATEVFDLLEKFAN 762 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ EK+ + + ++ + + Sbjct: 763 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFYETKKGLKLDYI 822 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868 PP VN F V D ++ Y+L A+K VG R ++E DKPF ++ DF Sbjct: 823 PPCVNRSQASFDVEDGKLVYALGALKNVGLDAMRLVVEGRRSVPEDPRSPDKPFVNVYDF 882 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RVD K++ +R LE + AG D +R ++ +SLD + Y+ + + + + ++F Sbjct: 883 ARRVDLKRVGKRPLEMMARAGCFDQLDRNRRRIFESLDALVAYSAAIHEQKASAQVSLFG 942 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 E G + L + R E + +GFY SGHPLD Y P L++ + +E Sbjct: 943 -EAGDDLPEPRLSPAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVLTLDEVED 1001 Query: 989 TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 RG ++ +V +Q++K+ KG+R + S+P+ YE F Sbjct: 1002 KARGGACIAKMGGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1047 >gi|302866756|ref|YP_003835393.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC 27029] gi|315503171|ref|YP_004082058.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5] gi|302569615|gb|ADL45817.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC 27029] gi|315409790|gb|ADU07907.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5] Length = 1177 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 345/1061 (32%), Positives = 536/1061 (50%), Gaps = 44/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ + A PA+AITD N+ A +F ++A AG++P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEAARLGMPAVAITDHGNMHGANDFYKQAMDAGVKP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + + + + + + +G L +L SR Sbjct: 64 ILGVEAYVAPESRFHKARVKWGRPEQKSDDVSGNGAITHMTMWAANRDGLHNLFKLNSRA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ + + E EG++ TG SG + A K ++ +FG Sbjct: 124 SMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVAAAYQDIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ + H +R + ++A ++P V TN+S + E EAHDVL+ V Sbjct: 183 KDNYFLEIMDHGLDIERRVRDGLTEIARKLDIPPVVTNDSHYTHEAQAEAHDVLLCVQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + V+ +R R Y ++ + + + + Sbjct: 243 SNVADPNRFRFEGGGYFVKSADQMRAVDSSELWQQGCRNTLLVAEKVDPAGMFTFHNLMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + EE+ R + AGL R G +Y EL VI +M F YF Sbjct: 303 RFPIPEGETEESWFRKETFAGLARRFPGGIPEGHVVQAEY------ELGVIIQMGFPSYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+R+SMPD Sbjct: 357 LVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L PY+ DR+ K Sbjct: 417 VDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGFPYAVGDRITK 476 Query: 478 LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +P + A+ R +DP V +++E ++ +EGL R H Sbjct: 477 AMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIETAKGIEGLIRQTGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ P+ + +P+ R + +TQF+ E GL+K DFLGL+ LT++ ++ Sbjct: 537 AAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKN 596 Query: 589 -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 G ++DL +P DD + Y LL TLG+FQL+ MR L M+PD EDI A++ Sbjct: 597 IQLNHGRELDLLGLPLDDRQAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVL 656 Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQL 701 +LYRPGP+ D+ Y RKNG ++I IHP ++ L T G+I+YQEQV + AQ+ Sbjct: 657 ALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTYGLIVYQEQVQRAAQI 716 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S ++++L FA Y F Sbjct: 717 LAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWDVLVPFAGYAF 776 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ IQ++PP V Sbjct: 777 NKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMRIQVLPPDV 836 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 NT F I + L A++ VG IM + + DF S+VD+ N++ Sbjct: 837 NTSAGPFTPVGKEIRFGLGAVRNVGANVVASIMRCREEKGDYTDFYDFLSKVDAVVCNKK 896 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFS 935 +ESL+ AGA D + R LL + V++ ++F + G + Sbjct: 897 TIESLIKAGAFDSLQHPRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFGEADTGGST 956 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992 + + + + E+ +LG Y S HPL + +L G Sbjct: 957 TVMPVIGEGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGTVPDG 1016 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ Q++ T++G T + A E FFP Sbjct: 1017 AVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400] gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400] Length = 1193 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 407/1046 (38%), Positives = 608/1046 (58%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ + ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDREKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + I WL+ EGL+ L+G G I A + + A++ L + K+F Sbjct: 111 NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR + + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIEVQRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + Sbjct: 231 NPRRSKRFTPEQYFRTQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYF 357 + ++ L + + GLE RL Q + A Y +RL+FE I +M F GYF Sbjct: 291 MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 QDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAE 826 Query: 832 -DNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 D + I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ Sbjct: 827 PDGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++ S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003] gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 1169 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 491/1060 (46%), Positives = 673/1060 (63%), Gaps = 51/1060 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VH+ YSLLEGA+ + ++ A PAIA+TDTN +F+ALEFS A Sbjct: 1 MSD-PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+ + + + G+ P P +VLL GY L++L S +Y +D+ Sbjct: 60 AGLQPIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKLSSCLY-VDK 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q ++ L L E EGLI L+GG+ GP+ + + + A + + RLYV Sbjct: 114 GGQLPQVTLEDL-EAHAEGLICLSGGAEGPVGKLLQHSQAGKARLLMERLAACYPTRLYV 172 Query: 185 NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH G +R E V++AY LPLVATN+ F + YEAHD ++ +A Sbjct: 173 ELQRHPGEGGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEG 232 Query: 238 TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + R R+TP HYLK +EM ++F+DLPEALENTVEIA+RC+F Sbjct: 233 AYVDQIEPRRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRK------- 285 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +E ELR +A GL RLA I +Y +RL FEL +I +M F GY Sbjct: 286 -PILPRFADDEVEELRRQAWEGLRARLA--VIPHAVPVAEYEERLKFELGIIEQMGFPGY 342 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+W K IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP Sbjct: 343 FLIVADFIKWGKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQM Y VD+L Sbjct: 403 DFDIDFCMDRREEVIKYVQGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLS 462 Query: 477 KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP + PVS++ +AD+ R REA ++ V RLL +Q +EGL R+ASTHAAG+VIG Sbjct: 463 KMIPVEGVKPVSIEKALADEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIG 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 DRPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G Sbjct: 523 DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRP 582 Query: 596 VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 + ++LIP DD +TY L T+ +FQ+ES+GM AL M+P Sbjct: 583 LHVNPLGETLYTPAEGAANEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKP 642 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 CIEDI+ALV+LYRPGP++NI Y K+G + S+HP IDP+LKETQG+I+YQEQVMQ Sbjct: 643 TCIEDIVALVALYRPGPMENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQ 702 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKF 756 IAQ+++GYSL AD+LRRAMGKKI EEM K++ +FI GA + I A +F+LL KF Sbjct: 703 IAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKF 762 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQ 815 A+YGFNKSHAAAYA++SYQTAW+K ++PVEF+A M ++ +K+ + +AR+ I+ Sbjct: 763 ANYGFNKSHAAAYAIVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIE 822 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 ++PP VN F V D ++ Y+L A+K VG R I +A DKPF L +F R D K Sbjct: 823 VVPPCVNRSLATFDVVDQKLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLK 882 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 ++ +R LE L AGA D +R ++ +SL+++ ++ V + +++ ++F E G Sbjct: 883 RIGKRPLEMLARAGAFDKLDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLFG-EAGDDL 941 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-- 993 L R E + +GFY SGHPLD Y P L++ + + A G Sbjct: 942 PPPRLADTDDWLPGERLAEEHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQGP 1001 Query: 994 -NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++A V ++ ++K+ KG+R +V+ S+P YE F Sbjct: 1002 FIGKIAGQVAARSERKSAKGNRFAFVSLSDPTGPYEVTVF 1041 >gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter antarcticus 307] Length = 1172 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 490/1061 (46%), Positives = 668/1061 (62%), Gaps = 48/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ H+ YSLLEGA+ + I PA+A+TDTNNLF ALEFS+ A Sbjct: 1 MAD-PRFIHLRTHTEYSLLEGAVPVKKICALAEKFDMPAVAVTDTNNLFCALEFSEYAAK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ + + P P P IVLL GY L++L S YL Sbjct: 60 AGVQPIIGCQIDLGLSADEPAQRNHTRPEPPAP-IVLLAQNEAGYMNLMKLNSCAYLDAD 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G Q +I + L + G+I L+GG GP+ R AE + +F DRLYV Sbjct: 119 G-QLPQISIDDLAMY-SGGVICLSGGPDGPVGRLLRAGQRPAAEALMAQLAAIFPDRLYV 176 Query: 185 NLQRH----RGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH + S+ V++AY +LPLVATN+ F YEAHD L+ +A Sbjct: 177 ELQRHPVDGGLPEAEHLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGA 236 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F + Sbjct: 237 YVDQNEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRD-------- 288 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E +EL+ +A AGL RL I +DY +RLDFEL +I M F GYF Sbjct: 289 PILPKFADNEIDELKRQAHAGLTDRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 347 LIVADFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K Sbjct: 407 FDIDFCMDRREEVIRYVQGKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS+ +AD+ R RE + VDRLL Q+LEGL R+ASTHAAG+VIGD Sbjct: 467 MIPVEGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGD 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 R L +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G + Sbjct: 527 RSLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDL 586 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L T+ +FQ+ESSGM AL M+PD Sbjct: 587 HTGPMGAELYVPATGTINDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPD 646 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDIIALV+LYRPGP++NI + KNG + +HP ID +L ETQG+I+YQEQVMQI Sbjct: 647 CIEDIIALVALYRPGPMENIPKFCEVKNGLSEREKLHPSIDHILDETQGIIVYQEQVMQI 706 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKK++E MD +K +F++G+ ++G+ K A+ +++LL KFA+ Sbjct: 707 AQEMAGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSLEHGVDKKKAMEVWDLLDKFAN 766 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + Sbjct: 767 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWS 826 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK--PFDSLEDFCSRVDS 874 PP VNT F V + + Y L A+K VG I++A A+ PF +L D RVD Sbjct: 827 PPCVNTSLATFDVQNGTLVYGLGALKNVGVDAMGLIVDARLAEGMSPFSTLFDLARRVDI 886 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K++ +R LE L AGA D +R ++ SLD + Y+ + + + + ++F E G Sbjct: 887 KRVGKRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHEQKNSNQVSLFG-EAGDD 945 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGN 993 + L + R E + +GFY SGHPLD Y L++ + +E A G Sbjct: 946 LPEPRLSAVQDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAAGG 1005 Query: 994 NI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++A V +Q++K+ +G+R +V S+P +YE F Sbjct: 1006 AMVCKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1046 >gi|324998887|ref|ZP_08119999.1| DNA polymerase III subunit alpha [Pseudonocardia sp. P1] Length = 1185 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 357/1075 (33%), Positives = 549/1075 (51%), Gaps = 59/1075 (5%) Query: 5 LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + S SFVHL H+ +S+L+GA L+++ + + A+A+TD N++ A EF +KA Sbjct: 1 MASSGAGSFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRL 112 AAG++PIIG + + + K P + LL EG L Sbjct: 61 KAAGVKPIIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S L + R+ L++ GT GLI TG SG + R + + A + Sbjct: 121 FRLSSLASL-EGYYYKPRMDRELLEQYGT-GLIGTTGCPSGEVARLLQQDDFEGACQAAS 178 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG D + L H ++ + + L +LP +ATN+ + +D +AH+V Sbjct: 179 DYRDIFGKDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEV 238 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVH 288 L+ V ++ +R + + + + D A +NT+ +A RC Sbjct: 239 LLCVQTGKTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTG 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + P+ E + EE+ L + GL R G + YR + ++E+ VI Sbjct: 299 QDLQPKAPVPEGE----TEESWLIKEVERGLHDRFPNG------ITEQYRTQANYEVGVI 348 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M + GYFL+ AD I+ AK I GPGRGS AGS+ AY L ITD+DP+R L+FERFL Sbjct: 349 IKMGYPGYFLVTADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFL 408 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQ 466 NPDR+SMPD D+DF + RR E+IRYV KYG +R+AQIIT+ +++AKAA++D R Q Sbjct: 409 NPDRVSMPDIDMDFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQ 468 Query: 467 MPYSQVDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517 YS DR+ K +P + S + ++ + R ADP V +++ ++ Sbjct: 469 PGYSVADRISKAMPPAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARG 528 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R HAAG+++ PL ++P+ R +TQF+M E GL+K DFLGL+ Sbjct: 529 LEGLKRQWGVHAAGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLR 588 Query: 578 TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT+L +L+ + +VDL + DD TY LL+ TLG+FQL+ MR L M Sbjct: 589 NLTILDDALENITLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMA 648 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 P E I A+ +LYRPGP+ + Y +RKNG+++I IHP + LK+ T G+I+ Sbjct: 649 PSEFEHISAVGALYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIV 708 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G NG S ++ Sbjct: 709 YQEQVMSIAQVLAGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLW 768 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L F+DY FN++H+AAY V+SY TA++K +YP E++A +T D+ +K + + R Sbjct: 769 DILLPFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECR 828 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869 + + ++PP VN +F N I + L I+ VG I+ A F DF Sbjct: 829 RMGVTVLPPDVNDSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFL 888 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +VD+ N++V+ESL+ AGA D G+SR LL + +K + ++F Sbjct: 889 RKVDAVVCNKKVVESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGS 948 Query: 930 EKGTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 G+ D + + + +S + E+ +LG Y SGHPL + L Sbjct: 949 MDGSGGDDGDELGGIFDVKVPE-EEWDSKHKLAVEREMLGLYVSGHPLQGLEQALAAKAD 1007 Query: 981 KGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + V G + + ++ + ++ + G + A E FFP Sbjct: 1008 TSIADIVEGSVAEGGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1062 >gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] Length = 1177 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL +GL+ L+G G I A + + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QL+ S+ + A E N +F + L + Sbjct: 886 GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62] Length = 1169 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 488/1056 (46%), Positives = 671/1056 (63%), Gaps = 51/1056 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL++H+ YSLLEGA+ + + PA+A+TDTNN+F ALEFS+ A +GIQP Sbjct: 5 RFIHLRLHTEYSLLEGAIPVKKLPQMCINADMPAVAVTDTNNMFCALEFSEGAAKSGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGCQ+D+ QG+ P P +VLL GY L++L S Y+ D G Sbjct: 65 IIGCQIDLTYD----QAEQGQREKPPAP-LVLLAQNETGYANLMKLNSCEYI-DAGGALP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 ++ L L++ ++GLI L+GG +GP+ + A+ + + +RLYV LQRH Sbjct: 119 QVSLEELEQY-SDGLICLSGGPNGPVGQFLQQGQGPKAQALMTRLAATYPNRLYVELQRH 177 Query: 190 RG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQ 242 G ++ E+ ++ +AY LPLVATN+ F E YEAHD L+ +A Q Sbjct: 178 PGDGGLPDNEQRTETALIDMAYAMGLPLVATNDVYFPKPEIYEAHDALICIAEGAYVDQQ 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + R R+TP HY K+ EM+++F+DLPEA+ENT+EIARRC+F Sbjct: 238 EPRRRLTPQHYFKSPQEMITLFADLPEAVENTIEIARRCAFKAYKRD--------PILPK 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +E ELR +A AGL+ RLA I ++Y +RLDFEL++I M F GYFLIVAD Sbjct: 290 FADDEVEELRRQAHAGLKDRLA--VIPHAVTVEEYEKRLDFELDIIEGMGFPGYFLIVAD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K N IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDF Sbjct: 348 FIKWSKDNAIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVD L K+IP + Sbjct: 408 CMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDSLSKMIPVE 467 Query: 483 PAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 PVS+ +AD+ R REA + VDRLL Q++EGL R+ASTHAAG+VIGDRPL Sbjct: 468 GVKPVSIVKALADEPRLREAAQNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDA 527 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597 LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + + Sbjct: 528 LVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSNRSIHVAAD 587 Query: 598 --------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ IP DD +Y L + T+ +FQ+ES+GM AL M+PDCIEDI Sbjct: 588 GAELYTPANGTENDINAIPLDDDASYKLYASAKTVAVFQVESTGMMDALRRMKPDCIEDI 647 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IALV+LYRPGP++NI + KNG +HP ID +L ETQG+I+YQEQVMQIAQ ++ Sbjct: 648 IALVALYRPGPMENIPKFCEVKNGLSDRDLLHPTIDHILDETQGIIVYQEQVMQIAQEMA 707 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 YSL AD+LRRAMGKKI+E MD +K +F+SG+ +NG+ + A +++LL KFA+YGFNK Sbjct: 708 NYSLGGADLLRRAMGKKIQEAMDAEKPKFLSGSKENGVDEKKAKEVWDLLDKFANYGFNK 767 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVN 822 SHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + Q+ ++ + PP VN Sbjct: 768 SHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPYSPPCVN 827 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVDSKKLN 878 F V D + Y+L A+K VG R + + ADKPF ++ D RVD K++ Sbjct: 828 RSQATFDVVDGTLVYALGALKNVGVEAMRMMTDGRMVEGADKPFANVFDMARRVDLKRVG 887 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R LE L AGA D +R ++ SLD + Y+ + R + ++F E G + Sbjct: 888 KRPLEMLARAGAFDQLDPNRRRIFDSLDALTNYSAAIHDQRGSNQVSLFG-EAGDDLPEP 946 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIR 996 L + + R E + +GFY SGHPLD Y P L++ G ++ A ++ Sbjct: 947 RLSPVTDWLPAERLAEEFKAIGFYLSGHPLDDYMPALKRKGALTLDDVMLKAERGACVVK 1006 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A V +Q++K+ +G+R +V S+P ++E F Sbjct: 1007 MAGTVSGRQERKSARGNRFAFVQLSDPTGQFEVTMF 1042 >gi|296274562|ref|YP_003657193.1| DNA polymerase III subunit alpha [Arcobacter nitrofigilis DSM 7299] gi|296098736|gb|ADG94686.1| DNA polymerase III, alpha subunit [Arcobacter nitrofigilis DSM 7299] Length = 1180 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 382/1066 (35%), Positives = 598/1066 (56%), Gaps = 49/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F HL +H+ YSLL+GA + ++ KI A ++A+TD N+F A++F + A Sbjct: 1 MSQIPEFTHLHLHTEYSLLDGANKIKDLAKKIKALGMKSVAMTDHGNMFGAIDFYKAMKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I + L + L GY+ L+ L S+ Y+ Sbjct: 61 EGIKPIIGMEAYIHNSEEL-----DDKSHRKRFHLCLYAKNQVGYKNLMFLTSQAYMHG- 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174 RI L+E +EGL+ G ++ + A++ L + Sbjct: 115 FYYYPRINKKILRE-NSEGLVCSAACLQGEVNWHLNTQSERNVKNGAKGYEEAKRIALEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 K++FGD Y+ + RH D++ + Q+++++ + +VATN++ +L ++D +AH+ M Sbjct: 174 KEIFGDDFYLEIMRHGISDQHFIDDQILRISKETGIKVVATNDTHYLKQKDAQAHEAFMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 +A + + +R R + + YLK+ ++ +++D+PE + T EI +C+ +++ P Sbjct: 234 IAMNKLYDDPNRLRHSVHEFYLKSSEQISKLYADIPETIAATQEIVEKCNLEIKLGDPTP 293 Query: 293 PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 P F E E + + ++ ++ GLE RL I Q+Y+ Sbjct: 294 PNFKFTREKSQEEGLTLPEPELEYSLENDKILFVHECWKGLEKRLE---IVPQERHQEYK 350 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 RL E+++I MKF GY LIV DF+ AK+ IPVGPGRGS AGS+ A++L ITDIDPL Sbjct: 351 DRLQVEIDIINSMKFPGYMLIVWDFVIAAKQMKIPVGPGRGSAAGSLVAFSLAITDIDPL 410 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV KYG VAQIITFG L AK + Sbjct: 411 PYGLLFERFLNPERVSMPDIDMDFCQARRQEILDYVIEKYGRANVAQIITFGKLLAKGVI 470 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 RDV R L MPYSQ D + KLIP++ ++ + + +E ++P R+ + + L Sbjct: 471 RDVARVLDMPYSQADAMAKLIPDELGINLTSS-YEKEPKIKELCDSNPQAKRVWDFAIAL 529 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A THAAG+VI + PL P+++ + TQ+N K++E LIKFDFLGLKT Sbjct: 530 EGLNRNAGTHAAGVVISNEPLWNKTPLFKPSGMETLATQYNGKYVEDVDLIKFDFLGLKT 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT+++++ + QR +V+ + +D Y L+ T T+G+FQ+ES GM+ + ++P Sbjct: 590 LTVIEEANKLIEQRHGKRVNFLTVDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649 Query: 638 DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIY 691 EDIIA+++LYRPGP+++ + + +RK+G+E+I + + P+L+ T GVI+Y Sbjct: 650 SNFEDIIAVLALYRPGPMESGMLDDFIDRKHGREEINYFYDEFDAPLRPILETTYGVIVY 709 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI Q + G+SL AD++RRAMGKKIKEEMD+ K F G K G K +F+ Sbjct: 710 QEQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFAIGGVKKGFVKEHCEELFD 769 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+ + ++ Sbjct: 770 LIVKFAGYGFNKSHSAAYALVTFYTSYLKKYYPSEFMAALLTLEKDNTDKVVKYVDEVKR 829 Query: 812 FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 + + PP +N + F G + + + AIKG G + I++ + F+ Sbjct: 830 LKLDLFPPDINKSDLVFAPKKIDGQEVVMFGMGAIKGAGDVAIKSILKERNENGNFEDFA 889 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF SRVD K+N+RV ESL AG D FGYSR +L+ ++ I + + ++ Sbjct: 890 DFISRVDGSKVNKRVFESLAKAGGFDTFGYSRRSILEQIETINETVGKAMAAKKMATGSL 949 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 F K ++ LEKF E E++ LGFY SGHPLD Y+ L + E Sbjct: 950 FGDSKELTKVEVQLEKFEEYELKELLELEKQSLGFYVSGHPLDEYREQLDGINYTLSSEL 1009 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G+ V + ++ ++KG++ + + E F Sbjct: 1010 EDLGDGSEALFIGKVETINERISKKGNKFAILNLMDLHGNIELMLF 1055 >gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter sp. GAI101] Length = 1177 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 489/1068 (45%), Positives = 680/1068 (63%), Gaps = 58/1068 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F+HL+ HS YSLLEGAL L + D + PA+A+TDTNN+F+ALEFS Sbjct: 1 MAHTPRFIHLRTHSEYSLLEGALRLKKLPDLCKSAGMPAMALTDTNNMFAALEFSIAMSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPIIGCQ+D+ G+ P P +VLL + GY+ L++L S +Y+ D+ Sbjct: 61 AGVQPIIGCQVDLAY----VQAQPGEKPRLPAP-VVLLAQSEPGYENLMKLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + L L+ + + G+I LTGG+ GP+ + + AE + FGDRLYV Sbjct: 115 GGALPEVTLDQLESL-SAGIICLTGGAGGPVGQLLQTGQAPAAEALMKRLHGAFGDRLYV 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY +PLVATN+ F YEAHD L+ +A Sbjct: 174 ELQRHPGENGQPEAERLTERGFVEMAYAMGIPLVATNDVYFPKTSMYEAHDALICIADGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+DR R+T HY K++SEMV++F+DLPEA++NTVEIA+RC+F+ + Sbjct: 234 YVDQQQDRRRLTAQHYFKSQSEMVTLFADLPEAIDNTVEIAKRCAFMAY--------RRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E EL+ +A GL+ RL I +DY +RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATSVEDYEKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R R+ + V RLL+ Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLRDEARNEEVVARLLDYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G + Sbjct: 524 RPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGTELFAPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ S+HP ID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGIKERESVHPSIDHILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R + + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873 PP VN FKV + + Y+L A+K VG + I + D+PF +L D RVD Sbjct: 824 PPCVNRSDAMFKVVEGALVYALGALKNVGVEAMKLITQGRKIEGVDRPFATLFDLARRVD 883 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 K++ +R LE L +GA D +R ++ +LD + Y+ + + + + ++F E G Sbjct: 884 LKRVGKRPLEMLARSGAFDQLDNNRRRVWNALDGLVSYSAAIHEQKASNQVSLFG-EAGD 942 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV 987 + + ++ R E + +GFY SGHPLD Y +++ +E Sbjct: 943 DLPEPRILPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSASGGVPFLTLDELT 1002 Query: 988 ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 EKVSIKGAMNARLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050 >gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015] gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015] Length = 1175 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 427/1060 (40%), Positives = 614/1060 (57%), Gaps = 52/1060 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL++H+ YSL++ + + ++ A PA+A+TD NLF+ ++F A AAGI Sbjct: 2 SSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 + + G L + +D P ++LL GY+ L ELVS+ Y Q Sbjct: 62 KALFGADLLVRNED----------PKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQAGG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I +WL E TEGLI L+GG G I RA FN + L +K+ F +R Y+ LQ Sbjct: 112 LPVIERTWL-EGRTEGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLELQ 170 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + V LA H+LP+VATN+ F+ +D+++H+V + + ++ R Sbjct: 171 RTGREGEALYNETAVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDPRRS 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R +P+ YL++ EMV +FSDLPEA+ENT+EIA+RC+ + LP + + + I Sbjct: 231 RHYSPEQYLRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGETI-- 288 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIV 360 ++ R ++ GLE R+ + G + YR RL+ E+ VI M F GYFLIV Sbjct: 289 --DSFFRKQSQEGLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYFLIV 346 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+ Sbjct: 347 ADFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPDFDV 406 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC + RD VI YV KYG ++V+QIIT+GS+ AKA +RDVGR L Y VD + KLIP Sbjct: 407 DFCMEGRDRVIDYVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAKLIP 466 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +S QA+ + ++ D V LL+++ KLEGL R+A HA G+VI L+ Sbjct: 467 MEVGITLS-QALEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPSKLT 525 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVK 595 P+Y + VTQF+ +E GL+KFDFLGL+TLT++ +L + R Sbjct: 526 DFTPLYCEEGGGGLVTQFDKDDVEAIGLVKFDFLGLRTLTIINWALKEINSRLEAAGHPL 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD T+ LL + T +FQLESSGM+ ++ +QPD EDI+ALV+L+RPGP+ Sbjct: 586 LDIDAIPLDDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRPGPL 645 Query: 656 DNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 D+ + + RK+G++++ HP + P+L+ T G+I+YQEQVMQIAQ++ GYSL Sbjct: 646 DSGMVDDFIRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQKE F+ G NGI ++A NIF+L+ KFA YGFNKSH+AA Sbjct: 706 GADLLRRAMGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSHSAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQTAW+K HYP F+AA ++ + DN +K+ ++ R + I+PP VN+ F Sbjct: 766 YALVSYQTAWLKAHYPSAFMAAVLSADSDNTDKVVNLIEECRNMGLTILPPDVNSSAYKF 825 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + D++ I Y L A+KGVG I E A+ + L DFC R+D +KLNRRV E+L+ Sbjct: 826 TMQDDKTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTEALI 885 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSV 945 GALD G +R L+ +L + A +KN+ +IF + + + Sbjct: 886 RGGALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPLIKE 945 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN----------- 994 + + E+ VLG Y +GHP + + L + K V + Sbjct: 946 WHEDDKLRAERDVLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGDDFRAR 1005 Query: 995 ---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +A +VV Q K+ G+ + VT + + Sbjct: 1006 AISATVAGLVVDVQSKRFGNGNELLIVTLDDRTDRVDLTL 1045 >gi|284991667|ref|YP_003410221.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM 43160] gi|284064912|gb|ADB75850.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM 43160] Length = 1185 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 372/1072 (34%), Positives = 558/1072 (52%), Gaps = 56/1072 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S SFVHL VH+ YS+L+GA L + A PA+A+TD N+F A +F ++A AA Sbjct: 4 PSSDSFVHLHVHTEYSMLDGAAKLPEVTKAAAEQGMPALAMTDHGNVFGAYDFYKQAKAA 63 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQG--------------KTPFPTVPSIVLLVSTAEGYQR 111 G++PIIG + + LL T EG Sbjct: 64 GVKPIIGMEGYYTPGSRFDRAPFDFGENLIDEDGEGGSSRGKAAYTHMTLLARTTEGMHN 123 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L + S L Q + R L+ GT GLI TG SG ++ A + Sbjct: 124 LFRISSMASLEGQ-YRKPRFDRDLLERYGT-GLIATTGCPSGEVNMWLRAGKHDRARQAA 181 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG + Y + H ++ ++++A +PL+ TN+ + ED EAHD Sbjct: 182 ADFQDIFGKENFYAEVMDHGLAIEKKTRPALLEIAKELGIPLLGTNDLHYTHREDAEAHD 241 Query: 230 VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 L+ + + +++ +R + D +YLK+ +EM ++FS+LPEA +NT+ +A +C Sbjct: 242 ALLCIQTGSRLNETNRFKFNGDGYYLKSAAEMRALFSELPEACDNTLLVAEQCEVEFTEG 301 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 A ++PRF +D E + + GL R G R++ D+E+ +I Sbjct: 302 ADLMPRFPLPPGED----ETSWFIKEVERGLHKRWPGG------IPDHVRKQADYEVGII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DPL L+FERFL Sbjct: 352 TQMGFPGYFLVVADFINWAKDNGIRVGPGRGSAAGSLAAYAMGITDLDPLAHGLIFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF RR EVI+YV KYG ERV+QI+T+G+++AKAA++D R L P Sbjct: 412 NPERVSMPDVDIDFDDRRRGEVIQYVSQKYGEERVSQIVTYGTIKAKAAIKDAARVLDRP 471 Query: 469 YSQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 YS D L KL+P D P+S + + FR +DP +++ ++KLE Sbjct: 472 YSVGDELTKLMPPDVMGKGIPLSGVFDPAHPRYKEAAEFRARYESDPGAAEVVDQARKLE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HAAG++IG PL +P+ R +TQF+ E GL+K DFLGL+ L Sbjct: 532 GLKRQWGVHAAGVIIGRYPLIDSIPIMRREADGAVITQFDYPTCETLGLLKMDFLGLRNL 591 Query: 580 TLLQKSLDF---LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 T++ +L + + +D D TY LL+ TLG+FQ + MR L M+ Sbjct: 592 TVIDDALRNIVANGKEPIDLDEISKDLTDPATYALLSRGDTLGVFQFDGGPMRSLLRLMR 651 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690 PD EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP + L++ T G+I+ Sbjct: 652 PDNFEDISAVGALYRPGPMGANSHTNYALRKNGQQEITPIHPELAEPLEDILGTTYGLIV 711 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ ++GYSL +AD+LRRAMGKK K +D + F +G + G S ++ Sbjct: 712 YQEQVMAIAQKVAGYSLGKADLLRRAMGKKKKSVLDAEFVGFEAGMKERGFSDAAIKTLW 771 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FADY FNK+H+AAY ++SY TA++K +YP E++A +T D+ ++ + + R Sbjct: 772 DILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDRRPIYLAECR 831 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869 + I+++PP VN DF I + LA+++ VG I A + F DF Sbjct: 832 RMGIKVLPPDVNESSWDFTAVGTDIRFGLASVRNVGHNVVDSIRRAREEKGAFKDFADFM 891 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++D+ N++V+ESL AGA D G+SR ++ A +++ ++F Sbjct: 892 RKIDTVACNKKVIESLAKAGAFDSLGHSRQGIVAVHAQAVDSAMALKRREAEGQFDLFGS 951 Query: 930 EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 +D + + S R E+ +LG Y S HPL + +L Sbjct: 952 FGDEGADDPFSGALDIAIPTADWSKSERLVFERDMLGLYVSDHPLHGVEHVLAANADTPI 1011 Query: 984 EESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E A G N+ +A ++ S + ++G+ T + E FFP Sbjct: 1012 AEINAGGVEDGANVTIAGILTSVAPRTNKQGAPWAIATLEDLESGIEVLFFP 1063 >gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2] gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2] Length = 1166 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 415/1055 (39%), Positives = 607/1055 (57%), Gaps = 41/1055 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++H+ YSL++G + + + +Q PA+A+TD +NLF+ ++F Q A Sbjct: 1 MTD-PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G L + T + LV GYQ L L+SR + +Q Sbjct: 60 AGIKPLMGADLWV-----------QGTHIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + WL E+ EGLI+L+ S G + + + A++ +GDR Y+ Sbjct: 109 DRGRALVKPEWLAEL-NEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYL 167 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR R D V LA LP+VATN+ FL ED+EAH+ + + + Sbjct: 168 EVQRTSRPGDEDCLHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + + YLK+ EM +FSDLPEALENTVEIARRC+ +++ LP F E Sbjct: 228 RRPKKYSEEQYLKSADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMT 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 I++ E + L+V L +DY RL FEL++I +M F GYFLIVAD Sbjct: 288 IEQYFEKVSHDGLEERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVAD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIQWAKDNEVPVGPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R PY DRL K+IP Sbjct: 408 CMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGV 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSV-----DRLLEISQKLEGLYRHASTHAAGIVIGDR 537 P +S +A+ + RE +D + + ++E++ KLEGL R+ HA G+VI Sbjct: 468 PGMTLS-KALEQEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPG 526 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-----LDFLAQR 592 L+ P+Y + VTQ++ +E AGL+KFDFLGLKTLT++ + + + Sbjct: 527 KLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREG 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + + IP DD ++ LL T +FQLES GM++ ++ ++PD EDIIALV+LYRP Sbjct: 587 LDDLVIDHIPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRP 646 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+++ +V N H ++P+LK + GVI+YQEQVMQIAQ L+GY Sbjct: 647 GPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGY 706 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM+KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH Sbjct: 707 TLGGADMLRRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSH 766 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+ F + + +Q++PP VN+ Sbjct: 767 SAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCG 826 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 F V + I Y L AIKG+G I+ A A+ F L DFC R+D KK+NRR LE Sbjct: 827 YRFTVNPEGDIVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLE 886 Query: 884 SLVFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 ++V AG LD G + R QLL +L + A +N ++F + + + Sbjct: 887 AMVRAGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAV 946 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + N R E+ LG + +GHP+D Y+ +++ T +G +A Sbjct: 947 EWKPARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVA 1006 Query: 999 AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 +VV+ + ++++ G R+ ++T + E + F Sbjct: 1007 GLVVALRITRSKRSGERMAFITLDDKTGRVEVSVF 1041 >gi|269837330|ref|YP_003319558.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] gi|269786593|gb|ACZ38736.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] Length = 1167 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 361/1050 (34%), Positives = 555/1050 (52%), Gaps = 45/1050 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F HL +H+ +SLL+G + + + + IAITD ++ +++ + A A Sbjct: 1 MTARP-FAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 + PI+G + + Q ++LL GY+ L+ L SR L + Sbjct: 60 HDLHPILGIEAYLAPGSIEDREKQS-------YHLLLLAENERGYRNLLRLASRASL-EG 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ L L + +G+I + GP+ F + A + K++FG D Y Sbjct: 112 FYYKPRVDLDMLNSL-RDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFY 170 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H R Q+++LA +LPLVATN+ ++ + D ++L+ + +T + Sbjct: 171 IEIQDHGIEGQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHD 230 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R+ + Y K+ EM +F ++PEALENT+ IA RC+ L+ LP E Sbjct: 231 PKRLRMESDQLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGM 290 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 L G+ R + ++ R+RL++EL+VI FS Y LIV Sbjct: 291 ----TPHEYLCQLCWDGVRRRYPE-------VTEEVRRRLEYELDVIQETGFSSYMLIVR 339 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF ++A++ I G RGS A S+ Y L ITDIDPL L+FERFLN +R MPD D+D Sbjct: 340 DFAEFARQRRISFG-VRGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMD 398 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR EVI YV +KYGH+RVAQIITFG++ AKAA+RD GRA+ Y+ VDR+ +LIP+ Sbjct: 399 FADNRRAEVIDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPS 458 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + R+ DP+ L++ +++LEG+ RHA THAAG+VI PL + Sbjct: 459 TLNITLD-KALQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVE 517 Query: 542 LVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 +P+ R R++ P TQF M+ + + GL+K DFLGL LT+L ++++ + Q V++D Sbjct: 518 HLPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVEID 577 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP D +TY +L+ T G+FQLES+GMR+ + ++P I ++ A+V+LYRPGP+ + Sbjct: 578 PKKIPDGDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH 637 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y K+G E I HP + +L ET GVI+YQ+QV+ IA+ +GY+L EAD++R+AM Sbjct: 638 IPTYCRAKHGLEPIRYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAM 697 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKI E M ++ERF+ GA + G S A N+F L+ FA Y FNK+HA YA ISYQT+ Sbjct: 698 GKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQTS 757 Query: 778 WMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 ++K +YP E++ A + + +++ + ++ I ++PP +N VDF++ Sbjct: 758 YLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEIL 817 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESL 885 I + LA +K VG I+ A P F+S E FC VD +NRRV ESL Sbjct: 818 EDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAESL 877 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKF 943 + GALD G R LL L+ AQ ++ ++F+ + Sbjct: 878 IKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDDV 936 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + E+ +LG Y S HPL+ P++R G E G I M+ Sbjct: 937 PEIPRATLLAWEKELLGLYLSSHPLNDLVPLIRDGGYVRLAEIDEETVGQQIEAIVMITG 996 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ T+ + + E FP Sbjct: 997 MRKLTTKTNRVMAICQLEDQTGAIEMVVFP 1026 >gi|187734882|ref|YP_001876994.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC BAA-835] gi|187424934|gb|ACD04213.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC BAA-835] Length = 1174 Score = 750 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 398/1056 (37%), Positives = 578/1056 (54%), Gaps = 44/1056 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---------SQ 60 SFVHL H+ YSLL+GA+ + +++ + + PA+A+TD NLF A+E S Sbjct: 4 SFVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSV 63 Query: 61 KA---------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 A ++PI GC++ + ++LL G+Q Sbjct: 64 AAWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRR--KYTHLLLLAENETGWQN 121 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++LVSR +L + R+ + L+E EGLI T +GP++ + + AE+ L Sbjct: 122 LVKLVSRSHL-EGFYYKPRVDMETLREFH-EGLICCTACIAGPLNEWLLNDQPEKAEEAL 179 Query: 172 LTFKKLFGD-RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 L K +FGD ++V LQ H ++ + ++V++A P+VATN+ FL +ED++ HD Sbjct: 180 LALKDIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMHD 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 VL+ + + ++ R R + + YLK+ EM +F D PEA+ENT++IA RC+ +++ + Sbjct: 240 VLICIGTNEKLASPKRMRYSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLDS 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++ E E LR GLE R + +A ++ R RLD+EL +I Sbjct: 300 TSTEKYPE-FGTPDGSSREEYLRKVCYKGLEERYGKERVAAD---KELRDRLDYELGIIN 355 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++KF YFLI ADFI WAK ++IPVGPGRGS AGS+ AYA+ IT+IDPLRF L+FERFLN Sbjct: 356 QLKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFLN 415 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S PD DIDFCQ RR EVI YV+ KYG V+ IIT+G++ AK+ LRDV R + M Y Sbjct: 416 PERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMSY 475 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + DR+ KLI P + + + RE +D L + +LEGL R+ HA Sbjct: 476 ADGDRISKLIETGPKVTL-QSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVHA 534 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 AG+VIGDRPL + V + RD SD V Q +M I + GL+K DFLGLKTLT++ + Sbjct: 535 AGVVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDAE 594 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + R + L +P DD ET LL T+G+FQLES GM IEDII L Sbjct: 595 QYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDIIDL 654 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 ++LYRPG + + K G ++ HPL++ + ET GV+IYQEQV A+LL+GY+ Sbjct: 655 LALYRPGAMQFMDEMIEVKKGLRQVEYEHPLLEQVSGETYGVMIYQEQVQAAAKLLAGYT 714 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSH 765 L AD+LRRAMGKK +M K+K F+ G K + A IF+ + KFA YGFNKSH Sbjct: 715 LGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEKFAGYGFNKSH 774 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +A Y ISY TA++K H+PVEFL M+ E +N +KI F Q+A + I+I+PP VN Sbjct: 775 SACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIEILPPDVNKSM 833 Query: 826 VDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879 + F + Y LAAIK VG + ++E + F S+ED C+R+DSK +N+ Sbjct: 834 LKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDICNRLDSKSVNK 893 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 ++LESL+ AGALD R L + +D A V K++ ++F K Sbjct: 894 KILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDMTFEAPRVKDE 953 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG---YEESVATIRGNNIR 996 + R +E+ +LG YF GHPLD + ++ + + Sbjct: 954 -PAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDTLEPHELKQKHQ 1012 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A MV S K ++ G + +T + E + Sbjct: 1013 IAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLW 1048 >gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003] gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003] Length = 1199 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 402/1046 (38%), Positives = 606/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL++HS +S+ +G + L++++ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + WL+ EGL+ L+G G + A + + A++ L + K+F Sbjct: 111 NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R TP+ Y + + EMV++F+D+P AL N+VEIA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTPEQYFRTQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + + GLE RLAQ + + Y QRL+FE + +M F GYF Sbjct: 291 MSL----DDYLVHLSKQGLETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 KDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+M+L MD+ EK+K +D + ++PP +N F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTEKVKILFEDCIANKMTVLPPDINLSAYRFEPVAE 826 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A D F + DFC+R+D + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D Y+ +R+ + E +A +V S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIVASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGKMM-IALLDDGTGQCEVTVF 1025 >gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822] gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50] gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis] gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50] Length = 1163 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 396/1055 (37%), Positives = 603/1055 (57%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+ +G + +++++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++P+ G + + D+ + ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPVAGSDVWLTNDDDREKP----------FRLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +Q K + WLQ G EGLI+L+G G + +A ++ A + +LF Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL ++++AH+ + +A + Sbjct: 169 SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D YL + EM F+D+P AL NTVEIARRC+ L + P LP F Sbjct: 229 LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + ++ L + GLE L + Y +RL +E I +M F G Sbjct: 289 DGV----TLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +PA P + + + D+ F++ + V L+++++ LEGL R HA G++I Sbjct: 465 SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ F+ Q Sbjct: 525 APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ + DD Y +L T +FQLES GM++ L+ ++P EDIIA+++LY Sbjct: 585 ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + HP ++ L+ T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+ ++++PP VN F Sbjct: 765 YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 + ++ + Y L A+KG G I+ A PF +L DFC RV + Sbjct: 825 EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 885 NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQSSLFGDDSGDVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + N E+ LG+YFSGH D ++ +R++ + Sbjct: 943 -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + TR+G + + + + E + F Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033 >gi|300866715|ref|ZP_07111399.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp. PCC 6506] gi|300335315|emb|CBN56559.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp. PCC 6506] Length = 1257 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 379/1086 (34%), Positives = 586/1086 (53%), Gaps = 71/1086 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +HS YSLL+GA L ++D+ PAIA+TD ++ A+E + I P Sbjct: 2 SFVGLHIHSDYSLLDGASQLPPLIDRAVELGMPAIALTDHGVMYGAIELIKVCRNKNITP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125 IIG ++ + D K V+L +GY+ L++L + +L Sbjct: 62 IIGNEMYVVNGDISVKVKGRKK-----YHQVVLAKNTQGYKNLVKLTTISHLQGMPERGL 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ EGLI+ +G +G + R + + A K +K LFGD Y+ Sbjct: 117 FARPCINKELLEQYH-EGLIVTSGCRAGEVPRLIDLGNLEEARKVAKWYKDLFGDDYYLE 175 Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++ + +VATN+S F + D EAHD L+ + +V + Sbjct: 176 IQDHGFWEDRIVNIELVKIGKELGIKIVATNDSHFTACSDVEAHDALLCIQTGKLVEDEK 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + YLK+ EM +F D + ++ + + ++ + I Sbjct: 236 RMRYSGTEYLKSAEEMAQLFRDHLPDDVIKEAIANTLEVAGKIKKYEIFDEPRIPTYEIP 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + A GL R A + Y++RL++EL +I M FS YFL+V D Sbjct: 296 PDHTADTYVEYVAWQGLLERFK--AKERKEIKPVYKERLEYELKMIQDMGFSTYFLVVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I +A++NNIPVGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 354 YIDYARRNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RRD++I+YV KYG ERVAQIITF L +K+ L+DV R L +PY + D + KLIP Sbjct: 414 CIERRDDMIKYVTEKYGAERVAQIITFNRLTSKSVLKDVARVLGVPYKRADEMAKLIPVS 473 Query: 483 PAHPVSLQAIADD----SRFREARLADPSV--------------DRLLEISQKLEGLYRH 524 P L + + FR+A + + L+++ ++EG + Sbjct: 474 RGKPEKLAVMISEQTPAPEFRQAYEEETLQAKNNDGTEEKTIAVRQWLDMAIRIEGTNKT 533 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+VI +PL ++VP+ R+ +TQ+ M+ +E GL+K DFLGLK LT+LQK Sbjct: 534 YGVHAAGVVISAQPLDEIVPLQRN-NEGAVITQYYMEDLESLGLLKMDFLGLKNLTMLQK 592 Query: 585 SLDFLAQRGVKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLES 625 +++++ Q + D +TY LL GIFQLES Sbjct: 593 TVEYIKQTRDCDIDPEMLPSDIERKAQEAFVTCKKLPEDVSKTYKLLAKGDLEGIFQLES 652 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK 683 SGM ++ ++P C+EDI ++++LYRPGP+D I + +RK+G+E + HPL++P+LK Sbjct: 653 SGMLDVVKKLKPSCLEDISSILALYRPGPLDAGLIPQFIDRKHGRELVEYDHPLLEPILK 712 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G + +QEQ+M++AQ L+GYSL +AD+LRRAMGKK +EM KQ+E FI GA+KNG+S+ Sbjct: 713 ETYGTLCFQEQIMRVAQDLAGYSLGQADLLRRAMGKKKADEMQKQRETFIDGATKNGVSQ 772 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 IA +FE + +FA+Y FNKSH+ AYA ++YQTA++K +YPVE++AA +T + +K++ Sbjct: 773 RIAEKLFEQMLQFAEYCFNKSHSMAYAYVTYQTAYLKANYPVEYMAALLTANSGDQDKVQ 832 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIME 855 K+ + + I+I PP +N V F ++I + ++A+K +G + +I++ Sbjct: 833 KYIANCIKMGIEIEPPDINRSKVTFTPLPKQVTDAEIDKILFGMSAVKNLGDSAIENILK 892 Query: 856 ASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 A + F SL DFC RVD K +N R LE+L+ GALD +R QL+ LD + K+AQ Sbjct: 893 AREEGGNFKSLADFCERVDLKAVNSRALEALIQCGALDRLNSNRNQLMHDLDGVVKWAQD 952 Query: 915 VEKNRTNKHENI-------FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +K+R + N+ F ++ + + + E+ +LGFY S HP Sbjct: 953 RKKDRESGQGNLFDLLGMSFGETANSYDSIPKHKPVPDFDKQKKLSLEKELLGFYVSDHP 1012 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L + + + ++L MV + + T+K R+ + + + Sbjct: 1013 LKSVLLATQNEETVTVAQLADKKGKDVVKLIVMVTAIKLVTTKKNDRMAILQVEDLTGQL 1072 Query: 1028 EANFFP 1033 EA FP Sbjct: 1073 EAVVFP 1078 >gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383] gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383] Length = 1176 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL ++GL+ L+G G I A + + A + + K+F Y+ Sbjct: 110 YRGRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + +M ++F+DLP A+ NTVE+A+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ A+ Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WALAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+ NG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QL+ S+ + A E N +F + L + Sbjct: 886 GAFDSLNTNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + + E F Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022 >gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1158 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3] gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 1175 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 606/1044 (58%), Gaps = 40/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL +GL+ L+G G I A + + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QL+ S+ + A E N +F + L + Sbjct: 886 GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES---PHALVDEPAWDD 940 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 941 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 997 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 998 TQRGK-MLIALLDDGTGQCEITIF 1020 >gi|322689545|ref|YP_004209279.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp. infantis 157F] gi|320460881|dbj|BAJ71501.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis 157F] Length = 1189 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 343/1075 (31%), Positives = 544/1075 (50%), Gaps = 53/1075 (4%) Query: 1 LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E Sbjct: 1 MVERMADYGKNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + + + EG Sbjct: 61 TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 LI+ S L + + R+ L ++G+I +G SG I A Sbjct: 121 LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + F+ +FG D ++ L H + ++ +A PL+ATN+S ++ ED + Sbjct: 180 RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A D ++ + + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + Sbjct: 240 AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMF 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + +E + K GLE R G D ++ D+E Sbjct: 300 DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FE Sbjct: 352 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + Sbjct: 412 RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471 Query: 466 QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 +S +++ K +P +SL I D + FRE +DP R+ E + Sbjct: 472 GYEFSVGEKVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEA 531 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HA ++G P++ P+ + T F E GL+K DFLG Sbjct: 532 KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT++ +L + +D + IP DD ETY L++ TLG+FQL+S GMR L+ Sbjct: 591 LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++PD DI AL++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+ Sbjct: 651 LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + Sbjct: 711 IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + + Sbjct: 771 VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866 AR+ IQ++ P VN ++ + + + L AI+ VG I+ F + Sbjct: 831 ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R L + +++ + ++ Sbjct: 891 DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDL 950 Query: 927 FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F+ + ++ +T+ + + E+ +LG Y S HPL + IL + Sbjct: 951 FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010 Query: 982 GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1158 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 409/1043 (39%), Positives = 598/1043 (57%), Gaps = 38/1043 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL+VHS +S++ G + +++ A+ A+ +TD N ++F +A AGI+P Sbjct: 5 RFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + + + LL +GY + +++S+ Y + Sbjct: 65 IIGADVYV----------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYI-EFP 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL E+ EG+I+L+GG G + +A + Q AE+++ +++ + + Y+++ R Sbjct: 114 MVEREWLAEL-NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRT 172 Query: 190 RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D R Q V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ Sbjct: 173 GRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKK 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P Y + EM +F+DLP AL NTVEIA+RCS +++ + Sbjct: 233 YSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELST 287 Query: 308 ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLIV +FI Sbjct: 288 EDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP Sbjct: 408 DGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG 467 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +A A + + E AD V L+++++KLEG+ R+A HA G+VI ++ P Sbjct: 468 MTLE-KAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSP 526 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLS 599 +Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + Sbjct: 527 LYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIE 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ + Sbjct: 587 TISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGM 646 Query: 660 VYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N K H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+ Sbjct: 647 VQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK EEM Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++ Sbjct: 707 LRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALV 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ F V + Sbjct: 767 SYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNE 826 Query: 833 -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 I Y L AIKGVG I+ A + F L D +RVD KK+NRR ESL+ +GA Sbjct: 827 KGEIVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949 D G R L+++L++ K + K ++F T + + + Sbjct: 887 FDKLGPHRAALMKNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQ 946 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 V + E+ LG Y SGHP+ + L E T RG ++ +V++ + T Sbjct: 947 VILDGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVT 1006 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 ++GSRIG T + + + + F Sbjct: 1007 KRGSRIGIATIEDRSGKLDITLF 1029 >gi|330466901|ref|YP_004404644.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032] gi|328809872|gb|AEB44044.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032] Length = 1177 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 344/1061 (32%), Positives = 530/1061 (49%), Gaps = 44/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG+ P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVKRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 ++G + + + + + + G L +L S+ Sbjct: 64 VLGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWARNRVGLHNLFKLTSKA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Y + R+ L E +GL+ TG SG + A + ++ +FG Sbjct: 124 YTEGYFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLGHDAQALEAAAKYQDIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ L H ++ ++++ +P V TN+S + E EAHDVL+ V Sbjct: 183 KENYFLELMDHGLDIEKQVRDGLLEIGRKLNIPPVVTNDSHYTHEAQSEAHDVLLCVQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + V+ +R + Y ++ + + LE + + Sbjct: 243 SNVADPNRFKFGGSGYYIKSADEMRGVDNSDVWLEGCRNTLLVAEKVDPTGMFEFHNLMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + EE+ R + AGL R G +Y EL VI +M F YF Sbjct: 303 RFPVPEGETEESWFRKETFAGLARRFPNGIPEGHVVQAEY------ELGVIIQMGFPSYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+R+SMPD Sbjct: 357 LVVADFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L PY+ DR+ K Sbjct: 417 VDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476 Query: 478 LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +P + A+ R ++ V ++++ ++ +EGL R H Sbjct: 477 AMPPAVMGKDIPLEGIFDPKHPRYAEAGEIRGMYESEADVKKVIDTARGIEGLIRQTGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ P+ +P+ R + +TQF+ E GL+K DFLGL+ LT++ ++ Sbjct: 537 AAGVIMSAEPIIDHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKN 596 Query: 589 -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 G ++DL +P DD Y LL TLG+FQL+ MR L M+PD EDI A++ Sbjct: 597 IQLNHGKELDLLGLPLDDKGAYELLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVL 656 Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701 +LYRPGP+ D+ Y RKNG ++I IHP ++ LK T G+I+YQEQV + AQ+ Sbjct: 657 ALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLKEILAPTYGLIVYQEQVQRAAQI 716 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S ++++L FA Y F Sbjct: 717 LAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDDAIQKVWDVLVPFAGYAF 776 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ IQ++PP V Sbjct: 777 NKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 NT F I + L AI+ VG IM + + DF S+VD+ N++ Sbjct: 837 NTSAGPFTPVGKEIRFGLGAIRNVGANVVTSIMRCRQEKGEYADFYDFLSKVDAVVCNKK 896 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +ESL+ AGA D G+SR LL + V++ ++F G Sbjct: 897 TIESLIKAGAFDSMGHSRKGLLTVHADAIDAYADVKRKEAVGQYDLFGAGFGEAEVATNT 956 Query: 941 EKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992 + + + E+ +LG Y S HPL + IL G Sbjct: 957 QVMPTIGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHILGASADCTISALSEEGTVPDG 1016 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ Q++ T++G T + A E FFP Sbjct: 1017 AVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN] gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN] Length = 1192 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 403/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + WL+ EGL+ L+G G + A + + A++ L + K+F Sbjct: 111 NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGF 170 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRSGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + Sbjct: 231 NPRRSKRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE RL Q A + + Y RL+FE I +M F GYF Sbjct: 291 MSL----DDYLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++ +L+ET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ Sbjct: 827 PDGKRSKTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++ S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220] gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220] Length = 1144 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 412/1032 (39%), Positives = 602/1032 (58%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K AA PA+AITD NL ++F AGI+PI+G + Sbjct: 1 MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + + +L + GYQ L L+S+ Y G + I WL E+ Sbjct: 57 ------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVEL-K 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + R+ +S + ++ + +++ F + ++ L R D Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA T LP+VATN+ FL D++AH++ +A+ + RPR + Y+++ E Sbjct: 170 VELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEAL+NTVEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFSDIPEALQNTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDFLVAKSKEGL 284 Query: 320 E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E L + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K D++ IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ LSGY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA K G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++I+PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+R D KKLNRRVLE L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL + K A K ++F + + + V + E+ LG Sbjct: 884 NSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP++ Y + + G ++ T RG A +V++ + T++G+RIG T Sbjct: 944 YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEVMLF 1015 >gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1158 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 408/1048 (38%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + + + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 1201 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 44 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 102 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 103 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 152 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 153 V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYL 210 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 211 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 270 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 271 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 325 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 326 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 385 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 386 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 445 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 446 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 505 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 506 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 564 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 565 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 624 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 625 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 684 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 685 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 744 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 745 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 804 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 805 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 864 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 865 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 924 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 925 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 984 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 985 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1044 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1045 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1072 >gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae L20] gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1158 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax sp. DG881] gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax sp. DG881] Length = 1166 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 412/1055 (39%), Positives = 608/1055 (57%), Gaps = 41/1055 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL++H+ YSL++G + + ++ Q PA+A+TD +NLF+ ++F Q A Sbjct: 1 MSD-PRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G L + T + LV GYQ L L+SR + +Q Sbjct: 60 AGIKPLMGADLWV-----------QGTHIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + W+ E+ EGLI+L+ S G + + ++A++ ++GDR Y+ Sbjct: 109 DRGRALVKPEWVAEL-NEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYL 167 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR R D V LA LP+VATN+ FL ED+EAH+ + + + Sbjct: 168 EVQRTSRPGDEDCLHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + + YLK+ EM +F+DLPEALENTVEIARRC+ +++ LP F + Sbjct: 228 RRPKKYSEEQYLKSAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 I++ E + L+V L + +DY RL FEL++I +M F GYFLIVAD Sbjct: 288 IEQYFEKVSSDGLEERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIVAD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW K N +PVGPGRGSGAGS+ AYA+ ITD+DP+ + LLFERFLNP+R+SMPDFD+DF Sbjct: 348 FIQWGKDNEVPVGPGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDVDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R PY DRL K+IP Sbjct: 408 CMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGI 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSV-----DRLLEISQKLEGLYRHASTHAAGIVIGDR 537 P ++ +A+ + RE +D + + ++E++ KLEGL R+ HA G+VI Sbjct: 468 PGMTLT-KALEQEETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIAPG 526 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-----LDFLAQR 592 L+ P+Y + VTQ++ +E AGL+KFDFLGLKTLT++ + + + Sbjct: 527 KLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRGREG 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + + IP DD ++ LL T +FQLES GM++ ++ +QPD EDIIALV+LYRP Sbjct: 587 LDDLVIDHIPLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALYRP 646 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+++ +V N H ++P+LK + GVI+YQEQVMQIAQ L+GY Sbjct: 647 GPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGY 706 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH Sbjct: 707 TLGGADMLRRAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNKSH 766 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+ F + + +Q++PP VN+ Sbjct: 767 SAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCG 826 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 F V + I Y L AIKG+G I+ A AD F L DFC R+D KK+NRR LE Sbjct: 827 YRFTVNPEGDIVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRSLE 886 Query: 884 SLVFAGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 ++V AG LD G + R QLL +L + A +N ++F + + + Sbjct: 887 AMVRAGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPATAV 946 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + N R E+ LG + +GHP+D Y+ +R+ T +G +A Sbjct: 947 EWKPARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAATIA 1006 Query: 999 AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 +VV+ + ++++ G R+ ++T + E + F Sbjct: 1007 GLVVALRITRSKRSGDRMAFITLDDKTGRVEVSVF 1041 >gi|91792926|ref|YP_562577.1| DNA polymerase III subunit alpha [Shewanella denitrificans OS217] gi|91714928|gb|ABE54854.1| DNA polymerase III, alpha subunit [Shewanella denitrificans OS217] Length = 1159 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 407/1047 (38%), Positives = 598/1047 (57%), Gaps = 37/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + IL + AIA+TD NN ++F Sbjct: 1 MTD-PRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + Q + ++ ++ GYQ L +++S+ YL Q Sbjct: 60 AGIKPIVGADFWM----------QVPGFDKELCALTIIAMDNHGYQNLTQIISQAYLRGQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 V I WL +G+++L+G G + +A + + + ++ F R ++ Sbjct: 110 INGRVVIDQDWLVTY-NQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFL 168 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R V LA +LP+VATN +FL +D+E+H++ +A++ ++ Sbjct: 169 ELIRTGRSDEERYLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ + + YL++ EM ++FSD+P AL N+VEIA+RC+ ++++ Sbjct: 229 RRPKTYSAEQYLRSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYF-----LPNFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 E+ L + GLE RL + AQ +Y +RL EL VI +M F GYFLI Sbjct: 284 GDLSTEDFLVVVSEKGLEERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC DRRDEVI +V + YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P +P + +A + +E+ D V L+++ ++LEG+ R+A HA G+VI + Sbjct: 464 PAEPGMTL-AKAFEVEPALQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + + Sbjct: 523 TDFSPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLD 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + IP DD + + LL T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP Sbjct: 583 PIRIEAIPLDDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 643 LQSGMVDNFIERKHGREEVSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NGI +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI + + + ++PP VN Sbjct: 763 AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822 Query: 828 FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F V + I Y + AIKGVG I+EA + PF L DFC+RVD KKLN+R++E L+ Sbjct: 823 FTVDEAFNIVYGIGAIKGVGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945 AGALD G R ++ +L A K ++F D K + Sbjct: 883 CAGALDSLGPHRASMMATLPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMP 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + E E+ LG Y +GHP++ Y L++ ++ T RG + A +VV+ + Sbjct: 943 WPDKIWLEGERDTLGLYLTGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATR 1002 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G+++G VT + + E F Sbjct: 1003 VMLTKRGAKMGLVTLDDKSARLEVMLF 1029 >gi|296159171|ref|ZP_06841998.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] gi|295890732|gb|EFG70523.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] Length = 1193 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 405/1046 (38%), Positives = 607/1046 (58%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++++ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ + ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDREKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + I WL+ EGL+ L+G G + A + + A++ L + K+F Sbjct: 111 NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR + + Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIEVQRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+ L++ P LP F + Sbjct: 231 NPRRSKRFTPEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + + GLE RL Q A + + Y QRL+FE I +M F GYF Sbjct: 291 MSL----DDYLVHLSKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 QDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++ +LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKAEEMAEHRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAE 826 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A + PF + DFC+RVD + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F + S L Sbjct: 887 RAGAFDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDSPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++ S + Sbjct: 944 PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054] gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424] gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424] Length = 1177 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + +++I+ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL +GL+ L+G G I A + + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q LA + +LP+VAT+ + F++++D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D Y + + EM ++F+DLP A+ NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y +RL+FE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ + +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAE 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D N+ ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L A+KG G I+ A +K F L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QL+ S+ + A E N +F + L + Sbjct: 886 GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + + +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022 >gi|154509031|ref|ZP_02044673.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC 17982] gi|153798665|gb|EDN81085.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC 17982] Length = 1180 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 349/1064 (32%), Positives = 551/1064 (51%), Gaps = 46/1064 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG+ Sbjct: 2 ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61 Query: 68 QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +PIIG + + + + + L+ G L L Sbjct: 62 KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R L + EGLI+ TG SG + A + Sbjct: 122 SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180 Query: 177 LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG + YV + H +R QV+++A PLVATN++ ++ ED + D L+ + Sbjct: 181 IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240 Query: 235 AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ DR + D +Y+++ EM +++S+LP A ++T+EIA RC Sbjct: 241 NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ +++ + + GL R G D R++ +E +VI +M F Sbjct: 301 -YMPDFPVPEGEDKTSWFIKEVERGLRDRFPNG------IPDDVRKQAQYEEDVIIKMGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL VAD+I WAK I VGPGRGSGAGS+ AYAL IT+++PL L+FERFLNP+R+ Sbjct: 354 PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNPERI 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L + + Sbjct: 414 SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473 Query: 474 RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 +L K P +++ I D+ FR+ +P +++ + LEGL R Sbjct: 474 QLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGLTRQ 533 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL+ LT++ Sbjct: 534 WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ +A DL + FDD +TY LL TLG+FQL+ GMR L+ M+PD EDI Sbjct: 594 ALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNFEDI 653 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697 A+ +LYRPGP+ ++ Y RKNG+++I IHP + L++ T G+I+YQEQVMQ Sbjct: 654 SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQVMQ 713 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F G NG S+ +++++ F+ Sbjct: 714 IAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVVPFS 773 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNK+H+AAY ++SY TA++K ++P E++AA +T DN ++ + + R +I ++ Sbjct: 774 AYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN +F I + L AI+ VG I+E A+ F S +DF +V Sbjct: 834 PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVPQVV 893 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 894 CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGEDEDT 953 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---AT 989 I + + + E+ +LG Y S HPL + L + + V Sbjct: 954 GSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSDGA 1013 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++A ++ K T++G+ T + + + FFP Sbjct: 1014 MADRIVKIAGLISGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057 >gi|71279814|ref|YP_268312.1| DNA polymerase III subunit alpha [Colwellia psychrerythraea 34H] gi|71145554|gb|AAZ26027.1| DNA polymerase III, alpha subunit [Colwellia psychrerythraea 34H] Length = 1186 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 419/1059 (39%), Positives = 605/1059 (57%), Gaps = 50/1059 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 P F+HL+VHS YS+ +G + I+ K PA+A+TD NL +++ A AGI Sbjct: 17 PPKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGI 76 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIGC + + + IV+L + GY+ + EL+S+ Y+ + Sbjct: 77 KPIIGCDFWV----------KSDELEDELSRIVVLTTNNVGYKNITELISKAYMRGHIQN 126 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I SWL E EGLI+L+GG G I +A ++++ ++ + +++ F ++ L Sbjct: 127 KAVIDKSWLVEY-KEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLELV 185 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D V+LA LP+VATN +FLS D++AH++ +A+ + K RP Sbjct: 186 RTGRNDEENYIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKRRP 245 Query: 247 -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + + YL++ EM +FSD+PEAL N+VEIA+RC+ + + ++ + Sbjct: 246 KRYSSEQYLRSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGE-----YVLPDFPTEGL 300 Query: 306 EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E + + GLE RL Q A + Y +RL EL V+ M F GYFLIV Sbjct: 301 EINDFFIKVSEKGLEKRLDQLFDRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFLIVM 360 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 361 EFIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 420 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC DRRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 421 FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 480 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + +A ++ + E D V L+++ + LEG R+A HA G+VI ++ Sbjct: 481 TPGMTL-AKAFEEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITD 539 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT+LQ +++ + + Sbjct: 540 FAPLYCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGKEPI 599 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ I +D ++ LL T +FQLESSGM+ ++ ++PDC EDIIALV+L+RPGP+ Sbjct: 600 DITKIDLEDKASFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPGPLQ 659 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + RK+G+E++ H + P+L+ T G+I+YQEQVMQIAQ+L+GYSL Sbjct: 660 SGMVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYSLGG 719 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA G+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 720 ADMLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 779 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT WMKTH+P F+AA M+ +MDN EKI + I ++PP VN F Sbjct: 780 ALVSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLVDECGNMEIDLLPPDVNAGQYKFT 839 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V DN+I Y + A+KGVG I+ A D PF L DFC+R+D KK N+RVLE L+ Sbjct: 840 VNSDNQIVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEKLIK 899 Query: 888 AGALDCFGY------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 +GA+D G +R L ++L K A+ K + ++F + Sbjct: 900 SGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLINDEQT 959 Query: 936 D-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 D + T ++ + E+ LG Y +GHP++ Y ++K T R Sbjct: 960 DSRQTFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQPTGRDRQ 1019 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ + ++G R VT + + + FP Sbjct: 1020 AVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFP 1058 >gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1158 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM +F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + + + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001] Length = 1173 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 513/1050 (48%), Positives = 705/1050 (67%), Gaps = 33/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHSSYSLLEG + + +++ AAD+QPA+A+TDTNNLF ALEFS+KA GIQPI Sbjct: 10 FVHLHVHSSYSLLEGGVKVADLVKAAAADRQPALALTDTNNLFGALEFSEKAAGTGIQPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL + + + P +IVLL GY L+ L SR + + Sbjct: 70 AGLQLTVCFE---APDPMARMPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + +S L E +GLI LTGG +GP+D + + A +RL K FG DRLYV +QRH Sbjct: 127 LAVSAL-EGNVDGLIGLTGGLTGPLDTSLRAGRADQAARRLEVLKDAFGEDRLYVEIQRH 185 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E ++++LA + L +VATN F DY+AHD L+A+A +VS + R R+ Sbjct: 186 GLDDERAVERELLRLADGNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-------SFILQVHAPILPRFIEKECD 301 TP H R+ M+ +F DLP+AL +VEIA RC IL A + + Sbjct: 246 TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCAVRARTRKPILPNFASVAAGEAPPMAE 305 Query: 302 DIQK-----------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + +E EL +A AGLE+RL Q A G+ +DYR RL FEL+VI + Sbjct: 306 ALAEAADAPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFSEEDYRARLKFELDVIVK 365 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP Sbjct: 366 MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L+MPY Sbjct: 426 ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 QVD+L KL+P +PA+PV+ QAI + + ++A +P V RL+EIS+KLEGL+RHASTHA Sbjct: 486 QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L Sbjct: 546 AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDIIALV+L Sbjct: 606 KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665 Query: 650 YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 YRPGP+ NI VY RK G++ HP+++P+LKET G+I+YQEQVM++A++L+GY Sbjct: 666 YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L EAD+LRRAMGKKIK EMD Q++RF+ G ++GI++ A IF+LLAKFADYGFNKSH Sbjct: 726 TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCLESGIAQAKANEIFDLLAKFADYGFNKSH 785 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+++YQTA++K +YPVEFLAA+MTL++DN +K+ +F QDA++ I + PPSVNT Sbjct: 786 AAAYALVTYQTAYLKANYPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 V F V + RI Y+LAAIKGVG + I+ A DKPF L F R++ + +N+R LE+L Sbjct: 846 VVFDVKEGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGALDC R + +++ + K AQ + T+ ++F + + + Sbjct: 906 IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASADVALRIPPHEF 964 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002 + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R + R+AA V+ Sbjct: 965 WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGSASVGRIAASVL 1024 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++T+ G+++G V S+ +EA F Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO 3283-12] Length = 1139 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 488/1037 (47%), Positives = 666/1037 (64%), Gaps = 27/1037 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F+HL+VHS+YSL +GA+ + +I PA+ I D+ NLF ALEFSQ Sbjct: 1 MSYA-DFIHLRVHSAYSLSQGAIRVPDIAGLAKEMYMPAVGIADSGNLFGALEFSQYCTK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GIQPIIG Q+ + + P +VLL G L L S + Sbjct: 60 SGIQPIIGSQI--------GLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSD 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L E EGL++LTGGS GP+ + ++ AEK L + FGDRL V Sbjct: 112 P-ADPFVSLDLLCEK-AEGLLLLTGGSRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIV 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH ++ E V+ LA LPLVATN F + E YEA D L+ +A +++K Sbjct: 170 ELHRHGLAIEKAVEPGVLTLADRFGLPLVATNECFFPTPEMYEAQDALLCIAQGRTMAEK 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K M ++F+DLP+A +NT+EIARRC+ ++ P+LP + Sbjct: 230 DRFRVTPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVR---E 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ LR A GLE R++ G + Y++RL FEL++I++M F GYF+IVADF Sbjct: 287 GATEDETLRAMAWEGLERRMS-GMKLDAETIEKYKERLRFELDIISKMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY V+R+ +LIPN+P Sbjct: 406 QDRRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ +AIA + + +E R D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QL Sbjct: 466 AKPVTLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G VDLS IP Sbjct: 526 VPLYRDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L T G+FQ E +GMR L+ M+P IED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDPKTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+E F GA+K GI + AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK + Sbjct: 705 SEMDHQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837 +PV FLAA M+L + EK+ Q+A + +I ++PP++N DF V + I Y Sbjct: 765 HPVAFLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEEQPDGTYAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAAIK VG ++EA +KPF +L DF R+D K +NR LE+L AGA +C + Sbjct: 825 ALAAIKKVGYGAMESLVEARGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ +S D I + A + + +F + + L + R E Sbjct: 885 RARVFRSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAE 942 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015 +GF+ + HPLD Y +LR++G+ + + G +++A VV K+++ TR G+++ Sbjct: 943 AIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKM 1002 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ + E F Sbjct: 1003 AWVRLSDASGGCEVTVF 1019 >gi|293192339|ref|ZP_06609450.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309] gi|292820254|gb|EFF79248.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309] Length = 1180 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 349/1064 (32%), Positives = 551/1064 (51%), Gaps = 46/1064 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG+ Sbjct: 2 ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61 Query: 68 QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +PIIG + + + + + L+ G L L Sbjct: 62 KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R L + EGLI+ TG SG + A + Sbjct: 122 SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180 Query: 177 LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG + YV + H +R QV+++A PLVATN++ ++ ED + D L+ + Sbjct: 181 IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240 Query: 235 AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ DR + D +Y+++ EM +++S+LP A ++T+EIA RC Sbjct: 241 NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ +++ + + GL R G D R++ +E +VI +M F Sbjct: 301 -YMPDFPVPEGEDKTSWFIKEVERGLRDRFPNG------IPDDVRKQAQYEEDVIIKMGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL VAD+I WAK I VGPGRGSGAGS+ AYAL IT+++PL L+FERFLNP+R+ Sbjct: 354 PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNPERI 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L + + Sbjct: 414 SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473 Query: 474 RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 +L K P +++ I D+ FR+ +P +++ + LEGL R Sbjct: 474 QLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGLTRQ 533 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL+ LT++ Sbjct: 534 WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ +A DL + FDD +TY LL TLG+FQL+ GMR L+ M+PD EDI Sbjct: 594 ALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNFEDI 653 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697 A+ +LYRPGP+ ++ Y RKNG+++I IHP + L++ T G+I+YQEQVMQ Sbjct: 654 SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQVMQ 713 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F G NG S+ +++++ F+ Sbjct: 714 IAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVVPFS 773 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNK+H+AAY ++SY TA++K ++P E++AA +T DN ++ + + R +I ++ Sbjct: 774 AYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN +F I + L AI+ VG I+E A+ F S +DF +V Sbjct: 834 PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVPQVV 893 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 894 CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGEDEDT 953 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---AT 989 I + + + E+ +LG Y S HPL + L + + V Sbjct: 954 GSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSDGA 1013 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++A ++ K T++G+ T + + + FFP Sbjct: 1014 MADRIVKIAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFP 1057 >gi|34558271|ref|NP_908086.1| DNA polymerase III subunit alpha [Wolinella succinogenes DSM 1740] gi|34483990|emb|CAE10986.1| DNA POLYMERASE III ALPHA SUBUNIT [Wolinella succinogenes] Length = 1178 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 379/1058 (35%), Positives = 607/1058 (57%), Gaps = 46/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + HL +H+ YSLL+GA + ++ K+ A+++TD N+F A++F G++PI Sbjct: 5 YTHLHLHTEYSLLDGANKIKSLAKKVKQLGMSAVSMTDHGNMFGAIDFYTAMKKEGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L G + L GYQ L+ L S ++ + R Sbjct: 65 IGIEAYLHNSDEL-----GDKSTKQRFHLCLYAKNEVGYQNLMYLSSMSFI-EGFYYYPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTFKKLFGD 180 I L+E +EGL+ + G + N + A++ L ++++FG+ Sbjct: 119 INKKLLRE-HSEGLVCSSACLQGEVQWHLNTNSERNVKFGAKGYERAKEVALEYREIFGE 177 Query: 181 RLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH D+ + +++L+ + ++ATN++ + +ED EAH+ M +A + Sbjct: 178 DFYLEIMRHGIGDQLFIDEPLLRLSLETGIKIIATNDTHYQLQEDAEAHEAFMCIAMNKN 237 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 + +R R + + YLK+ +M +F+D+PEAL NT EI +C+ L + Sbjct: 238 FNDPNRLRHSVQEFYLKSPEQMEELFADIPEALLNTQEIVEKCNLELHLGNPTPPTFKFT 297 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 K +++ K GL+ RL + ++YR+RL+ E+ +I +MKF Sbjct: 298 EDYAKAEGLDFHTDDDYFAYKCREGLKKRLK---LVPETRHEEYRERLEREIEIINKMKF 354 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GY LIV DF++ AK IPVGPGRGS AGS+ A+ L ITDIDPL+++LLFERFLNP+R+ Sbjct: 355 PGYMLIVWDFVRAAKDRGIPVGPGRGSAAGSLVAFCLEITDIDPLKYALLFERFLNPERV 414 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DFCQ RR E++ YV NKYG VAQ+ITFG+LQAK +RDV R + MPY + D Sbjct: 415 SMPDIDMDFCQSRRGEILDYVVNKYGRYNVAQVITFGTLQAKGVIRDVARVMGMPYGEAD 474 Query: 474 RLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 + KLIP++ + A + + +E ++ ++ E + LEGL Sbjct: 475 AMAKLIPDELGITLNGKGKEGTPDYKAGAFQKEPKIKELIDSNKEARKVWEFALLLEGLK 534 Query: 523 RHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A THAA +VI + L P+Y+ + TQ++MK++E LIKFDFLGLKTLT+ Sbjct: 535 RNAGTHAAAVVIDSQKELWHKAPLYKPSGDETIATQYSMKYLEDVDLIKFDFLGLKTLTV 594 Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++ ++D + R ++D + + +D Y + + T+G+FQ+ES GM+ + ++P Sbjct: 595 IRGAMDMIKVRYSKEIDFNALDVNDPAVYETIQSGNTIGLFQVESKGMQDLNKRLKPTTF 654 Query: 641 EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 EDIIA+++LYRPGP+++ + + +RK+GK I+ P ++P+LK T GVI+YQEQVMQI Sbjct: 655 EDIIAVLALYRPGPMESGMLDDFIDRKHGKAPILYAFPELEPILKPTYGVIVYQEQVMQI 714 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 Q + G+SL AD++RRAMGKKIKEEMD+ K F +GA K G + + +F+L+ KFA Sbjct: 715 VQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFANGAEKRGFDRQKSEELFDLIVKFAG 774 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA++++QT ++KT+YP EF+A+ +T E DN +K+ K+ +A++ I+++P Sbjct: 775 YGFNKSHSAAYAMVTFQTTYLKTYYPHEFMASLLTSEQDNTDKVVKYVDEAKRLGIKVLP 834 Query: 819 PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 P ++ ++F V G+ I + L AIKG G I+E A PF++LEDF R+D+ Sbjct: 835 PDISRSLLEFSVAEIEGEKVILFGLGAIKGAGEIALSKILEERAKAPFENLEDFLGRIDA 894 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 +K+N++ LESL+ +G++ FGYSR LL+ ++ I + ++ E+ + ++F + Sbjct: 895 QKVNKKALESLIKSGSMVGFGYSRRALLEQIEAINEASKESERAKRMAENSLFGDSEEMI 954 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ +E F E E+ LGFY SGHPLD ++P L ++ + G+ Sbjct: 955 VARVEIENFEEYPLKRLLELEKETLGFYVSGHPLDDFRPELAEVNYTLSSQMEQIEDGSA 1014 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V K ++KG+R G + + E F Sbjct: 1015 ALFIGKVEEVTTKFSKKGNRFGILNILDLHGNIEMMVF 1052 >gi|183222285|ref|YP_001840281.1| DNA polymerase III subunit alpha [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912335|ref|YP_001963890.1| DNA-directed DNA polymerase subunit alpha [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777011|gb|ABZ95312.1| DNA-directed DNA polymerase, alpha subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780707|gb|ABZ99005.1| DNA polymerase III alpha subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1173 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 364/1044 (34%), Positives = 571/1044 (54%), Gaps = 31/1044 (2%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 Q +E F HL +H++YS+L+GA+ +++++ ++ ++AITD N++ A+EF ++A Sbjct: 7 QAME---DFAHLHLHTTYSMLDGAIRISDLMKRVKELGMSSVAITDHGNMYGAIEFYKEA 63 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 ++PIIGC+ + T + I+LL GYQ +I+L SR + Sbjct: 64 VKHEVKPIIGCEFYVTP-SRSAETELDEIADGGAYHIILLCKNEVGYQNIIKLASRSFT- 121 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181 + + RI L E +EGL+ LT +G ++R A ++F + Sbjct: 122 EGFYRKPRIDYDLL-ERHSEGLVCLTACLAGEVNRKILEGKEDKAYALAGRLHEIFRKED 180 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ +Q H ++ V+ + +PLV TN+S FL+++D EA D+L+ + + Sbjct: 181 FYLEIQDHGIPEQKTVAEAVIGFSKRTGIPLVLTNDSHFLTKDDREAQDILLRIGMRKNI 240 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R + Y+K+ EM ++F + +A NT+ I +CS Q P+LP F Sbjct: 241 DDEMRFGFNQNFYVKSPEEMKTLFPNHLDAYYNTLAIRDKCSLNFQFGNPLLPPFEVPPG 300 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D ++ L G++ ++R +FE+ I M F+GYFLIV Sbjct: 301 FDT----DSYLEKLVWEGIQE-------KYKEITPIVKERTEFEMQTIRNMHFAGYFLIV 349 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D+I +A++ IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLNPDR MPD D Sbjct: 350 QDYINFARRTGIPVGPGRGSAAGSIIAYALGITNVDPIRYNLLFERFLNPDRKDMPDIDT 409 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC +RR+EVI Y++++YG RV QIITFGSL AKAA++DV R +P+S+V+ + KL P Sbjct: 410 DFCVERREEVINYIKHRYGENRVGQIITFGSLAAKAAIKDVARVFNVPFSEVNEMSKLFP 469 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +A+ R+ ++ I+QKLEG YR HAAG+VI L Sbjct: 470 KKLGITI-QEAVETSKDLRDIAEKSELNKKVFSIAQKLEGNYRQVGRHAAGVVIAPTALE 528 Query: 541 QLVPM----YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 ++VP+ VTQ++ E+ GLIK D LGLK LT + + + +R Sbjct: 529 EIVPLSTVSEPGRDGRSIVTQYDKNMSEQVGLIKMDILGLKNLTTIHHATKLIEKRHGIL 588 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLE-SSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD T+ LL LGIFQL+ SSG+R Q E+I AL++LYRPGP Sbjct: 589 IDLDKIPLDDPATFSLLRKANVLGIFQLDSSSGIRDLFAKAQVQKFEEIAALLALYRPGP 648 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + + Y +RKNGK+K+V H + +L ET GVI+YQEQVM I++++ G+S+ ++DV Sbjct: 649 MGSGMLDDYLDRKNGKKKVVFPHESLAEVLGETYGVIVYQEQVMGISRIMGGFSVGDSDV 708 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AM KK K ++ KE+F+ GA + I++ +A +FE L KF +YGFNKSH+ AYA + Sbjct: 709 LRKAMAKKDKSKLPALKEKFVKGAIEKKINEKLATELFEQLEKFGEYGFNKSHSVAYAFV 768 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +YQTA++K +Y +E+L A ++ + + + K+ +A++ I+I+ P V + F++ D Sbjct: 769 TYQTAFLKANYSIEYLTALLSGDHSKITDVVKYINNAKEMGIRILGPDVKESGISFEITD 828 Query: 833 N-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + + + L++IKGVG A++I+ + + L DF ++D++ N++VLESL GA Sbjct: 829 DTTVRFGLSSIKGVGELAAQNIIHNRNELGGYKQLSDFTKKLDTRLANKKVLESLAQGGA 888 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSS 949 D FGYSR + +S D I YA + ++F G + + L K N Sbjct: 889 FDSFGYSRKTISESTDIILNYANKKQAEEKEGQFSLFGGVNGGSEENLNLPKDGIEWNDD 948 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 E+ G Y SGHPLD + L+ + E + + +A ++ K K T Sbjct: 949 ELLRREKETTGLYLSGHPLDKFTEQLKSLNPTSIENLEEVRPKSKVEIAGVLSKKVVKLT 1008 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 +K + E E FP Sbjct: 1009 KKKEEFVNFMLEDQTGEIECVAFP 1032 >gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae] Length = 1160 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 411/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G +N +++++A PA+AITD NL+ ++F A A Sbjct: 1 MAE-PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG ++ + V + +L +GY L L+S Y Sbjct: 60 EGIKPIIGADFYLE----------SELLGDEVAHLTILARDNKGYHNLTLLISAAYQKGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL EGL++L+GG G + + + Q+ E+ L ++ F + Y+ Sbjct: 110 GAIGPTIKREWLV-THKEGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D VQLA +P+VATNN F++ +D+ AH++ +A+ ++ + Sbjct: 169 ELVRTGRPDEESYLHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQ 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P YL++ EMV +F+D+PEALEN+VEIA+RC+ ++++ + + Sbjct: 229 KRPKNYSPQQYLRSEQEMVELFADIPEALENSVEIAKRCNVMMRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L A AGLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMATEDFLIKCAKAGLEERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDQVIEHVAQMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+DP + + + + +E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PSDPGMTLEKAFVV-EPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D P+TQF+ +E AGL+KFDFLGL+TLT++ +LD + QR K +L+ Sbjct: 523 TDFAPLYCDPEGQNPLTQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLA 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP D + + LL T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIATIPLTDQKCFDLLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + +L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM +Q+ F +GA KNGI + + IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKKPEEMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + + ++++PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKVLPPDINSGLYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+E+ F + D C+RVD+KKLNRRV+E L Sbjct: 823 FHVNDRGEIVYGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944 + +GA D G R L+ SL++ K A K ++F + + + + Sbjct: 883 IMSGAFDHLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVEQSYASVA 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003 + E E+ LG Y +GHP+ Y + + ++ T RG + + ++ Sbjct: 943 KWPEHLILEGERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLALT 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G+RIG T + + + F Sbjct: 1003 AKVVTTKRGNRIGICTLDDRSGRLDIMLF 1031 >gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13] gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13] Length = 1153 Score = 748 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 403/1053 (38%), Positives = 604/1053 (57%), Gaps = 48/1053 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL++HS YS+++G + + +++ A D QPA+A+TD NLF ++F + A Sbjct: 1 MNNT-RFVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I + + ++LLV GY L EL+SR +L +Q Sbjct: 60 KGVKPIGGCDVWITNDADREKP----------SRLLLLVKDRTGYLNLCELLSRSWLENQ 109 Query: 125 GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + I + WL+E+ + GLI L+G G I AF + AEK + +F D Sbjct: 110 WRGRAEIRIEWLEELSKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPD 169 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ +QR H G ++Y V+LA +LP+VAT+ FLS+E++ AH+ ++ Sbjct: 170 NFYIEIQRTGHSGMEQYLRHA-VELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGE 228 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++S K R Y + EM +F+DLP A++N+VEIARRC+ +L++ LP F Sbjct: 229 ILSNKRRAHNFNERQYFYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEFPT 288 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354 + + L ++A GLE RL + + Y +RLD+E+ I M FS Sbjct: 289 PDGM----TLDEFLTSEAKHGLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFS 344 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DPL ++L+FERFLNP+R+S Sbjct: 345 GYFLIVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVS 404 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFD+DFCQ RD+VI+YV+++YG + V+QI TFG++ AKAA+RDVGR L + Y+ D Sbjct: 405 MPDFDVDFCQHGRDKVIQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDG 464 Query: 475 LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V++ ++ E ++ V +LL +++++EG+ R+ HA G++ Sbjct: 465 ISKLIPFKPGKQVTIAEAKKEEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVL 524 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 I L+ P+Y V+ F+ +E GL+KFDFLGL TLT+L ++ ++ Q Sbjct: 525 IAPGKLTDFCPLYTQGGEAGVVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLD 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +L IP DD TY LL T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 585 PEMANFNLDTIPLDDKATYDLLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G EK +L ET G+++YQEQVMQ+AQ++ GY+L A Sbjct: 645 RPGPMDLIPDFCRRKHG-EKFEYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGA 703 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EM + ++ F GA+KN +++ A IF+L+ KFA YGFNKSHAAAYA Sbjct: 704 DLLRRAMGKKDANEMARHRQIFRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYA 763 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFK 829 ++SYQTA++K H+ F+AA+M+L MD+ +K+K +DA + + I+PP +N F Sbjct: 764 LLSYQTAFLKQHHAAAFMAANMSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFT 823 Query: 830 VGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 I Y L A+KG G + I++A ++PF L DFC RVD ++NR Sbjct: 824 PVGEAPSVSKKPVSAIRYGLGAVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINR 883 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 R +ESL+ AGA DCF R LL S+D + + ++F E+ + + Sbjct: 884 RTIESLIRAGAFDCFNVDRAVLLASVD--LAIEAAEQAEASANQVSLFGEEEAVIN-TVE 940 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 + + E+ VLGF SGH + Y R+ E + + A Sbjct: 941 YVQVPHWTEKHKLTEEKGVLGFCLSGHLFNAYAAEARQFAKTRIIELEPSRDPKWV--AG 998 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + + T++G + VT + + E F Sbjct: 999 VISGNRTQMTQRGKMM-IVTLDDGSGTIEVTIF 1030 >gi|227545586|ref|ZP_03975635.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213989|gb|EEI81826.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516113|emb|CBK69729.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. longum F8] Length = 1189 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 344/1075 (32%), Positives = 548/1075 (50%), Gaps = 53/1075 (4%) Query: 1 LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E Sbjct: 1 MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + + + EG Sbjct: 61 TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 LI+ S L + + R+ L ++G+I +G SG I + A Sbjct: 121 LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEAL 179 Query: 169 KRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + F+ +FG D ++ L H + + ++ +A + PL+ATN+S ++ ED + Sbjct: 180 RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A D ++ + + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + Sbjct: 240 AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + +E + K GLE R G D ++ D+E Sbjct: 300 DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FE Sbjct: 352 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + Sbjct: 412 RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471 Query: 466 QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 +S +++ K +P +SL I D + FRE +DP R+ E + Sbjct: 472 GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HA ++G P++ P+ + T F E GL+K DFLG Sbjct: 532 KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT++ +L + +D + IP DD ETY L++ TLG+FQL+S GMR L+ Sbjct: 591 LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++PD DI AL++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+ Sbjct: 651 LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + Sbjct: 711 IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + + Sbjct: 771 VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866 AR+ IQ++ P VN ++ + + + L AI+ VG I+ F + Sbjct: 831 ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R LL + +++ + ++ Sbjct: 891 DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950 Query: 927 FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F+ + ++ +T+ + + E+ +LG Y S HPL + IL + Sbjct: 951 FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010 Query: 982 GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|239620845|ref|ZP_04663876.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516421|gb|EEQ56288.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1189 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 344/1075 (32%), Positives = 545/1075 (50%), Gaps = 53/1075 (4%) Query: 1 LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E Sbjct: 1 MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + + + EG Sbjct: 61 TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 LI+ S L + + R+ L ++G+I +G SG I A Sbjct: 121 LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + F+ +FG D ++ L H + ++ +A PL+ATN+S ++ ED + Sbjct: 180 RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A D ++ + + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + Sbjct: 240 AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + +E + K GLE R G D ++ D+E Sbjct: 300 DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FE Sbjct: 352 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + Sbjct: 412 RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471 Query: 466 QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 +S +++ K +P +SL I D + FRE +DP R+ E + Sbjct: 472 GYEFSVGEKITKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDTKRITEEA 531 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HA ++G P++ P+ + T F E GL+K DFLG Sbjct: 532 KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT++ +L + +D + IP DD ETY L++ TLG+FQL+S GMR L+ Sbjct: 591 LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++PD DI AL++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+ Sbjct: 651 LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + Sbjct: 711 IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + + Sbjct: 771 VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866 AR+ IQ++ P VN ++ + + + L AI+ VG I+ F + Sbjct: 831 ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R LL + +++ + ++ Sbjct: 891 DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950 Query: 927 FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F+ + ++ +T+ + + E+ +LG Y S HPL + IL + Sbjct: 951 FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010 Query: 982 GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|312883823|ref|ZP_07743542.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309368572|gb|EFP96105.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 1143 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 408/1031 (39%), Positives = 602/1031 (58%), Gaps = 37/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + ++ K+A PA+A+TD NL ++F A ++G++PIIG Sbjct: 1 MVDGLSKVPALVKKVAEMGMPAVALTDFTNLCGLVKFYGSAHSSGVKPIIGADF------ 54 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + I +L + GY+ L L+S+ YL + I WL E+ + Sbjct: 55 ----LMQSEEFGEELTRITVLAADNLGYKNLTLLISKAYLRGHIQHHPVIDKKWLAEL-S 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200 +GLI+L+GG SG I +A + VA + + +K+ F DR Y+ L R + Sbjct: 110 QGLIVLSGGRSGEIGKALLKGNQHVASQCVDFYKEYFPDRFYLELTRTGRADEEAYLHFA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA +LP+VATN + L + +EAH++ +A+ + RP+ + YL++ E Sbjct: 170 LELAEITQLPVVATNEVVILDDSFFEAHEIRVAIHDGYTLEDPRRPKNYSSQQYLRSEQE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ EE L K+ GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTDGMEETEFLIKKSQQGL 284 Query: 320 EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL AQ +Y +RL EL VI M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDPNTRAQRRPEYDERLQVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L + VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLE-KAFQAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 E D + L+++ + LEG R+A HA G+VI ++ P+Y D PVT Sbjct: 464 ALPELYNNDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L + R + V + IP D +++L Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKLPVVIESIPLQDQASFNL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQNAETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 I H + L T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 AISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNG++ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 704 MAKQRGTFKEGAEKNGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V + I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECIRMKLKVLPPDINSGVYRFNVDETGAIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+ A F L DFC+R+D KK+N+RV+E L++AGALD G R ++ Sbjct: 824 GVGEGPIEAILTAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A + + ++F + + + + V E E+ LG Sbjct: 884 ASLNDAVKAASQHHQAESFGQTDLFGVLTQAPDEIEKKYTQVAPWPEKVWLEGERDTLGL 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHP++ Y L K +++ T R ++ ++ +V++ + T++GSRIG +T Sbjct: 944 YLTGHPINAYLRELTKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTKRGSRIGIMTLD 1003 Query: 1022 EPAKEYEANFF 1032 + + E F Sbjct: 1004 DRSGRMEVMLF 1014 >gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150] Length = 1170 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 495/1062 (46%), Positives = 676/1062 (63%), Gaps = 53/1062 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+VHS YSLLEGA+ + + + PA+A+TDTNNLF+ALE S+ Sbjct: 1 MTNDPRFIHLRVHSEYSLLEGAMRVKKLAGLVKKSNMPAVALTDTNNLFAALEVSETLAK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQ+DI + T P +V L GY+ L++L S +YL D+ Sbjct: 61 EGLQPIIGCQVDIAAEVARGETPPAPAP------LVFLAQNEVGYENLMKLNSCLYL-DK 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ + + +GLI LTGG+ GPI + S A+ + ++FGDRLYV Sbjct: 114 AGALPSATMAEVAQY-NDGLICLTGGADGPIGQLLQSGSLPAAKAMMSELAQVFGDRLYV 172 Query: 185 NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G + E V++AY LPLVATN+ F + E +EAHD LM ++ Sbjct: 173 ELQRHPGAEGPQQAEAKTERGFVEMAYEMNLPLVATNDVYFPNTEMFEAHDALMCISQGA 232 Query: 239 VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V Q D R ++T HY K++ EM+++F+DLPEA+ENTVEIA+RC+F + Sbjct: 233 YVDQLDSRRQLTDQHYFKSQQEMITLFADLPEAIENTVEIAKRCAFK--------TYKRD 284 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E +ELR +A AGL+ RL I ++Y +RLDFEL +I M F GYF Sbjct: 285 PILPKFADDEVDELRLQAHAGLKARLE--VIPHATSVEEYEKRLDFELGIIEGMGFPGYF 342 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD Sbjct: 343 LIVADFIKWAKDHEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K Sbjct: 403 FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 462 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE A+ V+RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 463 MIPVEGVKPVSIEKALADEPRLREEAKAEEVVERLLRYGQQVEGLLRNASTHAAGVVIGD 522 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G + Sbjct: 523 RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTIVQNAVDLIKASGRSL 582 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L T+ +FQ+ESSGM AL M+PD Sbjct: 583 HVGADGRQLYEPLAGTENDINAIPLDDEASYELYAAAKTIAVFQVESSGMMDALRRMKPD 642 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDIIALV+LYRPGP++NI + KNG + +HP ID +L ETQG+I+YQEQVMQI Sbjct: 643 CIEDIIALVALYRPGPMENIPKFCEVKNGLSERDKLHPTIDHILDETQGIIVYQEQVMQI 702 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ ++GYSL AD+LRRAMGKK++E MD +K +FI G+S+NG+ + A +++LL KFA+ Sbjct: 703 AQEMAGYSLGGADLLRRAMGKKLQEAMDAEKPKFIKGSSENGVDEKKAREVWDLLDKFAN 762 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ------F 812 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + + R+ Sbjct: 763 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYADEVRKPTDRGGM 822 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 I+I+PP VN F V + R+ Y+L A+K VG R I A DKPF +L D R Sbjct: 823 GIEIIPPCVNRSDAVFSVSEGRVVYALGALKNVGVEAMRLITGARGDKPFVTLFDLARRA 882 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K++ +R +E L AGA D +R ++ +SLD + Y+ + + R + ++F E G Sbjct: 883 DLKRVGKRPMEMLARAGAFDELDRNRARVSRSLDALVSYSAAIHEQRASNQVSLFG-EAG 941 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + L + R E +GFY SGHPLD Y L++ G+ E+ + G Sbjct: 942 DDLPEPRLTPCDDWLPAERLSEEFTSIGFYLSGHPLDDYMVALKRSGVMTLHEATQKVAG 1001 Query: 993 --NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++LA + +Q++K+ +G+R +V S+ +YE F Sbjct: 1002 GAAVVKLAGTISGRQERKSARGNRFAFVQLSDTTGQYEVTMF 1043 >gi|23336668|ref|ZP_00121872.1| COG0587: DNA polymerase III, alpha subunit [Bifidobacterium longum DJO10A] Length = 1189 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 344/1075 (32%), Positives = 547/1075 (50%), Gaps = 53/1075 (4%) Query: 1 LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E Sbjct: 1 MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + + + EG Sbjct: 61 TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 LI+ S L + + R+ L ++G+I +G SG I A Sbjct: 121 LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179 Query: 169 KRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + F+ +FG D ++ L H + + ++ +A + PL+ATN+S ++ ED + Sbjct: 180 RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A D ++ + + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + Sbjct: 240 AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + +E + K GLE R G D ++ D+E Sbjct: 300 DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FE Sbjct: 352 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + Sbjct: 412 RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471 Query: 466 QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 +S +++ K +P +SL I D + FRE +DP R+ E + Sbjct: 472 GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HA ++G P++ P+ + T F E GL+K DFLG Sbjct: 532 KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT++ +L + +D + IP DD ETY L++ TLG+FQL+S GMR L+ Sbjct: 591 LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++PD DI AL++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+ Sbjct: 651 LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + Sbjct: 711 IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + + Sbjct: 771 VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866 AR+ IQ++ P VN ++ + + + L AI+ VG I+ F + Sbjct: 831 ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R LL + +++ + ++ Sbjct: 891 DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950 Query: 927 FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F+ + ++ +T+ + + E+ +LG Y S HPL + IL + Sbjct: 951 FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010 Query: 982 GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4] gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4] Length = 1173 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 513/1050 (48%), Positives = 703/1050 (66%), Gaps = 33/1050 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHSSYSLLEG + +++ AAD+QPA+A+TDTNNLF ALEFS+ A AGIQPI Sbjct: 10 FIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G QL I + + P +IVLL GY L+ L SR + + Sbjct: 70 AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 + +S L E EGLI LTGG SGP+D + A +RL K FG+ LYV +QRH Sbjct: 127 LAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D E ++++LA T+ L +VATN F DY+AHD L+A+A +VS + R R+ Sbjct: 186 GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-------LQVHAPILPRFIEKECD 301 TP H R+ M+ +F DLP+AL +VEIA RCS+ L A + D Sbjct: 246 TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305 Query: 302 DIQK-----------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + +E EL +A AGL++RL Q A G+ +DYR RL FEL+VI + Sbjct: 306 ALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRARLKFELDVIVK 365 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP Sbjct: 366 MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFC + R+ VIRYVQ +YG +V QIITFG+L A+ LRDVGR L+MPY Sbjct: 426 ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 QVD+L KL+P +PA+PV+ QAI + + ++A +P V RL+EIS+KLEGL+RHASTHA Sbjct: 486 QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ D L Sbjct: 546 AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 QRG++VDL+ IP DD +TY + T+ +FQ+ES+GMR+AL MQ D +EDIIALV+L Sbjct: 606 KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665 Query: 650 YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 YRPGP+ NI VY RK G++ HP+++P+LKET G+I+YQEQVM++A++L+GY Sbjct: 666 YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K A IF+LLAKFADYGFNKSH Sbjct: 726 TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++ I + PPSVNT Sbjct: 786 AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 V F V + RI Y+LAAIKGVG + I+ A D PF L F R++ + +N+R LE+L Sbjct: 846 VVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPRHVNKRTLENL 905 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGALDC R + +++ + K AQ + T+ ++F + + + Sbjct: 906 IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002 + + + E +GF+ SGHPLD Y PIL K+ ++ + + +R R+AA V+ Sbjct: 965 WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +++T+ G+++G V S+ +EA F Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054 >gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As] Length = 1146 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 414/1036 (39%), Positives = 593/1036 (57%), Gaps = 32/1036 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+ H+ YS+++GAL +++++ A D Q A+AITD NNLF+ + F + A AG++PI Sbjct: 3 YVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + ++LLV GY L +L+SR +L +Q + Sbjct: 63 IGCDVLL----------GSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL+ EGLI L+G G I +A + A +F R Y+ LQR Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRGG 172 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 V LA LP+VAT+ FL +D++AH+ + +A + R R Sbjct: 173 HAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKF 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T Y K+++EM ++F+D+P AL NTV IA+RC+ +L + P LP F + Sbjct: 233 TAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQG----LTPA 288 Query: 309 NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R +A GLE RL A Y+QRL++EL +IA+M F GYFLIVADFI Sbjct: 289 EFFRQQAQDGLEQRLAVLYPQADQCEAARPRYQQRLEYELGIIAKMGFEGYFLIVADFIN 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ+ Sbjct: 349 WAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ KYG + V+QI TFG++ A+AA+RDVGR L + Y+ D + KLIP P Sbjct: 409 NRDRVIDYVKEKYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQ 468 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +S A+ + + + V +LL+++Q+LEGL R+ HA G++I L+ P Sbjct: 469 HISLADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCP 528 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601 +Y S V+QF+ +E AGL+KFDFLGL TLT+L+ + + L I Sbjct: 529 LYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDI 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD ++Y L+ T+ +FQLES GM+ L +PD EDIIALV+LYRPGP+D I Y Sbjct: 589 PLDDAKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTY 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK GKE +V P + +L+ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK Sbjct: 649 CARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKK 708 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM + + F GA+KNGI A IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK Sbjct: 709 PEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKA 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLA 840 HYP EFLAA+M++ +D+ +K+K +DA+ I ++PP VN F D I Y+L Sbjct: 769 HYPAEFLAANMSIALDDTDKLKILVEDAQACGINVLPPDVNASQWRFDPVDSKTIRYALG 828 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKG G ++ A ++PF SL DF RVD +LN+RVLE+L AGA D R Sbjct: 829 AIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAA 888 Query: 901 LLQSLDNIQKYAQWVEKNR-TNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFENE 955 ++ +++ YA E R ++FA + + + L + + + E Sbjct: 889 VMAAVETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFE 948 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + +G+Y SGH D +R+ + V + + +A + + ++++G RI Sbjct: 949 KTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-RI 1005 Query: 1016 GWVTFSEPAKEYEANF 1031 + + + E Sbjct: 1006 AILALEDRSGAMEIVI 1021 >gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I] gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I] Length = 1163 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 396/1055 (37%), Positives = 603/1055 (57%), Gaps = 45/1055 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +++ + P FVHL+VHS +S+ +G + +++++ ++A QPA+A+TD +N+F ++F + Sbjct: 1 MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A AG++P+ G + + D+ + ++LLV +GY L EL++R + Sbjct: 61 GARGAGVKPVAGSDVWLTNDDDREKP----------FRLLLLVRNHQGYLNLCELLTRSF 110 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L +Q K + WLQ G EGLI+L+G G + +A ++ A + +LF Sbjct: 111 LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR D ++LA LP+VAT+ FL ++++AH+ + +A + Sbjct: 169 SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D YL + EM F+D+P AL NTVEIARRC+ L + P LP F Sbjct: 229 LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288 Query: 299 ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + ++ L + GLE L + Y +RL +E I +M F G Sbjct: 289 DGV----TLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM Sbjct: 345 YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY D L Sbjct: 405 PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP +PA P + + + D+ F++ + V L+++++ LEGL R HA G++I Sbjct: 465 SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524 Query: 535 GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591 L+ P+Y + + V+QF+ +E AGL+KFDFLGL+ LT+L ++ F+ Q Sbjct: 525 APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ + DD Y +L T +FQLES GM++ L+ ++P EDIIA+++LY Sbjct: 585 ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ + + NRK+G+ + HP ++ L+ T GVI+YQEQVM I+Q++ GYSL Sbjct: 645 RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K +E F GA + G +AV +F+L+ KFA YGFNKSH+AA Sbjct: 705 GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+ ++++PP VN F Sbjct: 765 YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824 Query: 829 KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 + ++ + Y L A+KG G I+ A PF +L DFC RV + Sbjct: 825 EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R +L S+ + A+ + R+ ++F + G Sbjct: 885 NRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAE--QAARSANQSSLFGDDSGDVVAG 942 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L K + N E+ LG+YFSGH D ++ +R++ + Sbjct: 943 -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQ--WM 999 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + TR+G + + + + E + F Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033 >gi|332178643|gb|AEE14332.1| DNA polymerase III, alpha subunit [Thermodesulfobium narugense DSM 14796] Length = 1138 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 407/1030 (39%), Positives = 612/1030 (59%), Gaps = 23/1030 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL+GA L++I+ K D A+A+TD N++ AL+F A I+P Sbjct: 2 SFVHLHVHSEYSLLDGASRLDDIILKAKNDNMQALALTDHGNMYGALKFYSLAKEHEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IGC++ I D K T + ++L+ EGY+ L+ LVS +L Sbjct: 62 LIGCEMYITD-DMTKQTRANGDLDTYLSHLILIAKDFEGYKNLVRLVSFGFLKG-FYYKP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L L E +GLI+ + G I + N A + TFK+ FGD Y+ +Q H Sbjct: 120 RIDLKTLFEY-KKGLIVSSACMYGRIPQLILSNKKDQAVELAKTFKEQFGDDFYLEIQDH 178 Query: 190 RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + ++ ++ +PL+ATN+S + ++ED E HDVL+ + V ++R + Sbjct: 179 GLPEEKKLIPVIINMSQDLNIPLIATNDSHYTNKEDAEFHDVLLCIQTKKTVQDENRMKF 238 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D Y K EM +FS +A+ENT+ +A +CS L + +P+F E K E Sbjct: 239 NTDSLYFKTSEEMKELFSYCKDAVENTLIVADKCSLELPIGKVTVPKFPCPEG----KSE 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L GL R G ++ +RL +EL++I + + GYFLIV+D+I +A Sbjct: 295 REYLNLLIEKGLNRRYK------GNITKEIEERLKYELDIIQKTGYEGYFLIVSDYINYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGS AGS+ AY L ITDIDPL+++LLFERFLNP+R++ PD D+DFC ++R Sbjct: 349 KENGIQVGPGRGSAAGSLVAYVLGITDIDPLKYNLLFERFLNPERVNPPDIDVDFCIEKR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y+ +YG E VAQI TFG++ A+A +RDVGR L P S VD+L KLIPN P Sbjct: 409 AQVLNYLVKRYGQENVAQIGTFGTMNARAVVRDVGRTLGKPLSIVDKLAKLIPNKPGSQA 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +L+ + ++ ++PS+ L E S KLEGL RH+S HAAG+VI P+ L+P+ R Sbjct: 469 TLKEAEELQEVKQFLNSNPSLKELWEKSIKLEGLTRHSSVHAAGVVISPFPIYDLIPLQR 528 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+PVTQ+ M+ +EK+G +K D LGL+ LT++ K+L+ + + RG+KVD+ IP DD Sbjct: 529 PSEGDVPVTQWPMEDVEKSGFLKMDLLGLRNLTVIGKTLELIEKTRGIKVDIEDIPLDDP 588 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 + Y LL TLG+FQLESSGM+Q L+ ++PD ED+IA+++LYRPGP+++ +V R Sbjct: 589 KVYELLERGETLGVFQLESSGMQQLLKEVKPDKFEDLIAILALYRPGPMNSGMVEQFIRR 648 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K+ KE +V IH ++P+L ET GV+IYQEQ+MQ+A +L+G+SL EAD+LRRAMGKK E Sbjct: 649 KHKKEPVVFIHKDVEPILSETYGVMIYQEQIMQLASILAGFSLGEADLLRRAMGKKKAEV 708 Query: 725 MDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M QK +F+ GA G IS+ A IF+ +AKFA+YGFNKSH+A+YA+I+Y+TAW+K +Y Sbjct: 709 MAAQKPKFVEGAINKGLISREQAEKIFDDMAKFAEYGFNKSHSASYALITYRTAWLKVYY 768 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 E++AA ++ + +K+ ++ ++A++F ++++ P VN +F V N+I + L+AIK Sbjct: 769 TPEYMAALLSSVSSDTDKVAEYIKEAKKFGVEVLSPDVNESGENFTVIGNKIRFGLSAIK 828 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+ +D F +L DF R SK +N+++ E+L+ AGALD R+ LL Sbjct: 829 GVGKAAIDTILANRLSDGNFKNLRDFIYRTSSKSVNKKIYENLIKAGALDNLYKDRLNLL 888 Query: 903 QSLDNIQKYAQWVEK--NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LD + + K N + F E+ + I + + S++ E+ VLG Sbjct: 889 DQLDEVLALVKKSTKTDNEHSLFNEAFDEEELYIDNDIEIIPKKDFDPSLKLAFEKEVLG 948 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y SGHPL YK ++ + +++ +V +K+Q + GS + Sbjct: 949 LYVSGHPLKPYKFLINSISNFNISSLNEL-DTEKVKICGIVFNKKQVFKKDGSFFFVLNI 1007 Query: 1021 SEPAKEYEAN 1030 + E Sbjct: 1008 EDLTGSVECI 1017 >gi|322691499|ref|YP_004221069.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456355|dbj|BAJ66977.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 1185 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 344/1064 (32%), Positives = 542/1064 (50%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I + A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R LL + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V + Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|82703844|ref|YP_413410.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC 25196] gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC 25196] Length = 1174 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 420/1045 (40%), Positives = 619/1045 (59%), Gaps = 40/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +F+HL++HS YS+++G + ++ + K A+ PA+A+TD +NLF ++F Q+A Sbjct: 1 MSAPTTFIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARN 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI+GC + I + + I+LL + GY L L+SR Y +Q Sbjct: 61 KGLKPIVGCDVWISNDIDRDKS----------FRILLLCQSYPGYLALCRLLSRAYRENQ 110 Query: 125 GKQSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + I SWL ++GTEGLI L+G + G I A N A + +LF R Sbjct: 111 YRGRAEIRKSWLSASDLGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRF 170 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR + + + LA LP+VAT+ +L+ EDY AH+ + ++ V+ Sbjct: 171 YIEVQRAGHANAEALVQRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYVLG 230 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + RPR T + Y K ++EM ++F+D+P AL NT+EIARRC+ L++ LP+F Sbjct: 231 DRRRPRHCTEEQYFKTQAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTPN- 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + LRN+A GLE R+ + YR RLDFE + I +M F+GYF Sbjct: 290 ---NESLDLYLRNQASTGLEKRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK+N++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKQNDVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQD R+ VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY+ VD+L K Sbjct: 407 FDIDFCQDGREHVIEYVKQKYGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 466 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P + + ++ + + A+ V LLE++++LEGL R+ HA G++I Sbjct: 467 LVPFELGMTLKKAR-EEEPQLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIAAG 525 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593 ++ P+Y + V+Q + +EK GL+KFDFLGL+TLT+L S+ ++ QR Sbjct: 526 KITDFCPVYCADGGESVVSQLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSGNT 585 Query: 594 ------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 L +P DD +TY L+ +GIFQ ES GM+ L+ +PD ED+IALV Sbjct: 586 GNDSETRSFSLENLPLDDPDTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIALV 645 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+ I + RK+GK + + P + P+L+ T G+++YQEQVMQIAQ++ GYSL Sbjct: 646 ALYRPGPMSLIPEFIERKHGKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGYSL 705 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q++ F+SGA KNG+++ A +F+L+ KFA YGFNKSHAA Sbjct: 706 GSADLLRRAMGKKKPEEMALQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSHAA 765 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA+I++QTA++K HYP EF++A+++ +MD+ +K+ F +D+ + ++PP +N Sbjct: 766 AYALIAFQTAYLKAHYPSEFMSATLSADMDDTDKVHIFFEDSIANGLAVLPPDINLSGYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKG G + I++A F L DFC RVD + +NRRV+ESL Sbjct: 826 FVPVDEKTIRYGLGAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVESL 885 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 + AGA D R LL S+ + A+ + R+ ++F E G + L K V Sbjct: 886 IRAGAFDAIDTHRAALLASVGIALESAE--QAERSVNQVSLFGEEMGVIE-RPALVKVPV 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 +NE+ LG Y SGHP + Y+ L V LA +V + + Sbjct: 943 WPEKETLKNEKLALGLYLSGHPFNAYREELNHFVRTRLNRLVPQREPQ--LLAGIVYAIR 1000 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEAN 1030 + TR+G R+G + + + + E Sbjct: 1001 TQVTRRG-RMGVIVLDDGSNQVELV 1024 >gi|23464753|ref|NP_695356.1| DNA polymerase III subunit alpha [Bifidobacterium longum NCC2705] gi|23325323|gb|AAN23992.1| DNA polymerase III alpha subunit [Bifidobacterium longum NCC2705] Length = 1189 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 344/1075 (32%), Positives = 544/1075 (50%), Gaps = 53/1075 (4%) Query: 1 LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + + + +FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E Sbjct: 1 MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + + + EG Sbjct: 61 TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 LI+ S L + + R+ L ++G+I +G SG I A Sbjct: 121 LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + F+ +FG D ++ L H + ++ +A PL+ATN+S ++ ED Sbjct: 180 RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAG 239 Query: 227 AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A D ++ + + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + Sbjct: 240 AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 H + +E + K GLE R G D ++ D+E Sbjct: 300 DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FE Sbjct: 352 GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S+PD D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + Sbjct: 412 RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471 Query: 466 QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 +S +++ K +P +SL I D + FRE +DP R+ E + Sbjct: 472 GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HA ++G P++ P+ + T F E GL+K DFLG Sbjct: 532 KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L LT++ +L + +D + IP DD ETY L++ TLG+FQL+S GMR L+ Sbjct: 591 LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688 ++PD DI AL++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+ Sbjct: 651 LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + Sbjct: 711 IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + + Sbjct: 771 VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866 AR+ IQ++ P VN ++ + + + L AI+ VG I+ F + Sbjct: 831 ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF RV LNRR++ESL+ AGA D +R LL + +++ + ++ Sbjct: 891 DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950 Query: 927 FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F+ + ++ +T+ + + E+ +LG Y S HPL + IL + Sbjct: 951 FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010 Query: 982 GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|312129891|ref|YP_003997231.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM 17132] gi|311906437|gb|ADQ16878.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM 17132] Length = 1198 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 354/1078 (32%), Positives = 565/1078 (52%), Gaps = 66/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ YSLL+GA S+ + K D+ PA+AITD N+F +F A G++PI Sbjct: 3 FSHLHNHTQYSLLDGASSIKKLFAKAQQDEMPAVAITDHGNMFGVFDFVATAGKYGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ + K + + +LL AEGY+ L +L S Y+ + R Sbjct: 63 VGCEFYVVDDHTRKSFTKDQK--DVRYHQLLLAKNAEGYKNLTKLCSLGYMEGLYSKYPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + +++ +GLI T + + + AE+ + FG+ YV +QRH Sbjct: 121 ITKALIEKY-KDGLIATTCCIGALVPKTILKKGEEEAEQEFRWWLDRFGEDYYVEIQRHD 179 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246 ++ R +++ A + + ++A+N+S ++ + D+ AHD+L+ + +S Sbjct: 180 MAEQIRVNEVLLKFAKKYNVKVIASNDSHYVDQSDWVAHDILLCINTGEKLSTPSNKEFS 239 Query: 247 -------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 Y K +EM +FSD+PEA++NT EI + + +LP Sbjct: 240 DDAEGSTKGTRFAFYNDQFYFKTTAEMTQLFSDIPEAIDNTNEIVGKVDHLNLKKDILLP 299 Query: 294 RFIEKECD----DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 F + D + LR+ G G + + +RL+FEL+ I Sbjct: 300 NFPIPQEFKVHADDTLNQWEYLRHLTFEGARK-------RYGTVSPEAEERLNFELHTIK 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F+GYFLIV DFI+ ++ + +GPGRGS AGS AY + IT+IDP++++LLFERFLN Sbjct: 353 TMGFAGYFLIVMDFIKAGRELGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR SMPD D DF + R VI YV +KYG +VAQIIT+G++ K++++DV R + +P Sbjct: 413 PDRKSMPDIDTDFDDEGRQRVIDYVVDKYGKNQVAQIITYGTMATKSSVKDVARVMDLPL 472 Query: 470 SQVDRLCKLIPNDPA---------------------HPVSLQAIADDSRFREARLADPSV 508 ++ + + KLIP+ P ++ I + + R+ Sbjct: 473 AEANHIAKLIPDKPGYGMNFQKLIHAPISGPKSLTEIGLNPDEIENVKQIRDMYEGKDLT 532 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 ++L+ ++KLEG R+ HAAGI+I LS++VP+ SDL +TQF K IE AG+ Sbjct: 533 AKVLKQAEKLEGTVRNTGIHAAGIIIAPYDLSEIVPVSVAKDSDLLITQFEGKVIEDAGV 592 Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 IK DFLGL+ LT+++++L + + V++D+ IP DD ETY L T IFQ ES G Sbjct: 593 IKMDFLGLRNLTIIKEALRMIKENYGVEIDIDNIPLDDEETYRLFQRGETNAIFQFESDG 652 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M++ ++ +QPD +D+IA+ +LYRPGPI I Y NRK+G+E I P ++ L ET G Sbjct: 653 MKKYMKELQPDRFDDLIAMNALYRPGPIGYIPNYINRKHGREPITYDLPEMEEHLAETYG 712 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 + +YQEQVM ++Q L+ ++ +AD LR+AMGKK KE +DK K +F+ G +KNG + + Sbjct: 713 ITVYQEQVMLLSQKLANFTKGDADTLRKAMGKKQKEVLDKMKAKFMEGGAKNGHPEKVLD 772 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ FA Y FNKSH+ YA ++YQTA++KTHY E++A +T ++ N+EKI F + Sbjct: 773 KVWTDWEAFAQYAFNKSHSTCYAFVAYQTAYLKTHYTAEYMAGVLTSQLGNIEKITFFME 832 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 + + +Q++ P +N F V I + L IKG G I+E + F + Sbjct: 833 ECKALGLQVLGPDINESQKRFSVNKKHEIRFGLGGIKGTGDAAVDAIIEEREKNGQFKDI 892 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEK 917 DF +RV+ + +N++ LESL +AGA DCF R ++ + +YA V++ Sbjct: 893 FDFITRVNLRTVNKKTLESLAYAGAFDCFEEIHRAIYFHVSEEGGTFIERLIRYANKVQE 952 Query: 918 NRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++ + +F G + K +EK + + E+ V+GFY SGHPLD + Sbjct: 953 DKMSTQNTLFGTLGGDTAFNIQKPKIEKVEEWGNIEKLRYEKEVVGFYISGHPLDQFAME 1012 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + +V S ++++ G++ G + E F Sbjct: 1013 MSLCRPLDNTLLEKENKDKEFTIGGVVTSANIRQSKNGNQFGIYRIEDYTGSLEIALF 1070 >gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1158 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114] gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114] Length = 1183 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 493/1074 (45%), Positives = 671/1074 (62%), Gaps = 64/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL+ HS YSLLEGAL L + PA+A+TD NN+F+ALEFS Sbjct: 1 MSTHPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+GCQ+D+ +T Q +VLL + GY+ L+ L S +Y+ D+ Sbjct: 61 AGVQPILGCQVDVAY-----VTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYI-DK 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G ++ LS L E G+I LTGG GP+ + A+ + K F DRLY+ Sbjct: 115 GGALPQVTLSEL-ESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYI 173 Query: 185 NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 LQRH G +R E V++AY +LPLVATN+ F + + YEAHD L+ +A Sbjct: 174 ELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGA 233 Query: 239 V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q DR R+T HY K++SEMV++F+DLPEA+ENTVEIA+RC+ + Sbjct: 234 YVDQQDDRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCA--------FQAYRRD 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +E ELR +A AGL+ RL I +DY +RLDFEL +I M F GYF Sbjct: 286 PILPKFADDEVEELRKQAHAGLKARLE--VIPHAASVEDYTKRLDFELGIIEGMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI+WAK+ IPVGPGRGSGAGS+ AYALT+TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 344 LIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K Sbjct: 404 FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IP + PVS++ +AD+ R RE + V RLL Q++EGL R+ASTHAAG+VIGD Sbjct: 464 MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + G + Sbjct: 524 RPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPL 583 Query: 597 D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ IP DD +Y L + T+ +FQ+ESSGM AL+ M+P Sbjct: 584 HIAADGTELYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPT 643 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 CIEDI+ALV+LYRPGP++NI Y KNG ++ SIHPLID +L+ETQG+I+YQEQVMQI Sbjct: 644 CIEDIVALVALYRPGPMENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQI 703 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+++GYSL AD+LRRAMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+ Sbjct: 704 AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFAN 763 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817 YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M ++ +K+ + ++ R + + + Sbjct: 764 YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWV 823 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868 PP VN FKV D + Y+L A+K VG + I + DKPF +L D Sbjct: 824 PPCVNRSDATFKVADGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDL 883 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 RVD K++ +R LE L +GA D +R ++ +LD + Y+ + + + + ++F Sbjct: 884 ARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG 943 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IK 981 E G + L + R E + +GFY SGHPLD Y L++ Sbjct: 944 -EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFM 1002 Query: 982 GYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +E + N RLA +V +Q++K+ +G+R + S+P YE F Sbjct: 1003 TLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLF 1056 >gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1158 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|189439008|ref|YP_001954089.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A] gi|189427443|gb|ACD97591.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A] Length = 1185 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 344/1064 (32%), Positives = 543/1064 (51%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + + ++ +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R LL + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V + Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|163782295|ref|ZP_02177293.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159882328|gb|EDP75834.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 1167 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 391/1060 (36%), Positives = 582/1060 (54%), Gaps = 60/1060 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA+ + +++ K A+ ++D NLF + +F + GI+P Sbjct: 7 DFVHLHLHTQYSLLDGAIKIEDLVKKAKEFGYRAVGMSDHGNLFGSFQFYKALKKEGIKP 66 Query: 70 IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG + +G ++L+ G + L +L + Y + Sbjct: 67 IIGMEAYFTTGSRFDRKTKGSEDNITDKYNHHLILIAKNDTGLKNLFKLSTLAY-KEGFY 125 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L++ G EGLI LT G N +Q AE+ + FK +FG+ L++ L Sbjct: 126 YKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINETQKAEEWVKKFKDIFGEDLFLEL 184 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--- 242 Q + ++ ++++A + + L+ATN+S +L+ ED EAH LMA+ V Sbjct: 185 QSNDIDEQAVANRNLIEIAKKYGVELIATNDSHYLNPEDREAHTTLMAIQMKRTVHDMTK 244 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKE 299 R H+ + + Sbjct: 245 GGFRCANDGLHFASPEEVWRKFEGKFDGWERALLNTLEVMDRTADSFDLFETSGYLLPEY 304 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ LR+ AV GL+ R+A+G + ++Y +RL+FEL+VI RM F+GYFLI Sbjct: 305 QVPKDTTLEDHLRDLAVRGLKQRIAKG---QAKDTREYWERLEFELDVINRMGFAGYFLI 361 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI WAK N++PVGPGRGS AGS+ AY++ ITD+DP+R LLFERFLNP+R+SMPD D Sbjct: 362 VQDFINWAKNNSVPVGPGRGSAAGSLVAYSIGITDVDPIRHGLLFERFLNPERVSMPDID 421 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFCQD RD VI YV++KYG E VAQIIT+ ++AK LRDV RAL +PYS D+L KLI Sbjct: 422 VDFCQDNRDRVIEYVKDKYGRENVAQIITYNVMKAKQTLRDVARALGLPYSTADQLAKLI 481 Query: 480 PNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQK 517 P +SL+ + +FR+ + +D+L++I+ + Sbjct: 482 PQGDVQGTWLSLEEMYSTPMEVLKERYGAHRGDIEDNVNKFRKLCKENAEIDKLVQIALR 541 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL RH S HAAG+VI +PLS L+P++ D R TQF+M +E GL+K DFLGLK Sbjct: 542 LEGLTRHTSLHAAGVVIAPKPLSDLIPLFYD-RDGAVATQFDMTKLEDMGLLKMDFLGLK 600 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT L+ D + +R +VD +P DD + + LL T G+FQLES GM++ L+ ++ Sbjct: 601 TLTELKGMRDLVKERRGEEVDFLSLPMDDPKVFELLQDGNTTGVFQLESRGMKELLKRLK 660 Query: 637 PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 PD +DI+A+++LYRPGP+ + + Y NRK+GKE + P ++ +LKET GVI+YQEQ Sbjct: 661 PDSFDDIVAVLALYRPGPLKSGLVDRYINRKHGKEPVDYPFPELEEVLKETYGVIVYQEQ 720 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM+++++L+G++ EAD LR+A+GKK K+ M++ +E+FI G+ + G + ++E + Sbjct: 721 VMRMSRVLAGFTPGEADTLRKAIGKKKKDLMEQMREKFIKGSVERGFPEDKITKLWEDIE 780 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 KFA Y FNKSH+ AY ISY TA+MK HYP EF A +T E ++ + I +DA+ Sbjct: 781 KFASYSFNKSHSVAYGYISYWTAYMKAHYPAEFFAVKLTTEKNDNKFI-NLIKDAKIMGF 839 Query: 815 QIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873 +I+PP VN V F + R + + + IKGVG A+ I EA D+ F ++DF SRVD Sbjct: 840 EILPPDVNRSDVGFIIEGEREVRFGIGRIKGVGEEAAKAITEARKDREFRGIQDFVSRVD 899 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 +K+N++VLE L+ AGA D G R +LL + + + + ++F + Sbjct: 900 GRKVNKKVLECLIKAGAFDFTGTKRDELLD------RLSSSGKNMSSLAQNSLFGGTQKK 953 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 I + E+ V+GFY SGHPLD Y+ +L EE +G+ Sbjct: 954 KKLDI----------NDILRMEKEVIGFYISGHPLDKYEKLLAGK-YTPIEELEGIGKGS 1002 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA V + Q KKTR GS + + + + E FP Sbjct: 1003 TLTLAGAVSNLQVKKTRNGSYMAILNLIDKSGMVEVVAFP 1042 >gi|159037409|ref|YP_001536662.1| DNA polymerase III subunit alpha [Salinispora arenicola CNS-205] gi|157916244|gb|ABV97671.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205] Length = 1177 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 346/1061 (32%), Positives = 534/1061 (50%), Gaps = 44/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F ++A AAG+ P Sbjct: 4 SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 I+G + + + + + + G L +L SR Sbjct: 64 ILGIEAYVAPESRFHKQRVRWGRPEQKSDDVSGSGGYTHMTIWARNKVGLHNLFKLTSRS 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R+ L E +GL+ TG SG + A K ++ +FG Sbjct: 124 FTEGFFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLEQYDEALKAAARYQDIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ + H +R ++ ++++ ++P V TN++ + +E EAHDVL+ V + Sbjct: 183 KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDTHYTHQEQSEAHDVLLCVQTA 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 VS +R R Y ++ + L+ + + Sbjct: 243 ANVSDPNRFRFDGSGYYIKSADEMRAIDSSDLWLQGCRNTLLVAEKVDPTGMFDFRNLMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + +E+ R + GL R G + + ++ ++EL VI +M F YF Sbjct: 303 RFPVPEGETDESWFRKETFKGLARRFPDGV------PETHVKQAEYELGVIIQMGFPSYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L+VADFIQWAK I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP+R+SMPD Sbjct: 357 LVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF + RR EVI+YV K+G ++VAQI TFG+++AKAA++D R L PY+ DR+ K Sbjct: 417 VDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476 Query: 478 LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +P + A+ R +DP V ++++ ++ +EGL R H Sbjct: 477 AMPPAVMGKDIPLTGIFDPKHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQTGVH 536 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 AAG+++ P+ +P+ R +TQF+ E GL+K DFLGL+ LT++ +L Sbjct: 537 AAGVIMSAEPIIDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDDALKN 596 Query: 589 LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + G VDL +P DD TY LL+ TLG+FQL+ MR L M+PD EDI A++ Sbjct: 597 IESNHGRTVDLLKLPLDDTPTYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDISAVL 656 Query: 648 SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701 +LYRPGP+ ++ Y RKNG ++I IHP + L+ T G+I+YQEQV + AQ+ Sbjct: 657 ALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQRAAQV 716 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL +AD+LRRAMGKK KE +DK+ F G NG S ++++L FADY F Sbjct: 717 LAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRGNGYSDEAIQTLWDILVPFADYAF 776 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NK+H A Y ++SY T ++K +YP E++AA +T D+ +K+ + + R+ IQ++PP V Sbjct: 777 NKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836 Query: 822 NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880 NT F I + LAAI+ VG IM +K + DF S+VD+ N++ Sbjct: 837 NTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKSAYTDFYDFLSKVDAVVCNKK 896 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +ESL+ AGA D + R LL + V++ ++F + Sbjct: 897 TIESLIKAGAFDSLDHPRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADPEVGTST 956 Query: 941 EKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992 + + E+ +LG Y S HPL + +L K G Sbjct: 957 TVMPAIVDGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGKEADTTIAALSEEGTIPDG 1016 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ Q++ T++G T + A E FFP Sbjct: 1017 TVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057 >gi|296454472|ref|YP_003661615.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp. longum JDM301] gi|296183903|gb|ADH00785.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. longum JDM301] Length = 1185 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 343/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R L + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V + Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165] gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165] Length = 1158 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 415/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS +S++ G + ++ A+ A+A+TD N + F +A +G Sbjct: 2 SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G + + + + + + LL GY + L+S+ Y Sbjct: 62 VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYV- 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + +WL E EG+I+L+GGS+G + +A + Q AE+ L +++ F + Y++L Sbjct: 111 EFPVVEKAWLAE-HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D R Q V + +PLVA N+ +FL + D+EAH++ +A+ S + R Sbjct: 170 CRTGRSDEERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDPKR 229 Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + Y ++ EM +F+DLP+A+ENT+ IA+RC+ +++ + Sbjct: 230 PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGE-----YFLPNFPTGD 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RLA + Y +RL EL+VI +M F GYFLIV Sbjct: 285 LSTEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP Sbjct: 405 FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR V Sbjct: 524 FSPLYCDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPPV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD +T+ LL T +FQLES GM+ + +QP EDIIALV+L+RPGP++ Sbjct: 584 RIESIPLDDEKTFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q+ F GA K GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + ++PP +N+ F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L AIKGVG ++EA D F L D +RVD +K+NRR E L+ Sbjct: 824 VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 AGA D G R L+++L++ + + K ++F T + + Sbjct: 884 AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 +NE+ LG Y SGHP+ + L E T RG +A +++ + Sbjct: 944 TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KGSRIG T + + + + F Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029 >gi|317481576|ref|ZP_07940612.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|316916936|gb|EFV38322.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] Length = 1185 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 343/1064 (32%), Positives = 543/1064 (51%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I + A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + + ++ +A + PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R L + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V + Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|312132448|ref|YP_003999787.1| dnae [Bifidobacterium longum subsp. longum BBMN68] gi|311773120|gb|ADQ02608.1| DnaE [Bifidobacterium longum subsp. longum BBMN68] Length = 1185 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 343/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R L + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V + Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15] gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000] gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15] gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000] Length = 1143 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 486/1024 (47%), Positives = 671/1024 (65%), Gaps = 19/1024 (1%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+V S+YSLLEGA+ + I A + PA + D NLF ALE+S A AG+QPI Sbjct: 9 FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + + + + P+++LL GY L EL S YL Sbjct: 69 IGCAIPV-----VGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELPEPV 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + + E +EGLI+L+GG+ GP+D F + A L ++FGDR YV LQRH Sbjct: 124 VPWAKVAE-HSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHG 182 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E +V AY H++PLVATN+ F Y+AHD L+ ++ V Q +R RVT Sbjct: 183 LPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRRVT 242 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+H+ K EM +F+DLPEA +NT++IARRC+ + + E Sbjct: 243 PEHWFKPAEEMRKLFADLPEACDNTLDIARRCA----FMVHKRDPILPSFPTGDGRNEAE 298 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 EL ++A GL++RL + ++Y +RLDFEL +I +M F GYFLIV+DFI+W K Sbjct: 299 ELEHQAREGLKMRLE--GLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKA 356 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+RR+E Sbjct: 357 HGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREE 416 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488 VI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P VDRLCK++PN+PA PV+ Sbjct: 417 VISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTL 476 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 QAI + R ++A+ D +V L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+Y+D Sbjct: 477 AQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKD 536 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L +RG ++DL +PFDD +T Sbjct: 537 PRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDDAKT 596 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y LL + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP+DNI + + K G+ Sbjct: 597 YELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFGR 656 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEMD Q Sbjct: 657 KPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDLQ 716 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K RF+SGA + + + + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PVEF Sbjct: 717 KIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEFF 776 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 AASM+L++ N +K+ F QDAR+F I + P VN DF+V + + Y+L AI+ VG Sbjct: 777 AASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNVGLE 836 Query: 849 TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +H++ A+ PF + DF R+D +++N+R +E+L AGA D +R Q++ S D Sbjct: 837 AMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVASADV 896 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +AQ +R +F + G + + L K N + E +GFY +GHP Sbjct: 897 LIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLSKTENWNQVDLLDEELSAVGFYLTGHP 954 Query: 968 LDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 L+ +LR+ E++A G R+ +V +Q++ ++ G + +V+ S+P Sbjct: 955 LEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSDPTG 1014 Query: 1026 EYEA 1029 EYE Sbjct: 1015 EYEV 1018 >gi|167753692|ref|ZP_02425819.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216] gi|167658317|gb|EDS02447.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216] Length = 1287 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 347/1105 (31%), Positives = 555/1105 (50%), Gaps = 94/1105 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YS+L+GA +++ ++ + A A+AITD N++ F A AGI+ Sbjct: 70 PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC+ + +++ + K ++LL GY L ++VS + + Sbjct: 130 PILGCETYV-VRNRFEKDKDEKAGD----HLILLAKNLTGYHNLCKIVSYSFT-EGFYYK 183 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI L++ EGLI + G + +A N + AE+ + FK +FGD Y+ LQ Sbjct: 184 PRIDKKLLEQYH-EGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQL 242 Query: 189 HRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 H D +++L+ + + +N+ F+ ED AHD L+ + Sbjct: 243 HPSGDPRKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTG 302 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI------------- 284 + +R R T YLK+ EM +F D PEAL T+EIA + Sbjct: 303 RDLDDPNRMRYTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPP 362 Query: 285 ------------------LQVHAPILPRFIEKECDDIQKEEEN---------------EL 311 ++ + +++ E L Sbjct: 363 PPEFHMPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYL 422 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 ++ G +R +++ +R+ +EL+ I M F GYFLIV D+I+ A++ Sbjct: 423 KDLTYKGAHLRYG------AELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMG 476 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 + VGPGRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D RD+V+ Sbjct: 477 VSVGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVL 536 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------PAH 485 Y +KYG +RVAQI+TFG++ K A+RDV R ++ S+ DRL KL+P+ Sbjct: 537 HYCVHKYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGE 596 Query: 486 PVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + R + + L+ ++KLEG R HA G++IG L P Sbjct: 597 TPFDFCYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAP 656 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 M +DL V +F K +E GLIK DFLGL+TL++++ ++ + G+ VD+ IP Sbjct: 657 MAIAKDADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGIDVDIDNIPL 716 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY + + T G+FQ ES GM++ L ++P+ ED+IA+ +LYRPGP++ I + Sbjct: 717 DDAPTYEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIA 776 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G E + ++ L +T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK + Sbjct: 777 RKHGLEPVTYDIADMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRA 836 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +DK K +FI G SK G I I+ FA Y FNKSH+ YA I+YQT ++K HY Sbjct: 837 VLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHY 896 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P EF+AA ++ + ++++I + + ++ I+++ P +N +F + + LAA+ Sbjct: 897 PSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVRFGLAAV 956 Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900 KGVG I+ + F + DF RV+ +NR+ LE++ +AG D G+ R + Sbjct: 957 KGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCK 1016 Query: 901 LLQS----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSS 949 + ++ + +Y Q + + N +++F +G + + ++ Sbjct: 1017 FFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTL 1076 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQK 1007 E+ ++G Y S HPLD Y I+R M + RG I +A MV++ Q Sbjct: 1077 ETLGKEREMIGLYLSAHPLDDYAVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQNL 1136 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G G T + +E F Sbjct: 1137 VTKTGKPWGKFTLEDYNGTHEFALF 1161 >gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas sp. BAL3] Length = 1153 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 496/1037 (47%), Positives = 678/1037 (65%), Gaps = 24/1037 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S FVHL+V S+YSLLEGA+ + A PA+AI D NLF ALEFSQ AG Sbjct: 6 NSQGFVHLRVRSAYSLLEGAIKAGKLGKLAADAGMPAVAIADRTNLFGALEFSQYTRDAG 65 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPII C L + + + P++VLLV G++ L L S YL Sbjct: 66 VQPIIACALPV-----FGIGGHQAVRWAKTPTVVLLVQNEAGWRNLCALSSSAYLDAGEM 120 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + +EGLI+L+GG GP+D F + L T K FGDR YV L Sbjct: 121 AEPGVAWDQVVAR-SEGLILLSGGPDGPVDPLFAQGKTNEGAAALATMKSAFGDRFYVEL 179 Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH D R E +V+ AY HE PLVATN+ + ++HD L+ +A Q+DR Sbjct: 180 QRHGLEDEKRAEPGLVEWAYAHETPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQEDR 239 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R+T +H+ K+ M +F+DLPEA +NT++IARRC+F++ HAPILPRF + Sbjct: 240 RRITGEHWFKSAEAMRDLFADLPEACDNTIDIARRCAFLVNTHAPILPRFDT----GAGR 295 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E +EL ++A GL+VRL G I +Y RL++E+ +I +M F GYFLIV+DFI+ Sbjct: 296 SEADELAHQAREGLKVRL--GQITPAVPEAEYWSRLEWEVGIIQQMGFPGYFLIVSDFIK 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK++ IPVGPGRGSGAGS+ A++LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+ Sbjct: 354 WAKEHGIPVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQE 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI YVQ++YG +RVAQIITFG+LQA+A LRDVGR LQMP QVDRLCK++PN+PA+ Sbjct: 414 RREEVIDYVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAN 473 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 PV+ QAI + R +EAR A+P+V LLE + +LEGLYR+ASTHAAGIVIGDRPL +LVP Sbjct: 474 PVTLAQAIDLEPRLKEARDAEPAVRTLLETALELEGLYRNASTHAAGIVIGDRPLVELVP 533 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +Y+D RS +P +QFNMKW+E AGL+KFDFLGLKTLT+L ++ +L +RG D + +P D Sbjct: 534 LYQDPRSTIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAQDWNGLPLD 593 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY L+ + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP++ I Y +R Sbjct: 594 DARTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYIDR 653 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+ ++ +HP + +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRAMGKK KEE Sbjct: 654 KFGRAEVDYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKEE 713 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD Q+ RF+ GA + + +T + +IF+L+AKFA YGFNKSHAAAYA+IS+QT W+K ++P Sbjct: 714 MDFQRARFVKGALEKTVPETQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANHP 773 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840 VEF AASM+L++ N +K+ F QDA++F++ ++PP +N DF V + + Y+L Sbjct: 774 VEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLPPDLNRSSADFDVAWDDSRGVVLYALG 833 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+ VG +H++E F + DF RVD + +N+R LE L AGA D +R Sbjct: 834 AIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNRR 893 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL++ D + Y Q V R + ++F ++ + L+ R ++E + Sbjct: 894 QLVEQADVLMAYCQSVAAERASSQVSLFGGDQAHVG-RPRLKSVEPWVGPERLDHELSAV 952 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRK-GSRIG 1016 GFY SGHPLD L++ + E++ ++A +V KQ++ + + G + Sbjct: 953 GFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKFA 1012 Query: 1017 WVTFSEPAKEYEANFFP 1033 +VTFS+P E+E FP Sbjct: 1013 FVTFSDPTGEFEC-LFP 1028 >gi|271964395|ref|YP_003338591.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021] gi|270507570|gb|ACZ85848.1| DNA polymerase III alpha subunit [Streptosporangium roseum DSM 43021] Length = 1173 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 356/1058 (33%), Positives = 534/1058 (50%), Gaps = 39/1058 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L + ++ PAIAITD N+ A +F ++A AGI Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATGAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +P+IG + + + + + + A+G L++L S Sbjct: 62 KPVIGIEAYVAPASRHQKKPVLWGEPHQKRDDVSAGGYYTHMTIWAKNAKGLTNLMKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R Y ++ R+ L E +EGL+ TG SG + A F++L Sbjct: 122 RAYTEGFVRKWARMDAETLAE-HSEGLMATTGCPSGEVQTRLRLGQYDEALAAAAKFQEL 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG D Y+ + H +R + +++ +P + TN+S + E D +HD L+ + Sbjct: 181 FGRDNYYLEIMDHGLDIERRVRDGLTRISRDLNIPPLVTNDSHYTYESDATSHDALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 ++ DR R Y ++ + E + Sbjct: 241 TGKQLADPDRFRFDGSGYYIKTADEMRAVDSSDLWAEGCRNTLLVAEKVDPTGMFGFKNL 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + EE+ R + G+E R +G +++R +++FE+NVI +M F Sbjct: 301 MPTFPIPEGDSEESWFRKEIWKGMERRFPEGVD------EEHRAQIEFEMNVILQMGFPS 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNPDR+SM Sbjct: 355 YFLVVADFIMWAKNNGIRVGPGRGSAAGSLAAYALGITDLDPLPHGLIFERFLNPDRVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF + RR +VIRYV KYG ++VA I TFG+++AKAA++D R L PY+ D++ Sbjct: 415 PDVDIDFDERRRGDVIRYVTEKYGADKVAMIATFGTIKAKAAIKDAARVLGHPYALGDKV 474 Query: 476 CKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K P + + R+ D V +++ + LEGL R Sbjct: 475 SKAFPPAVMGKDIPLSGIFDKDHPRYNEAGELRKLYDEDVDVKSAMDLGRGLEGLIRQTG 534 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ L+ +P+ R + +TQF+ E GL+K DFLGL+ LT++ L Sbjct: 535 VHAAGVIMSSEVLTDYIPIMRRDSDGVIITQFDYPTCETLGLLKMDFLGLRNLTIIDDCL 594 Query: 587 DF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 A G K+DL +P DD +TY LL TLG+FQL+ GMR L M+PD EDI A Sbjct: 595 KMIEANTGTKIDLLKLPLDDRKTYELLGRGDTLGVFQLDGGGMRSLLRLMKPDNFEDISA 654 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 + +LYRPGP+ D+ Y RKNG + I IHP + +L T G+I+YQEQVM IA Sbjct: 655 VGALYRPGPMGADSHTNYALRKNGLQDITPIHPEFEESLQEILGTTHGLIVYQEQVMAIA 714 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++G+SL +AD+LRRAMGKK K E+DKQ E F G NG S ++++L F+DY Sbjct: 715 QKVAGFSLGKADLLRRAMGKKKKSELDKQFESFEQGMKDNGYSAAAIKTLWDILLPFSDY 774 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ I+++PP Sbjct: 775 AFNKAHSAAYGLVSYWTAYLKANYPSEYMAGLLTSVKDDKDKSALYLNECRRMGIKVLPP 834 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878 VN DF + + L+AI+ VG I+ A +K F +DF +V N Sbjct: 835 DVNDSDFDFTPRGTDVRFGLSAIRNVGGNVVDGIIAARREKTRFADFKDFLRKVPMVVCN 894 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +RV+ESL+ AGA D F + R L+ + ++KN +++F +G Sbjct: 895 KRVIESLIKAGAFDSFAHERKGLVMVHEQAVDSIIGIKKNEAQGQDSLFGAVEGAEDQTF 954 Query: 939 TLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNI 995 ++ + + + E+ +LG Y S HPL + IL G + Sbjct: 955 DVQIPPGEWDKTTLLQFEREMLGLYVSDHPLFGVEHILASGADCSIAALQDENRSDGQVV 1014 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ Q+K T+KG + E FP Sbjct: 1015 TVGGILSGVQRKVTKKGDTWVLTMLEDLEGAIEVMIFP 1052 >gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str. Tucson] gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str. Tucson] Length = 1162 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 412/1051 (39%), Positives = 601/1051 (57%), Gaps = 41/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL+VHS YS+++G + ++ + AA PA+AITD NL ++F A Sbjct: 1 MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG L + Q + + +L + + GYQ L L+SR Y Sbjct: 60 VGIKPIIGADLHV----------QSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E EGL++L+G G + + + E+ L +++ F D Y+ Sbjct: 110 GAAGPIIDRDWLIE-HREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA LP+VATN+ FL E+D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEENYLHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y+++ +M +F+D+PEAL N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYMRSEDDMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE L + +Y +RLD EL VI +M F GYFLI Sbjct: 284 GDMTTEDFLVLKSKEGLEERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNHVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDLVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVTQF+ +E AGL+KFDFLGL+TL+++ +L+ + R Sbjct: 523 TDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP +D +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PIDIAAIPLNDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EM KQ+ F GA GI ++V IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADMLRRAMGKKNPVEMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYR 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V + I Y + AIKGVG I+EA F L D C+R D KKLNRR+LE Sbjct: 823 FHVNNEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILE 882 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942 L+ +GALD G R L+ SL + K A K ++F + + Sbjct: 883 KLIMSGALDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLSEAPEQVEQSYAN 942 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001 V + E+ LG Y +GHP+ Y + + G + ++ T RG +V Sbjct: 943 VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V+ + T++G+RIG T + + E F Sbjct: 1003 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033 >gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4] Length = 1113 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 410/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I +D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ +GL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLEKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202] gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202] Length = 1157 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 415/1045 (39%), Positives = 602/1045 (57%), Gaps = 38/1045 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP FVHL+VHS +S++ G + +++ AAD A+A+TD N ++F ++ A+GI Sbjct: 2 SPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + + ++ V + LL +GY + L+S Y Sbjct: 62 KPIIGADILV----------RSESESEEVYELTLLAKNNQGYHNITLLLSMAYQQGYV-D 110 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + +WL E EG+I+L+GG SG + +A + + AE +++ F + Y ++ Sbjct: 111 LPLVEKAWLAEY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSVC 169 Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D R S +V A +P+VA N+ +FL E+D++AH++ +A+ S + RP Sbjct: 170 RTGRADEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRP 229 Query: 247 R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +P Y ++ EM +F+DLP ALENT+EIA+RCS +++ Sbjct: 230 KKYSPQQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYF-----LPNFPTGDL 284 Query: 306 EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E L K+ GLE RLA + + Y +RL EL+VI +M F GYFLIV + Sbjct: 285 TTEEFLIKKSEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVME 344 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 345 FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 404 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP D Sbjct: 405 CMDGRDRVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPD 464 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A A + + E +D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 PGMTLE-KAFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 523 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + R V Sbjct: 524 SPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVR 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + IP +D +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ Sbjct: 584 IESIPLNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLES 643 Query: 658 IVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N K H + P+L+ T GVI+YQEQVMQIAQ L+GY+L A Sbjct: 644 GMVQNFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGA 703 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM Q+E F GA + I +A+ IF+L+ KFA YGFNKSH+AAYA Sbjct: 704 DLLRRAMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 763 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQT W+K HYP EF+AA M+ EMDN +KI + + ++PP +N+ F V Sbjct: 764 LVSYQTLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSV 823 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L AIKGVG I+EA D F L D +RVD KK+NRR ++L+ + Sbjct: 824 NEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIMS 883 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947 G+LD G R L+++L++ K + K ++F T + + + Sbjct: 884 GSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWS 943 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 V + E+ LG Y SGHP+ + L E T RG + +A +V+S + Sbjct: 944 EQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVA 1003 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++GSRIG T + + + + F Sbjct: 1004 VTKRGSRIGIATIEDRSGKLDITLF 1028 >gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH] Length = 1094 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 409/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I +D+ ++LLV GY L +L+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCKLLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ +GL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264] gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis E264] Length = 1278 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 410/1046 (39%), Positives = 607/1046 (58%), Gaps = 38/1046 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 103 APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 161 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + I +D+ ++LLV GY L EL+S+ +L Sbjct: 162 RDAGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLT 211 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SWL+ +GL+ L+G G I A + A + + ++F Sbjct: 212 NQYRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGF 271 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 272 YLELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 331 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 332 NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDG 391 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE RLAQ + Y QRLDFE I +M F GYF Sbjct: 392 MSL----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYF 447 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 448 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 507 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 508 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 567 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 568 LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 627 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 628 GKLTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 687 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPG Sbjct: 688 ENWSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 747 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 748 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 807 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 808 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 867 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 868 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQ 927 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ Sbjct: 928 ADGKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALI 987 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGALD +R QLL S+ + A+ N +F G + + L Sbjct: 988 RAGALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1044 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + Sbjct: 1045 DDKRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1101 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1102 QMTQRGK-MVIALLDDGTGQCEVTVF 1126 >gi|326333480|ref|ZP_08199722.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] gi|325948725|gb|EGD40823.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] Length = 1194 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 357/1073 (33%), Positives = 550/1073 (51%), Gaps = 53/1073 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SFVHL VH+ YS+L+GA L+ + + + + PAIA+TD N+ A +F +KA A Sbjct: 5 SKDSFVHLHVHTEYSMLDGASLLDGLFKRTSELEMPAIAMTDHGNMHGAYDFWKKAKAHD 64 Query: 67 IQPIIGCQLDIDM--------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 ++PIIG + I D + + + + EG L Sbjct: 65 VKPIIGIEAYITPNTPRSERKRVRWGKGDAAQEGGDDVSGGGAYTHMTMWAENTEGMHNL 124 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L SR L + R+ L E ++G+I+ TG SG I + A K Sbjct: 125 FRLSSRSSL-EGYYFKPRMDKEILAE-HSKGIIVSTGCPSGAIQTRLRLGQWEEALKEAG 182 Query: 173 TFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 + +FG D +++ L H ++ +++L T + VATN+S + + ED AH+ Sbjct: 183 ELQDIFGKDNVFLELMDHGISIEKRVRDDLLKLGKTMGIRPVATNDSHYNNPEDAGAHEA 242 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 L+ V + +++ + + + +++ E I + +L Sbjct: 243 LLCVQSGSRMTEPPYSKGGKRFAFEGSGYYIKSAAEMRELWGRQDLIDACDNTLLIAERC 302 Query: 291 ILP------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + ++ + + EE+ LR + G+E+R Q+ + R++FE Sbjct: 303 DVEFTESTGGYMARADIPEGETEESWLRKETWRGIELRYPG-----EKLTQEVKDRVEFE 357 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI + + GYFL+VADFIQW+K N I +GPGRGSGAGS+ AYAL ITD+DPL L F Sbjct: 358 IDVILQKGYPGYFLVVADFIQWSKNNGIRIGPGRGSGAGSIVAYALKITDLDPLEHGLFF 417 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R SMPDFDIDF RR E I+YV KYG E+VAQI TFG ++AK A++D R Sbjct: 418 ERFLNPERPSMPDFDIDFDDHRRGETIKYVTEKYGAEKVAQIATFGRIKAKQAIKDAARI 477 Query: 465 LQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEIS 515 L ++ DR+ K +P D V + + FR DP V ++ E + Sbjct: 478 LDHGFAIGDRITKALPPDVMGKGVPLKELFNPDHKRYGEGGDFRALHDTDPDVRKIYETA 537 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 LEG R HAAG+++ P+ +VP+ + VTQF E GL+K DFLG Sbjct: 538 LGLEGQIRQTGIHAAGVIMASEPIIDIVPLMEPKQDGQVVTQFEYPTCEALGLVKMDFLG 597 Query: 576 LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L L L+ +LD + R + + L +PFDD TY L+ TLG+FQL+ GMR L Sbjct: 598 LSNLHTLEDALDNIRANRDIDLVLEEVPFDDKPTYELMQRGDTLGVFQLDGGGMRALLRS 657 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGV 688 M PD DI A+ +LYRPGP+ D+ Y +RKNG+E IV IHP ++ L ET G+ Sbjct: 658 MLPDRFADITAVSALYRPGPMGADSHNKYAHRKNGREPIVPIHPELEEPLAEVLGETYGL 717 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM IAQ+L+G+SL +AD LRRAMGKK K E+DKQ F +G + G S++ Sbjct: 718 IVYQEQVMSIAQVLAGFSLGQADNLRRAMGKKKKAELDKQYAGFQAGMLERGYSQSAIDT 777 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 I+E+L F+DY FNKSH+AAY V++Y TA++K +YP E++AA +T ++ +K+ + + Sbjct: 778 IWEILLPFSDYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYLNE 837 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867 R+ I ++PP VN DF I + L A++ VG I+EA + F+ D Sbjct: 838 CRRMKIAVLPPDVNESSHDFTAVGTDIRFGLTAVRNVGAQVVDGIVEARTSKGRFEDFND 897 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F ++V + N+RV+ESL+ AGA D + R L+ + +++N +++F Sbjct: 898 FLAKVPDRVCNKRVIESLIKAGAFDDMKHLRRSLVAIHETAVDQYVDIKRNEAIGQDSLF 957 Query: 928 AHEKGTFSDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 + + + + + +E+ +LG Y S HPL + +L Sbjct: 958 GGLDDGDGVEFGVSVAIPEMDEWDKMTLLGHEREMLGLYVSDHPLMGLEHVLANGTDCTI 1017 Query: 984 EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + + + ++ +V + ++ T+KG VT + E FP Sbjct: 1018 GQLMTDESRPHNSTVTVSGLVTNVNRRITKKGDAWATVTLEDLEGSVEVLLFP 1070 >gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1158 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R + Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTSRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ + Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|212710382|ref|ZP_03318510.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM 30120] gi|212686964|gb|EEB46492.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM 30120] Length = 1144 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 409/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+AA PA AITD NL ++F A AGI+PIIG ++ Sbjct: 1 MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFYME--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + V + +L EGYQ L L+S Y G I WL + Sbjct: 58 -------SEQLGDEVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + + + + ++ L ++ F D Y+ L R D Sbjct: 110 EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTYFPDAYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+LA LP+VATN+ F+ D++AH++ +A+ ++ RP+ +P YL+ E Sbjct: 170 VELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLRTEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEALEN+VEIA+RC+ +++ + E E+ L +A GL Sbjct: 230 MCELFSDIPEALENSVEIAKRCNVTIRLGEYF-----LPKFPTGDMETEDFLVMRAKEGL 284 Query: 320 E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E L + +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEVEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +L IP DD +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F G+ KNG+ +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F + + + V + E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ T RG + +V+S + T++G+RIG T Sbjct: 944 YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + + F Sbjct: 1004 DDRSGRLDIMLF 1015 >gi|163846593|ref|YP_001634637.1| DNA polymerase III subunit alpha [Chloroflexus aurantiacus J-10-fl] gi|222524387|ref|YP_002568858.1| DNA polymerase III subunit alpha [Chloroflexus sp. Y-400-fl] gi|163667882|gb|ABY34248.1| DNA polymerase III, alpha subunit [Chloroflexus aurantiacus J-10-fl] gi|222448266|gb|ACM52532.1| DNA polymerase III, alpha subunit [Chloroflexus sp. Y-400-fl] Length = 1248 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 347/1055 (32%), Positives = 525/1055 (49%), Gaps = 46/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G + I + A +IA+TD ++ A+EF + A AGI+P Sbjct: 3 DFVHLHVHSEYSLLDGYATTKGITQRAAELGMDSIALTDHGVMYGAMEFYEAAKKAGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + + +G ++LL GY+ L++L +R +L GK Sbjct: 63 IIGVEAYMAPGSLSDPMTKGAK---NYFHLLLLAQNEVGYRNLVKLTTRAHLDGMGKGVF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L E EGLI+ + +G + + A + ++ L G DR Y+ Sbjct: 120 ARPRIDRQLL-EAHHEGLIVTSACLAGEVLHYLKAGDRRAAVETAAYYRDLLGPDRYYLE 178 Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++V++ +PLVAT+++ F+ ED +MA+ + ++ Sbjct: 179 LQLHDNTPELEPLNDELVKIGRELGIPLVATSDAHFVRPEDKATQHKIMAMGMNMTYAEF 238 Query: 244 DRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 D E LENT IA C L+ LP F Sbjct: 239 CAREYAMDESYHILSGEQMWERFKRYGTEPLENTRRIADMCRLKLEFGRVQLPVFELPPG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G +Y RL +EL+VI + F Y LIV Sbjct: 299 HD----AASYLRLVCEEGLMRRF------NGQPPAEYMNRLAYELDVINQTGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ YAL ITD+DP++ LLFERFL+P+R+ MPD D Sbjct: 349 WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR E++ Y+ +KYG E VAQIIT+G+L AKAA+RD+GR L + +VDR+ KLIP Sbjct: 408 DFADSRRQEILDYIADKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P QA+ ++ P + L++ +QK+EG R THA G+V+ PL+ Sbjct: 468 ALPVGTTIAQALERVPELKQIYETQPHLRELIDEAQKVEGRMRSVGTHACGVVVSRTPLA 527 Query: 541 QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 +LVP+ R + + + F + K GL+K D LGL L+++ ++L ++ Q ++ L Sbjct: 528 ELVPLQRTTKDENALMAAFEGPTLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + L T +FQLES+GM + L ++P +ED+ A+V+LYRPGP++ I Sbjct: 588 DEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY KN +I +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ Sbjct: 648 PVYIQNKNNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK +E M + + F G + GISK IA ++EL+ FA Y FN+ HA Y ++SYQTAW Sbjct: 708 KKNRELMAENEAIFKQGCQRKGISKEIADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K +YPVE++ A +T +E + K +AR+ + ++PP VN F + Sbjct: 768 LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLAQPLP 827 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + L AIK VG I+ A A PF SLED C+RVD LN+R LESL Sbjct: 828 PGVTHQRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKRTLESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944 + AGALD +R Q L LD +K R ++F + + + Sbjct: 888 IKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLFDIFGEATTANPVVARIPL 947 Query: 945 ------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + E+ +LG S P+ + G A G + Sbjct: 948 PLIVESPADQKEVLLWEKELLGLNISDDPIAKALEGVDLSGATELGSIDAEHIGETLTFV 1007 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ ++ T+KG + + E FP Sbjct: 1008 GVLSGVRRIATKKGETMLVANLEDLTGSIEIVVFP 1042 >gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b] Length = 1150 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 512/1040 (49%), Positives = 684/1040 (65%), Gaps = 21/1040 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VH+++SL EGAL+++ ++ D+ PA+AITD+NNLF ALEFS+KA Sbjct: 1 MSAGVGFVHLHVHTAFSLREGALTISRLIGLAEKDEMPALAITDSNNLFGALEFSEKAAK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI QL +D D + IVL+ + GY LI L + +L + Sbjct: 61 AGLQPIPAIQLTVDFGDGTQSLTADGRGN-----IVLIAKSEAGYANLIRLATCAWLGPE 115 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ + + L +E LI LTGG G +D + A RL + LF RLYV Sbjct: 116 LGETPHVTMEQLSASSSE-LIALTGGPEGGLDTLLARGRPEQARARLEALEPLFDGRLYV 174 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH ++R E Q++ LA+ LPLVA N F + ED+EAHD L+ +A TV Sbjct: 175 ELQRHGLDHERRVEPQLLDLAFRRGLPLVAANEPFFAAAEDHEAHDALLCIADGTVTGVA 234 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKEC 300 +R R++P HY K R EM+++F+DLPEA +TVEIARR + PI+PRF+ E Sbjct: 235 ERRRLSPQHYFKTRKEMLALFADLPEATASTVEIARRVAVRATKRKPIMPRFMRDGEGGG 294 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + ++ E ELR +A GLE RLA A G + Y RL FEL+ I +M+F GYFLIV Sbjct: 295 EALEVIETRELRRQAQEGLEARLATHPPAPGQTRETYEARLAFELDTIEKMRFPGYFLIV 354 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI++AK IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+RMSMPDFDI Sbjct: 355 SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERMSMPDFDI 414 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ RR+EVI YV+++YG +RVAQIITFGS A+ LR VGR L+MP QVD+L KL+P Sbjct: 415 DFCQSRREEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 474 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +PA PVS +A+A + + REA D V RL +I+ LEGLY +ASTHAAG+VI DRPL Sbjct: 475 QNPAKPVSLAEAVAGELKLREAIAEDGKVARLFKIAGSLEGLYSNASTHAAGVVIADRPL 534 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+YRD +SD+P TQFNMKW ++AGLIKFDFLGLKTLT+L ++D + +R DL+ Sbjct: 535 DTLVPLYRDPKSDMPATQFNMKWADEAGLIKFDFLGLKTLTVLATAVDLVRRRVADFDLA 594 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP +D +TY +L T+G+FQLES+GMR+AL M+ D EDIIALV+LYRPGP+ NI Sbjct: 595 AIPLEDPQTYEMLGRGETVGVFQLESAGMRKALVDMRADHFEDIIALVALYRPGPMANIP 654 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 Y K G E+ IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGK Sbjct: 655 TYCAVKLGDEEADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGK 714 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIK EMD Q+ERF+SGA + G+ A IF+LLAKFADYGFNKSHAAAYA+I++QTAW Sbjct: 715 KIKAEMDAQRERFVSGAVERGLEPAKASEIFDLLAKFADYGFNKSHAAAYALIAFQTAWF 774 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834 K HYPVEFLAASMTL+ N +K+ +F +AR+ I + PPS+ VDF V Sbjct: 775 KAHYPVEFLAASMTLDKGNTDKLAEFRNEARRLGIAVEPPSIRRSGVDFDVAPGADGALA 834 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I Y+L+A+KGVG A I+ + D+PF L DF R++ +++N++VLE+L GA D Sbjct: 835 IRYALSAVKGVGEGQAASIVRSRGDEPFRGLGDFARRINPREVNKKVLENLACCGAFDEM 894 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 R +++ +++ I A ++R +F G S+++ L K +S + + Sbjct: 895 ESDRARVVGAIETILAAANRTAEDRQLGQNALFG---GGPSEELALPKAEPWTASEKLKR 951 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKG 1012 E GF+ +GHPLD + +L K + + E A ++ RLAA+V+ + +++T+ G Sbjct: 952 EFDAAGFFLTGHPLDSFAGVLAKRRLTRWAEFTAAVKRGATAARLAAVVLDRAERRTKSG 1011 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 S++G V S+ + +YEA F Sbjct: 1012 SKMGIVQLSDDSGQYEAILF 1031 >gi|291285989|ref|YP_003502805.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883149|gb|ADD66849.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM 12809] Length = 1179 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 392/1048 (37%), Positives = 603/1048 (57%), Gaps = 33/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKAC 63 + S FVHL +H+ YSLL+GA+ + +++ KI P + I+D + ++F ++A Sbjct: 1 MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A I+PI+GC++ + T + +VL +G L +LVS + Sbjct: 61 ANDIKPILGCEVYVAPDSRFNTTYE--RGQERNHHLVLQAVNNKGLSNLQKLVSLAQF-E 117 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 R+ + + +EGLI ++ +G I R + A ++ +FG D Sbjct: 118 GFHYKPRVDKEIMAQY-SEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDNF 176 Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q + ++ +++++ +PLVATN+ +L++ D+ +H+VL+ + + ++ Sbjct: 177 FLEIQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTIN 236 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 +R + ++K EM + F ++P+AL NTVEIA RC+ + LP + E Sbjct: 237 SPNRFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEG 296 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 I + L + A GL +LA+ Q Y R+ E +VI F+GYFLIV Sbjct: 297 YTIS----SYLEHLARKGLHEKLAKIP---SEKHQIYYDRMQKEFDVIIGKNFAGYFLIV 349 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF+ +++ IPVGPGRGSGAGS+ AY+L ITD+DP+ F+LLFERFLNP+R SMPDFDI Sbjct: 350 WDFMNYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDI 409 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC R++VI+YV+ KYG +RV+QIITFG L ++ +RDVGR L++P VD+L K IP Sbjct: 410 DFCVKGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIP 469 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +DP + +A+ D R+ A + +L + KLEGL R+ HAAGIVI D+PL+ Sbjct: 470 SDPGMTL-RKALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLN 528 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLS 599 + VP+ +++ + QF +E GL+KFDFLGL LT++ +++ RG +D++ Sbjct: 529 EYVPL-CRGQNNEVIAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGEDLDIA 587 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP D+ + Y LL+ T +FQLESSGM+ L+ ++P+ EDIIALV+LYRPGP+++ + Sbjct: 588 SIPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGM 647 Query: 660 V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + + RK G+E+I I P ++ +LKET+GV+IYQEQVMQIAQ++ GYSL AD LRRAM Sbjct: 648 LDSFVKRKYGEEEIDYIFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNLRRAM 707 Query: 718 GKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 GKK EM+KQK+ F I GA G +A ++F+ LAKFA YGFNKSH+AAYA Sbjct: 708 GKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHSAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQTA++K YPVE++AA ++ E+D +KI F ++ + I ++PP++N V+F++ Sbjct: 768 LISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGVNFEI 827 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I++ L AIK VG ++ + F ++ DFC RVD + N+RVLESLV AG Sbjct: 828 EGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLESLVKAG 887 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A DC G +R Q LQ ++ + Q K +I A E+ ++ Sbjct: 888 AFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFPDVEEM 947 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ VL FY S HPL +Y IL+ I E +I + +V ++ Sbjct: 948 PENELLKMEKEVLDFYISNHPLAIYNNILKTFTI-PIGEVANPDSEGDIVIGGLVKHVKR 1006 Query: 1007 KKT-RKGSRIGWVTFSEPAKEYEANFFP 1033 T +KG ++ + + E E FP Sbjct: 1007 IVTKKKGEKMAFANVEDMDSEVEVVVFP 1034 >gi|257066179|ref|YP_003152435.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] gi|256798059|gb|ACV28714.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 1148 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 360/1050 (34%), Positives = 584/1050 (55%), Gaps = 46/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G ++ +LD+ ++AITD ++ +EF ++A GI+PI Sbjct: 5 FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D+ + ++LL +GY+ LI++VS Y ++ R Sbjct: 65 IGCEVYVSENDHTIKEASNR----RYYHLILLAKNMDGYKNLIKIVSEAY-VNGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + ++++ +E +I L+ +G + + N + A++ +++ FG Y+ LQ H Sbjct: 120 VSFDFIKKY-SEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNH 178 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ ++ + ++ ++PLVATN+ ++++ED DVL+ + +V +DR ++ Sbjct: 179 GIKEQNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKM 238 Query: 249 T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + YLK+ +EM +F A+ENT +IA +C+ H P LP F + + + Sbjct: 239 PASEFYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTK---VEEGLTD 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL G ++ R R D E+ VIA M + YFLIV DF+++A Sbjct: 296 LEYLKKLVDQGLIK-------KYGSISEKIRSRADKEIKVIADMGYVDYFLIVWDFVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++N+I VGPGRGS AGS+ +YAL IT IDPL++ L+FERFLNP+R+SMPD DIDF R Sbjct: 349 RENDIAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+V+ YV YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP + Sbjct: 409 DKVVEYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A S+F+E +D RL++ ++K+EGL RH S HAAG+VI L+ ++P+ Sbjct: 469 D-KAFDSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPLAL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 +DL VTQ++M IE+ GL+K DFLGL+ LT+++ ++ + + RG+ VDLS I +D Sbjct: 528 S--NDLVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLSKIDVNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T+GIFQ ES+GMR L+ ++P +D+IA SL+RPGP+D I Y + KN Sbjct: 586 NVIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK M+ Sbjct: 646 NPADVTFIDPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVME 705 Query: 727 KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 + + F I G +NG+ ++ A I++ + FA Y FNKSH+AAY++++ Sbjct: 706 ENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAAYSLVAI 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YP E++A ++ MD K+ + + + I+++PP VN +F V + + Sbjct: 766 QTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEFSVEEGK 825 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I + L+ IK VG+ I++A D F + +DF RV DS+ LN++ +ESL+ AGA Sbjct: 826 IIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D Y+R L+ + K N+ + + +++ + Sbjct: 886 FDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKEDVRIQEINEFPKKT 945 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVA-----TIRGNNIRLAAMVVS 1003 + + E+ VLGFY S HPL L Y++ + + + +A ++ + Sbjct: 946 KLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFVSMAGVITN 1005 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K + T+K + + T + E FP Sbjct: 1006 KSEIMTKKRQLMCFATLEDMQGSIEIVIFP 1035 >gi|33865566|ref|NP_897125.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102] gi|33632735|emb|CAE07547.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8102] Length = 1172 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 373/1049 (35%), Positives = 580/1049 (55%), Gaps = 33/1049 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA L ++++ PAIA+TD ++ A+E + + ++P Sbjct: 2 AFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L++L S +L + Sbjct: 62 IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L+ +EGLI+ T G + +A VA ++++FG+ Y+ Sbjct: 118 FSRACIDKHLLKTY-SEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFYLE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + LVATN++ +LS++D EAHD L+ V ++S + Sbjct: 177 IQDHGSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K EM +F D P+ + + + ++ + + + + Sbjct: 237 RLRYTGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR GL RL + ++Y +R+ EL ++ +M F YFL+V D Sbjct: 297 EGHTAVTYLREVTEQGLRERLE--LSSDASIPENYAERMAHELKIMEQMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 355 YIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 415 CIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+A+ + FRE +DP V R ++++ ++EG + HAAG+VI P Sbjct: 475 RGKPAKLKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT++ K+L+ + G ++D Sbjct: 535 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRLD 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P +D +T+ LL GIFQLESSGMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 594 PDKLPPEDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR Sbjct: 654 GLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GA++ G+ + ++ +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 714 AMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ +K++++ + I++MPP VN DF +RI Sbjct: 774 TAYLKAHYPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFTPNGDRI 833 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A++ +G R ++ + +D PF SL D C R+ S LNRR LESL+ GALD Sbjct: 834 LFGLSAVRNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGALDSM 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944 +R QL+ LD + +A K+R + N+F + + Sbjct: 894 DPAANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAAPVA 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + + E+ +LGFY S HPL P R + G + M+ Sbjct: 954 DYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAKVSAVTMITEL 1013 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q TRKG + + + + EA FP Sbjct: 1014 RQVTTRKGDGMAILQLEDLSGSCEAVVFP 1042 >gi|256827611|ref|YP_003151570.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM 15641] gi|256583754|gb|ACU94888.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM 15641] Length = 1165 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 344/1052 (32%), Positives = 539/1052 (51%), Gaps = 42/1052 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65 +FVHL H+ YSLL+GA + +++ + A PA+AITD + E Sbjct: 2 AFVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKET 61 Query: 66 GIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GI+ PI GC++ D LK + P + ++LL T EGY L++LVS + +D Sbjct: 62 GIKVKPIFGCEIYFTTDDELK-----REGKPRLYHMILLAKTNEGYHNLVKLVSESH-VD 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R + L+ ++GLI + +G I R + A LF Sbjct: 116 NFYYKPRTTFAMLKRY-SKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGDF 174 Query: 183 YVNLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ LQ Q+ Q+A L +ATN+ +L+ +D +A D+++ + Sbjct: 175 YLELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGT 234 Query: 237 STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + V +R R + D + EM + +D PEA +NTVEIA +C+ +L+ + + Sbjct: 235 GSQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLERDSILPR-- 292 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARM 351 + E + R + +GL R +G + + +R + E VI + Sbjct: 293 ---FPVPEGETEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQ 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFLIV ++I WAK + I VGPGRGS AGS+ YA+ ITD+DPL + LLFERFL+ + Sbjct: 350 GFPAYFLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+ MPD D+DF R +VI +V+ YG + ++ +ITFG LQAK A+RD R L PY Sbjct: 410 RVEMPDIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGV 469 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DRLCKLI N+ + QA+ + + A ++ +++ +Q +EG R HA Sbjct: 470 GDRLCKLIGNELGITI-QQALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACA 528 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +I PL+ VP+ RD + +TQ++ + + GL+K DFLGL+TL ++ ++ D + Sbjct: 529 TIICRDPLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKA 588 Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R + +D S I +D E + L+ G+FQ+E + M+P DI+A ++L Sbjct: 589 RHGIDIDPSAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALN 648 Query: 651 RPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + Y +R +GK ++V + P+L+ET G I+YQEQ+MQI+ +SG+S Sbjct: 649 RPGPLQNGFVDDYVDRVSGKSQVVYYDDRLRPILEETYGTIVYQEQLMQISMRMSGFSAG 708 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD LR+AMGKK E M +E + GA NG S ++ I+ KFA Y FNKSH+A Sbjct: 709 KADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHSAC 768 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YAV+ +TA++K HYP EF+AA ++ + N +K+ + IQ++PP +N+ V+F Sbjct: 769 YAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNVEF 828 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D + + LA ++GVG I+ P+ SL DF R+DS+ NR+ LE+L+ Sbjct: 829 TPTDEGVRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEALIK 888 Query: 888 AGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLE 941 AGA D GY+R QL+ +D + + A +K+R ++F + FS++ Sbjct: 889 AGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETPAP 948 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAM 1000 + E+ +L Y S HPL Y +L K+ + N M Sbjct: 949 DGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSKLSKFRLGDLADREHDIKNATFVGM 1008 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + S K T+KG+R+ T + EA F Sbjct: 1009 ISSVVTKLTKKGTRMATFTLEDTTGHVEAVCF 1040 >gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004] gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004] Length = 1144 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 405/1032 (39%), Positives = 591/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G +++ K+A PA AITD NL ++F A +AGI+PIIG ++ Sbjct: 1 MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGADFYVE--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + +L EGYQ L L+S Y G I WL + Sbjct: 58 -------SDLLGDEYAHLTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKYKA 110 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 GLI+L+GG G + + + +A++ L +++ F D Y+ L R D Sbjct: 111 -GLILLSGGRMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V++A LP+VATN+ FL +D+EAH++ +A+ ++ RP+ +P YL++ E Sbjct: 170 VEVAAEKNLPVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEAL+N+VEIA+RC+ +++ + E+ L K+ GL Sbjct: 230 MCELFSDIPEALQNSVEIAKRCNVTIRLGEYF-----LPQFPTGDMSTEDYLVEKSKQGL 284 Query: 320 E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E L + +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EDRLNFLYPDPQIRAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + Sbjct: 345 GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KL+P DP + +A A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 QLPEIYEADEEVRVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +LD + R +L IP DD ++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP+ + +V + Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 ELSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA GI+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFEEGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D C+RVD+KKLNRRV+E L+ +GA D G R L+ Sbjct: 824 GVGEGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F +++ V + E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQTDMFGVLAEKPEQVELSYASTPKWPEQVVLDGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ T RG + +V++ + T++G+RIG T Sbjct: 944 YLTGHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + E F Sbjct: 1004 DDRSGRLEIMLF 1015 >gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264] Length = 1174 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 410/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I +D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ +GL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYL 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RLAQ + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1158 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 602/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+G +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ +P Y ++ EM ++F+DLP+A+ENTV+IA RC+ +++ Sbjct: 228 KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYF-----LPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L D +RVD KK+NRR E L Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|213691712|ref|YP_002322298.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523173|gb|ACJ51920.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1185 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 344/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + Sbjct: 187 KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G D ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D + FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN ++ + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R L + +++ + ++F+ + ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + V R Sbjct: 958 MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRART 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1061 >gi|258653337|ref|YP_003202493.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233] gi|258556562|gb|ACV79504.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM 44233] Length = 1175 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 360/1061 (33%), Positives = 545/1061 (51%), Gaps = 40/1061 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL VH+ YS+L+GA L + + A PA+A+TD N+F A +F ++A A Sbjct: 1 MSNTDSFVHLHVHTEYSMLDGAARLGELFARTAELGMPALAMTDHGNVFGAHDFYRQARA 60 Query: 65 AGIQPIIGCQLDIDMQ-DNLKMT--------NQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 AG+ PIIG + + T + + I LL T +G L L Sbjct: 61 AGVNPIIGMEAYLTPNTSRFDKTRVRWADGGDDDVSGAGAYTHITLLSETTQGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L + R L E + GLI TG SG + + A F+ Sbjct: 121 ASRASL-EGFFYKPRADRELLSEY-SAGLIGTTGCPSGEVQTWLRIGNYDKALASAAEFR 178 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 + G + +V L H + +++LA +LP++ATN+ + ++ D AH+ L+ Sbjct: 179 DILGKENYFVELMDHGLSIETRVRDGLIRLARDLQLPMIATNDLHYTNKADASAHEALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 V + +R + D + + L + + V Sbjct: 239 VQSGKTLDDPNRFKFDADDFYLKSPAEMRALWADKYDLREACDNTLLIAERCSVAFDEAS 298 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ + + E+ + GL +R G + R++ D+E+ VI M F Sbjct: 299 SYMPRFPVPAGETEQTWFVKEVDKGLAIRFPGG------IPPEVRKQADYEVGVITAMNF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK + I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR+ Sbjct: 353 PGYFLVVADFINWAKDHGIRVGPGRGSGAGSMVAYAMRITDLNPLVHGLIFERFLNPDRV 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF + RR +VIRYV +YG +RVAQI+T+G+++AK A++D R L MP+S D Sbjct: 413 SMPDFDVDFDERRRGDVIRYVTERYGDDRVAQIVTYGTIKAKQAVKDSARVLGMPFSVGD 472 Query: 474 RLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 R+ K + P V L I + S FR DP V ++++ ++ LEGL R Sbjct: 473 RITKVMPPPVMGKDVPLSKIFEPSDPRYNEGTEFRTLVDTDPDVRKVVDTARGLEGLKRQ 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+++ PL L+P+ + + +TQF+ EK GLIK DFLGL+ LT+L Sbjct: 533 WGVHAAGVIMSSAPLLDLIPIMKREQDGAIITQFDYPTCEKLGLIKMDFLGLRNLTILDD 592 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + R + + L +P DD TY LL+ TLG+FQL+ MR L M+PD EDI Sbjct: 593 AVGNIRANREIDLVLEDLPLDDKATYELLSRGDTLGVFQLDGGPMRALLRSMRPDNFEDI 652 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQ 697 A+++LYRPGP+ ++ Y +RK G++ + IHP + +L +T G+I+YQEQVM Sbjct: 653 SAVIALYRPGPMGANSHNEYADRKTGRKPVTPIHPELADALQDLLGDTYGLIVYQEQVMA 712 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ L+GY+L AD+LRRAMGKK K E+D Q E F G + G S ++++L F+ Sbjct: 713 IAQHLAGYTLGAADLLRRAMGKKKKAELDAQYETFSGGMAGRGYSPHAIKTLWDILLPFS 772 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K+ + + R I++M Sbjct: 773 DYAFNKAHSAAYGMLSYWTAYLKANYPAEYMAALLTSVGDDKDKMAIYLAECRSMGIKVM 832 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 P VN +F I + L+AI+ VGT I+ D + DF +VD+ Sbjct: 833 APDVNASVQNFAPVGTDIRFGLSAIRNVGTGVVASIVACRKDKGAYTDFYDFLDKVDATA 892 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N++V+ESL+ AGA D G+ R LL ++K ++F Sbjct: 893 CNKKVVESLIKAGAFDSMGHPRKGLLMDHVRAIDEVLGLKKAEAIGQFDLFGEMSQEEKG 952 Query: 937 KITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992 ++ +R E+ +LG Y SGHPL + IL + + Sbjct: 953 DTFRGNVPDTEWDTKLRLGFEREMLGLYVSGHPLAGVEHILSAQSDASIPDVLDGTIPDR 1012 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I + ++ + Q++ T+KG T + A E FFP Sbjct: 1013 ALITVGGILTNLQRRLTKKGDPWASATLEDLAGGVEVAFFP 1053 >gi|320093964|ref|ZP_08025792.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319979098|gb|EFW10613.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 1179 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 351/1066 (32%), Positives = 551/1066 (51%), Gaps = 46/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL HS YS+L+GA + + A QPAI +TD LF A +F + Sbjct: 1 MASDP-FVHLHNHSEYSMLDGAAKTQAMAQEAARLGQPAIGLTDHGYLFGAYDFYTNCVS 59 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 AG++PIIG + + + + + + L+ + +G L Sbjct: 60 AGVKPIIGLEAYVTPGTSRFDRHKVTWGEPWQRSDDVSAGGSYNHLTLIAYSTQGMHNLF 119 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R L + EGLI+ TG SG + A Sbjct: 120 RLGSYASTDGQFGKWPRADKELLAKFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAE 178 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG + YV + H +R SQV+++A PLVATN+S ++ +ED + D L Sbjct: 179 LRDIFGPENFYVEVMDHGIDIERRVHSQVLEIARLMNAPLVATNDSHYVKKEDRKIQDAL 238 Query: 232 MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + ++ DR + D +++++ EM ++ +LP A + T+EIA RC Sbjct: 239 LCINSGARINDPDRFKFDGDGYFIRSSQEMRELWRELPGACDATLEIAERCDVRFTTTKE 298 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++ +++ + + GL R G D R++ +E +VI Sbjct: 299 GAN-YMPDFPVPEGEDKTSWFVKEVERGLNDRFPGG------IPDDVREQAQYEEDVIIS 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL VAD+I WAK I VGPGRGSGAGS+ AYA+ IT+++PL L+FERFLNP Sbjct: 352 MGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L + Sbjct: 412 ERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFK 471 Query: 471 QVDRLCKL-IPNDPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521 ++L K P +S+ I D + FR+ +P +++ + LEGL Sbjct: 472 MGEQLTKALPPAIMGKDISVAGIFDQGDKRYGEAAEFRKFYEDNPDTHEVVQYALGLEGL 531 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL+ LT+ Sbjct: 532 TRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTV 591 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L+ +A DL I FDD +TY LL TLG+FQL+ GMR L+ M+PD Sbjct: 592 VSDALENIAINGKEDPDLDHIRFDDAKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNF 651 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694 EDI A+ +LYRPGP+ ++ Y RKNG+++I IHP + L+ T G+I+YQEQ Sbjct: 652 EDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVYQEQ 711 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F G NG S+ +++++ Sbjct: 712 VMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMVDNGYSEESIKALWDVVV 771 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T DN ++ + + R +I Sbjct: 772 PFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRHMDI 831 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN +F I + L+A++ VG I+ A + F S +DF +V Sbjct: 832 TVLPPDVNASMGNFAPDGEAIRFGLSAVQNVGGPVVEAIVGAREEKGRFASFQDFLDKVP 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HE 930 N+R ++SL+ AGA D G++R LL D V++N ++F Sbjct: 892 QVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAVIDVKRNEAIGQFDLFGGLDDG 951 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---V 987 G S I + + + E+ +LG Y S HPL + L + + Sbjct: 952 AGGSSLAIDIPDLPEFDRKQKLAAEREMLGLYVSDHPLRGLEGALARHQDYEIAQVVGSE 1011 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++A +V K T++G+ T + + E FFP Sbjct: 1012 GAMADRVVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVEVLFFP 1057 >gi|288916170|ref|ZP_06410550.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f] gi|288352361|gb|EFC86558.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f] Length = 1178 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 356/1068 (33%), Positives = 560/1068 (52%), Gaps = 50/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA L ++ +++ PA+AITD ++ A +F ++A A Sbjct: 1 MPNS--FVHLHVHTEYSMLDGAARLKDMFSEVSRQGMPAVAITDHGYMYGAYDFYRQATA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIGC+ + + L + + + + G L Sbjct: 59 AGVKPIIGCEAYVAPESRLLKQRVRWGDPNQKSDDVSGGGSYTHMTMWARNETGLHNLFR 118 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L SR + + R+ + E EGL+ TG SG + A K + Sbjct: 119 LNSRASIEGHYIKWPRMDSEIIAE-HAEGLMATTGCPSGEVQTRLRLGHYDEALKAAAKY 177 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG + + + H +R ++ +A ++ V TN+S + E + H L+ Sbjct: 178 QEIFGRENFFCEIMDHGIEIERRVRDGLIDIARALDMRFVVTNDSHYTYESERATHSALL 237 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V ++ ++ +YLK+ +M +I D +A + E + ++ Sbjct: 238 CVQTASTIANPTFQFEGSGYYLKSAEQMYAI--DTSDAWQQGCETTLMIAERVEPAGMFT 295 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + EE+ R + AG++ R G +++R R+++EL VI M Sbjct: 296 KRNLMPRFPVPDGETEESWFRKETWAGMDRRFPDGFD------EEHRTRVEYELGVILSM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFLNPD Sbjct: 350 GFPSYFLVVADFIMWAKNQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPD 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR +VIRYV +K+G +R+AQI+T+G+++AKAA++D R L PY+ Sbjct: 410 RVSMPDIDIDFDERRRGDVIRYVTDKWGEDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAV 469 Query: 472 VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P + ++ R +D V ++++ ++ LEGL Sbjct: 470 GDRITKAMPPAVMGKDIPLSGIFDPKHARYSEAGEIRSLYESDADVRKVIDTAKGLEGLI 529 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLGL+ LT++ Sbjct: 530 RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + RG+KVDL + +D +Y LL TLG+FQL+ MR L M+PD E Sbjct: 590 DDAVRNVESNRGLKVDLMGLELNDPPSYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI A+++LYRPGP+ ++ + Y RKNG+++I IHP + L T G+I+YQEQV Sbjct: 650 DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPQLAEPLADILDTTYGLIVYQEQV 709 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++GY+L +AD+LRRAMGKK KE +DK+ F G NG S ++++L Sbjct: 710 MAIAQRVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKANGFSAEAIKMLWDILVP 769 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H A Y ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 770 FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++PP VNT D+ GDN I LAAI+ VG I+ K F S DF +VD Sbjct: 830 VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGVNVVESIVRNRKAKTRFASFPDFLDKVD 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L + + V+K ++FA + Sbjct: 890 AVVCNKRTVESLIKAGAFDSLGHTRRGLAEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEG 949 Query: 934 FSDKIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++FS + S+ E+ +LG Y S HPL + IL Sbjct: 950 GEEDAAPIFGVQEFSDQEWDKSLLLSLEREMLGLYVSDHPLLGVEHILAAKADCSIAALN 1009 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ Q+K T++G T + E FFP Sbjct: 1010 GGEYPDGSVVTIGGIISGLQRKVTKQGKLWALATVEDMGGGLEVMFFP 1057 >gi|257068282|ref|YP_003154537.1| DNA polymerase III subunit alpha [Brachybacterium faecium DSM 4810] gi|256559100|gb|ACU84947.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810] Length = 1191 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 378/1076 (35%), Positives = 561/1076 (52%), Gaps = 56/1076 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S FVHL VH+ YSLL+GA ++ ++ + QPA+AITD LF A EF + A A Sbjct: 4 SSSDDFVHLHVHTDYSLLDGAAKIDKLVAETVRQGQPAVAITDHGYLFGAYEFYKAAKDA 63 Query: 66 GIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 GI+PIIG + + ++ + + LL + G L Sbjct: 64 GIKPIIGIEAYVTPGTSRHDRTRTQWGTREQQLAGDDVSARGAYTHMTLLSHSTTGMHNL 123 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S L Q + R+ L + ++GLI TG SG + A K Sbjct: 124 FRLGSAASLEGQMGKWPRMDREILSQY-SDGLIATTGCPSGEVQTRLRLGQFDEAVKAAG 182 Query: 173 TFKKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG + +V L H R S+ ++++A PL+ATN+ +++E+D DV Sbjct: 183 EFQDIFGKEHYFVELMDHGLDIEKRVSKDLLEVAKAVGAPLLATNDLHYVTEQDATIQDV 242 Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ + + ++ DR + +YLK+ +M +F ++PEA +NT+ +A C + A Sbjct: 243 LLCINSGSRLNDPDRFKFGGSGYYLKSAQQMRELFREMPEACDNTLRVAEMCDVEFRTTA 302 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 ++ ++EE+ + GLE R G D ++R D+E++VI Sbjct: 303 EGAN-YMPHFPTPPGEDEESWFVKEVQRGLEYRYPAG------IPDDVQKRADYEVSVIL 355 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+V+D+I+WAK+ +I VGPGRGSGAGS+ AYA+ ITD+DPL LLFERFLN Sbjct: 356 QMGFPGYFLVVSDYIKWAKEQDIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFERFLN 415 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF RR EVI YV+ KYG +R+AQ+ T+G ++ K +L+D R L P+ Sbjct: 416 PDRVSMPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVATYGVMKTKNSLKDAARVLDYPF 475 Query: 470 SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 S DRL K +P +S++ I D FR DP V +++EI++ +EG Sbjct: 476 SMGDRLSKALPPTVMGKDISVKGIFDPEDKRYAEAGEFRRIHDEDPDVQKVVEIAKGVEG 535 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA +++ PL +VPM R +TQF +E GL+K DFLGL+ LT Sbjct: 536 LTRGWGVHACAVIMSSDPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGLRNLT 595 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L ++ +A+ DL +PFDD TY LL TLG+FQL+ SGMR L M+PD Sbjct: 596 VLSDAVANMARNGKTPPDLETLPFDDPATYELLQKGDTLGVFQLDGSGMRTLLRQMKPDQ 655 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQE 693 DI A+ +LYRPGP+ Y RKNG ++I IHP ++ L ET GV++YQE Sbjct: 656 FGDITAVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLAEILDETYGVLVYQE 715 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ AQ ++GYSL EAD+LRRAMGKK K E+DKQ F +G NG S ++E L Sbjct: 716 QVMQTAQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKSNGYSDAAVQALWETL 775 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FADY FNKSH+AAY V+SY TA++K ++P E++AA +T +N +++ + D R Sbjct: 776 LPFADYAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDCRHRG 835 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 I ++PP VN + F I + L+AI+ VG I++ + F S DF +V Sbjct: 836 ITVLPPDVNESDLYFSAVGEDIRFGLSAIRNVGAHVVEEIIKTREEKGAFTSFTDFLDKV 895 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929 N+R +ESL+ GA D G +R L+ ++ V++ ++FA Sbjct: 896 PLSVCNKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFADMFA 955 Query: 930 ---------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + IT+ + + E+ +LG Y S HPL + ++ + Sbjct: 956 GAGGDGEESMASGSAATITVPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIAQNSS 1015 Query: 981 KGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ S Q+K T+KG T + + FP Sbjct: 1016 TSISALADDGAVQDGTMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLLFP 1071 >gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis ATCC 49957] Length = 1147 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 476/1035 (45%), Positives = 659/1035 (63%), Gaps = 22/1035 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS+YSL EGA+ + + A PA+A+TDT N+F ALEFS+ G+QP Sbjct: 3 SFVHLHVHSAYSLAEGAIKAEKLAELAKAGGMPAVALTDTANMFGALEFSKACSGKGVQP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GCQL + + P +V L AEG + + L S+ +L D Sbjct: 63 IMGCQLFLTRGAADDRPEVLRLPPDP---VVALAMDAEGLENVQRLSSQGFLRDDPSGRP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGS-SGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 + L L++ G+ +LTG S +GP+ R A + L K+ F GDRL V L Sbjct: 120 TVTLELLKQ-HAAGVTLLTGPSTTGPLGRLLLEGRRDAALRLLEELKESFGGDRLVVELT 178 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 RH +R + +V LA LPL A N+ F E YEAHD L+ +A +++ DR Sbjct: 179 RHGLEIERALDPALVALADAAGLPLAAANDIYFSKPEMYEAHDALLCIAEGRTLAEPDRR 238 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RVTP+H+ K+ M ++F+DLPEA +NT+ IARRC+ + + P LP + + Sbjct: 239 RVTPEHFFKSAEAMRTLFADLPEACDNTLAIARRCAIMAENRKPELPICPKVQP---GMT 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E +R+ A GLE RL A + YR RL+FEL++I +M FSGYFLIVADFIQW Sbjct: 296 EAETVRDMAKRGLEARLDAQATPEAERP-TYRTRLEFELDIIEKMGFSGYFLIVADFIQW 354 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+ IPVGPGRGSGAGSV A+AL ITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDR Sbjct: 355 AKQQGIPVGPGRGSGAGSVAAWALLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDR 414 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI+YV+ +YG +RVAQIITFG LQAKA +RDVGR + MPY QV+++ +LIP +PA P Sbjct: 415 RDEVIQYVRREYGEDRVAQIITFGRLQAKAVVRDVGRVMGMPYGQVNKIAELIPFNPAKP 474 Query: 487 VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 V+ QA+ + R +E R AD VDRL+E + LEGLYR+ASTHAAG+VIG +PL V + Sbjct: 475 VTLQQALDGEPRLQEMRQADEMVDRLMETALVLEGLYRNASTHAAGVVIGRKPLIDTVAL 534 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605 YRD RSD+ VTQ++MK++E A L+KFDFLGLKTLT+LQ++++ LA +G+ +DL+ +P DD Sbjct: 535 YRDPRSDMLVTQYSMKYVENASLVKFDFLGLKTLTVLQRAVEILAGQGITIDLAALPLDD 594 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY +L + G+FQ E GMR+ L M+PD ED+IA VSLYRPGP+ NI Y RK Sbjct: 595 AKTYEMLARGDSAGVFQFEGQGMRECLRMMRPDRFEDLIAAVSLYRPGPMANIPAYCARK 654 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E +HP + +++ET G+++YQEQVMQI+Q ++GYSL AD+LRRAMGKKI+ EM Sbjct: 655 HG-EAWEPVHPAMRHLVEETYGILVYQEQVMQISQDVAGYSLGGADLLRRAMGKKIRSEM 713 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + Q++ F+ GA KNG+ + A IF+L+ KFA+YGFNKSHAAAYA+++Y TA++K ++PV Sbjct: 714 EAQRKIFVDGAVKNGVPEGKAGEIFDLMEKFAEYGFNKSHAAAYALVAYHTAYLKANHPV 773 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLA 840 FLAASMTL++D EK+ Q+A + I ++PP VN +FKV I ++LA Sbjct: 774 AFLAASMTLDLDKTEKLANHMQEASRLGIPVLPPDVNRSAAEFKVETMEDGRQAIRFALA 833 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG + ++ A A PF S+ +F RVD K LN+ LE+L AGA D +R Sbjct: 834 AVKRVGMQAMQDLVRARDAKGPFRSIAEFAGRVDPKLLNKMQLENLARAGAFDSLEKNRA 893 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++ + + + + AQ + R + +F + + + L R E + Sbjct: 894 RMTMAAEVVLRRAQSSAEERNSSQIGLFGG-GDSRPEPLRLPNVPDWPELERLTQEAEAV 952 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGW 1017 GF+ S HPLD YK +LRK+ + + A G + ++A VV+ +++ TR GSR+ W Sbjct: 953 GFHLSAHPLDTYKEVLRKLRVTSIAQLQAKAEAGAAVLKIAGTVVNSKERTTRTGSRMAW 1012 Query: 1018 VTFSEPAKEYEANFF 1032 + S+ + E F Sbjct: 1013 LKLSDSSGSTEVTLF 1027 >gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755] gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755] Length = 1158 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 410/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS +S++ G + ++ A+ A+A+TD N + F +A +G Sbjct: 2 SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G + + + + + + LL GY + L+S+ Y Sbjct: 62 VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYV- 110 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + +WL E +G+I+L+GG +G + +A + Q AE+ L +++ F + Y++L Sbjct: 111 EFPVVEKAWLAE-HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + + Q V + +PLVA N+ +FL ++D+EAH++ +A+ S + R Sbjct: 170 CRTGRSDEEHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKR 229 Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + + Y ++ EM +F+DLP+A+ENT+ IA+RC+ +++ + + Sbjct: 230 PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGE-----YFLPNFPTGE 284 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L KA GLE RLA + Y +RL EL+VI +M F GYFLIV Sbjct: 285 LSTEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 345 EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC D RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP Sbjct: 405 FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E D V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 465 DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596 P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR V Sbjct: 524 FSPLYFDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPLV 583 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 + IP DD + + LL T +FQLES GM+ + +QP EDIIALV+L+RPGP++ Sbjct: 584 RIESIPLDDEKAFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643 Query: 657 NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V N +RK+GKE I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 644 SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM Q+ F GA K GI +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 704 ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+KTHYP EF+AA MT EMDN +KI F + + ++PP +N+ F Sbjct: 764 ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L AIKGVG ++EA D F L D +RVD +K+NRR E L+ Sbjct: 824 VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946 AGA D G R L+++L++ + + K ++F T + + Sbjct: 884 AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 +NE+ LG Y SGHP+ + L E T RG +A +++ + Sbjct: 944 TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+KGSRIG T + + + + F Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029 >gi|283783561|ref|YP_003374315.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05] gi|283441761|gb|ADB14227.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05] Length = 1188 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 349/1074 (32%), Positives = 547/1074 (50%), Gaps = 56/1074 (5%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + + FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A Sbjct: 1 MTQPETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 AGI+PIIG + + + + + + L G L Sbjct: 61 KAGIKPIIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ S L + + R+ L ++G+I +G SG I + A + Sbjct: 121 LKASSVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAG 179 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG D ++ L H + ++++A PL+ATN+ ++ EED EA D Sbjct: 180 EFQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDA 239 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 ++ + + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 240 MLCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGE 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + +E + K GLE R + ++ D+E VI Sbjct: 300 DGAFMPQFDCPEG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVIC 351 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLN Sbjct: 352 QMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLN 411 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + + Sbjct: 412 PERVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEF 471 Query: 470 SQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 S +++ K L P +SL I D+ FRE DP R+ E ++ +EG Sbjct: 472 SVGEKITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA ++G P++ P+ + T F E GL+K DFLGL LT Sbjct: 532 LIRQTGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLT 590 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +++ +L + +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD Sbjct: 591 VIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDN 650 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693 DI AL++LYRPGP+D Y RKNG + I+ IHP + +L ET G+I+YQE Sbjct: 651 FNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQE 710 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV A++L+GYSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++L Sbjct: 711 QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVL 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ Sbjct: 771 VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871 IQ++ P VN +++ + + + L AI+ VG I+ F + DF R Sbjct: 831 IQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 V LNRR++ESL+ AGA D +R L Q D +++ + ++FA Sbjct: 891 VPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLD 950 Query: 929 ------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + G +IT+ + + E+ +LG Y S HPL +L + Sbjct: 951 SSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMS 1010 Query: 983 YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1011 IAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064 >gi|153006392|ref|YP_001380717.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5] gi|152029965|gb|ABS27733.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5] Length = 1217 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 403/1090 (36%), Positives = 618/1090 (56%), Gaps = 77/1090 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL +H+ YSLL+GA+ + ++L + A +A+TD NLF A++F +KA AG++ Sbjct: 2 PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+G + + + ++LL AEG+ L L S+ + + Sbjct: 62 PIMGMEAYVAGDKG-----RHDRSERVGRHLILLAKNAEGWANLRFLSSKAFT-EGFYYD 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 RI L++ ++GL+ LT +G + R A + ++ +F ++ +Q Sbjct: 116 PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 + ++ +++ QL +PLVAT ++ ++S +D +AH+VLM +A + R Sbjct: 175 SNGMREQLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRL 234 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R T ++++ +MV+ + EA++NT+ IA C+ LQ+ LPRF + Sbjct: 235 RHETDGLFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDGV---- 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EE + A GL+ R + + YRQRL+ EL VI +M FSGYFLIV DFI Sbjct: 291 SEEEWIEKLAKDGLDARFREIDGKYPHDRDAYRQRLEMELGVIKKMGFSGYFLIVQDFIN 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W K++ IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+ Sbjct: 351 WGKQHQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ D++ KL+P+ Sbjct: 411 RRDEVIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQG 470 Query: 486 PVSL--------QAIADDSRFREARLADPSVDRLL---------------EISQKLEGLY 522 + + R E + + + +I+ LEGL Sbjct: 471 KTPPLKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+VI D+PL VP Y+D +S++ V+QF + +E AGL+KFDFLGLKTLT++ Sbjct: 531 RQAGLHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590 Query: 583 QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + Q ++ IP DD + Y L++ T G+FQ+ESSG + + M+P Sbjct: 591 DDALRMVKQNHPEMKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSR 650 Query: 640 IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 ED+IA +LYRPGP+D + VY +RK+G+EK+V HP ++P+L+ T GVI+Y Sbjct: 651 FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVYDHPKLEPVLEPTYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q+L+GYSL +AD+LRRAMGKK E M K++ F++GA K+G+ + +A IF+ Sbjct: 711 QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGGIFD 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E N +K+ +AR Sbjct: 771 LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830 Query: 812 FNIQIMPPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTARHIM 854 I+++PP VN DF RI + L A++GVG + + I+ Sbjct: 831 DGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQAIL 890 Query: 855 EASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 EA A+ PF +L D SRVDSKK+N++V+E+LV +GALD G R QL +D+ Sbjct: 891 EARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFAAGA 950 Query: 914 WVEKNRTNKHENIFAHEKGTF-SDKITLEK---------FSVENSSVRFENEQRVLGFYF 963 + +R + ++F K + VR E+ LGFY Sbjct: 951 SAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEALGFYL 1010 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022 +GHPL Y+ +R+ G+ + + +V + +++ + KG+R G++T + Sbjct: 1011 TGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGFLTLED 1070 Query: 1023 PAKEYEANFF 1032 E + Sbjct: 1071 LTGTVEVVCW 1080 >gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae ATCC 25976] gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae ATCC 25976] Length = 1158 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 407/1048 (38%), Positives = 606/1048 (57%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS +S++ G + ++ A+ A+A+TD +N ++F +A Sbjct: 1 MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + + + LL GY + L+S+ Y Sbjct: 60 SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG +G + +A + A++ + +++ F + Y+ Sbjct: 110 V-EFPVVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPNHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R D R Q V + H+LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 SLCRTGRMDEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP + +P + ++ EM ++F+DLP+A+ENT++IA RC+ +++ + Sbjct: 228 KRPKKYSPQQHFRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RL + Y +RL EL+VI +M F GYFLI Sbjct: 283 GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V + IP DD +++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V + N + H + P+L T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 642 LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q+E F GA K G+ +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI F + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I Y L AIKGVG I+EA D F L +RVD KK+NRR ESL Sbjct: 822 FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A +++ Sbjct: 942 KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + + + + F Sbjct: 1002 RIAITKRGSRLGIATIEDRSGKLDMTLF 1029 >gi|328947381|ref|YP_004364718.1| DNA polymerase III subunit alpha [Treponema succinifaciens DSM 2489] gi|328447705|gb|AEB13421.1| DNA polymerase III, alpha subunit [Treponema succinifaciens DSM 2489] Length = 1213 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 353/1081 (32%), Positives = 557/1081 (51%), Gaps = 67/1081 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YS+L+GA ++ ++ + PA+A+TD N+F +L F + GI PI Sbjct: 19 FVHLHVHSDYSILDGASKIDTLVARAKELNMPALALTDHGNMFGSLNFEKLCHVNGINPI 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +G + + + + + ++LL GY+ + L S Y Sbjct: 79 VGEEFYVAWGSHTEHNDVPFGRNGKNSHYFHLILLCENQTGYKNMSWLSSIAYTEGLYYG 138 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 RI L++ EGLI L+ G + + + A + +K+LFG DR Y+ + Sbjct: 139 KPRIDFELLKKYH-EGLICLSACIQGELPQLLLNGREEDAYRVAKEYKELFGPDRYYIEI 197 Query: 187 QRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ + +++L+ ++PLV TN+ + +++D EA D L + ++ + + Sbjct: 198 QDHGLDEQKEVAVNLIKLSKDLDIPLVLTNDVHYCNKDDAEAQDALRCIGFKKLLDEPHQ 257 Query: 246 PRVT--PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300 + YLK EM +F + PEA+ NT++IA C+ + + + Sbjct: 258 TMGGGRKEWYLKTEQEMSILFPNYPEAMANTIKIANMCNLTIHQYTTPELKGCLPRFSLP 317 Query: 301 ------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 +D + +++ +R GL VR + Q R+R ++EL +I +M FS Sbjct: 318 IEFQKHEDYTENQDDYVRCLVEKGLRVRYPE-------ITQAIRRRCEYELGIIFKMGFS 370 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV +FI WAK++ IP+GPGRGSGAGS+ AY +TITDIDP RF L+FERFLNP+R+S Sbjct: 371 GYFLIVWEFINWAKEHGIPIGPGRGSGAGSLVAYCMTITDIDPFRFKLIFERFLNPERVS 430 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDID D R +I++ + YG +V I+TFG+L+ K L DVGR L +P S V + Sbjct: 431 MPDFDIDMDFDFRQNIIQHTRETYGEPQVGHIVTFGTLKPKNCLADVGRILNIPLSIVTK 490 Query: 475 LCKLIPNDPAHPVSL---------------QAIADDSRFREARLADPSVDRLLEISQKLE 519 + IP++P + I+++ + +KLE Sbjct: 491 VKACIPDNPKAKLKNALEPPTDKFPDGGQLIPISENPETTIGLDKKTFDRWIALC-KKLE 549 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+ HA+G+VIG L P+++D ++ Q+ M IE GL+KFD+LGLKTL Sbjct: 550 GLIRNTGLHASGMVIGLTALPDWAPVFKDPKTGEVAVQYTMDIIEPCGLVKFDYLGLKTL 609 Query: 580 TLLQKSLDFLAQRGVKVDLSLIPFD----DHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +L++ + + + + + + D ET+ L ++ IFQ ES GM++ L Sbjct: 610 SLIRYAENIINKHKKPDEPEFKTENVSETDSETFDLFCRGDSVAIFQFESPGMQKILRQC 669 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 QP C+E+++AL +LYRPGP+D I Y K E + P ++ +LKET GV++YQEQV Sbjct: 670 QPRCVEELVALNALYRPGPLDYIPQYIEGKWKPETVHYPDPCLEGILKETYGVMVYQEQV 729 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQ+AQ ++G+SL AD+LRRAMGKK E + +K F GA K G +K A IF+++ Sbjct: 730 MQVAQKIAGFSLGGADMLRRAMGKKKLEVLMGKKVEFEEGAIKQGYTKEHADEIFDIMVP 789 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSHAAAY V++Y+T W+KTH EF+AA++T E+ + + + ++ ++AR+ I Sbjct: 790 FAGYGFNKSHAAAYTVLAYRTGWLKTHKKAEFMAANLTNEITSTDTLPEYIEEARKMGIP 849 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 + PP VN F V D I + L IKG+G AR I+E + P+ S DF R+ S Sbjct: 850 VDPPDVNRSDSIFDVIDGHIVFGLKGIKGMGEGAARAIVEEREKNGPYKSFVDFIERLSS 909 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K +N++ +E L+ GA D G +R L + + + +Y ++ ++F Sbjct: 910 KDVNKKAIEVLIKTGAFDNLGQNRATLTMNFERVIEYEDKKNASKEYGQASLFEDAGIKE 969 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991 + E+ R E+ ++G + SGHPLD YK + E + Sbjct: 970 FEDFKFEECEDLPKMERLNMEKELIGCFVSGHPLDDYKTAIETCATCNSENIERWAKIDK 1029 Query: 992 -------------------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G M+ + T+KG ++ + ++ + FF Sbjct: 1030 AEKASLESSGRSSWQSRNSGKTYIAIGMLQDLKIIMTKKGKQMAFAKLADYKGFIDVTFF 1089 Query: 1033 P 1033 P Sbjct: 1090 P 1090 >gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624] Length = 1178 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 423/1052 (40%), Positives = 607/1052 (57%), Gaps = 46/1052 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +PSF HL++H+ +S+++GA +++++ A D QPA+AITD NNLF A++F + A G Sbjct: 2 STPSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P+IG + ++ T ++LLV +GY L EL++R + + K Sbjct: 62 VKPVIGADIVLE---------GLGTDPLATSRLLLLVQNKQGYLNLSELLARAWTGNVHK 112 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L+WL+E+ EGLI+L+G +G + +A + A L F LF R Y+ L Sbjct: 113 AQAIVKLAWLKELH-EGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLEL 171 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR R D + VQLA +LP+VAT+ FL+EEDYEAH+ + +A ++ R Sbjct: 172 QRAGRADDEVHVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRR 231 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y K+ ++M ++F+DLP AL NT+EI +RC+ L + P LP F + Sbjct: 232 VRKFTKEQYFKSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSM- 290 Query: 305 KEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ R ++ GLE L + Y +RL+FE+N I +M F GYFLIV Sbjct: 291 ---EDYFRKVSLEGLEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVG 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQWAK N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID Sbjct: 348 DFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ RD VI YV+ +YG E V+QI TFG++ A+AA+RDVGR + M Y+ D + KLIPN Sbjct: 408 FCQANRDRVIEYVKERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPN 467 Query: 482 DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P +++ I + E + + V LLE++QKLEG+ R+ HA G++I L+ Sbjct: 468 KPGQHITIDGAIKEVPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLT 527 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597 P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ +R Sbjct: 528 DFCPLYQQPGSDAAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFS 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 IP DD TY L T +FQ ES GM+ L +P +ED+IAL +LYRPGP+D Sbjct: 588 FEAIPLDDKATYQLFQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDL 647 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK+G+E+I HPL+ ML ET G+++YQEQVMQ AQ+L GYSL AD+LRRAM Sbjct: 648 IPSFVARKHGREEIEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM 707 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM + +E F GA++NGI++ A IF+L+ KFA YGFNKSHAAAY++++Y TA Sbjct: 708 GKKKAEEMAQHREIFRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTA 767 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836 W+K HY EF A+MT+EMD+ +K+K +DA++ + PP VN F+ V D I Sbjct: 768 WLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGMHFEPPDVNRGHYRFEPVSDTVIR 827 Query: 837 YSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKLNRRVLESLV 886 Y L A+KG G I+ A PF SL DFC RVD ++N+R +E+L+ Sbjct: 828 YGLGAVKGTGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALI 887 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKIT 939 AGA D +R +LL S D + + +F G+ + + Sbjct: 888 KAGAFDSLHLNRAELLASTD--RAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPE 945 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999 L + R +E+ +GFYFSGH D +R+ + E + T LA Sbjct: 946 LVEALPWGVKERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDTREPQ--LLAG 1003 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +V + ++G R+ + + +A Sbjct: 1004 IVSDLRVINGQRG-RLALFKLDDKSAVLDARV 1034 >gi|117926508|ref|YP_867125.1| DNA polymerase III subunit alpha [Magnetococcus sp. MC-1] gi|117610264|gb|ABK45719.1| DNA polymerase III, alpha subunit [Magnetococcus sp. MC-1] Length = 1195 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 439/1074 (40%), Positives = 631/1074 (58%), Gaps = 57/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL +H+ YSLL + L +++ + Q PA+A+TD NLF A++F Sbjct: 1 MP--ASFVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G QL + K K ++LL EG++ L+ L+++ +L D Sbjct: 59 AGIKPLLGAQLYLVPDHTNKEERVDKEVRDQ---VILLCRNEEGWKNLMRLIAKGHL-DG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---- 180 RI L L++ + GL+ L+ G+ G + R AE +FGD Sbjct: 115 SHGLPRIDLPLLKQ-HSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQM 173 Query: 181 -RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 ++ LQRH + Q V LA LP+VA+ + ++ ED A D L V Sbjct: 174 PNFHLELQRHGEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVR 233 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +++RPR++ + +EM F+DLPEALENT IA RC+ L++ P+LP F Sbjct: 234 TLYEENRPRLSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALP 293 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMK 352 + E E+R ++ AGLE RL++ A Q Y RL +EL +I +M Sbjct: 294 PG----QTLEGEMRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMG 349 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV+DFI+W K ++IPVGPGRGSGAGS+ A++L+ITD+DP+R++LLFERFLNP+R Sbjct: 350 FPGYFLIVSDFIKWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPER 409 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DFC DRR+EVI YVQ KYG +RVAQIITFG++QAKA +RDVGR L+ PY +V Sbjct: 410 VSMPDFDVDFCMDRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRV 469 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D++ KL+PN + +A+ + R R+ + V L+ ++ LEG R THAAG+ Sbjct: 470 DKIAKLVPNVLGITLK-EALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGV 528 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI + PL+ VP+YRD RS +PVTQFNM +EKAGL+KFDFLGLKTLT++ +L + R Sbjct: 529 VISNGPLTDTVPLYRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNAR 588 Query: 593 GVK----------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + +D++ I +D + LL T G+FQLESSGMR+ L+ + PD ED Sbjct: 589 RAQEGERAEDRVPIDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFED 648 Query: 643 IIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 IIALV+LYRPGP+ + + + RK+G+ + P ++P+L+ET GVI+YQEQVM+IAQ Sbjct: 649 IIALVALYRPGPLGSGMVDDFIARKHGRAVVEYPLPQLEPILRETYGVILYQEQVMKIAQ 708 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GYSL AD+LRRAMGKK EEM KQ+ F+ GA I A IF+L+ KFA YG Sbjct: 709 VLAGYSLGAADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYG 768 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+AAYA+ISYQTAW+K HYPV F+AA+++ +++N +K+ F ++ ++Q++PP Sbjct: 769 FNKSHSAAYALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPD 828 Query: 821 VNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874 VN V F V ++ + + LAAIK VG +++A + PF SL D C R + Sbjct: 829 VNRSAVIFSVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEG 888 Query: 875 KKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 LNRR LE+L+ AGA D G +R LL +L +K++ N+F E+ Sbjct: 889 GNLNRRTLENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAE 948 Query: 934 FSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 S+ L + R E E+ LGFY S HPL Y+ + G+ E Sbjct: 949 NSESTANWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDYGLMSLSELREKY 1008 Query: 991 ----------RGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G ++R +VV ++ +T+KG R+ +VT + + E FP Sbjct: 1009 GPTSQEPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFP 1062 >gi|325478762|gb|EGC81873.1| putative DNA polymerase III subunit alpha [Anaerococcus prevotii ACS-065-V-Col13] Length = 1150 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 367/1052 (34%), Positives = 584/1052 (55%), Gaps = 48/1052 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G +N +LDK +IAITD ++ A+EF ++A A GI+PI Sbjct: 5 FTHLHVHTEYSLLDGFSRINVLLDKCKELGMNSIAITDHGEMYGAIEFYKQAVARGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + D+ + ++LL +GY+ LI++VS Y ++ R Sbjct: 65 IGCEVYVSENDHTIKEPNNR----RYYHLILLAKNNDGYKNLIKIVSEAY-VNGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + ++++ L+ L+ +G + + + A++ + ++ FG ++ LQ H Sbjct: 120 VSFDYIKK-HANNLVALSACLNGEVSQRLIEGDYEAAKETAIKYESTFGKGNYFLELQNH 178 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 ++ + ++ +PLVATN+ ++++ED DVL + +V +DR ++ Sbjct: 179 GIKEQNTVNRGLDKIHRDLNIPLVATNDIHYVNKEDAYYQDVLQCIQTGKLVKDEDRMKM 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM +FS A+ENT I+ C+ H P LP F + + + Sbjct: 239 PSNEFYLKSYDEMNELFSSYEGAIENTQVISDMCNVSFTFHEPHLPYFSK---VEEGLTK 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL G +D R+R + E+N+I M + YFLIV DF+++A Sbjct: 296 LQYLKKLVDQGL-------VQKYGVITEDIRKRSEMEINIIHNMGYVDYFLIVWDFVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + ++I VGPGRGS AGS+ +YAL IT IDP+++ LLFERFLNP+R+SMPD DIDF R Sbjct: 349 RDHDIAVGPGRGSAAGSIVSYALDITQIDPIKYDLLFERFLNPERVSMPDIDIDFDYVLR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP + Sbjct: 409 DKVVDYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPTTIGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A +F+E +D RL++ ++K+EGL RH S HAAG+VI PL+ ++P+ Sbjct: 469 D-KAFDASPKFKEMYDSDVESKRLIDTARKVEGLPRHTSIHAAGVVISKDPLTDIIPLAL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606 +DL VTQF+M IE+ GL+K DFLGL+ LT+++ ++ D RG++VDLS I +D Sbjct: 528 S--NDLVVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVRKNRGIEVDLSKIDVNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T+GIFQ ES GMR L+ ++P +D+IA SL+RPGP+D I Y + KN Sbjct: 586 NVIDQFNKARTIGIFQFESPGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPNYIHNKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK M+ Sbjct: 646 NPKDVKFIDPALRPILDVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKKKMSVME 705 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 ++ FI G +NG+++ A I++ + FA Y FNKSH+AAY++++ Sbjct: 706 ANRDIFIHGKVDSDGNIEIPGCIRNGVNEKAANQIYDEMISFAKYAFNKSHSAAYSLVAV 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YP E++A ++ MD+ K+ + +++ I+++PP VN +F V + + Sbjct: 766 QTAYLKHYYPEEYMANLISSVMDSSSKLYLYVNESKSLGIEVLPPDVNKSLAEFTVEEGK 825 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890 I + L+ IK VG T + I+ + D F +DF R+ DS+ LN++ +ESL+ AGA Sbjct: 826 IIFGLSGIKNVGVNTIKSIVASRKKDGSFIDFDDFLQRIYEFDSRSLNKKAVESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENS 948 D G++R L+ + K ++F E K + N Sbjct: 886 FDSLGHNRASLMAHYEKAMDAVHENRKVNVKGQIDMFGGFTENKEKKTKTKYDNIKEYNK 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--KGYEESVA-----TIRGNNIRLAAMV 1001 + + E+ VLGFY S HPL YK +L K Y +++ + + +A ++ Sbjct: 946 KTKLKLEKEVLGFYISDHPLSEYKDVLDKEVNFSTDYRDNMNDFQIQKLDRKFVTMAGVI 1005 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K + T+KG + + + + E FP Sbjct: 1006 TEKSEIMTKKGQLMSFASLEDMYGTIEIVIFP 1037 >gi|313156974|gb|EFR56406.1| putative DNA polymerase III subunit alpha [Alistipes sp. HGB5] Length = 1218 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 351/1098 (31%), Positives = 560/1098 (51%), Gaps = 81/1098 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL VH+ YS+L+GA ++ ++ + A AIAITD N++ F A AG++ Sbjct: 2 PDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC++ + +++ + K ++LL EGY L ++VS + + Sbjct: 62 PILGCEVYV-VKNRFEKDKDEKAGD----HLILLAKNLEGYHNLCKMVSYSFT-EGFYYK 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI +++ EGLI + G + +A N + AE+ + FK +FG+ Y+ LQ Sbjct: 116 PRIDKQLIEQYH-EGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQL 174 Query: 189 HRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 H D +++LA + + + +N+ F+ ED AHD L+ + Sbjct: 175 HPSGDPQKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTG 234 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + +R R T YLK+ EM ++F D PEAL T+EIA +C HAP++P F Sbjct: 235 RDLDDPNRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPP 294 Query: 298 KECDDIQKEE---------------------------------ENELRNKAVAGLEVRLA 324 E I E + EL ++ + + Sbjct: 295 PEDFPIALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYL 354 Query: 325 QGAIAKGYH-------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 + KG H + +R+ +EL+ I M F GYFLIV D+I+ A++ + VGPG Sbjct: 355 KDLTYKGAHMRYGDVLDEKTEERIKYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPG 414 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D R +V+RY K Sbjct: 415 RGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVLRYCVQK 474 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------PAHPVSLQA 491 YG +RVAQI+TFG++ K A++DV R ++ S+ DRL KL+P+ Sbjct: 475 YGQKRVAQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGETPFDFV 534 Query: 492 IADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + R + + L+ ++KLEG R HA G++IG L + PM Sbjct: 535 YKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAPMAIAKD 594 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609 ++L V +F K +E GLIK DFLGL+TL++++ +++ + GV VD+ I DD TY Sbjct: 595 AELNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISLDDAPTY 654 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 + T G+FQ ES GM++ L ++P+ ED+IA+ +LYRPGP++ I + RK+G+E Sbjct: 655 EVFARGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGQE 714 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + ++ L +T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK ++ +DK K Sbjct: 715 PVTYEIADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRDVLDKMK 774 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI G + G + I I+ FA Y FNKSH+ YA ++YQT ++K HYP EF+A Sbjct: 775 PKFIEGCKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHYPSEFMA 834 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTT 848 A ++ + +++++ + + ++ I+++ P +N F + + L A+KGVG Sbjct: 835 ALLSRNLADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVRFGLGAVKGVGEA 894 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-- 904 I+ A+ F + D RV+ +NR+ E+L +AG D G+ R + + Sbjct: 895 AVESIIAERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGKFFGADA 954 Query: 905 --------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 ++ + +Y Q + + N +++F + L + + E+ Sbjct: 955 RDNTGVTFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLETLAKER 1014 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSR 1014 ++G Y S HPLD YK I+ M E +G I +A MVVS Q T+ G Sbjct: 1015 EMIGHYLSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLITKTGKP 1074 Query: 1015 IGWVTFSEPAKEYEANFF 1032 G + +E F Sbjct: 1075 WGKFVLEDYNGTHEFALF 1092 >gi|149919879|ref|ZP_01908355.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1] gi|149819326|gb|EDM78759.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1] Length = 1255 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 399/1126 (35%), Positives = 595/1126 (52%), Gaps = 107/1126 (9%) Query: 1 LTQYLEKSP----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56 ++ + F HL +H+ YSLL+GA+ +N++ K+ ++A+TD N+F A+ Sbjct: 1 MSTDMTGDAAGVDDFAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAV 60 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +F Q+A A G++PI GC+ I D T++ IVLL GYQ L LV Sbjct: 61 QFYQQAKAHGVKPIFGCEAYIADGDAPAKTDR------KNYHIVLLAKNEVGYQNLQRLV 114 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S +L + + RI L+E +EGL+ L+ G I R A +R+ + Sbjct: 115 SYGHL-EGFYYNPRIDRKTLRE-HSEGLVGLSACLGGHISRMITGGDMDGARERIREYAD 172 Query: 177 LF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +F ++ LQ + + + QL ++P+VATN+ ++++ + AH+VLM + Sbjct: 173 IFEPGSYFLELQPNGMELQEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCM 232 Query: 235 AHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 ++ + R + + ++K +M F PEA+ N IAR C+ L + P LP Sbjct: 233 GMGRTINDEKRLKHDCEEFFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELP 292 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQRLDFELNVIARMK 352 F E D E LR A GL+ R+ + A+ K Y +RL+ EL +I MK Sbjct: 293 DFKLPEGTD----EVEYLRKVAREGLDQRIRELRALGKAPDTDVYFERLERELGIIINMK 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV DFI+ AKK +PVGPGRGSGAGS+ AY++ ITDIDP+++ LLFERFLNP+R Sbjct: 349 FPGYFLIVWDFIKEAKKMGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPER 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFC DRR+EVI+YV + YG +RV QI TF SL+A+ LRDV R ++ ++ Sbjct: 409 VSMPDFDIDFCMDRREEVIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEA 468 Query: 473 DRLCKLIPNDPAHPVSLQA---------IADDSR-----------------FREARLADP 506 + L K++P P +SL + + R ADP Sbjct: 469 NELAKMVPEGPKVSLSLCMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADP 528 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 V ++++I LEGL RHA HAAGIVIG+R L++ VP ++ D VTQ+ M +E+A Sbjct: 529 GVKQIVDIGCSLEGLNRHAGMHAAGIVIGNRELTEHVPCFKA--DDKIVTQYTMNDVEQA 586 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--------------IPFDDHETYHLL 612 GL+KFDFLGLKTLT+++ ++D + L IP DD E Y ++ Sbjct: 587 GLVKFDFLGLKTLTVIKHAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMI 646 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEK 670 + T G+FQLES+G ++ L+ ++PD EDIIA V+LYRPGP++ +V K+G+ K Sbjct: 647 SRGETTGVFQLESTGFKKLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRK 706 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 I H L+ +L+ET GV +YQEQVM AQ+L+G+SL AD++RRAMGKK +EM++Q+ Sbjct: 707 IEYPHELLADVLRETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRA 766 Query: 731 RFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 F+ G N I A IF+L+ KFA YGFNKSH+AAY +I+YQTA++K HYP F+ Sbjct: 767 LFVEGCESVNNIDAKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMC 826 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------------- 830 MT + D E + KF +AR +I ++PP VN DF V Sbjct: 827 GLMTCDKDKSENVVKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQL 886 Query: 831 ------------------GDN--RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 I + + A++ VG I+ A + PF ++ + C Sbjct: 887 ARKSKKVRRRQAREDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELC 946 Query: 870 SRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 RVD K++N+R LE LV +GA D G R ++ ++++ + Q +++R + +F Sbjct: 947 RRVDLKRVNKRTLEGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLF 1006 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 K R NE+ LGFY +GHPLD Y+ + + E Sbjct: 1007 DAFSSDQVYVEEYPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHASVRIGELR 1066 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + L ++ +Q T+ G +G+ + E FP Sbjct: 1067 KELAGQEVVLGGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFP 1112 >gi|310779267|ref|YP_003967600.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter polytropus DSM 2926] gi|309748590|gb|ADO83252.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter polytropus DSM 2926] Length = 1138 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 386/1038 (37%), Positives = 607/1038 (58%), Gaps = 34/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ + FVHL +H+ YSLL+G ++ LD+ ++AITD N+F A+EF +KA + Sbjct: 1 MKNN--FVHLHLHTEYSLLDGVGKIDEYLDRAKKLGMRSMAITDHGNMFGAVEFYKKALS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G + + + + + +VLL GY+ L++L S YL Sbjct: 59 KGIKPIVGMEAYLSEFSMEEKSGRN-------FHLVLLAKNETGYKNLMKLSSEAYLK-G 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG-DRL 182 RI L + ++G+I L+ G + + S + +K + + ++FG + Sbjct: 111 FYYRPRIDKEILAQ-HSKGIIALSACMQGELSKRILDEESEEDLDKAVNEYVEIFGKEDF 169 Query: 183 YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 YV LQ + + LA H+L +VATN++ ++ D+ D+L+ V + +S Sbjct: 170 YVELQSNGIKKQEKLNDALYTLAKKHDLKVVATNDTHYVYYGDHTLQDILICVQTGSKIS 229 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R ++ T +LK+R +M+ A++NTVEIA +C+ L+ P + C Sbjct: 230 DEKRMKIETDQLFLKSREQMLEELGKYDRAVDNTVEIADKCNLELEFGVFKFPEYKIPTC 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL+ R +D +R+++EL+VI +M ++GYF++V Sbjct: 290 VDSIR---EFLRKLVYQGLKRRYKNDL------EKDVIERVEYELDVINKMDYAGYFVVV 340 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +AKKN IPVGPGRGS AGS+ AY+L IT++DP++++L+FERFLNP+R+SMPD DI Sbjct: 341 WDFIDYAKKNRIPVGPGRGSAAGSMVAYSLGITELDPMKYNLIFERFLNPERISMPDIDI 400 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D CQ+RR EVI YV KYG +RVAQIITFG+++A+AA+RDVGR + +P +VD++ KLIP Sbjct: 401 DICQERRQEVIDYVGEKYGKDRVAQIITFGTMKARAAIRDVGRVMNVPLFKVDKIAKLIP 460 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + +A+ + RE D L+E S++LE RHAS HAAG+VI PL+ Sbjct: 461 PFFS---LDRALKEVEELREVYETDSESQELIEYSKRLENTVRHASIHAAGVVITKDPLT 517 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 VP+Y D ++ + TQ+ MK +E+ GL+K DFLGL+ LT+LQ+++D++ + ++DL+ Sbjct: 518 DDVPLYSDTKTKVVSTQYQMKELEELGLLKMDFLGLRNLTILQRTVDYIREDTNEEIDLN 577 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP D E Y LL TLG+FQLES G+R+ L ++PD EDIIA+++LYRPGP+ + + Sbjct: 578 KIPLDSLEVYRLLQKGDTLGVFQLESHGIRKLLMKLKPDRFEDIIAVLALYRPGPLGSGM 637 Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 + KNG+ I H ++ +LKET GVI+YQEQVM+IA +++ Y+L EAD+LRRAM Sbjct: 638 VDDFIEVKNGRAAIKYPHQSLEDVLKETYGVILYQEQVMKIANIMADYTLGEADLLRRAM 697 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK M++ + +F+ A K G S+ A IF L+ KFA YGFNKSH+AAYA+++Y TA Sbjct: 698 GKKNMAIMEENRNKFVKRAVKKGYSEEKATEIFNLIDKFAGYGFNKSHSAAYALVAYWTA 757 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 + K YP + AA MT E +N+EK+ + +DA++ I + P++N F V + + + Sbjct: 758 YFKGCYPKHYYAALMTSERNNIEKLAVYVEDAKEHGIGVALPNINKISTRFIVDGDLVRF 817 Query: 838 SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 ++AIK VG T I E + + + + E+F +R + +N++ LE+L+ +GALD Sbjct: 818 GMSAIKNVGETLIERIKAEHARNGDYTTFENFVTRGKKEGVNKKALEALILSGALDSIPG 877 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R Q +S++ YA V K + N+F + T K + E+ Sbjct: 878 NRRQKYESMEKALNYATKVMKEDDIQQMNLFGEARATIE-KFQMPSVEEYKMENLLTGEK 936 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRI 1015 LGFYF+GHPLD Y+ +L+ + ++ V+ + +I+ MV + ++ T+K G + Sbjct: 937 EFLGFYFTGHPLDKYRQMLKVYRLTEIKDIVSDMP-VHIKTYGMVRNLKKVITKKSGQVM 995 Query: 1016 GWVTFSEPAKEYEANFFP 1033 G + A FP Sbjct: 996 GVFDLEDYYGRIGAVVFP 1013 >gi|297243791|ref|ZP_06927721.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD] gi|296888212|gb|EFH26954.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD] Length = 1188 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 349/1074 (32%), Positives = 547/1074 (50%), Gaps = 56/1074 (5%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + + FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A Sbjct: 1 MTQPETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 AGI+PIIG + + + + + + L G L Sbjct: 61 KAGIKPIIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ S L + + R+ L ++G+I +G SG I + A + Sbjct: 121 LKASSVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAG 179 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG D ++ L H + ++++A PL+ATN+ ++ EED EA D Sbjct: 180 EFQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDA 239 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 ++ + + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 240 MLCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGE 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + +E + K GLE R + ++ D+E VI Sbjct: 300 DGAFMPQFDCPEG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVIC 351 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLN Sbjct: 352 QMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLN 411 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + + Sbjct: 412 PERVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEF 471 Query: 470 SQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 S +++ K L P +SL I D+ FRE DP R+ E ++ +EG Sbjct: 472 SVGEKITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA ++G P++ P+ + T F E GL+K DFLGL LT Sbjct: 532 LIRQTGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLT 590 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +++ +L + +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD Sbjct: 591 VIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDN 650 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693 DI AL++LYRPGP+D Y RKNG + I+ IHP + +L ET G+I+YQE Sbjct: 651 FNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQE 710 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV A++L+GYSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++L Sbjct: 711 QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVL 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ Sbjct: 771 VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871 IQ++ P VN +++ + + + L AI+ VG I+ F + DF R Sbjct: 831 IQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 V LNRR++ESL+ AGA D +R L Q D +++ + ++FA Sbjct: 891 VPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLD 950 Query: 929 ------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + G +IT+ + + E+ +LG Y S HPL +L + Sbjct: 951 SSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMS 1010 Query: 983 YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1011 IAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064 >gi|171742474|ref|ZP_02918281.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC 27678] gi|306822385|ref|ZP_07455764.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium dentium ATCC 27679] gi|309802136|ref|ZP_07696245.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium JCVIHMP022] gi|171278088|gb|EDT45749.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC 27678] gi|304554383|gb|EFM42291.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium dentium ATCC 27679] gi|308221216|gb|EFO77519.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium JCVIHMP022] Length = 1195 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 338/1081 (31%), Positives = 546/1081 (50%), Gaps = 63/1081 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN 60 Query: 65 AGIQPIIGCQLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLV 103 AGI+PIIG + + + ++ K + + + + Sbjct: 61 AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + + +FG D Y+ H +R ++ +A PL+ATN+S ++ Sbjct: 180 FDEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED A D ++ + + + + R + +YLK+ EM +F DLPEA +NT+EIA R Sbjct: 240 AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAER 299 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + H + +E + K GLE R G + ++ Sbjct: 300 CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPIEVLKQ 351 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ Sbjct: 352 ADYECGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQH 411 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL+D Sbjct: 412 GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510 R + +S +R+ K +P + L I D + FRE +DP R Sbjct: 472 SARIMGFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKR 531 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + + +EGL R HA ++G P++ P+ + T E GL+K Sbjct: 532 VTDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR Sbjct: 591 MDFLGLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMR 650 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683 L+ ++P DI AL++LYRPGP+D Y RKNG +KI IHP + +L Sbjct: 651 SLLKTLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 711 ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQ 770 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K Sbjct: 771 EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ Sbjct: 831 LYLGEARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV LNRR++ESL+ AGA D +R L + +++ + Sbjct: 891 YVNFPDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAE 950 Query: 922 KHENIFAHEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++F+ + +++ + + E+ +LG Y S HPL + +L Sbjct: 951 GQFDLFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVL 1010 Query: 976 RKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + + G + +A ++ + ++ ++KG+ VT + + F Sbjct: 1011 SSLREMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMF 1070 Query: 1032 F 1032 F Sbjct: 1071 F 1071 >gi|282599926|ref|ZP_05972365.2| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541] gi|282567163|gb|EFB72698.1| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541] Length = 1144 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 406/1032 (39%), Positives = 595/1032 (57%), Gaps = 38/1032 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G ++ K+A PA+AITD NL ++F A +AG++PIIG ++ Sbjct: 1 MIDGLAKTGPLVKKVAEMGMPALAITDFTNLCGLVKFYGAAHSAGVKPIIGADFYME--- 57 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + V + +L EGYQ L L+S Y G I WL + Sbjct: 58 -------SEQLGDDVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 EGLI+L+GG G + + + + ++ + ++ F Y+ L R D Sbjct: 110 EGLILLSGGRKGDVGQFLLRGNQALVDECIEFYETHFPGSYYLELIRTGRPDEESYLHAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++LA LP+VATN F+ D++AH++ +A+ + RP+ +P YL++ E Sbjct: 170 IELATLRGLPVVATNEVCFIESRDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLRSEEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+D+PEALEN+VEIA+RC+ +++ + E E+ L + GL Sbjct: 230 MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPKFPTGDMETEDYLVMCSKKGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP Sbjct: 285 EERLEFLFPDEKERAVKRIEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V Sbjct: 345 GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLE-KAFEVEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++ +L+ + R K +L IP +D +++ + Sbjct: 524 QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLEDKKSFDM 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669 L T +FQLES GM+ ++ +QPD ED+IALV+L+RPGP+ + +V + +RK+G+E Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDVKWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ F GA KNGI +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 704 MAKQRSVFKDGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT +MDN EK+ + + ++++PP +N+ F V D I Y + AIK Sbjct: 764 AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA F + D C+RVD KK+NRRV+E L+ AGA D G R L+ Sbjct: 824 GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 SL++ K A K ++F + + + V E E+ LG Sbjct: 884 SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLEGERETLGL 943 Query: 962 YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 Y +GHP+ Y + + ++ T RG + +V+S + T++G+RIG T Sbjct: 944 YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003 Query: 1021 SEPAKEYEANFF 1032 + + + F Sbjct: 1004 DDRSGRLDIMLF 1015 >gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1] Length = 1143 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 490/1038 (47%), Positives = 653/1038 (62%), Gaps = 27/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FVHL+VHS+YSL EGA+ + I PA+A+TD+ NLF LEFSQ Sbjct: 1 MAHA-NFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQ+ + + + +VLL G + L S +L + Sbjct: 60 KGVQPIIGCQIGLARPEQQQRLPPD--------QLVLLARDEAGLANIQRLSSLGFLQGE 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ L + EG+++LTGG+SGP+ R AE+ L K+ F DR + Sbjct: 112 PGAKPQLPLETILA-HAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVI 170 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH ++ E ++ LA LPLVATN+ F + YEAHD L+ +A V+S+ Sbjct: 171 ELHRHGLRLEKAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSET 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTPDH+ K M ++FSDLPEA +NT+ IAR C + + P+LP + Sbjct: 231 DRRRVTPDHWFKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLPVCPKVH---E 287 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E+ +R AV GLE R+ + A YR+RLD+EL+VIARM F GYFLIVADF Sbjct: 288 GQTEDETVRAMAVEGLERRM-EDVGAGPEDRARYRERLDYELDVIARMGFPGYFLIVADF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK N+IPVGPGRGSGAGSV A+ALTITD+DPLRF+LLFERFLNPDR+SMPDFDIDFC Sbjct: 347 IQWAKANDIPVGPGRGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVI YV+ +YG +RVAQIITFG LQAKAA+RDVGR L MP+ QV+++ +LIPN+P Sbjct: 407 QDRRDEVISYVRGEYGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNP 466 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P + +AI + R ++ R +D +V RLLEI+ ++EGLYRHASTHAAG+VIGDRPL +L Sbjct: 467 AKPPTLQEAIDGEPRLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVEL 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD VTQF+MK +E AGL+KFDFLGL TLT+LQ+++ FLA GV VDL+ +P Sbjct: 527 VPLYRDPKSDFLVTQFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVP 586 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY +L G+FQ ES GMR L M+PD ED+IA V+LYRPGP+ NI Y Sbjct: 587 LDDERTYQMLQRGDAGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYC 646 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L ET G+++YQEQVMQIAQ L+GYSL AD LRRAMGKKI+ Sbjct: 647 QRKHG-EAWEPPHEDIRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIR 705 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+ + F GASK GI + IF+L+ KFADYGFNKSHAAAYA+++YQTA+MK + Sbjct: 706 AEMETHRSIFAEGASKRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKAN 765 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837 YP FLAA M+L ++N +K+ Q+A + I ++PP +N DF+V I Y Sbjct: 766 YPEPFLAACMSLAINNTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRY 825 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAAIK VG + ++ A ++ F L DF +RVD ++LNR +E+L AGA D + Sbjct: 826 ALAAIKRVGLSAMEAVVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPN 885 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + + D I + AQ + + + +FA + + L R E Sbjct: 886 RAAVHGAADMILRRAQAASEEKNSGQIGLFAG--AGTPEPLRLPSCPDWPDMERLSFEAE 943 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG-NNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLDVY L+K+ + G +RLA VV+ +++ TR GSR Sbjct: 944 AIGFHLTAHPLDVYTVTLQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSR 1003 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ YE F Sbjct: 1004 MAWVRLSDAGGSYEITVF 1021 >gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126] gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126] Length = 1433 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 352/1075 (32%), Positives = 556/1075 (51%), Gaps = 68/1075 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +S+L+ + ++++K PAIA+TD N+ A F + A AGI+PI Sbjct: 246 FVHLHCHTQFSILQSTTEIPSMVNKAKEMGMPAIAMTDHGNMMGAYNFVRDANKAGIKPI 305 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ QD K VLL GY L +L S + ++ R Sbjct: 306 VGCE-YFLTQDR-----NNKKNKDDGFQTVLLAKNKAGYHNLAKLSSIAF-VEGFYYVPR 358 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L + E +I TGG G + AE+ L +K+ FGD YV L +H Sbjct: 359 IDREALVQY-KENIIATTGGLWGEVPFLILNAGEAQAEEAFLWWKEQFGDDFYVELNQHG 417 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-- 247 ++ +++ A +++ A NN+ + ++ED EA D+L+ V ++ +P+ Sbjct: 418 VPEEQKVNEVLLKFAKKYDVKYFAANNTYYTNKEDAEAQDILLCVKDGETTGEQGKPKKY 477 Query: 248 ------------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + Y+K+ EM +F+D PEA+ T EIA + +LP++ Sbjct: 478 VGKRGREYRFGLPNDEFYIKSPDEMKKLFADYPEAIACTAEIAEKIEGFELARDVLLPKY 537 Query: 296 IEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + K+ EN LR+ G + R + + ++RLDFEL Sbjct: 538 DIPQEFIDPKDAENGGNRGENAYLRHITYEGAKKRYPE-------ITAEIKERLDFELET 590 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I R + GYFLIV DF A++ + VGPGRGS AGS AY IT+IDP+++ LLFERF Sbjct: 591 IERTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCTAITNIDPIKYDLLFERF 650 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+S+PD DIDF R +VI YV KYG +VAQI T+G++ AK+A+RD R +++ Sbjct: 651 LNPDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQITTYGTMAAKSAIRDTARVMEL 710 Query: 468 PYSQVDRLCKLIPNDPAHPVSL----------------QAIADDSRFREARLADPSVDRL 511 P DR+ KL+P+ + +AI+ A+ + ++ Sbjct: 711 PLMDADRIAKLVPDIKLKALFDLASDKKKLSAKLKNNGEAISKAEELLNLAKANDASAKV 770 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 + ++ LEG R+ HA G++I +++ VP+ SD+ TQF+ +E AGL+K Sbjct: 771 INQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYCTQFDNAVVENAGLLKM 830 Query: 572 DFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLTL++ ++ + +R D P DD +TY L T+GIFQ ES GM++ Sbjct: 831 DFLGLKTLTLIKDAVRIVEERHGVKLDPDEFPIDDPKTYELFQKGETVGIFQYESPGMQK 890 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L ++P D+IA+ +LYRPGP++ I + RKNG E+I P ++ L+ET G+ + Sbjct: 891 YLRDLKPTEFSDLIAMNALYRPGPLEYIPNFVKRKNGLEEISYDLPEMEEYLQETYGITV 950 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM ++Q L+G++ EADVLR+AMGKKI +++ K +FI+ ++ G K + I+ Sbjct: 951 YQEQVMLLSQKLAGFTKGEADVLRKAMGKKIFALLEELKPKFINQGAEKGHPKDVLEKIW 1010 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + FA Y FNKSH+ YA ++YQTA++K HYP E++A+ ++ M + + F ++ + Sbjct: 1011 KDWEAFAAYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMGQITDVTFFMEECK 1070 Query: 811 QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 + I+++ P VN F V DN +I + LAAIKG G+ I++ + + + DF Sbjct: 1071 RAGIEVLGPDVNESNSGFTVNDNGQIRFGLAAIKGAGSAAVESIIQERKSNGQYKDIFDF 1130 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRT 920 R+ K +N++ ESL AG DCF Y R Q L S ++ I KYAQ ++ + Sbjct: 1131 AERIPLKSVNKKTFESLAMAGGFDCFKEYHRKQFLASDNGEGTLIEKIIKYAQKLQHEKD 1190 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + ++F E G + + + + E+ V+G + SGHPLD Y+ + Sbjct: 1191 SAQTSLFGGEGGVAIPPPRVAEMEPYSELEKLNIEKEVVGLFISGHPLDEYRFEMESFCN 1250 Query: 981 KGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E N I++ +V + ++T+ G G +T + + F Sbjct: 1251 TQVSELNDIESLASKNEIKVGGIVTAVAHRQTKTGKPFGTLTLEDYGGSFTFFMF 1305 >gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium HTCC2181] gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium HTCC2181] Length = 1154 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 411/1045 (39%), Positives = 607/1045 (58%), Gaps = 42/1045 (4%) Query: 5 LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + S PSF+HL+ HS YS+ +G + + + K PA+ +TD +NLF A++F + A Sbjct: 1 MSDSTQPSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 +GI+PI+GC + I+ + N + L +GY L EL+S+ +L Sbjct: 61 TQSGIKPILGCDVWIENETNP----------DQPYRMALFCQNQQGYIHLSELLSKAFLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SW+ +GLI L+G G I N A++ L ++ +FGDR Sbjct: 111 NQSRGKAILKKSWVLNAH-DGLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRF 169 Query: 183 YVNLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 Y+ +QR+ + + LA +++PLVAT+ F+ +D+ AH+ +A Sbjct: 170 YLEIQRYGSDARKKKQEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADG 229 Query: 238 TVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V++ + RP+ TP+ Y K EM+ +F D+P A NTV IA+RC+F Q+ LP F Sbjct: 230 YVLADQRRPKDFTPEQYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFP 289 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKF 353 I E+ L +A GL+ RL I Y RL+FE+ VI M + Sbjct: 290 IPNGTKI----EDYLLIEAKKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGY 345 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 +GYFLIVADFI W+K N+IPVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+ Sbjct: 346 AGYFLIVADFINWSKSNHIPVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRV 405 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA LRDVGR L +PY+ VD Sbjct: 406 SMPDFDIDFCQEGRDRVIDYVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVD 465 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KL+P + + AI + + ++ + V L +++ +LEGL R+ S HA G++ Sbjct: 466 TIAKLVPLELGITLK-DAIEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVL 524 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I +S P+Y ++ V+QF+ +E GL+KFDFLGL+TLT++ +L+ Sbjct: 525 IAPTKISAFSPIYCQPGAEGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIR 584 Query: 594 VKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + L IP DD T+ LL T +FQLES GM+ L+ +PDC EDIIALV+ Sbjct: 585 SQKGEDPLQLESIPIDDKPTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVA 644 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G++++ HP + +LKET G+ +YQEQVMQIAQ+++GY+L Sbjct: 645 LYRPGPMDLIPDFCKRKHGQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEMD Q+ F+ GA K+ +++ A ++F+LL KFA YGFNKSHAAA Sbjct: 705 GADLLRRAMGKKKIEEMDAQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+I+YQT ++K HYP F+AASM+ +M+N + + D NI ++PP++N F Sbjct: 765 YAMIAYQTGYLKAHYPSAFIAASMSADMNNTDNVHMLFDDCVLNNITLLPPNINKSEYKF 824 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 D+ I Y L A+KG G + I++ A+ PF SL DF +R+D +K+NR+ ESL+ Sbjct: 825 VPVDHESILYGLGAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 +GA D +R LL S++ A+ + N +F + T ++ L + + Sbjct: 885 RSGAFDEIEPNRATLLASVNLAITKAE--QANAHQGQNALFEEFETT---EVPLVEVGLW 939 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + E+ LGFYFSGHP Y+ ++R+ E T R +A ++ + Sbjct: 940 EERKQLAEEKIALGFYFSGHPFKFYEKMIRQFVPNKLSEL--TPRDATYLIAGIISTIHM 997 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 + T +G I VT + + Sbjct: 998 RMTSRGK-IAIVTLDDGVGRIDVVI 1021 >gi|269795562|ref|YP_003315017.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542] gi|269097747|gb|ACZ22183.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542] Length = 1181 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 376/1070 (35%), Positives = 573/1070 (53%), Gaps = 49/1070 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 ++ +S FVHL VH+ YS+L+GA L ++ ++ Q AIA TD LF A +F + Sbjct: 1 MSSAPPRSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWK 60 Query: 61 KACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 +A AG++PIIG + + + + + + + EG Sbjct: 61 QATDAGVKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGM 120 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L S L Q + R+ L+ + GLI TG SG + A K Sbjct: 121 HNLFRASSLASLEGQMGKWPRMDRDLLERY-SPGLIASTGCPSGEVQTRLRLGHYDEAVK 179 Query: 170 RLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + +FG + YV L H + +++LA P+VATN+ ++ +ED + Sbjct: 180 AAGELQDIFGKEYFYVELMDHGLDIETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGS 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 + L+A+ + ++ DR + D +Y+K+ +EM ++ +LPEA +NT+ IA +C Sbjct: 240 QEALLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFN 299 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 A +P F +D E + + GL+ R G + R+R DFE Sbjct: 300 TAANYMPNFPAPAGED----ETSWFIKEVETGLQYRYPDG------IPTEVRERADFETK 349 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F GYFL+VADFI W+K NNI VGPGRGSGAGS+ AYA+ ITD+DPL L+FER Sbjct: 350 VITQMGFPGYFLVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFER 409 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNPDR+SMPDFD+DF + RR EVIRYV +KYG +RVAQI+T+G+++AK AL+D R L Sbjct: 410 FLNPDRVSMPDFDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLG 469 Query: 467 MPYSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQK 517 +PY+ D+L K +P +SL I D FR+ ADP R++E+++ Sbjct: 470 LPYAMGDKLTKAMPPAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ PL ++P+ R ++ +TQF+ E+ GLIK DFLGL+ Sbjct: 530 IEGLKRQWGVHAAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLR 589 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT+L +L+ + +DL + DD TY LL+ TLG+FQL+ GMR L+ M+ Sbjct: 590 NLTILDDALENIVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMR 649 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690 PD EDI A+ +LYRPGP+ ++ Y RKNG +++V IHP ++ L T G+I+ Sbjct: 650 PDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIV 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ+++G+SL +AD+LRRAMGKK K E+DKQ E F G + G S ++ Sbjct: 710 YQEQVMSIAQIVAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T D+ +K + + R Sbjct: 770 DILLPFSDYAFNKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECR 829 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 + I ++PP VN+ +F I + L A++ VG I+ A + F S DF Sbjct: 830 RMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFL 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V + N+R +ESL+ AGA D + R L + V++ ++FA Sbjct: 890 DKVPAVVCNKRTIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIGVKRKEAEGQFDLFAG 949 Query: 930 EKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 D + + E+ +LG Y S HPL + +L++ + Sbjct: 950 FGDEADDGMSFSVDIPDLPDWEKKQLLAFEREMLGLYVSDHPLSGLEHVLQQAAEVSIAK 1009 Query: 986 SV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G+ + +A ++ S Q+K +++G+ VT + E FF Sbjct: 1010 LLTDEDRPDGSTVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVMFF 1059 >gi|225351454|ref|ZP_03742477.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157798|gb|EEG71081.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1196 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 336/1082 (31%), Positives = 549/1082 (50%), Gaps = 64/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60 Query: 65 AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103 G++PIIG + + + + + + + + + Sbjct: 61 EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + + +FG D Y+ H ++ ++ +A PL+ATN+S ++ Sbjct: 180 FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED + D ++ + + + + R + +YLK+ EM +F D+PEA +NT+EIA R Sbjct: 240 AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + H + +E + K GLE R G+ + ++ Sbjct: 300 CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------DGHPPIEVLKQ 351 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ Sbjct: 352 ADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPIKH 411 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF D R V+ YV +KYG ++VAQ + +G+++ K AL+D Sbjct: 412 GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQALKD 471 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510 R + +S +R+ K +P + L I + S FRE +DP V R Sbjct: 472 SARIMGYEFSMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPDVKR 531 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + + +EGL R HA ++G P+S P+ + T E GL+K Sbjct: 532 VTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR Sbjct: 591 MDFLGLSNLTVIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDGMR 650 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683 L+ ++P+ DI AL++LYRPGP+D Y RKNG +KI IHP + +L Sbjct: 651 SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 711 ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSQ 770 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K Sbjct: 771 EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ + Sbjct: 831 LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERENDHGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV + LNRR++ESL+ AGA D +R L + +++ + Sbjct: 891 YVNFPDFIRRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQAE 950 Query: 922 KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++F+ + D + + + + E+ +LG Y S HPL + I Sbjct: 951 GQFDLFSDLEDAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010 Query: 975 LRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L + G + +A ++ + ++ ++KG+ VT + + Sbjct: 1011 LVSLREMSIAHLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESSIQCM 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668] gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668] Length = 1274 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 99 APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 157 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L Sbjct: 158 RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 207 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SWL+ EGL+ L+G G I A + A + + ++F Sbjct: 208 NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 267 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 268 YIELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 327 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 328 NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 387 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYF Sbjct: 388 MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 443 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 444 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 503 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 504 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 563 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 564 LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 623 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 624 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 683 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPG Sbjct: 684 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 743 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 744 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 803 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 804 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 863 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 864 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 923 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ Sbjct: 924 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 983 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QLL S+ + A+ N +F G + + L Sbjct: 984 RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1040 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + Sbjct: 1041 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1097 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1098 QMTQRGK-MVIALLDDGTGQCEVTVF 1122 >gi|269219520|ref|ZP_06163374.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269211099|gb|EEZ77439.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 1175 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 348/1065 (32%), Positives = 543/1065 (50%), Gaps = 46/1065 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YS+L+GA + ++ + A Q A+AITD F A EF ++ A Sbjct: 1 MAK--DFAHLHVHTEYSMLDGAAKIKKLVAQAKAQNQKAVAITDHGYCFGAYEFYKECKA 58 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 G++PIIG + + + + LL +G L Sbjct: 59 QGVKPIIGVEAYMTPGTSRFGSDRVLWGEEGQRADDVSARGAYTHLTLLAYNNKGLHNLF 118 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + SR L Q + R+ + L+ EGLI G SG + A + Sbjct: 119 RMDSRASLEGQMGKWPRMDMDLLETYH-EGLIATAGCPSGEVQTRLRLGQFDEAYEAAGR 177 Query: 174 FKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + LFG + YV + H ++ ++++ LA + PL+ATN+S ++ D D + Sbjct: 178 MQDLFGKENYYVEVMDHDNSIEKRVRNELLDLARKIDAPLIATNDSHYVEAGDAPIQDAM 237 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + + DR ++L++ EM +F DLP A ENT+ +A RC+ Sbjct: 238 LCINSGSTLQDPDRFTFDGTGYHLRSSEEMHELFGDLPGACENTLLVAERCNVSFTTADE 297 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++ + + GL VR + D R+R D+E++VI + Sbjct: 298 GANYMPV-FPVPEGEDLTSWFVKEVDRGLHVRFGE------RIPADVRERADYEVSVILQ 350 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+V+D+I WAK+N I VGPGRGSGAGS+ AYAL IT++DP+R LLFERFLNP Sbjct: 351 MGFPGYFLVVSDYILWAKRNGIRVGPGRGSGAGSMVAYALQITELDPIRHGLLFERFLNP 410 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD D+DF + RR EVI YV+ KYG E+V+Q++TFG+++ K AL+D R L P+ Sbjct: 411 ERVSMPDIDVDFDERRRGEVIEYVEKKYGAEKVSQVVTFGTIKTKQALKDSARVLGYPFE 470 Query: 471 QVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGL 521 +R+ K +P ++L I ++ FR+ D ++ E++Q L GL Sbjct: 471 MGERMTKALPPTVQGKDIALADIHNEKAERFVEAGDFRQLVAGDQDASKVFELAQGLAGL 530 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA +++ PL ++P+ + +TQF E+ G++K DFLGL LT Sbjct: 531 TRQWGVHACAVLMCSEPLMDVIPIMKRPSDGATITQFEYPLCEELGVLKMDFLGLSNLTT 590 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++ +LD + +V + + DD T+ LL TLG+FQL+ SGMR L+ M+P Sbjct: 591 IEDALDNIVYNGKERVAIEEVELDDQPTFELLQRADTLGVFQLDGSGMRALLKQMRPTEF 650 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPM----LKETQGVIIYQEQ 694 EDI A+ +LYRPGP+ + ++I IHP ++ L T G+I+YQEQ Sbjct: 651 EDISAVSALYRPGPMGMNSHTSYALRKNGLQEIAPIHPELEEPLREILAPTYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VMQIA++ +G+++ +AD LR+AMGKK + + KQ E F +G NG SK ++E+L Sbjct: 711 VMQIARVCAGFTMGQADTLRKAMGKKKLDVLQKQFEGFSAGMLANGYSKECVDRLWEILV 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSH+A Y VISY TA++K +YPVEF+AA +T + DN +K+ + + R+ I Sbjct: 771 PFAQYAFNKSHSACYGVISYWTAFLKANYPVEFMAALLTSKKDNKDKLALYLGECRRMGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVD 873 ++ P VN DF ++ + L+A++ VG I+ F S +DF +V Sbjct: 831 TVLVPDVNDSDSDFSAVGEQVRFGLSAVRNVGANVVEGILGARREKGAFTSFQDFLDKVP 890 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +E LV AGA D GYSR LL ++ ++KN ++F Sbjct: 891 LQVCNKRAIECLVKAGAFDSMGYSRKALLAKVEEAVDSVVSLKKNEAAGQFDLFGGADVD 950 Query: 934 FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + + + V+ ++E+ +LG Y S HPL + +L + + Sbjct: 951 LGAGVDVVVPDIPEWDKKVKLDHERDMLGLYVSDHPLSGMEHVLDRAADTTIVRLMNEES 1010 Query: 992 GNN--IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + LA ++ S Q + ++K G + + E NFFP Sbjct: 1011 IQEGFVSLAGLITSVQPRVSKKNGKLWATIILEDLTGSAEINFFP 1055 >gi|311742780|ref|ZP_07716589.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum DSM 15272] gi|311314408|gb|EFQ84316.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum DSM 15272] Length = 1175 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 361/1062 (33%), Positives = 539/1062 (50%), Gaps = 41/1062 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL VH+ YS+L+GA L+ + ++ A PAIA+TD NL A +F KA A Sbjct: 1 MPSDSSFVHLHVHTEYSMLDGASLLDGLFERTAELGMPAIAMTDHGNLHGAYDFYSKARA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIG + + + + + LL + EG L L Sbjct: 61 HGVKPIIGLEAYLTPNTHRSEKKRVQWNKGGDDDVAGGGAYTHMTLLAESTEGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L Q R L +GLI TG SG I + + A + F+ Sbjct: 121 SSRSSLEGQ-YYKPRADRELLHTY-AKGLIGTTGCPSGEIQTWLRIGNYEKARESAAEFQ 178 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + ++ L H + +++L LP +ATN+S + ED +AHD L+ Sbjct: 179 DIFGRENFFLELMDHGLDIETRVRDGLMRLKRDLALPAIATNDSHYTHPEDADAHDALIC 238 Query: 234 VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V+ +S +R + +Y+K+ +EM S++ D E E Sbjct: 239 VSSGKTISDPNRLKFDGGGYYIKSAAEMRSLWEDKHEMPEACDNTLLIAERCQVEFTESN 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 ++ + EE+ + G+ R + + + R+R + EL V+ Sbjct: 299 GGYMARADVPAGHTEESWFVEEVWRGIHARYGE------TVSDEVRERTEMELQVVRDKG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + GY+L+VADFI WAK N I VGPGRGSGAGS+ AYAL ITD+ PL L+FERFLNP+R Sbjct: 353 YCGYYLVVADFIGWAKDNGIRVGPGRGSGAGSIAAYALRITDLCPLTHGLIFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 SMPDFDIDF + RR EVIRYV KYG ERVA I TFG L++KAA++D R L P++ Sbjct: 413 PSMPDFDIDFDERRRAEVIRYVSEKYGSERVAMIATFGRLKSKAAIKDANRVLDFPFAMG 472 Query: 473 DRLCKLIPND-PAH--------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 +++ K +P D D FR+ AD V ++ + + LEG R Sbjct: 473 EKITKALPADVMGKGVPLPALFDDKHSRYGDGKDFRDLHAADAEVRKIYDTALGLEGQIR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+++ PL +VP+ + + +TQF+ E GL+K DFLGL+ LT+L Sbjct: 533 QWGVHAAGVIMSSEPLIDIVPIMKREQDGAIITQFDYPMCESLGLVKMDFLGLRNLTVLD 592 Query: 584 KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + RGV + L + FDD E Y LL TLG+FQL+ MR L MQPD ED Sbjct: 593 DAVSNIRSNRGVDLVLEDLTFDDPEAYALLGRGDTLGVFQLDGGPMRALLRQMQPDNFED 652 Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVM 696 I A+++LYRPGP+ ++ V Y RK GK+ I IHP + P+L T G+I+YQEQVM Sbjct: 653 ISAVIALYRPGPMGANSHVNYALRKTGKQPIDYIHPELTEALKPILGTTYGLIVYQEQVM 712 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 IAQ L+G++L +AD LRRAMGKK +E ++K+ F +G + G SK ++++L F Sbjct: 713 SIAQELAGFTLGQADNLRRAMGKKKREVLEKEFVGFEAGMMERGYSKGAIKTLWDILVPF 772 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 ADY FNK+H+AAY VISY TA++K YP E++AA +T + +K + + R+ IQ+ Sbjct: 773 ADYAFNKAHSAAYGVISYWTAYLKARYPAEYMAALLTSTRGDKDKSAIYLGECRRLGIQV 832 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 +PP VN F I + L+AI+ VG I+E + DF +V Sbjct: 833 LPPDVNDSIGTFASVGEDIRFGLSAIRNVGDNVVAGIVEGRQAGAYTDFPDFLDKVPLHV 892 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFS 935 N+R+L+SL+ +GA D G+ R L D +++N +++F + + Sbjct: 893 CNKRMLDSLIKSGAFDSLGHRRRALTTIADEAVDAYVDLKRNAAIGQDSLFDGLDDASSG 952 Query: 936 DKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIR 991 I++ + E+ +LG Y S HPL + +LR E + Sbjct: 953 ITISVPDQMPEWEKTQLLAFERDMLGLYVSDHPLRGLEHVLRASSDCSLGELMVDTERAD 1012 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ ++ ++KG +T + E FP Sbjct: 1013 GSTVTICGLITGVSRRMSKKGDTWASITVEDLEGGVEVMVFP 1054 >gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans K601] gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans K601] Length = 1182 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 405/1057 (38%), Positives = 588/1057 (55%), Gaps = 59/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + A D QPA+A+TD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ +VLLV +GY L EL++R + + K Sbjct: 62 VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL E+ EGLI+L G +GP+ +A A L +F R Y+ +QR Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA +LP+VAT+ F + + YEAH+ + +A +++ R R Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+ L + P LP F I E Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ RL + + Y +RL+FEL I +M F GYFLIV DFIQ Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + A+ + E + V ++E++Q+LEG+ R+ HA G Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + DF+ Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R +P DD TY L T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + I PP +N Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A PF SL DFC RVD + Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +N+R +E+L+ AGA D +R L+ S+D +A N +F G Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLAN--ANQGGLFDMMGDDAIG 943 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + + L + + R E+ +GFY SGH D + +R+ E + Sbjct: 944 SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 LA +V + ++G + + EA Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037 >gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3] gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3] Length = 1170 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 395/1044 (37%), Positives = 579/1044 (55%), Gaps = 30/1044 (2%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P F+HL+VHS +S+++G + ++ AA PAIA+TD N ++F A +A Sbjct: 7 SHDPKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHSA 66 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++P++G + Q + I L EGY+ + EL+S+ Y Sbjct: 67 GVKPLVGVDFWV----------QSEILEKEQFRITALAMDNEGYKNITELISKAYFRGHV 116 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + WL+E G+I+L+G G + + ++A + ++ F R Y+ Sbjct: 117 GGRAILDQDWLKEYNH-GIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLE 175 Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R + ++ A H+LP+VATN +F ++ ++AH + + + + + Sbjct: 176 LIRTGRVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDER 235 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP + + YL++ EM +FSD+PEAL+N+VEIA+RC+ L++ LP F + I Sbjct: 236 RPHDYSEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPT-QGKPI 294 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 R A LE + + Y +RL EL VI M F GYFLIV +F Sbjct: 295 NDYFIEVSRQGLNARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVMEF 354 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 355 IQWSKDNGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDFC 414 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RRDEVI +V YG + V+QIITFG++ AKA +RDVGR L PY VD + KL+P P Sbjct: 415 MERRDEVIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPTP 474 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S ++ R +E V L+++ + LEG R+A HA G+VI ++ Sbjct: 475 GMTLSKA-FEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDFA 533 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++Q +LD ++ Sbjct: 534 PLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIEI 593 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I + + + LL T +FQLES GM+ + +QPD ED+IALV+L+RPGP+ + Sbjct: 594 ERISLTEPKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGSG 653 Query: 659 VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + RK+G+E + H + +L T G+I+YQEQVMQIAQ+LSGY+L AD Sbjct: 654 MVDNFIERKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGAD 713 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM KQ+ F GA NGI +A+ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 714 MLRRAMGKKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 773 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT WMKT YP F+AA ++ +MDN +K+ + ++ + + PP VN F V Sbjct: 774 VSYQTLWMKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQFKFNVD 833 Query: 832 DN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 N RI Y + A+KGVG I+EA F L DFC+RVD K +R++E L+ AG Sbjct: 834 KNLRIIYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILAG 893 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948 ALD G R L+++L A ++ + ++F +D + K Sbjct: 894 ALDNLGPHRAALMENLPLALASATQHKRAESFGQCDLFGVLTTDSADIENRFSKVEKWPE 953 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 E+ LG Y +GHP++ Y+ +R K + + RG N R+A +++ + Sbjct: 954 KQWLAGEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAGLIIGLRVMV 1013 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G R+G +T + + F Sbjct: 1014 TKAGKRMGILTVDDRTARIDITIF 1037 >gi|320107146|ref|YP_004182736.1| DNA polymerase III subunit alpha [Terriglobus saanensis SP1PR4] gi|319925667|gb|ADV82742.1| DNA polymerase III, alpha subunit [Terriglobus saanensis SP1PR4] Length = 1173 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 399/1058 (37%), Positives = 601/1058 (56%), Gaps = 43/1058 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+GA ++ + + Q A A+TD N++ A+ F G+ Sbjct: 2 AAEFTHLHLHTDYSLLDGACDVDKLAAHLKKTGQTAAAMTDHGNIYGAVHFFDAMEKKGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC+L + T + ++L EGY+ L+ L S L + + Sbjct: 62 KPILGCELYLS------KTADHREMADGYNHFLVLAENEEGYKNLVRLTSEASL-NGFYR 114 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ +L + TEGLI +G +G +++ + + A+K F ++FG + ++ + Sbjct: 115 KPRVSKEFLSK-HTEGLIGFSGCLAGEVNQHLMGDRYEEAKKSAGMFSEMFGKNNFFLEI 173 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H D+ + ++ +PL+ATN+S ++ +D AH++L+ V + ++ +R Sbjct: 174 QDHGLEPDKKVCDALFKMEKELGIPLIATNDSHYVEADDSRAHEILLCVQTAGSMNDPNR 233 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y+K EM F+ PE T++ RC+ +Q P F E ++ Sbjct: 234 FRFDTQEFYIKTAEEMHRTFAHAPEVCTRTMQFIDRCNLKMQKVKDPFPAFPVPEGMTLE 293 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E R LE +A +Y +RL+ EL I +MKF GYF+IV D Sbjct: 294 SYFEEICRKGLKKRLETSVAHLRERGLLRKTISEYEERLNTELACIKQMKFPGYFMIVWD 353 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++A++ NIPVGPGRGS AGS+ AY + ITDIDPL+ LLFERFLNP+R+SMPD DIDF Sbjct: 354 FIRYAREQNIPVGPGRGSAAGSLVAYVMEITDIDPLQHELLFERFLNPERVSMPDIDIDF 413 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR+EVI YV+ KYG+++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+IP Sbjct: 414 CMNRREEVIEYVKRKYGNDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIPAT 473 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + + D + +A +DP + L++ +Q+LEGL R A HAAG+VI +PL++L Sbjct: 474 IGISIEQA-MKDSTALGQAYDSDPRIKELIDAAQRLEGLVRGAGVHAAGVVIAPQPLTEL 532 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ R VT ++MK I+K GL+K DFLGL TLT++ L + RGV+VD++ I Sbjct: 533 VPVTRAKGEG-IVTAYDMKAIDKMGLLKMDFLGLTTLTVIDDCLKLIKLNRGVEVDMATI 591 Query: 602 PFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658 P DD T+ + T G+FQ ES GMR L +P IED+ AL +LYRPGPI I Sbjct: 592 PLDDAVTFEKVFHRALTSGVFQFESGGMRDVLRRYKPTSIEDLTALNALYRPGPIQGGMI 651 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK G+ + I P ++ +L+ET GVI+YQEQVMQI+ +++GYSL AD+LRRAMG Sbjct: 652 DDFIERKWGRRAVEYILPDLEGLLRETLGVIVYQEQVMQISSVIAGYSLGGADLLRRAMG 711 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ++ F+SGA+ K A +F+L+ +FA YGFNKSH+AAYA+++Y TA+ Sbjct: 712 KKNAEEMAKQRDLFMSGAAAKKHPKDKAGQLFDLMEQFAGYGFNKSHSAAYALLAYHTAY 771 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +KTHYPVEF+AA +T E E + K+ + R+ I + PP V +F + I + Sbjct: 772 LKTHYPVEFMAALLTSETSKPENVVKYISECRELGITVQPPDVQISDANFTPAGDVIRFG 831 Query: 839 LAAIKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 L AIK VG I++A A+ F SL DFC +V+ K LN+RV ESL+ AGA+D Sbjct: 832 LTAIKNVGGNAIECIIKARRELQAEGKTGFTSLWDFCEKVELKLLNKRVFESLIKAGAMD 891 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSS 949 FG R ++ ++D + AQ +++ +F S + L + + + Sbjct: 892 SFGP-RARVFVAVDGAMERAQKSQRDAAAGQHGLFGIFDSGPTDVSPQDDLPQVAEWDEH 950 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRG------NNIR 996 R +NE+ VLGF+ SGHP+D Y+ LR M + + RG N I+ Sbjct: 951 TRLQNEKEVLGFFVSGHPMDKYREKLRNMKVIAASVACEMKPEPQIFRRGGQQEPQNEIQ 1010 Query: 997 LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 +A ++ + K+++ G + + + FP Sbjct: 1011 IAGVITGLKVAKSKRSGEMYAQACLEDTTGKIDLIAFP 1048 >gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5] gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5] Length = 1139 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 476/1037 (45%), Positives = 657/1037 (63%), Gaps = 27/1037 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL EGA+ + I + PA+AITDT+NLF ++EFSQ Sbjct: 1 MPHA-DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+GCQ+ + D ++ +VLL A G+ L +L SR +L + Sbjct: 60 KGVQPIVGCQIGLARTDLPRLPPDP---------LVLLAKDATGFANLSKLSSRSFLDTE 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +I L L++ EGL +LTGG GP+ R A + L + F DRL V Sbjct: 111 PGLRPQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAV 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L+RH +R E ++ LA LPLVATN F +E +EAHD L+ +A V+S+ Sbjct: 170 ELERHDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEA 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R RVTP H+ K +EM F+DLP+A +NT+ IARRC+ P+LP + Sbjct: 230 ERRRVTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLPICPKVRD--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E LR A GL +RLA A+ YR+RL EL +I +M F GYFLIVADF Sbjct: 287 GATEAETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+P Sbjct: 406 QERRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNP 465 Query: 484 AHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P+ L D + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL +L Sbjct: 466 AKPIPLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLDEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+Y+D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL G VD++ IP Sbjct: 526 VPLYKDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L+ G+FQ E+ G R L M+PD ED+IA V+L RPGP+ NI Y Sbjct: 586 LDDAKTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+ S P I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 ARKHGES-WESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+ Q++ F+ GA G ++ AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ + Sbjct: 705 AEMEAQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837 +P F+AASM+L N EK+ QDA + I ++PP +N DF V I Y Sbjct: 765 HPAAFIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAAIK VG + ++ A A++PF L DF +RVD + LN+ +E L AGA D + Sbjct: 825 ALAAIKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ + + + AQ ++R + N+F + + L + R E Sbjct: 885 RARVAAGAELLVRRAQAEAESRASGQINLFGDAAAP--EPLPLPDVPDWPAFERLSFEAE 942 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +G++ + HPLD Y +LR++G+ E+ A ++LA VV ++++ TR GSR+ Sbjct: 943 AVGYHLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRM 1002 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ A +E F Sbjct: 1003 AWVMLSDQAGGFEVTLF 1019 >gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC 33624] Length = 1484 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 356/1086 (32%), Positives = 553/1086 (50%), Gaps = 75/1086 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61 +S F HL HS +S+L+ S++++++ A +Q PA+A+TD N+ A F+++ Sbjct: 252 QSAPFAHLHNHSQHSVLQSTASISDLVNAAAKEQMPAVALTDHGNMMGAFHFTKEVAKYN 311 Query: 62 ---------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 A G ++PIIGC+ + + KT IVLL Sbjct: 312 KEAKAKNARAQEEGNAPTHTLLKPIIGCEFYVC------ENHLDKTKKDNGYQIVLLAKN 365 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 EGYQ LI++ S Y + RI +Q + +I L+G G I ++ Sbjct: 366 KEGYQNLIKMASIAYT-EGFYYVPRIDKEIVQRY-KDQVIALSGNLQGEIPSKILNQGNR 423 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ LL +K+LF D Y+ L RH D R + +++LA H + LVATNN+ +++ +D Sbjct: 424 QAEEALLWWKELFQDDFYIELMRHGQEDENRANTVLIELAKKHAIKLVATNNTYYINPKD 483 Query: 225 YEAHDVLMAVAHSTVV-------SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V ++Y K+ +M +F D+PEA+ + EI Sbjct: 484 ANAHDILLCVKDGEKQATSIGQGRGFRNGLPNEEYYFKSSEQMKELFKDIPEAILSIQEI 543 Query: 278 ARRCSFILQVHAPILPRFIEK------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331 + + +LP+F + +K E LR+ G E Sbjct: 544 IDKITPYELARDILLPKFSIPKEFQVEDDPTGKKGENKYLRHLTYIGAEK-------RYK 596 Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + R+R+DFEL++I + + GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 597 ELTDEIRERIDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYCLG 656 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT+IDP+ + LLFERFLNPDR+SMPD DIDF D R V+ YV KYG +VAQI T+G+ Sbjct: 657 ITNIDPIAYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQISTYGT 716 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFRE 500 + AK+++RD R L +P D++ KL+PN + + + ++ Sbjct: 717 MAAKSSIRDTARVLDLPLKDADQIAKLVPNISLKKIFSLPDEELKEKVGSDFPKVTELKK 776 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 + ++ + LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 777 IAQGHDLAAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDLFVTQFDN 836 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E AGL+K DFLGLKTLT+L+ ++ + +R D+ IP DD TY L T+G Sbjct: 837 SVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHNITLDIEEIPLDDVPTYELFQRGETIG 896 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ + ++P D+IA+ +LYRPGP+D I + +RK+GKE I ++ Sbjct: 897 IFQYESPGMQKHMRELKPTVFGDLIAMNALYRPGPMDYIPSFIHRKHGKEPITYDLADME 956 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LK+T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK+K+ + + K +FI G K Sbjct: 957 EYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKFIEGGGKK 1016 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+AA ++ M+++ Sbjct: 1017 GHPAETLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVLSNNMNDI 1076 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858 + I F + + I+++ P VN F V + I + + A+KG+G I+E Sbjct: 1077 KSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVDTIVETRK 1136 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909 P+ S+ D R+D K N++ ESLV AG D F R Q L+ I Sbjct: 1137 SGPYKSVFDMVKRIDLKSANKKAFESLVLAGGFDSFPEVHRAQFFHQEPSENMVFLEKIL 1196 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +Y +++ + ++F T + + K + + E+ V+G Y SGHPLD Sbjct: 1197 RYGAKAQESAKSIQLSLFGDSPETQFPEPKMPKTEEWSPMEKLHREKEVVGIYISGHPLD 1256 Query: 970 VYKPILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 ++ L+ + K E +R ++ + K ++ G G T + + Sbjct: 1257 IFHYQLKYLCNKEVIELAEGIERFENQEVRFGGIITKIEHKTSKTGKGWGLFTIEDYSGG 1316 Query: 1027 YEANFF 1032 E F Sbjct: 1317 AEFRIF 1322 >gi|309812629|ref|ZP_07706373.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185] gi|308433324|gb|EFP57212.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185] Length = 1182 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 367/1072 (34%), Positives = 552/1072 (51%), Gaps = 53/1072 (4%) Query: 5 LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S SFVHL H+ YS+L+GA ++++ + PAIA TD LF A EF K+ Sbjct: 1 MSSQSKSFVHLHNHTEYSMLDGAARIDDMFARAQEFGMPAIATTDHGYLFGAYEFWSKSR 60 Query: 64 AAGIQPIIGCQLDIDMQDN-----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 ++PIIG + + + + + LL EG L Sbjct: 61 KYDVKPIIGLEAYMTPGTHRTDKTRTTWGERGQEADDVSNRGLYTHMTLLAKNNEGMHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 + S+ L + R+ L GT G+I TG SG I A + Sbjct: 121 FRMGSQASLDQVYSKYPRLDRELLNAYGT-GIIGTTGCPSGEIQTRLRLGQYDKAREAAA 179 Query: 173 TFKKLFGD-RLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 F+ +FGD Y L H +R S +++LA LPL+ATN+ + ++ED H Sbjct: 180 EFRDIFGDGNFYCELMEHDLDVDIERRVRSDLLKLAKDLNLPLLATNDLHYTNKEDAVHH 239 Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 D L+ + + ++ +R + + + YLK+ EM +F D P+A +NT+ IA +C Sbjct: 240 DALLCINSGSRLTDPNRFKFGSHEFYLKSADEMRHLFRDHPDACDNTLLIAEQCEVSFTE 299 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 R++ + ++E + + GL R +G Y E +V Sbjct: 300 GE---GRYMPRFPCPEGEDETSWFIKEVETGLRRRFPEGVPDYAVKQAKY------EQDV 350 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I + GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERF Sbjct: 351 IIGKGYPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPVPHGLIFERF 410 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R SMPDFD+DF + RR EVIRYV +KYG +RV+ I+T+G+++AK A++D R + Sbjct: 411 LNPERQSMPDFDVDFDERRRSEVIRYVVDKYGEDRVSYIVTYGTIKAKQAVKDASRVMDF 470 Query: 468 PYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518 P++ +++ K +P D V L + D+S FRE +DP+ + + L Sbjct: 471 PFAIGEQMTKAMPADVMGKGVPLAKMYDESHPRYAEGGEFRELIASDPTFKNIFDAGVGL 530 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R HAAG+++ PL ++P+ R ++ +TQF+ E GL+K DFLGL+ Sbjct: 531 EGLKRQWGVHAAGVIMSSEPLIDVIPIMRRLQDGAVITQFDYPSCETLGLVKMDFLGLRN 590 Query: 579 LTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LT+L +L + + D +TY LL TLG+FQL+ GMRQ L M Sbjct: 591 LTILDDALKNIKANRDEDIDLDALSKDMTDAKTYDLLARGDTLGVFQLDGGGMRQLLRLM 650 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689 QPD EDI A ++LYRPGP+ + + RKNGK++I IHP ++P+L T G+I Sbjct: 651 QPDNFEDISAALALYRPGPMGANAHTNFALRKNGKQQIDYIHPELTEALEPILNMTYGLI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +D + F G NG SK + Sbjct: 711 IYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEKGMLDNGFSKESVQTL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + +L F+DY FNK+H AAY ++SY T ++K +YP E++AA +T D+ +K + + Sbjct: 771 WSILLPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLNEC 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 R I+++PP VN +F I + L AI+ VG+ I+ A + F S EDF Sbjct: 831 RHMGIKVLPPDVNESIGNFAAVGEDIRFGLEAIRNVGSNVVAAIIAAREEKGRFTSFEDF 890 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 + + LN+R +ESLV AGA D G+ R L+Q ++ ++ + +++FA Sbjct: 891 LRKCPATVLNKRTVESLVKAGAFDDLGHQRQGLVQIHESYVDALIDEKRKEEHGQDSLFA 950 Query: 929 --HEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 + + L + + + E+ +LG Y S HPL + L + Sbjct: 951 GFGDDAPGIEFAALPQIPPIEWDKQTKLAFEREMLGLYVSDHPLFGIEAALAQFSDTSVA 1010 Query: 985 ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + A G + +A ++ Q K+T+KG T + E FFP Sbjct: 1011 RLLAEDALPDGATVTIAGLITGLQIKRTKKGDLWAIATVEDMDGAIECLFFP 1062 >gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576] gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576] Length = 1234 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 59 APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 117 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L Sbjct: 118 RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 167 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SWL+ EGL+ L+G G I A + A + + ++F Sbjct: 168 NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 227 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 228 YIELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 287 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 288 NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 347 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYF Sbjct: 348 MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 403 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 404 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 463 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 464 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 523 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 524 LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 583 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 584 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 643 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPG Sbjct: 644 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 703 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 704 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 763 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 764 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 823 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 824 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 883 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ Sbjct: 884 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 943 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QLL S+ + A+ N +F G + + L Sbjct: 944 RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1000 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + Sbjct: 1001 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1057 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1058 QMTQRGK-MVIALLDDGTGQCEVTVF 1082 >gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1159 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 518/1060 (48%), Positives = 683/1060 (64%), Gaps = 50/1060 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI-----------TDTNNLF 53 + S F+HL VHS++SL EGA+ + ++ TDTNNLF Sbjct: 1 MPGSVGFIHLHVHSAFSLREGAIKIEKLVKL-----------AAADAMPALALTDTNNLF 49 Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 ALEFS+K +GIQPI G QL +D D M +G+ ++VLL GY L+ Sbjct: 50 GALEFSEKLVKSGIQPIAGLQLTVDFGDGAAMAPRGEENGAGRANLVLLAQDEAGYVNLM 109 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L SR +L + L +GLI L+GG GP+DRAF + A R Sbjct: 110 HLTSRAWLDPVPGDPPHVRFDQL-HGHADGLIALSGGPDGPLDRAFAAQRPEQAVLRAQH 168 Query: 174 FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 LF +RLYV LQRH +R E ++ LAY LPL ATN F + DYEAHD L+ Sbjct: 169 LAALFPNRLYVELQRHSLQAERSNEPLLLDLAYDRSLPLAATNEPYFAAASDYEAHDALL 228 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 +A V+ + R +++P+H LK R+EMV++F+DLPEA NTVEIA RC++ PIL Sbjct: 229 CIAEGAVLGEPQRRQLSPEHRLKTRTEMVALFADLPEATANTVEIAMRCAYRPLTRKPIL 288 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PRF + D EE ELR +A AGLE RLA A G+ DYR RL FEL++I +M+ Sbjct: 289 PRFGDTGHAD---EEAKELRRQAEAGLEKRLAAHPPAPGFTEDDYRARLAFELDIIVKMQ 345 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIVADFI++AK +IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R Sbjct: 346 FPGYFLIVADFIKYAKSQDIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPER 405 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFCQDRRDEVI YV+ +YG ++VAQIITFGS A+ +R+VGR L+MP QV Sbjct: 406 VSMPDFDIDFCQDRRDEVIAYVRRRYGEDKVAQIITFGSFLARGVMRNVGRVLEMPLGQV 465 Query: 473 DRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 D+L KL+P +PA PVS QAI + R +EA ++P V R+L I++ LEGLY +ASTHAAG Sbjct: 466 DKLAKLVPQNPAAPVSLKQAIEGEPRLQEAASSEPRVARMLTIAETLEGLYSNASTHAAG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 IVIGDRPL LVP+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L + LA+ Sbjct: 526 IVIGDRPLEHLVPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLAK 585 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 RG+ VDL+ IP DD +TY +L T+G+FQLES+GMR+AL M+ D EDIIALV+LYR Sbjct: 586 RGIIVDLAKIPLDDQKTYAMLGRGETVGVFQLESAGMRKALVEMRADHFEDIIALVALYR 645 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+ NI Y K G+EK IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD Sbjct: 646 PGPMANIPTYCAVKLGEEKADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEAD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKKIK EMD Q+ RF++G+ G++K A IF+LLAKFADYGFNKSHAAAYA+ Sbjct: 706 LLRRAMGKKIKAEMDAQRSRFVTGSVDRGLTKKQADEIFDLLAKFADYGFNKSHAAAYAL 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 I+YQTAW K ++PVEFLAASMTL+ N +K+ +FC +AR+ I + P + VDF V Sbjct: 766 IAYQTAWFKANHPVEFLAASMTLDKSNTDKLAEFCNEARRLGIPVDRPCIQKSGVDFDVA 825 Query: 831 --GDNR-------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 I Y+L+AIKGVG+ A ++ A A + F L DF R++ + Sbjct: 826 LENKGAGQESKESENANLHIRYALSAIKGVGSAQAEALVAARAGRSFKDLSDFTHRLNPR 885 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 ++N+R+LE LV AGA D R ++ +++ + A + +F + Sbjct: 886 EINKRMLECLVAAGAFDTLDKDRAKIFATIETLLAMANRRCEEEAAGQSVLFGGPAAS-- 943 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--- 992 I + + R + E +GF+ SGHPLD Y IL ++ ++ + ++ Sbjct: 944 -AIIFPQTDPWPLAERLQREFDAVGFFLSGHPLDGYASILSRLKVQRWATFARQVKQGQA 1002 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RLAA V+ +++++T+ G+++G V S+ + +YEA F Sbjct: 1003 SAARLAATVLDRKERRTKSGTKMGIVQLSDQSGQYEAILF 1042 >gi|229817355|ref|ZP_04447637.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM 20098] gi|229785144|gb|EEP21258.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM 20098] Length = 1184 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 341/1070 (31%), Positives = 536/1070 (50%), Gaps = 52/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FVHL H+ YSLL+GA + + A PA+ ITD N+ A E Sbjct: 1 MSDSGNFVHLHNHTHYSLLDGASKIPELAKYAADLSMPAVGITDHGNMHGAYEMYTNCVK 60 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 G++PIIG + + + + + + L EG LI Sbjct: 61 VGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAENDEGLVNLI 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L + ++ R+ L ++G+I +G SG I A + Sbjct: 121 KASSVANLEGRVQRYPRMDKEVLSTY-SKGVICGSGCPSGIIQTRLALGQFDEALRAAGE 179 Query: 174 FKKLFG-DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG D ++ + H R ++++A + PL+ATN+S ++ ED EA D + Sbjct: 180 LQDIFGKDNFFIEIMDHGLTIENRNIPGLLEIAKKLDAPLLATNDSHYVHAEDAEAQDAM 239 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + + +R + Y EM IF + P A +NT+EIA RC+ + H Sbjct: 240 LCINSGSHLDDPNRFKFDGTGYYLKPAEEMREIFKEFPGACDNTLEIAERCNVMFDDHED 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + +E + K GLE R ++ ++ D+E VI + Sbjct: 300 GAFMPQFDCPEG--WDEASLFLKKVEEGLERRYDNNV------PEEVSKQADYECGVICQ 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL+ L+FERFLNP Sbjct: 352 MQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+S+PD D+DF + R VI Y KYG ++VAQ + +G ++ K AL+D R + ++ Sbjct: 412 ERVSLPDIDVDFDPEGRLHVIDYCGEKYGRDKVAQCVIYGVIKTKQALKDSARIMGYDFA 471 Query: 471 QVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 D++ K +P + + A+ FRE +DP ++++ ++ +EGL Sbjct: 472 MGDKVTKALPPSKNGKDASLKEIFDPTSKHYAEAREFRELYESDPDAHKIIDKAKTIEGL 531 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++G P++ P+ + + T F E GL+K DFLGL LT+ Sbjct: 532 IRQTGVHACATIMGSEPITDTSPLLQR-VDNTVTTTFEYHTCETLGLVKMDFLGLSNLTV 590 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 +Q +L + VD + IP DD ETY LL TLG+FQL+S GMR L+ ++PD Sbjct: 591 IQDTLKNIVANGKDPVDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLKSLKPDNF 650 Query: 641 EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694 DI AL++LYRPGP+D Y RKNG +KI IHP ++ LK+ T G+I+YQEQ Sbjct: 651 NDISALIALYRPGPMDMDSHNNYAKRKNGLQKIEPIHPELEEPLKQVLDETYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL +ADVLRRAMGKK E + K+K F G ++G S+ A ++++L Sbjct: 711 VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFQGMKEHGYSEEAAQAVWDVLV 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + DN +K + +AR+ I Sbjct: 771 PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGTKDNKDKTALYLGEARRMGI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRV 872 Q++ P VN + + + + L AI+ VG I+ F + DF RV Sbjct: 831 QVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGKRGKFVNFMDFVRRV 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 LNRR++ESL+ AGA D +R L Q + + +++ ++F+ Sbjct: 891 PLSALNRRLVESLIKAGAFDSIDPNRRALYQIHETAIESVVGLKRKEAEGQFDLFSDMDD 950 Query: 933 TFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 +T+ + + E+ +LG Y S HPL +L + Sbjct: 951 ADEQDVMGDASVTVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMTAVLAGLREMSIAHL 1010 Query: 987 VATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + G + +A +V + ++ +++G+ VT + + FF Sbjct: 1011 IDRAKTMGEGQQVTIAGLVTNVDRRVSKRGNAWAIVTVEDLESSIQCMFF 1060 >gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma proteobacterium NOR5-3] gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma proteobacterium NOR5-3] Length = 1168 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 409/1046 (39%), Positives = 599/1046 (57%), Gaps = 42/1046 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL+VHS YSL +G + + ++ ++A + PA+A+TD N + ++F + A +AG++ Sbjct: 2 SEFVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G + + + LLV EGY L L+SR Y Q Sbjct: 62 PIFGADVWVTDS----------LKSDDAYPLCLLVMNPEGYLNLTRLLSRAYREGQTLDG 111 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ WL E G EGL+ L+ G++G + +A +A +R+ +F R Y+ L R Sbjct: 112 PRVLWEWLSEAG-EGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHR 170 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D + LA P+VATN+ F+ ++EAH+ + +A S V+ R R Sbjct: 171 TGRVGDEEHVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQR 230 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + YL++ EM +F D+PEALENT+ IARRCS +++ LP + + Sbjct: 231 RYSQEQYLRSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGM----T 286 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVAD 362 + R A GL+ RL I + +AQ +YR+RLDFEL+ I M F GYFLIV D Sbjct: 287 MDTFFRESAHRGLDERLQTLQIHRRENAQALEREYRERLDFELDTIIAMGFPGYFLIVMD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK++ IPVGPGRGSGAGS+ AY+L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FIRWAKEHGIPVGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RRDEVI YV + YG E V+QIITFG+L AKA +RDV R Y DRL K+IP + Sbjct: 407 CMERRDEVIDYVADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +AI + ++ D + +++ +LEG+ R+ HA G+VI L+ Sbjct: 467 VGMTL-QKAIEQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597 +Y D VTQF+ +E AGL+KFDFLGL+TLT++ + + Q +D Sbjct: 526 SALYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLD 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++ IP DDH ++ LL + T +FQLES GM++ + ++PDC EDIIALV+LYRPGP+ + Sbjct: 586 INQIPLDDHASFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQS 645 Query: 658 IVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V + K H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L A Sbjct: 646 GMVDNFIDRKHGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM KQ+ F +GA+ G+ +A +F+L+ KFA YGFNKSH+AAYA Sbjct: 706 DLLRRAMGKKKPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++SYQTAW+K+HYP F+AA M+ E+DN +KI F ++ R+ + + P VN F V Sbjct: 766 LVSYQTAWLKSHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTV 825 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I Y L AIKG+G ++E+ + PF L DFC+R D +KLNR+ LE+LV + Sbjct: 826 SEAGEIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFS 944 GA D G R LL +D+ + A+ NR ++F + L Sbjct: 886 GAFDSLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQGDPYAELRHIR 945 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LG Y +GHP+D + +R+ + + RG N R+A +++S Sbjct: 946 PWTDRERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRG-NCRVAGLILSM 1004 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + K+ +GS + + + EA Sbjct: 1005 RAMKSARGS-MAVFVLDDRSARLEAT 1029 >gi|227500122|ref|ZP_03930193.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227217837|gb|EEI83134.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 1150 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 365/1052 (34%), Positives = 585/1052 (55%), Gaps = 48/1052 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VH+ YSLL+G ++ +LD+ +IAITD +++ A+EF ++A I+PI Sbjct: 5 FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMESIAITDHGSMYGAIEFYKQAKKRDIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ + +D+ + + ++LL + EGY+ LI++VS Y ++ R Sbjct: 65 IGCEVYVSEKDHKIKDSTNR----RYYHLILLAKSKEGYKNLIKIVSEAY-VNGFYYKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + ++++ +I L+ +G +++ N + A+K L +++ FG ++ LQ H Sbjct: 120 VSFDFIKK-HAGDIIALSACLNGEVNQKILENDYEGAKKAALNYEEAFGKGNYFLELQNH 178 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + +++ ++ +PLVATN+ ++++ED+ DVL+ + ++ +DR R+ Sbjct: 179 GIKEESLVNAKLNRIHQETAIPLVATNDVHYVNKEDFYYQDVLLCIQTGKLIKDEDRMRM 238 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + YLK+ EM IF+D +AL NT IA +C H P LP F + + Sbjct: 239 PSSEFYLKSYEEMEEIFADYEDALTNTKLIADQCKLEFTFHEPHLPYFSK---VEEGLSN 295 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ GL G ++ R R D E+NVI+ M + YFLIV DF+++A Sbjct: 296 LEYLKKLVDQGLIK-------KYGKIDKEIRSRADMEINVISSMGYVDYFLIVWDFVRYA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + N+I VGPGRGS AGS+ +YAL IT IDP++++L+FERFLNP+R+SMPD DIDF R Sbjct: 349 RDNDIAVGPGRGSAAGSIVSYALDITQIDPIKYNLIFERFLNPERVSMPDIDIDFDYVLR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D V+ YV + YG + V+QIITFG +QA+ A+RDVGR L + Y++VD++ KLIP+ + Sbjct: 409 DRVVDYVNDVYGRDHVSQIITFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPSTLGMTI 468 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A S+F+E +D RL++ ++KLEGL RH S HAAG+VI L+ ++P+ Sbjct: 469 D-KAFEASSKFKEIYESDLEGKRLIDTARKLEGLPRHTSIHAAGVVISKEALTDIIPLAL 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 +D VTQF+M IE+ GL+K DFLGL+ LT+++ ++ + + RG+ VDL I +D Sbjct: 528 S--NDQLVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLGKIDVNDK 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + T+GIFQ ES+GMR L+ ++P +D+IA SL+RPGP+D I Y + KN Sbjct: 586 KVIEQFNKAKTIGIFQFESAGMRNFLKNLRPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + + I P + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK M+ Sbjct: 646 NPKDVSFITPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVME 705 Query: 727 KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 + +E FI G +NG+ + A I++ + FA Y FNKSH+AAY++++ Sbjct: 706 ENREIFIHGRLDEKGEVEIAGCVRNGVDELSANQIYDEMISFAKYAFNKSHSAAYSLVAV 765 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K +YP E++A ++ MD K+ + + + I+++PP VN +F+V + R Sbjct: 766 QTAYLKHYYPEEYMANLISSVMDQSTKLYLYVNETKALGIEVLPPDVNKSLAEFRVEEGR 825 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGA 890 I + L+AIK +G I+ A F++ +DF R VD + LN++ +ESL+ AGA Sbjct: 826 IIFGLSAIKNLGINMISAIVRARDKGGKFENFKDFLQRVDEVDQRALNKKGIESLIKAGA 885 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948 D GY+R L+ + K N+ SD + ++ + Sbjct: 886 FDRMGYNRSSLMAIYEKAMASVSENRKVNLKGQLNLLDDFSSVSKKSDDVKIQNINEYPK 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEES-VATIRGNNIRLAAMV 1001 + + E+ VLGFY S HPL L + + + + +A ++ Sbjct: 946 KTKLKLEKEVLGFYISDHPLSDLADRLNDFVNFTSDYKDNLSDLEIQMLDKKFVSMAGVI 1005 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K + T+K + + + E FP Sbjct: 1006 TNKSEIMTKKKQLMSFANLEDMYGSIEMVIFP 1037 >gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305] gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305] gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan 9] Length = 1234 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 59 APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 117 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L Sbjct: 118 RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 167 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SWL+ EGL+ L+G G I A + A + + ++F Sbjct: 168 NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 227 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 228 YIELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 287 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 288 NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 347 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYF Sbjct: 348 MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 403 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 404 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 463 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 464 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 523 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 524 LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 583 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 584 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 643 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPG Sbjct: 644 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 703 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 704 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 763 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 764 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 823 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 824 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 883 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ Sbjct: 884 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 943 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QLL S+ + A+ N +F G + + L Sbjct: 944 RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1000 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + Sbjct: 1001 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1057 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1058 QMTQRGK-MVIALLDDGTGQCEVTVF 1082 >gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are Not Homologous: X-Ray Structure Of Dna Polymerase Iii gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are Not Homologous: X-Ray Structure Of Dna Polymerase Iii gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus] Length = 1220 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 421/1096 (38%), Positives = 602/1096 (54%), Gaps = 82/1096 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60 + F HL H+ +SLL+GA L ++L + D PA+A+TD NLF A+EF + Sbjct: 1 MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 KA A G++PIIG + + + +GK + LL GYQ L+ L SR Y Sbjct: 59 KATAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L + + RI L+E +GLI L+G I + + +AE RL +FGD Sbjct: 118 L-EGFYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGD 175 Query: 181 RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R ++ +Q H ++ + +QV+ + A + L +VATN+ ++ +ED AH+VL+A+ T Sbjct: 176 RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTT 235 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRF 295 + +R R D + E + E +NTVEIAR C L + ++ R Sbjct: 236 LDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRI 295 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334 + + E LR GL R Y Sbjct: 296 -PRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEAL 354 Query: 335 --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + R +EL+VI RM F GYFLIV D+I WA+ Sbjct: 355 ARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWAR 414 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD Sbjct: 415 GHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P Sbjct: 475 RVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AI R D + +++E++ +LEGL RHAS HAAG+VI PL+ LVP+ R Sbjct: 535 LQEAIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D + PVTQ++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD Sbjct: 595 D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDP 653 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T+ LL+ T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R + Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713 Query: 667 GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 G+E + H + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK Sbjct: 714 GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM K +ERF+ GA + G+ + A +F++L FA+YGFNKSHAAAY+++SYQTA++K Sbjct: 774 VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEF+AA +++E + +K+ ++ +DAR I ++PP VN DFKV I + L+A Sbjct: 834 HYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSA 893 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG AR I+E PF SL DF R+ + +N+R LESLV AGALD FG R + Sbjct: 894 VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL SL+ + ++A + + +FA + + L + S + E+ LG Sbjct: 953 LLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVEASPLDEITMLRYEKEALG 1007 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 Y SGHP+ Y P LR++ EE + L+ MV +K TR G + Sbjct: 1008 IYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMA 1066 Query: 1017 WVTFSEPAKEYEANFF 1032 T S+ E F Sbjct: 1067 RFTLSDETGALEVVVF 1082 >gi|319763344|ref|YP_004127281.1| DNA polymerase iii, alpha subunit [Alicycliphilus denitrificans BC] gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC] Length = 1182 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 405/1057 (38%), Positives = 589/1057 (55%), Gaps = 59/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + A D QPA+A+TD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ +VLLV +GY L EL++R + + K Sbjct: 62 VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL E+ EGLI+L G +GP+ +A A L +F R Y+ +QR Sbjct: 111 CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA +LP+VAT+ F + + YEAH+ + +A +++ + R R Sbjct: 170 RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+ L + P LP F I E Sbjct: 230 TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ RL + + Y +RL+FEL I +M F GYFLIV DFIQ Sbjct: 286 EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + A+ + E + V ++E++Q+LEG+ R+ HA G Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + DF+ Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R +P DD TY L T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 586 RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + I PP +N Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A PF SL DFC RVD + Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +N+R +E+L+ AGA D +R L+ S+D +A N +F G Sbjct: 886 INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLAN--ANQGGLFDMMGDDAIG 943 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + + L + + R E+ +GFY SGH D + +R+ E + Sbjct: 944 SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 LA +V + ++G + + EA Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037 >gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] Length = 1146 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 412/1036 (39%), Positives = 592/1036 (57%), Gaps = 32/1036 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +VHL+ H+ YS+++GAL +++++ D Q A+AITD NNLF+ + F + A AG++PI Sbjct: 3 YVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + ++LLV GY L +L+SR +L +Q + Sbjct: 63 IGCDVLL----------GSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL+ EGLI L+G G I +A + A +F R Y LQR Sbjct: 113 VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGG 172 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 V LA LP+VAT+ FL +D++AH+ + +A + R R Sbjct: 173 HAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKF 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T Y K+++EM ++F+D+P AL NTV IA+RC+ +L + P LP F E Sbjct: 233 TAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEG----LTPA 288 Query: 309 NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R +A GLE RL A + Y+QRL++EL +IA+M F GYFLIVADFI Sbjct: 289 KFFRQQAQEGLEQRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFIN 348 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ+ Sbjct: 349 WAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQE 408 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ KYG E V+QI TFG++ A+AA+RDVGR L + Y+ D + KLIP P Sbjct: 409 NRDRVIDYVKEKYGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQ 468 Query: 486 PVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +++ + + + + V +LL+++Q+LEGL R+ HA G++I L+ P Sbjct: 469 HITIADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCP 528 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601 +Y S V+QF+ +E AGL+KFDFLGL TLT+L+ + + L I Sbjct: 529 LYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDI 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD ++Y L+ T+ +FQLES GM+ L +PD EDIIALV+LYRPGP+D I Y Sbjct: 589 PLDDPKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTY 648 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK GKE +V P + +L+ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK Sbjct: 649 CARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKK 708 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM + + F GA+KNGI A IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK Sbjct: 709 PEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKA 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLA 840 HYP EFLAA+M++ +D+ +K+K +DA+ I ++PP VN F D I Y+L Sbjct: 769 HYPAEFLAANMSIALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYALG 828 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIKG G ++ A ++PF SL DF RVD +LN+RVLE+L AGA D R Sbjct: 829 AIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAA 888 Query: 901 LLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFENE 955 ++ +++ YA Q + ++FA + + + L + + + E Sbjct: 889 VMAAVETAMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFE 948 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + +G+Y SGH D +R+ + V + + +A + + ++++G RI Sbjct: 949 KTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-RI 1005 Query: 1016 GWVTFSEPAKEYEANF 1031 + + + E Sbjct: 1006 AILALEDRSGAMEIVI 1021 >gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301] Length = 1139 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 476/1037 (45%), Positives = 658/1037 (63%), Gaps = 27/1037 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL EGA+ + I + PA+AITDT+NLF ++EFSQ Sbjct: 1 MPHA-DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+GCQ+ + D ++ +VLL A G+ L +L SR +L + Sbjct: 60 KGVQPIVGCQIGLARTDLPRLPPDP---------LVLLAKDATGFANLSKLSSRSFLDTE 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +I L L++ EGL +LTGG GP+ R A + L + F DRL V Sbjct: 111 PGLRPQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAV 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L+RH +R E ++ LA LPLVATN F +E +EAHD L+ +A V+S+ Sbjct: 170 ELERHDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEA 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R RVTP H+ K +EM F+DLP+A +NT+ IARRC+ P+LP + Sbjct: 230 ERRRVTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLPICPKVRD--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E LR A GL +RLA A+ YR+RL EL +I +M F GYFLIVADF Sbjct: 287 GATEAETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+P Sbjct: 406 QERRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNP 465 Query: 484 AHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P+ L D + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL++L Sbjct: 466 AKPIPLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLNEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+Y+D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL G VD++ IP Sbjct: 526 VPLYKDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY +L+ G+FQ E+ G R L M+PD ED+IA V+L RPGP+ NI Y Sbjct: 586 LDDAKTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G+ S P I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 ARKHGES-WESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+ Q++ F+ GA G ++ AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ + Sbjct: 705 AEMEAQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837 +P F+AASM+L N EK+ QDA + I ++PP +N DF V I Y Sbjct: 765 HPAAFIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAAIK VG + ++ A A++PF L DF +RVD + LN+ +E L AGA D + Sbjct: 825 ALAAIKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ + + + AQ ++R + N+F + + L + R E Sbjct: 885 RARVAAGAELLVRRAQAEAESRASGQINLFGDAAAP--EPLPLPDVPDWPAFERLSFEAE 942 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +G++ + HPLD Y +LR++G+ E+ A ++LA VV ++++ TR GSR+ Sbjct: 943 AVGYHLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRM 1002 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ A +E F Sbjct: 1003 AWVMLSDQAGGFEVTLF 1019 >gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113] gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113] Length = 1158 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 430/1042 (41%), Positives = 615/1042 (59%), Gaps = 30/1042 (2%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +PSFVHL++H+ YSL++ + + ++ PAIA+TD +N+F+ ++F + A AAG+ Sbjct: 2 APSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + G LL GY+ L L+SR Y Q + Sbjct: 62 KPIIGADIFLA----------GSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQG 111 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ WLQ + +GLI+L+GG G + +A + A + L ++ LF R Y+ L Sbjct: 112 IPRLQWDWLQNL-NDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELH 170 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R + V LA ++ P+VATN+ FL +D+EAH+ + + ++ R Sbjct: 171 RTGREGEEDYLHAAVALALAYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRRS 230 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + YL+ SEM +F DLPEALENTVEIARRC+ L + LP F E I+ Sbjct: 231 RHYSEQQYLRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPEDWSIEA 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E R L K + Y RL EL VI +M F GYFLIVADFI+ Sbjct: 291 FLAAEARQGLEQRLAKLYPLETERKAEQS-AYEARLAEELAVINQMGFPGYFLIVADFIR 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F L+FERFLNP+R+S+PDFDIDFC + Sbjct: 350 WAKKNEIPVGPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDIDFCME 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRD VI YV YG + V+QIIT+G++ AKA +RDVGR L PY VD++ KLIP D Sbjct: 410 RRDWVIDYVSQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKM 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + +A+A+ R + V L+++++KLEGL R+A HA G+VI + L++ VP Sbjct: 470 TLD-KALAESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPY 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600 Y + + VTQF+ IE GL+KFDFLGL+TLT+L +L + ++ + DL+L Sbjct: 529 YCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLLDLAL 588 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659 +P DD ++Y LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+ + + Sbjct: 589 LPMDDSKSYGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMV 648 Query: 660 -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y NRK+G+ ++ HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRRAMG Sbjct: 649 DDYINRKHGRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMG 708 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F +GA + + A IF+L+ KFA+YGFNKSH+AAYAVI+YQTA+ Sbjct: 709 KKKPEEMAKQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAY 768 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 +K HYP ++AA ++ +MDN +K+K F ++ + ++PP VN F G+ I Y Sbjct: 769 LKAHYPASYMAAVLSADMDNTDKVKAFVEECWAMKLDLLPPDVNASNYLFSAQGETAIRY 828 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG I++A + +L +FC R+D +K++RRVLE+LV AGALD G Sbjct: 829 GLGAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALDSLGA 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955 +R L SL+ A+ +N + ++F + + + + + + R E Sbjct: 889 NRATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSYVETKEWDEEQRLALE 948 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTR 1010 + LG Y SGHP+D YK L+++ E + I +A +V S + K R Sbjct: 949 KETLGLYLSGHPIDCYKQELKQIAPCRIAELIDRANNRQNRSQQIMIAGLVGSVRTNKAR 1008 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G R ++T + + E F Sbjct: 1009 QGGRNAFITLEDGSARLEIKAF 1030 >gi|306818530|ref|ZP_07452253.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris ATCC 35239] gi|304648703|gb|EFM46005.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris ATCC 35239] Length = 1273 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 345/1074 (32%), Positives = 549/1074 (51%), Gaps = 52/1074 (4%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + + S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF Sbjct: 1 MEGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAA 59 Query: 62 ACAAGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + LL T EG Sbjct: 60 AVKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEG 119 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 L L S + Q + R+ LQ GL+ +G SG + A Sbjct: 120 MHNLFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEAL 178 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + + +FG + Y+ L H +R +++LA + PL+ATN+S ++++ED E Sbjct: 179 RTAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDRE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFIL 285 D ++ + ++ ++R R Y S M +F DLP+A +NT+ +A +C Sbjct: 239 IQDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKF 298 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 F+ K + EE+ + GL R QG + R+R D+E+ Sbjct: 299 STVD-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEV 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +I +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFE Sbjct: 352 GIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 RFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARIS 471 Query: 466 QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQ 516 +S + L K P + + FR+ + + ++ Sbjct: 472 GAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLAS 531 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL Sbjct: 532 GVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGL 591 Query: 577 KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 K LT++ +LD + DL +P DD TY LL++ TLG+FQL+ GMR L+ + Sbjct: 592 KNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQL 651 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVI 689 +P +DI ALV+LYRPGP+ N I IHP + LK T G+I Sbjct: 652 RPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLI 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ + Sbjct: 712 IYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + Sbjct: 772 WDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868 R+ I+++PP VN F I + LA+I+ VG I++ + S +DF Sbjct: 831 RRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDF 890 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 891 LNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFA 950 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G D + + + E+++LG Y S HPL + +LR++ Sbjct: 951 SLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQI 1010 Query: 984 EESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 E + +R+A ++ S + K +++ G + + FFP Sbjct: 1011 IELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064 >gi|227875268|ref|ZP_03993410.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844173|gb|EEJ54340.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1273 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 345/1074 (32%), Positives = 549/1074 (51%), Gaps = 52/1074 (4%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + + S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF Sbjct: 1 MEGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAA 59 Query: 62 ACAAGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A G++PIIG + + + + + LL T EG Sbjct: 60 AVKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEG 119 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 L L S + Q + R+ LQ GL+ +G SG + A Sbjct: 120 MHNLFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEAL 178 Query: 169 KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + + +FG + Y+ L H +R +++LA + PL+ATN+S ++++ED E Sbjct: 179 RTAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDRE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFIL 285 D ++ + ++ ++R R Y S M +F DLP+A +NT+ +A +C Sbjct: 239 IQDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKF 298 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 F+ K + EE+ + GL R QG + R+R D+E+ Sbjct: 299 STVD-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEV 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +I +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFE Sbjct: 352 GIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 RFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARIS 471 Query: 466 QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQ 516 +S + L K P + + FR+ + + ++ Sbjct: 472 GAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLAS 531 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EG+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGL Sbjct: 532 GVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGL 591 Query: 577 KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 K LT++ +LD + DL +P DD TY LL++ TLG+FQL+ GMR L+ + Sbjct: 592 KNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQL 651 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVI 689 +P +DI ALV+LYRPGP+ N I IHP + LK T G+I Sbjct: 652 RPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLI 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ + Sbjct: 712 IYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + Sbjct: 772 WDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868 R+ I+++PP VN F I + LA+I+ VG I++ + S +DF Sbjct: 831 RRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDF 890 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 891 LNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFA 950 Query: 929 HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G D + + + E+++LG Y S HPL + +LR++ Sbjct: 951 SLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQI 1010 Query: 984 EESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 E + +R+A ++ S + K +++ G + + FFP Sbjct: 1011 IELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064 >gi|311063925|ref|YP_003970650.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010] gi|310866244|gb|ADP35613.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium bifidum PRL2010] Length = 1192 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 345/1080 (31%), Positives = 552/1080 (51%), Gaps = 61/1080 (5%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + + + FV L H+ YSLL+GA + +++ ++ PA+ ITD N+ A E + Sbjct: 1 MERMAGN--FVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRA 58 Query: 62 ACAAGIQPIIGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLV 103 A +G++PIIG + + + + + + + Sbjct: 59 AVDSGVKPIIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWA 118 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 EG LI+ S L + + R+ L ++G+I +G SG I Sbjct: 119 ENDEGLVNLIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQ 177 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + F+ +FG D Y+ L H + ++ +A PL+ATN+S ++ Sbjct: 178 FDEALRAAGEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVM 237 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 E D +A D ++ + + +R + +Y+K+ EM +F D P+A +NT+EIA R Sbjct: 238 EADKDAQDAMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAER 297 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ I H + +E + K GLE R G + ++ Sbjct: 298 CNVIFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPMEVLKQ 349 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ Sbjct: 350 ADYECGVICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKH 409 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D Sbjct: 410 GLIFERFLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKD 469 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510 R + P+ R+ + +P +S+ I D S +RE +DP V R Sbjct: 470 SARIMGFPFEMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKR 529 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + E ++ +EGL R HA ++G P++ P+ + T F E GL+K Sbjct: 530 ITEEAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVK 588 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L + +D + IP DD ETY LL+ TLG+FQL+S GMR Sbjct: 589 MDFLGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMR 648 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE--- 684 L+ ++PD DI AL++LYRPGP+ Y RKNG +KI IHP +D LK+ Sbjct: 649 SLLKTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLD 708 Query: 685 -TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T G+IIYQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 709 ETYGLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSE 768 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A I+E+L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N K Sbjct: 769 EAAEAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTA 828 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG + I+ Sbjct: 829 LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGK 888 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV LNRR++ESL+ AGA D +R L ++ +++ + Sbjct: 889 YVNFMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAE 948 Query: 922 KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F+ + + +D + + + + + E+ +LG Y S HPL + +L Sbjct: 949 GQFDLFSDTEDSSADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLA 1008 Query: 977 KMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 M + G + LA ++ + ++ ++KG+ VT + + FF Sbjct: 1009 GMREMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1068 >gi|299136806|ref|ZP_07029989.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] gi|298601321|gb|EFI57476.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] Length = 1177 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 399/1060 (37%), Positives = 602/1060 (56%), Gaps = 42/1060 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL +H+ YSLL+GA ++ + + Q + A+TD N++ A+ F + Sbjct: 2 AAEFTHLHLHTDYSLLDGACDVDKLAKHLVKIGQTSAAMTDHGNIYGAVHFFDAMKKKNL 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC+L + +D+ + P +++L GY+ L+ L S L + Sbjct: 62 KPILGCELYVCKEDDHRREFAN--PDSKYNHMLVLAENEAGYRNLVRLTSEAALHG-FYK 118 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186 R+ ++L + EGLI +G +G + + + A+K ++ +FG ++ + Sbjct: 119 KPRVSKNFLAK-HVEGLIGFSGCLAGEVSQHLMEGDYEKAKKAAGDYETMFGRGNFFLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H D+ + +L ++PL+ATN+S ++ ++D AH+VL+ V + ++ R Sbjct: 178 QDHGLEPDKAVTEAMFRLEKDLDIPLIATNDSHYIEDQDSRAHEVLLCVQTAGSMNDPKR 237 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + T + Y+K+ EM +FS PE T++ RC L+ P+F E +D+ Sbjct: 238 FKFDTQEFYIKSADEMHRLFSHAPEVCTRTMQFPERCQLELKAVKNPFPKFDVPEGEDLD 297 Query: 305 KEEENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E R E V+ + DY RL+ E++ I +MKF GYF+IV D Sbjct: 298 SYFEQVCRAGWRHRRETAVKHLEDRGILRKSIADYEARLNREIDCIKQMKFPGYFMIVWD 357 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI++AK+ +IPVGPGRGS AGS+ AY + ITD+DPL+ LLFERFLNP+R+SMPD DIDF Sbjct: 358 FIRYAKQQSIPVGPGRGSAAGSLVAYVMEITDVDPLQNDLLFERFLNPERVSMPDVDIDF 417 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI+YV+ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ KLIP Sbjct: 418 CMNRRGEVIKYVREKYGEDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKLIPAT 477 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + + D +A P + L++ + +LEGL R A HAAG+VI +PL++L Sbjct: 478 IGITIEQA-LKDSPPLAQAYED-PKIRELIDTALRLEGLVRGAGVHAAGVVIAPQPLTEL 535 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ R + D VT ++MK +EK GL+K DFLGL TLT++ L + RGV VD++ I Sbjct: 536 VPVTR-TKDDAIVTSYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKLIKSNRGVDVDMATI 594 Query: 602 PFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658 P DD ETY + T G+FQ ES GMR L +P +ED+ AL +LYRPGPI I Sbjct: 595 PLDDAETYEKVYHRALTSGVFQFESGGMRDVLRRYKPTTVEDLTALNALYRPGPIQGGMI 654 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + RK G+ + + P ++P+LKET GVI+YQEQVMQI+ ++GYSL AD+LRRAMG Sbjct: 655 DDFIERKWGRRAVEYLFPELEPILKETLGVIVYQEQVMQISSAIAGYSLGGADLLRRAMG 714 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ+ F++GA++ K A +F+L+ +FA YGFNKSH+AAYA+++Y TAW Sbjct: 715 KKNAEEMAKQRVLFMAGAAERKFHKDRAGQLFDLMEQFAGYGFNKSHSAAYALLAYHTAW 774 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +KTHYPVEF+AA +T E E + K+ + R+ NI ++PP V +F + I + Sbjct: 775 LKTHYPVEFMAALLTSETSKPENVVKYIGECREINIPVVPPDVQISAANFTPAGDSIRFG 834 Query: 839 LAAIKGVGTTTARHIMEASAD------KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 LAAIK VG I++A + + F SL +FC +VD + +N+RVLESL AGALD Sbjct: 835 LAAIKNVGHNAIDSIIKAREELQAAGKQGFVSLWEFCDKVDLRLMNKRVLESLCKAGALD 894 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH------EKGTFSDKITLEKFSVE 946 FG R ++ +LD + AQ +++ +F + + TL Sbjct: 895 AFGP-RARVFAALDKAMERAQKSQRDAAAGQSGLFGMFDDPGPSSASTGGEETLPPAPDW 953 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------------RGNN 994 + R +NE+ VLGF+ SGHP+D Y+ LR M + + +GN Sbjct: 954 DEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQVFRRGQAEQGNE 1013 Query: 995 IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 I++A ++ + K+++ G + + + FP Sbjct: 1014 IQIAGVITGLKVAKSKRSGEMYAQAYLEDTVGKIDLIAFP 1053 >gi|328950095|ref|YP_004367430.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM 14884] gi|328450419|gb|AEB11320.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM 14884] Length = 1224 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 418/1092 (38%), Positives = 605/1092 (55%), Gaps = 83/1092 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65 F HL H+ YSLL+GA L ++++ + PA+A+TD NL A++F +KA AA Sbjct: 3 FAHLHQHTQYSLLDGAAKLQDLIEWVKQVTPDE---PALAMTDHGNLHGAVDFYKKATAA 59 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIG + + + GK + +L GYQ L L SR YL + Sbjct: 60 GVKPIIGYEAYVAAESRFDR-KMGKGLDGGYFHLTILAENFTGYQNLCRLASRAYL-EGF 117 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 RI L+E EGLI+L+G I + + +AE RL + ++FGDR ++ Sbjct: 118 YMKPRIDRELLRE-HNEGLIVLSGCLGAEIPQFILQDRLDLAEDRLKEYLEIFGDRYFIE 176 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H D+ + + + A + + +VATN+ ++ +ED EAH VL+A+ + + Sbjct: 177 IQDHGLPEDKKVNAVLKEFARKYGIGMVATNDGHYVKKEDAEAHAVLLAIQSKSTWDDPN 236 Query: 245 RPRVTPDHYLKNRSEMVSI----FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R D + E + E +NT+EIARRC+ L V ++ R + Sbjct: 237 RWRFPCDEFYVKSPEAMRAALPAEEWGDEIFDNTMEIARRCNVELPVGDKMVYRI-PRYP 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------------------------AQD 336 ++E LR GL R Y ++ Sbjct: 296 LPEGRDENQYLRELTFRGLLERYPDRVTEALYREFLKKLGRTPHGDAQALAAEIALLPKE 355 Query: 337 YRQ----------------------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 R+ R ++EL+VI +M F GYFLIV D+I WAK I V Sbjct: 356 LREKAQAFLPKLEEGLEWDGWAILARAEYELSVIEQMGFPGYFLIVQDYINWAKNQGISV 415 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGS AGS+ AYA+ IT+IDPL F+LLFERFLNP R++MPD D DF RRDEVI+YV Sbjct: 416 GPGRGSAAGSLVAYAIRITNIDPLEFNLLFERFLNPARVTMPDIDTDFSDVRRDEVIQYV 475 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494 + +YG ++VAQI TFG++ +KAAL+DV R MP+ + + L KLIP P+ L A+ Sbjct: 476 RERYGEDKVAQIATFGTMASKAALKDVARVFGMPHKRAEELAKLIPVQFGKPMPLAKAAE 535 Query: 495 D-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 R+A D V R+ E++++LEGL RHAS HAAG+VI PL+ LVP+ RD Sbjct: 536 TIPEIRQAMEQDEQVRRVFEVARRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDTSGTG 595 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612 VTQ++M +E GL+K DFLGL+TL+ L+++ + + +GV++D IP DD +T+ LL Sbjct: 596 VVTQYDMGSVEALGLLKMDFLGLRTLSFLEEAKRIIRESKGVELDYDRIPLDDAKTFELL 655 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 T GIFQLESSGM + G++P I+DIIALVSLYRPGP+++I Y R +G+E + Sbjct: 656 GRGETKGIFQLESSGMSSTVRGLKPRRIQDIIALVSLYRPGPMEHIPTYIRRHHGREPVT 715 Query: 673 SIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 ++P+L+ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EEM K Sbjct: 716 YAEFPHAAKYLEPILRETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKVEEMQK 775 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + RF+ GA++ GI + A +F++L FA+YGFNKSHAAAY+++SYQTA++K +YPVEF Sbjct: 776 HRVRFVKGAAERGIPEDEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKANYPVEF 835 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +AA +T+E N +K+ ++ +DAR I ++PP +N DF+V I + L+A+K VG Sbjct: 836 MAALLTVERRNSDKVAEYIRDARAMGIAVLPPDINRSGFDFRVVGQEILFGLSAVKNVGE 895 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 RHI+E PF SL DF RVD ++NRR ESL+ AGA D FG R ++L +L+ Sbjct: 896 GAVRHILEERDRGGPFKSLADFLKRVDLHQVNRRAAESLIKAGAFDAFGE-RGRMLAALE 954 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ K+AQ ++++ +FA + + E+ L Y +GH Sbjct: 955 SLMKWAQAEKESQAAGMMGLFAGASTEPPLPEVPPL----DEVTKLRYEKEALSIYVTGH 1010 Query: 967 PLDVYKPILRKMGIKGYEES----VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTF 1020 PL Y+ LR+ EE G R LA MV S +K T+ G + Sbjct: 1011 PLLNYEG-LREAATCTIEELPRWYAEQGNGRRARALLAGMVESVVRKPTKSGGMMARFNL 1069 Query: 1021 SEPAKEYEANFF 1032 ++ E F Sbjct: 1070 ADETGAVEVVVF 1081 >gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243] gi|237811495|ref|YP_002895946.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346] gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655] gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13] gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a] gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei K96243] gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13] gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655] gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346] gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a] Length = 1174 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|18251957|gb|AAL66178.1|AF459434_1 DNA polymerase III alpha subunit [Saccharomonospora phage PIS 136] Length = 1206 Score = 740 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 528/1067 (49%), Gaps = 54/1067 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +S+L+GA + + D+ PA+A+TD N+F A EF Q++ GI+P Sbjct: 68 SFVHLHVHTEFSMLDGAAKMKPLFDEATRLGMPAVAMTDHGNMFGAYEFFQQSKKTGIKP 127 Query: 70 IIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQRL 112 IIG + + + + + +L A G + L Sbjct: 128 IIGIEAYVAPESRHHKKPVFWGHHGQRGADEFGEGGDVSGAGAYTHMTMLARNATGLRNL 187 Query: 113 IELV-SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L SR + K R+ + E EG+I TG SG + + A + Sbjct: 188 FKLSYSRAWRATTAK--PRMDRDLIAE-HAEGIIATTGCPSGEVQTRLRLGQPKEALQAA 244 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 F+ +FG + ++ L H +R ++ +A L VATN+S +++++ +AH Sbjct: 245 SDFRDIFGPENFFLELMDHGLPIERSVREGLLDIAKQLGLRPVATNDSHYVTQDQADAHS 304 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V ++ +R + D Y + + + D + Sbjct: 305 ALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMRAYWDTEVPGAADNTLLIASMVESYDDV 364 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + + K +E LR + + R G Q YR +L++EL VI Sbjct: 365 FAPTNRMPQAKIVPGKTDEQVLREEIEQFIPTRFPDGM------PQKYRDQLEWELEVII 418 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ YFL+V D ++WAK N I VGPGRGS AG++ +Y L I DIDPL+ L+FERFLN Sbjct: 419 GKGYASYFLVVGDLVRWAKNNGIRVGPGRGSAAGALLSYILHIIDIDPLKHGLIFERFLN 478 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R S PD DIDF + RRDEVI Y +NKYG E A++IT+G+++ KAA +D R Q Sbjct: 479 PERESPPDIDIDFDERRRDEVIEYAKNKYGSEYFAKVITYGTIKTKAAFKDAARVHLGQA 538 Query: 468 PYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 +S DR K +P A + A+ + R +DP V ++ + ++ L Sbjct: 539 GFSVADRFSKALPPPVAAKDIPLSGIMDPEHERYAEAAEVRSLIESDPEVSKIFDTARGL 598 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +I PL ++P+++ +T ++ E GL+K D LGL Sbjct: 599 EGLIRNAGVHACAHIISREPLLDVLPLWQRE-DGAIITGWDGPQCEGVGLLKIDILGLVN 657 Query: 579 LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 +T + + + GV++D +P DD T+ +L +LG+FQLE GM+ L+ MQP Sbjct: 658 MTTIDDTARMVKANHGVEIDPLALPMDDATTFDMLGRGESLGVFQLEGGGMQALLKRMQP 717 Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691 EDI+A V+LYRPGP+D + Y +RKNG++K+ IHP ++ L ET G+I+Y Sbjct: 718 TTFEDIVACVALYRPGPMDVDAHLHYADRKNGRQKVSPIHPELEEPLAEILSETYGLIVY 777 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+MQIAQ ++ Y+L +AD LRRAMGKK KE ++K+ F G NG S +++ Sbjct: 778 QEQIMQIAQKVANYTLGQADTLRRAMGKKKKEVLEKEFAVFEEGMKANGFSGEAIKALWD 837 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAAAY +I+Y TA++K +YP E++AA +T D +K + + R+ Sbjct: 838 TILPFAGYAFNKSHAAAYGLITYWTAYLKANYPAEYMAALLTANADKKDKSAVYLAECRR 897 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870 ++++PP VN V F D I + L AI+ VG A I+ + F DF + Sbjct: 898 MGLKVLPPDVNDSAVQFSATDGNIRFGLGAIRNVGAGVAETIIRDREKEGRFTGFADFLT 957 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 + ++RV+ESL+ AGA D G++R L ++ + ++K + ++F Sbjct: 958 KASPSVCSKRVVESLIKAGAFDDLGHTRKALFIVHEDAVEVMSALKKQQAAGQFDLFGAA 1017 Query: 931 KGTFSDKITLEKF----SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + L + E+ +LG Y + HPLD + +LRK K Sbjct: 1018 PQPMEESSPLAHLKYDPEEWPPKILLSFEREMLGLYVTAHPLDGAEHLLRKWAPKPIATL 1077 Query: 987 V-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V + I ++ +V S +++ +KG T + E FF Sbjct: 1078 VHDAPKEGEITISGLVTSVERRLNKKGEPWAICTIEDLDASIEVLFF 1124 >gi|269956096|ref|YP_003325885.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM 15894] gi|269304777|gb|ACZ30327.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM 15894] Length = 1181 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 348/1071 (32%), Positives = 543/1071 (50%), Gaps = 54/1071 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VHS +S+L+GA + ++D++AA Q A+AITD LF A EF + A Sbjct: 1 MPATDEFVHLHVHSEFSMLDGAARIGELVDEVAAQGQKAVAITDHGYLFGAFEFWKTATN 60 Query: 65 AGIQPIIGCQLDIDMQD---------------NLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 G++PIIG + + + + + + L G Sbjct: 61 KGVKPIIGVEAYVTPGTSRFDQKRQLYGQPLPDGRPDPDDVSARGAYTHMTLWARDNVGM 120 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L S L Q + R+ LQ + GL TG SG I + A + Sbjct: 121 HNLFRASSLASLEGQMGKWPRMDRDLLQRY-SPGLTATTGCPSGEIQTRLRLGQWEEALR 179 Query: 170 RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + LFG + YV L H + +++LA P+VATN+ ++ E D + Sbjct: 180 AAGELQDLFGREHFYVELMDHGLEIETRVTKDLLRLAQEIGAPIVATNDLHYVKEADATS 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 + L+A+ + + +R + +Y+K+ +EM +F +LPEA+ NT+ IA C Sbjct: 240 QEALLAINSGSTLDDPNRFKFDGTGYYVKSSAEMARLFRELPEAISNTLLIAESCEVSFD 299 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 A +P F + +D E + + GL R G D R R D+E+ Sbjct: 300 TQANYMPHFPVPDGED----EISWFVKEVENGLRRRYPDG------IPDDVRTRADYEVG 349 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +M F GYFLIVADFI W+K+N I VGPGRGS AGS+ AYA+ IT++DP+ + LLFER Sbjct: 350 VIIQMGFPGYFLIVADFINWSKRNGIRVGPGRGSAAGSMVAYAMGITELDPIPYDLLFER 409 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPD D+DF + RR E IRYV KYG +RVAQI+T+G+++AK A++D R L Sbjct: 410 FLNPERVSMPDVDVDFDERRRGEAIRYVTEKYGDDRVAQIVTYGTIKAKQAIKDSARLLG 469 Query: 467 MPYSQVDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517 P++ ++L K +P + A+ + FR+ DP R++E+++ Sbjct: 470 QPFAMGEKLTKAMPPAVMGKDIPLSGIFDPKHPRYAEAAEFRQVHDVDPEAQRVVELARG 529 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAAG+++ PL ++P+ + + +TQF+ E GLIK DFLGL+ Sbjct: 530 IEGLKRQWGVHAAGVIMSSEPLIDIIPIMKRPQDGAVITQFDYPTSEGLGLIKMDFLGLR 589 Query: 578 TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT+L +L+ + V++ + DD TY LL TLG+FQL+ MR L M+ Sbjct: 590 NLTILDDALENIVGNGKEPVEIEKVGLDDPTTYELLARGDTLGVFQLDGGPMRALLRQMR 649 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPM----LKETQGVII 690 PD ED+ A+++LYRPGP+ N ++ IHP + L T G+I+ Sbjct: 650 PDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQQNTPIHPELAEPLAEVLDTTYGLIV 709 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F +G + G S ++ Sbjct: 710 YQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEILDKEFVPFQAGMRERGYSDAAIQAVW 769 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNK+H+A Y ++SY TA++K +YP E++AA + ++ +K+ + + R Sbjct: 770 DVLVPFAGYAFNKAHSAGYGLVSYWTAYLKANYPAEYMAALLQSTREDKDKLALYLNECR 829 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869 + I ++PP VN F + + L+ ++ VG I+ + + S DF Sbjct: 830 RMGITVLPPDVNVSAAKFTAVGKDVRFGLSGVRNVGANVVDAIVRTREEKGAYTSFTDFL 889 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V + N+R +ESL+ AGA D SR LL + V++ ++FA Sbjct: 890 DKVPAVVCNKRTIESLIKAGAFDSLEASRRALLVVHEQAVDSVITVKRKEAEGQFDLFAG 949 Query: 930 EKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 G D + + + + E+ +LG Y S HPL + +L + Sbjct: 950 FGGDDDDAGMSFSVDVPDLPDWDKKQKLAFEREMLGLYVSDHPLSGLEHVLTRAADTSIA 1009 Query: 985 ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + +A ++ S Q+K ++ G+ VT + E FF Sbjct: 1010 TLMGDEGRPENSTVTVAGLITSLQRKMSKNGNPWAAVTVEDLEGSVEVMFF 1060 >gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210] Length = 1109 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC 13177] gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112] Length = 1104 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|320457804|dbj|BAJ68425.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1177 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 342/1061 (32%), Positives = 538/1061 (50%), Gaps = 52/1061 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L H+ YSLL+GA + ++ + A PA+ ITD N+ A E A G++PIIG Sbjct: 3 LHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPIIGI 62 Query: 74 QLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 + + + + + + + EG LI+ S L Sbjct: 63 EAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVANLE 122 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + + R+ L ++G+I +G SG I A + F+ +FG D Sbjct: 123 GRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGKDN 181 Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ L H + ++ +A PL+ATN+S ++ ED +A D ++ + + + Sbjct: 182 FFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSGSRL 241 Query: 241 SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 242 DDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPKFPC 301 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + +E + K GLE R G D ++ D+E VI +M+F GYFL+ Sbjct: 302 PEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGYFLV 353 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+PD D Sbjct: 354 VADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDID 413 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ K + Sbjct: 414 VDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTKAL 473 Query: 480 PN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 P +SL I D + FRE +DP R+ E ++ +EGL R HA Sbjct: 474 PPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTGVHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 ++G P++ P+ + T F E GL+K DFLGL LT++ +L + Sbjct: 534 CATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI 592 Query: 590 AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 +D + IP DD ETY L++ TLG+FQL+S GMR L+ ++PD DI AL++ Sbjct: 593 VANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA 652 Query: 649 LYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLL 702 LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A++L Sbjct: 653 LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL 712 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 +GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ + ++++L F+ Y FN Sbjct: 713 AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN 772 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 K+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P VN Sbjct: 773 KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN 832 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRR 880 ++ + + + L AI+ VG I+ F + DF RV LNRR Sbjct: 833 ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR 892 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--- 937 ++ESL+ AGA D +R L + +++ + ++F+ + ++ Sbjct: 893 LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD 952 Query: 938 --ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---- 991 +T+ + + E+ +LG Y S HPL + IL + V R Sbjct: 953 ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRARTMGE 1012 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA +V + ++ ++KG+ VT + + FF Sbjct: 1013 GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1053 >gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91] Length = 1107 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|224282597|ref|ZP_03645919.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] gi|310287058|ref|YP_003938316.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17] gi|313139756|ref|ZP_07801949.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] gi|309250994|gb|ADO52742.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17] gi|313132266|gb|EFR49883.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB 41171] Length = 1189 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 345/1071 (32%), Positives = 549/1071 (51%), Gaps = 59/1071 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + +++ ++ PA+ ITD N+ A E + A +G++PI Sbjct: 5 FVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKPI 64 Query: 71 IGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 IG + + + + + + + EG L Sbjct: 65 IGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVNL 124 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 I+ S L + + R+ L ++G+I +G SG I A + Sbjct: 125 IKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAG 183 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG D Y+ L H + ++ +A PL+ATN+S ++ E D +A D Sbjct: 184 EFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQDA 243 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 ++ + + +R + +Y+K+ EM +F D P+A +NT+EIA RC+ I H Sbjct: 244 MLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDHE 303 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + +E + K GLE R G + ++ D+E VI Sbjct: 304 DGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPMEVLKQADYECGVIC 355 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ L+FERFLN Sbjct: 356 QMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFERFLN 415 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D R + P+ Sbjct: 416 PERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGFPF 475 Query: 470 SQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 R+ + +P +S+ I D S +RE +DP V R+ E ++ +E Sbjct: 476 EMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEEAKGIE 535 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HA ++G P++ P+ + T F E GL+K DFLGL L Sbjct: 536 GLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNL 594 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T+++ +L + +D + IP DD ETY LL+ TLG+FQL+S GMR L+ ++PD Sbjct: 595 TVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLLKTLKPD 654 Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 DI AL++LYRPGP+ Y RKNG +KI IHP +D LK+ T G+IIYQ Sbjct: 655 NFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETYGLIIYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A I+E+ Sbjct: 715 EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAAEAIWEI 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N K + +AR+ Sbjct: 775 LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYLGEARRM 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCS 870 IQ++ P VN ++ + + + L AI+ VG + I+ + + DF Sbjct: 835 GIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVNFMDFIR 894 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RV LNRR++ESL+ AGA D +R L ++ +++ + ++F+ Sbjct: 895 RVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQFDLFSDT 954 Query: 931 KGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + + +D + + + + + E+ +LG Y S HPL + +L M Sbjct: 955 EDSGADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMREMSIAH 1014 Query: 986 SVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + LA ++ + ++ ++KG+ VT + + FF Sbjct: 1015 LIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065 >gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98] Length = 1103 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a] gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b] gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e] gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a] gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e] gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b] Length = 1174 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR] Length = 1142 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 404/1031 (39%), Positives = 588/1031 (57%), Gaps = 37/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + I + +A PA+AITD N + + KA G++P+IGC + Sbjct: 1 MIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLKPLIGCDFWV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q P + + L EGYQ++ +L+S+ YL K I WL+E Sbjct: 57 ------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE-HN 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200 EG+I+L+G G + +A + L +++ F DR Y+ L R + + Sbjct: 110 EGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELVRTGRPQEENYLHKA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V LA LP+VATN +FL EED++AH++ +A+ + K RP+ +P YL++ E Sbjct: 170 VALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQYLRSSEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+PEA+ENTVEIA+RC+ +++ + E L + GL Sbjct: 230 MSELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPKFPTGDLTTEEFLIKVSEEGL 284 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL A + +Y +RL EL VI M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 EERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC DRRDEVI +V + Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG E V+QIITFG++ AKAA+RDVGR L PY VDR+ KLIP DP + +A + Sbjct: 405 LYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPGMTL-AKAFEIEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + A D V ++++++ LEG+ R+A HA G+VI ++ P+Y D + PVT Sbjct: 464 QLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGNNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611 QF+ +E AGL+KFDFLGL+TLT++Q ++D + +R +D++ I D + L Sbjct: 524 QFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPACFKL 583 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664 L T +FQLES GM++ ++ + PD EDIIALV+L+RPGP+ + +V + Sbjct: 584 LKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + H + P+L+ T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EE Sbjct: 644 EISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEE 703 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+E F GA++N I +A IF+L+ KFA YGFNKSH+AAYA++SYQT WMKTH+P Sbjct: 704 MAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHFP 763 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA M+ +MDN +KI + + + ++PP VN F V + R+ Y + AIK Sbjct: 764 AEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTVDEQQRVVYGIGAIK 823 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I++A PF L DFC RVD K++N+R+L+ L+ AGA+D G R L+ Sbjct: 824 GVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMDNLGPHRASLM 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 +L+ + A+ ++F + + + +V E E+ LG Sbjct: 884 ATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWSEAVWLEGERDTLGL 943 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y +GHP++ ++ L+ T + +I +A +V+ + ++G R VT Sbjct: 944 YLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKRGQRFAIVTLD 1003 Query: 1022 EPAKEYEANFF 1032 + + F Sbjct: 1004 DKTARMDVRLF 1014 >gi|313680738|ref|YP_004058477.1| DNA polymerase III subunit alpha [Oceanithermus profundus DSM 14977] gi|313153453|gb|ADR37304.1| DNA polymerase III, alpha subunit [Oceanithermus profundus DSM 14977] Length = 1222 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 403/1087 (37%), Positives = 590/1087 (54%), Gaps = 75/1087 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAA---DQQPAIAITDTNNLFSALEFSQKACAAGI 67 F HL H+ +SLL+GA L+ ++ + D PA+A TD NLF A++F +KA AAG+ Sbjct: 3 FAHLHQHTQFSLLDGAAKLDELIQWVKQTTPDD-PALATTDHGNLFGAVQFYKKATAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PIIG + + + T + K + LL +GYQ L+ L SR YL + Sbjct: 62 KPIIGYEAYVAAESRFDRTMR-KGLDGGYFHLTLLAKDFKGYQNLVRLASRAYL-EGFYM 119 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI L+E EG+I L+G I + + +AE+RL + ++FGDR ++ +Q Sbjct: 120 KPRIDREILRE-HNEGIIALSGCLGAEIPQFILADREDLAEERLNEYLEIFGDRYFIEIQ 178 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + + + A + L +VATN+ ++ +ED AH+VL+A+ ++ +DR Sbjct: 179 DHGLEEQKKVNAVLREFAQKYGLGMVATNDGHYVKQEDARAHEVLLAIQSKATLADEDRW 238 Query: 247 RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + D Y+K EM D P+ + + + + I + + Sbjct: 239 KFPCDEFYVKTPEEMKKALPDWPDEIFSNSAEIAAMCNVELPVGDKMTYRIPRYPLPEGR 298 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHA------------------------------- 334 +E LR GL R Y A Sbjct: 299 DENQYLRELTFKGLLERYPDRVNPALYRAYLTRLEIEPAEDEEDLILQLARLDRKARERV 358 Query: 335 ---QDYR-----------QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 D R R ++EL I +M F GY LIV D+I WAK + I VGPGRGS Sbjct: 359 DFFPDVRNVQEWDGWATLARAEYELGTIEQMGFPGYLLIVQDYINWAKNHGISVGPGRGS 418 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 AGS+ AYA+ IT+IDPL F LLFERFLNP R+SMPD D DF RRDEVI YV+ +YG Sbjct: 419 AAGSLVAYAIRITNIDPLEFGLLFERFLNPARVSMPDIDTDFSDVRRDEVIDYVRERYGE 478 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFR 499 ++VAQI TFG+L +KAAL+DV R + Y + ++L KLIP P+ +A+ + Sbjct: 479 DKVAQIATFGTLASKAALKDVARVYGLEYKRAEQLAKLIPVQFGKPLPLARAMEQIPELK 538 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 A D +V +LEI+Q+LEGL RHAS HAAG+VI D PL+ LVP+ RD R D VTQ++ Sbjct: 539 AAMRQDETVREVLEIAQRLEGLNRHASVHAAGVVIADEPLTNLVPLMRDTRGDGVVTQYD 598 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618 M +E GL+K DFLGL+TL+ L ++ + + D +P DD +T+ +L T Sbjct: 599 MGSVEALGLLKMDFLGLRTLSFLDEAKRIVKESAGVELDYDNLPLDDPKTFEMLGRGDTK 658 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH--- 675 G+FQLE +GM ++ +P+ + DIIA+VSLYRPGP+DNI Y R++G+E + Sbjct: 659 GVFQLEGTGMTNTVKAFKPERLHDIIAIVSLYRPGPMDNIPTYLRRRHGQEPVSYAEFPH 718 Query: 676 --PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 +++P+L ET G+ +YQEQ+MQIA ++GY+L EAD+LRRAMGKK EE+ ++RFI Sbjct: 719 AAEMLEPILAETYGIPVYQEQIMQIASAVAGYTLGEADLLRRAMGKKKVEELKAHRDRFI 778 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 +GA K G+ A IF+LL FA+YGFNKSHAAAY++ISYQTA++K H+PVEF+AA +T Sbjct: 779 TGAEKRGVPPDEASRIFDLLEAFANYGFNKSHAAAYSLISYQTAYVKAHFPVEFMAALLT 838 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 +E N +K+ ++ +DA I ++PP +N DF+V I + L+A+K VG I Sbjct: 839 VERRNSDKVAEYIRDAEAGGIHVLPPDINRSGADFRVVGREILFGLSAVKNVGEGAVESI 898 Query: 854 M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + E PF SL DF RVD +N+R LESL+ AGA D FG R Q+L +++ + K+A Sbjct: 899 LNEREKGGPFRSLPDFLRRVDLHHVNKRALESLIKAGAFDAFGE-RGQMLDAMEGLLKWA 957 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++ +F + L + + +R E+ LG Y +GHPL+ Y Sbjct: 958 AAEQQKAAGGLTGLFDD----GLTEPPLPETAPLEEVIRLRFEKEALGIYVTGHPLEHY- 1012 Query: 973 PILRKMGIKGYEESVATIR-----GNNIRL--AAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 P L + E + +R+ A MV ++ TR G + ++ + Sbjct: 1013 PGLAEAATCQVTELARWYEQNSGSKSRVRVLLAGMVEQITRRSTRSGGMMARFNLADASG 1072 Query: 1026 EYEANFF 1032 E F Sbjct: 1073 ALEVVVF 1079 >gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1] gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1] Length = 1190 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 413/1058 (39%), Positives = 599/1058 (56%), Gaps = 57/1058 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++H+ +S+++G ++ + + D QPA+AITD +NLF A++F ++A G++ Sbjct: 9 PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 P++G ++ I+ + T I+LL +GY L E+++R + + K Sbjct: 69 PVLGAEVSIEPE----------TAGGPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNV 118 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 WLQE+G + LI L+G +GP+ +AF A + L +F R Y+ LQR Sbjct: 119 PLCTWEWLQELGGD-LIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQR 177 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 R D + VQLA LP+VAT + FL+ +DYEAH+ + +A +++ R Sbjct: 178 AGRPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVR 237 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS L + P LP F I Sbjct: 238 RFTREQYFKSSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPI--- 294 Query: 307 EENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E R + GLE L + Y +RL+FEL I +M F GYFLIV DF Sbjct: 295 -EEYFRYASFEGLEERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDF 353 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC Sbjct: 354 IQWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFC 413 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q RD VI YV++KYG V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 414 QSNRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 473 Query: 484 AHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + A+ + E + V ++E++QKLEG+ R+ HA Sbjct: 474 GMSYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 533 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 534 GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 593 Query: 590 AQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 +R IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL Sbjct: 594 MKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIAL 653 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYS Sbjct: 654 NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYS 713 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + +E F GA++ GI + A +F+L+ KFA YGFNKSHA Sbjct: 714 LGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHA 773 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP VN Sbjct: 774 AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMY 833 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSK 875 F+ V D I Y L A+KG G I+ A PF SL DFC+RVD Sbjct: 834 RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRT 893 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEK 931 +LN+R LE+L+ AGA D +R L+ S+D +A + N +F Sbjct: 894 RLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIAN--ANQGGLFDMMGDDAH 951 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 G+ + L + R E+ +GFY SGH D + +R+ EE + Sbjct: 952 GSSTQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPIEELADSRE 1011 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +A +V + ++G R+ + + EA Sbjct: 1012 PQ--IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1046 >gi|289642708|ref|ZP_06474847.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca glomerata] gi|289507451|gb|EFD28411.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca glomerata] Length = 1187 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 322/1073 (30%), Positives = 541/1073 (50%), Gaps = 52/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL VH+ YS+L+GA + + + A PA+ +TD N+F + EF Q A Sbjct: 1 MSKGDSFVHLHVHTEYSMLDGAAKVGLLFAEAARLGMPAVGMTDHGNMFGSYEFHQAAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 AG++PIIG + + + + + +L + ++ Sbjct: 61 AGVKPIIGIEAYVAPEARHHKKPVFWGDGGQRDADPDGEGGDVSGGGAYTHMTMLAANSK 120 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L S L D + R+ + E EG+I TG SG + N A Sbjct: 121 GLRNLFRLSSIASL-DGYYRKPRMDQELIAE-HAEGIIATTGCPSGVVQTRLRLNQFDRA 178 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + T++ +FG + ++ L H +R ++ +A +L +ATN+S +++++ Sbjct: 179 VEAAATYRDIFGPENYFLELMDHGLAIERKVRDGLLDIARRLDLRPLATNDSHYVTKDQA 238 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 ++H L+ V + R R D Y E + D + Sbjct: 239 DSHSALLCVGTGKRLDDPKRFRFDGDGYYLKSPEEMRDMWDGQVPGACDSSLLIAERVQP 298 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + + +++ + LR + G+E R Q+ R+++E+ Sbjct: 299 YDDVFAYVDRMPRFPVPEGEDQLSWLRKEVARGVEHRFGAN------PPQEVLDRVEYEI 352 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VIA M F YFL+VAD ++A++ I VGPGRGS GS+ +Y L +T++DP+ L+FE Sbjct: 353 GVIANMGFPAYFLVVADICRYAREKGIRVGPGRGSATGSMVSYVLGVTELDPIEHRLIFE 412 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R++ PD D+DF + RR ++IRYV +YG +RV QI+TFG+++AKAA++D R L Sbjct: 413 RFLNPERITPPDIDLDFDERRRGDMIRYVTERYGEDRVCQILTFGTIKAKAAIKDSCRVL 472 Query: 466 QMPYSQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQ 516 PY+ D++ K +P D P+S + ++ + R +D V ++++ ++ Sbjct: 473 GYPYALGDKITKAMPPDVFGKGIPLSGILDPAHERYSEAAEVRGLYESDQDVRKIVDTAR 532 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HAAG+++ PL ++P++R +T F E GL+K DFLGL Sbjct: 533 GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDADGAIITGFPFPQCEDMGLLKMDFLGL 592 Query: 577 KTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++ RG+ +DL +P D T+ L+ TLG+FQL+ MR L M Sbjct: 593 RNLTVIDDAIINVRKNRGIDIDLQKLPLADTPTFQLMARGDTLGVFQLDGGPMRSLLRLM 652 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689 P EDI A+++LYRPGP+ ++ + Y +RKNG++ + IH + L++ T ++ Sbjct: 653 APTKFEDIAAVLALYRPGPMAANSHIEYADRKNGRKPVTPIHTELKDRLEDILGETYHLV 712 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM IA+ L+GY+L AD+LRRAMGKK KE +D F++G ++N S A + Sbjct: 713 VYQEQVMTIARELAGYTLGRADLLRRAMGKKKKEVLDANHAEFMAGMAENSYSTEAAQAL 772 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L F+ YGFNKSH A Y V+S+ TA++K ++P E++AA +T D+ +K+ + + Sbjct: 773 WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANFPAEYMAALLTSVGDDKDKMAVYLAEC 832 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 R+ I+++PP VN + F D+ I + L AI+ VG I + + S DF Sbjct: 833 RKMGIRVLPPDVNESTLYFTPVDDDIRFGLGAIRNVGANVVASIAASRERKGDYASFPDF 892 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +V+ N+RV++SL+ AGA D G++R L Q ++ ++N ++F Sbjct: 893 LEKVEIAVCNKRVVDSLIKAGAFDSLGHNRRALSQVHESAIDAVIGTKRNEAFGQFDLFG 952 Query: 929 HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 D+ + S E+ +LG Y S HPL+ + IL + Sbjct: 953 GGGDDEPDESMKIGLGLDLSATEWPRSELLAQEREMLGLYVSSHPLEGTQRILDRNRDTR 1012 Query: 983 YEESVAT-IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033 + + + +++A ++ ++ + G+ VT + E FFP Sbjct: 1013 IIDLLDSGRSEGEVQIAGVIAKIDRRVNKNNGNLWAIVTVEDLDASVEVLFFP 1065 >gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894] Length = 1105 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|295675964|ref|YP_003604488.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] Length = 1196 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 405/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + I WL+ EGL+ L+G G I A + + A++ + K+F Sbjct: 111 NQYRGRAEIEAGWLETGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGF 170 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRYGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + Y + + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTSEQYFRTQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE RL Q + Y QRL+FE I +M F GYF Sbjct: 291 MSL----DDYLVQLSKEGLEKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM + +E F GA++NG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAQHREIFAEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A D F + DFC+RVD + +NRR +E+L+ Sbjct: 827 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDTLHANRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELVDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++VS + Sbjct: 944 PEKRKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|158314206|ref|YP_001506714.1| DNA polymerase III subunit alpha [Frankia sp. EAN1pec] gi|158109611|gb|ABW11808.1| DNA polymerase III, alpha subunit [Frankia sp. EAN1pec] Length = 1178 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 360/1068 (33%), Positives = 564/1068 (52%), Gaps = 50/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA L ++ ++++ PA+AITD ++ A +F ++A A Sbjct: 1 MPNS--FVHLHVHTEYSMLDGAARLKDMFNEVSRQGMPAVAITDHGYMYGAYDFYKQATA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIGC+ + + L + + + + AEG L Sbjct: 59 AGVKPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTIWARNAEGLHNLFR 118 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L SR + + R+ + E GL+ TG SG + A K T+ Sbjct: 119 LNSRASIEGHYIKWPRMDQEIISE-HAAGLMATTGCPSGEVQTRLRLGQYDAALKAAATY 177 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++++G D Y + H +R +V +A ++ V TN+S + E + H L+ Sbjct: 178 QEIYGRDNYYCEIMDHGIEIERRVRDGLVDIARALDMRFVVTNDSHYTYESERTTHAALL 237 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V ++ V+ ++LK+ +M +I D +A + E + + Sbjct: 238 CVQTASTVANPSFQFEGSGYFLKSAEQMYAI--DTSDAWQQGCETTLMIAERVDPAGMFT 295 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + +E+ R + AG+ R G +++R R+++EL VI M Sbjct: 296 KQNLMPRFPVPEGETDESWFRKETWAGMARRFPDGFD------EEHRARVEYELGVILAM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFLNPD Sbjct: 350 GFPSYFLVVADFIMWAKSQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPD 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR +VIRYV K+G +R+AQI+T+G+++AKAA++D R L PY+ Sbjct: 410 RVSMPDIDIDFDERRRGDVIRYVTEKWGDDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAV 469 Query: 472 VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P + ++ R +D V ++++ ++ LEGL Sbjct: 470 GDRITKAMPPAVMGKDIPLGGIFDPKHPRYSEAGEIRGLYESDADVRKVIDTAKGLEGLI 529 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLGL+ LT++ Sbjct: 530 RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCENLGLLKMDFLGLRNLTVM 589 Query: 583 QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ A RG K+DL + +D +Y LL TLG+FQL+ MR L M+PD E Sbjct: 590 DDAVRNVEANRGFKIDLMGLELNDAASYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI A+++LYRPGP+ ++ + Y RKNG+++I IHP + L T G+I+YQEQV Sbjct: 650 DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELAEPLADILDTTHGLIVYQEQV 709 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++GY+L +AD+LRRAMGKK KE +DK+ F G +G S+ ++++L Sbjct: 710 MAIAQKVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKSSGFSEAAIKTLWDILVP 769 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H A Y ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 770 FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++PP VNT D+ GDN I LAAI+ VG I+ K F S DF +VD Sbjct: 830 VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGINVVESIVRNRKTKSRFTSFPDFLDKVD 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L++ + V+K ++FA + Sbjct: 890 AVACNKRTVESLIKAGAFDALGHTRRGLVEKHEQAVDAVMGVKKKNAEGQFDLFAFDGED 949 Query: 934 FSDKIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + +++FS + SV +E+ +LG Y S HPL + IL G Sbjct: 950 AEEDTAPIFGVQEFSDQEWDKSVLLSHEREMLGLYVSDHPLLGVEHILAAKADCGIASLN 1009 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ S Q+K T++G T + E FFP Sbjct: 1010 GGDYPDGSVVTIGGIISSLQRKVTKQGKLWALATVEDLEGGLEVMFFP 1057 >gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9] Length = 1102 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|307700773|ref|ZP_07637798.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16] gi|307613768|gb|EFN93012.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16] Length = 1270 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 345/1071 (32%), Positives = 548/1071 (51%), Gaps = 52/1071 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A Sbjct: 1 MASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVK 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 G++PIIG + + + + + LL T EG Sbjct: 60 TGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 120 LFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEALRTA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + Y+ L H +R +++LA + PL+ATN+S ++++ED E D Sbjct: 179 GELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + ++ ++R R Y S M +F DLP+A +NT+ +A +C Sbjct: 239 AMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F+ K + EE+ + GL R QG + R+R D+E+ +I Sbjct: 299 D-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEVGII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 352 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471 Query: 469 YSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S + L K P + + FR+ + + ++ +E Sbjct: 472 FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK L Sbjct: 532 GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL +P DD TY LL++ TLG+FQL+ GMR L+ ++P Sbjct: 592 TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ N I IHP + LK T G+IIYQ Sbjct: 652 EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++++ Sbjct: 712 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 772 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 830 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871 I+++PP VN F I + LA+I+ VG I++ + S +DF ++ Sbjct: 831 GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 891 VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G D + + + E+++LG Y S HPL + +LR++ E Sbjct: 951 GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010 Query: 987 VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + +R+A ++ S + K +++ G + + FFP Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061 >gi|269978157|ref|ZP_06185107.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1] gi|269933666|gb|EEZ90250.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1] Length = 1270 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 345/1071 (32%), Positives = 548/1071 (51%), Gaps = 52/1071 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + +++K A + Q A+AITD LF A EF A Sbjct: 1 MASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVK 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 G++PIIG + + + + + LL T EG Sbjct: 60 TGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S + Q + R+ LQ GL+ +G SG + A + Sbjct: 120 LFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEALRTA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + Y+ L H +R +++LA + PL+ATN+S ++++ED E D Sbjct: 179 GELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + ++ ++R R Y S M +F DLP+A +NT+ +A +C Sbjct: 239 AMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F+ K + EE+ + GL R QG + R+R D+E+ +I Sbjct: 299 D-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEVGII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F+GYFL+V+D+IQWAK+ I VGPGRGSGAGS+ AYA+ ITD+DPL+ LLFERFL Sbjct: 352 LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR EVI YV KYG +++AQ++T+G+++ K AL+D R Sbjct: 412 NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471 Query: 469 YSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S + L K P + + FR+ + + ++ +E Sbjct: 472 FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + ++ +TQF+ E GL+K DFLGLK L Sbjct: 532 GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL +P DD TY LL++ TLG+FQL+ GMR L+ ++P Sbjct: 592 TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ N I IHP + LK T G+IIYQ Sbjct: 652 EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G NG S+ ++++ Sbjct: 712 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 772 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 830 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871 I+++PP VN F I + LA+I+ VG I++ + S +DF ++ Sbjct: 831 GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R +ESL+ AGA D FG +R L+ + +++ + ++FA Sbjct: 891 VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G D + + + E+++LG Y S HPL + +LR++ E Sbjct: 951 GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010 Query: 987 VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + +R+A ++ S + K +++ G + + FFP Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061 >gi|222111091|ref|YP_002553355.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY] gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY] Length = 1179 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 412/1057 (38%), Positives = 596/1057 (56%), Gaps = 59/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ A D QPA+AITD NNLF A++F ++ G++PI Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ + +VLLV GY L EL++R + + + Sbjct: 62 LGAEIYLEGE-----------AAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WLQE+G +GLI L G +GP+ +A A + L +F R Y+ +QR Sbjct: 111 CTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA LP+VAT+ F + +DYEAH+ + +A +++ R R Sbjct: 170 RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P AL NTVE+A+RC+ L + P LP F E Sbjct: 230 TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGM----TME 285 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+ + GLE L + Y++RL+FEL I +M F GYFLIV DFIQ Sbjct: 286 QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAKKN PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + A+ + E + V ++E++QKLEG+ R+ HA G Sbjct: 466 TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Q Sbjct: 526 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 586 RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP +N Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 825 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A PF SL DFC RVD + Sbjct: 826 FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 885 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +N+R +E+L+ AGA D +R L+ SLD ++A N +F G Sbjct: 886 VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIAN--ANQGGLFDMMGDDAIG 943 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + + L R E+ +GFY SGH D +R+ +E V + Sbjct: 944 SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1003 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +A +V + ++G R+ + + EA Sbjct: 1004 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1037 >gi|221133300|ref|ZP_03559605.1| DNA polymerase III subunit alpha [Glaciecola sp. HTCC2999] Length = 1138 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 404/1027 (39%), Positives = 585/1027 (56%), Gaps = 32/1027 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + +LD+ PA+A+TD N+ ++F +A GI+PIIG + Sbjct: 1 MMDGLNKVKPLLDECVNLSMPALALTDQMNMCGLVKFYSEAHNRGIKPIIGTDFWV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q T P + + LL + GY + L+S+ Y I +WL E Sbjct: 57 ------QDLTQSPNIFRLTLLATNNIGYNNITVLISKAYQRGHVNNRPVIDKAWLAE-HK 109 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQV 200 G+I+L+G + G + A N+ + A + + ++ F DR YV L R + Sbjct: 110 AGIIILSGATRGDLGEALLKNNQKAAHQIVEFYQTHFPDRYYVELIRTGRVNENEYIRAA 169 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 V A + LP+VATN F++ E++ AH++ +++ + RP+ +P Y+++ E Sbjct: 170 VAFAEQYALPVVATNEVCFIASENFAAHEIRVSIHDGYTLEDSRRPKHYSPQQYMRSAEE 229 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 MV +F D+PEA+ NTVEIA+RC+ +Q+ E+ L + GL Sbjct: 230 MVELFDDIPEAITNTVEIAKRCNVTVQLGTYF-----LPNFPTGDLSTEDFLVKVSKEGL 284 Query: 320 EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + + + +Y +RLD EL VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 285 ERRLLKLFPDETDRVEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC DRRDEVI +V Sbjct: 345 GRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAQ 404 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP+DP + +A + Sbjct: 405 MYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTL-AKAFDVEP 463 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R E AD V LL +++ LEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 464 RLGELENADDDVKELLTMARILEGVTRNAGKHAGGVVIAPTQITDFSPLYCDDEGRNPVT 523 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615 QF+ +E AGL+KFDFLGL+TLT++Q ++D + + G +VD++ IP +D ++ LL Sbjct: 524 QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEMTGEEVDITQIPLEDPASFKLLQRA 583 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGK 668 + +FQLES GM+ + ++PDC EDIIALV+L+RPGP+ + +V + Sbjct: 584 ESTAVFQLESRGMKDLINRLRPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISY 643 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 H + +L+ T G+I+YQEQVMQIAQ ++GYSL AD+LRRAMGKK EEM+KQ Sbjct: 644 PDANYQHECLQVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMEKQ 703 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F G+ N I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP F+ Sbjct: 704 RSVFAEGSKNNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAYFM 763 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847 AA M+ +MDN +KI + ++ I I PP +N+ F V +N I Y + AIKGVG Sbjct: 764 AAVMSADMDNTDKIVTLADECQRMGITICPPDLNSGKYKFTVNENQEIVYGIGAIKGVGE 823 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I++A F L DFC+++D KK+N+RVLE LV AGA+D G R ++ SL Sbjct: 824 GPIEAIIQARNEHGVFSDLFDFCAKIDIKKVNKRVLEKLVLAGAMDNLGPHRAAIMASLQ 883 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + + A K + ++F + V + V + E+ LG Y +GH Sbjct: 884 DALEAASQHAKAESFGQGDMFGLLTDADDAEQAFANVPVWSEKVWLDGEKETLGLYLTGH 943 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P++ Y L + T + N + +A +V+ + +KG R VT + + Sbjct: 944 PINRYLSELTHYTDSRINDLKPTGKENQVAIAGLVLGVRVMTNKKGRRWAIVTLDDKSGR 1003 Query: 1027 YEANFFP 1033 + FP Sbjct: 1004 IDVRLFP 1010 >gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae SmR1] Length = 1152 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 406/1048 (38%), Positives = 601/1048 (57%), Gaps = 41/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL++HS YS+++G + +++I+ A D Q A+A+TD NLF + F ++A Sbjct: 1 MT-TPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC L I + + +++L+ GY +L E++S+ +L +Q Sbjct: 60 KGVKPIAGCDLWITNDADREKP----------FRLLVLIKNRHGYLQLCEVLSQAWLNNQ 109 Query: 125 GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K + + WL + + GLI L+G + G I +A + AE + ++F Sbjct: 110 YKGRAEVRMEWLDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPG 169 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR + + Q V L LP VAT+ F S E++ AH+ +A + Sbjct: 170 AFYLELQRAGQANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEI 229 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R Y K+++EMV +F+DLP A+ NTVEIA+RC+ +LQ+ P LP F Sbjct: 230 MANARRVRRFNEQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTP 289 Query: 299 ECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + I ++ L + AGLE L + Y RL+FE N I +MKF G Sbjct: 290 DGMTI----DDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPG 345 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPLR++LLFERFLNP+R+SM Sbjct: 346 YFLIVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSM 405 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L + Y+ D + Sbjct: 406 PDFDIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGI 465 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+ AI ++ +E + V +L+ ++Q++EG+ R+ HA G++I Sbjct: 466 SKLIPFKPGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLI 525 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ ++ Sbjct: 526 APGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDP 585 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 DL+ +P DD +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYR Sbjct: 586 AMADFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYR 645 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+G E P + +L ET G+++YQEQVMQ+AQ++ GYSL AD Sbjct: 646 PGPMDLIPDFCKRKHG-EAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGAD 704 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K +E F GA+KNG+ + A IF+L+ KFA YGFNKSHAAAYA+ Sbjct: 705 LLRRAMGKKKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYAL 764 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI-QIMPPSVNTPCVDFKV 830 +SY TA++K H+P F+AA+++L M++ +K+K +DA I+PP +N F Sbjct: 765 LSYYTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMP 824 Query: 831 GDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 +I Y L A+KG G I+EA PF L DF RVD K++NRR ++S Sbjct: 825 VGEPGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDS 884 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA DCF R L S++ + A+ + ++ ++F + + + Sbjct: 885 LIRAGAFDCFKVDRAVLQASVNLAWESAE--QAEKSANQVSLFGGDDSDLEAPLEYVQVP 942 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + R E+ LGFY SGH Y+ +R+ + LA ++ Sbjct: 943 PWSDKQRLTEEKGALGFYLSGHLFSAYEKEVRRFVRTKIASLEPSWEPR--SLAGIITGV 1000 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T++G + T + EA + Sbjct: 1001 RVQMTQRGKLV-ICTLDDGTGVIEATIY 1027 >gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 1453 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 351/1077 (32%), Positives = 543/1077 (50%), Gaps = 68/1077 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 FVHL HS +S+L+ +S+ +I+ A PA+A+TD N+ A F Sbjct: 260 DFVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHANMMGAFHFVNAVNKHNKAV 319 Query: 67 ---------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 I+PI+GC+ + + K+ IVL+ GY L +L S Sbjct: 320 EGKTTDAKKIKPIVGCEFFVC------ENHLDKSRKDNGYQIVLIAKNKNGYHNLAKLSS 373 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + D RI +++ E LI LTG G + AE+ L+ +K+ Sbjct: 374 HAFT-DGFYYVPRIDKKLIEQY-KEDLICLTGNLYGEVPSKVLNVGENQAEEALIWWKET 431 Query: 178 FGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 F D LYV L RH D R ++ LA H++ LVATNN+ + +ED AHD+L+ V Sbjct: 432 FQDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDANAHDILLCVKD 491 Query: 237 STVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI----- 284 + ++Y K+ M +IF D+P+A+ N E+ + Sbjct: 492 GEKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVVDKIEGFQLARD 551 Query: 285 ---LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 P + E D ++ E LR+ G + R + +++ +RL Sbjct: 552 VLLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGE------ELSEEVVERL 605 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 DFEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT+IDP++++ Sbjct: 606 DFELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNIDPMKYN 665 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+G++ AK+++RD Sbjct: 666 LLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKSSIRDT 725 Query: 462 GRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSV 508 R L +P DR+ KLIP + + + + + Sbjct: 726 ARVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLEKINELLNISEGEDLQ 785 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568 + I++ LEG R+ HA G++I +++ VP+ SDL VTQF+ +E AGL Sbjct: 786 AETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVVEDAGL 845 Query: 569 IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 +K DFLGLKTLTL++ ++ + + G+ +D P DD ETY L T+G+FQ ES G Sbjct: 846 LKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQYESPG 905 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 M++ L+ ++P +D+IA+ +LYRPGP++ I + RK+G E I P ++ LKET G Sbjct: 906 MQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYLKETYG 965 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 + +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI AS G Sbjct: 966 ITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDAKKLE 1025 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M++++++ F + Sbjct: 1026 KIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFME 1085 Query: 808 DARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 + ++ + ++ P VN F V DN + + + AIKGVG I++ D P+ S+ Sbjct: 1086 ECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDGPYKSI 1145 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEK 917 D R+D + N++ E+L AG DCF R Q L+ KY ++ Sbjct: 1146 FDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYGAKHQE 1205 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 N + ++F + + + + E+ V+G Y SGHPLD ++ ++ Sbjct: 1206 NENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFRTEMKN 1265 Query: 978 MGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +I +V Q + +++G T + +E F Sbjct: 1266 FCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGKGWALFTIEDYTDSFEFRIF 1322 >gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401] gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401] Length = 1127 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 414/1015 (40%), Positives = 597/1015 (58%), Gaps = 38/1015 (3%) Query: 39 DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98 PA+AITD NL ++F AGI+PI+G ++ Q + Sbjct: 1 MGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV----------QCDLLGDELTH 50 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 + +L + GYQ L L+S+ Y G I WL E+ EGLI+L+GG G + R+ Sbjct: 51 LTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRS 109 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNS 217 +S + ++ + +++ F DR ++ L R D V+LA LP+VATN+ Sbjct: 110 LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 169 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276 F+ D++AH++ +A+ + RPR +P Y+++ EM +F+D+PEAL NTVE Sbjct: 170 RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 229 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYH 333 IA+RC+ +++ + E+ L +A GLE RLA + Sbjct: 230 IAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKR 284 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL IT Sbjct: 285 RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 344 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ Sbjct: 345 DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMA 404 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 AKA +RDVGR L PY VDR+ KLIP DP + +A + + E AD V L++ Sbjct: 405 AKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALID 463 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 +++KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E AGL+KFDF Sbjct: 464 MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF 523 Query: 574 LGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 LGL+TLT++ +L+ + +R K D++ IP DD +++ +L T +FQLES GM Sbjct: 524 LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 583 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPM 681 + ++ +QPDC ED+IALV+L+RPGP+ + +V + +RK+G+E+I H + + Sbjct: 584 KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSV 643 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F GA KNGI Sbjct: 644 LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGI 703 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK Sbjct: 704 NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 763 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-AD 859 + + + ++I+PP +N+ F V D I Y + AIKGVG I+EA Sbjct: 764 VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 823 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 F L D C+R D+KKLNRRVLE L+ +GA D G R L+ SL + K A K Sbjct: 824 GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 883 Query: 920 TNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++F + + + V + E+ LG Y +GHP++ Y + + Sbjct: 884 AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 943 Query: 979 -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G ++ T RG I A +VV+ + T++G+RIG T + + E F Sbjct: 944 VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 998 >gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur 52237] Length = 1174 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 604/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP A NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215] Length = 1111 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|42523550|ref|NP_968930.1| hypothetical protein Bd2078 [Bdellovibrio bacteriovorus HD100] gi|39575756|emb|CAE79923.1| dnaE [Bdellovibrio bacteriovorus HD100] Length = 1179 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 410/1059 (38%), Positives = 603/1059 (56%), Gaps = 40/1059 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLLE A + I K AA Q PA+A+TD N+F A+EF ++P Sbjct: 2 SFVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G I L+ +V L +GY+ L +L S Y + Sbjct: 62 ILGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQ-EGFYWKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI +Q+ E LI LTGG G + +F A ++ K++F DRLY+ + R Sbjct: 121 RIDYEVIQQY-NENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMCRT 179 Query: 190 RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + +++ + +P+VA+N+ +++++D A +VL+ + + +S + R R Sbjct: 180 GVAEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESRFRL 239 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQK 305 T + YLK +M +F+D+PEA+ NT++IA RC ++ D Sbjct: 240 GTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTDDGL 299 Query: 306 EEENELRNKAVAG----LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + ++ KA AG E A+G + +Y +RL++EL +I RM F+GYFLIV Sbjct: 300 SLKEDIARKAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRMGFNGYFLIVQ 359 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK N+IPVGPGRGSGAGS+ AY L ITD+DPL LLFERFLNP+R+SMPDFDID Sbjct: 360 DFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPDFDID 419 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQDRR EVI+YV KYG E V+QIIT+G LQA+AA++DVGR L M + +VD + KLIP Sbjct: 420 FCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTKLIPE 479 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + R E +P+V+ L++++Q++EG+ RHA HAAG++I D L + Sbjct: 480 KLGINLK-EAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADGQLVR 538 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600 P+Y+ V Q++MK EK GLIKFDFLGLKTLT + +L + RG K+ + Sbjct: 539 HAPLYKGA-DGEQVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGKKIQSQM 597 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP D T+ +++ T G+FQ E G+ A ++P D+ A+ SLYRPGP+ NI Sbjct: 598 IPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGPMANIPD 657 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + +RK+GK + + +L ET G+++YQEQVM IA ++GYSL EAD+LRRAMGKK Sbjct: 658 FTDRKHGKAPVEYLLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEADMLRRAMGKK 717 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 IKEEMD+ +ERF+ GA + G K + ++F+L+ KFADYGFNKSHAAAY+V++ QTAW+K Sbjct: 718 IKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYSVVTIQTAWLK 777 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP EF AA ++ E+ + EKI K+ +DA + + + PSVN F V + IY+ L Sbjct: 778 CHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDVHGDEIYFGLG 837 Query: 841 AIKGVGTTTARHIMEASAD---KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 AIKGVG I+EA + K F+SL++F + +D++++N++V+E L+ AGA D FG Sbjct: 838 AIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIKAGAFDGFGAH 897 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R QL+ A ++K+R ++F + K+TLE+ + E+ Sbjct: 898 RAQLVAGYQKYLDRAIGLQKDREMGQSSLF-DLGPSTETKVTLEEVKPWARTASLTYEKE 956 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----------------------GNN 994 VLGFY S HPL + + + A + Sbjct: 957 VLGFYLSDHPLKGFDTLSELWTTCKVIDLPAQMPAPGSPEAEALKAAKKDWKNRDAGKKR 1016 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +A ++ ++ T+KG+R+ + + E FP Sbjct: 1017 VVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFP 1055 >gi|33240201|ref|NP_875143.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237728|gb|AAP99795.1| DNA polymerase III alpha subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1168 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 381/1045 (36%), Positives = 588/1045 (56%), Gaps = 30/1045 (2%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + GI+PI Sbjct: 3 FVPLHNHSDYSLLDGASQLPLMVARAKELGFPALALTDHGVMYGAIELLKLCKKEGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127 IG ++ + + +V+L + GY+ L++L + +L + Sbjct: 63 IGNEMYVINGSISDPQPK----KEKRYHLVILAKNSTGYKNLVKLTTISHLKGMRGRGIF 118 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I L++ +EGLI+ T G I +A VA++ +K +FG+ Y+ + Sbjct: 119 SRACIDKDLLKKY-SEGLIISTACLGGEIPQAILRGRLDVAKEVANWYKNVFGEDFYLEI 177 Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H DR + ++A + LVATN++ +L+E D EAHD L+ V +V + R Sbjct: 178 QDHGSIEDRIVNVAISKIANELNIELVATNDAHYLTENDVEAHDALLCVLTGKLVKDEKR 237 Query: 246 PRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R T YLK+ S+M ++F D E + ++ + ++ ++ + + K Sbjct: 238 LRYTGTEYLKSESQMKNLFVDHLDEEVVTKAIKNTLMVASKVEEYSILGNYKMPKFPVPE 297 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L + +V GL +L +I +Y +RL E+ +I M F YFL+V D+ Sbjct: 298 GNTPIEYLESVSVNGLLEKLKLDSID--LIDNEYSERLSTEIKIIEEMGFPTYFLVVWDY 355 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++A++ +IPVGPGRGS AGS+ AY+L IT+IDP++ LLFERFLNP+R SMPD D DFC Sbjct: 356 IKFAREQSIPVGPGRGSAAGSLVAYSLGITNIDPVKNGLLFERFLNPERKSMPDIDTDFC 415 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI YV YG ++VAQIITF + +KA L+DV R L +PY + D+L KLIP Sbjct: 416 IERRNEVIDYVTRMYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYREADQLAKLIPVVR 475 Query: 484 AHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P L A+ + S FR+ DP V + ++++ ++EG + HAAG+VI PL Sbjct: 476 GKPAKLDAMISKNSPSSEFRDKYEKDPLVKKWIDMAIRIEGTNKTFGVHAAGVVIASDPL 535 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 +LVP+ ++ +TQ+ M+ IE GL+K DFLGLK LT+L+++++ + + +VDL Sbjct: 536 DELVPLQKN-NDGQVITQYFMEDIESLGLLKMDFLGLKNLTMLERTVNLVEKSIGERVDL 594 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657 + +D +TY LL+ GIFQLESSGMRQ + +QP +EDI ++++LYRPGP+D Sbjct: 595 DELSLEDKKTYELLSRGDLEGIFQLESSGMRQIVRDLQPSSLEDISSILALYRPGPLDAG 654 Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I + NRK+G+E I H + P+L ET G++IYQEQ+M+IAQ L+GYSL +AD+LRRA Sbjct: 655 LIPKFINRKHGREAIDFPHASLAPILGETYGIMIYQEQIMKIAQDLAGYSLGQADLLRRA 714 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM K + FI GA K G+ IA +F+ + FA+Y FNKSH+ AY ++YQT Sbjct: 715 MGKKKVSEMQKHRGFFIDGAKKKGVDSKIASELFDQMVLFAEYCFNKSHSTAYGAVTYQT 774 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYPV ++AA +T+ + +KI+++ + I++MPP +N+ +DF +NRI Sbjct: 775 AYLKAHYPVAYMAALLTVNSSSTDKIQRYISNCNSMGIEVMPPDINSSGIDFTPLENRIL 834 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 + L+A++ +G R +++A D F SL D C R+ S LNRR LESL+ GALD F Sbjct: 835 FGLSAVRNLGDGVIRQLIKARVNDGLFLSLADLCDRIPSNILNRRSLESLIHCGALDAFH 894 Query: 896 Y--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKFSVENS 948 +R QL++ LD I +A ++R + N+F EK S + Sbjct: 895 PESNRAQLVKDLDLIIDWAGARARDRASGQGNLFDLSSEKEEKSDISSAPQGPIVKDYHP 954 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + + E+ +LGFY S HPL + + + + + AM+ + Sbjct: 955 TEKLKLEKELLGFYLSDHPLKQLSEPAKLIAPISLINLDDQRDKSKVSVIAMIKEMRIVN 1014 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033 TRKG ++ + + EA FP Sbjct: 1015 TRKGDKMSILQIEDLTGSCEAVVFP 1039 >gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42] gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42] Length = 1187 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 412/1057 (38%), Positives = 596/1057 (56%), Gaps = 59/1057 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ A D QPA+AITD NNLF A++F ++ G++PI Sbjct: 10 FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ + +VLLV GY L EL++R + + + Sbjct: 70 LGAEIYLEAE-----------AAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WLQE+G +GLI L G +GP+ +A A + L +F R Y+ +QR Sbjct: 119 CTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 177 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA LP+VAT+ F + +DYEAH+ + +A +++ R R Sbjct: 178 RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 237 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +EM ++F+D+P AL NTVE+A+RC+ L + P LP F E Sbjct: 238 TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGM----TME 293 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+ + GLE L + Y++RL+FEL I +M F GYFLIV DFIQ Sbjct: 294 QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAKKN PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 354 WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 414 NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 473 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + A+ + E + V ++E++QKLEG+ R+ HA G Sbjct: 474 TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 533 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ Q Sbjct: 534 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 593 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 594 RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 653 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 654 LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 713 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 714 GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 773 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP +N Sbjct: 774 YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 833 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876 F+ V D I Y L A+KG G I+ A PF SL DFC RVD + Sbjct: 834 FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 893 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932 +N+R +E+L+ AGA D +R L+ SLD ++A N +F G Sbjct: 894 VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIAN--ANQGGLFDMMGDDAIG 951 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + + L R E+ +GFY SGH D +R+ +E V + Sbjct: 952 SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1011 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +A +V + ++G R+ + + EA Sbjct: 1012 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1045 >gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of The Ternary Complex Of The Eubacterial Dna Polymerase Iii Alpha-Subunit gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of The Ternary Complex Of The Eubacterial Dna Polymerase Iii Alpha-Subunit Length = 1220 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 421/1096 (38%), Positives = 601/1096 (54%), Gaps = 82/1096 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60 + F HL H+ +SLL GA L ++L + D PA+A+TD NLF A+EF + Sbjct: 1 MGSKLKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 KA A G++PIIG + + + +GK + LL GYQ L+ L SR Y Sbjct: 59 KATAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 L + + RI L+E +GLI L+G I + + +AE RL +FGD Sbjct: 118 L-EGFYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGD 175 Query: 181 RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R ++ +Q H ++ + +QV+ + A + L +VATNN ++ +ED AH+VL+A+ T Sbjct: 176 RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKEDARAHEVLLAIQSKTT 235 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRF 295 + +R R D + E + E +NTVEIAR C L + ++ R Sbjct: 236 LDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRI 295 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334 + + E LR GL R Y Sbjct: 296 -PRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEAL 354 Query: 335 --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + R +EL+VI RM F GYFLIV D+I WA+ Sbjct: 355 ARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWAR 414 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF RD Sbjct: 415 GHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R +P+ + + L KLIP P Sbjct: 475 RVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A + R D + +++E++ +LEGL RHAS HAAG+VI PL+ LVP+ R Sbjct: 535 LQEAFEAEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D + PVTQ++M +E GL+K DFLGL+TLT L ++ + + +GV++D +P DD Sbjct: 595 D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDP 653 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T+ LL+ T G+FQLES GM + G++P +EDIIALVSLYRPGP+++I Y R + Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713 Query: 667 GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 G+E + H + P+L ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK Sbjct: 714 GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM K +ERF+ GA + G+ + A +F++L FA+YGFNKSHAAAY+++SYQTA++K Sbjct: 774 VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEF+AA +++E + +K+ ++ +DAR I ++PP VN DFKV I + L+A Sbjct: 834 HYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSA 893 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG AR I+E PF SL DF R+ + +N+R LESLV AGALD FG R + Sbjct: 894 VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 LL SL+ + ++A + + +FA + + L + S + E+ LG Sbjct: 953 LLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVEASPLDEITMLRYEKEALG 1007 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 Y SGHP+ Y P LR++ EE + L+ MV +K TR G + Sbjct: 1008 IYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMA 1066 Query: 1017 WVTFSEPAKEYEANFF 1032 T S+ E F Sbjct: 1067 RFTLSDETGALEVVVF 1082 >gi|254391618|ref|ZP_05006817.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|294812110|ref|ZP_06770753.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|197705304|gb|EDY51116.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] gi|294324709|gb|EFG06352.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] Length = 1179 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 337/1068 (31%), Positives = 538/1068 (50%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ IA+TD NL A +F +A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFSACKDMGMSHIAMTDHGNLHGAYDFFHQAKG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI PIIG + + + + + + G L Sbjct: 60 AGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG R ++ L H +R ++++ ++P + TN+S + + + AHD L+ Sbjct: 179 QDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTFDHEAGAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y ++ + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLKSTDQM-YAIDSSDAWQEGCRNTLLVAEQIDTSGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + + E + + G+ R G +D +++ ++E++VI M Sbjct: 298 AKNLMPKFEIPAGFTEVTWFQEEVRTGMARRYPGGV------PEDRQRQAEYEMDVIVSM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKKN I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY+ Sbjct: 412 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D P+S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIPLSGILDPAHPRYSEAGEIRGMYENEPDVKKVIDTARGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P++ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+++++ IP DD TY LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGIELEMLSIPLDDPTTYELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN +++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLKEVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAVQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I+ + S DF +V+ Sbjct: 832 VLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKSKGKYSSFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 VVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGDD 951 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 +D+ S E+ +LG Y S HPL + +L + Sbjct: 952 SADEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKSDASISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|194476714|ref|YP_002048893.1| DNA polymerase III subunit alpha [Paulinella chromatophora] gi|171191721|gb|ACB42683.1| DNA polymerase III subunit alpha [Paulinella chromatophora] Length = 1175 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 364/1053 (34%), Positives = 571/1053 (54%), Gaps = 37/1053 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L HS YSLL+GA + ++ PA+A+TD ++ ++E + AAGI+P Sbjct: 2 TFVPLHNHSDYSLLDGASQIPQMVKLAKELNMPALALTDHGVMYGSIELLKLCKAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L A GY+ L+++ S +L + Sbjct: 62 IIGNEMYVINGSINDPQKK----KERRYHLVVLAKNALGYKNLVKITSISHLRGMRGRGI 117 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I L++ +EGLI+ T G I ++ A + ++K+FGD Y+ Sbjct: 118 FARACIDKQLLEQY-SEGLIVSTACLGGEIPQSIINGQLDSAREIARWYQKIFGDDFYLE 176 Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR ++V++A + L+ATN++ +L+++D EAHD L+ + +V+ + Sbjct: 177 IQDHGSLEDRTVNVEIVRIAEELGIELIATNDAHYLTKDDVEAHDALLCILTGKLVTDEK 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+ EM +F D + N + ++ + + +A + + Sbjct: 237 RLRYTGTEYIKSEEEMGLLFRDHLDRDIACNAILNTKKVADKVGEYALLEDHQMPHFPLP 296 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L + GL +RL K Y +RL++EL VI M F YFL+V D Sbjct: 297 SNHTPITYLTKISQQGLSLRLK--LSNKDKDDSTYHKRLNYELKVINEMGFPTYFLVVWD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A++ I VGPGRGS AGS+ AY L IT+IDP+ L+FERFLNP+R SMPD D DF Sbjct: 355 YIRFAREVGISVGPGRGSAAGSLVAYVLGITNIDPISNGLIFERFLNPERKSMPDIDTDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C +RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY + DRL KLIP Sbjct: 415 CIERRHEVISYVMQRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLAKLIPVV 474 Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L+ + D FRE +PS+ + +++++EG + HAAG+VI P Sbjct: 475 RGKPAKLETMIADDSPVPEFREKYKNNPSIMHWVNMARRIEGTNKTFGVHAAGVVIAASP 534 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 L +LVP+ + +TQ+ M+ IE GL+K DFLGLK LT++ K+++ + G ++ Sbjct: 535 LDELVPLQLN-NDGQIITQYFMEDIESMGLLKMDFLGLKNLTMISKTVEIVRAASGEDLN 593 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + +P D E + +L GIFQLESSGMRQ + ++P C+EDI ++++LYRPGP+D Sbjct: 594 MDRLPATDTEAFKILEDGDVEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGPLDA 653 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G E I HP ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 654 GLIPKFINRKHGAEAINFTHPSLEPILGETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + FI GA + G+ + +A +F+ + FA+Y FNKSH+AAY ++YQ Sbjct: 714 AMGKKKTSEMQKHRNLFIKGAKERGVEEPLAKELFDQMVLFAEYCFNKSHSAAYGAVTYQ 773 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 A++K HYP+ ++AA +T+ +K++++ + +I++ P +N DF +I Sbjct: 774 AAYLKAHYPIAYMAALLTVNSGTSDKVQRYIANCNDIDIEVTAPDINYSGYDFTPVKGKI 833 Query: 836 YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+A+K +G R I E+ A F SL D C RV ++NRR LESL+ GA+D Sbjct: 834 LFGLSAVKNLGNGAIRQISESRAHYGQFLSLADMCDRVPIPQINRRGLESLINCGAMDSL 893 Query: 895 GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942 +R QL+ +LD +A K+R N+F + + Sbjct: 894 EPTRNRAQLIANLDLTLDWANSRSKDRAIGQGNLFDLLVISAQGKKSIRASLVTAPKSSP 953 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ ++GFY S HPL + + I + +++ +V+ Sbjct: 954 VLDYLPAEKLRLEKELVGFYLSDHPLKQLAQPAKLLPQISLSILQEQIDIDKAKVSLVVI 1013 Query: 1003 --SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K TRKG + + + EA FP Sbjct: 1014 LPEIHEKITRKGDLMAVLQLEDLTGCCEAVIFP 1046 >gi|71906199|ref|YP_283786.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB] gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB] Length = 1156 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 402/1049 (38%), Positives = 596/1049 (56%), Gaps = 42/1049 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP +VHL++HS YS+ +G + + + + + A D PA+A+TD NLF ++F A G Sbjct: 2 NSPRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI G + I D ++LLV GYQ+L EL+++ YL++ + Sbjct: 62 VKPIAGADVWITNPD----------APEDAYRLLLLVRNRVGYQQLCELLTKAYLVEGRR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I W E+G++GLI L+G G I A + +A +R ++ +F Y+ + Sbjct: 112 DRAEIRREWFAELGSDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFYLEV 171 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR+ + Q LA LPLVAT+ F++ +D+ AH+ + +A V+ R Sbjct: 172 QRYGQPQQEAIVQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYVLGDTRR 231 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ T + Y K ++EMV +F+DLPEALENT+EIA+RC+ + + LP F Sbjct: 232 PKLYTEEQYFKTQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIPPGM--- 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L +A GLEVRLA+ +Y +RL FE I +M F GYFLIVA Sbjct: 289 -TDGEYLVQEAKKGLEVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI W KKN +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDID Sbjct: 348 DFINWGKKNGVPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R VI YV+ YG + V+QI TFG++ +KA +RDVGR +PYS DR+ KLIP Sbjct: 408 FCQDNRWRVIEYVREHYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPI 467 Query: 482 DPAHPVS-LQAIADDSRFREARLAD---PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 PVS +A+ + + ++ D ++ L +++ +LE L R+ HA G++I Sbjct: 468 VQNKPVSLAEALEQEPQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAGGVLIAPG 527 Query: 538 PLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 ++ P+Y+ +D PV+QF+ +EKAGL+KFDFLGL+ LT+++ +++++ + G K Sbjct: 528 KITDFCPIYQATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYIRRMTGEK 587 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +DL + F D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPGP+ Sbjct: 588 LDLMSLGFKDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPL 647 Query: 656 DNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 + +V + K +KI HP + L T GVI+YQEQVMQI+Q++ GY+L AD+L Sbjct: 648 GSGMVDDFILRKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADML 707 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E GA + G +A +F+L+ KFA+YGFNKSH AAYAV++ Sbjct: 708 RRAMGKKKPEEMAKHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 Y TAW+K H+ F+AA+M+ ++DN + +K F +D I+++ P VN F+ D Sbjct: 768 YHTAWLKAHHCAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNYRFEPVDR 827 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I Y L A+KG G I++A A+ PF L DFC R D + +NRR E+L+ AGA Sbjct: 828 GTIRYGLGAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEALIKAGAF 887 Query: 892 DCF--------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 D G R +LL ++ +A+ E+N ++F Sbjct: 888 DTIAPEIAPGKGADRCKLLATVGVAMDFAEQAERNAM--QTSLFDMADVADEHAPEYVNV 945 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ LGF+FSGHP + K L + + +A +VV Sbjct: 946 RPWDEKTKLMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKE--MTTIAGLVVG 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + TR+G + +V + E + F Sbjct: 1004 VRTQMTRRGK-MLFVQLDDGTGMVEVSVF 1031 >gi|257465914|ref|ZP_05630225.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917070|ref|ZP_07913310.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313690945|gb|EFS27780.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1144 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 367/1033 (35%), Positives = 589/1033 (57%), Gaps = 31/1033 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+G + + + + + + AIAITD N+F ALEF QKA G++P Sbjct: 3 DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + ++LL EGYQ L++L S YL + Sbjct: 63 IIGVEIYLS-------EYPLAEKKGRNFHLILLAENYEGYQNLMKLSSLAYL-EGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L++ ++G+I L+ +G I + + E +L ++ +FG + Y+ +Q Sbjct: 115 RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173 Query: 188 RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H + + + ++PLVATN++ ++++ ++ DV++ + + +S + R Sbjct: 174 AHEEIEQQQVNEALYAFGKKMKIPLVATNDTHYVNKGEHILQDVIICIQTGSHLSDEKRM 233 Query: 247 RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R+ + EAL+N+VEIA+RC + +H P + E Sbjct: 234 RIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E L+ GL R QG + +R+++EL++I +M ++GYF++V DFI Sbjct: 291 SSLEEYLKKLTYEGLGKRYPQGLD------ERIVERVEYELSIINKMGYAGYFVVVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ Sbjct: 345 SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYRLIFERFLNPERISMPDIDIDICQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR + + S++D+ K IP + Sbjct: 405 ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELSKIDKAAKCIPMFAS 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + ++ + D + ++ + ++E RH STHAAG++I + L++ VP Sbjct: 465 ---LREVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + K++LS IP Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 D Y +L+ + G+FQ+ES G+R L+ +QP+ DI+AL+SLYRPGP+ + + + Sbjct: 582 QDKTVYEMLSKGDSFGVFQMESRGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK+GK+ I HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 642 IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M + + +FI + K G S+ A IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K Sbjct: 702 VEIMHENRSKFIERSIKKGYSREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F AA ++ E+ +++KI + DA+ ++I P V P F V ++I ++L+A Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821 Query: 842 IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK VGT + + E F S EDF R+ + LN++ LE+ ++AGALD +R + Sbjct: 822 IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 ++SLD + Y Q K + N+F K + +L + V E E+ LG Sbjct: 882 KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRIEEYPMEVLLEKEKEFLG 940 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +PLD Y+ + + + + L ++ + ++ +T+KG + + Sbjct: 941 FYVSANPLDRYESLYQSFDFDEFNIIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000 Query: 1021 SEPAKEYEANFFP 1033 + FP Sbjct: 1001 ENYQGQIPMVIFP 1013 >gi|257460063|ref|ZP_05625167.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268] gi|257442504|gb|EEV17643.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268] Length = 1381 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 375/1066 (35%), Positives = 594/1066 (55%), Gaps = 53/1066 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 + HL +H+ YSLL+GA ++ + + + + A AITD N+F A++F Q GI+ Sbjct: 2 SDYTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + D++ G ++LL GY+ L+ L SR +L D Sbjct: 62 PIIGIETYLHNHDDI-----GDKSDRQRYHLILLAKNETGYKNLMYLSSRAFL-DGFYYY 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFKKLFG 179 RI L+E +EGLI + +G ++ + A+K L +K++FG Sbjct: 116 PRINKKILKE-HSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFG 174 Query: 180 DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ + RH ++ + +++L+ + ++ATN++ + ++ +AHDV ++ Sbjct: 175 EDFYLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGK 234 Query: 239 VVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ DR + + EM +F+D+PE +ENT EI ++C+ Sbjct: 235 TINDGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPP 294 Query: 298 KECDDIQKEE-----------------ENELR-NKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 I+ ++ L + GL+ RL A + YR+ Sbjct: 295 NFKFTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPA---KHEIYRE 351 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+ EL +I M FSGY +IV DFI WAK ++IPVGPGRGS AGS+ AYAL ITD+DP+ Sbjct: 352 RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 ++LLFERFLNP R+SMPD D+DFCQ RR EVI YV ++YG VAQ+ TFG L A+ +R Sbjct: 412 YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 DV R MP SQ D++ KLIP+ ++ QA + + +E ADP ++ E + LE Sbjct: 472 DVARVCDMPLSQADKMAKLIPDKLGITLT-QAYDAEPKLKEFIDADPIAQQVWEFALGLE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLK 577 GL R+A HAAG+VI + PL P+++ + + VTQ+ ++E LIKFDFLGLK Sbjct: 531 GLNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLK 590 Query: 578 TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 L ++ + + +R + I F+D +TY + + TLGIFQ+E +GM+ ++ Sbjct: 591 NLDVIDNAAKLVKRRYGRDIVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLR 650 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PD EDIIA++SLYRPGP+D I + K+G+ K I P + +L+ T G+I+YQEQVM Sbjct: 651 PDRFEDIIAMISLYRPGPMDLIPDFIRIKHGELKASYIFPELKEILEPTYGIIVYQEQVM 710 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 QI Q + G+SL +AD++RRAMGKK ++++ +E+++SGA + G A +F+L+ KF Sbjct: 711 QIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFDLIMKF 770 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E N +KI K+ +A + I + Sbjct: 771 ASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASRLGIGL 830 Query: 817 MPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 +PPS+N F V D+ I Y L AIKGVG +I+E ++ F S++DF Sbjct: 831 LPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAKFQSIDDFA 890 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 SRVD+ ++N++V+ESL++AGA+DC G SR+ ++Q+++NI + + + + + + ++F Sbjct: 891 SRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAASSLFGE 950 Query: 930 EKGTFSD-KITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 ++ S ++ + EQ+ +G Y SGHPLD YK + + Sbjct: 951 DEDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIEGIDYTLSSAFS 1010 Query: 988 ATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + T+ G ++G + + +E F Sbjct: 1011 EIEGDSAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVF 1056 Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%) Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL----AAMVVSKQQKKTRKGSRI 1015 G + S +PL Y L + E + + + + + T+ G ++ Sbjct: 1114 GVFLSENPLKAYAAQLGAIAHTKSNEFDELAGDEDASVKILCVGKIENVHTRTTKSGKQM 1173 Query: 1016 GWVTFSEPAKEYEANFF 1032 +T + A +E + F Sbjct: 1174 ANLTVLDLAGSFEMSAF 1190 >gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga sputigena Capno] Length = 1485 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 344/1085 (31%), Positives = 558/1085 (51%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Q Sbjct: 255 FAHLHNHTQHSILQSTTSIKDLVKVTAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314 Query: 62 -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A G I+PIIGC+ +I + KT +V+L +GY Sbjct: 315 AKNKEAEEKGETPTETLIKPIIGCEFNIC------ENHLDKTRQDNGYQVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S RI + +++ ++ L++L+GG +G I ++ AE+ Sbjct: 369 HNLTKMASIASTKG-FYYVPRIDKTIVEQYKSD-LMVLSGGMNGEIPSKILNIGTKQAEE 426 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FG+ Y+ + RH D R +V+ + + + L+ATNN+ +L ++D AH Sbjct: 427 ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486 Query: 229 DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V ++Y K +EM ++F D+PEA+ N EI + Sbjct: 487 DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546 Query: 282 SFILQVHAPILPRFIEKECD------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335 +LP+F E +K E N LR+ G + + + Sbjct: 547 EPYGLARDILLPKFDIPEEFQVSDDLTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + R+RLDFEL++I + + GYFLIV DFI A++ + VGPGRGS AGS A+ L IT++ Sbjct: 600 EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMGVSVGPGRGSAAGSAVAFCLDITNM 659 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + AK Sbjct: 660 DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719 Query: 456 AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501 +A++D R L +P + +RL L + + + +++ + Sbjct: 720 SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELLKVDELKRL 779 Query: 502 --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + + ++ + +EG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 780 LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618 +E AGL+K DFLGL TLTL++ +++ + Q D P DD +TY L T+ Sbjct: 840 NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P + Sbjct: 900 GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FI+ AS+ Sbjct: 960 EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M++ Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAFLKANYPAEYMAAVLSNNMND 1079 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 ++ I F ++ + I+++PP VN F V + I + + A+KGVG I+E Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPLD Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDVPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K L + + +A MV Q + ++ G G++T + Y Sbjct: 1260 DFKHELHNFCNISLSQLQDLNSFINRELTVAGMVADLQHRTSKNGKGFGFLTLEDYDGSY 1319 Query: 1028 EANFF 1032 E F Sbjct: 1320 EFKLF 1324 >gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14] Length = 1103 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G ++ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|298346985|ref|YP_003719672.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298237046|gb|ADI68178.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 1226 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ Sbjct: 1 MPSS-DFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 AGI+PIIG + + + + + LL T EG Sbjct: 60 AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S L Q + R L+ EGLI G SG + Q A + Sbjct: 120 LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG D YV L H + +++LA P++ATN+S ++ +ED E D Sbjct: 179 GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + +S DR R Y EM +F+++PEAL+NT+ IA +C+ Sbjct: 239 AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + ++E + + GL+ R G +++ R+R D+E+ +I Sbjct: 299 KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S+ ++L K +P + + FR+ DP ++ +++ +E Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLGLK L Sbjct: 531 GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL + DD TY LL+T TLG+FQL+ GMR L+ ++P Sbjct: 591 TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK T G+IIYQ Sbjct: 651 EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ ++ + Sbjct: 711 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 771 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN F N I + LA+I+ VG I++A + + S DF + Sbjct: 830 GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R + SL+ AGA D FG R L + + ++ +N ++FA + Sbjct: 890 VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949 Query: 932 GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ + S + E+ +LG Y S HPL +L + Sbjct: 950 MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009 Query: 983 YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + + +++A +V + K +++ G + + E FF Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063 >gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344] gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4] gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229] gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247] gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20] gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399] gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH] gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU] gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280] gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC 23344] gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229] gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247] gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH] gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU] gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280] gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399] gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4] gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20] Length = 1174 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 230 RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|212715528|ref|ZP_03323656.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM 16992] gi|212660895|gb|EEB21470.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM 16992] Length = 1196 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 334/1082 (30%), Positives = 550/1082 (50%), Gaps = 64/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FV L H+ YSLL+GA + +++ + PA+ ITD N+ A E A Sbjct: 1 MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60 Query: 65 AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103 G++PIIG + + + + + + + + + Sbjct: 61 EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 T EG L++ + L + + R+ L + ++G+I +G SG I Sbjct: 121 ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179 Query: 164 SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221 A + + +FG D Y+ H ++ ++ +A PL+ATN+S ++ Sbjct: 180 FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 ED + D ++ + + + + R + +YLK+ EM +F D+PEA +NT+EIA R Sbjct: 240 AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + H + +E + K GLE R G+ + ++ Sbjct: 300 CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLRKVEEGLEQRY------DGHPPIEVLKQ 351 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 D+E VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ Sbjct: 352 ADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPIKH 411 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 L+FERFLNP+R+S+PD D+DF D R V+ YV +KYG ++VAQ + +G+++ K AL+D Sbjct: 412 GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQALKD 471 Query: 461 VGRALQMPYSQVDRLCKLIPN--DPAHPV--------SLQAIADDSRFREARLADPSVDR 510 R + +S +R+ K +P + + + A+ FRE +DP R Sbjct: 472 SARIMGYEFSMGERITKALPPAQTGGKDIPLRDIFEPTSKRYAEAREFRELYDSDPDAKR 531 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 + + + +EGL R HA ++G P+S P+ + T E GL+K Sbjct: 532 VTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590 Query: 571 FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGL LT+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR Sbjct: 591 MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDGMR 650 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683 L+ ++P+ DI AL++LYRPGP+D Y RKNG +KI IHP + +L Sbjct: 651 SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+I+YQEQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ Sbjct: 711 ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSQ 770 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 A ++++L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K Sbjct: 771 EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKP 861 + +AR+ IQ++ P VN ++ + + + L AI+ VG I++ + Sbjct: 831 LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERDGSHGR 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + + DF RV + LNRR++ESL+ AGA D +R L + +++ + Sbjct: 891 YVNFPDFIKRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQAE 950 Query: 922 KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++FA + + D +++ + + E+ +LG Y S HPL + I Sbjct: 951 GQFDLFADLEDSGEDDAGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010 Query: 975 LRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 L + G + +A ++ + ++ ++KG+ VT + + Sbjct: 1011 LVSLSEMSIAHLIDRAANMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCM 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|121600233|ref|YP_992382.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1] gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1] Length = 1686 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 511 APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 569 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L Sbjct: 570 RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 619 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + SWL+ EGL+ L+G G I A + A + + ++F Sbjct: 620 NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 679 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR+ Q V +A +LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 680 YIELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 739 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LPRF + Sbjct: 740 NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 799 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ RL Q + Y QRLDFE I +M F GYF Sbjct: 800 MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 855 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 856 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 915 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 916 FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 975 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 976 LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 1035 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 1036 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 1095 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPG Sbjct: 1096 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 1155 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 1156 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 1215 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 1216 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 1275 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K H+P EF+AA+MTL MD+ +K+K D + ++PP +N F+ Sbjct: 1276 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAE 1335 Query: 834 R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+++ Sbjct: 1336 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 1395 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QLL S+ + A+ N +F G + + L Sbjct: 1396 RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1452 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + Sbjct: 1453 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1509 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1510 QMTQRGK-MVIALLDDGTGQCEVTVF 1534 >gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16] gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16] Length = 1173 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 414/1060 (39%), Positives = 610/1060 (57%), Gaps = 49/1060 (4%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + +P FVHL++HS YS+++G + L + + AAD A+A+TD N F + + ++A Sbjct: 1 MSPMSAPRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++P++G + + ++ ++LLV GY L L+SR +L Sbjct: 61 RGKGVKPVVGADVWLTNAEDRDKP----------SRLLLLVQDRRGYLNLCMLLSRAWLG 110 Query: 123 DQGKQSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 +Q + I +W E G + GLI L+G G I A ++ A + + Sbjct: 111 NQHRGRAEIDPAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWST 170 Query: 177 LFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +F R Y+ LQR Q VQLA +LP+VAT+ F++ +DY AH+ + +A Sbjct: 171 VFAQRFYIELQRAGNAGTDAYVQQAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIA 230 Query: 236 HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 +++ R R T D Y K + EM ++F+D+P ALEN VEIARRC+ L++ P LP Sbjct: 231 EGELLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPL 290 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARM 351 F + + ++ L A GLE RLA + +Y RL+FE I +M Sbjct: 291 FPTPDGMSL----DDYLVYMAKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKM 346 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+ Sbjct: 347 GFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPE 406 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y Sbjct: 407 RVSMPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGF 466 Query: 472 VDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VD + KLIP P V+++ ++ E + V +LLE++Q++EG+ R+ HA Sbjct: 467 VDGIAKLIPFKPGKLVTIEEAKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAG 526 Query: 531 GIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 G++I L+ P+Y + V+Q++ +E AGL+KFDFLGL TLT+L + Sbjct: 527 GVLIAPGRLTDFCPLYTQGAQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAE 586 Query: 587 DFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ + + S IP DD + +L T T+ +FQLES GM+ L+ +PD EDI Sbjct: 587 RYIRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDI 646 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IALV+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ Sbjct: 647 IALVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIG 706 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK EEM + + F GA KNG+S A +IF+L+ KFA YGFNK Sbjct: 707 GYSLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNK 766 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + + ++PP VN Sbjct: 767 SHAAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNA 826 Query: 824 PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882 F D I Y L IKG G I+ A ++PF L DFC RVD +++NRR + Sbjct: 827 SEYRFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTI 886 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941 E+L+ AGA D +R QLL S+ + A+ +K + ++F + L Sbjct: 887 EALIRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELL 944 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNI 995 + + E++ LG+YFSGH D Y+ +R+ ++ G ++ Sbjct: 945 DEPRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDV 1004 Query: 996 R---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R +A ++ + + T++G + VT + E F Sbjct: 1005 RGKTIAGVISGVRTQMTQRGK-MVIVTLDDGTGLVEMTVF 1043 >gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] Length = 1142 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 395/1034 (38%), Positives = 591/1034 (57%), Gaps = 41/1034 (3%) Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76 H+ YSL++G + + ++ +AA + PA+AITD N + ++ + A +AGI+ I+G Sbjct: 2 HTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADFW 61 Query: 77 IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136 + D+ + S+ LL GYQ L L++R + Q + +WL Sbjct: 62 VVDPDDPDRHH----------SLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAWL 111 Query: 137 QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRY 195 + EGLI L+GG G + + + A + L+ +++ F DR Y+ LQR + Sbjct: 112 GD-HAEGLIALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEED 170 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYL 254 V LA + P+VATN+ FL+ ++EAH+ + + + RPR + +L Sbjct: 171 YIHAAVALAAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQFL 230 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314 ++ EM ++FSD+PEA+ENTVEIARRCS +++ P LP F E + E+ L + Sbjct: 231 RSAEEMAALFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPE----EHSTESFLAHL 286 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 A GL VRL Y++RLDFEL +I M F GYFL+V DFI+WAK+ IPV Sbjct: 287 ANEGLAVRLRALG---NPDPAPYQERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGIPV 343 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRDEVI YV Sbjct: 344 GPGRGSGAGSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIDYV 403 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494 + YG E V+QIITFG++ AKA +RDV R P+ D++ KLIP + + + Sbjct: 404 ADMYGREAVSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVGMTLEKA-LRQ 462 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 + ++ D + + +++ +LEG R+ HA G+VI L+ P+Y D Sbjct: 463 EDAIKDLLREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGGGV 522 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY 609 VTQ++ +E+AGL+KFDFLGL+TLT++ ++ + +R + D+S +P DD + Sbjct: 523 VTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPAVF 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YN 662 +L T +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V + Sbjct: 583 KVLQQAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 642 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + HP++ P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+LRRAMGKK Sbjct: 643 REQVSYPDAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKL 702 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM KQ+ F GAS+ GI +A IF+L+ KFA YGFNKSH+AAYA++SYQTAW+K H Sbjct: 703 EEMAKQRSVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAH 762 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841 YP EF+AA M+ E+DN +K+ + +Q I + PP N F V D I Y L A Sbjct: 763 YPAEFMAAVMSSELDNTDKLITLRDECKQLGITVRPPDANEGEYAFSVNDRGEIIYGLGA 822 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IKG+G I+ A PF L +FC R D +K+NRR +E+L+ +GALD G R + Sbjct: 823 IKGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERWIM 882 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEKFSVENSSVRFENEQRV 958 + ++++ + A+ N ++F +S E+ Sbjct: 883 MSAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEKES 942 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 +G + SGHP++ Y+ +RK + + A N+ +A ++VS + +T++G + + Sbjct: 943 IGSFLSGHPMEEYEAEVRKFASRRIRDLQA---DNSATVAGLIVSVRTIRTQRG-VLAVL 998 Query: 1019 TFSEPAKEYEANFF 1032 + + + EA F Sbjct: 999 GIDDGSGQIEATVF 1012 >gi|78485459|ref|YP_391384.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2] gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2] Length = 1158 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 418/1050 (39%), Positives = 606/1050 (57%), Gaps = 47/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YS+++ + + + + QQPA+A+TD N+F+ ++F A AGI+PI Sbjct: 4 FVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----K 126 IG L I+ +D V +V L +GY L L+S YL +Q Sbjct: 64 IGSDLLIEAEDG------------NVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQND 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E EGLI+L+GG G + +A +A KR+ + F DR Y+ L Sbjct: 112 MKALIKQEWLAEF-NEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLEL 170 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R + + V +A +ELP+VATN+ F ED++AH+V + + ++ +R Sbjct: 171 IRTGRDKEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNR 230 Query: 246 P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P R + + Y ++ EMV +F D+PEA+ENTVEIA+RC+ L + LP F E Sbjct: 231 PKRYSEEQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEG---- 286 Query: 305 KEEENELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ GL+ RL A + Y RL FEL++I +M F GYF I Sbjct: 287 LTLDEYFILESQKGLDERLNFLFGDLSPEAFAEKRKAYDDRLKFELDIITQMGFPGYFFI 346 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQW K + +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 347 VADFIQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 406 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC +RRDEVI YV +YG + V+QI+TFG++ AKA +RDVGR L Y VD + KLI Sbjct: 407 VDFCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLI 466 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 PND + A+ + + +E + V L++++ KLEG R+ HA G+VIG +PL Sbjct: 467 PNDLGIKL-QGALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPL 525 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGV 594 P+ + VTQ + +E AGL+KFDFLGL+TLT++ +L F+ + Sbjct: 526 DHFCPVLCEPDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEG 585 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 V++ IP DD +T+ L+ T T G+FQLESSGM+ + ++PDC EDIIALV+L+RPGP Sbjct: 586 FVEIERIPLDDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGP 645 Query: 655 IDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V N K H + +L+ T GVI+YQEQVMQIAQ+L+GY+L Sbjct: 646 LESGMVDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTL 705 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KN + +A+ IF+L+ KFA YGFNKSH+A Sbjct: 706 GGADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSA 765 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQ+AW+KTHYP EF+AA ++ +MDN +K+ + I + PS+N + Sbjct: 766 AYALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECYAMGIDVAQPSINEGEIH 825 Query: 828 FKV--GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884 FK G + Y L AIKGVG + I+ + P+ L DFC RV ++K+N+RV+E+ Sbjct: 826 FKAIRGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRV-TRKVNKRVIEA 884 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943 L+ AGA+DC +R +L S+ + A+ +K+ ++F ++ + L Sbjct: 885 LISAGAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGDVTSFEAENESKLVDV 944 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 +R + E+ VLG Y +GHP+++Y+ L KM + A ++V Sbjct: 945 PEMPEKLRLKGEKDVLGLYMTGHPIEIYREELDKMVEQKLSALRPEKWNKK-WAAGLIVE 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + K TR GSR+G++ + + P Sbjct: 1004 ARNKVTRNGSRMGFLAIDDQTARLDVVLRP 1033 >gi|315604412|ref|ZP_07879478.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315314118|gb|EFU62169.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 1180 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 351/1064 (32%), Positives = 545/1064 (51%), Gaps = 46/1064 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL HS YS+L+GA + ++ A QPAI +TD LF A +F AG+ Sbjct: 2 ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAYDFYTNCVNAGV 61 Query: 68 QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 +PIIG + + + + + + L+ + EG L L Sbjct: 62 KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRSDDVSAGGSYNHLTLVAYSTEGMLNLFRLG 121 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R L + EGLI+ TG SG + A + Sbjct: 122 SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180 Query: 177 LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG + YV + H +R QV+ +A PLVATN+S ++ +D + D L+ + Sbjct: 181 IFGPENFYVEVMDHGIDIERRTHQQVLDIAKLMNAPLVATNDSHYVKRDDRKIQDALLCI 240 Query: 235 AHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ DR + D Y EM S++S+LP A ++T+EIA RC Sbjct: 241 NSGSRINDPDRFKFDGDGYYIRPSEEMRSLWSELPGACDSTLEIAERCDVRFTTTKEGAN 300 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 E D +++ + + GL R G R++ +E +VI M F Sbjct: 301 YMPEFPVPD-GEDKTSWFVKEVERGLRDRFPNG------IPDAVRKQAQYEEDVIISMGF 353 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL VAD+I WAK I VGPGRGSGAGS+ AYA+ IT+++PL L+FERFLNP+R+ Sbjct: 354 PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERFLNPERI 413 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D R L + + Sbjct: 414 SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473 Query: 474 RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524 +L K P +S+ I D+ FR+ +P +++ + LEGL R Sbjct: 474 QLTKALPPAIMGKDISVHGIFDEKDKRYAEAAEFRKFYEENPDTHEVVDYALGLEGLTRQ 533 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA +++ L+ ++P+ + + +TQF+ E GL+K DFLGL+ LT++ Sbjct: 534 WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ +A DL + FDD +TY LL TLG+FQL+ GMR L+ M+PD EDI Sbjct: 594 ALENIAINGKPDPDLDHLSFDDKKTYELLGRGETLGVFQLDGGGMRDLLKLMKPDNFEDI 653 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 A+ +LYRPGP+ ++ Y RKNG+++I IHP + L+ T G+I+YQEQVMQ Sbjct: 654 SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVYQEQVMQ 713 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F G NG S+ +++++ F+ Sbjct: 714 IAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMIDNGYSEESIKALWDVVVPFS 773 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNK+H+AAY ++SY TA++K +YP E++AA +T DN ++ + + R +I ++ Sbjct: 774 AYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN +F I + L AI+ VG I+ A+ F S +DF +V Sbjct: 834 PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVGTRAEKGRFASFQDFLDKVPQVV 893 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N+R ++SL+ AGA D G++R LL D V++N ++F S Sbjct: 894 CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALDEGSSS 953 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VAT 989 + + + + E+ +LG Y S HPL + L + + Sbjct: 954 GTGLAVDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSEGA 1013 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +++A +V K T++G+ T + + + FFP Sbjct: 1014 MADRIVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057 >gi|221632747|ref|YP_002521969.1| DNA polymerase III subunit alpha [Thermomicrobium roseum DSM 5159] gi|221155959|gb|ACM05086.1| DNA polymerase III alpha subunit [Thermomicrobium roseum DSM 5159] Length = 1166 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 374/1053 (35%), Positives = 568/1053 (53%), Gaps = 49/1053 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + + HL +H+ +SLL+G + + + +AI+D L+ +++ + A Sbjct: 1 MARP--YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ PIIG + + + T+ ++LL GY+ L++L +R L + Sbjct: 59 EGLHPIIGMEAYLAPRSVQDRDK-------TIYHLLLLAENERGYKNLLKLATRASL-EG 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI ++ L E EGLI + GPI + + A + + ++LFG DR Y Sbjct: 111 FYYKPRIDMAMLAE-HAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFY 169 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQ H ++ R S++V LA +LPLV TN+ +L +ED D+L+ + ++ + Sbjct: 170 IELQDHGLPEQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDD 229 Query: 243 KDRPRVTPDHYLKN--RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R RV D +++PEAL NTV IA RC L+ LP Sbjct: 230 PKRMRVQSDQLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ++ L G+ R + ++ R+RL++EL+VI + FS Y LIV Sbjct: 290 M----TADDYLAALCWEGIRQRYPE-------LTEEVRRRLEYELDVIRQTGFSSYMLIV 338 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF ++A++ I G RGS A S+ YAL ITD+DPL L+FERFLNP+R MPD D+ Sbjct: 339 RDFAEFARQRGILYG-VRGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDM 397 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF DRR EVI YV KYG E VAQIITFG++ AKAA+RDVGRA+ P+++VDR+ +LIP Sbjct: 398 DFADDRRHEVIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIP 457 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A+ + R DP L++ ++KLEG+ RHA THAAG+VI PL Sbjct: 458 SGVNMTLE-RALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLV 516 Query: 541 QLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596 + VP+ R R++ P TQF M+ + + GL+K DFLGL LT+L +++ + + RG + Sbjct: 517 EHVPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGETI 576 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL IP DD +T+ LL T G+FQLES+GMR+ + ++P + ++ A+++LYRPGP+ Sbjct: 577 DLKQIPMDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQ 636 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +I Y K+G E I HP + +L ET GVI+YQ+QV+ IA+ +GY+L EAD++R+A Sbjct: 637 HIPRYCRAKHGLEPIQYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKKI E+M ++ERFI+GA G S+ A IF L+ FA Y FNK+HA YAV+SYQT Sbjct: 697 MGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQT 756 Query: 777 AWMKTHYPVEFLAASMTLEMDNV----EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 A++K +YPVE++ A + + ++I + ++ I ++PP +N F V Sbjct: 757 AYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQ 816 Query: 833 -----NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLES 884 I + LA +K VG I+ A ++P F S E FC +D +NRR +ES Sbjct: 817 LPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVES 876 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--EK 942 L+ GALDCFG R LL LD + AQ +K ++F+ + + Sbjct: 877 LIKCGALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRPD 935 Query: 943 FSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + R E+ +LG Y S HPLD + + R G+ E G + L A+ Sbjct: 936 IEPPDIPTRTLLGWERELLGVYLSAHPLDEFVLLGRLRGLVQIAELDDESVGQTVELLAL 995 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ TR G + + + + EA FP Sbjct: 996 ISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFP 1028 >gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501] gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501] Length = 1453 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 349/1078 (32%), Positives = 545/1078 (50%), Gaps = 71/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ + + +++ A + PA+A+TD N+ A F ++ A Sbjct: 260 FAHLHNHSQFSVLQSTMGIKDLVAAAAEYRMPAVALTDHANMMGAFHFVREVKAHNSNLT 319 Query: 67 ----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 + PIIGC+ + N K+ +V+L +GY L ++ Sbjct: 320 EEDRASGKRDLIPIIGCEFFVCEDRN------NKSVKDYGYQVVMLAKNKKGYHNLAKMS 373 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Y + RI ++ E +I+LTG G + + AE+ LL +K+ Sbjct: 374 SIAYT-EGFYYVPRIDREVVERY-KEDVIVLTGNLYGEVPSKVLNQGEKQAEEALLWWKE 431 Query: 177 LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG+ LYV + RH D R +Q +V LA HE+ LVATNN+ + +ED EAHD+L+ V Sbjct: 432 QFGEDLYVEVMRHGQEDEDRANQSLVALAKKHEVSLVATNNTYYRRKEDAEAHDILLCVK 491 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL--- 292 + L N+ ++ E + E + I++ P Sbjct: 492 EGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKELFRDLPESIQSIEGIIEKIEPFDLAR 551 Query: 293 ------------PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 R E D ++ E LR+ G E G + R+R Sbjct: 552 DVLLPKFEIPEEFRVAEDAADGGKRGENAYLRHITFQGAEK-------RYGEITEAIRER 604 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 LDFEL+ I + GYFLIV DFI+ A+ + VGPGRGS AGSV AY L IT+IDPL++ Sbjct: 605 LDFELSTIENSGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSVVAYCLGITNIDPLKY 664 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQIIT+G++ AK+++RD Sbjct: 665 DLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMAAKSSIRD 724 Query: 461 VGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPS 507 R L +P S+ DR+ KLIPN + +A + Sbjct: 725 TARVLDLPLSEADRIAKLIPNMSKLAKIFGQDEAELKKKFRSDDLAKVNELLNLSEGSDL 784 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 + + +++ LEG R+ HA G++I ++ VP+ SDL VTQF+ +E AG Sbjct: 785 EAQTVNMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYVTQFDNSVVENAG 844 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGLKTLTL++ ++ + R + P DD ETY L T+GIFQ ES Sbjct: 845 LLKMDFLGLKTLTLIKDTVKIVKARHGIDLIPDDFPLDDAETYELFQRGETVGIFQYESP 904 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM++ L+ ++P +D+IA+ +LYRPGP++ I + RK+G+E+I P ++ L+ET Sbjct: 905 GMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGQEEITYDLPEMEEYLQETY 964 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM ++Q L+G+S EADVLR+AMGKKI + K K +F+ G NG + + Sbjct: 965 GITVYQEQVMLLSQKLAGFSKGEADVLRKAMGKKIFALLQKLKPKFLDGGEANGHPRDVL 1024 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M++++++ F Sbjct: 1025 EKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFM 1084 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864 ++ R+ + ++ P VN F V DN++ + + AIKGVG + I+E + P+ S Sbjct: 1085 EECRRMGLDVLGPDVNESYYKFAVNKDNQVRFGMGAIKGVGRSAVETIVENRKANGPYQS 1144 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVE 916 + D R+D + N++ E+L AG D G R Q L+ + ++ + Sbjct: 1145 IFDLAKRIDLRAANKKAFENLALAGGFDSLGNAHRAQYFDCGTDGVSFLEKVIRFGARFQ 1204 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++ + ++F + + + + E+ V+G Y SGHPLD +K ++ Sbjct: 1205 ESENSSQVSLFGGSSEVQIAEPEIPPCEEWGTMETLKREKEVVGIYISGHPLDDFKTEIQ 1264 Query: 977 KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA ++ Q + ++ G T + + +E F Sbjct: 1265 AFCNTEIYALNDLSPYLNRELSLAGVITDVQHRVSKNGKGWAIFTLEDYSDAFEFKIF 1322 >gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786] Length = 1174 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 411/1044 (39%), Positives = 601/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + K F Y+ Sbjct: 110 YRGRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++ P +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEITVF 1022 >gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] Length = 1152 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 397/1044 (38%), Positives = 601/1044 (57%), Gaps = 39/1044 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL++HS YS+++G + +++++ AAD QPA+AI+D NLF ++F ++A + GI Sbjct: 3 SPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC + I ++ ++LLV +GY +L EL+S+ +L + + Sbjct: 63 KPIVGCDVWISNDNDRDKP----------SRLLLLVKNKDGYLQLCELLSKAWLTNLHRG 112 Query: 128 SVRICLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL+++ +G LI+L+G G + A + AE+ + +LF Y+ Sbjct: 113 RAEIRPEWLEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYI 172 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR + Q LA LPLVAT+ FL E++ AH+ ++ +++ Sbjct: 173 EVQRAGQPNMDGHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANP 232 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R K ++EM +F+D+P AL+N+VEIA+RC+ +L++ P LP F + Sbjct: 233 RRIKRFNEQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSS 292 Query: 303 IQKEEENELRNKAVAG---LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 I + L +A G L A+ H + Y+ RL FE + I +M F GYFLI Sbjct: 293 I----DEFLVKEAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLI 348 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD Sbjct: 349 VADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFD 408 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L Y+ D + KLI Sbjct: 409 IDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLI 468 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ I ++ E + V +LL+++Q++EG+ R+ HA G++I Sbjct: 469 PFKPGKLVTISDAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGK 528 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ ++ Sbjct: 529 LTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMAD 588 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP+ Sbjct: 589 FALEKLPLNDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPM 648 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 649 DLIPDFCRRKHG-ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM + +E F +GASKN +S A IF+L+ KFA YGFNKSHAAAYA++SY Sbjct: 708 AMGKKKAEEMAEHRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYH 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKVGD-- 832 TA++K H+P F+AA+++L MD+ +KIK +DA + ++PP +N F Sbjct: 768 TAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVP 827 Query: 833 ----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +I Y L A+KG G ++EA ++PF L DF RVD +++NRR ++SL+ A Sbjct: 828 GKKATQIRYGLGAVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA DCF R LL S+ + ++F + K S + Sbjct: 888 GAFDCFDVDRAILLASV--AFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVSPWSD 945 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + E+ LGFY SGH + Y R+ + +A ++ + + Sbjct: 946 KQKLTEEKAALGFYLSGHLFNAYADEARRFARAKLSSLEPSREPR--TIAGVISGLRTQM 1003 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G RI VT + + + + Sbjct: 1004 TQRG-RITIVTLDDGSATVDVTVY 1026 >gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis MED217] Length = 1460 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 343/1085 (31%), Positives = 541/1085 (49%), Gaps = 77/1085 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------A 62 FVHL HS +S+L+ S+++++ + PA+ ITD N+ A F + A Sbjct: 260 DFVHLHNHSQFSILQSTASVHDLVAAAKKHKMPAVGITDMGNMMGAFHFVKALTAHNKAA 319 Query: 63 CAAG--------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 I+PI+G +L++ + K+ IV L G Sbjct: 320 QKKNDELLEAGEEPTETIIKPIVGAELNVC------QDHTNKSQKDNGYQIVFLAKNKRG 373 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y L ++ S Y D RI ++ E +I+LTG G + + AE Sbjct: 374 YHNLAKMASLAYT-DGFYYVPRIDRKIVERY-KEDIIVLTGNLYGEVPSKVLNVGEKQAE 431 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + LL +K+ FGD LY+ + RH D R +++ + H++ LVATNN+ ++ +ED A Sbjct: 432 EALLWWKETFGDDLYIEVMRHGQEDEDRVNQTLIEFSKKHDVKLVATNNTFYIDKEDAPA 491 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ- 286 HD+L+ V V+ L N ++ + E I+ Sbjct: 492 HDILLCVKDGEKVATPKGRGRGYRFGLDNEEYYFKSADEMKALFTDLPEAISNVDEIVDK 551 Query: 287 --------------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332 P +F E + D ++ E L++ G R + Sbjct: 552 VEAFVLARDVLLPAFTIPEEFQFEEDKQDGGKRGENKYLKHITFEGARQRYPE------- 604 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 D +RL+FEL+VI + GYFLIV DFI+ A+ + VGPGRGS AGS AY L I Sbjct: 605 ITPDIEERLNFELSVIENTGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSAVAYCLGI 664 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQIIT+G++ Sbjct: 665 TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTM 724 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFR 499 AK+++RD R L +P S DR+ KLIPN D + + + Sbjct: 725 AAKSSIRDTARVLDLPLSDADRIAKLIPNMSKLAKIFGQSEADLKKKFRSEDLVKVNELL 784 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 D + L +++LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 785 NLAEGDDLEGQTLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFD 844 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618 +E+AGL+K DFLGLKTLTL++ ++ + + D P DD +TY L T+ Sbjct: 845 NSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDSFPLDDQKTYELFQRGDTV 904 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I P + Sbjct: 905 GIFQYESPGMQKHMQALKPTVFEDLIAMNALYRPGPMEYIPSFIARKHGEEEIQYDLPAM 964 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + L+ET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKKI ++K K +F+ G K Sbjct: 965 EEYLEETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLDGGEK 1024 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I I++ FA Y FNKSH+ YA I+YQTA+ K HYP E++AA ++ M++ Sbjct: 1025 NGHDRKILEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPAEYMAAVLSNNMND 1084 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS 857 ++++ F ++ ++ ++++ P VN F V D + + + A+KGVG + I+E Sbjct: 1085 IKQVTFFMEECKRMGLEVLGPDVNESFRKFTVNDRGAVRFGMGAVKGVGANAVKTIVENR 1144 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 D P+ S+ D R+D + N++ ESL AG D F R Q + L+ Sbjct: 1145 EDGPYRSVFDLAKRIDLRAANKKAFESLALAGGFDSFMATHRAQYFKDEGDGITFLEKAV 1204 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 KY ++N + ++F + + + + E+ V+G Y SGHPLD Sbjct: 1205 KYGAKFQENENSAQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRREKEVVGIYISGHPLD 1264 Query: 970 VYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K + + + + + ++ Q + ++ G T + + + Sbjct: 1265 DFKLEMDNFCNGKISDFNNLEMHLNRELTIGGVISDVQHRVSKNGKGWAAFTVEDFDESF 1324 Query: 1028 EANFF 1032 E F Sbjct: 1325 EFRMF 1329 >gi|295112106|emb|CBL28856.1| DNA-directed DNA polymerase III (polc) [Synergistetes bacterium SGP1] Length = 1154 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 368/1049 (35%), Positives = 589/1049 (56%), Gaps = 40/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL VH+ YSLL+GA+ + K+A PA+A+TD ++ A+EF + A Sbjct: 1 MTRP--FVHLHVHTEYSLLDGAIRTKQLAAKVADWSVPAVAMTDHGVMYGAVEFYENCRA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+GC++ +D + +GK ++LL EGY+ L++LVS D Sbjct: 59 AGVKPILGCEIYVDPDGHRSREKKGKNN-----HLILLAENEEGYRNLVKLVSIANT-DG 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI L G+I + +G + + A KR L ++ + G + Sbjct: 113 FYYKPRIDHDLLASCAR-GIIASSACLAGEVPQLVLQGREDEAAKRALLYQDIMGKGNYF 171 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-S 241 + + + ++ ++++A +PL+AT+++ +L+ EDYE H +L+ + Sbjct: 172 LEIMSNTLPEQAVVNKALIRIAKDTGIPLIATSDAHYLNAEDYEWHKILLRINTHADDTD 231 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 V + +++PEAL+NTV IA RC +++ + + Sbjct: 232 DAFGFSVNDFYLRSPEEMDAIFGAEVPEALDNTVAIAERCGVEMKLKTGHYMLPSLELQE 291 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + ++ L ++A AGL +RL +Y +RL++ELNVI RM FS YFLIVA Sbjct: 292 GM--TLDSHLEDEARAGLRMRLNADTP-----PAEYAERLEYELNVITRMGFSAYFLIVA 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 IQ AK+ IP+GPGRGS AGS+ A++L IT++DPL+++LLFERFLNP+R+SMPD D D Sbjct: 345 GIIQAAKERGIPIGPGRGSAAGSLVAWSLRITELDPLKYNLLFERFLNPERISMPDIDTD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 R+++++++ +YG +RV+QIITFG ++++ A++DVGRA+ M Y+ +DR+ KLIP Sbjct: 405 VSDRGREQLLKHIVERYGSDRVSQIITFGRMKSRQAVKDVGRAVGMEYALMDRVAKLIPA 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D +A+ E DP + +L ++ +EGL RHAS HAAG+VI P++ Sbjct: 465 DARS--IREALERTPELTELAEEDPRIKNVLRTAEHIEGLARHASQHAAGVVITPVPITD 522 Query: 542 LVPMYRDVRS-----------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 LVP+ R + VTQF M+ +EK GL+K DFLGL+TL++L+++++ + Sbjct: 523 LVPIRRIKSTAPSAPDGELDVTQTVTQFTMEPVEKLGLVKMDFLGLQTLSILEEAVENIR 582 Query: 591 QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 DL +P DD TY LL T+G+FQLES G+R L ++ DC +D++A +++ Sbjct: 583 LNGKNPPDLLSLPMDDPATYKLLQEADTMGVFQLESDGIRGMLRKLRIDCFDDLVAALAM 642 Query: 650 YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 YRPGP+D+ +V Y K+G+ K+ HPL++ +LK+T GVI+YQEQVMQ A +L+GY+L Sbjct: 643 YRPGPLDSGMVDQYIKCKHGQAKLEYPHPLLEDVLKDTYGVILYQEQVMQSASVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD+LRRAMGKK E M +Q+ +F+ GA + GI + A IF+L+ KFA YGFNKSH+A Sbjct: 703 GEADLLRRAMGKKKVEVMQEQRAKFLDGARQKGIDEKTASGIFDLIEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AYA++SYQTA++K +Y EF+A+ ++ +M + + + ++ RQ I ++PP VN+ Sbjct: 763 AYALVSYQTAYLKANYKAEFMASYLSSQMKSKKDVLGHYVREVRQSGISVLPPDVNSSME 822 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 F + I + L A+ VG I++A + PF SL DF RVD +NR ++E+L+ Sbjct: 823 SFTAVGDVIRFGLGAVLRVGHNAVEAIVKAREEGPFKSLWDFLRRVDLHDMNRAMIENLI 882 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFS 944 AGA D +R +L+ +L + AQ + ++F + + L Sbjct: 883 KAGAFDEITPNRARLVAALPDFILAAQKMAAG--GDQLSLFDAIGDDSGSDPEPDLPDVE 940 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + E+ V G Y SGHP D + +RK + ++ +++S Sbjct: 941 EYGIYDKLDYEKEVTGLYISGHPFDSCEAQVRKYANCSIADLPLWRGKTAPKVGGLILSV 1000 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+KG +G + + FP Sbjct: 1001 SEKTTKKGDLMGVLLLEDSESSVSMVAFP 1029 >gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271] Length = 1485 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 333/1085 (30%), Positives = 545/1085 (50%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Q Sbjct: 255 FAHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQAHNKEAE 314 Query: 62 -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A G I+PIIGC+ +I + ++ +V+L +GY Sbjct: 315 AKNKEAEEKGETPTETLIKPIIGCEFNIC------ENHLDRSRQDNGYQVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S RI +++ ++ LI+L+GG +G + ++ AE+ Sbjct: 369 HNLTKMASIASTKG-FYYVPRIDKVIVEQYKSD-LIVLSGGMNGEVPSKILNIGTKQAEE 426 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FG+ Y+ + RH D R +V+ + + + L+ATNN+ +L ++D AH Sbjct: 427 ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 D+L+ V + N +++ ++ E I+ Sbjct: 487 DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546 Query: 289 API-------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335 P F +E +K E N LR+ G + + + Sbjct: 547 EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + R+RLDFEL++I + + GYFLIV DFI A++ N+ VGPGRGS AGS A+ L IT++ Sbjct: 600 EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + AK Sbjct: 660 DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719 Query: 456 AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501 +A++D R L +P + +RL L + + + +++ + Sbjct: 720 SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELPKVDELKRL 779 Query: 502 --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + + ++ + +EG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 780 LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618 +E AGL+K DFLGL TLTL++ +++ + Q D P DD +TY L T+ Sbjct: 840 NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P + Sbjct: 900 GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIESIEYDLPDM 959 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FI+ AS+ Sbjct: 960 EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M++ Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 ++ I F ++ + ++++PP VN F V + I + + A+KGVG I+E Sbjct: 1080 IKTITFFLEECHRMGVKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPLD Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K L+ E + +A MV Q + + G G+ T + Y Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319 Query: 1028 EANFF 1032 E F Sbjct: 1320 EFKLF 1324 >gi|257452286|ref|ZP_05617585.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317058829|ref|ZP_07923314.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684505|gb|EFS21340.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1144 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 365/1033 (35%), Positives = 588/1033 (56%), Gaps = 31/1033 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+G + + + + + + AIAITD N+F ALEF QKA G++P Sbjct: 3 DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + ++LL EGYQ L++L S YL + Sbjct: 63 IIGMEIYLS-------EYPLAEKKGRNFHLILLAENYEGYQNLMKLSSLAYL-EGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187 R+ L++ ++G+I L+ +G I + + E +L ++ +FG + Y+ +Q Sbjct: 115 RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + +PLVATN++ ++++ ++ DV++ + + +S + R Sbjct: 174 AHEEIEQQKVNEALYTFGRKMNIPLVATNDTHYVNKGEHVLQDVIVCIQTGSHLSDEKRM 233 Query: 247 RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 ++ + EAL+N+VEIA+RC + +H P + E Sbjct: 234 KIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E L+ GL R QG + +R+++EL++I +M ++GYF++V DFI Sbjct: 291 SSLEEYLKKLTYEGLGKRYPQGLD------ERIIERVEYELSIINKMGYAGYFVVVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ Sbjct: 345 SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR + + +++D+ K IP + Sbjct: 405 ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELAKIDKAAKCIPMFAS 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + ++ + D + ++ + ++E RH STHAAG++I + L++ VP Sbjct: 465 ---LKEVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + K++LS IP Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 D Y +L+ + G+FQ+ES G+R L+ +QP+ DI+AL+SLYRPGP+ + + + Sbjct: 582 QDKTVYEMLSKGDSFGVFQMESKGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK+GK+ I HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 642 IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M + + +FI + K G S+ A IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K Sbjct: 702 VEIMHENRSKFIERSIKKGYSQEKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F AA ++ E+ +++KI + DA+ ++I P V P F V ++I ++L+A Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821 Query: 842 IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK VGT + + E F S EDF R+ + LN++ LE+ ++AGALD +R + Sbjct: 822 IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 ++SLD + Y Q K + N+F K + +L + + V E E+ LG Sbjct: 882 KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRTEEYSMEVLLEKEKEFLG 940 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 FY S +PLD Y+ + + + L ++ + ++ +T+KG + + Sbjct: 941 FYVSANPLDQYESLYQSFDFDELNLIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000 Query: 1021 SEPAKEYEANFFP 1033 + FP Sbjct: 1001 ENYQGQIPMVIFP 1013 >gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8] gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8] Length = 1160 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 427/1039 (41%), Positives = 624/1039 (60%), Gaps = 32/1039 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 SPSFVHL+ HS YS+++G + +++ + + +D+ PA+A+TD +NLF A++F + A Sbjct: 9 PASPSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGK 68 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIGC + ++ +N ++ ++LL + GY L L+SR YL +Q Sbjct: 69 GVKPIIGCDIWLENTENRELP----------SRLLLLCQSHTGYLTLCHLLSRAYLTNQY 118 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + +W E GTEGL++L+GG +G + +A + +A+K +++LF +R Y+ Sbjct: 119 RGRAEFKRAWFAEAGTEGLLLLSGGLAGDVGQACAQGNVVLAKKLANEWQQLFPERFYLE 178 Query: 186 LQR-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +QR + + V +A+ LP+VAT+ F S +DY AH+ +A V+ Sbjct: 179 VQRIATDAGKASEEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVL 238 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + K RP+ T + Y K ++++ ++F+D+PEAL N+VEIA+RC+ L + LP+F Sbjct: 239 ADKRRPQNFTTEQYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPN 298 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + +E R +A L + Y RLDFE NVI +M F+GYFLI Sbjct: 299 NESLNDYLISEAR-LGLAKRLEVLFPNEEVRASKQDVYAARLDFETNVINQMGFAGYFLI 357 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPDFD Sbjct: 358 VADFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDFD 417 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLI Sbjct: 418 IDFCQEGRDRVIDYVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLI 477 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P + +S A+ + + E R + V LLE++ +LEGL R+ HA G++I + Sbjct: 478 PLELGITLS-DALEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSKI 536 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y V+Q++ +E GL+KFDFLGL+TLT+L +L+ ++ + +L Sbjct: 537 ADFSPVYCQPDGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAERELP 596 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +P DD T+ LL T T +FQLES GM+ L+ PDC EDIIALV+LYRPGP Sbjct: 597 PLFFETLPIDDKPTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPGP 656 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I Y RK+GK+++ HPL +P+LKET G+ +YQEQVMQIAQ+++GYSL AD+LR Sbjct: 657 MDLIPDYCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLR 716 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK KEEMD Q++ F GA+KN +++ A ++F+LL KFA YGFNKSHAAAYA+++Y Sbjct: 717 RAMGKKKKEEMDAQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVAY 776 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833 TA++KTHYP FLAA+M+ +M+N + + F D ++++PP VN FK V N Sbjct: 777 HTAYLKTHYPAAFLAATMSADMNNTDSVHIFYDDCAPNQVEVLPPDVNESEFKFKPVSKN 836 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I Y L A+KG G+ I++A D PF SL DFCSR+D +K+NRRV+ESL+ AGA D Sbjct: 837 QILYGLGAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAFD 896 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 +R LL + A+ N + ++F L + R Sbjct: 897 KLEPNRHALLAGVALAISAAEQT--NANSNQNSLFGEASDQSVH--VLPNVTPWPEQQRL 952 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LGFYFSGHP Y+ L + + LA +V + + T +G Sbjct: 953 QEEKIALGFYFSGHPYWSYQKDLSQFISTTLANL--APKEQPQLLAGIVSGVRVRMTARG 1010 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 + V + E Sbjct: 1011 K-MAIVGLDDGTTRIEVVV 1028 >gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1] Length = 1460 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 357/1091 (32%), Positives = 556/1091 (50%), Gaps = 77/1091 (7%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---- 58 + L+ +P F HL HS +S+L+ S+++++ +A+TD N+ A F Sbjct: 255 EALKNAP-FSHLHNHSQFSVLQSTSSISDLVKAAGKYNMQGVALTDHANMMGAFHFVKEV 313 Query: 59 --SQKACAAGI---------------QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 K+ A I +PIIGC+ + ++ KT IVL Sbjct: 314 SNYNKSIKAKIAEAEATGEAIDAQILKPIIGCEFFVC------ENHEDKTRKDNGYQIVL 367 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L GY L ++ S Y RI + +++ E +I+LTG G + Sbjct: 368 LAKNKNGYHNLAKMSSIAYTKG-FYYVPRIDKNVIEQY-KEDVIVLTGNLYGEVPNKVLN 425 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220 AE+ LL +K+ F D LYV + RH D R +V+LA HE+ LVATNNS ++ Sbjct: 426 IGESQAEEALLWWKETFQDDLYVEIMRHNQEDENRVNEVLVRLAKKHEVKLVATNNSYYI 485 Query: 221 SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273 ++ED AHDVL+ V + ++Y K+ EM ++F DLP+A+ + Sbjct: 486 AQEDATAHDVLLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSPDEMKTLFKDLPDAILS 545 Query: 274 TVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 EI + P +F E + D ++ E LR+ G + Sbjct: 546 IQEIVDKVEPFELARDVLLPAFDIPEEFQFEEDKIDGGKRGENKYLRHLTYEGAKK---- 601 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 G + +RLDFEL I + GYFLIV DFI+ A+ ++ VGPGRGS AGSV Sbjct: 602 ---RYGEITPEIEERLDFELGTIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSV 658 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV +KYG +VAQ Sbjct: 659 VAYCLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQ 718 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------------DPAHPVSLQAIA 493 IIT+G++ AK+++RD R L +P S+ DR+ KLIPN + + + Sbjct: 719 IITYGTMAAKSSIRDTARVLDLPLSEADRIAKLIPNTKLAKIFGKSEAELKQKFRSEEVL 778 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + D + +++ LEG R+ HA G++I +++ VP+ SD+ Sbjct: 779 LINELINISEEDGLAAETVNMARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDM 838 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612 TQF+ +E AGL+K DFLGLKTLTL++ ++ + + V +D+ IP DD ETY L Sbjct: 839 YCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHDVDIDIENIPLDDEETYALF 898 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G+E I Sbjct: 899 QRGETVGVFQYESPGMQKHMKSLKPTTFADLIAMNALYRPGPMEYIPSFIRRKHGEEDIE 958 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 L+ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K +DK K +F Sbjct: 959 YDLDACQEYLEETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKF 1018 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 IS AS G ++ I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA + Sbjct: 1019 ISQASAKGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1078 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851 + M++++ I F ++ ++ + ++ P VN F V D + + + AIKGVG + Sbjct: 1079 SNNMNDIKTITFFMEECKRMKLDVLGPDVNESFYKFTVNDEGAVRFGMGAIKGVGHGAVK 1138 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904 I++ ++ + S+ D R+D + N++ E+L AG D FG R Q + Sbjct: 1139 TIVKERSEGKYKSVFDLAKRIDLRAANKKAFENLALAGGFDSFGDTHRAQYFHTENDGIT 1198 Query: 905 -LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L+ KY ++N+ + ++F ++ + + + E+ V+G Y Sbjct: 1199 FLEKAVKYGAKFQENKNSAQVSLFGEASEVQIEEPKVPPCEEWGTMEKLAREKEVVGIYI 1258 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 SGHPLD +K ++ I A +V Q + ++ G T Sbjct: 1259 SGHPLDDFKAEMKFFCKGDLSYFSRMEEYVNREIPFAGVVTEVQHRVSKNGKGWALFTVE 1318 Query: 1022 EPAKEYEANFF 1032 + ++ YE F Sbjct: 1319 DYSESYEFRIF 1329 >gi|304389308|ref|ZP_07371273.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327426|gb|EFL94659.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1225 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ Sbjct: 1 MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 AGI+PIIG + + + + + LL T EG Sbjct: 60 AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S L Q + R L+ EGLI G SG + Q A + Sbjct: 120 LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG D YV L H + +++LA P++ATN+S ++ +ED E D Sbjct: 179 GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + +S DR R Y EM +F+++PEAL+NT+ IA +C+ Sbjct: 239 AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + ++E + + GL+ R G +++ R+R D+E+ +I Sbjct: 299 KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S+ ++L K +P + + FR+ DP ++ +++ +E Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLGLK L Sbjct: 531 GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL + DD TY LL+T TLG+FQL+ GMR L+ ++P Sbjct: 591 TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK T G+IIYQ Sbjct: 651 EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ ++ + Sbjct: 711 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 771 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN F N I + LA+I+ VG I++A + + S DF + Sbjct: 830 GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R + SL+ AGA D FG R L + + ++ +N ++FA + Sbjct: 890 VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949 Query: 932 GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ + S + E+ +LG Y S HPL +L + Sbjct: 950 MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009 Query: 983 YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + + +++A +V + K +++ G + + E FF Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063 >gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134] Length = 1403 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 365/1049 (34%), Positives = 563/1049 (53%), Gaps = 41/1049 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS +S+L+ S+ ++ PAIA TD N+ +A + + ++ I Sbjct: 240 FSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKVI 299 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+ + + T K+ + VLL E Y RL +L S Y+ R Sbjct: 300 IGCEFYVAQE--RTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFPR 357 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I ++E EGLI LTG G I AE+ + LFGD YV + RH Sbjct: 358 IGKDLIEEYH-EGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRHG 416 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246 + R +++ A + + +ATNN ++ +ED +AHD L+ V + S Sbjct: 417 QEEEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTPD 476 Query: 247 ---------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++Y+K EM +FSD+P ALE T EI +CS I ++P + Sbjct: 477 IKRRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVYEM 536 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 +++ LR+ G G ++ R+RLD ELN+I M F GYF Sbjct: 537 PSEF---ATQDDYLRHLTYEGATK-------RYGEITEEIRERLDHELNIIKSMGFPGYF 586 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI A+ + VGPGRGS AGS A+ + IT+IDP++++LLFERFLNP+R+SMPD Sbjct: 587 LIVQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMPD 646 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF + R + I YV +KYG +VAQIIT+G++ AK A++DV R L++P ++L K Sbjct: 647 VDIDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLAK 706 Query: 478 LIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +P+ P + + + AR +++L ++ LEG R HAAG++I Sbjct: 707 YVPDKPGTKLKDAFAEVQELKDVLARPEGDLENQVLRQAKILEGSVRGTGIHAAGVIIAP 766 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-K 595 L + +P+ +DL VTQF+ K IE AG++K DFLGLKTLT+++ +L + + Sbjct: 767 DDLLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIKKNYDID 826 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD T L T+G FQ ES GMR L+ ++P IED+IA+ +LYRPGP+ Sbjct: 827 IDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPGPL 886 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G E++ H L++P+L T G+++YQEQ+MQ AQ+L GYSL AD+LRR Sbjct: 887 QFIPNFINRKHGTEEVEYPHDLLEPILNNTYGIMVYQEQIMQTAQILGGYSLGGADLLRR 946 Query: 716 AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AMGKK EEMD+Q+ F+ GA + +GI + + +FE++ +FA YGFN+SH+AAY+V++Y Sbjct: 947 AMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSHSAAYSVVAY 1006 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTA++K +YP E++A+ +T M+N++K+ F + + +QI+ P VN F V Sbjct: 1007 QTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESEQSFTVNPVG 1066 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I + L A+KG G +I+E + PF + DF RV+ + +N++ E AGA D Sbjct: 1067 QIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFECFAQAGAFD 1126 Query: 893 CFG-YSRMQLLQS--------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 G R Q + L+ I K+ +K N ++F + + Sbjct: 1127 NLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASGAVTIAQPKVPYT 1186 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + E+ V+GFY SGHPLD Y+ ++K G ++ + + +A +V Sbjct: 1187 EPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKFGAVALDKIESFQH-QEVTVACIVTK 1245 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K+ ++T+ G + + + + F Sbjct: 1246 KELRQTKNGKPFTSFSIEDYSTSMDLALF 1274 >gi|330817862|ref|YP_004361567.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] Length = 1179 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 403/1045 (38%), Positives = 602/1045 (57%), Gaps = 39/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++++ AAD Q A+A+TD N F + F Q+A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGVKPIAGCDVWITNHDDRDKP----------SRLLLLVRDKAGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + WL+ +GL+ L+G G I A +++ A + + ++F Y+ Sbjct: 110 YRGRAEVDAQWLESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ + +LA +LP+VAT+ F+ +ED+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGGEAYVQEAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + ++EM +F+D+P A++NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTIEQRFRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE RL Q + Y QRL+FE N I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---K 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + F+ + Sbjct: 526 LTDFCPLYAQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831 TAW+K H+P EF+AA+MTL MD+ +K+K D ++++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEAD 825 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I Y L A+KG G I+ A + F L DFC R+D + +NRR +E+L+ Sbjct: 826 GKRSKTIRYGLGAVKGSGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIR 885 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D +R QL+ S+ + A E N +F + L + Sbjct: 886 AGAFDVLTPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWD 942 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R + E+ LGFY SGH D Y+ +R+ E +A ++ S + + Sbjct: 943 EKRRLQEEKGALGFYLSGHLFDAYREEVRRFARMKLGELKEGRDK---LVAGVIASLRTQ 999 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 MTQRGK-MIIALLDDGTGQCEITVF 1023 >gi|159900372|ref|YP_001546619.1| DNA polymerase III subunit alpha [Herpetosiphon aurantiacus ATCC 23779] gi|159893411|gb|ABX06491.1| DNA polymerase III, alpha subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 1296 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 353/1057 (33%), Positives = 542/1057 (51%), Gaps = 48/1057 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G + I ++ A Q +IAITD ++ A+EF A A ++P Sbjct: 3 DFVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + I N +G ++L+ GY+ L++L SR +L GK Sbjct: 63 IIGMEAYIAPNSNKDPMVKGGK---NYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L++ EGLI+ + +G + + Q A + + F+ LFG + ++ Sbjct: 120 ARPRIDRQLLEQYH-EGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIE 178 Query: 186 LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---V 240 LQ H ++V++A +PLVATN++ F+ ED + H +MA+ + + Sbjct: 179 LQLHNNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQEL 238 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+ H + +ENT IA C+ L LP F E Sbjct: 239 CSKNYQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G ++Y QRL +EL+VI + F Y LIV Sbjct: 299 HD----AASYLRLICEEGLIKRC------NGNPTEEYVQRLSYELDVINQTGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ N IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MPD D Sbjct: 349 WDYVKFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDT 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR E++ Y+ KYG E VAQIIT+G+L AKAALRD+GR L +P S+VDR+ KLIP Sbjct: 408 DFADARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P +++ ++ DP + L++ +QK+EG + THA G+V+ PL Sbjct: 468 TLPVGMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLE 527 Query: 541 QLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 +VP+ R + + V F + K GL+K D LGL L++ ++L + Q + L Sbjct: 528 NMVPLQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKTMWL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 S IP DD +T+ L T+ +FQLES+GM + L ++P ++D+ +V+LYRPGP++ I Sbjct: 588 SDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY + KN I IHP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L EA ++ +A+ Sbjct: 648 PVYIHNKNNPHAIKYIHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE M + RF G + G+++ A ++EL+ FA Y FN+ H+ Y ++SYQTAW Sbjct: 708 KKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832 +K +YP E++ A+++ ++++ K +A + + + PP VN F + D Sbjct: 768 LKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVDIAGELP 827 Query: 833 ------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + L+AI+ VG + I++ PF S+EDFC+RVD LN+RV+ESL Sbjct: 828 EGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNKRVMESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFS 944 V GA+D +R Q L LD +K R ++F G T+ Sbjct: 888 VKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTPTISPIP 947 Query: 945 VENSS-------VRFENEQRVLGFYFSGHPLDV-YKPILRKMGIKGYEESVATIRGNNIR 996 ++ E+ +LG Y S HP+ G G IR Sbjct: 948 FPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKHIGTTIR 1007 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 L M+ + ++ +T+KG + + E E FP Sbjct: 1008 LIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFP 1044 >gi|315656561|ref|ZP_07909448.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492516|gb|EFU82120.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1226 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ Sbjct: 1 MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 AGI+PIIG + + + + + LL T EG Sbjct: 60 AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S L Q + R L+ EGLI G SG + Q A + Sbjct: 120 LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG D YV L H + +++LA P++ATN+S ++ +ED E D Sbjct: 179 GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + +S DR R Y EM +F+++PEAL+NT+ IA +C+ Sbjct: 239 AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + ++E + + GL+ R G +++ R+R D+E+ +I Sbjct: 299 KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S+ ++L K +P + + FR+ DP ++ +++ +E Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLGLK L Sbjct: 531 GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL + DD TY LL+T TLG+FQL+ GMR L+ ++P Sbjct: 591 TIISDALDNIKINGNTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK T G+IIYQ Sbjct: 651 EFDDISALVALYRPGPMGANSHTNYALRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ ++ + Sbjct: 711 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 771 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN F N I + LA+I+ VG I++A + + S DF + Sbjct: 830 GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R + SL+ AGA D FG R L + + ++ +N ++FA + Sbjct: 890 VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949 Query: 932 GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ + S + E+ +LG Y S HPL +L + Sbjct: 950 MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009 Query: 983 YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + + +++A +V + K +++ G + + E FF Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063 >gi|308235821|ref|ZP_07666558.1| DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14018] gi|311114403|ref|YP_003985624.1| DNA-directed DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14019] gi|310945897|gb|ADP38601.1| DNA-directed DNA polymerase III alpha subunit [Gardnerella vaginalis ATCC 14019] Length = 1183 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 340/1062 (32%), Positives = 544/1062 (51%), Gaps = 50/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+PI Sbjct: 8 FVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + + EG L++ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNLLKASSIA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKDVLSRY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++++A PL+ATN+ ++ EED EA D ++ + Sbjct: 187 RDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 247 SRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQ 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R + ++ D+E VI +M+F GY Sbjct: 307 FDCPEG--WDETSLFLKKVEEGLERRYNNNV------PMEVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478 Query: 477 K-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAST 527 K L P +S I D+ FRE DP R+ E ++ +EGL R Sbjct: 479 KILPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQTGV 538 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA ++G P++ P+ + T F E GL+K DFLGL LT+++ +L Sbjct: 539 HACATIMGSEPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLK 597 Query: 588 FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + +D + IP DD ETY LL TLG+FQL+S GMR L ++PD DI AL Sbjct: 598 NVEHNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFNDISAL 657 Query: 647 VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQ 700 ++LYRPGP+D Y RKNG ++I IHP + +L ET G+I+YQEQV A+ Sbjct: 658 IALYRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQSAAR 717 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 +L+GYSL +ADVLRRAMGKK E + K+K F G ++G S+ A ++++L F+ Y Sbjct: 718 ILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPFSGYA 777 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ I+++ P Sbjct: 778 FNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRVLQPD 837 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDSKKLN 878 +N +++ + + + L A++ VG I+ F +DF +RV LN Sbjct: 838 INESVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSFAALN 897 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTF 934 RR++ESL+ +GA D R + + + + +++ + ++FA + Sbjct: 898 RRLVESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSDSDLG 957 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991 +I + + + E+ +LG Y S HPL +L + + + + Sbjct: 958 DAQINIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRAKTMG 1017 Query: 992 -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA +V S ++ ++KG+ VT + + FF Sbjct: 1018 ENQQVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFF 1059 >gi|315655526|ref|ZP_07908425.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii ATCC 51333] gi|315490181|gb|EFU79807.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii ATCC 51333] Length = 1225 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA + ++ K +QQ A+AITD LF A EF Q+ Sbjct: 1 MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59 Query: 65 AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 AGI+PIIG + + + + + LL T EG Sbjct: 60 AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSYTTEGMHN 119 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S L Q + R L+ EGLI G SG + Q A + Sbjct: 120 LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG D YV L H + +++LA P++ATN+S ++ +ED E D Sbjct: 179 GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQD 238 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++ + +S DR R Y EM +F+++PEAL+NT+ IA +C+ Sbjct: 239 AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + ++E + + GL+ R G +++ R+R D+E+ +I Sbjct: 299 KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M F YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++ LLFERFL Sbjct: 351 VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D+DF RR +VI YV KYG ++V+Q++T+G++++K AL+D R Sbjct: 411 NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470 Query: 469 YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S+ ++L K +P + + FR+ DP ++ +++ +E Sbjct: 471 FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +++ L+ ++PM + + +TQF+ E GL+K DFLGLK L Sbjct: 531 GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +LD + DL + DD TY LL+T TLG+FQL+ GMR L+ ++P Sbjct: 591 TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 +DI ALV+LYRPGP+ ++ Y RKNG +KI IH ++ LK T G+IIYQ Sbjct: 651 EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHRELEEPLKDILGYTYGLIIYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ +F G ++G S+ ++ + Sbjct: 711 EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEECCETLWGI 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T + + +K+ + + R+ Sbjct: 771 LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN F N I + LA+I+ VG I++A + + S DF + Sbjct: 830 GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V ++ N+R + SL+ AGA D FG R L + + ++ +N ++FA + Sbjct: 890 VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949 Query: 932 GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ + S + E+ +LG Y S HPL +L + Sbjct: 950 MEGTESPDNLLGSPSIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009 Query: 983 YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + + +++A +V + K +++ G + + E FF Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063 >gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147] Length = 1105 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 411/1044 (39%), Positives = 601/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + SWL+ EGL+ L+G G I A + A + + K F Y+ Sbjct: 110 YRGRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ Q V +A +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T D + + + +M ++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG++ A IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D + ++ P +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEITVF 1022 >gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1181 Score = 735 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 413/1056 (39%), Positives = 600/1056 (56%), Gaps = 57/1056 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + + D QPA+AITD +NLF A++F ++A G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I+ + T I+LL +GY L E+++R + + K Sbjct: 62 LGAEVSIEPE----------TAGNPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPL 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WL+E+G + LI L+G +GP+ +AF A + L LF R Y+ LQR Sbjct: 112 CTWEWLEELGGD-LIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAG 170 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D + VQLA LP+VAT + FL+ +DYEAH+ + +A +++ R R Sbjct: 171 RPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M ++F+D+P A+ NT+EIARRCS L + P LP F I + Sbjct: 231 TREQYFKSSAQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPI----D 286 Query: 309 NELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GLE L + + Y +RL+FELN I +M F GYFLIV DFIQ Sbjct: 287 EYFRYASFEGLEERLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQ 346 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 347 WAKENGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 406 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYG V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 407 NRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGM 466 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + A+ + E + V ++E++QKLEG+ R+ HA G Sbjct: 467 SYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGG 526 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 527 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK 586 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD TY L + T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 587 RHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 646 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 647 LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 706 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + +E F GA++ GI + A +F+L+ KFA YGFNKSHAAA Sbjct: 707 GADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAA 766 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP VN F Sbjct: 767 YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRF 826 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877 + V D I Y L A+KG G I+ A PF SL DFC+RVD +L Sbjct: 827 EPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRL 886 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R LE+L+ AGA D +R L+ S+D +A + N +F G+ Sbjct: 887 NKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIAN--ANQGGLFDMMGDDSHGS 944 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + R E+ +GFY SGH D + +R+ EE + Sbjct: 945 STQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQ 1004 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 +A +V + ++G R+ + + EA Sbjct: 1005 --IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1037 >gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1485 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 352/1086 (32%), Positives = 552/1086 (50%), Gaps = 75/1086 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61 +S F HL HS +S+L+ S+ +++ A + PA+A+TD N+ A F+++ Sbjct: 252 QSAPFAHLHNHSQHSVLQSTASIADLVTAAAKENMPAVALTDHGNMMGAFHFTKEVAKHN 311 Query: 62 --ACAAG--------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 A A I+PIIGC+ I + KT +VLL Sbjct: 312 KEAKAKNAKLEEEGKPATHTLIKPIIGCEFYIC------ENHLDKTKKDNGYQVVLLAKN 365 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 +GYQ LI++ S Y + RI +++ + LI+L+G G I ++ Sbjct: 366 KDGYQNLIKMASIAYT-EGFYYVPRIDKGIVEQY-KDQLIVLSGNLQGEIPSKILNLGNR 423 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ LL +K+ F + Y+ L RH + R + +++LA H + LVATNN+ ++S +D Sbjct: 424 QAEEALLWWKEHFQEDFYIELMRHGQENENRANAVLIELAKKHGVKLVATNNTYYISPQD 483 Query: 225 YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V + ++Y K+ +M +F D+PEA+ + EI Sbjct: 484 ANAHDILLCVKDGEKQATTIGQGRGFRNGLPNEEYYFKSSQQMKELFKDIPEAILSIKEI 543 Query: 278 ARRCSFILQVHAPILPRFIEKEC------DDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331 + + +LP+F + +K E LR+ G + Sbjct: 544 IDKITPYELARNILLPKFSIPKEFQMEGDPTGKKGENKYLRHLTYLGAKK-------RYK 596 Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + R+RLDFEL++I + + GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 597 ELTNEVRERLDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYCLG 656 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT+IDP+++ LLFERFLNPDR+SMPD DIDF D R V+ YV KYG +VAQI T+G+ Sbjct: 657 ITNIDPIKYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIATYGT 716 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-----------FRE 500 + AK+++RD R L +P + D++ KLIPN + + ++ Sbjct: 717 MAAKSSIRDTARVLDLPLKEADQIAKLIPNISLKKIFSLTDEELKEKVGSDLPKIDKLKK 776 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 + ++ + LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 777 IAEGHDLSAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDLFVTQFDN 836 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E AGL+K DFLGLKTLT+L+ ++ + +R D+ IP DD TY L T+G Sbjct: 837 SVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHGFELDIDHIPLDDKPTYALFQRGETIG 896 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ + ++P D+IA+ +LYRPGP+D I + +RK G E I ++ Sbjct: 897 IFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPMDYIPSFIHRKQGIEPITYDLADME 956 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LK+T G+ +YQEQVM ++Q L+G++ EAD LR+AMGKK+K+ + + K +FI G K Sbjct: 957 EYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKFIEGGGKK 1016 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+AA ++ M+++ Sbjct: 1017 GHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVLSNNMNDI 1076 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858 + I F + + I+++ P VN F V + I + + A+KG+G I+E Sbjct: 1077 KSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVDTIVETRK 1136 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909 + S+ D R+D K N++ ESL AG D F R Q L+ I Sbjct: 1137 SGAYQSIFDMVKRIDLKSANKKAFESLALAGGFDSFPEVHRAQFFHQEPSENMVFLEKIL 1196 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +Y +++ + ++F T + + + + E+ V+G Y SGHPLD Sbjct: 1197 RYGAKAQESAKSIQLSLFGDSPETQIPEPKMPYTEEWSPMEKLRREKEVVGIYISGHPLD 1256 Query: 970 VYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 ++K L+ + K E + G +R ++ + K ++ G G T + + Sbjct: 1257 IFKYQLQYLCNKEVIELSGGLEGLENQVVRFGGIITKTEHKTSKTGKGWGIFTIEDYSGV 1316 Query: 1027 YEANFF 1032 E F Sbjct: 1317 AEFRIF 1322 >gi|291457517|ref|ZP_06596907.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213] gi|291381352|gb|EFE88870.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213] Length = 1185 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 342/1064 (32%), Positives = 537/1064 (50%), Gaps = 52/1064 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L H+ YSLL+GA + ++ + A + PA+ ITD N+ A E A G++PI Sbjct: 8 FVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67 Query: 71 IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IG + + + + + + + EG LI+ S Sbjct: 68 IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 L + + R+ L ++G+I +G SG I A + F+ +FG Sbjct: 128 NLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186 Query: 180 -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 D ++ L H + ++ +A + PL+ATN+S ++ ED A D ++ + Sbjct: 187 KDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSG 246 Query: 238 TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + + DR + +Y+K EM +F D P+A +NT+ IA RC+ + H Sbjct: 247 SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMPQ 306 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + +E + K GLE R G + ++ D+E VI +M+F GY Sbjct: 307 FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLNVLKQADYECGVICQMQFCGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+ L+FERFLNP+R+S+P Sbjct: 359 FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF + R VI Y KYG ++VAQ + +G+++ K AL+D R + +S +++ Sbjct: 419 DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478 Query: 477 KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P +SL I D S FRE +DP R+ E ++ +EGL R Sbjct: 479 KALPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIRQTG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA ++G P++ P+ + T F E GL+K DFLGL LT++ +L Sbjct: 539 VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIHDTL 597 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +D + IP DD ETY L+ TLG+FQL+S GMR L+ ++PD DI A Sbjct: 598 KNIEANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 L++LYRPGP+ Y RKNG +KI IHP ++ LK+ T G+IIYQEQV A Sbjct: 658 LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A ++++L F+ Y Sbjct: 718 RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILVPFSGY 777 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ IQ++ P Sbjct: 778 AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877 VN + + + + L AI+ VG I+ F + DF RV L Sbjct: 838 DVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR++ESL+ AGA D +R L + +++ + ++F+ ++ Sbjct: 898 NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDADDGGAEA 957 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991 +T+ + + E+ +LG Y S HPL + IL + + + Sbjct: 958 MGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLIDRAKT 1017 Query: 992 ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + LA ++ ++ ++KG+ VT + + FF Sbjct: 1018 MGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061 >gi|283456439|ref|YP_003361003.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] gi|283103073|gb|ADB10179.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1] Length = 1188 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 335/1072 (31%), Positives = 541/1072 (50%), Gaps = 63/1072 (5%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L H+ YSLL+GA + +++ + PA+ ITD N+ A E A AGI+PIIG Sbjct: 3 LHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPIIGI 62 Query: 74 QLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 + + + ++ K + + + + T EG L Sbjct: 63 EAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLVNL 122 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ + L + + R+ L + ++G+I +G SG I A + Sbjct: 123 MKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQFDEALRAAG 181 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 + +FG D Y+ H +R ++ +A PL+ATN+S ++ ED A D Sbjct: 182 ELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQDA 241 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 ++ + + + + R + +YLK+ EM +F DLPEA +NT+EIA RC+ + H Sbjct: 242 MLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDDHE 301 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + +E + K GLE R G + ++ D+E VI Sbjct: 302 DGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPIEVLKQADYECGVIC 353 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLN Sbjct: 354 QMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERFLN 413 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+S+PD D+DF D R V+ YV KYG ++VAQ + +G+++ K AL+D R + + Sbjct: 414 PERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGFDF 473 Query: 470 SQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519 S +R+ K +P + L I D + FRE +DP R+ + + +E Sbjct: 474 SMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMGIE 533 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HA ++G P++ P+ + T E GL+K DFLGL L Sbjct: 534 GLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVKMDFLGLSNL 592 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T+++ +L+ + ++D + IP DD TY LL+ TLG+FQL+S GMR L+ ++P Sbjct: 593 TVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLKPS 652 Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692 DI AL++LYRPGP+D Y RKNG +KI IHP + +L ET G+I+YQ Sbjct: 653 NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQ 712 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV A++L+GYSL +ADVLRRAMGKK E + K+K F +G ++G S+ A ++++ Sbjct: 713 EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVWDI 772 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + N +K + +AR+ Sbjct: 773 LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRM 832 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCS 870 IQ++ P VN ++ + + + L AI+ VG I++ + + DF Sbjct: 833 GIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDFVR 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 RV LNRR++ESL+ AGA D +R L + +++ + ++F+ Sbjct: 893 RVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFSDL 952 Query: 931 KGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 + +++ + + E+ +LG Y S HPL + +L + Sbjct: 953 DDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMSIA 1012 Query: 985 ESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + +A ++ + ++ ++KG+ VT + + FF Sbjct: 1013 HLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFF 1064 >gi|149177980|ref|ZP_01856577.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797] gi|148843173|gb|EDL57539.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797] Length = 1154 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 357/1027 (34%), Positives = 561/1027 (54%), Gaps = 32/1027 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+GA + ++ K+ ++AITD NL+ A++F Q + + PI+G + I + Sbjct: 1 MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + LL +G++ LI+L S YL + RI L E + Sbjct: 61 RFEKGAS--RMKEASFHLTLLAQNRQGFENLIKLSSASYL-EGFYYKPRIDKEIL-EAHS 116 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200 EGLI+LTG ++G + + AEK ++K+FGDR+Y+ +Q R Sbjct: 117 EGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGT 176 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSE 259 V LA LPLVATN++ ++ ++D EA DVL+ V+ VVS + R ++T +++ + E Sbjct: 177 VDLANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDE 236 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M + F L +A+ T E+A R +F + LR L Sbjct: 237 MYNAFPGLEDAVARTQELAERV-----DIQMSDKKFYPVFQPPDNLTDTQYLRKLCEERL 291 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 ++ Q + RLD EL VI +M +S YFLIV DF+Q+A+ IP RG Sbjct: 292 PIKYGD------ELTQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIP-CTARG 344 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S G++ A+ L ++ + PL++ LLFERFL+P R PD DIDFC+DRR VI Y + KYG Sbjct: 345 SACGAIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYG 404 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 + VAQI TFG+L+AKAA+RDVGRAL +P ++V+ + K+IP + + + + Sbjct: 405 EKSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLKDA-LKESPDLQ 463 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 A D + RLL+++ +LEGL R A THAAG+V+ D PLS++VP+ +TQ++ Sbjct: 464 SAYDQDSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWD 523 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 +E GL+K DFLGL+ LT+L K++ RG+ ++ +P DD ET+ LL T Sbjct: 524 GPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINPHKLPLDDQETFELLQRGETK 583 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP 676 GIFQLES GMR L M+PD EDIIA +LYRPGP++ +V + KN + I +HP Sbjct: 584 GIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPIPKVHP 643 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 ++D +L ET GV++YQEQVM+I + G LS A +A+ KK + + +++++ GA Sbjct: 644 IVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQYLEGA 703 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 K+G+ +A ++FE++ KFA YGFNKSH+ AY ++Y TA++K HYP EF+AA ++ M Sbjct: 704 KKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSCGM 763 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856 ++ E+I + D R+ I+++PP +N V+F V +I + + AIKGVG +++ Sbjct: 764 ESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEKIRFGMGAIKGVGEQVLEAVVKE 823 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 + PF SL + C RVD K LN+ LE+L+ AGAL+ G ++ QL+ +++ + A + Sbjct: 824 REENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQSALNI 883 Query: 916 EKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++R +++F E+ ++ +L + + + E+ V GFY + HPL Sbjct: 884 HRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSHPLAEM 943 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ----QKKTRKGS-RIGWVTFSEPAKE 1026 L K E + LA MV S + +K ++ G+ R +P Sbjct: 944 GTSLTKYAQNQTNELAEMDDRVEVILAGMVSSIKMAATKKPSKNGNTRYVNFDLEDPHGL 1003 Query: 1027 YEANFFP 1033 +P Sbjct: 1004 VRCIMWP 1010 >gi|260906536|ref|ZP_05914858.1| DNA polymerase III subunit alpha [Brevibacterium linens BL2] Length = 1185 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 377/1074 (35%), Positives = 566/1074 (52%), Gaps = 58/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL VH+ YS+L+GA L +++ A AIA TD LF A +F +A A Sbjct: 1 MPKD-DFVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATA 59 Query: 65 AGIQPIIGCQLDIDMQDNLK------------MTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 AGI+PIIG + + + + + + LL G + L Sbjct: 60 AGIKPIIGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNL 119 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 + S L + RI L+ +EGLI TG SG I + A Sbjct: 120 FKASSYASLDSVFSKWPRIDQDLLETY-SEGLIATTGCPSGEIQVRLRLGQYEEARAAAG 178 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FG D YV L H ++ +++L+ ++PLVATN+ + E D +AH+ Sbjct: 179 KYREMFGKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDIPLVATNDLHYTHESDAKAHEA 238 Query: 231 LMAVAHSTVVSQKDRPRVTPD-------HYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 L+A+ + + + + +YLK+ +EM ++FS+ PEA +NT+EIA +C Sbjct: 239 LLAIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALFSEFPEACDNTLEIAEKCEV 298 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 A +P+F +D E + L + GLE R G D R++ D+ Sbjct: 299 SFDTSANYMPKFPCPPGED----ETSWLVKEVQTGLEYRYPGG------IPDDVRKQADY 348 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL+VI M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L Sbjct: 349 ELDVIISMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLF 408 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 409 FERFLNPDRVSMPDFDVDFDDRRRGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSAR 468 Query: 464 ALQMPYSQVDRLCKL-IPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEI 514 L P+S +RL K P + A + L I + FRE +DP E Sbjct: 469 VLGKPFSMGERLTKALPPAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFET 528 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ +EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFL Sbjct: 529 AKGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 588 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +++ + R + L + DD Y LL+ TLG+FQL+ G+R L Sbjct: 589 GLRNLTIISDAVENIKANRDYDLGLEHLDLDDRGAYDLLSRGDTLGVFQLDGGGLRALLR 648 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A ++LYRPGP+ D+ + RKNG +++ IHP ++ L++ T G Sbjct: 649 LMKPDNFEDISATIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYG 708 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +IIYQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+ F G + G S+ A Sbjct: 709 LIIYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGGMKERGYSEAAAQ 768 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY ++SY TA++K HY E++AA +T DN +K+ + Sbjct: 769 ALWDILLPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLN 828 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 + R+ I ++PP VN + F I + + A++ VG I+EA + S Sbjct: 829 ECRRLGITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFT 888 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +V S N+R +ESL+ AG D G +R L++ + V++ N ++ Sbjct: 889 DFLDKVPSHVCNKRTIESLIKAGGFDSLGQTRRSLVEVHEEAVDSVIGVKRQEANGQFDL 948 Query: 927 FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 FA G + + + + E+ ++G Y S HPL+ + +L Sbjct: 949 FAGLGGDDDEPSFSVAIPDRPEWEKKEKLAFERDMIGLYVSDHPLNGLEGVLAAESEASI 1008 Query: 984 EESVA----TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 E V G+ +++ M+ +K ++ G VT + E E FF Sbjct: 1009 AEVVDPESHRHDGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMFF 1062 >gi|297194911|ref|ZP_06912309.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC 25486] gi|197723064|gb|EDY66972.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC 25486] Length = 1179 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 331/1068 (30%), Positives = 534/1068 (50%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFEACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + A G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + ++GLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SQGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAQQVDTEGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + D E + + + G+E R G +D ++++++E++VI +M Sbjct: 298 AKNLMPKFDIPEGHTEVTWFKEEVMRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAIKMVKSNKGIDLEMLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN +++I IHP ++ L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLREVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F GA + G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQKGAREKGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I++ + S DF +V+ Sbjct: 832 VLPPNVNESMSNFAAQGDDVILFGLTAVRNVGQNVVESIIKTRKAKGKYSSFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 SD+ + S E+ +LG Y S HPL + +L + Sbjct: 952 ASDEPGFGLDVEFSDV-EWDKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] Length = 1189 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 407/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F Q+A Sbjct: 1 MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++PI GC + I D+ ++LLV GY L EL+S+ L Sbjct: 61 RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 +Q + + WL+ EGL+ L+G G I A + + A + + K+F Sbjct: 111 NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGF 170 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQR Q V LA + +LP+VAT+ F++ +D+ AH+ + ++ +++ Sbjct: 171 YIELQRCGLPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230 Query: 242 QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + Y +++ EM +F+D+P AL NTV+IA+RC+ L++ P LP F + Sbjct: 231 NPRRQKRFTAEQYFRSQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDG 290 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GLE RLAQ + Y QRL+FE I +M F GYF Sbjct: 291 MSL----DDYLVQLSKEGLEKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ RD VI+YV+ KYG V+QI TFG++ AKAA+RD+GR L + Y D + K Sbjct: 407 FDIDFCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466 Query: 478 LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP P V++ + ++ +E + V +LLE++Q++EGL R+ HA G++I Sbjct: 467 LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 527 GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALV+LYRPG Sbjct: 587 QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+D I + RK+G+E + P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+L Sbjct: 647 PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EEM K +E F GA+ NG+++ + IF+L+ KFA YGFNKSHAAAYA+++ Sbjct: 707 RRAMGKKKPEEMAKHREIFAEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + ++PP VN F+ Sbjct: 767 YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826 Query: 832 -DNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 D + I Y L AIKG G I+ A + F + DFC+RVD + +NRR +E+L+ Sbjct: 827 TDGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALI 886 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R QL+ S+ + A+ N +F S L Sbjct: 887 RAGAFDTLHPNRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELIDEPEW 943 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ LGFY SGH D YK +R+ + E +A ++VS + Sbjct: 944 PEKRKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++G + + + E F Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025 >gi|170781777|ref|YP_001710109.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp. sepedonicus] gi|169156345|emb|CAQ01493.1| DNA polymerase III alpha chain [Clavibacter michiganensis subsp. sepedonicus] Length = 1170 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 383/1061 (36%), Positives = 561/1061 (52%), Gaps = 46/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ SFVHL VHS YS+L+GA + ++ A PA+AITD N+F A +F ++A A Sbjct: 1 MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIEL 115 AG++PIIG + I + + + + + +L T EG L L Sbjct: 61 AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L + R+ L +GLI TG SG + A K F+ Sbjct: 121 SSRASL-EGYYFKPRMDRELLSTY-AKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + + + H G +R + + +LA LPLVATN+ + E D +H L+ Sbjct: 179 DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPIL 292 V T + +R + D + ++ + F D EA +NT+ IA RC A + Sbjct: 239 VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PR+ E + E+ + GL R +G + D R+R D+E+ VIA+M Sbjct: 299 PRYPVPEGE----SEQTWFVKEVERGLVRRYPRGF------SDDVRKRADYEVGVIAQMG 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL LLFERFLNPDR Sbjct: 349 FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D R L P+S Sbjct: 409 VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468 Query: 473 DRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 D+L K +P + + FRE DP ++ E +Q +E L R Sbjct: 469 DKLTKAMPPAIMGKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT++ Sbjct: 529 QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588 Query: 584 KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +L+ + RG K+ L + DD Y LL TLG+FQL+ MR L M+PD ED Sbjct: 589 DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648 Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696 I A+++LYRPGP+ ++ Y RKNG ++I IHP ++ L T G+I+YQEQVM Sbjct: 649 ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F G NG S ++++L F Sbjct: 709 SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 +DY FNK+H+AAY V+SY TA++K HYP E++AA +T D+ +K+ + + R+ I++ Sbjct: 769 SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875 +PP VN F I + L A++ VG + A F+S +DF +V Sbjct: 829 LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934 N+R +ESL+ AGA D G +R LL+ + + + ++ N F Sbjct: 889 VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991 + + + E+ +LG Y S HPL + L K+ G E +AT + Sbjct: 949 QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031 G + LA ++ S Q + R G++ G V + E F Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049 >gi|148242424|ref|YP_001227581.1| DNA polymerase III subunit alpha [Synechococcus sp. RCC307] gi|147850734|emb|CAK28228.1| DNA polymerase III alpha subunit [Synechococcus sp. RCC307] Length = 1179 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 375/1051 (35%), Positives = 570/1051 (54%), Gaps = 35/1051 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L HS YSLL+GA L ++ + PA+A+TD ++ A+E + AGI+P Sbjct: 6 SFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKP 65 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG ++ + + +V+L GY+ L++L S +L + Sbjct: 66 IIGNEMYVVNGSIDDPQPK----KERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRGI 121 Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 I LQ+ +EGLI+ T G I +A VA + ++ L GD Y+ Sbjct: 122 FARACIDKHLLQQY-SEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLE 180 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +Q H DR + ++ L+ + L+ATN++ +LS +D EAHD L+ V ++S + Sbjct: 181 IQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEK 240 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T Y+K+R EM +F D A ++ ++ + ++ + + + + Sbjct: 241 RLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIP 300 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L GL RL A + Y +R+ EL ++ +M F YFL+V D Sbjct: 301 EGHTPVSYLHEVTEQGLRQRLQ--LDADSSIDELYGERMRHELKIMEQMGFPTYFLVVWD 358 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R SMPD D DF Sbjct: 359 YIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 418 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RR EVI YV +YG ++VAQIITF + +KA L+DV R L +PY DRL KLIP Sbjct: 419 CIARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 478 Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P L + + + FR+ +DP V R +++++++EG + HAAG+VI P Sbjct: 479 RGKPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADP 538 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597 L +LVP+ R+ +TQ+ M+ +E GL+K DFLGLK LT+++K+L+ A+ G + D Sbjct: 539 LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSAEHGDRPD 597 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +P DD ETY LL GIFQLES+GMRQ + ++P +EDI ++++LYRPGP+D Sbjct: 598 PDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 657 Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 I + NRK+G+E I + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR Sbjct: 658 GLIPKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 717 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EM K + F+ GAS+ G+ +A +F+ + FA+Y FNKSH+ AY ++YQ Sbjct: 718 AMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 777 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835 TA++K HYPV ++AA +T+ EK++++ ++ I ++PP VN +DF RI Sbjct: 778 TAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDFTPVGQRI 837 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDC 893 + L+A++ +G ++ + D PF SL + C R +LNRR LESL+ +GALD Sbjct: 838 LFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESLIHSGALDA 897 Query: 894 FGY--SRMQLLQSLDNIQKYAQWVEKNRTN---------KHENIFAHEKGTFSDKITLEK 942 +R QL+ LD + +A ++R + + T + Sbjct: 898 LEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATPASAPKAAS 957 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + E+ ++GFY S HPL + R + G + MV Sbjct: 958 VPDYAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSEQSDRQRVSTLVMVP 1017 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + TRKG R+ + + EA FP Sbjct: 1018 EMRVVTTRKGDRMAILQIEDLTGSAEAVVFP 1048 >gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H] gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H] Length = 1140 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 471/1037 (45%), Positives = 646/1037 (62%), Gaps = 26/1037 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+ HS+YSL +GA+ + ++ A + PA+A+TD+ NLF ALEFS + Sbjct: 1 MSHA-DFVHLRNHSAYSLSQGAIRIPELVSLAAKNGMPAVALTDSGNLFGALEFSLYCRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+GCQ+ + + P +V+L EG L L S +L Sbjct: 60 NGVQPIVGCQISLPPRST--------KPGAMSEPLVVLARNEEGLANLQILSSEGFLNGD 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +L + GL +LTGG+ GPI++ A+ L ++ F + V Sbjct: 112 P-ADPSVAVDFLCQ-HAAGLFLLTGGNRGPINKLILEEQKSEAQALLSRLEEAFRGNIAV 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R ++ ES ++ +A ++PLVATN F E +EAHD L+ +A ++++ Sbjct: 170 ELNRFGEAGEQEVESVLIPMADQMDIPLVATNECFFPKPEMHEAHDALLCIAQGRTIAEE 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR V+P + K +EM ++F DLPEA +NT+ IA++C+ P+LP + Sbjct: 230 DRWHVSPQAWFKTPAEMRAVFHDLPEACDNTLIIAQKCAVAACTRKPLLPICPKVR---E 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EE LR A GLE RL A + Y +RL EL++IARM F GYFLIVADF Sbjct: 287 GSTEEETLRAMAWEGLEKRL-DAINAGEEKRKLYSERLQVELDIIARMGFPGYFLIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK ++IPVGPGRGSGAGS+ AYALTITDIDP+ F LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHDIPVGPGRGSGAGSLVAYALTITDIDPIPFGLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVIRYV+ +YG RVAQIITFG LQAKAA+RDVGR L +PY V+R+ +LIPN+P Sbjct: 406 QDRRDEVIRYVREEYGGSRVAQIITFGKLQAKAAVRDVGRVLGLPYGMVNRVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PVS AI + R +E R +D S+ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L Sbjct: 466 AKPVSLSDAIEGEPRLQEMRDSDESLKRLMEIALQLEGLYRHASTHAAGVVIGDRELVEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+L++ LDFL ++G+ VDLS IP Sbjct: 526 VPLYRDPKSDMLVTQYNMKYVEQAGLVKFDFLGLTTLTILKRGLDFLKEQGITVDLSRIP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +T+ +L T G+FQ E +GMR L+ M +ED+IA VSLYRPGP+ NI Y Sbjct: 586 LDDAKTFEMLAKGDTAGVFQFEGAGMRDMLKQMAASRLEDLIAGVSLYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI Sbjct: 646 RRKHG-EPWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIA 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EM+KQ+ F GA+ GI + AV +F+L+A+FADYGFNKSHAAAYA++SYQTAWMK + Sbjct: 705 AEMEKQRAIFTEGATARGIPQEKAVEVFDLMARFADYGFNKSHAAAYALVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837 +PV FLA M+L + +K+ CQ+AR+ NI ++P +N DF + I Y Sbjct: 765 HPVAFLAGCMSLAREKTDKLAALCQEARRMNIPVLPVDINKSLADFSIETLEDGRQGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +L+AIK VG + ++ D+PF L DF R D K LN+ LESL AGA D Sbjct: 825 ALSAIKRVGAAAMQSVVACRGDRPFQDLTDFAERCDPKSLNKIQLESLAKAGAFDSLLKE 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + S D + + AQ + + +F G + + L + R E Sbjct: 885 RHIVFSSADILLRRAQARAQEQQMGQAGLFGGA-GQEREILRLNEGRPWPDFERLSLEAS 943 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015 +GF+ S HPLD Y+ +LR++G+ + +++A VV ++++ TR G ++ Sbjct: 944 AIGFHMSAHPLDAYRSVLRRLGVTPSNALENAAKTGTTRVKIAGCVVDRKERPTRTGKKM 1003 Query: 1016 GWVTFSEPAKEYEANFF 1032 WV S+ E F Sbjct: 1004 AWVNLSDSGGGCEVTLF 1020 >gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43] Length = 1095 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 602/1044 (57%), Gaps = 38/1044 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ A D Q A+A+TD N F + F ++A Sbjct: 1 MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL+ GL+ L+G G I A + A + + ++F Y+ Sbjct: 110 YRGRAELDANWLEGDLAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH Q V +A LP+VAT+ +++ +D+ AH+ + ++ +++ Sbjct: 170 ELQRHGQPGAEAYIQQAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + + + +MV++F+DLP AL NTVEIA+RC+ L++ P LP F + Sbjct: 230 RRQKRFTTEQFFRTQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSQEGLEKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + ++ + Sbjct: 526 LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM + +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMAQHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D I ++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCDVNGIAVLPPDINQSHYRFEPVAQAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 I Y L AIKG G I+ A +KPF L DFC R+D + +NRR +E+L+ A Sbjct: 826 GKRSCTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRA 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R QLL S+ + A+ N +F G + + L + Sbjct: 886 GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 R + E+ LGFY SGH D Y+ +R+ + E +A ++ S + + Sbjct: 943 KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022 >gi|229820885|ref|YP_002882411.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] gi|229566798|gb|ACQ80649.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333] Length = 1190 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 360/1076 (33%), Positives = 550/1076 (51%), Gaps = 56/1076 (5%) Query: 5 LEKS---PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + + FVHL VH+ YS+L+GA + +++ ++ A Q A+AITD LF A +F ++ Sbjct: 1 MPSAAPGSDFVHLHVHTDYSMLDGAARVPDLVAEVKAQGQSAVAITDHGYLFGAYDFWKR 60 Query: 62 ACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 A AAGI+PIIG + + + L+ T G Sbjct: 61 ARAAGIKPIIGLEAYVTPGTARQDRSRVRWGERDQVGDDVAGGGAYTHLTLVSETTAGMH 120 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L + S L + RI + ++GLI +G SG I A + Sbjct: 121 NLFRMGSLASL-EGYYFKPRIDRELMTRY-SDGLIAFSGCPSGEIQTRLRLGQWDEAVRA 178 Query: 171 LLTFKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + +FG D Y+ L H ++ Q+++LA PLVATN+ ++ +ED AH Sbjct: 179 AAELQDIFGKDSFYIELMDHSLELEKRVAKQLMELAAHLGAPLVATNDLHYVRDEDEHAH 238 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 ++L+ V ++++S + L V +++ E I + Sbjct: 239 ELLLCVQSNSLMSDPTYEQGGNRFALSGDGYYVRSSAEMRRLFAELPEACDNTLAIAERC 298 Query: 289 APILP----RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R++ ++E + + GL R + +D Q+ +E Sbjct: 299 EVEFTEQVGRYMPHFPVPPGEDEISLFVKEVERGLVSRFGEHV------PEDVAQQAKYE 352 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + VI ++GY+L+VADFI WAK+N+I VGPGRGSGAGS+ AYA+ IT++DPL L+F Sbjct: 353 IEVITSKGYAGYYLVVADFINWAKRNSIRVGPGRGSGAGSMAAYAMGITELDPLSNGLIF 412 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+RMS+PDFDIDF + RR EVIRYV KYG E VA I+T+G+++AK +L+D GR Sbjct: 413 ERFLNPERMSLPDFDIDFDERRRGEVIRYVTQKYGEENVASIVTYGTIKAKQSLKDSGRV 472 Query: 465 LQMPYSQVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515 L P++ ++L K +P VS + A+ + FR DP ++ + + Sbjct: 473 LGYPFAMGEKLTKAMPPALMGKDVSLSGIFDPEDKRYAEAAEFRTLYETDPDARKVTDAA 532 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HAAGI+I PL ++P+ R +TQ + E GL+K DFLG Sbjct: 533 KGIEGLKRQWGVHAAGIIISSEPLIDVIPIMRRDSDGAIITQIDFPAGEDLGLVKMDFLG 592 Query: 576 LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT+L+ +L + V + +P DD TY LL TLG+FQL+ SGMRQ L Sbjct: 593 LRNLTILEDALVNIGINGKPDVVIEDVPLDDAATYELLGRAETLGVFQLDGSGMRQLLRL 652 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGV 688 M+PD EDI A+ +LYRPGP+ ++ Y RKNG + IV IHP ++ +L T G+ Sbjct: 653 MRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQDIVPIHPELAGPLEEVLGPTYGL 712 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVM IAQ L+GY+L EAD+LRRAMGKK KE +DK+ F +G + G S+ Sbjct: 713 IVYQEQVMAIAQHLAGYTLGEADLLRRAMGKKKKEILDKEYVPFSNGMKERGYSEGAIKA 772 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++++L F+DY FNK+H+AAY +ISY TA++K +Y VE++AA +T D+ +K + + Sbjct: 773 LWDVLVPFSDYAFNKAHSAAYGLISYWTAYLKVNYRVEYMAALLTSTRDDKDKSALYLNE 832 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867 R I ++PP VN +F I + LAA++ VG I +A + F S D Sbjct: 833 CRHLGITVLPPDVNDSAANFTPVGEDIRFGLAAVRNVGANVVEAIAKAREEKGAFTSFTD 892 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +V + N+R +ESLV AGA D G++R LL + V++ ++F Sbjct: 893 FLDKVPAVVCNKRTIESLVKAGAFDALGHTRRSLLLVHEQAVDAVIGVKRKEAEGQFDLF 952 Query: 928 AHEKGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 A G D + + + + E+++LG Y S HPL + +L Sbjct: 953 ASLGGPADDAAGSVASFAVEIPDLPEWDKKQKLSFERQMLGLYVSDHPLAGVEHVLTAAA 1012 Query: 980 IKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + A G+ + +A ++ S Q K +++G+ V + E FF Sbjct: 1013 DVSVATLLADEARPDGSTVTIAGLITSLQVKVSKQGNPWAAVVIEDLEGSIEVMFF 1068 >gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4] Length = 1181 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 318/1063 (29%), Positives = 520/1063 (48%), Gaps = 48/1063 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ +S+L+G ++ + + + PA+ +TD N++ A +F ++A G++PI Sbjct: 5 FVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGVKPI 64 Query: 71 IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IG + + + + + ++ A G + L L S Sbjct: 65 IGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSSLAS 124 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 Q + R+ L E +EG+I +G SG I + A + ++ +FG Sbjct: 125 YEGQLGKWARMDAEILAEY-SEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIFGK 183 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D ++ L H +R +++L +P + TN+ +++ E AH+ ++ V Sbjct: 184 DNFFLELMDHGIDIERRVREDLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQTGK 243 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ ++R + D Y ++ + D + + K Sbjct: 244 TLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRMPK 303 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + E+ L + GL+ R G Q+Y +R +FEL VI + GYFL Sbjct: 304 FPVPEGETEDTWLAKEVHKGLQWRFPDGV------PQEYIERANFELEVIKGKGYPGYFL 357 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D I+ A+ I VGPGRGS AG++ AYAL IT+IDP+ LLFERFLNP+R S PD Sbjct: 358 VVGDLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDI 417 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRLC 476 DIDF RR E+IRY +K+G +++AQ+ITFG+++ KAA++D R Q Y+ DR+ Sbjct: 418 DIDFDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRIT 477 Query: 477 KL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 K P A + + + + R+ DP V R+ + ++ LEG+ R A Sbjct: 478 KALPPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGMVRQAGV 537 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA +++ PL ++PM++ + +T ++ E GL+K DFLGL+ LT++ L+ Sbjct: 538 HACAVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLE 597 Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + RG ++DL + DD TY LL TLG+FQL+S GMR+ L+ M+P DI+A Sbjct: 598 NIKLNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAA 657 Query: 647 VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQ 700 ++LYRPGP+ Y +RKNGK+++V IHP ++ L ET G+I+YQEQ+M I++ Sbjct: 658 LALYRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQIMAISR 717 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 L+GY+ EAD R+AMGKK E + + E+F G + G SK ++ + FA Y Sbjct: 718 ELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIEPFASYA 777 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAA Y ++S+ T ++K +YP E++AA +T D+ +K + + RQ I+++PPS Sbjct: 778 FNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIKVLPPS 837 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879 VN +F I + L A++ VG I+ A A F D+ +++D + Sbjct: 838 VNESLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKIDQTACTK 897 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--- 936 +V ESL+ AGA D G+ R L + + +K ++F T +D Sbjct: 898 KVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDTAADTGF 957 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990 + + ++ + E+ +LG Y SGHPLD + L Sbjct: 958 GDVFAVRVPD-EEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAKTDTNIATIHEGELP 1016 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ ++ + G VT + E FFP Sbjct: 1017 HGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFP 1059 >gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative [Rhodobacterales bacterium Y4I] Length = 1148 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 486/1038 (46%), Positives = 664/1038 (63%), Gaps = 51/1038 (4%) Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 L + D PAIA+TDTNNLFSALEFS A AG+QPIIGCQ+D+ Sbjct: 2 RLKKLPDLCKKHGMPAIAVTDTNNLFSALEFSVSASGAGVQPIIGCQVDL----RFAEPA 57 Query: 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147 G+ P P P +VLL + GY+ L++L S +YL QG + + L L+ + G+I L Sbjct: 58 PGERPKPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-QGGELPHVTLEELESY-SGGVICL 114 Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201 +GG GP+ R AE + K +F DRLYV LQRH G ++ E V Sbjct: 115 SGGPDGPVGRLLQMGQRPAAEALMQRLKAIFPDRLYVELQRHPGEHGQPEAEKQTERGHV 174 Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEM 260 ++AY LPLVATN+ F E +EAHD ++ +A V Q + R R+T HY K++ EM Sbjct: 175 EMAYAMGLPLVATNDVYFPDTEMFEAHDAMICIAEGAYVDQVEPRRRLTAQHYFKSQEEM 234 Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320 V++F+DLPEA+ENTVEIARRC+F+ + +E ELR A GL+ Sbjct: 235 VALFADLPEAIENTVEIARRCAFMAY--------RRDPILPKFADDEVAELRRIANEGLQ 286 Query: 321 VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 RLA I ++Y++RLDFEL +I M F GYFLIVADFIQWAK ++IPVGPGRGS Sbjct: 287 QRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGS 344 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVI+YVQ KYG Sbjct: 345 GAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYVQEKYGR 404 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFR 499 ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL KLIP + P+S+ + ++ R Sbjct: 405 DKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSIADALKEEPRLS 464 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E +P VDRLL Q++EGL R A THAAG+VIGDRPL LVP+YRD RSD+P TQFN Sbjct: 465 EEARNEPVVDRLLTYGQQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRDPRSDMPATQFN 524 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL------------------SLI 601 MKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G + + + I Sbjct: 525 MKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHIAADGTQLYEPPEGAENQINAI 584 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD TY L + T+ +FQ+ES+GM AL+ M+P CIEDI+ALV+LYRPGP++NI VY Sbjct: 585 PLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPMENIPVY 644 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+++ Y+L AD+LRRAMGKKI Sbjct: 645 CEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMANYTLGGADLLRRAMGKKI 704 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KE MD ++ +F GA++NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQT W+K Sbjct: 705 KEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 ++PVEF+A M ++ +K+ + ++ ++ ++ +PP +N F V + + Y+L Sbjct: 765 NHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLKYVPPCINRSLATFNVVNGELVYALG 824 Query: 841 AIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 A+K VG R + EA ++PF ++ DF RV+ KK+ +R LE L AGA D Sbjct: 825 ALKNVGLDVMRLVAEARKENGYERPFVNVFDFARRVNLKKVGKRPLEMLARAGAFDQLDS 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R ++ +SL + Y+ V R + ++F E G + L + R E Sbjct: 885 NRRRVFESLGALVDYSAAVHDQRNSSQVSLFG-EAGEDLPEPRLPSVPDWLPAERLSEEF 943 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014 + +GFY SGHPLD Y P L++ + +E A ++A +V +Q++K+ +G+R Sbjct: 944 KAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPFMAKMAGVVAGRQERKSARGNR 1003 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + S+P+ +E F Sbjct: 1004 FAFAQLSDPSGAFEVTLF 1021 >gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14] gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14] Length = 1235 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 369/1116 (33%), Positives = 551/1116 (49%), Gaps = 103/1116 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G + ++DK D +AITD +F EF Sbjct: 3 DFVHLHVHTHYSILDGQSKIPRLVDKAIQDGMKGMAITDHGVMFGIKEFVDYCSGVNKGR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ +PIIGC++ + + + +++L EGY+ LI+LVSR Sbjct: 63 KKEGLEPFKPIIGCEMYVAHHRLEDKVKENG--DQSGYHLIVLAKNYEGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ EGLI+ + +G + A + L + ++FG Sbjct: 121 W-VDGYYYRPRTDRVDLEKYH-EGLIVCSACIAGEVPAKIIKGDIAGAREALEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ LQRH D + ++ A + + L+ +N+ F +E E Sbjct: 179 EDYYLELQRHEVKDPVIMANREAFPLQQKANKVLIDFAKEYGIKLICSNDVHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R R + + K R EM +FSD+PEAL NT++I + Sbjct: 239 AHDHLLCLSTGKDLDDPMRMRYSKQEWFKTREEMNEVFSDVPEALSNTLDILDKVEMYSI 298 Query: 287 VHAPILPRFIEKECDDIQ------------------------------------------ 304 H PI+P F E + Sbjct: 299 DHGPIMPFFPIPESFGTEDDIRKKFSTEDLLKEFSSDENGDNTLPREDGLKKIESLGGWD 358 Query: 305 -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K E L A G + Q+ ++ ++FEL+V+ M F GYFLI Sbjct: 359 KVYRIKYEAEYLAKLAYDGAKKLYGDPL------PQNVKEHVNFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V+DFI+ A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGKVLRWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLDRSNALCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI REA + DP ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGLKMNLTNAIKCTPELREAESSSDPRERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q V+VDL IP DD TY L T+G FQ ES+GM++ L ++P ED+IA+ + Sbjct: 653 KQTTGVEVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELKPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKNG+E+I P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPSFIARKNGREEIKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D+ K +F+ +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA+MK HYP EF+AA MT + +I K ++ + IQ + P VN F Sbjct: 833 YSWVAYQTAYMKAHYPAEFMAALMTRRFSQITEITKLMEECKSMGIQTLGPDVNESYSGF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V D I + L+AIKG+G A I+ + P+ S+ DF RVD +NR+ ESL Sbjct: 893 GVNDKGEIRFGLSAIKGMGGNAAASIVAERQKNGPYKSIFDFAERVDFGSVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D FG R Q + LD + KY Q + + ++F Sbjct: 953 LSGGFDGFGLRREQYFGTSAKGEVFLDTLVKYGQLFQAEQMEAQTSLFGGADAIEIATPP 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996 + + ++ + E+ ++G Y S HPLD Y +L M E + +I Sbjct: 1013 IPEGEQWSTIEKLNRERDLVGIYISAHPLDDYSIVLNSMCNTHCTEIEDKAELAKKEDIV 1072 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L +V + K T+ G G+VT + E FF Sbjct: 1073 LGGIVTGVKSKFTKNGKPCGFVTIEDFEGSGELAFF 1108 >gi|328907421|gb|EGG27187.1| DNA polymerase III subunit alpha [Propionibacterium sp. P08] Length = 1190 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 ++PIIG + + D + + + + Sbjct: 60 YDGDQNPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 EG L L S + R+ + + +G+I TG SG + Sbjct: 120 WAKDPEGLHNLFRLSSLAS-YEGYYMKPRMDRELMSQYP-DGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKHVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFLIV+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVD 509 +D R L P+S D++ K +P D V S + + FR+ +P V Sbjct: 470 KDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++++ ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL + DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F RV N+R++ESL+ AGA D G+SR L+ + +++N+ N Sbjct: 890 APDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQVN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V +A MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|313837783|gb|EFS75497.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA2] gi|314927335|gb|EFS91166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL044PA1] gi|314972435|gb|EFT16532.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA3] Length = 1219 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 333/1073 (31%), Positives = 536/1073 (49%), Gaps = 58/1073 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 33 SDFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGD 92 Query: 67 ----IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVLLVST 105 ++PIIG + + D + + + + Sbjct: 93 QNPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKD 152 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 EG L L S + R+ + + +G+I TG SG + + Sbjct: 153 PEGLHNLFRLSSLAS-YEGYYMKPRMDRELMSQYP-DGIIASTGCPSGEVQTRLRLGQFE 210 Query: 166 VAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223 A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S +++E+ Sbjct: 211 EACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYVTED 270 Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 271 QADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTEMIG 330 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 +V + + + +E+ LR K GL+ + ++ +RL+ Sbjct: 331 SYDEVFKHVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVLERLE 382 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 EL+VI + FS YFLIV+D A+ +PVGPGRGS AGS+ AY I I+PL L Sbjct: 383 TELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHGL 442 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R++ PD D+DF +RD+VI YV KYG E +Q+ TFG ++AKAA++D Sbjct: 443 LFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAAVKDAN 502 Query: 463 RALQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLE 513 R L P+S D++ K +P D V S + + FR+ +P V ++++ Sbjct: 503 RILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDVAKVVD 562 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+K DF Sbjct: 563 TARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDF 622 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ L ++ + + RG+ VDL + DD TY +L TLG+FQL+ + MR L Sbjct: 623 LGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTAMRSLL 682 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686 M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L T Sbjct: 683 RLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPTY 742 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 743 HLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDAI 802 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ + Sbjct: 803 QTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMYL 862 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 863 ADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPDF 922 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 F RV N+R++ESL+ AGA D G+SR L+ + +++N+ N ++ Sbjct: 923 FTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQVNGQDD 982 Query: 926 IFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 +F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 983 LFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDIS 1042 Query: 983 YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V +A MV ++ T+ G VT + FP Sbjct: 1043 VAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1095 >gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1] Length = 1118 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 481/1011 (47%), Positives = 661/1011 (65%), Gaps = 31/1011 (3%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+ ITDT NLF ALEFS AGIQPI+G Q+ I +D + G+ P P +V Sbjct: 1 MPAVGITDTANLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LV 57 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LL GY L++LVS+ +L ++ ++ L L E ++GLI+LTGG +GP+ R Sbjct: 58 LLCQNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLA 116 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLF 219 ++ AE L + F R YV L RH + E +V LAY H+LPLVATN + F Sbjct: 117 DGQTEKAEIVLARLARAFAGRCYVELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFF 176 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 YEAHD L+ +A +SQ +R R+TP+HY K+ EM ++F+DLPEA +NT+ IAR Sbjct: 177 ADRGMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIAR 236 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--- 336 RC+F + I E LR K GLE RL + +G + Sbjct: 237 RCAF-----GVAKRKPILPPYRMDGLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEH 291 Query: 337 ----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 YR+R++FELNVI M F GYFLIV+DFIQW+K IPVGPGRGSGAGS A+ALTI Sbjct: 292 AAKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTI 351 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 TD+DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG L Sbjct: 352 TDLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKL 411 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRL 511 QA+A LRDVGR LQMPY QVDR+CKL+PN+PA+P++ QA+ + +E + D +V L Sbjct: 412 QARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHL 471 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 ++++ KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KF Sbjct: 472 IDLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKF 531 Query: 572 DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLT++ ++ + + + +DLS IP DD ++Y LL+ G+FQLESSGMR Sbjct: 532 DFLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRD 591 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L M P+ +ED+IA+V+LYRPGP+D I Y K+GKE+ +HPL++P+LKET G+++ Sbjct: 592 VLRKMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMV 651 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQIAQ+LSGYSL AD+LRRAMGKK +EEMD+Q+ +F+ GA+ + A IF Sbjct: 652 YQEQVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIF 711 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + +AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+ F Q+ Sbjct: 712 DKVAKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELD 771 Query: 811 QFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864 + I+++PP +N F V + + Y+LAA+K VG + +++ F Sbjct: 772 RLGIKLLPPDINASQPTFSVEVLPDGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKD 831 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 + DF +R+DSK LNRR LE++V AG D +R +L ++ D + +YA ++R + Sbjct: 832 VGDFAARMDSKVLNRRQLENMVKAGVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQM 891 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++ G+ + + LE + + E +GFY S HPLD Y ++++ + Sbjct: 892 SLLG---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIA 948 Query: 985 ESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E ++ +RLA ++SKQ++ + KGSR ++ FS+ + +E F Sbjct: 949 ELPRHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 999 >gi|148273031|ref|YP_001222592.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830961|emb|CAN01906.1| dnaE2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1170 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 383/1061 (36%), Positives = 562/1061 (52%), Gaps = 46/1061 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ SFVHL VHS YS+L+GA + ++ A + PA+AITD N+F A +F ++A A Sbjct: 1 MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIEL 115 AG++PIIG + I + + + + + +L T EG L L Sbjct: 61 AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 SR L + R+ L +GLI TG SG + A K F+ Sbjct: 121 SSRASL-EGYYFKPRMDRELLSTY-AKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + + + H G +R + + +LA LPLVATN+ + E D +H L+ Sbjct: 179 DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPIL 292 V T + +R + D + ++ + F D EA +NT+ IA RC A + Sbjct: 239 VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 PR+ E + E+ + GL R +G + D R+R D+E+ VIA+M Sbjct: 299 PRYPVPEGE----SEQTWFVKEVERGLVRRYPRGF------SDDVRKRADYEVGVIAQMG 348 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL LLFERFLNPDR Sbjct: 349 FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D R L P+S Sbjct: 409 VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468 Query: 473 DRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 D+L K +P + + FRE DP ++ E +Q +E L R Sbjct: 469 DKLTKAMPPAIMGKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT++ Sbjct: 529 QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588 Query: 584 KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +L+ + RG K+ L + DD Y LL TLG+FQL+ MR L M+PD ED Sbjct: 589 DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648 Query: 643 IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696 I A+++LYRPGP+ ++ Y RKNG ++I IHP ++ L T G+I+YQEQVM Sbjct: 649 ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F G NG S ++++L F Sbjct: 709 SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 +DY FNK+H+AAY V+SY TA++K HYP E++AA +T D+ +K+ + + R+ I++ Sbjct: 769 SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875 +PP VN F I + L A++ VG + A F+S +DF +V Sbjct: 829 LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934 N+R +ESL+ AGA D G +R LL+ + + + ++ N F Sbjct: 889 VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991 + + + E+ +LG Y S HPL + L K+ G E +AT + Sbjct: 949 QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031 G + LA ++ S Q + R G++ G V + E F Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049 >gi|261337490|ref|ZP_05965374.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM 20093] gi|270277885|gb|EFA23739.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM 20093] Length = 1185 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 330/1071 (30%), Positives = 551/1071 (51%), Gaps = 53/1071 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ FVHL H+ YSLL+GA + N++ + A+ ITD N+ A E +A A Sbjct: 1 MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 G++PI+G + + + + + + L EG L+ Sbjct: 61 NGVKPILGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLL 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L + + R+ LQ +G+I +G SG + A + Sbjct: 121 KASSVANLEGRVMRYPRMDKEVLQTY-AKGIICGSGCPSGIVQTRLRLGQFDEALRAAGE 179 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + +FG + Y+ L H +R + ++ +A + PL+ATN+S ++ ED A D + Sbjct: 180 LQDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAM 239 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + + + R + + Y EM +F +LPEA +NT+E+A RC+ I H Sbjct: 240 LCINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHED 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + +E + K GLE R G ++ ++ D+E +I + Sbjct: 300 GAFMPEFDCPEG--WDETSLFLRKVEEGLEKRY------DGNPPEEVLKQADYECGIICQ 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M+F GYFL+VAD+I WAK++++ VGPGRGS AG++ AYA+ ITD+DPL+ L+FERFLNP Sbjct: 352 MQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+S+PD D+DF + R V+ YV +KYGH++VAQ + +G+++ K AL+D R + +S Sbjct: 412 ERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFS 471 Query: 471 QVDRLCKLIPN--DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520 +R+ K +P ++++ I A+ +RE +D V R+ + + +EG Sbjct: 472 MGERVTKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA ++G +P++ P+ + T F E GL+K DFLGL LT Sbjct: 532 LIRQTGVHACATIMGSKPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLT 590 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +L + +D + IP DD T+ LL++ TLG+FQL+S GMR L+ ++PD Sbjct: 591 VIHDTLKNIENNGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKMLRPDN 650 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693 DI AL++LYRPGP+ Y RKNG+++I IHP ++P+LKET G+I+YQE Sbjct: 651 FSDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVAEALEPILKETYGLIVYQE 710 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+ A++L+GYSL +ADVLRRAMGKK E + K+K F G +G S+ A ++++ Sbjct: 711 QIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQAVWDVF 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNK+H+AAY +ISY TA++K HYPVEF+AA + +N +K + +AR+ Sbjct: 771 LPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLGEARRMG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871 I+++ P VN ++ + + + L A++ VG + + I+ + + + D+ R Sbjct: 831 IKVLSPDVNESLYEYSAVGDVVRFGLGAVRNVGESAVQDIIAERNNGKGKYVNFMDYIQR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L Q + +++ + ++FA Sbjct: 891 VPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQFDLFADLD 950 Query: 932 GTF------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G +I + + + E+ +LG Y S HPL + +L + Sbjct: 951 GDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGLREMSIAR 1010 Query: 986 SVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +A +V ++K +++G+ +T + + F Sbjct: 1011 LIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLF 1061 >gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145] Length = 1454 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 355/1085 (32%), Positives = 552/1085 (50%), Gaps = 77/1085 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL H+ +S+L+ S+ ++ ++ A+AITD N+ A F Sbjct: 257 DFVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMMGAFHFVNNVLNHNKSA 316 Query: 61 -----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 +A G I+PI+GC+ + ++ KT IVLL G Sbjct: 317 QAKNTEAEEKGETPTEQIIKPILGCEFFVCDN------HKDKTRKDNGYQIVLLAKNKNG 370 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y L ++ S Y D RI + +++ E +I+L+G G I AE Sbjct: 371 YHNLAKMSSLAYT-DGFYYVPRIDRAIVEKY-KEDIIVLSGNLYGEIPNKILNVGEIQAE 428 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 L+ +K F D Y+ + RH D R +++LA H++ L+ATNN+ +++++D A Sbjct: 429 DALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYYINKKDAHA 488 Query: 228 HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 HD+L+ V ++ ++Y K++ EM +F DLPEA+ N EI + Sbjct: 489 HDILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIVNIQEIVDK 548 Query: 281 CSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332 +LP+F E D ++ E L + G + R + Sbjct: 549 IEIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYPE------- 601 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 Q+ R+RLDFEL I R + GYFLIV DFI+ A+ + VGPGRGS AGS AY L I Sbjct: 602 ITQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLGI 661 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T++DP+ + LLFERFLNPDR+SMPD DIDF + R +V++YV +KYG +VAQIIT+G++ Sbjct: 662 TNLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGTM 721 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFRE 500 AK+++RD R L +P + D++ KLIPN + + + + +E Sbjct: 722 AAKSSIRDTARVLDLPLFEADKIAKLIPNLKLNKIFNMDDQALRSVLRSEELEGVQQLKE 781 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 ++ ++ LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 782 LASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFDN 841 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E AGL+K DFLGLKTLTL++ ++ + R D P DD +TY L T+G Sbjct: 842 SVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRGETVG 901 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E I + Sbjct: 902 IFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDLDACE 961 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K+ +DK K +FI A +N Sbjct: 962 EYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQAGEN 1021 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + + I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ M+++ Sbjct: 1022 GHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMNDI 1081 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858 +++ F ++ ++ ++++ P VN F V D I + + AIKGVG I+E Sbjct: 1082 KQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETIIENRK 1141 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910 + S+ D R+D + N++ E+L+ AG DCF G R Q ++ K Sbjct: 1142 SGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILMEKAIK 1201 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y ++N + ++F + TL + + E+ V+G Y SGHPLD Sbjct: 1202 YGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGHPLDD 1261 Query: 971 YKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 YK +L K G I ++ +V S + T+ G + Y Sbjct: 1262 YKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGRGWAFFKLEGYDDGY 1321 Query: 1028 EANFF 1032 E + Sbjct: 1322 EFAIY 1326 >gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS] gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS] Length = 1153 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 398/1049 (37%), Positives = 602/1049 (57%), Gaps = 40/1049 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ + SFVHL++HS YS+++G + +++++ A D QPA+A+TD +NLF ++F + A Sbjct: 1 MKNT-SFVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PI GC + I + + ++LLV GY L EL+SR +L +Q Sbjct: 60 KGVKPIAGCDVWITNDVDREKP----------SRLLLLVKDRRGYLNLCELLSRAWLENQ 109 Query: 125 GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + I + WL+E+ GLI L+G G I A + A+K L + +F Sbjct: 110 YRGRAEIRIEWLEELARRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPG 169 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ +QR Q +LA +LP+VAT+ FLS + + AH+ ++ V Sbjct: 170 NFYIEIQRTGQLGMEQYVRQAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEV 229 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +S K R R +++EM +F+DLP AL+N VEIARRC+ +L++ LP F Sbjct: 230 LSNKKRARLFNEHQCFLSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTP 289 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + + E+E R+ + L + Y +RL++E+ I M FSGYFL Sbjct: 290 DGMTLDEFLESEARH-GLEKRLEVLFPDEEERKARRPVYDERLNYEIQTIINMGFSGYFL 348 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DP+ ++L+FERFLNP+R+SMPDF Sbjct: 349 IVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPDF 408 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQ RD VI+YV+ +YG + V+QI TFG++ AKAA+RDVGR L + Y+ D + KL Sbjct: 409 DIDFCQHGRDRVIQYVKERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKL 468 Query: 479 IPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP P V++ ++ E ++ V +LL +++++EG+ R+ HA G++I Sbjct: 469 IPFKPGKQVTIADAKKEEPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPG 528 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594 L+ P+Y V+QF+ K +E+ GL+KFDFLGL TLT+L ++ ++ Q Sbjct: 529 KLTDFCPLYTQDGESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAMS 588 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +L IP +D ET+ LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP Sbjct: 589 GFELDTIPLNDKETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 648 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+G E +L ET G++IYQEQVMQ+AQ++ GY+L AD+LR Sbjct: 649 MDLIPDFCRRKHG-EAFEYPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLR 707 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EM + ++ F GA+KN + + A IF+L+ KFA YGFNKSHA AYA++SY Sbjct: 708 RAMGKKDAAEMARHRQIFRDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLSY 767 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDN 833 QTA++K H+ F+AA+M+L MD+ +K++ +DA ++I+PP +N+ FK Sbjct: 768 QTAYLKKHHAAAFMAANMSLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVGE 827 Query: 834 ----------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 +I Y L A+KG G + I++A ++PF L DFC RVD +++NRR +E Sbjct: 828 PPSVSKKPVTQIRYGLGAVKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTIE 887 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 SL+ AGA DCF R LL S+ + + ++F E+ T + + + Sbjct: 888 SLIRAGAFDCFKEDRAVLLASVG--LAIEAAEQAEASANQVSLFG-EEDTVLNAVEYVRV 944 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 R E+ VLGF SGH Y R+ E A+ + A +V Sbjct: 945 PHWTEKSRLTEEKGVLGFCLSGHLFHAYAGEARQFAKSRISELEASREPRWV--AGIVAG 1002 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +++G + V+ + + E F Sbjct: 1003 TRAQMSQRGKMMV-VSLDDGSATIEVTVF 1030 >gi|298252640|ref|ZP_06976434.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1] gi|297533004|gb|EFH71888.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1] Length = 1178 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 345/1063 (32%), Positives = 540/1063 (50%), Gaps = 55/1063 (5%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74 H+ YSLL+GA + +++ + PA+AITD N+ A E A AGI+PIIG + Sbjct: 2 HNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPIIGIE 61 Query: 75 LDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 + + + + + L G L++ S L Sbjct: 62 AYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSVANLEG 121 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 + + R+ L ++G+I +G SG I + A + F+ +FG D Sbjct: 122 RVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIFGRDNF 180 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ L H + ++++A PL+ATN+ ++ EED EA D ++ + + + Sbjct: 181 FIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINSGSRLD 240 Query: 242 QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR + +YLK+ +M +F + PEA +NT+EIARRC+ + Sbjct: 241 DPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQFDCP 300 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + +E + K GLE R + ++ D+E VI +M+F GYFL+V Sbjct: 301 EG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVICQMQFCGYFLVV 352 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 AD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ L+FERFLNP+R+S+PD D+ Sbjct: 353 ADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDIDV 412 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LI 479 DF D R +V+ YV KYG ++VAQ + +G+++ K AL+D R + +S +++ K L Sbjct: 413 DFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKVLP 472 Query: 480 PNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 P +SL I D+ FRE DP R+ E ++ +EGL R HA Sbjct: 473 PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGVHACA 532 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++G P++ P+ + T F E GL+K DFLGL LT+++ +L + Sbjct: 533 TIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLRNIEN 591 Query: 592 R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +D + IP DD TY LL+ TLG+FQL+S GMR L ++PD DI AL++LY Sbjct: 592 NGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIALY 651 Query: 651 RPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSG 704 RPGP+D Y RKNG + I+ IHP + +L ET G+I+YQEQV A++L+G Sbjct: 652 RPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAARILAG 711 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL +ADVLRRAMGKK E + K++ F G +G S+ A ++++L F+ Y FNK+ Sbjct: 712 YSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGYAFNKA 771 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+AAY +ISY TA++KTHYPVEF+AA + E N +K + +AR+ IQ++ P VN Sbjct: 772 HSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQPDVNES 831 Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVL 882 +++ + + + L AI+ VG I+ F + DF RV LNRR++ Sbjct: 832 VLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISALNRRLV 891 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---------HEKGT 933 ESL+ AGA D +R L Q D +++ + ++FA + G Sbjct: 892 ESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSDDDNGM 951 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----T 989 +IT+ + + E+ +LG Y S HPL +L + + + Sbjct: 952 GDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLIDRARTM 1011 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A +V S ++ +RKG+ VT + + FF Sbjct: 1012 SDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1054 >gi|289450822|ref|YP_003474944.1| DNA polymerase III subunit alpha [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185369|gb|ADC91794.1| DNA polymerase III, alpha subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1325 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 374/1056 (35%), Positives = 570/1056 (53%), Gaps = 46/1056 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL GA ++ + +IA A AITD ++ ALEF Q I+P Sbjct: 3 DFVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + + L + ++LL G + L +LV+ Y + Sbjct: 63 IIGCEVYVALNGRL---AKDGVADRRTAHLILLAENNCGLRNLNKLVTLSYT-EGFYGKP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L EGLI L+G G I A A + ++ +FG + ++ +Q Sbjct: 119 RVDHELLALYH-EGLIALSGCIEGEIPLALRRGDFAGACELARQYQDIFGSENFFLEMQA 177 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ S ++++A +P VATN+ ++ + D AH++L+ + ++ + RPR Sbjct: 178 TGLPEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDEHRPR 237 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + Y+K+ SEM + F DLPEAL NTV IA RC + LP+F + E + Sbjct: 238 IGSDQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEEF---SD 294 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L K AGLE RLAQ A A + Y +RL +EL+VI M ++ Y+LIV DFI + Sbjct: 295 SVAYLTTKCRAGLERRLAQAAFA---PRETYEERLKYELSVINSMGYTDYYLIVWDFIDY 351 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+N I VGPGRGSGAGS+ A+ L IT+IDPLR++L+FERFLN +R+SMPDFDIDFC +R Sbjct: 352 AKRNGIFVGPGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDIDFCFER 411 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EVI YV KYG ERV Q+ITFG++ AKA +RDV R L P + D+L K+IP Sbjct: 412 RQEVIDYVYRKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIPGVLGMT 471 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ ++ + DP V +L++ +Q LEGL RHASTHAAG++I P+ P+ Sbjct: 472 LK-KALNINADLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVVNYAPL- 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 + V Q+ +IE GL+KFDFLGL+TLT+L+ + + G ++D + D Sbjct: 530 -AKNDEALVVQYTKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFDQLDLAD 588 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 + +++L T G+FQLESSGM ++ ++P +EDIIA +SLYRPGP++ I Y + Sbjct: 589 EKVFNMLGRGETDGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIPRYVAAR 648 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--- 722 + I HPL+ P+L+ T G I+YQEQVMQI + L+G+S+ AD++RRAM KK Sbjct: 649 HNPALISYDHPLLRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAKKKPKEL 708 Query: 723 --------EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 K + G NG+ + + IF + FA Y FNK HAA+YA+++Y Sbjct: 709 ATYEGLFLFGGHDFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAASYAIVAY 768 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 TAW++ +YP EF+AA + + ++ K + Q RQ I+++P +VN V F N Sbjct: 769 YTAWLRLYYPTEFMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKFATEGKN 828 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 +I ++L AIK VG R ++ A+ F DF R + LNR++ ESL+ AGALD Sbjct: 829 KIRFALGAIKNVGFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLIRAGALD 888 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950 CF R +LL ++ + ++F +G + +S Sbjct: 889 CFNIDRARLLTAVVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYLPVKAFSSLE 948 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------------ESVATIRGNNIRL 997 + EQ ++G Y +GHPL Y+ + + + G++++ Sbjct: 949 KLMMEQELIGLYLTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERRAADGDSVKF 1008 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A V+S ++ TR+ +++ + + +E FP Sbjct: 1009 MAFVLSVTERITRQSTKMARIVAEDFISRFEVVAFP 1044 >gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans] gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans] Length = 1153 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 397/1042 (38%), Positives = 600/1042 (57%), Gaps = 34/1042 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 SP F+HL++HS YS+++G + +++++ AAD QP++AITD NLF ++F ++A + GI Sbjct: 3 SPQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI+GC + I ++ ++LLV GY +L EL+S+ +L + + Sbjct: 63 KPIVGCDVWISNDNDRDKP----------SRLLLLVKNKTGYLQLCELLSKAWLTNLHRG 112 Query: 128 SVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 I WL+++ E GLI+L+G G I A + AE+ + +F Y Sbjct: 113 RAEIRPEWLEQLAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFY 172 Query: 184 VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +QR + Q LA LPLVAT+ FL + ++ AH+ ++ +++ Sbjct: 173 IEVQRAEQPNMDAHVRQASVLAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEILAN 232 Query: 243 KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R ++EM +F+D+P AL+N+VEIA+RC+ +L++ P LP F + Sbjct: 233 PRRIKRFNERQRFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPDGS 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 I + E + + G L + + + Y+ RL FE + I M F GYFLIVA Sbjct: 293 SIDEFLVKE-AQRGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGYFLIVA 351 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDID Sbjct: 352 DFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDID 411 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L Y+ D + KLIP Sbjct: 412 FCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPF 471 Query: 482 DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P V++ AI ++ E + V +LLE++QK+EG+ R+ HA G++I L+ Sbjct: 472 KPGKLVTIADAIKEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIAPGKLT 531 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVD 597 P+Y V+Q++ +E GL+KFDFLGL TLT+L +++ ++ Sbjct: 532 DFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFS 591 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP+D Sbjct: 592 LEKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDL 651 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+LRRAM Sbjct: 652 IPDFCRRKHG-ERFEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAM 710 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM + +E F +GA+KN +S A IF+L+ KFA YGFNKSHAAAYA++SY TA Sbjct: 711 GKKKAEEMAQHRELFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTA 770 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGD---- 832 ++K H+P F+AA+++L MD+ +KIK +D + ++PP +N F Sbjct: 771 YLKAHHPAAFMAANLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPVGVPGK 830 Query: 833 --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 +I Y L A+KG G I+ A KPF L DFC RVD +++NRR ++SL+ AGA Sbjct: 831 KATQIRYGLGAVKGSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSLIRAGA 890 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 DCF R LL S+ + A+ + + ++F + K S + Sbjct: 891 FDCFNIDRAVLLASVGFAMECAE--QAEASANQVSLFGGDDSDMETPPEYVKASPWSDKQ 948 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + E+ LGFY SGH D Y +R+ + +A ++ + + T+ Sbjct: 949 KLTEEKAALGFYLSGHLFDAYAEEVRRFARTKLSNLEPSREPR--TIAGVISGVRTQMTQ 1006 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 +G R+ VT + + + + Sbjct: 1007 RG-RMIIVTLDDGSATVDVTVY 1027 >gi|154148261|ref|YP_001407070.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381] gi|153804270|gb|ABS51277.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381] Length = 1213 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 381/1072 (35%), Positives = 581/1072 (54%), Gaps = 56/1072 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL +H+ YSLL+G ++N+ + A+AITD N+F A+EF + GI+ Sbjct: 2 SEFTHLHLHTEYSLLDGVNKIDNLAKILKERGTKAVAITDHGNMFGAIEFYKTMKKNGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + I D L ++LL GY+ LI L S+ +L D Sbjct: 62 PIIGMEAYIHNHDKL-----DDKSDKQRFHLILLAKNEIGYKNLIYLSSKAFL-DGFYYY 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179 RI + L+ EG+I +G I + A+K L +K++FG Sbjct: 116 PRINKNLLRA-HHEGIICNAACIAGEIGFHLNLSERNIKRGAKGYEGAKKAALEYKEIFG 174 Query: 180 DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH + R +++L+ + L+A+N++ + ++ ++ D+ + ++ + Sbjct: 175 DDFYLEIMRHGYTSQLRIDDDLIRLSRETGIKLIASNDAHYTNQAGHDLQDIFVCLSTGS 234 Query: 239 VVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V+S R T EM IF+D+PE +ENT EIA +C+ P Sbjct: 235 VLSDPKRMHHTVRQLYVKTDEEMKEIFADIPEVIENTQEIANKCNLSFAFDDPNYHPTAP 294 Query: 298 KECDDIQK---------EEENELRNKAVAGLEVRLAQGAIAKG------YHAQDYRQRLD 342 +K E E K L L + + K + Y+ RL+ Sbjct: 295 NFKFTREKANLINLTLPEANEEYSKKNDDLLFETLCRDGLTKRLEFIAPEKHEIYKARLE 354 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ +I +M F GY LIV DFI WAK ++IPVGPGRGS AGS+ AY+L ITD+DP+ ++L Sbjct: 355 KEIQIIEKMGFGGYMLIVQDFINWAKDHDIPVGPGRGSAAGSLCAYSLRITDLDPIPYNL 414 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNPDR+SMPD D+DF Q RR+EV YV NKYG E VAQ+ TFG L A+ +RDV Sbjct: 415 LFERFLNPDRISMPDIDVDFAQARREEVFEYVSNKYGKENVAQVATFGKLLARGVIRDVA 474 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRL 511 R +MP + D + KL+P + A + + ++ DP ++ Sbjct: 475 RVCEMPLYKADAMAKLVPEQLGITLNGEGEPGSEKYKPGAFQLEPKIKDLVEQDPLAKKV 534 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLI 569 + S LEGL R+ HAAG+VI + PL VP+ +TQ+ ++E LI Sbjct: 535 WDYSLGLEGLNRNTGMHAAGVVISNDPLWNKVPLFRQTKSDDGHYITQYTKLYLEDVDLI 594 Query: 570 KFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 KFDFLGLK L ++ ++ + +R K I F+D +TY + + T GIFQ+ES GM Sbjct: 595 KFDFLGLKNLDVIANAIKLIKRRYNKDIVWENIDFNDKKTYETIQSGNTFGIFQIESPGM 654 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 ++ G++PDC EDIIA++S++RPGP++ I + RK+G+ K+ I P I +L+ T G+ Sbjct: 655 QKLATGLKPDCFEDIIAMISIFRPGPMELIPDFIARKHGEAKVEYIMPEIKEILEPTYGI 714 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQVMQI Q + G+SL EAD++RRAM KK ++++ +E+++ GA K G A Sbjct: 715 IVYQEQVMQIVQKIGGFSLGEADLVRRAMSKKDEKKLAHMREQYLDGAKKLGFDTNKANE 774 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 +F+L+ KFA YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E N +K+ + + Sbjct: 775 LFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEESNADKVLTYIDE 834 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDN-------RIYYSLAAIKGVGTTTARHIMEASADKP 861 A++ I I+PPS+N +F V D+ I Y L AIKGVG +I+E +KP Sbjct: 835 AKRLGITILPPSINKSIREFSVTDDENAPSKTAIIYGLGAIKGVGLAGIENIIELRDEKP 894 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F++++DF SRVD+ K+N++V+E+L AGA+DC G +R LLQ+ +NI + R Sbjct: 895 FETIDDFASRVDNFKVNKKVIEALTCAGAMDCLGKTRKALLQNSENIVDAMKKAAILRDE 954 Query: 922 KHENIFAHEKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 ++ ++ F K+ E + EQ+ +G Y SGHPLD +K + + Sbjct: 955 ATSSLNFGDESFFDIKVNFEDTKEEFKRKELLKLEQQSIGIYLSGHPLDDFKDEISSINY 1014 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T G I + S +K T+ G ++G ++ + +E F Sbjct: 1015 TSTTDFENTDDG-EILCVGKIESITKKITKSGKQMGIISVLDFGGIFEMTAF 1065 >gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922] gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922] Length = 1463 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 355/1089 (32%), Positives = 554/1089 (50%), Gaps = 78/1089 (7%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---- 61 E +P F HL H+ +S+L+ +++ +++ A PA+AITD N+ A F Sbjct: 257 ENAP-FSHLHNHTQFSILQSTITIKDLVKATAKQNMPAVAITDHGNMMGAFHFVDAVYEH 315 Query: 62 ------------ACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104 A G I+PI+G + + + KT IV L Sbjct: 316 NQQVEEKNKELEAQGLGPTEKTIKPIVGVEFFVC------ENHLDKTKKDNGYQIVFLAK 369 Query: 105 TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164 GY L ++ S+ + D RI +++ EGLI+L+G G I Sbjct: 370 NKVGYHNLAKMASKGNI-DGFYYVPRIDREVIRQ-HKEGLIVLSGNLQGEIPNKILNIGE 427 Query: 165 QVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEE 223 + AE+ L +K+ FGD Y+ L RH D R ++Q A H + L+ATNN+ ++ +E Sbjct: 428 RQAEEALEWWKEEFGDDFYIELMRHGQEDEDRVNQTLIQFAMKHNVKLIATNNTYYIDKE 487 Query: 224 DYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276 D AHD+L+ V + S ++Y K+ EM ++F D+P A+ N E Sbjct: 488 DSNAHDILLCVRDAEKQSTPIGRGRGFRFGFPNQEYYFKSSEEMKNLFRDIPHAIINIQE 547 Query: 277 IARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328 I + + P E E D ++ E LR G + Sbjct: 548 IVDKVEEYKLRRDVLLPKFTIPEEFIHAEDEQDGGKRGENAYLRFLTYEGAKR------- 600 Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388 + +RLDFEL I R + GYFLIV DFI A++ + VGPGRGS AGS AY Sbjct: 601 RYETITSEIEERLDFELTTIERTGYPGYFLIVQDFIAAAREMGVSVGPGRGSAAGSAVAY 660 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT++DP+ + LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT Sbjct: 661 CLGITNLDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRSLVMDYVINKYGANQVAQIIT 720 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDS 496 +G++ AK+++RD R L +P + D++ KLIPN + + + + + Sbjct: 721 YGTMAAKSSIRDTARVLDLPLYEADKIAKLIPNMKLSKIFQLDEKVLRNELRPEDLENVL 780 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + + + ++ +Q LEG R+ HA G++I ++ VP+ SDL +T Sbjct: 781 ELKRLSDGNDLTAQTIQQAQILEGSVRNTGVHACGVIITPDDITNFVPVTTAKDSDLYLT 840 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTK 615 QF+ E AGL+K DFLGLKTLTL++ ++ + R D IP DD++TY L Sbjct: 841 QFDNSVAEFAGLLKMDFLGLKTLTLIKDTIKLVKLRHDIDIDPDQIPIDDNKTYELFQRG 900 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGP++ I + RK G E+I Sbjct: 901 ETIGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPMEYIPSFIRRKAGIEEITYDL 960 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 + L ET G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK K +DK K +FI Sbjct: 961 DACEEYLSETYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKQKAVLDKMKPKFIEQ 1020 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A+ G I I+ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ Sbjct: 1021 AAAKGHDPKILEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN 1080 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM 854 M++++++ F ++ ++ I+++ P VN F V +N I + + A+KGVG+ + I+ Sbjct: 1081 MNDIKQVTFFMEECKRMGIKVLNPDVNESISKFNVNENNAIRFGMEAVKGVGSAAVKAII 1140 Query: 855 EAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ------SLDN 907 + F S+ DF RVD + +N++ +E+L+ AGA D FG+ R + +L+ Sbjct: 1141 AEREKNGDFSSIFDFVKRVDLRVVNKKTIENLILAGAFDQFGFHRGRYFYQEDGTTNLEK 1200 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGH 966 I KY + + + ++F GT D + L + E+ V+G + S H Sbjct: 1201 IIKYGGNYQAQKNSAQTSLFGGLDGTVEDIVPQLPDCDKWSIVQELYKEKEVIGMFISSH 1260 Query: 967 PLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 PLD YK ++ + + + G + + ++ + + ++ G G TFS+ Sbjct: 1261 PLDEYKDEIKLISNMTLGQLIGREGEVSGRELSMCGIMSNVMHRISKNGKEYGSFTFSDY 1320 Query: 1024 AKEYEANFF 1032 + Y+ F Sbjct: 1321 SDSYDFMIF 1329 >gi|183602396|ref|ZP_02963762.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|219683289|ref|YP_002469672.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis AD011] gi|241191250|ref|YP_002968644.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196656|ref|YP_002970211.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218315|gb|EDT88960.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|219620939|gb|ACL29096.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240249642|gb|ACS46582.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251210|gb|ACS48149.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177365|gb|ADC84611.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp. lactis BB-12] gi|295794243|gb|ADG33778.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp. lactis V9] Length = 1188 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 336/1074 (31%), Positives = 530/1074 (49%), Gaps = 56/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FV L H+ YSLL+GA + +++ A+ ITD N+ A E +A Sbjct: 1 MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK 60 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 ++PIIG + + + + + + L EG + LI Sbjct: 61 QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 S L + + R+ L ++G+I +G SG + A + Sbjct: 121 RASSVANLEGRVMRYPRMDKEVLSTY-SKGVICGSGCPSGIVQTRLRLGQFDEALRAAGE 179 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + ++G D ++ L H +R ++++A PL+ATN+S ++ EED A D + Sbjct: 180 LQDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAM 239 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + + DR + + Y +M +F DLPEA +NT+E+A RC+ + H Sbjct: 240 LCINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHED 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + +E + K GLE R A + D+E VI + Sbjct: 300 GAFMPKFPCPEG--WDETSLFLKKVEEGLERRYEGNVPAH------VLAQADYECGVICQ 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL L+FERFLNP Sbjct: 352 MQFPGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+S+PD D+DF + R +VI Y +KYGH++VAQ + +G+++ K AL+D R + +S Sbjct: 412 ERVSLPDIDVDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFS 471 Query: 471 QVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520 + + K +P V L I D +RE ++P R+ + + +EG Sbjct: 472 MGELVTKALPPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGIEG 531 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HA ++G P++ P+ + T F E GL+K DFLGL LT Sbjct: 532 LIRQTGVHACATIMGSEPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLT 590 Query: 581 LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +L + +D + IP DD ETY LL+ TLG+FQL+S GMR L+ ++PD Sbjct: 591 VIGDTLRNIEANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLKPDN 650 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQE 693 DI AL++LYRPGP+ Y RKNG +KI IHP + L ET G+IIYQE Sbjct: 651 FNDISALIALYRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLIIYQE 710 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV A++L+GYSL +ADVLRRAMGKK E + K++ F G ++G S+ A ++++L Sbjct: 711 QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWDVL 770 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 F+ Y FNK+H+AAY +ISY TA++KTHYP EF+AA + N +K + +AR+ Sbjct: 771 VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEARRMG 830 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871 I+++ P VN + + + + L AI+ VG I+ + + DF R Sbjct: 831 IKVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDFIRR 890 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V LNRR++ESL+ AGA D +R L Q + +++ + ++FA Sbjct: 891 VPLTALNRRLVESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFADLD 950 Query: 932 GTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 D I++ + + E+ +LG Y S HPL + +L + Sbjct: 951 AGADDGEAEALGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLRDMS 1010 Query: 983 YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + + +A ++ + + ++KG+R VT + + F Sbjct: 1011 IAQLIDRAPTMPERSQVMVAGLITNVDSRVSKKGNRWAIVTIEDMESSIQCLLF 1064 >gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633] gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633] Length = 1150 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 491/1039 (47%), Positives = 679/1039 (65%), Gaps = 23/1039 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL+V S YSLLEGA+ + PA A+TD+NNLF ALEFS+ Sbjct: 1 MSDAP-FVHLRVRSPYSLLEGAIRIKETAALCKTFSMPAAALTDSNNLFGALEFSEVLSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L I +++ G+ P +VLL + GY L++L S YL Sbjct: 60 EGVQPIIGVTLSIQVEE----PRPGERSRPDGT-LVLLAQSELGYANLMKLSSAAYLDVA 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + E ++GLI LTGG G ++R + A++ L + F DRLY+ Sbjct: 115 ATDEPHVPIDRVLE-HSDGLICLTGGFDGVLNRFVCAGRTGPAQELLDRLRARFPDRLYL 173 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQRH D E +V AY +LPLVATN F E Y+AHD L+ ++ VS + Sbjct: 174 ELQRHGRADDVTAEDWLVDRAYALDLPLVATNEPHFPRSELYQAHDALLCISEGAYVSME 233 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR ++T +H K+ + M F+DLPEA+ NTVEIA+RC+F + PILP F + Sbjct: 234 DRRKLTAEHDFKSGAAMADRFADLPEAIANTVEIAQRCAFRPRTSKPILPSFPTE----G 289 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E ELR +++AGLE RL++ I + Y +RLD+EL +I RM F GYFLIV+DF Sbjct: 290 DRNEAEELRARSIAGLEDRLSK--IELADTREAYFERLDYELGIIERMGFPGYFLIVSDF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK ++IPVGPGRGSGAGS+ A+ALTIT++DPLRF LLFERFLNP+R+SMPDFD+DFC Sbjct: 348 IQWAKAHDIPVGPGRGSGAGSLVAWALTITNLDPLRFGLLFERFLNPERVSMPDFDVDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRR EVIRYVQ +YG +RVAQIITFG+LQA+A +RDVGR LQ+P+ VDR+ K +PN+P Sbjct: 408 QDRRGEVIRYVQERYGQDRVAQIITFGTLQARAVVRDVGRVLQLPFGLVDRIAKQVPNNP 467 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P++ +A+ + + +E + D VDRL+ ++ +LEGL+R+ASTHAAG+VIGDRPL++L Sbjct: 468 AQPITLAEAVKTEPKLQEMQRNDEMVDRLINVALQLEGLFRNASTHAAGVVIGDRPLTEL 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++ + D+ I Sbjct: 528 VPLYQDPRSDLPATQFNMKWVEPAGLVKFDFLGLKTLTVISRALSYIESAGLDRPDMDAI 587 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D TY LL ++G+FQLES+GMR L ++PD IEDIIAL+SLYRPGP+ NI VY Sbjct: 588 SLTDPATYELLGVGASIGVFQLESTGMRDTLRKLKPDSIEDIIALISLYRPGPMKNIDVY 647 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK G+ + +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK Sbjct: 648 VDRKFGRAEPDYLHPDLEPVLKETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 707 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 KEEMD+Q+ RF GA K G+S+ A IF+L+A+FA YGFNKSHAAAYA+I+YQT W+K Sbjct: 708 KEEMDQQRVRFNEGAEKRGVSREKANYIFDLVAEFAGYGFNKSHAAAYALIAYQTGWLKA 767 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 ++P F+A M+L+ N EK+ F Q+A++ ++++PP VN DF + D +I Y+L A Sbjct: 768 NHPAAFMAGLMSLDSANTEKLAVFFQEAKRIGLEVLPPDVNASEADFSLEDGKIRYALGA 827 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 I+ VG + H+ + PF + DF RVD +++N+R E+L AGA D R + Sbjct: 828 IRNVGYSAMEHVADVRKAGGPFRDVFDFAERVDPRQVNKRAFENLARAGAFDTLEPDRAK 887 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQR 957 L S + + +Q + R + ++F GT ++ L + + R + E Sbjct: 888 ALASAEILLSVSQNAQSERDSAQASLFGGGGEGGGTKLERPNLPEPEPWDPVRRLDEELA 947 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKT-RKGSR 1014 +G+Y SGHPLD P L + G+ + + + RLAA+V +Q+K + R G + Sbjct: 948 AIGYYLSGHPLDDMMPALGRRGVVVFADLPSKAAEGARAARLAAVVRRRQEKVSQRSGEK 1007 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 +VT S+P+ E+EA P Sbjct: 1008 FAFVTLSDPSGEFEALVPP 1026 >gi|298246262|ref|ZP_06970068.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297553743|gb|EFH87608.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1172 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 331/1053 (31%), Positives = 551/1053 (52%), Gaps = 48/1053 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F HL VH+ YSLL+G + ++ + +AITD ++ ALEF + A G+ P Sbjct: 4 DFAHLHVHTEYSLLDGLSHIKKLVQQTKELGMQHLAITDHGAMYGALEFYKACRAGGVHP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC+ + M + K ++L+ GY+ L++L + + Sbjct: 64 IIGCEAYLT----EDMQDHSKRFSDDYYHLLLIAKNNTGYRNLMKLTTIANT-EGYHLRP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L + EGLI+ +G S I + Q A++ ++ +FG + LY+ +Q Sbjct: 119 RIDKKVLAQY-AEGLIVTSGCLSAEIPKLLLAGKQQEAQQAARWYQDVFGPENLYLEIQE 177 Query: 189 HRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 H G + Q+ +PL+ATN+ ++ ED ++HDVL+ + + Sbjct: 178 HHGVWDNDTPSPQARLNQMLYQMHKDLHIPLIATNDLHYIRAEDAQSHDVLLCIQTGRQI 237 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + R + + ++YLK+ +EM+ +F +LP+AL NTV +A +C H LP+ Sbjct: 238 DAQKRFKFDSREYYLKSPAEMLQLFPELPDALSNTVRLAEQCEVDPLAHKASLPQVQIP- 296 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L + G++ G + +++LD+E ++I +M ++ YFL+ Sbjct: 297 --PQYASANDYLYALCLEGVKY-------RFGELTEPIKRQLDYEFSIIMQMGYATYFLV 347 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D++ +A+ + I RGS AGS+ AY L IT++DPLR+ LLFERFLNP+R MPD D Sbjct: 348 VWDYVNYARSHGIR-CSARGSAAGSLLAYVLGITNVDPLRYQLLFERFLNPERADMPDID 406 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF DRR+EVI YV KYG + VAQ++TF ++ AK +++DV RA+ DR+ +LI Sbjct: 407 MDFPDDRREEVINYVAQKYGVDHVAQMVTFNTMAAKQSVKDVARAMGR-QDVGDRITRLI 465 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P P + ++ +P +++ + +LEG R+ HAAG++I PL Sbjct: 466 PTGPRITL-RGSLESVRDLTSTYEQNPEAREIIDQALELEGAVRNTGIHAAGVIISSEPL 524 Query: 540 SQLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 P+ S +TQF +E+ GL+KFDFLGL LT++ +L F+ + RG + Sbjct: 525 ELFAPLQLRDFRDASKGFITQFEQSHLEELGLVKFDFLGLSNLTIVDNTLKFIKEARGEE 584 Query: 596 VDLSLIPFD----------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 +D+ +P D + + LL+ T GIFQLE + MR+ ++ ++P +EDI+A Sbjct: 585 IDMEKLPLDLTGDPKQDRKRAKAFELLSAGETTGIFQLEGAKMREYIKQLKPTSVEDIMA 644 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +++LYRPGP+++I + + K+G+ + + + L+E+ G+I+YQ+QV+ IA L+G+ Sbjct: 645 MIALYRPGPMESIPYFIDAKHGRRAVQYLDERLKTWLEESYGIIVYQDQVLLIAVNLAGF 704 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 S + + R+A+ KKI E++ K FI G NG+S IA +FE + F YGFNK+H Sbjct: 705 SWGKVNKFRKALSKKIMHEVEGYKGDFIQGCIHNGMSPKIAEELFEQIKPFGGYGFNKAH 764 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AA+YAV+++ TA++K +Y EF+AA+MT E + KI + ++ ++I+ P VN Sbjct: 765 AASYAVVAFSTAYLKANYTAEFMAATMTTEAADARKIANAIAECKRMGVKILGPDVNKSS 824 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V + + + L AIKG+G I+EA A PF SL DFC+RV+ + + + LE+ Sbjct: 825 KGFTVEEGGVRFGLLAIKGIGDAPIDAIIEARQAKGPFKSLADFCTRVNPQSVGKGALET 884 Query: 885 LVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE- 941 L AGALD G R LL SL+ +Y + + + + ++F + D +L Sbjct: 885 LAKAGALDSLGRGQRHILLASLERAMQYGKGEREAQEHGLLSLFGDIEEHGGDLAFSLAT 944 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAM 1000 + E+ ++G Y + HPL IL G+ + + G + + M Sbjct: 945 NVEEIPMQQLLDWERELIGVYITQHPLTHLSDILASKGVTHHLGQITDELNGQKVIVGGM 1004 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ T+KG + + + FP Sbjct: 1005 IKEARRITTKKGDDMCVIQLEDMYGTVGVTVFP 1037 >gi|86742845|ref|YP_483245.1| DNA polymerase III subunit alpha [Frankia sp. CcI3] gi|86569707|gb|ABD13516.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3] Length = 1249 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 324/1072 (30%), Positives = 535/1072 (49%), Gaps = 52/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL VH+ YS+L+GA + + A PA+ +TD N+F A EF Q A + Sbjct: 1 MP-TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 AG++PIIG + + + + + +L + A Sbjct: 60 AGVKPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAA 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L S + + + R+ + + +EG+I TG SG + A Sbjct: 120 GLRNLFRLSSIASI-EGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 T++++FG D ++ L H +R ++ + L +ATN+S +++++ Sbjct: 178 LAAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 +H+VL+ V + R + Y SE + D + Sbjct: 238 GSHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVES 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + + + + + LR + GL R G A D +R+D+E+ Sbjct: 298 YDDVFKFVDRMPRYPVPAGETQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYEV 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M F YFL+VAD ++A+ I +GPGRGS GS+ AY L IT+++P+ +L+FE Sbjct: 352 GVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S PD D+DF + RR EVIRY+ +YG +RVAQI TFG+++AKAA++D R L Sbjct: 412 RFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRVL 471 Query: 466 QMPYSQVDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQ 516 Y+ D++ K +P D P+ + + + + R D V ++++ ++ Sbjct: 472 GYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTAR 531 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HAAG+++ PL ++P++R +T F E+ GL+K D LGL Sbjct: 532 GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLGL 591 Query: 577 KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +++ + + R V +DLS +P +D + + LL TLG+FQL+ MR L M Sbjct: 592 RNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRLM 651 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689 P DI A+++LYRPGP+ ++ + Y +RKNG+++I+ IHP ++P+L ET ++ Sbjct: 652 APTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHLV 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM IA+ L+GYSL AD+LRRAMGKK KE +DK+ RF +G + G + + Sbjct: 712 VYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQAL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T D+ +K+ + + Sbjct: 772 WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAET 831 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 R+ IQ++PP VN + F + I + L A++ VG I A ++S DF Sbjct: 832 RRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFADF 891 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +VD N+R ++SL+ AGA D G+ R L+ +N ++ ++F Sbjct: 892 LQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLFG 951 Query: 929 HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ E+ +LG Y S HPL+ + L + Sbjct: 952 DGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDTR 1011 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + G +++A ++ ++ + VT + E FFP Sbjct: 1012 IVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063 >gi|297571263|ref|YP_003697037.1| DNA polymerase III subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296931610|gb|ADH92418.1| DNA polymerase III, alpha subunit [Arcanobacterium haemolyticum DSM 20595] Length = 1182 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 362/1063 (34%), Positives = 567/1063 (53%), Gaps = 47/1063 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL VH+ YSLL+GA +N ++ ++A +QPA+AITD LF A E + A AAGI+P Sbjct: 5 SFAHLHVHTDYSLLDGAAKINKLVAEVARLEQPAVAITDHGYLFGAYEMYKAATAAGIKP 64 Query: 70 IIGCQLDIDMQ-DNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IIG + + T Q + + LL G L + S Sbjct: 65 IIGLEAYMTPGTSRFDQTRQLWGTPAQRSDDVSARGAYTHMTLLSENNTGMHNLFRMNSL 124 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L Q + R+ L+ +GLI G SG I A K + +F Sbjct: 125 ASLEGQMGKWPRMDRELLETYH-DGLIGTAGCPSGEIQTRLRLGQWDEALKAAGELQDIF 183 Query: 179 G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G D YV + H +R ++ ++++A PL+ATN+S ++ ED + D ++ + Sbjct: 184 GKDNFYVEVMDHGLDIERRVQNDLLKIARMIGAPLIATNDSHYVKREDRDIQDAMLCINS 243 Query: 237 STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + DR + D +Y+K+ EM F DLPEA++NT+ +A RC+ Q A + + Sbjct: 244 GSTLMDPDRFKFDGDGYYIKSSEEMHRQFEDLPEAIDNTLVVAERCNVSFQTTADGIS-Y 302 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++E + N+ AGL R G R+R D+E+ VI M F G Sbjct: 303 MPEFPVPPGEDETSWFINQVEAGLLKRY------NGTVPAHVRERADYEVGVITSMGFPG 356 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V+D+I+WAKKN I VGPGRGSGAGS+ AYAL IT +DP++ LLFERFLNP+R+S+ Sbjct: 357 YFLVVSDYIKWAKKNGIRVGPGRGSGAGSMVAYALEITQLDPIKHELLFERFLNPERVSL 416 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF RRDEVI+YV+ KYG ++VAQ++T+G+++ K AL+D R L MP+ D+L Sbjct: 417 PDIDVDFDDRRRDEVIKYVEEKYGSDKVAQVVTYGTIKTKQALKDAARVLGMPFQMGDQL 476 Query: 476 CKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P D ++++ I + FRE ++ R+ + + LEG+ R Sbjct: 477 TKALPPDVQGKSIAVKDIYNPEAARYNEAGEFREFVDSNAEAKRVFDFALGLEGMTRQTG 536 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA +++ L+ ++P+ + ++ +TQF E+ GL+K DFLGL LT+++ +L Sbjct: 537 VHACAVIMSSTALTDVIPIMKRLQDGAIITQFEYPQCEELGLVKMDFLGLSNLTVIEGAL 596 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + ++ IP DD ETY LL TLGIFQL+S GMRQ L+ M+PD DI A Sbjct: 597 TNIRNNGKEAPNIDEIPLDDVETYELLARAETLGIFQLDSPGMRQLLKQMKPDTFADISA 656 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 + +LYRPGP+ ++ Y RKNG ++ IHP ++ +L T G+I++QEQVM+IA Sbjct: 657 VSALYRPGPMGANSHTNYALRKNGLQEKTPIHPELATALEDILGNTHGLIVFQEQVMRIA 716 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q L+G++L +AD+LR+AMGKK + + KQ + F G +G S ++++L FA Y Sbjct: 717 QKLAGFTLGQADILRKAMGKKKADVLQKQFKGFAQGMRDHGYSDECINTLWDILVPFAQY 776 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+ AYA+++YQTA++K HYP E++A+ +T +N K+ + D R+ I++ P Sbjct: 777 AFNKSHSEAYALVTYQTAYLKAHYPSEYMASLLTSNQNNKTKVATYLADTRRMGIRVNVP 836 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 VN + N + L++++ VG I+E + + S +DF +V + LN Sbjct: 837 DVNKSMDVYSAVGNEVRVGLSSVRNVGKNVVDGIIETRKEKGEYTSFQDFLDKVPAAVLN 896 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 +R +E L+ AGA D GYSR L+ + + V++N ++F Sbjct: 897 KRAVECLIKAGAFDSLGYSRRALVSIHEEAIEAVLPVKRNEAGGQFDLFGGLGENNPIAQ 956 Query: 938 ---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIR 991 + + + + E+ +LG Y S HPL + L + + G + + Sbjct: 957 SFNVEIPDLPEWDKKEKLNIERDMLGLYVSDHPLSGLEAFLDRVADHTVLGIQNDENPVD 1016 Query: 992 GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ S Q + + + G T + E NFFP Sbjct: 1017 GQMVTVAGLITSVQTRISQKNGKTWATATIEDFTGSIEVNFFP 1059 >gi|86742759|ref|YP_483159.1| DNA polymerase III subunit alpha [Frankia sp. CcI3] gi|86569621|gb|ABD13430.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3] Length = 1183 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 324/1072 (30%), Positives = 535/1072 (49%), Gaps = 52/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SFVHL VH+ YS+L+GA + + A PA+ +TD N+F A EF Q A + Sbjct: 1 MP-TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 AG++PIIG + + + + + +L + A Sbjct: 60 AGVKPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAA 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L S + + + R+ + + +EG+I TG SG + A Sbjct: 120 GLRNLFRLSSIASI-EGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 T++++FG D ++ L H +R ++ + L +ATN+S +++++ Sbjct: 178 LAAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 +H+VL+ V + R + Y SE + D + Sbjct: 238 GSHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVES 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + + + + + LR + GL R G A D +R+D+E+ Sbjct: 298 YDDVFKFVDRMPRYPVPAGETQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYEV 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI +M F YFL+VAD ++A+ I +GPGRGS GS+ AY L IT+++P+ +L+FE Sbjct: 352 GVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+S PD D+DF + RR EVIRY+ +YG +RVAQI TFG+++AKAA++D R L Sbjct: 412 RFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRVL 471 Query: 466 QMPYSQVDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQ 516 Y+ D++ K +P D P+ + + + + R D V ++++ ++ Sbjct: 472 GYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTAR 531 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEGL R HAAG+++ PL ++P++R +T F E+ GL+K D LGL Sbjct: 532 GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLGL 591 Query: 577 KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +++ + + R V +DLS +P +D + + LL TLG+FQL+ MR L M Sbjct: 592 RNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRLM 651 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689 P DI A+++LYRPGP+ ++ + Y +RKNG+++I+ IHP ++P+L ET ++ Sbjct: 652 APTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHLV 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM IA+ L+GYSL AD+LRRAMGKK KE +DK+ RF +G + G + + Sbjct: 712 VYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQAL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T D+ +K+ + + Sbjct: 772 WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAET 831 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868 R+ IQ++PP VN + F + I + L A++ VG I A ++S DF Sbjct: 832 RRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFADF 891 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +VD N+R ++SL+ AGA D G+ R L+ +N ++ ++F Sbjct: 892 LQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLFG 951 Query: 929 HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++ E+ +LG Y S HPL+ + L + Sbjct: 952 DGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDTR 1011 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 + G +++A ++ ++ + VT + E FFP Sbjct: 1012 IVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063 >gi|297565291|ref|YP_003684263.1| DNA polymerase III subunit alpha [Meiothermus silvanus DSM 9946] gi|296849740|gb|ADH62755.1| DNA polymerase III, alpha subunit [Meiothermus silvanus DSM 9946] Length = 1262 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 393/1098 (35%), Positives = 568/1098 (51%), Gaps = 90/1098 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65 F HL H+ +SLL+GA L +++ + P +A+TD NLF A++F + A A Sbjct: 30 FAHLHQHTQFSLLDGAARLKDLIKWVKQVSPEE---PMLAMTDHGNLFGAVQFYKYATEA 86 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++PIIG + + + QGK + LL EGYQ L L SR YL + Sbjct: 87 EVKPIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAKDFEGYQNLCRLASRAYL-EGF 144 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184 RI L+E G+I L+G I + + AE+RLL + +FGD R ++ Sbjct: 145 YGKPRIDREILRE-HNAGIIALSGCLGAEIPQFILQERHEDAERRLLEYLSIFGDKRYFI 203 Query: 185 NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H ++ + ++V+ + A + L +VATN+ ++ +ED EAH V++AV Sbjct: 204 EVQDHGLPEQKKVNRVLKEFADKYGLGIVATNDGHYVRKEDAEAHAVVLAVQSKATWDDP 263 Query: 244 DRPRVTPDHYLKNRSEMVS---------IFSDLPEALENTVEIARRCSFILQVHAPILPR 294 +R + D + + + E +N++EI R C+ L Sbjct: 264 NRWKFPCDEFYVKTPQEMRSTLEGERELWGKRFDELFDNSLEIGRMCNVELVPKKVQYRI 323 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--------------------- 333 + + E LR +GL R Y Sbjct: 324 PKYPLPEG--RTEVTYLRELTFSGLLKRYPDRVTDDLYREFLRRLGRPVPHGDGEVLAKA 381 Query: 334 ------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 + R +EL V+ RM F GY LIV DFI WAK Sbjct: 382 LAELEDLEATRAYLPELKEGTPWGPWEILSRAVYELAVVERMGFPGYLLIVQDFINWAKS 441 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I VGPGRGS AGS+ AYA IT+IDPL + LLFERFLNP R+SMPD D DF RR E Sbjct: 442 QGISVGPGRGSAAGSLVAYATRITNIDPLAYDLLFERFLNPARVSMPDIDTDFSDARRGE 501 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488 VI YV+++YG E VAQI TFG+L +KAA++D R +P + D L KLIP P Sbjct: 502 VIEYVRSRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVVFGKPTPL 561 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI R DP V R++E+++KLEGL R +S HAAG+VI D PL +P+ R Sbjct: 562 EKAIETIPDLRAEMEKDPLVARVMEVAKKLEGLNRQSSVHAAGVVISDVPLQDYIPLMRA 621 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 + VTQ++M +E G +K DFLGL+TL+ L + + + +GV +D IP DD + Sbjct: 622 GDGEGKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIVKESKGVDIDYDAIPIDDEK 681 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T GIFQL+S+GM + G++P I+DIIAL +LYRPGP++NI Y R +G Sbjct: 682 TFELLGRGETKGIFQLDSAGMTSTVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHG 741 Query: 668 KEKIVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 +E + ++P+L+ET G+ +YQEQ+MQIA +GYSL EAD+LRRAMGKK Sbjct: 742 REAVAYPQFPNAAKYLEPILRETYGIPVYQEQIMQIASAAAGYSLGEADLLRRAMGKKKM 801 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEM K + +F GA++ GI + A +F+LL FA+YGFNKSH+AAYA+++YQTA++K H Sbjct: 802 EEMVKHRAQFKKGAAQRGIPEDEADRLFDLLEAFANYGFNKSHSAAYAILTYQTAYVKAH 861 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YPVEF AA +T+E + +K+ ++ + AR ++++PP +N F + + L+A+ Sbjct: 862 YPVEFHAALLTVERHDSDKVAEYIRAARAMGVEVLPPDINRSSFSFSAVGQNVLFGLSAV 921 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG I+ F SL DF RVDS N+RV ESL+ AGA D G R Q+ Sbjct: 922 KNVGEAPTEAIIRERERGGRFKSLPDFLKRVDSAVANKRVAESLIKAGAFDELGE-RGQM 980 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L +LD++ K+AQ ++ + +FA + + TL K + R E+ LG Sbjct: 981 LAALDDLLKWAQAERESANSGMMGLFADAQS----EPTLPKVPPLDEITRLRYEKEALGI 1036 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGN-------NIRLAAMVVSKQQKKTRKGSR 1014 Y +GHPL Y+ LR+ E+ + LA +V +K T+ G Sbjct: 1037 YVTGHPLQRYEG-LREAASCTIEDLPDYFHSQKNGKSRIRVLLAGLVEGIVRKPTKSGGM 1095 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + + E F Sbjct: 1096 MCKFMLGDETGAVEVVAF 1113 >gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688] gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688] Length = 1133 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 408/1022 (39%), Positives = 609/1022 (59%), Gaps = 34/1022 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +++G + + + + AAD+ PA+A+TD +NLF A++F + A G++P++GC L ++ + Sbjct: 1 MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 N ++LL T GY +L EL+SR YL +Q + I WL E G Sbjct: 61 NRDQP----------YRLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAGG 110 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200 EGLIML+G +G + +A + Q A + LF +R Y+ LQR + S+ Sbjct: 111 EGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRA 170 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 + LA +LP+VAT+ F+ +D++AH+ + +A V++ RP+ TP+ + K ++E Sbjct: 171 LALAGELDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAE 230 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR---NKAV 316 M ++F+D+P+AL N+VEIA+RC+ L + LP+F + + + L + Sbjct: 231 MATLFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL----DEYLVVQAKLGL 286 Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 L + Y RL+FE N+I +M F GYFLIVADFI WAK N +PVGP Sbjct: 287 EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 346 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ+ RD VI YV++ Sbjct: 347 GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 406 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 KYG V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+ +S + + Sbjct: 407 KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELGITLSDA-LEKEP 465 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + +E R + V+ LLE++ +LEGL R+ HA G++I +S P+Y + V+ Sbjct: 466 QLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVS 525 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHL 611 Q++ +E GL+KFDFLGL+TLT+L +L+ + +D +P +D TY L Sbjct: 526 QYDKDDVEAVGLVKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQL 585 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L + T +FQLES GM+ L+ +PDC EDIIALV+LYRPGP+D I + RK+G++++ Sbjct: 586 LKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRV 645 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 HP +P+LKET G+++YQEQVMQIAQ+++GYSL AD+LRRAMGKK KEEMD Q+ Sbjct: 646 EYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAV 705 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ GA KNG + A +F+L+ KFA YGFNKSHAAAYA+++Y TA++K HYP FLAA+ Sbjct: 706 FVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAAT 765 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTA 850 M+ +M+N + + F D ++++ P +N FK + D ++ Y L A+KG G Sbjct: 766 MSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLYGLGAVKGTGWAAI 825 Query: 851 RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 I+ A A+ PF L DFC R+D +K+NRRV+ESL+ AGA D +R LL + Sbjct: 826 EVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAI 885 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 A+ + + ++F + + TL K + + + + E+ LGFYFSGHP + Sbjct: 886 SAAE--QSGAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQEKSALGFYFSGHPYE 941 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 YK L + LA +V+ + + T++G + VT + E Sbjct: 942 GYKRELATFVRTTLGNLK--PQDQPQLLAGVVMGIRIRMTQRGK-MAIVTLDDATSRIEI 998 Query: 1030 NF 1031 Sbjct: 999 VV 1000 >gi|72160451|ref|YP_288108.1| DNA polymerase III subunit alpha [Thermobifida fusca YX] gi|71914183|gb|AAZ54085.1| DNA polymerase III, alpha subunit [Thermobifida fusca YX] Length = 1188 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 335/1075 (31%), Positives = 549/1075 (51%), Gaps = 55/1075 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VH+ YS+L+GA L + ++ A PA+A+TD N+F + EF Q + Sbjct: 1 MTNDP-FVHLHVHTEYSMLDGAAKLKPLFEEAARLGMPAVAMTDHGNMFGSYEFWQTSKE 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------------QGKTPFPTVPSIVLLVSTAEG 108 +G++PIIG + + + + + + + A+G Sbjct: 60 SGVKPIIGIEAYVAPESRFHKQRVFWGTGKTGDEAAEGGKDVSGGGRYLHLTMWARNAKG 119 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 + L L S + R+ L + + +EG+++ TG SG + + A Sbjct: 120 LRNLFRLSSLASF-EGYYTKPRMDLELMAQY-SEGIMVTTGCPSGGVQTRLRLGQEREAI 177 Query: 169 KRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + + +FG D ++V L H +R S ++ +A L V TN+S +++E+ Sbjct: 178 EYAGKLRDIFGRDSVFVELMDHGLDIEREVRSGLLTVAKKLGLRPVVTNDSHYVTEDQAA 237 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSF 283 AHD L+AV + R R Y +E + F + E NT+ IA + Sbjct: 238 AHDALLAVGVGKNLDDPTRFRFNGTGYYLKSAEEMRSLNTFDEWLEGCRNTLWIAEQVED 297 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + K + + + LR + + R G +++ R+R++ Sbjct: 298 GAYDDVFRPRDLMPKFPVPEGETQASWLRKEIERCIPNRYPNG------PSREVRERIEH 351 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL++I RM F YFL+VAD Q+A+++ I +GPGRGS GS+ AY L ITD+DPL SLL Sbjct: 352 ELSIIERMGFPAYFLVVADICQYARRSGIALGPGRGSATGSMVAYVLGITDLDPLEHSLL 411 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D+DF + +R ++IRYV +YG +RVAQI+TFG+++AKAA++D R Sbjct: 412 FERFLNPERVSMPDIDLDFDERKRGDMIRYVTERYGEDRVAQILTFGTIKAKAAIKDATR 471 Query: 464 ALQMPYSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEI 514 L PY+ D++ K P S + + R+ ++P V ++ E Sbjct: 472 ILGYPYALGDKITKAFPPAVGGKEIPLSAVFDESHPRYNEAAELRQLIESNPDVRKVYET 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEGL R HAAG+++ PL ++P+++ +T F E+ GL+K DFL Sbjct: 532 ASGLEGLTRGTGVHAAGVILSAEPLLDVIPLHKRETDGAIITGFPYPQCEEMGLLKMDFL 591 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++ + G +++LS +P D+ +TY LL+ TLG+FQL+ MR L+ Sbjct: 592 GLRNLTVIDDAIQNIKANEGKEINLSALPLDNKKTYELLSRGDTLGVFQLDGGPMRALLK 651 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKET----QG 687 M+P DI A+++LYRPGP+ + Y +R NG+++I IHP + L Sbjct: 652 RMEPKKFGDIAAVLALYRPGPMAANAHNDYADRSNGRQEITPIHPELKEALDPILAESFH 711 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ +F G G SK Sbjct: 712 LIVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEALEKEYTKFSEGMLSRGFSKEAMQ 771 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++++ F+ Y FNKSH A Y +ISY TA++K ++P ++AA +T D+ +K+ + Sbjct: 772 ALWDVMLPFSGYAFNKSHTAGYGMISYWTAYLKANHPASYMAALLTSVADDKDKMAVYLA 831 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866 + R+ I+++PP VN + F N I + L A++ VG I++ + F S Sbjct: 832 ECRKMGIRVLPPDVNESGLQFTPVGNDIRFGLGAVRNVGANVVESILKTREEKGKFTSFV 891 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF S+++ N+RV+ESL+ AGA D G+SR+ L + + +K + ++ Sbjct: 892 DFLSKIELTVCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVLSSKKQEAHGQFDL 951 Query: 927 FAHEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F + F + + E+ +LG Y S HPL + IL + Sbjct: 952 FGGGDEEDGGESAPLGFSINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERILARASD 1011 Query: 981 KGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + V + +R+A ++ +++ + G++ T + EA FFP Sbjct: 1012 APLLDVVNGERRNNDEVRIAGLISKVEKRINKAGNQWAIATVEDLDASIEALFFP 1066 >gi|305433235|ref|ZP_07402391.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli JV20] gi|304443936|gb|EFM36593.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli JV20] Length = 1200 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 377/1061 (35%), Positives = 589/1061 (55%), Gaps = 52/1061 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ + L GYQ L+ L S+ Y+ R Sbjct: 64 IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L+E +EGLI + G ++ + A++ L +KK+FGD Sbjct: 118 INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ DR R + + Y+K+ ++M +F+D+PEA+ENT EIA +C+ L + Sbjct: 237 LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNL-----GNPTPP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342 ++ + + G E + ++Y+ RL+ Sbjct: 292 NFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKHEEYKTRLE 351 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+N+I +MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ AY+L ITD+DP+ +SL Sbjct: 352 VEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSL 411 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+ +RDV Sbjct: 412 LFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVA 471 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R M D L KLIP + + + + +E P + E ++ LEGL Sbjct: 472 RVCDMSIPDADELAKLIPEELKITLDAA-YEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590 Query: 581 LLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L+ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650 Query: 640 IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++LYRPGP+++ + + +RK+G +KI ++ +L+ T G+I+YQEQVMQ Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++EL+ KFA Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++ Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830 Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 PPSVN +F G + I Y L AIK VG +++EA F +++DF SR+ Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + K+N+R LESL+ AGA D FGY+R L ++DN+ + ++ + R N ++F ++ Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950 Query: 933 TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 T ++ + K + E E+ +LG Y SGHPLD + +++ + Sbjct: 951 TVGLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKG 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + S + ++ R G + + +E F Sbjct: 1011 SGEILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051 >gi|314967462|gb|EFT11561.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA1] Length = 1190 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 337/1077 (31%), Positives = 541/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ + +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|57167730|ref|ZP_00366870.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228] gi|57020852|gb|EAL57516.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228] Length = 1200 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 377/1061 (35%), Positives = 589/1061 (55%), Gaps = 52/1061 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ + L GYQ L+ L S+ Y+ R Sbjct: 64 IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L+E +EGLI + G ++ + A++ L +KK+FGD Sbjct: 118 INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ DR R + + Y+K+ ++M +F+D+PEA+ENT EIA +C+ L + Sbjct: 237 LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNL-----GNPTPP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342 ++ + + G E + ++Y+ RL+ Sbjct: 292 NFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKHEEYKTRLE 351 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+N+I +MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ AY+L ITD+DP+ +SL Sbjct: 352 VEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSL 411 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+ +RDV Sbjct: 412 LFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVA 471 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R M D L KLIP + + + + +E P + E ++ LEGL Sbjct: 472 RVCDMSIPDADELAKLIPEELKITLDAA-YEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT Sbjct: 531 RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590 Query: 581 LLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L+ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 591 LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650 Query: 640 IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++LYRPGP+++ + + +RK+G +KI ++ +L+ T G+I+YQEQVMQ Sbjct: 651 FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++EL+ KFA Sbjct: 711 IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++ Sbjct: 771 GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830 Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 PPSVN +F G + I Y L AIK VG +++EA F +++DF SR+ Sbjct: 831 PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + K+N+R LESL+ AGA D FGY+R L ++DN+ + ++ + R N ++F ++ Sbjct: 891 EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950 Query: 933 TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 T ++ + K + E E+ +LG Y SGHPLD + +++ + Sbjct: 951 TVGLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKG 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + S + ++ R G + + +E F Sbjct: 1011 SGEILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051 >gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga ochracea F0287] Length = 1485 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 332/1085 (30%), Positives = 545/1085 (50%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL H+ +S+L+ S+ +++ A ++ PA+A+TD+ N+ +A F Q Sbjct: 255 FGHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314 Query: 67 -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 I+PIIGC+ +I + ++ +V+L +GY Sbjct: 315 AKNKEAEEKSETPTETLIKPIIGCEFNIC------ENHLDRSRQDNGYQVVILAKNKQGY 368 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S RI + +++ ++ LI+L+GG +G + ++ A++ Sbjct: 369 HNLTKMASIASTKG-FYYVSRIDKAIVEQYKSD-LIVLSGGMNGEVPSKILNIGTKQAKE 426 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FG+ Y+ + RH D R +V+ + + + L+ATNN+ +L ++D AH Sbjct: 427 ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSRKYGVKLIATNNTFYLHKKDANAH 486 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 D+L+ V + N +++ ++ E I+ Sbjct: 487 DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTTAEMKTLFKDIPEAILNIQEIIDKV 546 Query: 289 API-------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335 P F +E +K E N LR+ G + + + Sbjct: 547 EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 + R+RLDFEL++I + + GYFLIV DFI A++ N+ VGPGRGS AGS A+ L IT++ Sbjct: 600 EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DP+++ LLFERFLNPDR+SMPD DIDF R +VI YV +KYG +VA+IIT+G + AK Sbjct: 660 DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719 Query: 456 AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501 +A++D R L +P + +RL L + + + + +++ + Sbjct: 720 SAIKDTARVLDVPLQESNRLASLVPNGVSSLGKMFSWDDKTLKEKVRSEELPKVDELKRL 779 Query: 502 --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + + ++ + +EG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 780 LAGEGEEDSTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618 +E AGL+K DFLGL TLTL++ +++ + Q D P DD +TY L T+ Sbjct: 840 NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 GIFQ ES+GM++ + ++P D+IA+ +LYRPGP++ I + RK+G E I P + Sbjct: 900 GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK + K K +FIS AS+ Sbjct: 960 EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFISQASE 1019 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G I+ KFA Y FNKSH+ YA + YQTA++K +YP E++AA ++ M++ Sbjct: 1020 RGHDTQKLEKIWTDWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 ++ I F ++ + I+++PP VN F V + I + + A+KGVG I+E Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 ++P+ S+ D RVD K +N++ ES+ AG D F R Q + L+ Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGVPFLEKAI 1199 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++ ++++ + ++F E + + K + + E+ V+G Y SGHPLD Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K L+ E + +A MV Q + + G G+ T + Y Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319 Query: 1028 EANFF 1032 E F Sbjct: 1320 EFKLF 1324 >gi|315931919|gb|EFV10874.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 327] Length = 1088 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 381/1058 (36%), Positives = 587/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P +F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 297 EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 482/1038 (46%), Positives = 653/1038 (62%), Gaps = 26/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL +GA+ + I + PA+AITDT NLF ALEFSQ Sbjct: 1 MPHA-DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQ+ + + P +VLL G L L S+ +L Sbjct: 60 KGVQPIIGCQV--------GLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGD 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L E EGLI+LTGG+ GP+ R + L FGDRL V Sbjct: 112 T-AEPTVTLDVLCER-AEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAV 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH ++ E ++ LA LPLVATN F E YEAHD L+ +A ++++ Sbjct: 170 ELHRHGLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAER 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K + M +F+DLPEA +NT+ IARRC+ ++ P+LP + + Sbjct: 230 DRWRVTPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQP--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EE LR A GL RLA+ + Q YR RL FEL++IA+M F GYF+IVADF Sbjct: 287 GATEEQTLRAMAEDGLARRLARMDMD-DATRQVYRDRLTFELDIIAKMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+++ +LIPN+P Sbjct: 406 QDRRDEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ QAI + R +E R D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L Sbjct: 466 AKPVTLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL V VDL+ +P Sbjct: 526 VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDAPTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHG-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMDKQ+E F GA GI A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK + Sbjct: 705 AEMDKQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---DNR--IYY 837 +PV FLAA M+L + +K+ Q+A + I ++PP +N DF V D R I Y Sbjct: 765 HPVPFLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAA+K VG ++ + D+PF L D +RVD ++LN+ +E+L AGA D + Sbjct: 825 ALAAVKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956 R + + + + + A + + +F T + + L + R E Sbjct: 885 RALVAAAAETVLRRANTKAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEA 944 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLD Y +LR++G A + +++A VV ++++ TR GS+ Sbjct: 945 EAIGFHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSK 1004 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E F Sbjct: 1005 MAWVRLSDSSGGCEVTLF 1022 >gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1142 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 482/1038 (46%), Positives = 653/1038 (62%), Gaps = 26/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL +GA+ + I + PA+AITDT NLF ALEFSQ Sbjct: 1 MPHA-DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQ+ + + P +VLL G L L S+ +L Sbjct: 60 KGVQPIIGCQV--------GLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGD 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L E EGLI+LTGG+ GP+ R + L FGDRL V Sbjct: 112 T-AEPTVTLDVLCER-AEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAV 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH ++ E ++ LA LPLVATN F E YEAHD L+ +A ++++ Sbjct: 170 ELHRHGLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAER 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K + M +F+DLPEA +NT+ IARRC+ ++ P+LP + + Sbjct: 230 DRWRVTPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQP--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EE LR A GL RLA+ + Q YR RL FEL++IA+M F GYF+IVADF Sbjct: 287 GATEEQTLRAMAEDGLARRLARMDMD-DATRQVYRDRLTFELDIIAKMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+++ +LIPN+P Sbjct: 406 QDRRDEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ QAI + R +E R D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L Sbjct: 466 AKPVTLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL V VDL+ +P Sbjct: 526 VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDAPTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHG-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMDKQ+E F GA GI A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK + Sbjct: 705 AEMDKQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---DNR--IYY 837 +PV FLAA M+L + +K+ Q+A + I ++PP +N DF V D R I Y Sbjct: 765 HPVPFLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAA+K VG ++ + D+PF L D +RVD ++LN+ +E+L AGA D + Sbjct: 825 ALAAVKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956 R + + + + + A + + +F T + + L + R E Sbjct: 885 RALVAAAAETVLRRANTQAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEA 944 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLD Y +LR++G A + +++A VV ++++ TR GS+ Sbjct: 945 EAIGFHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSK 1004 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E F Sbjct: 1005 MAWVRLSDSSGGCEVTLF 1022 >gi|148926683|ref|ZP_01810364.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|145845202|gb|EDK22297.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 1200 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 380/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 286 -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + E+ + ++ GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E E+ +LG Y SGHPLD + + + E Sbjct: 953 VQVNFTPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|157415005|ref|YP_001482261.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81116] gi|157385969|gb|ABV52284.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 81116] gi|307747643|gb|ADN90913.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni M1] Length = 1200 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 381/1058 (36%), Positives = 587/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P +F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 297 EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|86153288|ref|ZP_01071492.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613428|ref|YP_001000414.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|85843014|gb|EAQ60225.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249433|gb|EAQ72393.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 1200 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R K+ + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205] gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205] Length = 1236 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 364/1117 (32%), Positives = 548/1117 (49%), Gaps = 104/1117 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G + +++DK D +A+TD +F E + Sbjct: 3 DFVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINKDR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ +PIIGC++ + K + + +++L GY+ LI+LVS Sbjct: 63 KKEGLEPFKPIIGCEMYVAR--RTKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R + L++ E LI+ + +G + + A + + LFG Sbjct: 121 W-VDGYYMRPRTDRADLEKYH-EDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFG 178 Query: 180 DRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 D Y+ LQRH+ D + +++++A + LV TN+ F +E Sbjct: 179 DDYYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETA 238 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 EAHD L+ +A + +R R + + K R EM +FSD+PEAL NT+E+ + Sbjct: 239 EAHDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYS 298 Query: 286 QVHAPILPRFIEKECDDIQ----------------------------------------- 304 H PI+P F E + Sbjct: 299 IDHGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGY 358 Query: 305 ------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 K E LR+ A G + +D + ++FEL+V+ M F GYFL Sbjct: 359 DKIYRIKFEAEYLRHLAYEGAKKLYGDPL------PEDVDEHVNFELHVMKTMGFPGYFL 412 Query: 359 IVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 IV+DFI+ A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 IVSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPD 472 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D DF D R +V+R+V +KYGHE A IIT+GS+ K +++DV R ++P + + LCK Sbjct: 473 IDTDFDDDGRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCK 532 Query: 478 LIP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 IP D A AI REA DP ++ ++ LEG R HA G + Sbjct: 533 AIPDRLPDGAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFI 592 Query: 534 IGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 I P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ ++++ Sbjct: 593 ICRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKV 652 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + Q VDL IP DD TY L T+G FQ ES GM++ L ++P ED+IA+ Sbjct: 653 IKQTTGDVVDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMN 712 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+D I + RKNGK+ I P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 ALYRPGPMDYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTR 772 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 GESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHAT 832 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I+ + P VN Sbjct: 833 CYSWVAYQTAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRV 892 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I + L+AIKG+G A I+ + P+ S+ DF RVD +NR+ E+L Sbjct: 893 FGVNEHGEIRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETL 952 Query: 886 VFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +G D FG R Q LD + +Y Q ++ + ++F + Sbjct: 953 ALSGGFDSFGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFGGTEAIEIATP 1012 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI 995 + ++ R E+ ++G Y S HPLD Y IL + E + ++ Sbjct: 1013 PIPDAESWSTIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELAKKEDV 1072 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L ++ + K T+ G G+VT + E F Sbjct: 1073 VLGGIITGVKSKFTKTGKPCGFVTLEDFEGSGELALF 1109 >gi|297161306|gb|ADI11018.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1] Length = 1181 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 339/1070 (31%), Positives = 535/1070 (50%), Gaps = 51/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F Q+A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACQEMGMTHIAMTDHGNLHGAYDFYQQATG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI PIIG + + + + + S G L Sbjct: 60 AGITPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWASNKAGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y+ + R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSREAVAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S DR R Y S D +A + + + Sbjct: 239 CVQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + D E + + + G+E R G +D +++ ++E++VI +M Sbjct: 298 KRDLMPRFDVPEGFTEVSWFQEEVKRGMERRYPAGV------PEDRQKQAEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIDHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VAQI T+G+++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D P+S ++ + R + V ++++ ++ +EGL Sbjct: 472 GDRITKAMPADVLGKGIPLSGITDDKHPRYSEAAEVRGMYENEADVKKVIDTARGIEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ VTQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETVTEHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +GV + L +P DD +TY LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVRANKGVDLKLLELPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRMMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI A+ +LYRPGP+ + Y RKN +++I IHP ++ LK T G+++YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHINYALRKNAQQEITPIHPELEEPLKEVLGITYGLVVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+L+GYSL +AD+LRRAMGKK KE +DK+ F G + G S ++++L Sbjct: 712 QKAAQVLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQKGCRERGYSDAAIQAVWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++ P+VN +F GD+ I + L A++ VG I+ + S D+ +V+ Sbjct: 832 VLTPNVNESEANFAAQGDDVILFGLTAVRNVGANVVEAIIRGRKSKGKYSSFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F G Sbjct: 892 AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGD 951 Query: 934 FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 S + + + E+ +LG Y S HPL + +L + Sbjct: 952 DSGGDGPGFGLDVEFSDI-EWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAIAQ 1010 Query: 986 SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A + FFP Sbjct: 1011 LTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1060 >gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31] gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31] Length = 1143 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 493/1042 (47%), Positives = 674/1042 (64%), Gaps = 48/1042 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSAL 56 FVHL+V S+YSLLEGA+ + I + D NNLF AL Sbjct: 9 FVHLRVRSAYSLLEGAIKADKIPGLAAAAGMPAAGLV--------------DRNNLFGAL 54 Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 E+S + G+QPIIGC L + + + P+I LLV GY L EL Sbjct: 55 EYSVYSKDYGVQPIIGCALAVS-----GVGAGPTERWARTPTITLLVQNERGYLNLSELS 109 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S YL + + + E EGLI+L+GG+ GP+D + E L+ ++ Sbjct: 110 SMAYLESGEMAEPVVPWAKVVE-HAEGLILLSGGTDGPVDALLAAGKTAEGEAALVEMQR 168 Query: 177 LFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FGDR YV LQRH + E +V AY H+ PLVATN+ + E Y+AHD L+ ++ Sbjct: 169 AFGDRFYVELQRHGLPRQAAAEPGLVHWAYEHDAPLVATNDVYYAKPELYDAHDALLCIS 228 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 V Q +R RVTP+H+ K+ ++M +F+DLPEA +NT++IARRC+F++Q PILP F Sbjct: 229 DGAFVGQDERRRVTPEHWFKSSADMRKLFADLPEACDNTLDIARRCAFMVQKRDPILPSF 288 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + E EL ++A GL RL + + Y RLDFEL++I +M F G Sbjct: 289 PTGDG----RSEPEELTHQAKEGLRKRL--DGLELAVDEKVYWDRLDFELSIIIKMGFPG 342 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+DFI+WAK++ IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SM Sbjct: 343 YFLIVSDFIKWAKEHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSM 402 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P VDRL Sbjct: 403 PDFDIDFCQERREEVIVYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRL 462 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 CK++PN+PA PV+ QAI + R ++AR D +V L+++ +LEGL+R+ASTHAAG+VI Sbjct: 463 CKMVPNNPAAPVTLAQAIEIEPRLKQARDEDGNVKACLDVALQLEGLFRNASTHAAGVVI 522 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 GDRPL+QL P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L +RG Sbjct: 523 GDRPLTQLTPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGE 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DLS +PFDD +TY LL + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP Sbjct: 583 IIDLSRLPFDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGP 642 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +DNI + + K ++ + +HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LR Sbjct: 643 MDNIDTFVDCKFDRKPVDYLHPSLEVVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLR 702 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK KEEMD QK RF++GA + + + + +IFEL+AKFA YGFNKSHAAAYA+I+Y Sbjct: 703 RAMGKKKKEEMDLQKIRFVAGAKEKDVPEAQSGSIFELVAKFAGYGFNKSHAAAYALIAY 762 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K + PVEFLAASM+L++ N +K+ F QDAR+F+I + PP VN DF+V + Sbjct: 763 QTAWLKANTPVEFLAASMSLDLSNTDKLAVFHQDARRFDIVVRPPDVNRSGADFEVENGE 822 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y+L A++ VG +H++ + PF + DF RVD K +N+R +E+L AGA D Sbjct: 823 VLYALGAVRNVGLEAMKHLVAIREEGGPFRDIFDFVERVDPKLVNKRAIENLARAGAFDS 882 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R Q+ S D + + Q + +R +F + + + L+K + + Sbjct: 883 LSKNRAQIFASADVLIAHGQSIAADRQGGQHALFGGDPA--AGRPRLKKTEPWSQVDLLD 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRK 1011 E +GFY +GHPLD +LR+ E G R+ +V +Q++ ++ Sbjct: 941 EELAAVGFYLTGHPLDDMVGVLRRRRTHMLTEVIPRAEAGMEAFRMCGVVRRRQERASQS 1000 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G R +V+ S+P+ EYE FP Sbjct: 1001 GERFAFVSLSDPSGEYEV-LFP 1021 >gi|86151776|ref|ZP_01069990.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85841405|gb|EAQ58653.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 1200 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 382/1058 (36%), Positives = 588/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F ++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R K+ + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|315108557|gb|EFT80533.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA2] Length = 1190 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 337/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFDEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|283956127|ref|ZP_06373614.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 1336] gi|283792447|gb|EFC31229.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 1336] Length = 1200 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 381/1058 (36%), Positives = 588/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEKY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGISDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + P +F Sbjct: 237 LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 297 EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHKEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G++ I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGNDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|289425264|ref|ZP_06427041.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187] gi|295130708|ref|YP_003581371.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] gi|289154242|gb|EFD02930.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187] gi|291376065|gb|ADD99919.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] gi|313772287|gb|EFS38253.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL074PA1] gi|313792016|gb|EFS40117.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA1] gi|313802034|gb|EFS43268.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA2] gi|313810152|gb|EFS47873.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA1] gi|313812820|gb|EFS50534.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA1] gi|313827619|gb|EFS65333.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA2] gi|313830483|gb|EFS68197.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL007PA1] gi|313833519|gb|EFS71233.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL056PA1] gi|313838855|gb|EFS76569.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL086PA1] gi|314962672|gb|EFT06772.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA1] gi|314973483|gb|EFT17579.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA1] gi|314976163|gb|EFT20258.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL045PA1] gi|314983815|gb|EFT27907.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA1] gi|315077888|gb|EFT49939.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA2] gi|315080513|gb|EFT52489.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL078PA1] gi|315096030|gb|EFT68006.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL038PA1] gi|327326310|gb|EGE68100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA2] gi|327445796|gb|EGE92450.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA2] gi|327448221|gb|EGE94875.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA1] gi|327453265|gb|EGE99919.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL092PA1] gi|328760728|gb|EGF74294.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL099PA1] Length = 1190 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|317057698|ref|YP_004106165.1| DNA polymerase III subunit alpha [Ruminococcus albus 7] gi|315449967|gb|ADU23531.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7] Length = 1141 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 356/1040 (34%), Positives = 563/1040 (54%), Gaps = 38/1040 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 FVHL +HS YSLL+GA ++ + ++ Q A A+TD N+F+A+EF AAGI+ Sbjct: 2 SDFVHLHLHSEYSLLDGACRIDRLAARLKEVGQTACAVTDHGNMFAAIEFYNTMRAAGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC++ + ++ P ++LL GY+ LI++VS Y + Sbjct: 62 PILGCEVYVARGSREDKDHREGKP----YHLILLCENETGYRNLIKMVSLGYT-EGFYSR 116 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 RI L L++ +GLI L+G +G + + + AE+ L ++ +FG D ++ +Q Sbjct: 117 PRIDLELLRKYH-DGLICLSGCVAGELSTKIANGNYKGAEETALLYRDIFGADNYFIEIQ 175 Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 +HR ++ +++L+ +PL TN+ +L ED +A VLM ++ +T Sbjct: 176 KHRDPVEQRVMPSLIRLSQDTGIPLCLTNDCHYLRREDSQAQQVLMCISTATTTDDPAIS 235 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + Y+K+ EM ++ +PEA+ NTV IA RC ++ + +LP D + Sbjct: 236 FASDEFYVKSAEEMAELYPAIPEAMLNTVRIADRCDVEIKFGSTVLPY----FGIDGVSD 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LRN GL +++ +R+++EL+VI M ++ Y+LIV DFI + Sbjct: 292 NAAYLRNMCREGLYR-------RYDEPSEEALERMEYELSVINGMGYTDYYLIVWDFINY 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ AY + ITDIDPLR+ LLFERFLNP+R++MPDFDIDFC + Sbjct: 345 AKSHDIPVGPGRGSGAGSLCAYCIGITDIDPLRYDLLFERFLNPERVTMPDFDIDFCVEG 404 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R VI YV KYG + VAQI TFG+L AK ALRD RA+ PY+ DRL K P Sbjct: 405 RQRVIDYVVEKYGADHVAQIATFGTLGAKQALRDAARAMGEPYATGDRLAKAAPRSM--- 461 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + ++ R+ +D + ++++ + +EG+ R+ STHAAG+VI P+ VP+Y Sbjct: 462 LLSDSVEKIPELRDMYNSDMKLRKIIDTAILIEGMPRNVSTHAAGVVITKEPVDFYVPLY 521 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 R TQ+ M +E+ GL+K DFLGL LT+++ D + + D+ IP DD Sbjct: 522 --ARDGAVSTQYTMTVLERLGLLKIDFLGLSNLTIIKHCCDEIKKTHPDFDIEHIPLDDK 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y +L+ T G+FQ ES GM + ++P IED+IA++SLYRPGP+D+I Y ++ Sbjct: 580 AVYDMLSRGETEGVFQFESGGMTATIMKLRPSGIEDLIAVLSLYRPGPMDSIPNYIRCRH 639 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 + + HP++ P+L+ T G I+YQEQVMQI + L+GYS + AD++RRAM KK + ++ Sbjct: 640 DPKLVRYKHPMLKPILEVTYGCIVYQEQVMQIFRSLAGYSFARADLVRRAMSKKKADVLE 699 Query: 727 K------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + GA NG+ + A +IF+ + FA Y FNKSHA AYA ++Y+TA++K Sbjct: 700 NERKAFVWGDEEVCGAVANGVPEKTANDIFDEMTSFASYAFNKSHATAYATVAYRTAYLK 759 Query: 781 THYPVEFLAASMTLEMDN-VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 H+ E+ ++ MT ++ EK+ + AR+ + ++PP +N F + I + L Sbjct: 760 CHFFKEYFSSLMTDAINESTEKLYGYISAARKRGVAVLPPDINKSIGGFSGEGDSIRFGL 819 Query: 840 AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IKG+G+ + I+ F +L+DFC R+ + ++ + +E+L+ AGA+D +R Sbjct: 820 LGIKGLGSNSIAAIIRERTLGGDFLNLQDFCRRMQGRDIHTKAVEALIKAGAMDPLPLNR 879 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQ 956 + L + I +R + F G DK ++ + + + Sbjct: 880 HEKLINCGIIMGDLSRAASDRLEGQLDFFGSGGASGDGLDKPMIDAEELTSEELLLYE-H 938 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMVVSKQQKKTRKGS 1013 LG Y S HP+D +P R G + G + MV K+ T+KG Sbjct: 939 EALGMYLSAHPIDTCEPFARAAGFTSVRTILEAGLKGEGRTADILVMVTRKRSIATKKGD 998 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + + + E E FP Sbjct: 999 MMCFAACEDKTGEMEVIVFP 1018 >gi|327330381|gb|EGE72130.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL097PA1] Length = 1190 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 336/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++ ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVATAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|289428306|ref|ZP_06429993.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165] gi|289158455|gb|EFD06671.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165] gi|313807645|gb|EFS46132.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA2] gi|313818682|gb|EFS56396.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA2] gi|313825324|gb|EFS63038.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA1] gi|314925061|gb|EFS88892.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA3] gi|314960402|gb|EFT04504.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA2] gi|314978578|gb|EFT22672.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA2] gi|314987996|gb|EFT32087.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA2] gi|314989806|gb|EFT33897.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA3] gi|315084184|gb|EFT56160.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA2] gi|315085527|gb|EFT57503.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA3] gi|315088416|gb|EFT60392.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA1] gi|327331815|gb|EGE73552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA3] gi|327443592|gb|EGE90246.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA2] gi|328753347|gb|EGF66963.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL020PA1] Length = 1190 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|315926833|gb|EFV06207.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 1088 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 378/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 286 -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + E+ + ++ GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|328881766|emb|CCA55005.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712] Length = 1179 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 336/1068 (31%), Positives = 533/1068 (49%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANNTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAVDSSDAWQEGCRNTLLVAEQVSTDGMFV 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + D E R + + G+ R G +D +++++E++ I M Sbjct: 298 EKNLMPKFDIPEGYTEVTWFREETMRGMHRRFPDG------IPEDRMKQVEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RISMPDVDIDFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEKPLEEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA K G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEAGAKKKGFSDEAIKALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I++ + + DF +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIKTRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGDE 951 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 +D+ S E+ +LG Y S HPL + +L + Sbjct: 952 STDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|167005356|ref|ZP_02271114.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] Length = 1169 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R K+ + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|313820452|gb|EFS58166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA1] gi|313822742|gb|EFS60456.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA2] Length = 1190 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP] gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP] Length = 1158 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 414/1048 (39%), Positives = 608/1048 (58%), Gaps = 39/1048 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS +S++ G + ++ AA Q A+A+TD +N ++F ++ Sbjct: 1 MTQ-PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLT 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PIIG + + + + + LL +GY + L+SR Y Sbjct: 60 AGLKPIIGADIYV----------RSDPTSEDIFELTLLAKNNQGYHNITVLLSRAYQQGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + +WL E+ EG+I+L+GG SG + +A + Q A + +++ F D Y+ Sbjct: 110 V-EFPIVEKAWLAEL-NEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYYL 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +L R D R Q VQ A ++LPLVA N+ +FL E+D++AH++ +A+ S + Sbjct: 168 SLCRTGRSDEERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + +P Y ++ EM ++F+DLP+AL N+++IA RC+ +++ + Sbjct: 228 KRPQKYSPQQYFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGE-----YFLPNFPT 282 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E+ L K+ GLE RLA A + Y +RL EL+VI +M F GYFLI Sbjct: 283 GELSTEDFLIKKSQEGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLI 342 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD Sbjct: 343 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDFD 402 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L PY+ VDR+ KLI Sbjct: 403 VDFCMDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 463 PADPGMTL-AKAFEAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +L+ + QR Sbjct: 522 TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGKP 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + + IP DD ++ LL T +FQLES GM+ + ++PDC EDIIALV+L+RPGP Sbjct: 582 PIRIENIPLDDKPSFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641 Query: 655 IDNIVVYNN-------RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +++ +V N + H + P+L+ T G+I+YQEQVMQIAQ L+GY+L Sbjct: 642 LESGMVQNFIDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYTL 701 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM Q++ F GA + GI +A+ IF+L+ KFA YGFNKSH+A Sbjct: 702 GSADLLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHSA 761 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF+AA MT EMDN +KI + + ++PP VN+ Sbjct: 762 AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKHR 821 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + +I Y L AIKGVG I+EA F L D +RVD KK+NRR ESL Sbjct: 822 FSVNEKGQIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFESL 881 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + +GA D G R L+++L++ K + K ++F T + Sbjct: 882 IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTP 941 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + E E+ LG Y SGHP+ + L E T RG + +A ++V+ Sbjct: 942 KWSEQAVLEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVAS 1001 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T++GSR+G T + A + + F Sbjct: 1002 RIAVTKRGSRLGIATLEDRAGKIDITLF 1029 >gi|256379743|ref|YP_003103403.1| DNA polymerase III subunit alpha [Actinosynnema mirum DSM 43827] gi|255924046|gb|ACU39557.1| DNA polymerase III, alpha subunit [Actinosynnema mirum DSM 43827] Length = 1176 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 340/1061 (32%), Positives = 526/1061 (49%), Gaps = 42/1061 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SF HL VH+ YS+L+GA L ++ + A AITD N++ A +F ++A AAG+ Sbjct: 2 SDSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTAAAITDHGNMYGAYDFFRQATAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +P+IG + + + + + T +G L++ S Sbjct: 62 KPVIGIEAYMAPESRFNKKRVTWGDPGQKADDVSASGAYTHQTIWARTVDGLHNLMKCSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R Q + R+ L E ++GL+ TG SG + + A + ++++ Sbjct: 122 RASTEGQLGKWPRMDAELLAE-HSKGLMATTGCPSGEVQTRLRLGHEKEAIEAAGKWREI 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D +V L H +R +V +A ++P V TN+S + ED EAH+ L+ V Sbjct: 181 YGADNFFVELMDHGIELERRVRDGLVDIARKLDIPFVVTNDSHYTYAEDREAHEALLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + R + Y + + E + Sbjct: 241 TGKTLQDPSRFKFDGTGYYLKSPQEMYAIDSSDAWQEGCRNTLLVAEKVDTTDMFAFQNL 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + E + R + G+ R +G + + ++++FE+ VI +M F Sbjct: 301 MPRYPVPEGMTEADYFREQVWEGMRRRFPEGVD------EVHTKQVEFEIGVILQMGFPS 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI WAK+N I VGPGRGS AG++ AYA+ ITD+DPL L+FERFLNPDR+S Sbjct: 355 YFLVVADFINWAKENGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERFLNPDRVSP 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMPYSQVD 473 PD DIDF + RR +VIRYV +K+G ++VAQ+ITFG+++AKAA++D R Q Y+ D Sbjct: 415 PDIDIDFDERRRGDVIRYVTDKWGDDKVAQVITFGTIKAKAAIKDSARVLYGQPGYAVAD 474 Query: 474 RLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 R+ K +P + + A+ S R DP V +++ + LEGL R+ Sbjct: 475 RISKAMPPAVMGKDIPLSGIFDPQHKRYAEASEVRGLYDTDPQVKEIIDTGRGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL +P+++ + +TQF+ E GL+K DFLGL LT + Sbjct: 535 AGVHACAVIMSAEPLMDHIPVWKRPQDGSIITQFDYPTCETLGLLKMDFLGLSNLTTIDD 594 Query: 585 SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L +A VDL + D +TY LL+ TLG+FQL+ MR L M+PD EDI Sbjct: 595 ALKNMAINGKEPVDLDKLELTDKKTYQLLSKGDTLGVFQLDGGPMRDLLRLMRPDNFEDI 654 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697 A+ +LYRPGP+ ++ Y RKN ++I IHP + L++ T G+I+YQEQVM Sbjct: 655 SAVGALYRPGPMGANSHTNYALRKNKLQEITPIHPSLAEALEDILGTTYGLIVYQEQVMA 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ L+GY+L +AD+LRRAMGKK KE +DK+ F +G NG ++E+L FA Sbjct: 715 IAQKLAGYTLGQADLLRRAMGKKKKEILDKEFAGFEAGMLANGFPADAIKTLWEILVPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNK+H+AAY ++SY TA++K +YP EF+AA +T DN +K + + R+ I ++ Sbjct: 775 DYAFNKAHSAAYGLVSYWTAYLKANYPAEFMAALLTTNSDNKDKSAIYLAECRRMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN +F + + L AI+ VG I++A + F DF +VD+ Sbjct: 835 PPDVNESEREFVAVGEDVRFGLGAIRNVGANVVDAIIKARKEKGRFTDFSDFLRKVDATV 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N++V+ESL+ AGA D + R L +K ++F + Sbjct: 895 CNKKVVESLIKAGAFDSLNHPRKGLHMVHVEAVDAIMLTKKEEARGQFDLFGDGGDDGNG 954 Query: 937 KITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992 + + S + E+ +LG Y SGHPL+ + +L + G Sbjct: 955 SVFDVRIPEEHWESKHQLTLEREMLGLYVSGHPLNGVEQVLDSYSDASIARILEGDVADG 1014 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + L ++ S ++ + G + A E FFP Sbjct: 1015 TQVTLGGILASVTRRVNKNGEPWASAMLEDLAGGIEVLFFP 1055 >gi|311895500|dbj|BAJ27908.1| putative DNA polymerase III subunit alpha [Kitasatospora setae KM-6054] Length = 1175 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 329/1063 (30%), Positives = 533/1063 (50%), Gaps = 43/1063 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P + HL VH+ YS+L+GA L + ++ Q +A+TD N++ A EF ++A A Sbjct: 1 MSDQP-YAHLHVHTEYSMLDGAARLKQLFAEVGRLGQTHVAMTDHGNMYGAAEFHKQAVA 59 Query: 65 AGIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI P+IG + + + + + EG L + Sbjct: 60 AGITPVIGIEAYVAPESRSNTKRILWGQPHQKRDDVSASGAYTHKTIWARNKEGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L SR Y + R+ + E GL+ TG SG + A + + Sbjct: 120 LTSRSYAEGWLVKWPRMDKEIIAE-HAAGLMATTGCPSGEVQTRLRLGQFDEALRSAGEY 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG + ++ L H + +V++ +P V TN+S + +E D AHD+L+ Sbjct: 179 QEIFGRENYFLELMDHGLEIEGRVRDGLVEIGRRLNIPPVVTNDSHYTTEADAGAHDLLL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S DR R Y + + E + + Sbjct: 239 CVQTGKNLSDPDRFRFDGTGYYVKSAAEMYGLDSSDIWQEGCRNSQLLVAERVDTTGMFE 298 Query: 293 PRFIEKECDDIQ--KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + + E R K G++ R G +++R+ ++E++ I + Sbjct: 299 FKNLMPRFPIPEGFGSEAEFFRAKVWEGMDRRFPGGYD------EEHRELAEYEMDTIVQ 352 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP Sbjct: 353 MGFPAYFLVVADFIMWAKSQGIAVGPGRGSAAGSLVAYAMGITDLDPIPHGLIFERFLNP 412 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPD DIDF + RR +VIRYV K+G ++VA I+T+G+++AKAA++D R L PY+ Sbjct: 413 ERVSMPDVDIDFDERRRADVIRYVTEKWGSDKVAMIVTYGTIKAKAAIKDSSRVLGYPYA 472 Query: 471 QVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K +P D P+S + R DP V ++++ ++ +EGL Sbjct: 473 MGDRITKAMPPDVMGKGIPLSGITDSAHPRYGEAGEIRALYENDPDVKKVIDTARGIEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ PL+ +P++ + +TQF+ E GL+K DFLGL+ LT+ Sbjct: 533 IRQPGVHAAGVIMSAEPLTDHIPVWTRHTDGVTITQFDYPTCEGLGLLKMDFLGLRNLTI 592 Query: 582 LQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + ++ +GV+++L +P DD Y LL TLG+FQL+ MR L M+PD Sbjct: 593 MDDAVKAIERNKGVRIELLQLPLDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNF 652 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 EDI A+++LYRPGP+ ++ Y RKNG+++I IHP + L+ T G+I+YQEQ Sbjct: 653 EDISAVLALYRPGPMGVNSHTNYALRKNGQQEITPIHPELAEPLREVLEPTYGLIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V + AQ+L+GYSL +AD+LRRAMGKK KE ++ + F G + G S ++++L Sbjct: 713 VQKAAQILAGYSLGQADLLRRAMGKKKKEILEAEFVPFQRGCRERGYSDAAIQAVWDVLV 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNK+H A Y ++SY TA++K +YP E+++A +T D+ +K + + R+ I Sbjct: 773 PFSGYAFNKAHTAGYGLVSYWTAYLKANYPAEYMSALLTSVKDDKDKSAVYLNECRKMGI 832 Query: 815 QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872 Q++PP VN DF + + L AI+ VG ++ + S DF +V Sbjct: 833 QVLPPDVNESDADFTPHGSETVRFGLTAIRNVGGPVVESMIRTRKAKGKYTSFPDFLEKV 892 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930 +S N+R +ESL+ AGA D G++R L + + +++ ++F + Sbjct: 893 ESVVCNKRTVESLIKAGAFDSLGHTRKGLSAQFEPMIDNVVGIKRKEAEGQFDLFETVSD 952 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + +F + + V +E+ +LG Y S HPL + +L + Sbjct: 953 EPSFGLDVVFAE-DEWEKPVLLTHEREMLGLYVSSHPLHGIEHVLADKADCAVADLAERP 1011 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A + FFP Sbjct: 1012 DGVTVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1054 >gi|86149829|ref|ZP_01068058.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596922|ref|ZP_01100158.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562357|ref|YP_002344136.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194692|sp|Q9PPI9|DPO3A_CAMJE RecName: Full=DNA polymerase III subunit alpha gi|85839647|gb|EAQ56907.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190611|gb|EAQ94584.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360063|emb|CAL34855.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925974|gb|ADC28326.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni IA3902] gi|315930589|gb|EFV09621.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni 305] Length = 1200 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 378/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 286 -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + E+ + ++ GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|307331654|ref|ZP_07610761.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu 4113] gi|306882680|gb|EFN13759.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu 4113] Length = 1181 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 335/1070 (31%), Positives = 528/1070 (49%), Gaps = 51/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F Q+A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y+ + R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S DR R Y S D +A + + + Sbjct: 239 CVQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + D E + + G+ R G +D ++ ++E++VI +M Sbjct: 298 KRDLMPRFDVPEGYTEVTWFQEEVRKGMARRFPGGV------PEDRQKLAEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ +YA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPVEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYGH++VAQI T+G+++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRGEVIRYVTEKYGHDKVAQIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPVSLQAIADDS------RFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D P+S R +P V ++++ ++ +EGL Sbjct: 472 GDRITKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ ++ VP++ VTQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ + + + DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVRANKGIDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI A+ +LYRPGP+ + Y RKNG+++I IHP ++ LK T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITHGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+L+GYSL +AD+LRRAMGKK +E +DK+ F G S ++++L Sbjct: 712 QKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGMRDRDYSDQAIQAVWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I+ + S D+ +V+ Sbjct: 832 VLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F G Sbjct: 892 AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGMAGD 951 Query: 934 FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 D + + E+ +LG Y S HPL + +L + Sbjct: 952 GGDGEGPGFGLDVEFSDV-EWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAAISA 1010 Query: 986 SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 LTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|283953915|ref|ZP_06371444.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 414] gi|283794520|gb|EFC33260.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni 414] Length = 1200 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 382/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L+E +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEEY-SEGLICSSACLQGEVNWHLNTYNERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + ++ AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKDRAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ R R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPGRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R KE + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKEYNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FINESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIERHHKGFEVWEYAKALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIKYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G ++T A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKIDFADGAEKQGYNRTEAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA + F + DF ++D Sbjct: 833 SINKAIREFSALEQDGRDAIIYGLGAIKSVGIPAVENLLEARQNGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KVNRRTLESLIKAGAFDEFGFTRKALFDNMENLSEVSRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ + K + E E+ +LG Y SGHPLD + + + + Sbjct: 953 VQVNFIPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFENLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++ F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRLEILDYYSSFDTTVF 1050 >gi|288929494|ref|ZP_06423338.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288328999|gb|EFC67586.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 1249 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 366/1110 (32%), Positives = 571/1110 (51%), Gaps = 91/1110 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 FVHL VH+ YS+L+G S+ ++DK A+ +A+TD N+F EF Sbjct: 17 DFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFFNYCKKVNGKR 76 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +PIIGC++ + + + +++L GY+ L +LVSR Sbjct: 77 KEEGLPEFKPIIGCEMYVARHRKTDKVKENGDM--SGYHLIVLAKNYTGYKNLTKLVSRA 134 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L+ EGLI+ + +G + R N + A + + ++FG Sbjct: 135 W-VDGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYHRVFG 192 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++++A + +V TN++ F+ +E+ E Sbjct: 193 DDYYLELQRHEVKDPHIRANREAFPLQQRANKVMLEMAEEMGIKVVCTNDAHFVDQENAE 252 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R + + K R EM +F DLP+A+ NTVEI + Sbjct: 253 AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVETYSI 312 Query: 287 VHAPILPRFIEKECDDIQKE-----EENELRNKA------------VAGLEVRLAQGAIA 329 H+PI+P F E +++ E EL ++ G E G Sbjct: 313 DHSPIMPFFPIPEDFGTEEQWRQRISEKELYDEFTSDENGQNQLPPEEGEEKIKKLGGYE 372 Query: 330 KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 K Y ++ R+R++FEL+++ M F GYFLIV DFI Sbjct: 373 KLYRIKFEADYLAKLAYDGAKKLYGEPLTEEVRERVNFELHIMKTMGFPGYFLIVQDFIN 432 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF Sbjct: 433 TAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 492 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R V+ +V++KYGH++VA IIT+G++ K +++DVGR ++P V+ LCKLIP+ Sbjct: 493 DGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKLIPDKLP 552 Query: 485 HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI REA + D + + ++ LEG R HA G +I +S Sbjct: 553 DGLKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTIICRDAIS 612 Query: 541 QLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 VP+ D L TQ++ IE+ GLIK DFLGLKTL++L+++++ + G Sbjct: 613 DWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENVRLSTGK 672 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++L IP DD TY L T+G FQ ES+GM++ L +QP ED+IA+ +LYRPGP Sbjct: 673 TINLEEIPIDDPLTYKLYCEGRTIGTFQFESAGMQKYLRELQPTVFEDLIAMNALYRPGP 732 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK ++ P ++ LK+T G+ +YQEQVM +++ L+ ++ ++D LR Sbjct: 733 MDYIPEFIARKRDPSRVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 792 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK+ +MDK + F G KNG K + I+E KFA Y FNKSHA Y+ +++ Sbjct: 793 KAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATCYSWVAF 852 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTA+ K HYP E++AA M+ + N+ +I KF + R I+ + P VN + F V Sbjct: 853 QTAYFKAHYPAEYMAAVMSRNLANISEITKFMDECRVMGIKTLGPDVNESRLKFSVNKHG 912 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A+ I++ + P+ S+ D RV+ +N++ +ESL +G D Sbjct: 913 EIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLALSGGFD 972 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 G +R L + +DN+ +Y Q + + ++F + + Sbjct: 973 SLGIARENYLGTDSKGATFIDNLTRYGQLFQMEQQQMQNSLFGASNAVEVSTPPVPQAER 1032 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002 +S R E+ ++G Y S HPLD YK +L+ M G E +A ++ + LA MV Sbjct: 1033 WSSIERLNKERDLVGIYLSAHPLDDYKIVLQSMCNTGCNELEDRMALVQKAEVTLAGMVT 1092 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T+ G G+VT + + E FF Sbjct: 1093 NTRSAVTKTGKPCGFVTIEDYSGSGELAFF 1122 >gi|57237020|ref|YP_178822.1| DNA polymerase III subunit alpha [Campylobacter jejuni RM1221] gi|57165824|gb|AAW34603.1| DNA polymerase III, alpha subunit [Campylobacter jejuni RM1221] gi|315058181|gb|ADT72510.1| DNA polymerase III alpha subunit [Campylobacter jejuni subsp. jejuni S3] Length = 1200 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 380/1055 (36%), Positives = 587/1055 (55%), Gaps = 41/1055 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNV 347 R K+ + I EE E + L + + ++Y+QRL+ E+N+ Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLKFIDESKHEEYKQRLEVEINI 356 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLFERF Sbjct: 357 IKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLFERF 416 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R M Sbjct: 417 LNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARVCDM 476 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 D L KL+P + + + + +E P + E ++ LEGL R+A Sbjct: 477 SIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRNAGM 535 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ + Sbjct: 536 HAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVINNA 595 Query: 586 LDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ EDII Sbjct: 596 IKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFEDII 655 Query: 645 ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 A+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Q++ Sbjct: 656 AVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQII 715 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA YGFN Sbjct: 716 GGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGYGFN 775 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PPS+N Sbjct: 776 KSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSIN 835 Query: 823 TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 +F G + I Y L AIK VG +++EA D F + DF ++D K+N Sbjct: 836 KAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKIN 895 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T ++ Sbjct: 896 RRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQV 955 Query: 939 TL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 K + E+ +LG Y SGHPLD + + + E I Sbjct: 956 NFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILS 1015 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + ++ R G + + ++A F Sbjct: 1016 IGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 1162 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 498/1045 (47%), Positives = 679/1045 (64%), Gaps = 28/1045 (2%) Query: 2 TQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 Q + +P+ FVHL+V S+YSLLEGA+ + A PA+ + D NLF ALEF Sbjct: 10 VQAISDTPAQTGFVHLRVRSAYSLLEGAIKAGKVGKLAADAGMPAVGVADRVNLFGALEF 69 Query: 59 SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 S+ A + G+QP+I C L + + K P +VL+ G++ L L S Sbjct: 70 SEAAKSVGVQPLIACALPVTGIGGKRTERWAKVPT-----VVLICQDEPGWRNLCALSSS 124 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 YL D G + + + + GLI+L+GG GP+D F N + L F Sbjct: 125 AYL-DAGDEEPNVTWDQVVA-HSAGLILLSGGPDGPVDPLFVQNKPAEGARALAAMAGAF 182 Query: 179 GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 GDR YV LQRH D + +V+ AY H++PLVATN+ + + +HD L+ +A Sbjct: 183 GDRFYVELQRHGRPDEAAAERGLVEWAYGHDVPLVATNDVHYARQNQARSHDALLCIADG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 Q+DR R+T H+ + +EM ++F+DLPEA ++T+EIARRC+F+++ H PILPRF Sbjct: 243 AFTGQEDRRRITDQHFFRTAAEMRTLFADLPEACDSTIEIARRCAFLVKTHPPILPRFDT 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + E +EL ++A GL+ RL + DY RL++E+ +I +M F GYF Sbjct: 303 GDG----RTEPDELMHQAREGLKARLK--LVTPSAPEADYWTRLEWEVGIITQMGFPGYF 356 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV+DFI+WAK + IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPD Sbjct: 357 LIVSDFIKWAKSHGIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPD 416 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+RR+EVI YVQ +YG +RVAQIITFG+LQA+A LRDVGR LQMP QVDRL K Sbjct: 417 FDIDFCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLAK 476 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 +IPN+PA+P + QAI + R REAR AD +V LLE + +LEGLYR+ASTHAAGIVIGD Sbjct: 477 MIPNNPANPTTLAQAIEIEPRLREARDADRAVATLLETALELEGLYRNASTHAAGIVIGD 536 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL +L P+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++ +L++RG Sbjct: 537 RPLVELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAAQ 596 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D +L+P DD +TY L+ + T+G+FQLES GMR L M+ IE+I AL+SLYRPGP++ Sbjct: 597 DFNLLPLDDGKTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPME 656 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 I Y +RK G+ ++ +HP + +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRA Sbjct: 657 MIDTYIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRA 716 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK KEEMD QK RFI GAS+ + + + +IFEL+AKFA YGFNKSHAAAYA+ISYQT Sbjct: 717 MGKKKKEEMDFQKARFIKGASEKSVPEQQSDSIFELVAKFAGYGFNKSHAAAYALISYQT 776 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GD 832 W+K ++PVEF AASM+L++ N +K+ F QDAR+F + + P VNT DF V G Sbjct: 777 GWLKANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGVPVRAPDVNTSSADFDVTWEEGT 836 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + Y+L AI+ VG +H++E F + DF RVD + +N+R LE L AGA Sbjct: 837 GAVLYALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGAF 896 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R QL + D + Y Q V +RT+ ++F ++ S + L+ R Sbjct: 897 DSIHPNRRQLFEQADTLMAYCQSVAADRTSSQVSLFGADQAGAS-RPRLKSVEPWVGPER 955 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT 1009 + E +GFY SGHPL+ + LR+ + E+V + +A +V +Q++ + Sbjct: 956 LDQELSAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERAS 1015 Query: 1010 -RKGSRIGWVTFSEPAKEYEANFFP 1033 + G + +VTFS+P E+E FP Sbjct: 1016 AKNGEKFAFVTFSDPTGEFEC-LFP 1039 >gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 1177 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 406/1045 (38%), Positives = 608/1045 (58%), Gaps = 38/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP F HL++HS YS+++G + +++++D AAD QP++AITD NLF ++F + A Sbjct: 28 MT-SPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARK 86 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC + I D+ ++LL A GY +L EL+S+ +L + Sbjct: 87 KGIKPIIGCDVWITNDDDRDKP----------SRLLLLAKNAAGYLQLCELISQAWLSNL 136 Query: 125 GKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + I WL+++ GLI L G G + A + AE+ + ++F Y Sbjct: 137 HRGRAEIRTEWLEKLSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFY 196 Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +QR ++ + Q+V LA +LP+VAT+ FL++E++ AH+ ++ +++ Sbjct: 197 IEIQRAGQPNQEAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLAN 256 Query: 243 KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R R ++EM +F+DLP AL+N+ EIA+RC+ LQ+ P LP F E Sbjct: 257 SRRVRRFNDRQCFTTQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGM 316 Query: 302 DIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 I + L +A +GLE +L + Q Y RLDFE N I +M F GYFL Sbjct: 317 TIG----DFLVAEARSGLERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFL 372 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFIQWAK N +PVGPGRGSGAGS+ AY+L+ITD+DPL ++LLFERFLNP+R+SMPDF Sbjct: 373 IVADFIQWAKNNGVPVGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDF 432 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L M Y+ D + KL Sbjct: 433 DIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKL 492 Query: 479 IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IP P V++ AI ++ E + + V +LL+++Q++EG+ R+ HA G+VI Sbjct: 493 IPFKPGKQVTIADAILEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPG 552 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L ++ ++ + Sbjct: 553 KLTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMA 612 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 L +P +D +Y LLT T+ +FQLES GM+ L+ +PD EDIIALV+LYRPGP Sbjct: 613 DFSLEKLPLNDKASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 672 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+G E+ P + +L ET G+++YQEQVMQ+AQ++ GYSL AD+LR Sbjct: 673 MDLIPDFCRRKHG-ERFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLR 731 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM + ++ F GA+K+G+S+ A IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 732 RAMGKKKAEEMAEHRQIFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAY 791 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKVGD- 832 TA++K H+P F+AA+++L MD+ EKI+ +D + ++PP +N F Sbjct: 792 HTAYLKAHHPAAFMAANLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGE 851 Query: 833 -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +I Y L A+KG G I+ A A PF L DF RVD +++NRR ++SL+ Sbjct: 852 PGKRAKQIRYGLGAVKGSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIR 911 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA DCF R LL S+ + A+ + ++F + + K + Sbjct: 912 AGAFDCFEVDRAVLLASVALALEAAEQH--EASINQVSLFGGDDSDLDTQPEYLKVAPWT 969 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R E+ LGFY SGH + Y +R+ + +A ++VS + + Sbjct: 970 DKQRLTEEKTALGFYLSGHLFNSYAEEVRRFARTKLSSLEPSRDPR--MIAGIIVSLRVQ 1027 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + VT + + + + Sbjct: 1028 MTQRGK-MVIVTLDDSSATVDVTVY 1051 >gi|317124660|ref|YP_004098772.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043] gi|315588748|gb|ADU48045.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM 43043] Length = 1197 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 352/1087 (32%), Positives = 544/1087 (50%), Gaps = 68/1087 (6%) Query: 5 LEKSPS------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58 + P+ FVHL VH+ YS+L+GA + ++ + A PA+A TD +F A EF Sbjct: 1 MSTDPAPRPDQNFVHLHVHTEYSMLDGAARIGDLFTEAARMGMPALATTDHGYVFGAYEF 60 Query: 59 SQKACAAGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGY 109 +KA G++PIIG + I + + + +L +G Sbjct: 61 WKKAKGTGVKPIIGVEAYITPGTHRADRTKVSWGDGGRDDVSGSGAYTHMTMLAENNDGM 120 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L + S L + RI L G +GLI+ TG S I F A + Sbjct: 121 HNLFRMSSIASLDQVYTKWPRIDRELLSSYG-KGLIVTTGCPSSEIQTKLRFGMYDAARE 179 Query: 170 RLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + +FG D ++V L H +R + ++++LA +LPL+ATN+ + ED +A Sbjct: 180 VAGELRDIFGRDNVFVELMDHGLDIERRTQRELIRLARDLDLPLLATNDLHYTRAEDAKA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQ 286 H L+ V + + +R + + + ++ + + +LPEA +NT+ +A RC Sbjct: 240 HAALLCVQSGSTLMDPNRFKFDAEDFYLKSAQEMRHLWRELPEACDNTLLVAERCEVSFT 299 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 RF+ + ++E + + GL+ R +G R++ FE + Sbjct: 300 EGE---GRFMPRFPVPEGEDETSWFIKEVETGLQRRFPEGVPDYA------RKQAAFEED 350 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI +SGYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FER Sbjct: 351 VIVSKGYSGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFER 410 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+RMSMPDFD+DF + RR EVI+YV KYG ERVAQI+T+G+++AK A++D R + Sbjct: 411 FLNPERMSMPDFDVDFDERRRGEVIKYVTEKYGSERVAQIVTYGTIKAKQAVKDAARVMG 470 Query: 467 MPYSQVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQK 517 P+S ++L K +P D V + + S FR + + +++ ++ Sbjct: 471 HPFSVGEQLTKAMPPDVMGKGVPLAEIYNPEHKRYNEGSEFRALVQTERHFEEVVDAAKG 530 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R HAAG+++ PL ++P+ + ++ +TQF+ E GL+K DFLGL+ Sbjct: 531 LEGLKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQVITQFDYPSCEALGLVKMDFLGLR 590 Query: 578 TLTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 LT+L +++ + D TY LL TLG+FQL+ GMR L Sbjct: 591 NLTILDDAIENIKANRDLDIDLDALSKDMTDRATYDLLGRGDTLGVFQLDGGGMRALLRL 650 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--------------IVSIHPLIDP 680 MQPD EDI A ++LYRPGP+ N K + ++P Sbjct: 651 MQPDNFEDISAALALYRPGPMGVNAHTNFALRKNGKQALTPLDPKLEGKLQPEMVAALEP 710 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +L T G++IYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +D + F G + G Sbjct: 711 ILGTTYGLVIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVPFSDGMKQKG 770 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 ++ ++E+L F+DY FNK+H AAY ++SY T ++K +YP E++AA +T D+ + Sbjct: 771 FNEASVKALWEVLVPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKD 830 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859 K + + R I+++PP VN +F I + +AAI+ VG +++A + Sbjct: 831 KSALYLNECRHMGIKVLPPDVNESVANFAAVGTDIRFGMAAIRNVGVPVVEAVIKAREEK 890 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919 F S +DF S+V + N+R +ESL+ AGA D G SR +++ + V+K Sbjct: 891 GAFASFKDFLSKVPAVVCNKRTIESLIKAGAFDSLGESRRGMVEVHERYVDALVEVKKQE 950 Query: 920 TNKHENIFA--------HEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLD 969 +++F G L + + E+ +LG Y S HPL Sbjct: 951 AIGQDSLFGAFDMGDQSGSTGGAGAFDGLPGVPSLEWDKATLLSFEREMLGLYVSDHPLF 1010 Query: 970 VYKPILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 + IL+ G + +A ++ S Q K+T+KG T + Sbjct: 1011 GIEHILQSHADTSIASLTGDDPKPDGTPVTVAGLITSLQLKRTKKGDLWAIATVEDLDGA 1070 Query: 1027 YEANFFP 1033 E FFP Sbjct: 1071 IECLFFP 1077 >gi|205355560|ref|ZP_03222331.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205346794|gb|EDZ33426.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 1200 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R K+ + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ K + E+ +LG Y SGHPLD + + + + + Sbjct: 953 VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|50955139|ref|YP_062427.1| DNA polymerase III subunit alpha [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951621|gb|AAT89322.1| DNA polymerase III, alpha subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1171 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 377/1062 (35%), Positives = 570/1062 (53%), Gaps = 51/1062 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL VHS YS+L+GA + ++D PA+A+TD N+F A +F + A AGI Sbjct: 2 ADSFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIELVSR 118 +PIIG + + + + + + + LL +T EG L + S Sbjct: 62 KPIIGTEAYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRMSSL 121 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + + R+ L + +G+I TG SG + + A+K F+ +F Sbjct: 122 ASI-EGYYFKPRMDRELLSQY-AKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF 179 Query: 179 G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + Y + H G +R S +++LA LPLVATN+ + D ++H L+ V Sbjct: 180 GKENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS 239 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R + + YLK +M +F D P+A +NT+ IA R A +PRF Sbjct: 240 GSTLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRF 299 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + E+ + GL R + G + R++ D+E+ VI++M F G Sbjct: 300 PVPAGE----TEQTWFVKEVERGLAERYSNGV------TPEVRKQADYEIGVISQMGFPG 349 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+FERFLNPDR+SM Sbjct: 350 YFLVVADFINWSKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSM 409 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DF RR EVI+YV +KYG ERVAQI+T+G+++AK AL+D R L P+ ++L Sbjct: 410 PDFDVDFDDRRRGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKL 469 Query: 476 CKLI-PNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K + P + + R +DP + + + LE L R Sbjct: 470 TKAMPPPVMGKDIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWG 529 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ PL ++P+ + + VTQF+ E GLIK DFLGL+ LT++ +L Sbjct: 530 VHAAGVIMSSDPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDAL 589 Query: 587 DF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 D A RG K+ L + DD Y LL+ TLG+FQL+ MR L M+PD EDI A Sbjct: 590 DNIEANRGEKLVLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISA 649 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 L++LYRPGP+ ++ Y RKNG+++I IHP + +L + G+IIYQEQVM IA Sbjct: 650 LIALYRPGPMGANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIA 709 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++G+SL +AD+LRRAMGKK K E+DKQ E F G +NG S ++E+L F+DY Sbjct: 710 QKVAGFSLGQADILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDY 769 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNK+H+AAY VISY TA++K HYP E++AA +T D+ +K+ + + R+ I+++PP Sbjct: 770 AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPP 829 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878 VN + F I + + A++ VG + EA F+S DF SRV N Sbjct: 830 DVNESSLYFAAVGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAAN 889 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----HENIFAHEKGT 933 +R +ESL+ AGA D GY+R L++ ++ + A ++++ N ++++ ++ Sbjct: 890 KRTVESLIKAGAFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPN 949 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--- 990 S + + + E+ +LG Y S HPL + L K+ + VA+ Sbjct: 950 RSQH-HIPERPEWVKRDKLAFEREMLGLYVSDHPLAGLELHLAKLASTSIADLVASETVQ 1008 Query: 991 RGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANF 1031 G + +A +V S Q + + G++ G + + E A F Sbjct: 1009 DGETVVIAGLVTSVQHRVAKASGNQYGMIQVEDFGGEMTAMF 1050 >gi|239940546|ref|ZP_04692483.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] gi|239987031|ref|ZP_04707695.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 11379] gi|291443979|ref|ZP_06583369.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] gi|291346926|gb|EFE73830.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL 15998] Length = 1178 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 328/1066 (30%), Positives = 528/1066 (49%), Gaps = 46/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A + PIIG + + + + + S G L Sbjct: 60 ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A + + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178 Query: 175 KKLFGDR-LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCRNTLLVAQQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + + E + + G+ R G D ++++++E+++I +M Sbjct: 298 AKNLMPKFEIPEGFTEITWFQEEVRRGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKSNKGIDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S ++++L Sbjct: 712 QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMRIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I+ + + S DF +V+ Sbjct: 832 VLPPNVNESLSNFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYSSFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F + Sbjct: 892 AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951 Query: 934 FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987 + + E+ +LG Y S HPL + +L + Sbjct: 952 SGEPGFGLDVEFSDVEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADASISQLTGG 1011 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 DYSDGSVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis ATCC 43325] gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis ATCC 43325] Length = 1143 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 402/1031 (38%), Positives = 581/1031 (56%), Gaps = 38/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + ++ + A+ +TD N + F +A ++GI+PIIG + + Sbjct: 1 MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGADVLV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + LL GYQ + L+S+ Y + I WL E Sbjct: 57 ------KSALCGDERFELTLLAKNNTGYQNITLLLSKAY-ERGYQDLPYIDQEWLIE-HR 108 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200 EGLI+L+GG +G + + + E + +++ F + Y++L R ++ R + Sbjct: 109 EGLIILSGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRTGRHEEERYVSLA 168 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 ++ A LP+VATN+ LFL EED+EAH++ +A+ S + RP+ T Y ++ E Sbjct: 169 IKYAEQKGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFRSEQE 228 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +FSD+P ALENT+ IA+RC+ +++ + E L K+ GL Sbjct: 229 MCELFSDVPSALENTLLIAQRCNVTIRLGEYF-----LPKFPTGDLSTEAFLVKKSKEGL 283 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + +Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVGP Sbjct: 284 EERLQVLFPDEKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 344 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP DP + +A A + Sbjct: 404 TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFAAEP 462 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + + +D V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 463 QLQVVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVT 522 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 F+ +E AGL+KFDFLGL+TLT+++ +LD + R VD+S IP DD E++ L Sbjct: 523 HFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDISTIPLDDPESFEL 582 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--- 668 L T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP+++ +V N Sbjct: 583 LKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGNE 642 Query: 669 ----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EE Sbjct: 643 PVAYPDPEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M Q+E F GA + G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP Sbjct: 703 MAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 762 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843 EF+AA MT EMDN +KI + + +++ PP +NT F V +N I Y + AIK Sbjct: 763 AEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNENSEIVYGIGAIK 822 Query: 844 GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG ++ A F L D C+RVD KK+NRR ESL+ +GA D G R L Sbjct: 823 GVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHRAALS 882 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 ++L++ K + K+ ++F D + + V + E+ LG Sbjct: 883 KNLEDALKASDQHAKDEALGQTDMFGVLTERHEDVEKAYASTPRWSEKVILDGERETLGL 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HP+ Y L ++ RG ++ +VV+ + T+KG+R+G T Sbjct: 943 YLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVAITKKGNRLGIATLD 1002 Query: 1022 EPAKEYEANFF 1032 + + + F Sbjct: 1003 DRSGRLDITLF 1013 >gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2080] gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium HTCC2080] Length = 1153 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 403/1040 (38%), Positives = 586/1040 (56%), Gaps = 38/1040 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +SL++G + + ++ ++AA PA+A+TD N + ++ + A AG++ I Sbjct: 4 FVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKLI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L ++ D+ I LL +GYQ L L+S+ + Q S R Sbjct: 64 VGVDLWVEDADDRDRPKP----------ISLLAMNEQGYQNLTLLISKAWREGQYHGSPR 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL + EG++ L+ G G + + A L + F +R Y+ + R Sbjct: 114 IERDWL-DAHAEGVLALSAGCQGEFGQLLNNGHVEEARASLKRWMATFPERFYIEVHRTG 172 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 + V+LA E P+VATN+ FL+ ++EAH+ + + + + RPR Sbjct: 173 RIGEEDFLHAAVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRPREY 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL+ EM +FSDLPE+L NTVEIARRCS + + P LP F + I E Sbjct: 233 SEQQYLRTPEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTI----E 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L + GL RL Q + +Y+QRLDFEL VI M F GYFL+V DFI+W K Sbjct: 289 DFLSQLSHDGLSRRLEQLQLTDPDTLSEYKQRLDFELGVINEMGFPGYFLVVMDFIRWGK 348 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + IPVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRD Sbjct: 349 QQGIPVGPGRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMDRRD 408 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV + YG E V+QIITFG++ AKA +RDV R PY D++ KLIP + + Sbjct: 409 EVIEYVADTYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVGITLE 468 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + + D S + +++ +LEG+ R+ HA G+VI L+ P+Y D Sbjct: 469 -KAVEQEEALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSPLYCD 527 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPF 603 VTQ++ +E+AGL+KFDFLGL+TLT++ ++ + + + K+D+S IP Sbjct: 528 EAGGGLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDISEIPL 587 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD + LL + T +FQLES GM+ ++ +QPD EDIIALV+L+RPGP+ + +V N Sbjct: 588 DDSRVFTLLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNF 647 Query: 664 RKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+LRRA Sbjct: 648 INRKHGREALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRA 707 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EEM KQ+ F GASK GI +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT Sbjct: 708 MGKKKPEEMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 767 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835 AW+KTH+P EF+AA M+ E+DN +K+ + + + + P VN F V N I Sbjct: 768 AWLKTHFPAEFMAAVMSSELDNTDKLLTLRDECKSMGVPLRLPGVNEGAYLFTVNAANEI 827 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L AIKG+G +++ A AD F L D CSR D +K+NRR LE+L+ +GALD F Sbjct: 828 VYGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGALDGF 887 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK--FSVENSSVRF 952 G R L +LD+ + A+ N ++F T E Sbjct: 888 GVERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTLKEIL 947 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E+ +G + SGHP+ Y+ +RK + + +N +A ++V + KT++G Sbjct: 948 NGEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQP---DSNTTVAGLIVDIRTIKTQRG 1004 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 + + + + E+ + Sbjct: 1005 -VMAVLKLDDNTGQIESTVY 1023 >gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134] Length = 1463 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 356/1085 (32%), Positives = 555/1085 (51%), Gaps = 77/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F HL HS +S+L+ S+ +I+ AA + PA+A+TD N+ A F++ Sbjct: 262 FAHLHNHSQFSILQSTASVQDIVKAAAAQKMPAVAMTDMGNMMGAFHFTKAVKSHNAGVK 321 Query: 62 -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A AG ++ IIGC+ ++ + ++ K+ IV+L GY Sbjct: 322 KANAAAVEAGEDPEGVPLKAIIGCEFNVCVD------HKNKSQKDNGYQIVILAKNKNGY 375 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 Q L ++ S Y D RI + + + + LI+LTG G + AE+ Sbjct: 376 QNLCKMASIAYT-DGFYYVPRIDRNVIMQY-RDDLIVLTGNLYGEVPSKILNVGENQAEE 433 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FGD LY+ L RH D R ++ L+ H + VA+NN+ ++ + D +AH Sbjct: 434 ALIWWKEQFGDDLYIELMRHGQEDEDRVMPVLIALSRKHNIKTVASNNTFYIDKSDADAH 493 Query: 229 DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 DVL+ V V+ ++Y K+ EM +F+D+PEA+ N E+ + Sbjct: 494 DVLLCVKDGEKVATPKGRGRGYRYGLPNDEYYFKSGEEMKILFADVPEAILNVQEVVDKI 553 Query: 282 SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 +LP F + D ++ E LR+ G + R + Sbjct: 554 EPYELARDVLLPAFDIPQEFVSPEDAIDGGKRGENAFLRHLVYEGAKKRYGE------EL 607 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RLDFEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT Sbjct: 608 SEEVTERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 668 NIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500 AK+++RD RAL + DR+ KLIP + + Sbjct: 728 AKSSIRDTSRALDLSLGDADRIAKLIPTMSKLRKIFGKTDAELRSSFRSDDLPKVQELIN 787 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 D ++L +++LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 788 IETQDNLEGQMLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLYVTQFDN 847 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E+AGL+K DFLGLKTLTL++ ++ + R D P DD +TY L T+G Sbjct: 848 SVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHNVDLDPENFPLDDEKTYELFQRGDTVG 907 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I P ++ Sbjct: 908 IFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAME 967 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI AS Sbjct: 968 EYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAK 1027 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G I++ FA Y FNKSH+ YA I+YQTA++K HYP E+LAA ++ M+++ Sbjct: 1028 GHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDI 1087 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858 +++ F ++A++ ++++ P VN F V DN + + + A+KGVGT I+E Sbjct: 1088 KQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRK 1147 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLLQS-------LDNIQ 909 D + S+ DF RVD + N++ ESL AG D R Q L+ Sbjct: 1148 DGKYKSVFDFARRVDLRAANKKAFESLALAGGFDELDGDTHRAQFFNDNGDGITFLEKAV 1207 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 KY ++N + ++F + + + + + E+ V+G Y SGHPLD Sbjct: 1208 KYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLD 1267 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K + + ++ Q + ++ G T + + Sbjct: 1268 DFKTEMETFCNATVAHFNQMEAFVNRELTFGGVITDVQHRVSKNGKGWAAFTVEDFTDSF 1327 Query: 1028 EANFF 1032 E F Sbjct: 1328 EFRMF 1332 >gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121] Length = 1136 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 395/1019 (38%), Positives = 583/1019 (57%), Gaps = 31/1019 (3%) Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91 +L A PA+A+TD NNL + F + A +GI+PI G + I+ L+ + Sbjct: 4 LLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELEENH---- 59 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 + LL T +GY+ +IE++S+ Y L Q + + +W+ E E +I+++G Sbjct: 60 ------RLTLLAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWV-EAHQEDVILISGAQ 112 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELP 210 G + + +A+++L + ++F +R YV LQR R + VV LA P Sbjct: 113 YGDVGQYLALQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHAVVPLATELACP 172 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPE 269 +VATN+ FL ED+E+H+ + + + R R + + YLK+ EM ++F D+PE Sbjct: 173 VVATNDVRFLKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFDDIPE 232 Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329 ALENTVEIA+RC+ + + LP F E + + + + Sbjct: 233 ALENTVEIAKRCNVDVLLGKYFLPDFPVPEGMTMDVFFSELSFKGLEERFDFLVKKYGDR 292 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 Q+Y RLDFELN+I +M F GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYA Sbjct: 293 IADKKQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYA 352 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI YV YG + V+QIITF Sbjct: 353 LKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYGRDAVSQIITF 412 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509 G++ AKA +RDV R PYS D+L KLIP + + +A+ ++ +E D Sbjct: 413 GAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMTL-NKALEEEPMLKEFIENDEEAG 471 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++E++ LEG+ R+ HA G+VI L+ P+Y + VTQ++ +E+AGL+ Sbjct: 472 DVMEMALSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYDKNDVEEAGLV 531 Query: 570 KFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 KFDFLGLKTLT++ ++ + + +D++LI +D TY +L T +FQLE Sbjct: 532 KFDFLGLKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQRAETTAVFQLE 591 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPL 677 S GM++ ++ + P EDI+ALV+LYRPGP+ + +V + H Sbjct: 592 SRGMKELIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELAFPHPDYQHDD 651 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 + P+L+ T G+I+YQEQVMQIAQ+L+ +SL AD+LRRAMGKK E M +Q+ F+ GA Sbjct: 652 LIPVLEPTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMAEQRLLFMEGAG 711 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 K IS+ ++ NIF+L+ KFA YGFNKSH+AAYA++SYQTAW+K HYP F+AA ++ +M Sbjct: 712 KYDISEELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAPFMAAVLSADMQ 771 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856 N +KI F ++ R +Q+ P+VN F V I Y L AIKGVG I +A Sbjct: 772 NTDKIVIFIEECRAMKLQLELPNVNESVYKFTVNRAGAIVYGLGAIKGVGEGPIEAITQA 831 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + PF+ + DFC R+ KK+N+RV+E+L+ +GALD G +R L S+D K A + Sbjct: 832 REEGPFEHIFDFCKRIG-KKVNKRVMEALIRSGALDQIGPNRATLFASIDEALKRADRIA 890 Query: 917 KNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 K+ ++F E+ T + S R + E+ LG Y +GHP+D Y+ Sbjct: 891 KDEDAGMMDLFGVAVEESTEGAYDEIGIQHEWPSRQRLDGEKDTLGLYVTGHPIDDYEKE 950 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ + + I +A ++V + K++KG I +VT + + E FP Sbjct: 951 IRRFARSRIVDLQPKRGDSQI-MAGLIVEMRITKSKKGGNIAFVTLDDRSARIEVTVFP 1008 >gi|153951559|ref|YP_001398338.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. doylei 269.97] gi|152939005|gb|ABS43746.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 1200 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 377/1058 (35%), Positives = 584/1058 (55%), Gaps = 47/1058 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F A++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKKQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLEDY-NEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296 ++ DR R + + Y+K+ +M +F D+PEA+ENT E+A++C+ L + P +F Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFVDIPEAIENTQEVAQKCNLELNLGNPTPPNFKFT 296 Query: 297 EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A ++++L+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWDLIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E + V+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENKVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIAPVENLLEARQDGEFKDINDFLGKIDPA 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LE+L+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLENLIKAGAFDEFGFTRKALFDNIENLTEASRKIAEVRKNAASSLFGEEELTSG 952 Query: 936 DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 ++ + K + E+ +LG Y SGHPLD + + + + Sbjct: 953 VQVNFIPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFEGLKNNGE 1012 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I + + ++ R G + + ++A F Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050 >gi|227484665|ref|ZP_03914981.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227237385|gb|EEI87400.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 1148 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 351/1063 (33%), Positives = 573/1063 (53%), Gaps = 62/1063 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL +H+ YSLL+G ++ +LD+ ++AITD ++ +EF ++A Sbjct: 1 MTTK--FTHLHLHTEYSLLDGFTRIDELLDRCKELGMDSVAITDHGQMYGVIEFYKQAQK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIGC++ + +D+ + ++LL GY+ L+++VS Y ++ Sbjct: 59 RGIKPIIGCEVYVSERDHKIKDPTNR----RYYHLILLAENNTGYKNLVKIVSEAY-VNG 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R+ ++ + TEGLI L+ +G +++ AE+ L ++K FG + Sbjct: 114 FYYKPRVSFDFI-KNHTEGLIALSACLNGEVNQRILEGDMGGAEETALKYEKAFGKGSFF 172 Query: 184 VNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +Q H ++ + +Q ++ L + +VATN+ ++++ED DVL+ + ++ Sbjct: 173 LEVQDHGMAEQKKVNQGIKYLHKKLGIEMVATNDVHYINKEDSYYQDVLLCIQTGALIKD 232 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++R R+ T + YLK+ M +IF D A+ENT +IA RC ++ H P LP + + Sbjct: 233 ENRMRMPTREFYLKDADTMATIFKDYERAIENTRKIADRCQVEIKFHQPHLPYYTK---V 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L+ GL + Q + +R E++VI M + YFLIV Sbjct: 290 PEGLTNLDYLKLLVNDGLAQKYDQ-------VTDEIVKRAKMEIDVINSMGYVDYFLIVW 342 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +A+KN+I VGPGRGS AGS+ +YAL IT IDPL+++L+FERFLNP+R+SMPD DID Sbjct: 343 DFVNYARKNDIAVGPGRGSAAGSLVSYALDITQIDPLKYNLIFERFLNPERVSMPDIDID 402 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y +VD + K IP Sbjct: 403 FDYVLRDKVVEYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDIAYGKVDTIAKQIPA 462 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + +A+ + FR + D RL++ ++KLE L RH S HAAG+VI PL+ Sbjct: 463 TIGMTID-KALVESDAFRASYEKDAEGKRLIDTAKKLEALPRHTSIHAAGVVISKDPLTD 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600 ++P+ +D V+QF+M IE+ GL+K DFLGL+ LT+++ ++ + + D+ Sbjct: 522 IIPLALS--NDQVVSQFDMTEIEELGLLKMDFLGLRNLTVIKDTIKDIKKNYGVDLDIRK 579 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D T+G+FQ ES+GMR L+ ++P +D+IA SL+RPGP+D I Sbjct: 580 IDVNDVNVIKQFNQAKTIGLFQFESAGMRAFLKNLKPTVFDDLIAANSLFRPGPMDEIPK 639 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y + KN + + + + P+L T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK Sbjct: 640 YIHNKNNPDDVTFLDEKLKPILGVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKK 699 Query: 721 IKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 M++ ++ F I GA +NG+ + +A I++ + FA Y FNKSH+AA Sbjct: 700 KMAVMEENRDVFINGKVGEDGKVIIPGAVRNGVDRQVANTIYDEMISFAKYAFNKSHSAA 759 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++ QTA++K +YP E++A ++ MD K+ + + ++ I+++ P +N F Sbjct: 760 YSLVAVQTAYLKHYYPEEYMANLISSVMDQSGKLYSYVSETKRLGIEVLAPDINKSYGSF 819 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLES 884 KV D +I + L+ IK VG I++A F + ++F RV D + LN++ +ES Sbjct: 820 KVADKKIIFGLSGIKNVGLNLIDSIVKARDEGGAFTNFKNFLERVEDYDPRALNKKGIES 879 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA D GY+R L+ + K N+ I + Sbjct: 880 LIKAGAFDSLGYTRSSLMAIFEKAINTVHDNNKINVTGQINLLDMASAKEDTDIDMPNID 939 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDV--------------YKPILRKMGIKGYEESVATI 990 V+ + E+ VLGFY S HPL Y+ L + + Sbjct: 940 EYPKKVKLKLEKEVLGFYISEHPLSERSLALSNIVNFTTNYREELGENRLASL------- 992 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + +A ++ +K++ T+K + + + + E FP Sbjct: 993 DGKFVTMAGIINNKKELTTKKRDLMAFASLEDMYGNIEMVIFP 1035 >gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1] Length = 1155 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 493/1046 (47%), Positives = 660/1046 (63%), Gaps = 59/1046 (5%) Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 + + +A PA+A+TDTNN+F ALEFS+ A AG+QPIIGCQ+D++ + + Sbjct: 2 KVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYE----VIA 57 Query: 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147 G+ P IVLL GY+ L++L S +YL G S + LS L E EGLI L Sbjct: 58 PGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGDGT-SPHVTLSELAE-HAEGLICL 114 Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201 +GG GP+ R AE L T ++ DRLYV LQRH G ++ E V Sbjct: 115 SGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHV 174 Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEM 260 +LAY LPLVATN+ F E YEAHD ++ VA V Q + R R+TP HY K+ EM Sbjct: 175 ELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEM 234 Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320 ++F+DLPEALENT+EIA+RC+F + + +E ELR A GL+ Sbjct: 235 AALFADLPEALENTIEIAQRCAFRAE--------MHDPILPKFADDEVAELRRMANEGLK 286 Query: 321 VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 RL I +DY+ RLDFEL +I M F GYFLIVADFIQW+K IPVGPGRGS Sbjct: 287 ERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGS 344 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG Sbjct: 345 GAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGR 404 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFR 499 +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K+IP + PVS+ I D+ RF Sbjct: 405 DRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFI 464 Query: 500 EARLADPSV---------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 E RL++ ++K+EGL R+ASTHAAG+VIGDRPL +LVP+YRD R Sbjct: 465 EEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPR 524 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------------- 597 SD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D + G ++ Sbjct: 525 SDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPE 584 Query: 598 -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++LIP DD +Y L + T+ +FQ+ESSGM AL M+PDCIEDIIALV+LYRP Sbjct: 585 GTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRP 644 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP++NI + KNG + +HP +D +L ETQG+I+YQEQVMQIAQ ++GYSL AD+ Sbjct: 645 GPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADM 704 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKKI+E MD ++ +F++GA +NG+ + A+ + LL KFA+YGFNKSHAAAYAV+ Sbjct: 705 LRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVV 764 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTAW+K ++PVEF+AA M ++ +K+ + Q+ + I+ + P VN F V D Sbjct: 765 SYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVED 824 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 ++ Y+L A+K VG + I+E KP+ +L D RVD K++ +R LE LV A Sbjct: 825 GKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRA 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GA D +R +L SLD + Y+ V ++ ++F G + L Sbjct: 885 GAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVSLFGDA-GDDLPEPRLSSAPDWLP 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQ 1006 + R E + +GFYFSGHPLD Y+P L++ G+ E A ++ ++A V KQ+ Sbjct: 944 NERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQE 1003 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 +K+++G+R +V+ S+P YE F Sbjct: 1004 RKSQRGNRFAFVSLSDPTGLYEITIF 1029 >gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium violaceum ATCC 12472] gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium violaceum ATCC 12472] Length = 1144 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 383/1037 (36%), Positives = 577/1037 (55%), Gaps = 31/1037 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P FVHL++HS +S+ +G + L++ + + A +Q PA+ ++D NLF ++F + G Sbjct: 2 NAPRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+ + ++ +++ ++L EGY+RL EL++ + +Q + Sbjct: 62 IKPIVSADIWLENEEDRDKP----------YRLMLTAKNREGYRRLCELLTEAFSHNQYR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I +WL L+ L+G G + A A +R ++ LF Y+ + Sbjct: 112 GRAEIKRAWLASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEI 171 Query: 187 QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR + LA LP+VAT+ F+ +ED++AH+ + +A + K R Sbjct: 172 QRVDSAQVENVVQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDKRR 231 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR + Y + +MV F+D+PEAL NTVEIA+RC+ + + LP F + + Sbjct: 232 PRSFSECQYFLSAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMSL- 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L ++A GLE RL Q + + DY RL FE + I +M F GYFLIVA Sbjct: 291 ---DDFLVHEAKRGLEERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFIQW K N PVGPGRGSGAGS+ AY+L+ITD+DPL+++LLFERFLNP+R+SMPDFD+D Sbjct: 348 DFIQWGKANGCPVGPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVD 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ+ R VI Y + KYG E V+QI TFG++ +K+ +RDVGR L +P+ DRL KLIP Sbjct: 408 FCQENRWRVIEYTRRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPL 467 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + P+SL+ + L+E++ LE L R HA G++I L+ Sbjct: 468 EANKPLSLEKAMQVEPQIGEIIESEGAQELIELAMTLEDLTRGIGMHAGGVLIAPGRLTD 527 Query: 542 LVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599 P+Y PV+QF+ +E+ GL+KFDFLGL+ LT+++ + ++ G VD++ Sbjct: 528 FCPLYIASGDGASPVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDVDVA 587 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD Y + T T +FQ ES+GM++ L +P E+IIA V+LYRPGP+D I Sbjct: 588 HLPLDDKPAYKVFATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIP 647 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + R +G K +HPL++P+L T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGK Sbjct: 648 DFIQRMHG-AKFEYLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRAMGK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K EEM Q+ F+ GA+K I + A IF+ + KFA YGFNKSHAAAYA+++Y TAW+ Sbjct: 707 KKVEEMVAQRAMFVQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 766 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR--QFNIQIMPPSVNTPCVDFK-VGDNRIY 836 K H+ ++AA+M+ E+DN +++K F D + + + +PP VN F V I Sbjct: 767 KAHHCAAYMAATMSTELDNTDQLKVFYDDCQDPKNGVTFLPPDVNHGFYRFVPVSRKEIR 826 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L AIKG G + HI+E A PF L DFC R D K +N+RV+E+L+ AGA D Sbjct: 827 YALGAIKGTGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAFDAIE 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R L ++ + A+ N +F + + + + +V+ E Sbjct: 887 PNRALLFANVGLAMEAAEQAHAN--ANQGGLFDMFGDDVAPAVEMAATRPWSDAVKLAEE 944 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + +GFY S HP Y+ +R T R LA V + K +G + Sbjct: 945 KLAIGFYLSDHPFSAYEKEVRGFIKTTLSRL--TPRKEPQLLAGFVTGIRVKVGNRGK-M 1001 Query: 1016 GWVTFSEPAKEYEANFF 1032 +V + + E + F Sbjct: 1002 AFVQLDDGTAKLEVSLF 1018 >gi|282862139|ref|ZP_06271202.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE] gi|282563164|gb|EFB68703.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE] Length = 1179 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 334/1068 (31%), Positives = 532/1068 (49%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFEAANTMGMSHIAMTDHGNLHGAYDFFHSAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + + G L + Sbjct: 60 AGVTPIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A + + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178 Query: 175 KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ R ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + + E + + G+ R G +D +++ ++E+++I +M Sbjct: 298 KRDLMPKFEIPDGFTEVTWFQEEVRVGMARRYPGGV------PEDRQKQAEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + + R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLSGITDPKHPRYGEAGEIRGMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKANKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKETLGLTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQAGAKKNGYSDAAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I+ + + DF +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 SD+ S E+ +LG Y S HPL + +L + Sbjct: 952 ESDEPGFGLDVEFSDI-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDASISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1] Length = 1428 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 354/1073 (32%), Positives = 548/1073 (51%), Gaps = 66/1073 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL VHS YS+L+ + ++ K PAIA+TD N+ +A F ++A + I+PI Sbjct: 244 FTHLHVHSQYSVLQATSEIPAMVAKAKEMGMPAIAMTDHGNMMAAFHFVKEALSNDIKPI 303 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ ++ + K+ VL+ GY L +L S + + R Sbjct: 304 LGCEFNLC------RDRKNKSSKDDGYQTVLIAKNKAGYHNLAKLASYANI-EGFYYLPR 356 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I LQ+ LI TGG G I AE+ L +K+ FG+ YV L RH Sbjct: 357 IDKEVLQQY-KGDLIATTGGLWGEIPFLILNVGETQAEEAFLWWKEQFGEDFYVELCRHG 415 Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246 + +++ A H++ A NNS + ++ D +AHD+L+ V +V + + Sbjct: 416 IPEEEKVNEVLLEFAKKHDVKYFAANNSYYTNKADAKAHDILLCVKDGELVEKPKKYIGK 475 Query: 247 --------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVHAP 290 ++Y+K+ EM +F+DLPEA+E T EI + P Sbjct: 476 RGREFRYGFPNDEYYIKSPEEMKKLFADLPEAIECTAEITDKIEPYKLAREVLLPAFDIP 535 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + E E D ++ E LR+ G + + +RLDFEL I Sbjct: 536 DEFKHPEDEVDGGKRGENAFLRHLTYEGAKK-------RYEEITPEIEERLDFELKTIEN 588 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + GYFLIV DFI A+K + VGPGRGS AGS AY IT+IDP+ ++LLFERFLNP Sbjct: 589 TGYPGYFLIVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLNP 648 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 DR+S+PD DIDF R +VI YV KYG +VAQIIT+G++ AK+A+RD R L +P + Sbjct: 649 DRVSLPDIDIDFDDHGRQKVIDYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPLA 708 Query: 471 QVDRLCKLIPNDPAHPVSL----------------QAIADDSRFREARLADPSVDRLLEI 514 RL L+P+ + + IA + + Sbjct: 709 DAGRLANLVPDIKLKALFGLAGNRAALSDKLKGQGELIAKADELIRISKGQDESAKTINQ 768 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEG R+ HA G++I ++ VP+ SD+ TQF+ +E AGL+K DFL Sbjct: 769 ATMLEGSVRNLGIHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAGLLKMDFL 828 Query: 575 GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLTL++ ++ + +R D P DD +TY L T+GIFQ ES+GM++ + Sbjct: 829 GLKTLTLIKDAVKIVKERHGIELDPEKFPIDDVKTYELFQRGETVGIFQYESAGMQKYMR 888 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 ++P D+IA+ +LYRPGP++ I + RK+G+E I ++ L ET G+ +YQE Sbjct: 889 ELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGEEPITYDLDDMEEYLNETYGITVYQE 948 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM ++Q L+G++ EADVLR+AMGKK+K+ +DK K +F++ A++ G K+ I++ Sbjct: 949 QVMLLSQKLAGFTKGEADVLRKAMGKKLKDVLDKMKPKFVNQAAEKGHDKSKLEKIWKDW 1008 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH+ YA ++YQTA++K HYP E+LA+ ++ M+++ ++ F ++ ++ Sbjct: 1009 EAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYLASVLSNNMNDISQVTFFMEECKRSG 1068 Query: 814 IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 I ++ P VN F V + I + +AAIKG G+ I++ + PF +L DF R Sbjct: 1069 IPVLGPDVNESKNGFTVNAEGEIRFGMAAIKGAGSAAVDEIIKEREENGPFKNLFDFAKR 1128 Query: 872 VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923 V+SK LN++ +E+L AG DCF + R Q L++ ++ KYAQ V++ + Sbjct: 1129 VNSKALNKKTMEALAMAGGFDCFPEHHRRQYLEAADGDLTLIEKATKYAQKVQQEEESAQ 1188 Query: 924 ENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F G+ ++ + + E+ V+G Y SGHPLD Y+ + Sbjct: 1189 VSLFGGSSGSMDIPLPSVAPMEPFSQLQQLNIEKEVVGLYISGHPLDQYRLEIESFTNAN 1248 Query: 983 YEESVAT---IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + I+LA V S + T+ G G +T + + F Sbjct: 1249 LPDLNDIDSFKNKKEIKLAGSVSSFAHRTTKNGKPFGTLTMEDYHGGFTFFLF 1301 >gi|260910104|ref|ZP_05916781.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260635608|gb|EEX53621.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 1235 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 368/1110 (33%), Positives = 571/1110 (51%), Gaps = 91/1110 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 FVHL VH+ YS+L+G S+ ++DK A+ +A+TD N+F EF Sbjct: 3 DFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFYNYCKKVNAKR 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +PIIGC++ + + + +++L GY+ LI+LVSR Sbjct: 63 KEEGLPAFKPIIGCEMYVARHRKTDKVKENGDM--SGYHLIVLAKNYTGYKNLIKLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L+ EGLI+ + +G + R N + A + + ++FG Sbjct: 121 W-VDGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++++A + +V TN++ F+ +E+ E Sbjct: 179 DDYYLELQRHEVKDPYIRANREAYPLQQRANKVMLEMAEEMGINVVCTNDAHFVDQENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R + + K R EM +F DLP+A+ NTVEI + Sbjct: 239 AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVETYSI 298 Query: 287 VHAPILPRFIEKECDDIQK--------------------------EEENELRNKAVAGLE 320 H+PI+P F E ++ EE E + K + G E Sbjct: 299 DHSPIMPFFPIPEDFGTEEQWRERISEKELYDEFTSDENGQNQLPPEEGEDKIKKLGGYE 358 Query: 321 VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A +++ R+R++FEL+++ M F GYFLIV DFI Sbjct: 359 KLYRIKFEADYLAKLAYDGAKRLYGEPLSEEVRERVNFELHIMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF Sbjct: 419 TAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R V+ +V++KYGH++VA IIT+G++ K +++DVGR ++P V+ LCKLIP+ Sbjct: 479 DGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKLIPDKLP 538 Query: 485 HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI REA + D + + ++ LEG R HA G +I +S Sbjct: 539 DGMKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTIICRDAIS 598 Query: 541 QLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 VP+ D L TQ++ IE+ GLIK DFLGLKTL++L+++++ + G Sbjct: 599 DWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENVRISTGE 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD +TY L T+G FQ ES+GM++ L +QP ED+IA+ +LYRPGP Sbjct: 659 TIDLEKIPIDDPKTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK K+ P ++ LK+T G+ +YQEQVM +++ L+ ++ ++D LR Sbjct: 719 MDYIPDFIARKRDPSKVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK+ +MDK + F G KNG K + I+E KFA Y FNKSHA Y+ +++ Sbjct: 779 KAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATCYSWVAF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTA+ K HYP E++AA M+ + N+ I KF + R I+ + P VN + F V Sbjct: 839 QTAYFKAHYPAEYMAAVMSRNLANIADITKFMDECRAMGIKTLGPDVNESRLKFSVNKHG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A+ I++ + P+ S+ D RV+ +N++ +ESL +G D Sbjct: 899 EIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG +R + +DN+ +Y Q + + ++F + + Sbjct: 959 SFGIARESYFGTDSKGSTFIDNLTRYGQLFQMEQQQMRNSLFGDSNAVEVATPPVPQAER 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002 +S R E+ ++G Y S HPLD YK +L+ M G E +A ++ + LA MV Sbjct: 1019 WSSIERLNKERDLVGIYLSAHPLDDYKIVLQAMCNTGCNELEDKMALVQKAEVTLAGMVT 1078 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T+ G G+VT + + E FF Sbjct: 1079 NTRSAVTKMGKPCGFVTIEDYSGSGELAFF 1108 >gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1] gi|237877396|gb|ACR29729.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1] Length = 1182 Score = 725 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 404/1045 (38%), Positives = 596/1045 (57%), Gaps = 39/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+VHS +S+ +G + L++I+ AAD Q A+A+TD N F + F ++A + Sbjct: 1 MAD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI GC + I D+ ++LLV GY L EL+S+ +L +Q Sbjct: 60 KGIKPIAGCDVWITNHDDRDKPA----------RLLLLVRDKSGYLNLCELLSKAWLTNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I WL+ GL+ L+G G I A +++ A + + ++F Y+ Sbjct: 110 YRGRAEIDPQWLESELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYI 169 Query: 185 NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR+ V+LA +LP+VAT+ F+ +ED+ AH+ + ++ +++ Sbjct: 170 ELQRYGQPGAEAYIQDAVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANP 229 Query: 244 DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + ++EM +F+DLP A+ NTVEIA+RC+ +++ P LP F + Sbjct: 230 RRQKRFTTEQRFRTQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMS 289 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ L + GLE +L + Y QRLDFE I +M F GYFLI Sbjct: 290 L----DDYLVQLSKEGLEKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y D + KLI Sbjct: 406 IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465 Query: 480 PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P P V++ + ++ +E + V +LL+++Q++EGL R+ HA G++I Sbjct: 466 PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595 L+ P+Y V+Q++ +E GL+KFDFLGL TLT+L + F+ + Sbjct: 526 LTDFCPLYAQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKAD 585 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD ++ +L T+ +FQLES GM+ L+ QPD EDIIALVSLYRPGP+ Sbjct: 586 WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 646 DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+KNG+++ + IF+L+ KFA YGFNKSHAAAYA+++Y Sbjct: 706 AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K H+P EF+AA+MTL MD+ +K+K D I+++PP +N F+ Sbjct: 766 TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVLNGIKVLPPDINQSEYRFEPVGEAD 825 Query: 835 ------IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I Y L A+KG G I+ A PF L DFC R+D + +NRR +E+L+ Sbjct: 826 GKRSKTIRYGLGAVKGSGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIR 885 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D +R QLL S+ + +F + L + Sbjct: 886 AGAFDSLTPNRAQLLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWD 942 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R + E+ LGFY SGH D Y+ +R+ E +A ++ S + + Sbjct: 943 DKRRLQEEKGALGFYLSGHLFDAYRAEVRRFARMKLGELKEGRDK---LVAGVIASLRTQ 999 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T++G + + + E F Sbjct: 1000 MTQRGK-MIIALLDDGTGQCEITVF 1023 >gi|257064824|ref|YP_003144496.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM 20476] gi|256792477|gb|ACV23147.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM 20476] Length = 1166 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 340/1055 (32%), Positives = 541/1055 (51%), Gaps = 45/1055 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE---FSQKACAA- 65 +FVHL H+ YS+L+GA + ++ + A PA+AITD + E + Sbjct: 2 AFVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKET 61 Query: 66 GI--QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G+ +PI GC++ + G + ++LL GY L+ +VS ++ D Sbjct: 62 GVYVKPIYGCEVYFTEDREI-----GTRKKSPLYHLILLAKNNVGYHNLLHIVSESHM-D 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R + L++ +EG+I T SG + R + A F +F Sbjct: 116 NFFYKPRTTIDVLEKY-SEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDF 174 Query: 183 YVNLQ------RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 YV LQ R + +Q+ Q+A L +ATN+ +L+ ED A D+++ + Sbjct: 175 YVELQDQGLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGT 234 Query: 237 STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 ++ ++R R + D + EM D PEA +NT+E+A +C L+ + + Sbjct: 235 GSLRDDENRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELERDSVLPRFP 294 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + EE R + GLE R + I+ G H +R ++E +VI + Sbjct: 295 LPP-----GYTEEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQQ 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFLIV ++I+WAK++ I VGPGRGS AG++ YA+ ITD++PL LLFERFL+P+ Sbjct: 350 GFPAYFLIVQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+ MPD D+DF +RR EVI +V+ YG + +A +ITFG LQAK A+RD R L PY+ Sbjct: 410 RVEMPDIDVDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNT 469 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DRLCK+I ++ + AI ++ + +P +L+ + +EG R HA Sbjct: 470 GDRLCKVIGDELGIKLK-DAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACA 528 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +I PL VP+ RD + +TQ++ + + GL+K DFLGL+TL +L ++ + Sbjct: 529 TIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKD 588 Query: 592 RG-VKVDLSLIPFDDHETYHLLT---TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 R + + IP DD Y L+ G+FQ+ES+ M+P DI+A + Sbjct: 589 RFGITIVPDEIPIDDEGAYKLMRLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASI 648 Query: 648 SLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +L RPGP++ + +Y +R+ G++ + + P+L+ET G I+YQEQ+MQI+ +SG+ Sbjct: 649 ALNRPGPLENGFVDLYVDRRMGRKPVSYYDDRLKPLLEETYGTIVYQEQIMQISMAMSGF 708 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 S +AD LR+AMGKK E M + K+ + +GA +NG S IA I+ +FA Y FNKSH Sbjct: 709 SAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKSH 768 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYAV+ +TA+MK HYP E++AA ++ M + +K+ K+ + I ++PP +N+ Sbjct: 769 SAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSSN 828 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884 ++F + I + LA ++GVG A I+ PF SL DF +RVD K NR+ LE+ Sbjct: 829 LEFTPLEEGIRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLEA 888 Query: 885 LVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI 938 LV AGA D GY+R QL+ +D + + +++R N ++F E F + I Sbjct: 889 LVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEEDI 948 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRL 997 + E+ +L Y S HPL Y+ LR + + N Sbjct: 949 PAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSLRSISKFQLGDLADHKGDIKNGVF 1008 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + Q K T+KG ++ + + F Sbjct: 1009 CGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCF 1043 >gi|157693324|ref|YP_001487786.1| DNA polymerase III DnaE [Bacillus pumilus SAFR-032] gi|157682082|gb|ABV63226.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1111 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 367/1026 (35%), Positives = 569/1026 (55%), Gaps = 39/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+VHLQVHS YSLL A + ++ K A+A+TD + ++ +EF ++ I+P Sbjct: 2 SYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG + + + +VLL EGYQ LI++ S + + K Sbjct: 62 VIGLTASVFIDEQ----------ETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL+ GLI +T G SG I+ + + A K +FG+ +Y+ LQ Sbjct: 108 GLKEKWLKSYHR-GLIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D +++ ++ ++PLVAT + ++ ED A+ L A+ + + + R Sbjct: 167 F-QQDESLVAKLRDVSKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRA 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 EM ++ E L TVEIA RC L + LP + + Q + Sbjct: 226 EKHFRTF--EEMKEWYTQDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR G++ R Y +RL++EL++I +M FS YFLIV DF+++A Sbjct: 280 QFLRKVCAEGMKQRKI-------ASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GPGRGS AGS+ AY L ITD+DPL LLFERFLNP+R+SMPD DIDF RRD Sbjct: 333 DQGIVTGPGRGSAAGSLVAYVLFITDVDPLCHGLLFERFLNPERISMPDIDIDFPDTRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+I YV++KYG VAQI+TFG+L AKAALRDVGR + + DRL KLIP+ P + Sbjct: 393 EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+ D Sbjct: 453 EA-LTASPELKTMLQQSEELSQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M ++E GL+K DFLGL+ LTL++ Q V ++ S I ++D + Sbjct: 511 GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES GMRQ L ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 571 TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + K+ HP + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ KK K+ +D+ Sbjct: 631 RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F Sbjct: 691 ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +K+ ++ +A++ I ++ PS+N F V I YSL AIK VG Sbjct: 751 MCGLLTSVIGNQDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I A +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D +R LL S+D Sbjct: 811 SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + ++ + + TFS K + + E+ LG Y S HP Sbjct: 871 ALDHVSFLN---PDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + Y+ LR+ G + I+ + + ++ + +T+ G + +VTF + E Sbjct: 926 VQAYRDRLRENGAVEIIRLSSFIK-RKVSMGGLLTKVKSIRTKNGQSMAFVTFGDETGEM 984 Query: 1028 EANFFP 1033 E FP Sbjct: 985 EGVVFP 990 >gi|312888892|ref|ZP_07748454.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM 18603] gi|311298633|gb|EFQ75740.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM 18603] Length = 1195 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 359/1067 (33%), Positives = 564/1067 (52%), Gaps = 48/1067 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F HL VH+ +SLL+GA ++ + K AAD A+AITD N+F +F +A ++ Sbjct: 2 PDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI+GC+ + + K + K + L AEGY+ LI+L S Y+ + Sbjct: 62 PIVGCEFYVVDDRHKKQFTKEKKDVRR--HQLFLAKNAEGYKNLIKLCSLGYMEGLYSKW 119 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 RI + + +GLI + + +A + + AE + LFG+ Y+ LQR Sbjct: 120 PRIDKELILKYH-KGLIATSCCIGASVPQAILKATEEEAETEFKWWLDLFGEDYYIELQR 178 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK---- 243 H ++ + +++ A + + + +N+S ++ ++D AHD+L+ V + S Sbjct: 179 HEIPEQTIINNTLLKYAKKYNVKTICSNDSHYVDQQDSNAHDILLCVNTGDMQSTPIATD 238 Query: 244 -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 Y K ++EM +F D+PE+L+NT EI + + +LP F Sbjct: 239 EEGGKGYRFGFPNDQFYFKTQAEMGQLFHDIPESLDNTNEIVDKVDVLKLKRDIMLPNFP 298 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 I E++ N+ + + + +R++FEL I M F+GY Sbjct: 299 IPPEFAIHTGPESDTLNQWEYLKHLTFTGAKERYIDISLETEERINFELFTIRTMGFAGY 358 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI+ + + +GPGRGS AGSV AY IT+IDP++++LLFERFLNPDR SMP Sbjct: 359 FLIVADFIKHGRDIGVFIGPGRGSAAGSVVAYCTGITNIDPMKYNLLFERFLNPDRKSMP 418 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D DF + R +VI YV KYG +VAQIIT+GS+ A+ +++DVGR L MP S+V+ + Sbjct: 419 DIDTDFDDEGRQKVIDYVVEKYGKNQVAQIITYGSMAARTSIQDVGRVLDMPLSEVNLMK 478 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KL+P+ + AI + + ++L ++KLEG R+ HAAGI+I Sbjct: 479 KLVPDTLGITLK-DAIEQVPELKAILEGNDLRSQVLRAAEKLEGSVRNTGVHAAGIIIAP 537 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 L+ +VP+ SDL VTQ++ + IE AG+IK DFLGLKTLT+++ +L + Q + Sbjct: 538 DDLTNIVPVAVAKDSDLLVTQYDGRVIEDAGVIKMDFLGLKTLTIIKGALRMIKQNHGRE 597 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ I DD +TY L T G FQ ES GM+ L ++PD ED+IA+ +LYRPGPI Sbjct: 598 IDIDYIDLDDQKTYELYQRGDTNGTFQFESDGMQMYLRDLKPDKFEDLIAMNALYRPGPI 657 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + I + RK+G E I P ++ L ET G+ +YQEQVM ++Q L+G+S +ADVLR+ Sbjct: 658 EYIPNFIKRKHGLEPITYDLPDMEEYLAETYGITVYQEQVMLLSQKLAGFSKGDADVLRK 717 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK E ++K + +F+SGA+ G K I+ FA Y FNKSH+ YA+++YQ Sbjct: 718 AMGKKQIEILNKMEAQFVSGATAKGHPKDKLTKIWNDWKAFAQYAFNKSHSTCYALVAYQ 777 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TA++K HYP E++A+ + + + EKI F ++ R+ ++ P VN V F G+ Sbjct: 778 TAYLKAHYPSEYMASVLNNQNNM-EKISFFMEECRRMGTLVLGPDVNESSVLFTATGNGN 836 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+ IKGVG I+E + F S+ +F R ++K +NR+ E++V++GA D Sbjct: 837 IRFGLSGIKGVGDKAVESIIEERDKNGAFTSVYEFAQRSNTKAVNRKSYENMVYSGAFDS 896 Query: 894 FGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG+ R Q ++ + KYA + + + ++F ++ + T+ + Sbjct: 897 FGFKRAQFFAKTENGVLSGIERLTKYANDYQNTQNSSQSSLFGGSVASYIPEPTMPEAEE 956 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRG-------- 992 + + E+ V+G Y +GHPLD YK L + + + G Sbjct: 957 FPLIEKLKYEKEVIGIYLTGHPLDNYKIELERFCKHTVADLKLIQRMKNKEGGEETEIAF 1016 Query: 993 -------NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + ++ S Q K T+ G G F + YE F Sbjct: 1017 NNLRRTASELSIGGLLSSVQHKTTKTGKPFGTFVFEDYFDSYEFALF 1063 >gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152] gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM 10152] Length = 1196 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 319/1065 (29%), Positives = 518/1065 (48%), Gaps = 45/1065 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S SFVHL H+ YS+L+GA ++ + + A+ +TD N++ A EF A Sbjct: 17 ASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKH 76 Query: 66 GIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIG + I + + ++ A G + L +L Sbjct: 77 GLKPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKL 136 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S + Q + R+ + + EG+I TG SG + + A + ++ Sbjct: 137 SSLASIEGQLGKWARMDAEIIAQ-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQ 195 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG D ++ + H +R ++ + +P +ATN+ ++ E D H+ L+ Sbjct: 196 EIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLC 255 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 V +S R + Y + + D + Sbjct: 256 VQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHR 315 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + + L + + GLE R G ++Y +R ++EL+VI M F Sbjct: 316 DRMPIFPVPEGETQASWLHKEVMRGLERRFPNGV------PEEYLRRAEYELDVICEMGF 369 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+ Sbjct: 370 PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 429 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD DIDF RR E++RY K+G +RVAQ+ITFG+++ KAA++D R Sbjct: 430 SMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 489 Query: 474 R-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 + K IP + + + RE +P V ++ E ++ LEGL Sbjct: 490 ADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEGLI 549 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 550 RNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 609 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +LD + RG+ +D+ +P DD TY LL+ TLG+FQL+ S MR L MQP E Sbjct: 610 GDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 669 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++++ IHP ++ LK +T G+I+YQEQ+ Sbjct: 670 DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQI 729 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQIAQ ++GYSL AD+LRRAMGKK E ++ + E F +G +NG SK +++ + Sbjct: 730 MQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTILP 789 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 790 FAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGIT 849 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874 ++PP VN +F I + L A++ VG I++A +K F D+ +++D+ Sbjct: 850 VLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKIDA 909 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 ++V ESL+ AGA D G+ R L+ + +K ++F Sbjct: 910 IACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGMDADE 969 Query: 935 SDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988 S + + + + E+ +LG Y SGHPL+ + +L + Sbjct: 970 SVTSVFNVKVPD-EEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAILEGD 1028 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S ++ + G + E FFP Sbjct: 1029 VKDGAQVTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFP 1073 >gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503] gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503] Length = 1152 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 516/1041 (49%), Positives = 671/1041 (64%), Gaps = 27/1041 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ FVHL +HSSYSL EGA+ ++ L Q PA+A+TDTNNLF ALE ++ A Sbjct: 1 MAKT--FVHLHLHSSYSLAEGAIPVSKALQLAKGHQMPALAVTDTNNLFGALEVAEILSA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI G +L + + + + SIVLL A G++RL+ L S +L Sbjct: 59 EGVQPIPGIELKVATES----AEPVRDEAGNLASIVLLAQNAVGFERLMALSSEAFLTPL 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ + LS + + TEGLI L+GG+ GPIDR A L F R YV Sbjct: 115 EGETTGVPLSAVLQR-TEGLICLSGGALGPIDRLLAEGRCSEALALLDRMAAAFPQRFYV 173 Query: 185 NLQRHRGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 LQRH +DR E +V+ AY LP+VATNN F S D+ AHD L+ +A Sbjct: 174 ELQRHPHHDRTDQQGRYPEERALVEAAYARSLPIVATNNVYFPSPADHAAHDALLCIAGG 233 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +S+ DR V+ DHY K+ EM +F DLPEA+E TVE+A+RC+F + H PI Sbjct: 234 RYLSEVDRRLVSEDHYFKSAEEMSGLFKDLPEAIETTVEVAQRCAFRPRTHQPI-----L 288 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E ELR +A GL RLA I QDY RL+ EL +I +M F GYF Sbjct: 289 PSFAGDLAGEVAELRRQAEEGLAARLAD--IPAAAPHQDYYDRLERELGIIEKMGFPGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFIQWAK IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPD Sbjct: 347 LIVADFIQWAKSAGIPVGPGRGSGAGSLVAYALTITDLDPLRFHLLFERFLNPERVSMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQDRRDEVI YV+++YG +RVAQIITFG LQA+A LRDVGR LQMP+ QVDRLCK Sbjct: 407 FDIDFCQDRRDEVIAYVRDRYGADRVAQIITFGKLQARAVLRDVGRVLQMPFGQVDRLCK 466 Query: 478 LIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 ++PN+PA+PV+L+ D + RFRE R DP V L++ + +LEGLYRHASTHAAG+VIGD Sbjct: 467 MVPNNPANPVTLKEAVDGEPRFREERERDPMVGTLIDTALRLEGLYRHASTHAAGVVIGD 526 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 RPL++LVP+YRD RSD+P TQ+NMKW+E AGL+KFDFLGLKTLT++Q++LDFL G + Sbjct: 527 RPLTELVPLYRDSRSDMPATQYNMKWVEPAGLVKFDFLGLKTLTVIQRALDFLKADGTDL 586 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D+S IP DD TY +L +G+FQLES+GMR L+G+Q DC+EDIIALVSLYRPGP+D Sbjct: 587 DISAIPLDDPATYDMLGRGAAIGVFQLESAGMRATLKGLQADCLEDIIALVSLYRPGPMD 646 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 NI Y RK G+E +HPL++ +LKET GVIIYQEQVMQIAQ+L+GYSL EAD+LRRA Sbjct: 647 NIPTYIERKAGREPPDYLHPLLEDVLKETYGVIIYQEQVMQIAQILAGYSLGEADLLRRA 706 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK KEEMDKQK RF+ GA++ G+S A IFEL+AKFA YGFNKSHAAAYA +SYQT Sbjct: 707 MGKKKKEEMDKQKIRFVDGAAEKGVSAAKAEGIFELVAKFAGYGFNKSHAAAYAWVSYQT 766 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K ++P FLAASM+L+ +K+ F +A++ + + PP VN DF V + Sbjct: 767 AYLKANHPAAFLAASMSLDQSLTDKLSVFVAEAKRCGVVVEPPCVNESQADFAVSGETLR 826 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 Y+L A+K VG + + A PF L D RVD +K+ +R LE L AGA D G Sbjct: 827 YALGALKNVGAEGMQVLTTERARGGPFRDLYDLAERVDLRKVGKRSLEQLARAGAFDALG 886 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFEN 954 R + + D + +Y+ + R + +F +G + L + + R E Sbjct: 887 VDRASAMAAADFLLRYSAAAAEERGSAQAGLFGGMAEGESLARPALPQCPPWPNVERLEQ 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRK 1011 E+ LGFY SGHPLD + +L G Y + + + ++ LA V +++++ Sbjct: 947 ERTALGFYMSGHPLDDFDSLLAAKGAVSYADIASVVGEGESRHVCLAGAVNEVTRRRSKS 1006 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G WV S+ + ++E F Sbjct: 1007 GKPFAWVRLSDRSGDFEVTVF 1027 >gi|182439233|ref|YP_001826952.1| DNA polymerase III subunit alpha [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467749|dbj|BAG22269.1| putative DNA polymerase III alpha subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1178 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 329/1066 (30%), Positives = 531/1066 (49%), Gaps = 46/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A + PIIG + + + + + S G L Sbjct: 60 ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A + + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178 Query: 175 KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ R ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + + E + + G+ R G D ++++++E+++I +M Sbjct: 298 AKNLMPKFEIPDGFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + ++ R ++P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S +++++L Sbjct: 712 QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L AI+ VG I+ + + + DF +V+ Sbjct: 832 VLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F + Sbjct: 892 AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951 Query: 934 FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987 + + E+ +LG Y S HPL + +L + + Sbjct: 952 SGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQLMGG 1011 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 DYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|314918129|gb|EFS81960.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA1] Length = 1190 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 336/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHDLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E ++ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105] gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105] Length = 1176 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 401/1069 (37%), Positives = 590/1069 (55%), Gaps = 61/1069 (5%) Query: 5 LEKSP-----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59 + S +FVHL++H+ +S+L+G + + + A PA+AI+D +NLF ++F Sbjct: 1 MTNSSPTLPSTFVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFY 60 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 KA AG++PI C + I+ + + ++LLV +GY +L EL+SR Sbjct: 61 GKARGAGVKPIAACDVWIESDRDEEQPA----------RMLLLVQNHKGYLQLCELLSRA 110 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 +L +Q + + W E+G +GLI ++G +S I + + AE F K F Sbjct: 111 FLRNQKRGKATLKFEWFDEVGCDGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFE 170 Query: 180 DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R Y+ LQR + QLA +LP+VAT+ FL ED+ AH+ + +A Sbjct: 171 GRYYIELQRDGSTQAENLVNLSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGE 230 Query: 239 VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++S RPR T Y K EM +F+D+P A+ N++ IA+RC+ L++ P LP F Sbjct: 231 ILSNPRRPRRFTEQQYFKTAQEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPT 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFS 354 + ++ L + + GLE RLA + + +Y RL E + I M F Sbjct: 291 PDGM----TLDDYLVHLSKEGLEKRLAHLFPSIEEREKMRPEYEARLKIECDTIIGMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI W KKN +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+S Sbjct: 347 GYFLIVQDFINWGKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQD RD VI YV+ YG + V+QI TFG+L AKA +RD GR L MPY D Sbjct: 407 MPDFDIDFCQDNRDRVIDYVKQNYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDG 466 Query: 475 LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 L KLIP PA P +A+AD+ FRE + ++ +++ LEGL R+ HA G++ Sbjct: 467 LSKLIPQTPADPWDLDRAMADEPTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 I L+ P+Y S D V+Q++ +E GL+KFDFLGL+ LT+L ++ ++ + Sbjct: 527 IAPGKLTDFCPLYCADGSTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVREN 586 Query: 593 G---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 L +P DD Y L + T +FQ ES + + ++PD EDIIAL++L Sbjct: 587 YEDQRDFRLEDLPLDDPAVYQLFSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMAL 646 Query: 650 YRPGPIDNIVVYNNRKNGK--------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701 RPGP+ + +V + K HP ++ +LK T GVI+YQEQVM +AQ+ Sbjct: 647 NRPGPLGSGMVDDFIARKKETSKTGKGRAEWYFHPKLEGILKSTYGVIVYQEQVMLVAQI 706 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL AD+LRRAMGKK EEM KQ+E F +GA++ G+ +A +F+L+ KFA+YGF Sbjct: 707 LAGYSLGGADLLRRAMGKKKPEEMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYGF 766 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI------- 814 NKSH+AAYA+I+Y TAW+K HYP EF+AASM+ +MD+ +K+K F +DA Sbjct: 767 NKSHSAAYALIAYHTAWLKAHYPAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKAG 826 Query: 815 ---QIMPPSVNTPCVDFKVGD-------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863 ++ P VN F + I Y L A+KG G I+ A+ PF Sbjct: 827 TTVTMLGPDVNESNFRFTAVRIDGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPFT 886 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 SL DF RVDSK++NRRV+E+L+ AGA D R +LL S ++A + Sbjct: 887 SLFDFVKRVDSKQINRRVIEALIRAGAFDALNPDRAKLLASSGQAMEWAAQQAATASQ-- 944 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 ++F + G + L + + + + E+ LG+YFSGH + +R+ Sbjct: 945 VSLFGEDLGGDAP-PELVEVPTWSEREKLQQEKAALGYYFSGHLFKADEANVRQFVKLRL 1003 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + +A ++ S + T++G + V + + E + F Sbjct: 1004 KDLSPGRD--MVWMAGVIASLRTMMTKRGK-MAIVLLDDSTAQVELSIF 1049 >gi|314923593|gb|EFS87424.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL001PA1] gi|314966638|gb|EFT10737.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA2] gi|314981367|gb|EFT25461.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA3] gi|315092033|gb|EFT64009.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA4] gi|315103640|gb|EFT75616.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA2] gi|315105689|gb|EFT77665.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA1] gi|327327462|gb|EGE69238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL103PA1] Length = 1190 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 ++PIIG + + D + + + + Sbjct: 60 YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|313764330|gb|EFS35694.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA1] gi|313815868|gb|EFS53582.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA1] gi|314915320|gb|EFS79151.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA4] gi|314920206|gb|EFS84037.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA3] gi|314931729|gb|EFS95560.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL067PA1] gi|314955630|gb|EFT00032.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA1] gi|314958026|gb|EFT02129.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA1] gi|315098658|gb|EFT70634.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA2] gi|315101339|gb|EFT73315.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA1] gi|327450658|gb|EGE97312.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA3] gi|327454004|gb|EGF00659.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA2] gi|328753262|gb|EGF66878.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA2] gi|328754076|gb|EGF67692.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA1] Length = 1190 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 336/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 I+PIIG + + D + + + + Sbjct: 60 YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + + G+I TG SG + Sbjct: 120 WAKDSEGLHDLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + FS YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E ++ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L AI+ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|315092840|gb|EFT64816.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL060PA1] Length = 1190 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 ++PIIG + + D + + + + Sbjct: 60 YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34] gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34] Length = 1176 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 411/1054 (38%), Positives = 613/1054 (58%), Gaps = 45/1054 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G Sbjct: 11 SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGG 70 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + + ++ ++LLV GY L L+SR +L +Q + Sbjct: 71 VKPVVGADVWLTNAEDRDKPA----------RMLLLVQDRIGYLNLCTLLSRAWLGNQHR 120 Query: 127 QSVRICLSWLQEIGTEGL------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 WL E G EGL I L+G G + +A + + A + + ++F Sbjct: 121 GRAEFEPGWLGEPGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQ 180 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 R Y+ LQR Q VQLA + +LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 181 RYYIELQRAGQPGTDAYVPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 240 Query: 240 VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL+N+VEIA+RC+ L++ P LP F Sbjct: 241 LANPRRTRKFTTDQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTP 300 Query: 299 ECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE R+ + +Y RL+FE I +M F G Sbjct: 301 DGMSL----DDYLVFMAKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPG 356 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 357 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 416 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD + Sbjct: 417 PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGV 476 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 477 AKLIPFKPGKLVTLEEAKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 536 Query: 535 GDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 L+ P+Y + V+Q++ +E AGL+KFDFLGL TLT+L + ++ + Sbjct: 537 APGRLTDFCPLYTQGTDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRL 596 Query: 592 --RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP DD + +L + T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 597 DPSKADWNCSQIPLDDSPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 656 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 657 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGG 716 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM K ++ F GA KNG++ A +IF+L+ KFA YGFNKSHAAAY Sbjct: 717 ADLLRRAMGKKKPEEMAKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAY 776 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D R I+++PP VN F Sbjct: 777 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCRLNKIEVLPPDVNASEYRFA 836 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L IKG G I+ A ++PFD L DFC RVD +++NRR +E+L+ A Sbjct: 837 PTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRA 896 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVEN 947 GA D +R QLL S+ + A +K + ++F + S + L Sbjct: 897 GAFDSLNDNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGASHRPELVDEPRWT 954 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR---LA 998 + E++ LG+YFSGH D + +R+ ++ G ++R +A Sbjct: 955 PKRTLQEEKQALGYYFSGHLFDASRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKVIA 1014 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + + T++G I + + + E F Sbjct: 1015 GVITGIRTQMTQRGKLIIVL-LDDGTAQIEMTVF 1047 >gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184] gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184] Length = 1266 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 371/1146 (32%), Positives = 575/1146 (50%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAG--- 66 F+HL VH+ YSLL+G S++ ++DK D PAIA+TD +F EF K + G Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63 Query: 67 -----------------------------------------IQPIIGCQLDIDMQDNLKM 85 +PI GC+ Sbjct: 64 GAIKDYEKELKELKSKTELTAEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHSK 123 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + +++L GY+ LI++VS + + RI L++ E LI Sbjct: 124 LAS--QNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------- 196 + + G I + AE+ +L FK LFG+ Y+ +QRH +D Sbjct: 180 ICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQV 239 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++LA H + ++ATN+ F++ ED EAHD L+ ++ + +R R T ++ Sbjct: 240 TANKAILELARKHNIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306 K +EM +IFSD+PEAL NT+EIA + F H PI+P F E ++E Sbjct: 300 KTTAEMNTIFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEEYRQKFTEQ 359 Query: 307 ---------------------------------------EENELRNKAVAGLEVRLAQGA 327 E + L+ G ++ Sbjct: 360 DLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDDL 419 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS Sbjct: 420 ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA I Sbjct: 474 AYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503 IT+G++ K+A++DV R ++P ++ +RL KL+P D AI +EA Sbjct: 534 ITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAAT 593 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558 DP L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ Sbjct: 594 GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + D+ I +D TY L T Sbjct: 654 EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHDLDIDHISLEDPATYKLYCDGKT 713 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+ Sbjct: 714 TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G Sbjct: 774 MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGK 833 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + Sbjct: 834 TNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLS 893 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-E 855 N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG ++I+ E Sbjct: 894 NIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEE 953 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908 + P+ + DF RV+ N++ +ESL AGA D FG R Q L+ + Sbjct: 954 RRKNGPYKDIFDFVERVNLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETL 1013 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + +++ ++F + K + K + R E+ ++G Y S HPL Sbjct: 1014 VRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPL 1073 Query: 969 DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ IL + G E G ++ +V ++ T+KG+ G + + Sbjct: 1074 DEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTGS 1133 Query: 1027 YEANFF 1032 E F Sbjct: 1134 GEIALF 1139 >gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21] gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21] Length = 1493 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 351/1117 (31%), Positives = 560/1117 (50%), Gaps = 109/1117 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKAC 63 +VHL H+ +S+L+ +S+ +++ A + PA+AITD N+ A F KA Sbjct: 259 DYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHANMMGAFHFVSNVLNHNKAA 318 Query: 64 AAG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108 A I+PI+GC+ + + KT IV+L G Sbjct: 319 EAKNKTAVENGEEPSEVIIKPIVGCEFFVCDN------HADKTRKDNGYQIVMLAKNKAG 372 Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y L ++ S Y D RI +++ E +I+L+G G I AE Sbjct: 373 YHNLAKMSSLAYT-DGFYYVPRIDRKIIEQY-KENIIVLSGNLYGEIPNKLLNMGENQAE 430 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + L+ +K+ FG+ Y+ L RH D R + +V+LA H + L+ATNN+ ++++ED + Sbjct: 431 EALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNTYYINKEDAHS 490 Query: 228 HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 HD+L+ V + ++ ++Y K+ EM +F+D+PEA+ N EI + Sbjct: 491 HDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEAIANIQEIVDK 550 Query: 281 CSFILQVHAPILPRFIEK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332 +LP+F + D ++ E LR+ G R ++ Sbjct: 551 VEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKRYSE------- 603 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 + R+RLDFEL I + + GYFLIV DFI A++ + VGPGRGS AGS AY L I Sbjct: 604 ITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYCLGI 663 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T+IDP+ + LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+G++ Sbjct: 664 TNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTM 723 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFRE 500 AK+++RD R L +P + D++ KL+PN + + + Sbjct: 724 AAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELESVRELIN 783 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 + + ++ LEG R+ HA G++I ++ VP+ S+L VTQF+ Sbjct: 784 LANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYVTQFDN 843 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E AGL+K DFLGLKTLTL++ ++ + + P DD +TY L T+G Sbjct: 844 SVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQRGETVG 903 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E I + Sbjct: 904 IFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYDLEACE 963 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK ++ +DK K +F+ A++ Sbjct: 964 EYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQQAAEK 1023 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + + I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ M+++ Sbjct: 1024 GHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMNDI 1083 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA 858 ++I F ++ ++ + ++ P VN F V D I + + A+KGVG I+ Sbjct: 1084 KQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTIVSNRD 1143 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDNIQK 910 + + S+ DF R + + +N++V ESLV++GA DCFG +R Q ++ + K Sbjct: 1144 EGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGIERLIK 1203 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y + N+ N ++F + +L + E+ V+ Y +GHP+D Sbjct: 1204 YTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITGHPMDD 1263 Query: 971 YKPILRKMGIKGYEESV-----------------------------------ATIRGNNI 995 Y+ L + A I+ ++ Sbjct: 1264 YRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKIKNKDL 1323 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + MV + T+ G G +TF + + YE F Sbjct: 1324 VVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALF 1360 >gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1156 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 399/1043 (38%), Positives = 598/1043 (57%), Gaps = 36/1043 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++P F+HL++HS YS+ +G + L++ + + A PA+A++D N+F ++F A + Sbjct: 1 MLEAP-FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G + I + ++LL + GY +L EL+SR YL + Sbjct: 60 KGIKPILGSDVCIANDGDPDRP----------YRLLLLCRSRPGYLQLCELLSRAYLAPR 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I L+E+G +GLI L+G ++G + A + ++A R ++K F Y+ Sbjct: 110 VRGRAEITRRMLEEVGVDGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYL 169 Query: 185 NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR+ + + LA LPLVAT+ FL +D++AH+ + +A ++ Sbjct: 170 EVQRYGQAQQEALVAATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDA 229 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T + Y K+ EM+++F DLPEAL N+VEIA+RC+ + + LP F Sbjct: 230 RRPRLHTEEQYFKSADEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGV- 288 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359 ++ LR +AVAGLE+RL Q + Y RL E + I +M F GYFLI Sbjct: 289 ---TLDDFLRQQAVAGLEIRLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLI 345 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N+ PVGPGRGSGAGSV AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD Sbjct: 346 VADFINWAKHNSCPVGPGRGSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFD 405 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD R VI YV+ KYG V+QI+TFG++ +KA +RDVGR L +PY+ D+L KLI Sbjct: 406 IDFCQDNRWRVIEYVRQKYGAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLI 465 Query: 480 PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 P + P+S +AIA + + + + V L ++ +LE L R+ HA G++I Sbjct: 466 PVETNKPLSLAKAIAAEPQLQARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 L+ P+Y V+QF+ +EK GL+KFDFLGL+ LT+++ +L ++ Q GV+ D Sbjct: 526 LTDFCPVY-SADGGSVVSQFDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPD 584 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ + FDD + Y +L T IFQ+ES GM++ + + PD EDIIA+++LYRPGP+ + Sbjct: 585 LATMAFDDPQAYQILKDGNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGS 644 Query: 658 IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + K +KI + L+ T GVI+YQEQVMQIAQ++ GY+L AD+LRR Sbjct: 645 GMVDDFILRKKGQQKIEYYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRR 704 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM ++ GA K G + +A+ +F+L+ KFA+YGFNKSH AAYAV++Y Sbjct: 705 AMGKKKAEEMALHRDLMREGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYH 764 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834 TAW+K H+ F+AA+++ +MD + +K F DA ++I+ P VN F D + Sbjct: 765 TAWLKAHHCAAFMAATLSSDMDVTDTVKIFHDDAINNGLRILGPDVNASEYRFMPVDRST 824 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + Y L A+KG G I++ A F L DFC RVD + +NRR +E+L+ AGA D Sbjct: 825 VRYGLGAVKGTGEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDS 884 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKFSVENSS 949 R +LL S+ + A+ E+N ++F + + + + + Sbjct: 885 LDSHRARLLASVGIAMEAAEQAERNAM--QVSLFDIFEAGGEEDREHGPQYVEVARWSER 942 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFYFSGHP + + + A LA +VV + K T Sbjct: 943 QKLNEEKLALGFYFSGHPFHSVQAEVSRFVRTRLAALEARKEVQ--WLAGLVVGVRSKLT 1000 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 +G + +V + + E + F Sbjct: 1001 ARGK-MVFVQLDDGSTSLEVSVF 1022 >gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7] gi|89518317|gb|EAS20973.1| DNA polymerase III [Flavobacteria bacterium BBFL7] Length = 1450 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 339/1078 (31%), Positives = 531/1078 (49%), Gaps = 71/1078 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ S+ +++ A + A+A+TD N+ A F + A Sbjct: 257 FAHLHSHSQFSILQSTASVQDLVKAAAVNDMSAVAMTDHANMMGAFHFVKAVKAHNASLV 316 Query: 67 -----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 ++P+IGC+ + N K+ IVLL GY + ++ Sbjct: 317 NDDDNELQKKPLKPVIGCEFFVCEDMN------DKSHKDNGYQIVLLAKNKNGYLNIAKM 370 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S+ Y +D RI +QE E +I+LTG G + AE+ LL +K Sbjct: 371 SSKAY-VDGFYYVPRIDKKLIQEF-KEDVIVLTGNMYGEVPSKILNIGENQAEEALLWWK 428 Query: 176 KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 + FGD LYV + RH D R ++ L+ H + +VATNN+ ++ +ED AHD+L+ V Sbjct: 429 EEFGDDLYVEIMRHGQEDEDRANEVLISLSRKHNVKMVATNNTYYIHKEDANAHDILLCV 488 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + + L N+ +++ ++ E S +L P Sbjct: 489 KDGEKQATPIGRGRGYRYGLPNQEYYYKSATEMKLLFKDLPEAILNISEVLDKIEPFELA 548 Query: 295 FIE---------------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 E D+ ++ E LR+ G + I G + + Sbjct: 549 RDVLLPKFDIPEQFLDAQDEHDNEKRGENAYLRHLTYEGAK-------IRYGEITPEIEE 601 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RLDFEL I + + GYFLI DFI+ A+ ++ VGPGRGS AGSV AY L IT++DP+ Sbjct: 602 RLDFELETIRKTGYPGYFLITWDFIKAARDMDVAVGPGRGSAAGSVVAYCLWITNVDPIH 661 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNPDR+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+++R Sbjct: 662 YDLLFERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSIR 721 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPA-------------HPVSLQAIADDSRFREARLADP 506 D RAL +P ++ D + KLIP+ + R Sbjct: 722 DTARALDLPLNEADHIAKLIPDFSKLKKIFALEDNEVRSKFRGEDADMVEELRGIAAGSD 781 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 L ++ LEG R+ HA G++I PL+ VP+ SDL VTQF+ + +E A Sbjct: 782 LAAETLRQARILEGSVRNTGVHACGVIITPAPLTNFVPVATAKNSDLYVTQFDNEVVESA 841 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGLKTL+ ++ ++ + +R D+ IP DD +TY L T+GIFQ ES Sbjct: 842 GLLKMDFLGLKTLSQIKDTVAIIKERHHIDLDIESIPLDDAKTYELFQEGKTVGIFQYES 901 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 +GM++ + ++P D+IA+ +LYRPGP++ I + +RK+G ++I ++ L ET Sbjct: 902 AGMQKYMRDLKPTQFADLIAMNALYRPGPLEYIPDFIDRKHGVKEISYDLDGMEEYLSET 961 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM ++Q L+ +S EADVLR+AMGKK + K K +F+ NG + I Sbjct: 962 YGITVYQEQVMLLSQKLANFSKGEADVLRKAMGKKQMATLQKMKPKFLDNGESNGHDREI 1021 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 +++ FA Y FNKSH+ YA I YQTA++K +YP EF+AA+++ M+ ++ + KF Sbjct: 1022 LEKVWKDWEAFASYAFNKSHSTCYAWIGYQTAYLKANYPAEFMAATLSNNMNQIKDVTKF 1081 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864 + + + ++ P VN F V + + + A+KG+G I+E D P+ S Sbjct: 1082 MDECKHMGLPVLGPDVNESNYKFTVNKHGAVRFGMGAVKGLGHGAVMTIIENRKDGPYKS 1141 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQKYAQWVE 916 + D R+D + N++ E+L +G D G +R Q L+ + KYAQ + Sbjct: 1142 IFDMAKRIDLRAANKKSFEALALSGGFDGLGGENRAQYFHQSDNGQIFLEQVVKYAQKYQ 1201 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +N + ++F + L + + + E+ V+G Y SGHPLD YK + Sbjct: 1202 ENENSAQVSLFGEASDVQIPEPELPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEME 1261 Query: 977 KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G ++ ++ Q + T+ G T + +E F Sbjct: 1262 FFCNTGLSSLKDLHGLVNRDLTFCGVISDVQHRITKTNKGWGMFTVEDYEDSFEFRLF 1319 >gi|302877644|ref|YP_003846208.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans ES-2] gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans ES-2] Length = 1204 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 403/1094 (36%), Positives = 589/1094 (53%), Gaps = 81/1094 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP FVHL++HS YS+ +G ++ +D AD PA+A+TD +N ++F +K Sbjct: 1 MP-SPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++P+ G + I + ++LL ++EGY RL L+SR YL +Q Sbjct: 60 KGLKPVAGVDVFITNE----------ADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQ 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ + W ++ GTEGLI L+G G + A + A + + LF DR Y+ Sbjct: 110 YRERAELRREWFKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYI 169 Query: 185 NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR D LA +LP+VAT+ FL+ D++AH+ + +A V++ K Sbjct: 170 EVQRAGFADEAAYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDK 229 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + T Y K ++EM +F+DLPEAL+N+VEIARRC+ L + P LP F + Sbjct: 230 RREKAFTAQQYFKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGES 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + +E + A Q Y +RL FE+N I +M F GYFLIVAD Sbjct: 290 LDDFMLSESERGLADRMAFLYPDEAERAEKFPQ-YHERLLFEINTIIKMGFPGYFLIVAD 348 Query: 363 FIQWAK-------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 FI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SM Sbjct: 349 FIRWAKAYRSDAFPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSM 408 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFD+DFCQD R+ VI YV+ KYG V+QI TFG++ +KA +RDVGR ++ PY DRL Sbjct: 409 PDFDVDFCQDGRELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRL 468 Query: 476 CKLIPNDPAHPVSLQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K IP + PVSLQ + ++ V LLE++ +LE L R+ HA G+VI Sbjct: 469 SKAIPLEGVKPVSLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVI 528 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---- 590 L+ P+Y V+QF+ +E GL+KFDFLGL+TLT++ ++ + Sbjct: 529 APGKLTDFCPLYCADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQA 588 Query: 591 ------------------------------------QRGVKVDLSLIPFDDHETYHLLTT 614 + IP DD +Y LL Sbjct: 589 RDRKGLPRTTNETTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKK 648 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIV 672 T +FQLES GM+ ++ +QPD EDI+ALV+L+RPGP+++ + + +RK+G+ Sbjct: 649 CNTTAVFQLESRGMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATAD 708 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 HP ++ LK T GVI+YQEQVMQI+Q++ GY+L AD+LRRAMGKK EM +Q++ F Sbjct: 709 YFHPELEASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIF 768 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 +SGA I K +A +F+L+ FA YGFNKSH+AAYA+++YQTA++K H+P F+AA++ Sbjct: 769 VSGALNREIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATL 828 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTAR 851 + ++DN EK++ F D Q I I+ P VN+ F + I Y L AIKG G Sbjct: 829 SGDLDNTEKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIA 888 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 I++A A PF L DFC RVD + +NRR +E+L+ AGA D R L+ S+D Sbjct: 889 SIVKARATGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALAS 948 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 A ++ R+ +++F + + + E+ LG Y GHP Y Sbjct: 949 AD--QQARSINQDSLFGEDDADAVLIEQKSDVPRWSLREQLAFEKVSLGIYLGGHPYQEY 1006 Query: 972 KPILRKMGIKGYEESVAT-------------IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 + L + RG +RLA +V + ++TR+G R+ + Sbjct: 1007 EKELTNFIKVRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVI 1065 Query: 1019 TFSEPAKEYEANFF 1032 T + + + E F Sbjct: 1066 TLDDGSAQIELTVF 1079 >gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN] gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN] Length = 1238 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 356/1114 (31%), Positives = 540/1114 (48%), Gaps = 95/1114 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 ++HL VH+ YS+L+G + ++DK + +AITD +F EFS Sbjct: 3 DYIHLHVHTHYSILDGQSKVPYLVDKAIKNGMKGMAITDHGVMFGIKEFSDYCASINKQR 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G +PI GC++ + + + + +++L GY+ LI+LVSR Sbjct: 63 KKNGEEPFKPIFGCEMYVARRRKEDKVKE--MHDNSGYHLIVLAKNYTGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ EGLI+ T +G + R + A++ + +KK+FG Sbjct: 121 W-VDGYYYRPRTDREDLEKYH-EGLIVSTACLAGEVPRNIMRGDIEGAKEAVQWYKKVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++QL + + TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPTLKANREAFPLQQKVNHVLLQLGKEFGVKCICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ ++ R R + + K R EM +F DLPE L NT+EI + F Sbjct: 239 AHDHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFQDLPEVLSNTIEILEKVEFYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAGLE 320 + PI+P F E ++E EE E K + G E Sbjct: 299 DNGPIMPFFPIPENFGTEEEWRKKFTEQQLYDEFTTDEHGENQLSPEEGEAVIKRLGGYE 358 Query: 321 VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A D + + FEL+V+ M F GYFLIV DFI Sbjct: 359 KMYRIKFEADYLAKLAHDGAKKLYGDPIPDDVEKAIIFELHVMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ N+ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 419 AARTELNVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+++V KYG E A IIT+ ++ K +++DV R +P + LCK IP Sbjct: 479 DGRGKVLQWVMEKYGPENCAHIITYSTMATKNSIKDVARVEGLPLDVSNNLCKAIPERLP 538 Query: 485 HPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AIA R +EA D ++ ++ LEG R HA G +I P+S Sbjct: 539 DGMKMNLKNAIACTPRLQEAEVSEDDRERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 + VP+ D P VTQ++ IE GLIK DFLGLKTL+ ++++ + Q Sbjct: 599 EWVPVSTATDPDFPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVIKQTTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 VD+ IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 IVDIDNIPIDDELTYQLYQKGQTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 719 MDYIPDFIKRKHDPSLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D+ K +F+ +NG I I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDQMKPKFLKQGQENGHDPKILEKIWTDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP EF+AA MT + +I K ++ + I + P VN + F V Sbjct: 839 QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSLKISTLGPDVNESMMGFGVNKKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+GT A I++ + P+ S+ DF R+D +NR+ ESL ++G D Sbjct: 899 EIRFGLSAIKGMGTGAAIAIVKEREKNGPYKSIYDFAERIDLSNVNRKAFESLAYSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 F R LD + +YAQ ++ + + ++F + + K Sbjct: 959 SFELQREDYFSVTSKGVMFLDALVRYAQLYQQEKASMQNSLFGGDDEVEIARPVAAKNER 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAA 999 S + E+ ++G Y S HPLD Y IL + + + I Sbjct: 1019 WPSIEKLNKERELVGIYLSAHPLDEYSVILNHLCNTHTEEIGRGADLAELSKREEISFGG 1078 Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 ++ + ++ + + G G+VT + E F Sbjct: 1079 IITAVNERFSQKTGKPFGFVTIEDFEGSGELALF 1112 >gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134] gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134] Length = 1175 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 413/1061 (38%), Positives = 612/1061 (57%), Gaps = 51/1061 (4%) Query: 5 LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + + +P FVHL+VHS YS+++G + L++ + A+D A+A+TD N F + F ++A Sbjct: 1 MSRMSAPRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++P++G + + +D+ ++LLV GY L L+SR +L Sbjct: 61 RGGGVKPVVGADVWLANEDDRDKPA----------RLLLLVQDRVGYLNLCTLLSRAWLT 110 Query: 123 DQGKQSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 +Q + I W +E G GLI L+G G + A + A + + Sbjct: 111 NQHRGRAEIEPGWFEEPGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAA 170 Query: 177 LFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +F R Y+ LQR H G D Y Q V LA +LP+VAT+ F++ +D+ AH+ + + Sbjct: 171 VFPQRFYIELQRAGHPGTDAYV-QQAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCI 229 Query: 235 AHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 A +++ R R T D Y K + EM ++F+D+P AL+N VEIARRC+ L++ P LP Sbjct: 230 AEGELLANPRRTRRFTTDQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLP 289 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350 F + + ++ L A GLE RL+ + +Y RL+FE I + Sbjct: 290 LFPTPDGMSL----DDYLVFMAKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIK 345 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP Sbjct: 346 MGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNP 405 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y Sbjct: 406 ERVSMPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYG 465 Query: 471 QVDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 VD + KLIP P V+++ ++ E + V +LLE++Q++EG+ R+ HA Sbjct: 466 FVDGIAKLIPFKPGKLVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHA 525 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 G++I L+ P+Y + V+Q++ +E AGL+KFDFLGL TLT+L + Sbjct: 526 GGVLIAPGRLTDFCPLYTQGGQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWA 585 Query: 586 LDFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + + S IP DD + +L T T+ +FQLES GM+ L+ +PD ED Sbjct: 586 ERYIRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFED 645 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 IIALV+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ Sbjct: 646 IIALVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQII 705 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 GYSL AD+LRRAMGKK EEM + + F GA KNG++ A +IF+L+ KFA YGFN Sbjct: 706 GGYSLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFN 765 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + I ++PP VN Sbjct: 766 KSHAAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVN 825 Query: 823 TPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881 F D I Y L IKG G I+ A ++PF L DFC RVD +++NRR Sbjct: 826 ASEYRFAPTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRT 885 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940 +E+L+ AGA D +R QLL S+ + A +K + ++F + + + L Sbjct: 886 IEALIRAGAFDSLNNNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGEAHRPEL 943 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNN 994 + E++ LG+YFSGH D + +R+ ++ G + Sbjct: 944 IDEPAWTPKRTLQEEKQALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGFGRD 1003 Query: 995 IR---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +R +A ++ + + T++G + V + E F Sbjct: 1004 VRGKTIAGVIAGVRTQMTQRGK-MIIVQLDDGTGVVEMTVF 1043 >gi|167750256|ref|ZP_02422383.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702] gi|167656818|gb|EDS00948.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702] Length = 1109 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 352/997 (35%), Positives = 550/997 (55%), Gaps = 21/997 (2%) Query: 39 DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98 Q A+A+TD ++ +++F + GI+ IIGC++ + + + + Sbjct: 1 MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDM---KPHH 57 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 +VLL EGY+ L +LV+ Y + R+ L+ ++GLI L+ SG + R Sbjct: 58 LVLLCKDNEGYKNLSKLVTLGYT-EGFYNKPRVDRELLRRY-SKGLICLSACISGELART 115 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217 A + ++++FG+ Y+ LQ H ++ R ++++A LVATN++ Sbjct: 116 LLDGRLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDA 175 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 ++ +ED VL +A +T + K+ + D + + + A +NTV+I Sbjct: 176 HYVEKEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKALGFPQSAYDNTVKI 235 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337 A +C+ ILP F + D+ E + GL R ++ Sbjct: 236 AEKCNVSFTFGHTILPFFKAEGYDNN----EIYFNAQVRKGLVKRYGDPV------PKEV 285 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 R ++E++VI +M F YFLIVADFI +AK+N I VGPGRGSGAGSV AY L ITDIDP Sbjct: 286 LDRAEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDIDP 345 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 +RF+LLFERFLNP+R++MPDFD+DFC RR EVI YV KYG + VAQIITFG++ A+ A Sbjct: 346 IRFNLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARGA 405 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 +RD GRA+ +PY +VD + KLIP + + + + +D V L+E ++K Sbjct: 406 IRDAGRAMGLPYGKVDTVAKLIPMSMHSTIDGA-LKSEKELVKLASSDSEVSLLIETAKK 464 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EG+ R+ S HAAGIVI P++ VP+Y++ +TQ+ M IE+ GL+K DFLGL+ Sbjct: 465 IEGMARNTSIHAAGIVITRDPVADYVPLYQNS-EGEVMTQYTMTAIERLGLLKMDFLGLR 523 Query: 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++Q + + D+ IP +D ETY ++++ GTLG+FQ ES+GM L M+P Sbjct: 524 YLTVIQDCCKLVVKSCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMKP 583 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 +ED+ A +SLYRPGP+D+I Y + EKI HPL+ +L T G I+YQEQVM Sbjct: 584 RSVEDLTAALSLYRPGPMDSIPTYLANRRNPEKIRYKHPLLKGILDVTYGCIVYQEQVMM 643 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I ++L+GYS AD++RRAM KK E M K++ F+ GA N + + +A IF+ + FA Sbjct: 644 ICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEIFDDMMSFA 703 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAAAY++++Y+TA+++ HY E++ A +T + K ++ D Q ++++ Sbjct: 704 SYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDLAQHGLKLL 763 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 PP VN F ++ I + L AIK VG I+E PF SL DFC R+ K + Sbjct: 764 PPHVNYSETGFSCENDGIRFGLLAIKNVGANMIADIIEERTKHPFKSLFDFCERMSDKNI 823 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 N+R LESL+ GA D G +R +++ SL+ + +++ ++ + Sbjct: 824 NKRALESLIKCGAFDGLGNNRREMMISLELMLDT--LSQRHDLEGQMSLMGEDDAADEGA 881 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR 996 ++ + + E+ +LG Y SGHP D + I R+ G + + N+R Sbjct: 882 FQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYRIARESGYENIGSILESNKDKQNVR 941 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + A++ S + T+ G +G++ + + E E FP Sbjct: 942 VTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFP 978 >gi|312196291|ref|YP_004016352.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c] gi|311227627|gb|ADP80482.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c] Length = 1178 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 358/1065 (33%), Positives = 562/1065 (52%), Gaps = 48/1065 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L ++ +++ Q PA+AITD ++ A +F ++A AAG+ Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKDMFTEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIGC+ I + L + + + + AEG L L S Sbjct: 62 KPIIGCEAYIAPESRLLKQRVRWGEPHQKSDDVSGSGSYTHMTIWARNAEGLHNLFRLNS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R + + R+ + E + GL+ TG SG + ++A K T++++ Sbjct: 122 RASIEGHYIKWPRMDREIISE-HSAGLMATTGCPSGEVQTRLRLGQPELALKAAATYQEI 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + + + H +R +V +A + V TN+S + E + E H L+ V Sbjct: 181 FGPENYFCEIMDHGIEIERRVRDGLVDIARKLNMRFVVTNDSHYTYESERETHSALLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 ++ V+ ++LK+ +M +I D +A + + + Sbjct: 241 TASTVANPSFQFEGSGYFLKSADQMRAI--DYSDAWREGCDTTLLIAERVDTTGMFPKHN 298 Query: 296 IEK-ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + EE+ R + + G+E R G + +R ++++E+ VI +M F Sbjct: 299 LMPVYPTPEGETEESFFRAEVLRGMERRFPGGID------EKHRTQVEYEIGVILQMGFP 352 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL L+FERFLNP+R+S Sbjct: 353 SYFLVVADFIMWAKNNGIAVGPGRGSAAGSLIAYALGITDLDPLPHGLIFERFLNPERVS 412 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DIDF RR +VIRYV K+G +R+AQI+T+G+++AKAA++D R L PY+ DR Sbjct: 413 MPDIDIDFDDRRRADVIRYVTEKWGEDRIAQIVTYGTIKAKAAIKDSARVLGYPYAVGDR 472 Query: 475 LCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 + K +P + ++ R +D V ++++ ++ LEGL R A Sbjct: 473 ITKAMPPMVMGKDIPLPGIFDPNHPRFSEAGEIRALYESDADVRKVIDTAKGLEGLIRQA 532 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 HAAG+++ P+ +P++R + +TQF+ E GL+K DFLGL+ LT++ + Sbjct: 533 GVHAAGVIMSAEPIIDHIPVWRRDADGVIITQFDYPTCENLGLLKMDFLGLRNLTVMDDA 592 Query: 586 LDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + + RG+K+DL + DD TY LL+ TLG+FQL+ +R L M+PD EDI Sbjct: 593 VRNVESNRGIKIDLLSLGLDDKTTYELLSRGDTLGVFQLDGGPLRSLLRLMRPDNFEDIS 652 Query: 645 ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQI 698 A+++LYRPGP+ ++ Y RKNG+++I+ IHP +D +L T G+I+YQEQVM I Sbjct: 653 AVIALYRPGPMGANSHTNYALRKNGQQEIIPIHPELGTALDEVLGTTYGLIVYQEQVMAI 712 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ++ GYSL +AD+LRRAMGKK KE +DK+ F +G NG S ++++L F+D Sbjct: 713 AQVVGGYSLGQADLLRRAMGKKKKEILDKEFAPFSAGMKANGYSDAAIKTLWDILVPFSD 772 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ I+++P Sbjct: 773 YAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIKVLP 832 Query: 819 PSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKK 876 P VN D+ G++ I LAAI+ VG I P+ S DF +V++ Sbjct: 833 PDVNISDADYTAHGESEIRVGLAAIRNVGINVVESITRTRRTKSPYTSFPDFLDKVEAVV 892 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N+R +ESL+ AGA D FG++R L++ + V+K ++FA Sbjct: 893 CNKRTIESLIKAGAFDSFGHTRRGLVEKHEQAVDAVMAVKKKTAEGQFDLFAFGGDDEDG 952 Query: 937 KI-TLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + +V NE+ +LG Y S HPL + +L V Sbjct: 953 SPLETPGLGVGEFSEKEWDKAVLLSNEREMLGLYVSDHPLSGVEHVLAAKADTTVANLVD 1012 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S Q+K T++G T + E FFP Sbjct: 1013 YPDGAVVTIGGIISSLQRKVTKQGKVWALTTIEDLEGGLEVMFFP 1057 >gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium HTCC2207] gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium HTCC2207] Length = 1132 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 396/1017 (38%), Positives = 581/1017 (57%), Gaps = 39/1017 (3%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+A+TD NN F+A++F + +GI+PI+G L + + Q +V Sbjct: 1 MPAVALTDFNNFFAAVKFYKATQGSGIKPILGTDLLVLDESGEGSPTQ----------LV 50 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LLV GY L +L+S+ Y Q + I SWL E ++GLI L+GG SG I A Sbjct: 51 LLVKDQTGYANLTKLISKAYQDGQRQGVPHIKKSWLGEF-SDGLIALSGGRSGEIGVALV 109 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 N A L F LFGDR Y+ LQR + V LA + P+VATN+ F Sbjct: 110 SNRLDDAATALEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRF 169 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 +S++++EAH+ + + + R R + YL++ EMV +FSD+PEALEN+VEIA Sbjct: 170 ISKDEFEAHEARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIA 229 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 RRCS +++ LP + E I + E + LEV A + Y Sbjct: 230 RRCSIDIRLGEYFLPDYPIPEGMTINEFFTLESKKGLQNRLEVLYDTSAPDFPEIQKRYM 289 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+FEL +I +M+F GYFLIV DFI WAK N IPVGPGRGSGAGS+ AY+L ITD+DPL Sbjct: 290 ERLEFELKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDLDPL 349 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + LLFERFLNP+R+SMPDFDIDFC + RD VI YV +YG + V+QI+TFG++ AKA + Sbjct: 350 EYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAKAVV 409 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 RDV R Y D+L KLIP + + +A+ + ++ D + ++ +L Sbjct: 410 RDVARVQGKSYGLADKLSKLIPFEVGMTLE-KAVEQEETLKQFLDEDDEAGEIWGMALQL 468 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EG+ R+ HA G+VI ++ P+Y D VTQF+ +E AGL+KFDFLGL+T Sbjct: 469 EGVARNCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLGLRT 528 Query: 579 LTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 LT++ ++ + + ++ IP DD TY L+ T +FQLES GM++ ++ Sbjct: 529 LTIIDWAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKELIK 588 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQ 686 + PD EDIIALV+L+RPGP+ + +V + K H + P L+ T Sbjct: 589 KLGPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALEPTY 648 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQVMQIAQ + GY+L AD+LRRAMGKK +EM KQ+E F+ GA G +K +A Sbjct: 649 GIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTKELA 708 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 NIF+L+ KFA YGFNKSH+AAYA+++YQTAW+K HYP +F+AA+++ +MD +K+ F Sbjct: 709 SNIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVVTFI 768 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864 + R N++++PP VN F V NR+ Y L AIKG+G +I+ A PF Sbjct: 769 DECRAMNLELLPPDVNGGQFHFSVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGGPFKD 828 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALD------CFGYSRMQLLQSLDNIQKYAQWVEKN 918 L DFC+RVD +K+N+R +E+L+ +GA D GY R +L ++D K A+ +N Sbjct: 829 LFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQHARN 888 Query: 919 RTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 ++ ++F + E + + + + R E+ LG Y +GHP+D Y+ L Sbjct: 889 TSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPIDEYEEEL 948 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +KM + ++ M+++ + K ++G ++T + + E + F Sbjct: 949 QKMHPNRISKLRPAKV--LATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELSIF 1003 >gi|320011307|gb|ADW06157.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC 33331] Length = 1179 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 335/1068 (31%), Positives = 535/1068 (50%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFEACNDMGMSHIAMTDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + + G L + Sbjct: 60 AGVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A + + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178 Query: 175 KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ R ++ L H +R ++++ ++P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLDIPPLVTNDSHYTYANEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + AG+ R G +D +++ ++E+++I +M Sbjct: 298 KRDLMPKFDIPEGFTEITWFQEEVRAGMGRRYPGGV------PEDRQKQAEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVRKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +GV +++ +P DD +TY LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKANKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN +++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYAERKNARQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIVAGYSLGEADILRRVMGKKKADELAKNFVLFEAGAKKNGFSDAAIKALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG+ I+ + + DF +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLTAVRNVGSNVVDSIIRCRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGMGDE 951 Query: 934 FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 SD+ S E+ +LG Y S HPL + +L + Sbjct: 952 SSDEPGFGLDVEFSDI-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|116332230|ref|YP_801948.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125919|gb|ABJ77190.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1147 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 364/1012 (35%), Positives = 571/1012 (56%), Gaps = 28/1012 (2%) Query: 33 LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92 + + + ++A+TD N+F A+EF +A GI+PIIG + + + + T K Sbjct: 1 MQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPIIGSEFYVSP-NRKQETEMVKIA 59 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 + ++LL EGY+ LI L S+ Y + + RI L + GL+ LT + Sbjct: 60 DGSAYHLILLAKNEEGYKNLIRLSSKSYT-EGFYKKARIDYDLLAQ-HNGGLVCLTACLA 117 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELP 210 G ++R + + ++F + Y+ +Q H ++ Q+ +P Sbjct: 118 GEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIP 177 Query: 211 LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270 LV TN+S FL ++D EA D+L+ + ++ + Y+K+ EM +F ++PEA Sbjct: 178 LVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKSPDEMARVFPEIPEA 237 Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330 NT+EI+ + LQ +LP F E D ++ L G+ + Sbjct: 238 FYNTLEISNKVDLKLQFGNYLLPEFEVPEGYD----ADSYLEKLIWEGIGRKYPN----- 288 Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 + + + R+ FELN I MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL Sbjct: 289 --LSPEIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYAL 346 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 IT+++PL+ +LLFERFLNPDR MPD D DFC +RR+EVI Y++ +YG E+V QIITF Sbjct: 347 GITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFN 406 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510 SL AKAAL+DV R L +P+ + + + K PN + +A+ S + D + Sbjct: 407 SLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSI-AEALTTSSELKNFSEKDDINHK 465 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEK 565 + I+Q+LEG YR HAAG+VI PL ++VP+ + P VTQ++ +E Sbjct: 466 IFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKERPGSRSIVTQYDKNNLES 525 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK D LGLK LT L ++ + +R V++DL IP++D TY LL TLGIFQLE Sbjct: 526 IGLIKMDILGLKNLTTLDYAIKLIERRRGVRIDLDEIPYNDANTYALLRKANTLGIFQLE 585 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682 S+G+ + Q + ++I+AL++LYRPGP+ + Y +RK+G++++ HP +P+L Sbjct: 586 STGITDLVAKSQVNNFDEIVALIALYRPGPMGEGMLDEYLDRKSGRKQVTYPHPSCEPIL 645 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 KET GV +YQEQVM I++++ G+S+ ++DVLR+AM KK + M+K K +F+ GA K GI Sbjct: 646 KETFGVPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQ 705 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 + +A + FE L +F YGFNKSH+ AYA+I+YQTA++K +Y +E+L A + + I Sbjct: 706 EKVAKDFFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDI 765 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADK 860 K+ +AR+ I+I+ P V+ F V D+ I + L+A+KGVG T A I+EA Sbjct: 766 VKYINNAREMGIRILNPDVSESQASFNVIDDATIRFGLSAMKGVGETAANSIIEARDKAG 825 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 F +L+DF +D++ +N++V E+L+ AGALD FGY+R L +S+D+I +AQ ++ Sbjct: 826 NFKTLQDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQREQERTN 885 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 ++F + +F+ + + + E+ + G Y SGHPLD Y+ L+ + Sbjct: 886 EGQFSLFGVGESSFTLNLPKDAL-EWEIDEKLRREKAIAGLYLSGHPLDKYEKQLKSLRT 944 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E+ G+ + +A ++ SK K +++ + E E F Sbjct: 945 IPIEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 996 >gi|189485028|ref|YP_001955969.1| DNA polymerase III subunit alpha [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286987|dbj|BAG13508.1| DNA polymerase III subunit alpha [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1174 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 375/1061 (35%), Positives = 588/1061 (55%), Gaps = 52/1061 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALS-------LNNILDK-IAADQQPAIAITDTNNLFSALEFS 59 + FVHL H+ YSLL+GA + + + PA+AITD N++ A+EF Sbjct: 2 AAEFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFY 61 Query: 60 QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP--TVPSIVLLVSTAEGYQRLIELVS 117 A +GI+PIIGC++ + + N + + LL EGYQ L+ +VS Sbjct: 62 LAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + + R+ L++ GLI L+G +G + A + + A+ + ++ + Sbjct: 122 AGFT-EGFYYKPRVDKEVLKKY-RCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDI 179 Query: 178 F-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 F D Y+ + + + +++L+ + +PLVATN+ FL +ED E HD+L+ + Sbjct: 180 FDKDNFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCIG 239 Query: 236 HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++++ R + Y ++ +M+ FS +PEA++NT+EIA + + + +LP+ Sbjct: 240 TGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLPQ 299 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 F + K + L GL A ++ +RL EL+VI +M F+ Sbjct: 300 FPIPK---EYKSDSEYLETLCRRGL-------AARYDTIKPEHEERLKHELSVINKMGFA 349 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIV+DFI++AK + IPVGPGRGSG+G++ AY L ITDI PL++ LLFERFLNPDR S Sbjct: 350 SYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRRS 409 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DIDF RDEVI+YV+ KYG E+ AQIITFGS+Q++ ++DV R + ++ + Sbjct: 410 MPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESNN 469 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + KLIP + + +A+ + + AD + +L+ SQKLEGL RH HAAG+VI Sbjct: 470 IAKLIPQNASI---AEALQASTDLSKLVKADEKIAKLIAASQKLEGLKRHTGVHAAGMVI 526 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 ++ ++ P+ + D+ TQ++ + + GL+K DFLGLKTLT++ + F+ ++ Sbjct: 527 ANKEITSYSPLAKGS-KDIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFIREKNP 585 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +L IP DD +TY LL T+GIFQLES GMR ++ ++P I+DIIAL++LYRPGP Sbjct: 586 SFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIALYRPGP 645 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 + + + + NRK+G+ KIV HPL + +LK+T GVI+YQEQVM+++ L+G++ EAD Sbjct: 646 MGSGMLDNFVNRKHGRTKIVYDHPLQESILKDTYGVILYQEQVMKMSVALAGFTPGEADS 705 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AM KKI E ++KQ+E+F+ G + G++K I+ IF + F YGFNKSH+AAY +I Sbjct: 706 LRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHSAAYGII 765 Query: 773 SYQTAWMKTHYPVEFLAASMTLE-------MDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 SY+TA++K +YP+E++ A E + K+ + DA F+I+++PP V Sbjct: 766 SYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPPDVQYSD 825 Query: 826 VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK---PFDSLEDFCSRVDSKKLNRRV 881 FK D I + + A+K VG I ++ + F DF R+D K +N++ Sbjct: 826 GKFKTEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDLKSINKKA 885 Query: 882 LESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 LESL+ AG D FG R +L+Q++D+ A V++ R + +F + K D Sbjct: 886 LESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNVKTITDDI 945 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEESVATIRGNN 994 ++L++ E+ VLGFY SGHPL K + + + Sbjct: 946 LSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDKLPQLKENADRKT 1005 Query: 995 IRLAAMVVSKQ--QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+A M+VS + TRK + A FP Sbjct: 1006 VRIAGMIVSVKKLTSTTRK-EPYARFKIEDLHGNVNALLFP 1045 >gi|302526214|ref|ZP_07278556.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302435109|gb|EFL06925.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1174 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 332/1066 (31%), Positives = 528/1066 (49%), Gaps = 51/1066 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q + GI+ Sbjct: 2 PSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQR 111 PIIG + + + + + ++ A G + Sbjct: 62 PIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRN 121 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S + + R+ + E EG+I TG SG + + A + Sbjct: 122 LFKLSSLASIQG-YYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQAA 179 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +K +FG Y+ L H +R ++++ +LP +ATN+S +++++ + H Sbjct: 180 SDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHS 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V ++ R + D Y ++ + + D + Sbjct: 240 ALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYEDV 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + E L ++ ++GLE RL G +YR+R ++EL VI Sbjct: 300 YAHKDRMPVFDVPEGHTEATWLHHEVMSGLEHRLPDGV------PDEYRERAEYELEVIV 353 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F GYFLI AD + A++ I VGPGRGS AGS+ AYAL IT++DP+R LLFERFLN Sbjct: 354 EKGFPGYFLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLFERFLN 413 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R+SMPD D+DF RR E+IRY KYG +R+AQ+ITFG+++ KAA++D R Q Sbjct: 414 PERVSMPDIDMDFDDRRRGEMIRYATEKYGSDRIAQVITFGTIKTKAAIKDSARVHFGQP 473 Query: 468 PYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKL 518 Y+ DR+ K +P A + A+ + R D + E ++ L Sbjct: 474 GYAIADRISKALPPPVAAKDIPLSGIVDAKHERYAEAAEVRALVETDEECKTIFETARGL 533 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL +P++R +T ++ E GL+K DFLGL+ Sbjct: 534 EGLIRNAGVHACAVIMSSEPLLNAIPLWRRD-DGSIITGWDYPSCEAIGLLKMDFLGLRN 592 Query: 579 LTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++D A RG +DL + DD ET+ LL +LG+FQL+ MR L M+P Sbjct: 593 LTVIGDAIDNIQANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLLRRMRP 652 Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691 EDI+A+ +LYRPGP+ Y +RKN ++ I IHP ++ L ET G+++Y Sbjct: 653 TGFEDIVAVNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETHGLVVY 712 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+MQIAQ ++GYS+ ADVLRRAMGKK KE ++K+ E F +G NG S +++ Sbjct: 713 QEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSAEAVQALWD 772 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA YA++ Y TA++K +Y E++AA +T DN +K + + R+ Sbjct: 773 TILPFAGYAFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYLSECRR 832 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 I+++PP VN + F N I + L A++ VG I++ + + S DF Sbjct: 833 LGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSFTDFLD 892 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 + + N+RV+ESL+ AGA D G++R+ ++Q ++ + +++ ++F E Sbjct: 893 KSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGGE 952 Query: 931 KGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + E+ +LG Y S HPLD + +LRK + + Sbjct: 953 SEEPASSPLAHVKFTAEEWPRKQLLAQERDMLGLYVSAHPLDGAEGVLRKHAPRPIAAII 1012 Query: 988 ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A ++ S +++ +KG T + E FF Sbjct: 1013 DNPPKEGELVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFF 1058 >gi|295394749|ref|ZP_06804964.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972345|gb|EFG48205.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 1178 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 352/1064 (33%), Positives = 540/1064 (50%), Gaps = 46/1064 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + FVHL VH+ YS+L+GA L +++ A+A TD LF A +F +A AGI Sbjct: 2 ADDFVHLHVHTEYSMLDGAARLGDLMAATNELGMRALATTDHGYLFGAFDFWNQATKAGI 61 Query: 68 QPIIGCQLDIDMQ------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +PIIG + + + + + + LL G Q L + Sbjct: 62 KPIIGVEAYVTPGTARNDKTVVKWRTDESQRSDDVSGGGRYTHMTLLSRNNRGMQNLFKA 121 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L R+ LQ + GLI TG SG + + A K ++ Sbjct: 122 SSLASLDSALGNRPRLDRELLQNY-SNGLIATTGCPSGEVQTRLRLGQYEEARKAAGEYR 180 Query: 176 KLFGDRLYV-NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG Y L H +R +++LA LPLVATN+ + E D AH+ L+A Sbjct: 181 EIFGADYYFCELMDHGLEIERRVTKDLLRLAKELNLPLVATNDLHYTHESDATAHEALLA 240 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + + + + + + +++ + E I + Sbjct: 241 LQSGSKLLEPTYEQGGSRFAFSGTGYYLKSPAEMRHLFKELPEACDNTLKIADMCEVSFD 300 Query: 294 ---RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++ K ++E + L + GL R QG + R++ D+EL++I + Sbjct: 301 TSANYMPKFPTPEGEDETSWLIKEVDKGLHYRYPQG------IPDEVRKQADYELDIIIK 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNP Sbjct: 355 MGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DF RR EVI YV KYG E VA I+T+G+++ K AL+D R L P+S Sbjct: 415 ERVSMPDFDVDFDDRRRSEVIDYVTQKYGSEYVAMIVTYGTIKTKQALKDAARVLGHPFS 474 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEISQKLEGL 521 + L K +P ++ FR + + E ++ LEGL Sbjct: 475 MGEELTKALPPAAMAKDIPLTDIENPEAPRYNEAGDFRNLLATNEQAREVFETARGLEGL 534 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFLGL+ LT+ Sbjct: 535 KRQWGVHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNLTI 594 Query: 582 LQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L+ R V++DL + DD +TY LL TLG+FQL+ G++ L MQPD Sbjct: 595 ISDALENIQRNRDVEIDLERLELDDEDTYKLLARGDTLGVFQLDGGGLQGLLRLMQPDNF 654 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 EDI A ++LYRPGP+ D+ Y RKNG ++I IHP + L T G+IIYQEQ Sbjct: 655 EDISATLALYRPGPMGADSHTNYAKRKNGLQEITPIHPELAEPLKEILDTTYGLIIYQEQ 714 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+ F G + G S+ A ++++L Sbjct: 715 VMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQQVGFFGGMKERGYSEEAAQALWDILL 774 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T DN +K+ + + R+ +I Sbjct: 775 PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDNKDKLAVYLGECRKMHI 834 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 ++PP VN ++F N I + + A++ VG I+E+ F S DF +V Sbjct: 835 TVLPPDVNESELNFTPVGNDIRFGMGAVRNVGHNVVDGIVESRTEKGAFTSFSDFLDKVP 894 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 S N+R +ESL+ +GA D G++R L++ + V++ ++FA G Sbjct: 895 SHVCNKRTVESLIKSGAFDSLGHTRRALVEIHEEAVDSVVGVKRQEAAGQFDLFAGLGGD 954 Query: 934 FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-- 989 + + + + + E+ ++G Y S HPL+ + ++ + ++ Sbjct: 955 DAASFSVPIPDRVEWDKKEKLAFEREMIGLYVSDHPLNGLEGVIASESDLPLVDLISQGR 1014 Query: 990 IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 G+ I + M+ S ++ ++ G VT + E FF Sbjct: 1015 SEGSTITVCGMITSLVRRVSKNSGRPYAIVTIEDLEASIEVLFF 1058 >gi|302550775|ref|ZP_07303117.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces viridochromogenes DSM 40736] gi|302468393|gb|EFL31486.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces viridochromogenes DSM 40736] Length = 1179 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 530/1067 (49%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + R + ++ Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + R + + G+ R G D +++++E++ I M Sbjct: 298 KRDLMPKFDIPEGYTEVSWFREETLRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY+ Sbjct: 412 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGINLDGITNPEHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ ++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKSNKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLREVLDVTHGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP VN +F GD+ I + L+A++ VGT I+ + S D+ +V+ Sbjct: 832 VLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDAMGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMGED 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S + + + E+ +LG Y S HPL + IL G + Sbjct: 952 ESSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKADAGISQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GDYSDGSVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica PHL213] gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica PHL213] Length = 1142 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 404/1031 (39%), Positives = 589/1031 (57%), Gaps = 38/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ AA+ A+ +TD N ++F +A AGI+PIIG + + + Sbjct: 1 MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYVRTES 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + LL +GY + +++S+ Y + + WL E+ Sbjct: 61 G----------NEDYFELTLLAKNNKGYHNITQILSKAYQQGYV-EFPMVEREWLAEL-N 108 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200 EG+I+L+GG G + +A + Q AE++L +++ + + Y+++ R D R Q Sbjct: 109 EGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ +P Y + E Sbjct: 169 VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+DLP AL NTVEIA+RCS +++ + E+ L K+ GL Sbjct: 229 MCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELSTEDFLVKKSKEGL 283 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVGP Sbjct: 284 EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 344 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + +A A + Sbjct: 404 TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 463 KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + IP DD +++ L Sbjct: 523 HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFAL 582 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670 L T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N K Sbjct: 583 LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642 Query: 671 ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EE Sbjct: 643 EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 703 MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT EMDN +KI F + + ++PP VN+ F V + I Y L AIK Sbjct: 763 AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+ A + F L D +RVD KK+NRR ESL+ +GA D G R L+ Sbjct: 823 GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 ++L++ K + K ++F T + + + V + E+ LG Sbjct: 883 KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y SGHP+ + L E T RG ++ +V++ + T++GSRIG T Sbjct: 943 YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002 Query: 1022 EPAKEYEANFF 1032 + + + + F Sbjct: 1003 DRSGKLDITLF 1013 >gi|302533930|ref|ZP_07286272.1| DNA polymerase III subunit alpha [Streptomyces sp. C] gi|302442825|gb|EFL14641.1| DNA polymerase III subunit alpha [Streptomyces sp. C] Length = 1180 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 340/1069 (31%), Positives = 535/1069 (50%), Gaps = 50/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P F HL VH+ YSLL+GA L ++ IA++D NL A +F A Sbjct: 1 MTKTP-FTHLHVHTQYSLLDGAARLKDMFAACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI PIIG + + + + + + A G L Sbjct: 60 AGITPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y + R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAIKAASDY 178 Query: 175 KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ R ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGSGYYLK-STEEMYAIDSSDAWQEGCANTWKVAEQVDTEGMFK 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E R + + G+ R G +D +++++E++ I M Sbjct: 298 FRNLMPKFDIPDGYTEVTWFREETMRGMHRRFPGG------IPEDRMKQVEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D P+ S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIPLSGILDPSHPRYSEAGEIRGMYENEPDVKKVIDTARGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ ++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSERITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGIDIDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN ++ I IHP ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNKQQDITPIHPELEKPLEEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDQAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I++ + S DF +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIKTRKSKGKYSSFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R +ESL+ AGA D G++R L+ +++ V++ ++F Sbjct: 892 AVVCNKRTVESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQFDLFGGMGDE 951 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F + S E+ +LG Y S HPL + +L G + Sbjct: 952 DGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQL 1010 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059 >gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002] gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002] Length = 1147 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 379/1039 (36%), Positives = 568/1039 (54%), Gaps = 32/1039 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL++HS +S+ +G + L++ + + PAI ++D NLF ++F + G Sbjct: 2 NPPRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+ I D+ ++L GY RL +L+++ L +Q + Sbjct: 62 IKPIVSVDALISNDDDRDKP----------SRLLLTAKNRAGYLRLCDLLTQAVLHNQYR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + WL+ LI L+G G + A VAE+R + LF D Y+ + Sbjct: 112 GRAELKREWLENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEV 171 Query: 187 QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR Q + LA LP+VAT+ F+ +D++AH+ + +A + K R Sbjct: 172 QRLDNPQIEGVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRR 231 Query: 246 PRVTPDHYLK-NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 P+ + + EM+ F D+PEALEN+VEIARRC+ +Q+ LP F E Sbjct: 232 PKNFAECQYFLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGM--- 288 Query: 305 KEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L + + GLE +L + Y RL E + I +M F GYFLIVA Sbjct: 289 -TLDDYLVHLSKEGLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK N PVGPGRGSGAGS+ A++L ITDIDPL ++LLFERFLNP+R+SMPDFD+D Sbjct: 348 DFIVWAKNNGCPVGPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVD 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY D + KLIP Sbjct: 408 FCQDNRYRVIEYVRQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPA 467 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P S A+ + +E + + L E+++KLEGL R HA G++I ++ Sbjct: 468 APGKQYSLDDAVEMEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKIT 527 Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVD 597 P+Y+ D +PV+ + +E+ GL+KFDFLGL+ LT++ ++ ++ D Sbjct: 528 DFCPVYQAAGDDAVPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDTD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+L+ F D Y +L T +FQLES GM++ LE ++PD EDIIA+++LYRPGP+ + Sbjct: 588 LNLLEFTDPAAYQILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGS 647 Query: 658 IVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + K+++ HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD+LRR Sbjct: 648 GMVDDFILRKAGKQEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM + + + GA+ G +A +F+L+AKFA+YGFNKSH AAYAV+SYQ Sbjct: 708 AMGKKKPEEMAEHRGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834 TAW+K H+ F+AA+M+ E+DN +++K F D+ ++ +PP VN F D Sbjct: 768 TAWLKAHHCAAFMAATMSSELDNTDQLKVFYDDSIANKLKFLPPDVNESFYRFVPVDRQH 827 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L A+KG G HI+ PF L DFC R D + +N+R +ESL+ AGA D Sbjct: 828 IRYALGAVKGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDA 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R +L ++ + A+ N +F + + + + +V+ Sbjct: 888 IEPNRAKLFANVGLAMEAAEQEAANANQG--GLFDMFDADSAPTVEMVEVKPWPPAVQLA 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ +G+Y SGHP Y+ +R T R +A V + K +G Sbjct: 946 EEKLAIGYYLSGHPFSAYEKEVRGFIKTPLSRI--TPRKEPQLIAGFVTGLRTKVGNRGK 1003 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + ++ + + + E + F Sbjct: 1004 -MAFIQLDDGSAKREVSVF 1021 >gi|291302505|ref|YP_003513783.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM 44728] gi|290571725|gb|ADD44690.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM 44728] Length = 1179 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 343/1069 (32%), Positives = 547/1069 (51%), Gaps = 53/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K FVHL VH+ YS+L+GA + + ++ +IA+TD N++ A EF Q+A Sbjct: 1 MSK--DFVHLHVHTEYSMLDGAAKMRPMFAEVERLGMSSIAMTDHGNMYGAYEFYQEAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + + D + + + + G + L++ Sbjct: 59 TGIKPIIGIEAYLAPGDRAHKKPVRWGRPDQKSDDVSGGGAYTHMTMWAANGSGLRNLLK 118 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q Q R+ L + EG+I TG SG + + A + Sbjct: 119 LSSLASFEGQ-YQKPRMDAELLSKY-AEGIIATTGCPSGEVQTRLRLDQPDEALAAAAKY 176 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG D ++ L H + ++ ++ LPL+ATN+S ++ + D + H L+ Sbjct: 177 QDIFGKDNFFLELMDHGLDIETRVREGLLDISKKLGLPLLATNDSHYVHQHDSDNHAALL 236 Query: 233 AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 V ++ +R + D +Y+K+ +EM ++S+LPEA +NT+ IA R +V A + Sbjct: 237 CVQSGKTLTDPNRFAFSGDGYYIKSPAEMRELWSELPEACDNTLLIAERIESYEEVFAEV 296 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + E+ LR R G Q+Y+ R+D EL V++ M Sbjct: 297 DRMPRFPLKEG--ETEDILLRRDVEKYTPNRFPDGL------TQEYKDRIDRELGVMSAM 348 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 FSGYFL+V D ++WAK IP GPGRGS GS+ AY L ITD+DP+ SL+FERFLNP+ Sbjct: 349 GFSGYFLVVGDLVRWAKSQKIPTGPGRGSATGSLVAYILQITDLDPIEHSLIFERFLNPE 408 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469 R+S PD D+DF + RR EV++Y K+G E VAQ+ITFG+++ KAAL+D RA Q + Sbjct: 409 RVSPPDIDLDFDERRRGEVMQYTVEKWGEENVAQVITFGTIKTKAALKDAARAHLGQPGF 468 Query: 470 SQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 + +R+ K +P A + + + + R +P V ++ + ++ LEG Sbjct: 469 AVAERIAKALPPPVAAQDIPLSGIVDPNHERYNEAAEVRALVENEPEVKQIFDTARGLEG 528 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA ++I PL VP++ +T ++ E GL+K DFLGL+ LT Sbjct: 529 LIRNAGVHACAVIISSVPLLGQVPLWMRP-DGSVITGWDYPSCEAMGLLKMDFLGLRNLT 587 Query: 581 LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++D + + I DD +T+ LL + G+FQ E +GM+ L+ MQP Sbjct: 588 VIGDAIDNVKRNHGVELSTETITLDDPKTFELLCRGESAGVFQFEGAGMQDLLKRMQPKK 647 Query: 640 IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693 DI A+ +LYRPGP+ + + Y R NG++ IHP ++P+L ET +++YQE Sbjct: 648 FGDIAAISALYRPGPMAANAHLNYAERANGRQSPEPIHPELKDALEPILGETFHLLVYQE 707 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ E+F +G + NG S +++++ Sbjct: 708 QVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFSNGMTANGYSMEACQTLWDVM 767 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH A Y +++Y TA++K +YP E++AA +T DN +K + D R+ Sbjct: 768 LPFAGYAFNKSHTAGYGLVTYWTAYLKANYPAEYMAALLTSVGDNKDKSALYLADCRKLG 827 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872 I+++PP VN +F I + L AI+ VGT I+ A ++S DF + Sbjct: 828 IKVLPPDVNESRRNFSAVGGDIRFGLGAIRNVGTGVVDSIVATREAKGNYESFSDFLQKS 887 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + N+RV+ESL+ AGA D +SR L + + + + V++ ++F Sbjct: 888 ELPVCNKRVIESLIKAGAFDSLKHSRKALCERHEVLVESIVGVKRKEAEGQFDLFGGMLT 947 Query: 933 TFSDKITLEK------FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 E E+ +LG Y SGHPL+ + ILRK + Sbjct: 948 PDQPDAATPGGDTDFSGDDWPRKTTLEFEREMLGLYVSGHPLEGAEMILRKNSENRIADL 1007 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G ++ +A ++ S +++ T++G T + E FFP Sbjct: 1008 LTSDIPDGTSVTIAGIISSLERRVTKQGKPWAKATVEDLDAAIECLFFP 1056 >gi|50842630|ref|YP_055857.1| DNA polymerase III subunit alpha [Propionibacterium acnes KPA171202] gi|50840232|gb|AAT82899.1| DNA polymerase III alpha subunit [Propionibacterium acnes KPA171202] Length = 1220 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 333/1073 (31%), Positives = 536/1073 (49%), Gaps = 58/1073 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66 FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 34 SDFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGD 93 Query: 67 ----IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVLLVST 105 ++PIIG + + D + + + + Sbjct: 94 QNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKD 153 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 +EG L L S + R+ + + G+I TG SG + + Sbjct: 154 SEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRLGQFE 211 Query: 166 VAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223 A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S +++E+ Sbjct: 212 EACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYVTED 271 Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 272 QADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLTEMIG 331 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 +V + + + +E+ LR K GL+ + ++ +RL+ Sbjct: 332 SYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVLERLE 383 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL L Sbjct: 384 TELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHGL 443 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA++D Sbjct: 444 LFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAVKDAN 503 Query: 463 RALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLE 513 R L P++ D++ K +P D V L I D S FR+ +P V +++E Sbjct: 504 RILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVAKVVE 563 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+K DF Sbjct: 564 TAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDF 623 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + MR L Sbjct: 624 LGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAMRSLL 683 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686 M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L T Sbjct: 684 RLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPTY 743 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 744 HLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDAI 803 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ + Sbjct: 804 QTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMYL 863 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 864 ADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPDF 923 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N ++ Sbjct: 924 FTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQANGQDD 983 Query: 926 IFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 +F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 984 LFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDIS 1043 Query: 983 YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1044 VAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1096 >gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 1140 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 459/1033 (44%), Positives = 635/1033 (61%), Gaps = 26/1033 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F+HL + SS+SLLE ++ ++ PA+A+TD N LF ALE S K Sbjct: 1 MTK-PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+ C D+ P + + GY+RL+ L SR YL + Sbjct: 60 YGVQPIMACCFDVTDGS----------PKAELFRLTAYAQDDVGYKRLMFLSSRAYL-EA 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ +L E TEGLI+LTGG+ G + R A L T + R YV Sbjct: 109 DDGVPRLHKKYLLE-NTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYV 167 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + RH + + E+ +V+LAY LPLVAT+++ FL ED AHD +M +A+ + Q Sbjct: 168 EITRHGTQEEIKSETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQD 227 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RV PD YLK+ EM +F+DLPEA+ NT EIA RCS + + I Sbjct: 228 DRKRVEPDQYLKSPEEMEVLFADLPEAIANTSEIAIRCSVRAET-----RKPILPNFSKE 282 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E EL +A GLE RLA+ Q Y RL++EL +I RM F GYFLIV+DF Sbjct: 283 GRSEGEELALQARQGLEERLAEADRLYAE-RQVYLDRLEYELGIIDRMGFPGYFLIVSDF 341 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N IPVGPGRGSGAGS+ A+ L ITD+DPLRF LLFERFLNP+R+SMPDFD+DFC Sbjct: 342 IKWAKANGIPVGPGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFC 401 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 Q+RR EVIRYV+ KYG + VA IITFG+LQAKA +RDVGR +QMPY QVDRL KLIP +P Sbjct: 402 QERRGEVIRYVREKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNP 461 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P + +AIA + +F + AD V L++ ++ LEG+YR+A THAAG+VI DRPL +L Sbjct: 462 AKPPTLDEAIAAEPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVEL 521 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+Y D R+DLP TQFNMK+ E AGL+KFDFLGLKTLT++ ++L+F+ + G V + Sbjct: 522 VPLYNDPRADLPATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRS 581 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY L+ + TLG+FQLE +GMR L ++P+ IED+IA++SLYRPGP++NI VY Sbjct: 582 MDDPATYELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYV 641 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 K + HP + P+L+ T GV +YQEQVM++AQ ++GYSL EAD+LRRAMGKK Sbjct: 642 QGKEDPASVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKL 701 Query: 723 EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EEM Q+ RF+ A+ G+ ++A IF+ + KFA YGFNKSHAAAYA+I Y TA++K Sbjct: 702 EEMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKC 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP EFLAASM+L++ N +K+ F Q+A++ + ++ P +N+ DF V ++ I Y+L A Sbjct: 762 HYPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGA 821 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKGVG +H+ PF L DF RVD K +N++ LESL +GALDC +R + Sbjct: 822 IKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRAR 881 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + + +Y ++R+ +F + + + + + E + +G Sbjct: 882 VFAVVPMLAQYCASHAEDRSGGQGGLFGESEPAL--RPEFPPSRPWTAQQKLDEEFKSIG 939 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 FYFSGHPLD + + + E G + + +V ++ K +++G + ++T Sbjct: 940 FYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLT 999 Query: 1020 FSEPAKEYEANFF 1032 S+P E E F Sbjct: 1000 ISDPTGELEMMVF 1012 >gi|194017300|ref|ZP_03055912.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061] gi|194011168|gb|EDW20738.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061] Length = 1111 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 370/1026 (36%), Positives = 574/1026 (55%), Gaps = 39/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+VHLQVHS YSLL A + ++ K A+A+TD + ++ +EF ++ GI+P Sbjct: 2 SYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG + + + +VLL EGYQ LI++ S + + K Sbjct: 62 VIGLTASVFIDEQ----------ETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + WL+ GLI +T G SG I+ + + A K +FG+ +Y+ LQ Sbjct: 108 GLKEKWLKSYHR-GLIAMTPGVSGYIETLLQHDQLEEAHDAAKQLKHIFGEGHVYIALQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D ++ ++ + ++PLVAT + +++ ED A+ L A+ + + + R Sbjct: 167 F-QQDESLAGKLRDVSKSADIPLVATGDVHYINLEDKTAYMCLKAIKAGQQLPEVEEDRA 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 EM ++ E L TVEIA RC L + LP + + Q + Sbjct: 226 EKHFRTF--EEMKEWYTQDTELLSRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR V G++ R Y +RL++EL++I +M FS YFLIV DF+++A Sbjct: 280 QFLRKVCVEGMKQRKI-------ASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GPGRGS AGS+ AY L ITD+DPLR LLFERFLNP+R+SMPD DIDF RRD Sbjct: 333 DQGIVTGPGRGSAAGSLVAYVLFITDVDPLRHGLLFERFLNPERISMPDIDIDFPDTRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+I YV++KYG VAQI+TFG+L AKAALRDVGR + + DRL KLIP+ P + Sbjct: 393 EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A + + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+ D Sbjct: 453 EA-LAASPELKAMLQQSEELRQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M ++E GL+K DFLGL+ LTL++ Q V ++ S I ++D + Sbjct: 511 GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES GMRQ L ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 571 TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + K+ HP + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+ KK K+ +D+ Sbjct: 631 RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F Sbjct: 691 ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +K+ ++ +A++ I ++ PS+N F V I YSL AIK VG Sbjct: 751 MCGLLTSVIGNEDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I A +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D +R LL S+D Sbjct: 811 SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + ++ + + TFS K + + E+ LG Y S HP Sbjct: 871 ALDHVSFLN---PDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + Y+ LR+ G + I+ + + ++ + +T+ G + ++TF + E Sbjct: 926 VQAYRDRLRENGAVDIIRLSSYIK-RKVSMGGLLTKVKSIRTKNGQSMAFITFGDETGEM 984 Query: 1028 EANFFP 1033 E FP Sbjct: 985 EGVVFP 990 >gi|284045058|ref|YP_003395398.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684] gi|283949279|gb|ADB52023.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684] Length = 1178 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 350/1046 (33%), Positives = 552/1046 (52%), Gaps = 42/1046 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 HL VHS YSLL+GA ++ + + AA QPA+ +TD + ++E + I+P++ Sbjct: 10 AHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLL 69 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + + + + LL GY+ L++L S YL + + Sbjct: 70 GCEVYVVDDRHFRAGRAERN------HLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGV 123 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 + + +EG+I LTG + + + A + +FG +++Y +Q++ Sbjct: 124 DFEIMSQ-HSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEVQKNG 182 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D+ + +V++A PLV T + +L EDY H L+ V + +++ T Sbjct: 183 IADQDKANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKMTFDT 242 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + YLK+ EM F++ P+AL T+E+A RC + + ++P + + EE Sbjct: 243 NEFYLKSNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGE----EERA 298 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR + GL +R A +R++ EL VI +M F+ YFLIV DF++++K+ Sbjct: 299 YLRQLVLDGLHLRYGNPPPAAAV------ERMEMELAVIDKMGFNAYFLIVWDFVRYSKE 352 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N + VGPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+SMPD DIDF R+ Sbjct: 353 NGVAVGPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRER 412 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAHPVS 488 VIRYV KYG E VAQIITFG + +AA RD R L Y D+L KL P S Sbjct: 413 VIRYVTEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIPDPIMGRPPS 472 Query: 489 LQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 R ++P +++++++ LEG+ R++S HAA +VI DRPL+ +VP+ Sbjct: 473 FDDCLQPGEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQL 532 Query: 548 DVRS--------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 VTQ++MK +E+ GL+K DFLGL+ L +++ +LD + + G + D+ Sbjct: 533 ADAGTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTGTRPDM 592 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD +TY ++ ++G+FQ ES GMR+ L+ ++P +ED+IAL +LYRPG +D I Sbjct: 593 TTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQI 652 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y K E I + P+L+ T GVI+YQEQ MQIA+ L+G+S ++AD LR+A+G Sbjct: 653 PTYARGKRNPESISYPDERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDLRKAIG 712 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK + M + K FI G + S+ + ++ K ADY FNK+HAA YA+I+Y+TAW Sbjct: 713 KKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIAYRTAW 772 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K ++P E++AA ++ MD +K+ F Q I+I+PP VN DF V D I + Sbjct: 773 LKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVVDGNIRFG 832 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L A+KGVG I A D PF SL DFC RVD K +N++ +E+L+ GA G S Sbjct: 833 LDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFSSTGAS 892 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----------FSDKITLEKFSVE 946 R +L L+ Q Q +++ +IF + Sbjct: 893 RKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGIPAEEF 952 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E+ +G + S HPL + +R E G+ + + ++ ++ Sbjct: 953 DQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDCTLAELSDRKDGDWVTVGGIITQCKR 1012 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 +T++G + + T + E F Sbjct: 1013 LRTKRGDHMMFATLDDLEGTVEILIF 1038 >gi|84495994|ref|ZP_00994848.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649] gi|84382762|gb|EAP98643.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649] Length = 1204 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 352/1077 (32%), Positives = 544/1077 (50%), Gaps = 64/1077 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+L+GA + ++ ++ PA+A+TD L+ A EF +KA G++PI Sbjct: 16 FVHLHVHTEYSMLDGAARIGDLFNRAGELGMPALAMTDHGYLYGAHEFWRKAQGTGVKPI 75 Query: 71 IGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + I D + + LL +G + L + S+ Sbjct: 76 IGLEAYITPGTHRTDKTRVKWGDERTRQGDDVSGSGAYTHMTLLAKNNDGLRNLFRMDSQ 135 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + RI L + +GLI TG S I +A++ ++ LF Sbjct: 136 ASLDQVYAKWPRIDRELL-DAHGKGLIATTGCPSSEIQTRLRLGQYDLAKQAASDYRDLF 194 Query: 179 G-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G + + + H +R +++LA LPL+ATN+S + ED AH L+ V Sbjct: 195 GAENYFCEVMDHQNEIERRTIKDLLRLAKELNLPLLATNDSHYTYPEDATAHGALLCVQS 254 Query: 237 STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + +R + D +YLK+ +EM + + P+A +NT+ +A C R+ Sbjct: 255 GSTLMDPNRFKFDGDGYYLKSAAEMRHTWREFPQACDNTLLVADMCEVSFTEGE---GRY 311 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + EE+ + GL R A +++ D+E+++I+ ++ Sbjct: 312 MPRFDCPPGESEESWFVKEVQRGLSARFEGEIPAYA------QKQADYEVDIISSKGYAS 365 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLNP+RMSM Sbjct: 366 YFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMRITDLDPIPHGLIFERFLNPERMSM 425 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDF + RR EVIRYV KYG +RVAQI+T+G+++AK A++D R + P++ D+L Sbjct: 426 PDFDIDFDERRRGEVIRYVTEKYGSDRVAQIVTYGTIKAKQAVKDSARVMGHPFNVGDQL 485 Query: 476 CKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P D V A+ + FR +P ++E ++ LEGL R Sbjct: 486 TKAMPADVMGKGVPLSGIYDPEHPRYAEGNEFRALVETEPHFKEVVETAKGLEGLKRQWG 545 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG+++ PL ++P+ + ++ +TQF+ E GL+K DFLGL+ LT+L ++ Sbjct: 546 VHAAGVIMSSEPLIDVIPIMKRLQDGQILTQFDYPTCETLGLVKMDFLGLRNLTILDDAI 605 Query: 587 DFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 + + + +D D TY LL + TLG+FQL+ GMR L+ MQPD EDI Sbjct: 606 ENVKTNRNEDLDLDALSKDMTDKATYRLLASGDTLGVFQLDGGGMRTLLKLMQPDNFEDI 665 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEK--------------IVSIHPLIDPMLKETQGVI 689 A ++LYRPGP+ N K + + P+L T G++ Sbjct: 666 SAALALYRPGPMGVNAHTNFALRKNGKQELTPLDPQLKGKLQQEMIDALGPILGTTYGLV 725 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQVM+IAQ L+GY+L AD+LRRAMGKK KE +DK+ F +G G ++ + Sbjct: 726 IYQEQVMEIAQQLAGYTLGNADLLRRAMGKKKKEVLDKEYVPFSTGMKAKGFNEASIAAL 785 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + +L F+DY FNK+H AAY ++SY TA++K +YP E++A +T D+ +K + + Sbjct: 786 WGVLVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSALYLGEC 845 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 R+ I+++PP VN F I + +AAI+ VG I+ A + F S DF Sbjct: 846 RRMGIKVLPPDVNDSVARFAAVGTDIRFGMAAIRNVGHNVVEAIIGAREEKGAFTSFRDF 905 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 S+ + N+R +ESL+ GA D G SR LL+ + +++ +++F Sbjct: 906 LSKCPAVVCNKRTIESLIKGGAFDGLGESRAGLLRIHEEYVDAFVSIKRQEAIGQDSLFG 965 Query: 929 HEKGTFSDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 D +T + S E+ +LG Y S HPL + IL++ Sbjct: 966 AFGDEGGDGAGGDATMMGLTSVPTVEWDKSTLLTFEREMLGLYVSDHPLFGVEHILQQHA 1025 Query: 980 IKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A G + +A ++ Q K+T+KG T + E FFP Sbjct: 1026 DTAIATLSAEDGKPEGTMVTVAGLITGLQIKRTKKGDLWAIATVEDLEGAVECLFFP 1082 >gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1142 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 401/1031 (38%), Positives = 588/1031 (57%), Gaps = 38/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ A+ A+ +TD N ++F +A AGI+PIIG + + Sbjct: 1 MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYV---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + + + LL +GY + +++S+ Y + + WL E+ Sbjct: 57 ------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYI-EFPMVEREWLAEL-N 108 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200 EG+I+L+GG G + +A + Q AE+++ +++ + + Y+++ R D R Q Sbjct: 109 EGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 V+ + + +PLVA N+ +FL E+D++AH++ +A+ S + RP+ +P Y + E Sbjct: 169 VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+DLP AL NTVEIA+RCS +++ + E+ L K+ GL Sbjct: 229 MCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELSTEDFLVKKSKEGL 283 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RL + Y +RL EL+VI +M F GYFLIV +FIQW+K N+IPVGP Sbjct: 284 EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 344 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + +A A + Sbjct: 404 TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E AD V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 463 KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 F+ +E AGL+KFDFLGL+TLT+++ +L+ + +R + + I DD +++ L Sbjct: 523 HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFAL 582 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670 L T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N K Sbjct: 583 LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642 Query: 671 ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EE Sbjct: 643 EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M Q+E F GA GI +A IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 703 MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA MT EMDN +KI F + + ++PP VN+ F V + I Y L AIK Sbjct: 763 AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+ A + F L D +RVD KK+NRR ESL+ +GA D G R L+ Sbjct: 823 GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 ++L++ K + K ++F T + + + V + E+ LG Sbjct: 883 KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y SGHP+ + L E T RG ++ +V++ + T++GSRIG T Sbjct: 943 YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002 Query: 1022 EPAKEYEANFF 1032 + + + + F Sbjct: 1003 DRSGKLDITLF 1013 >gi|282853897|ref|ZP_06263234.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139] gi|282583350|gb|EFB88730.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139] Length = 1190 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S FVHL H+ YS+L+GA S + ++A PA+A+TD N+F A EF Q + Sbjct: 1 MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59 Query: 65 AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101 ++PIIG + + D + + + + Sbjct: 60 YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 +EG L L S + R+ + + G+I TG SG + Sbjct: 120 WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ +FG + + L H ++ S +++LA ++PL+ TN+S + Sbjct: 178 GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ +AHD L+ V +R R +Y+K+ +M ++F D PEA +NT+ + Sbjct: 238 VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 +V + + + +E+ LR K GL+ + ++ Sbjct: 298 EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +RL+ EL+VI + F+ YFL+V+D A+ +PVGPGRGS AGS+ AY I I+PL Sbjct: 350 ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TFG ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P++ D++ K +P D V L I D S FR+ +P V Sbjct: 470 KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 +++E ++ LEGL R HA ++ PL LVPM++ + + + F +E+ GL+ Sbjct: 530 KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + RG+ VDL I DD TY +L TLG+FQL+ + M Sbjct: 590 KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DI+A+++LYRPGP+ + + Y RKN +E I+ IHP + D +L Sbjct: 650 RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +++ F +G ++G S Sbjct: 710 APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + D R +I ++PP VN ++F I + L A++ VG I+ A + P Sbjct: 830 AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +V N+R++ESL+ AGA D G+SR L+ +++N+ N Sbjct: 890 APDFFTFLDQVSLTVCNKRLIESLIKAGAFDFMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 +++F + ++ +E+ + S + E+ +LG Y S HPL + L Sbjct: 950 GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009 Query: 979 GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 E V + MV ++ T+ G VT + FP Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066 >gi|119717274|ref|YP_924239.1| DNA polymerase III subunit alpha [Nocardioides sp. JS614] gi|119537935|gb|ABL82552.1| DNA polymerase III, alpha subunit [Nocardioides sp. JS614] Length = 1183 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 361/1063 (33%), Positives = 546/1063 (51%), Gaps = 47/1063 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ YS+L+GA L+ + ++A Q PAIA+TD NL A +F KA G++P Sbjct: 8 SFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKARKHGVKP 67 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPT--------------VPSIVLLVSTAEGYQRLIEL 115 IIG + I + + + + EG L L Sbjct: 68 IIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEGMHNLFRL 127 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 + L+ R+ LQ+ ++G+I+ TG SG I A + + Sbjct: 128 S-SLSSLEGYFYKPRMDREILQQ-HSKGIIVSTGCPSGAIQTRLRLGQWDEAVREAGELQ 185 Query: 176 KLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + +++ L H ++ +++L +P +ATN+S + + +D +AHD L+ Sbjct: 186 DIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAHDALIC 245 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 VA +S +R + Y + + +E Sbjct: 246 VASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEFVESTG 305 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ + + E++ R + G+E R + Q+ + R++ EL +I++ + Sbjct: 306 GYMARADVPAGETEDSWFRKEVWRGIEARYPGDRL-----TQEVKDRVEMELAIISQKGY 360 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GY+L+VADFIQW+K+N I VGPGRGSGAGS+ AYAL+ITD+ PL L FERFLNP+R Sbjct: 361 CGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNPERP 420 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFDIDF RR EVI+YV KYG +RVAQI TFG L+AKAA++D R L ++ D Sbjct: 421 SMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDFGFAISD 480 Query: 474 RLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 R+ K +P D V + + FR +DP V R+ + + LEG R+ Sbjct: 481 RITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGLEGQIRN 540 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+++ PL +VP+ + +TQF+ E GL+K DFLGL L +L Sbjct: 541 WGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSNLHILDD 600 Query: 585 SLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ A RG +V L +PFDD TY L+ TLG+FQL+ GMR L MQPD DI Sbjct: 601 AVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQPDQFADI 660 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQEQVMQ 697 A+ +LYRPGP+ D+ Y RKNG+E I IHP ++P+L ET G+I+YQEQVM Sbjct: 661 TAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVYQEQVMA 720 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ+L+G++L AD LRRAMGKK KEE+DKQ F SG + G + ++ +L F+ Sbjct: 721 IAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWAILLPFS 780 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNKSH+AAY VI+Y TA++K +YP E++AA +T D+ +K+ + + R+ IQ++ Sbjct: 781 DYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRRMKIQVL 840 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN +F N I + L A++ VG+ I+ A + ++ DF S+V ++ Sbjct: 841 PPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLSKVPAQV 900 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--- 933 N+RV ESL+ AGA D + R L + +++ +++F Sbjct: 901 CNKRVFESLILAGAFDDMKHKRRALHLKHEEAVDRYVGLKRE-DEGQDSLFGGSGSDDVV 959 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATI 990 F I L + E+ +LG Y S HPL + +L + + Sbjct: 960 FDVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVLANSSDCSIGQLMLDEDRP 1019 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+++ ++ +V S Q+K T++G VT + + FP Sbjct: 1020 DGSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFP 1062 >gi|239931832|ref|ZP_04688785.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] gi|291440200|ref|ZP_06579590.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] gi|291343095|gb|EFE70051.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672] Length = 1179 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 340/1068 (31%), Positives = 540/1068 (50%), Gaps = 49/1068 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKILWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + Y S D +A + + R + ++ Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQEGCDNTRLIAEMVDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + R + + G+ R G D +++++E++ I M Sbjct: 298 KRDLMPKFDIPEGYTEVSWFREETMRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY+ Sbjct: 412 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D P+ S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRITKAMPADVLGKGIPLSGITDPSHPRYSEAGEVRSMYENEPDVKKVIDTARGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGIDIDLLSLPLDDPTTFDLLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE++K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIR 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I++ + S D+ +VD Sbjct: 832 VLPPNVNESEANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYTSFPDYLDKVD 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 S +T + + E+ +LG Y S HPL + +L G + Sbjct: 952 ESGEPGFGLDVTFTD-DEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLT 1010 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 GGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13] gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13] Length = 1267 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 367/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 66 GI----------------------------------------QPIIGCQLDIDMQDNLKM 85 GI +PIIGC+ Sbjct: 64 GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + +++L GY+ LI++VS + + RI L++ E LI Sbjct: 124 LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194 + + G I + AE+ + FK LFG+ Y+ +QRH +D + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306 K +EM +IF+D+PEAL NT+EIA + F PI+P F E ++ Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 307 ---------------------------------------EENELRNKAVAGLEVRLAQGA 327 E + L G + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS Sbjct: 420 D------DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA I Sbjct: 474 AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503 IT+G++ K+A++DV R ++P S+ +RL KL+P D AI +EA Sbjct: 534 ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558 DP L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ Sbjct: 594 GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + D+ I +D +TY L T Sbjct: 654 EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+ Sbjct: 714 TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G Sbjct: 774 MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + Sbjct: 834 ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856 N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E Sbjct: 894 NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908 + P+ S+ DF RV+ N++ +ES+ AGA D FG R Q LD + Sbjct: 954 RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTL 1013 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + +++ ++F + K + + + R E+ ++G Y S HPL Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073 Query: 969 DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ IL+ + G E +G + L +V ++ T+ G G + + Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133 Query: 1027 YEANFF 1032 E F Sbjct: 1134 GEIPLF 1139 >gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC 8503] gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B] gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19] gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC 8503] gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B] gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19] Length = 1267 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 367/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 66 GI----------------------------------------QPIIGCQLDIDMQDNLKM 85 GI +PIIGC+ Sbjct: 64 GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + +++L GY+ LI++VS + + RI L++ E LI Sbjct: 124 LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194 + + G I + AE+ + FK LFG+ Y+ +QRH +D + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306 K +EM +IF+D+PEAL NT+EIA + F PI+P F E ++ Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 307 ---------------------------------------EENELRNKAVAGLEVRLAQGA 327 E + L G + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS Sbjct: 420 ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA I Sbjct: 474 AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503 IT+G++ K+A++DV R ++P S+ +RL KL+P D AI +EA Sbjct: 534 ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558 DP L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ Sbjct: 594 GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + D+ I +D +TY L T Sbjct: 654 EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+ Sbjct: 714 TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G Sbjct: 774 MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + Sbjct: 834 ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856 N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E Sbjct: 894 NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908 + P+ S+ DF RV+ N++ +ES+ AGA D FG R Q LD + Sbjct: 954 RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTL 1013 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + +++ ++F + K + + + R E+ ++G Y S HPL Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073 Query: 969 DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ IL+ + G E +G + L +V ++ T+ G G + + Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133 Query: 1027 YEANFF 1032 E F Sbjct: 1134 GEIPLF 1139 >gi|326779885|ref|ZP_08239150.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus XylebKG-1] gi|326660218|gb|EGE45064.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus XylebKG-1] Length = 1178 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 328/1066 (30%), Positives = 530/1066 (49%), Gaps = 46/1066 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA+TD NL A +F A Sbjct: 1 MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A + PIIG + + + + + S G L Sbjct: 60 ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A + + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178 Query: 175 KKLFGDR-LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 K +FG+ ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + + E + + G+ R G D ++++++E+++I +M Sbjct: 298 AKNLMPKFEIPDGFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + ++ R ++P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +TY LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA + G S +++++L Sbjct: 712 QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L AI+ VG I+ + + + DF +V+ Sbjct: 832 VLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L+ + + V++ ++F + Sbjct: 892 AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951 Query: 934 FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987 + + E+ +LG Y S HPL + +L + + Sbjct: 952 SGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQLMGG 1011 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 DYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057 >gi|115380319|ref|ZP_01467326.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|115362676|gb|EAU61904.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 1058 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 397/1006 (39%), Positives = 573/1006 (56%), Gaps = 37/1006 (3%) Query: 52 LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 +F+ ++F +KA AGI+PIIG + + + ++L+ AEGY Sbjct: 1 MFATIDFYKKAKDAGIKPIIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYAN 55 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L L S Y+ D RI L + ++GL LT G + A F A + Sbjct: 56 LRYLSSTAYM-DGFYYHPRIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAA 113 Query: 172 LTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 +K +F ++ +Q + ++ + + QL+ ++PL AT ++ ++ ED AH+ Sbjct: 114 TEYKDIFEPGHFFLEVQSNGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHE 173 Query: 230 VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 +LM +A +S R R + D Y+ + EM+ F D PEA+ NT IA +C+ L++ Sbjct: 174 LLMCIASGKTLSDGKRLRHSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLG 233 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNV 347 P+LP F + ++ + A GL R + A + YR RL+ ELNV Sbjct: 234 KPMLPTFKVPD----SHTPDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNV 289 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M FSGYFLIV DFI WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERF Sbjct: 290 IQKMGFSGYFLIVQDFINWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERF 349 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFDIDFCQDRRDEVI+YV KYG V QIITFGSL+AK+ LRDV R + Sbjct: 350 LNPERVSMPDFDIDFCQDRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGL 409 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQK 517 P+S+ DR+ KL+P + I ++R +E + +LEI+ Sbjct: 410 PFSEGDRIAKLVPEVLGITLKEA-IEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALA 468 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL+R HAAG+VI D+PL + VP+Y+ +TQF +E AGL+KFDFLGLK Sbjct: 469 LEGLHRQPGMHAAGVVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLK 528 Query: 578 TLTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 TLT++Q +LD + + IP D + L+ T G+FQ+ESSG + + Sbjct: 529 TLTVIQNALDLINRNPPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMK 588 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692 ++P C ED+IA +LYRPGP+D+ +V + NRK+G+E + HP ++P+LK+T GVI+YQ Sbjct: 589 LKPSCFEDVIAAGALYRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQ 648 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQI+Q+L GY+L AD+LRRAMGKK E M ++ F+ G KN + +A IF+L Sbjct: 649 EQVMQISQVLGGYTLGRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDL 708 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA+YGFNKSH+AAY +I+ TAW+K H+PVEF+AA +T E DN +K+ + +AR+ Sbjct: 709 MEKFAEYGFNKSHSAAYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREA 768 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 Q++PP VN + F D +I + L AI GVG I+EA D F L DFC RV Sbjct: 769 GHQVLPPDVNQSDMAFGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERV 828 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 DS+++N++VLE+LV AGA D R QL ++++ +K++ ++F G Sbjct: 829 DSRRVNKKVLEALVKAGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAG 888 Query: 933 TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 + K + R E+ +GFY SGHPL Y L++ + Sbjct: 889 PAAGGGGGMKDDYAQVEEWPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQ 947 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R I + +V + +++ T+ G R+ WVT + + E FP Sbjct: 948 RARRDEKITVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 993 >gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489] gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489] Length = 1479 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 352/1105 (31%), Positives = 550/1105 (49%), Gaps = 94/1105 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58 +S F HL H+ +S+L+ +S+ +++ A + PA+A+TD N+ A F Sbjct: 257 ESAEFSHLHNHTQFSILQSTISVPDLIKATAKNNMPAVAMTDHANMMGAFHFVNGVLNHN 316 Query: 59 -------------SQKACAA----------------GIQPIIGCQLDIDMQDNLKMTNQG 89 + I PIIGC+ + + Sbjct: 317 KGVKSRNDANEIRYEATQENRLEEGEEPLHEFIPEKEITPIIGCEFQVCED------HTN 370 Query: 90 KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149 K+ IV L GY L ++ S + +D RI +++ E LI+LTG Sbjct: 371 KSQKDNGYQIVFLAKNKNGYHNLAKMSSIAF-VDGKYYVPRIDKKIIEQY-KEDLIVLTG 428 Query: 150 GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHE 208 G + AE LL +K+ FGD LY+ + RH D R +Q +++ A H Sbjct: 429 NLYGEVPSLVLNVGENQAEDALLWWKEQFGDDLYMEIMRHGQEDEDRVNQVLIKFAKKHN 488 Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMV 261 + LVATNN+ ++ +E+ AHD+L+ V S ++Y K+ EM Sbjct: 489 VKLVATNNTYYVEKENAYAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEMK 548 Query: 262 SIFSDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRN 313 +F D+PEA+ N E+ + P F E + D ++ E LR+ Sbjct: 549 ELFKDIPEAITNIQEVVDKIETFTLARDVLLPAFDIPEEFVFEEDKIDGGKRGENKFLRH 608 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 G + I G + +RLDFEL VI + + GYFLIV DFI+ A+K ++ Sbjct: 609 LTYEGAK-------IRYGEITPEIDERLDFELKVIEKTGYPGYFLIVEDFIRAARKMDVS 661 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 VGPGRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ Y Sbjct: 662 VGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDY 721 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--------- 484 V +KYG +VAQIIT+G++ AK+++RD RAL +P DR+ KLIPN Sbjct: 722 VIDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVDE 781 Query: 485 ----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + +A + E D L + LEG R+ HA G++I ++ Sbjct: 782 KTLKSKFNSEELAKINELLEISEGDDLESETLNQAYVLEGSVRNTGIHACGVIITPDDIT 841 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599 + VP+ SD+ TQF+ +E AGL+K DFLGLKTLTL++ ++ + + GV++D Sbjct: 842 KFVPVALAKDSDMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVELDPE 901 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 P DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP++ I Sbjct: 902 NFPLDDQKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIP 961 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK+G E+I+ + L ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGK Sbjct: 962 SFIARKHGTEEIIYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGK 1021 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K K +DK K +FI AS G + I++ FA Y FNKSH+ YA I+YQTA+ Sbjct: 1022 KQKHVLDKMKPKFIEQASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYC 1081 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYS 838 K HYP E++AA ++ M++++ + F ++ ++ ++++ P VN F V D + + Sbjct: 1082 KAHYPAEYMAAVLSNNMNDIKTVTFFMEECKRMGLEVLGPDVNESYYKFAVNDAGAVRFG 1141 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-Y 896 + A+KGVG I+E D P+ S+ D R+D + N+R E+L AG D FG Sbjct: 1142 MGAVKGVGRGAVETIVENRKKDGPYKSVFDLAKRIDLRAANKRAFENLTLAGGFDSFGDT 1201 Query: 897 SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 R Q L L+ + KY ++++ + ++F + + + Sbjct: 1202 HRAQYLHDEGDGITFLEKVMKYGSKFQESQNSSQVSLFGEASDVQIPEPVVPPCEEWGTM 1261 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQK 1007 + E+ V+G Y SGHPLD +K ++ G + + +A ++ Q + Sbjct: 1262 EKLRKEKEVVGIYISGHPLDDFKSEIKSFCNSGIAAVHNMEQYVNKELSIAGVITDVQHR 1321 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ G + + Y+ F Sbjct: 1322 VSKNGKGWAMFSMEDYTDSYDFRIF 1346 >gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87] Length = 1462 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 334/1085 (30%), Positives = 538/1085 (49%), Gaps = 78/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F HL HS +S+L+ +S+ ++++ PA+A+TD N+ A F ++ Sbjct: 262 FAHLHNHSQFSVLQSTISIADLVNAAGEQNMPAVALTDHANMMGAFHFVKEVGAYNKNVQ 321 Query: 62 ------------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A A ++ IIGC+ + + K+ +V+L +GY Sbjct: 322 AKNEEAEANGEPAQAKELKAIIGCEFFVC------ENHTDKSRKDNGYQVVMLAKNKKGY 375 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S+ Y D RI +++ E +I+LTG G + + AE+ Sbjct: 376 HNLAKMSSKAYT-DGFYYVPRIDKEVVKQY-KEDVIVLTGNLYGEVPSKILNVGEKQAEE 433 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K+ FGD LY+ + RH D R +Q +++ + H++ L+ATNN+ + ++D AH Sbjct: 434 ALLWWKEEFGDDLYIEIMRHNQEDENRVNQVLIEFSKKHDIKLIATNNTYYWKKDDANAH 493 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 D+L+ V + + L N+ ++ ++ E I+ Sbjct: 494 DILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKTAEEMKNLFKDLPEAISNIKEIVDKI 553 Query: 289 APILPRFIE---------------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 P + D ++ E L++ G E G Sbjct: 554 EPFELARDVLLPAFTIPEEFLVEEDKVDGGKRGENAYLKHITYKGAEE-------RYGEI 606 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 ++RLDFEL+VI + GYFLIV DFI+ A+ ++ VGPGRGS AGS AY L IT Sbjct: 607 TPAIKERLDFELSVIENTGYPGYFLIVEDFIREARNLDVSVGPGRGSAAGSAVAYCLGIT 666 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+G++ Sbjct: 667 NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIGKYGANQVAQIITYGTMA 726 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501 AK+++RD R L +P S DR+ KLIPN + + + Sbjct: 727 AKSSIRDTARVLDLPLSDADRIAKLIPNTKLGKIFGMDEKALKAKFRSEEVDSINELLNI 786 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 D + + ++ LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 787 AEGDDLEAQTVNQARVLEGSVRNTGIHACGVIITPSDITNYVPVSVAKDSDLYVTQFDNS 846 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620 +E AGL+K DFLGLKTLTL++ ++ + R P DD ETY L T+GI Sbjct: 847 VVESAGLLKMDFLGLKTLTLIKDTIKIVKGRHNIDLVPDEFPLDDEETYKLFQRGETVGI 906 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E+I P ++ Sbjct: 907 FQYESPGMQKHMQALKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEISYDLPDMEE 966 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 LKET G+ +YQEQVM ++Q L+G++ EAD+LR+AMGKK+ + + K +FI G G Sbjct: 967 YLKETYGITVYQEQVMLLSQKLAGFTKGEADMLRKAMGKKLVALLAQLKPKFIGGGEAKG 1026 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M++++ Sbjct: 1027 HPTEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIK 1086 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD 859 ++ F ++ ++ + ++ P VN F V + + + + AIKGVG I+E Sbjct: 1087 QVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDYAVRFGMGAIKGVGAGAVATIVENRKG 1146 Query: 860 --KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909 P+ S+ D R+D + N++ E+L AG DCF R Q L+ + Sbjct: 1147 EAGPYRSIFDMAKRIDLRAANKKAFENLALAGGFDCFKETHRAQYFHDEGDGMSFLEKVV 1206 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 K+A ++N + ++F + ++ + + E+ V+G Y SGHPLD Sbjct: 1207 KFAAKFQENENSSQVSLFGEASEVQIPEPSVPPCEEWGTMEKLRREKEVVGIYISGHPLD 1266 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K ++ + A + I ++ Q + ++ G T + + Y Sbjct: 1267 DFKKEIQYFCNGSLSDFRALEKVVNREISFGGVISDVQHRMSKMGKGWAMFTVEDYNESY 1326 Query: 1028 EANFF 1032 E F Sbjct: 1327 EFRMF 1331 >gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 1115 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 478/1008 (47%), Positives = 666/1008 (66%), Gaps = 31/1008 (3%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 + I+DT NLF ALEFS AGIQPI+G Q+ I +D + G+ P P +VLL Sbjct: 1 MGISDTGNLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLC 57 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 GY L++LVS+ +L ++ ++ L L E ++GLI+LTGG +GP+ R Sbjct: 58 QNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIILTGGPAGPVGRLLADGQ 116 Query: 164 SQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222 ++ AE L + F R YV + RH+ + E +V LAY H+LPLVATN + F Sbjct: 117 AEKAEIVLARLARAFAGRCYVEIMRHKLEVEDRIEPMLVSLAYKHDLPLVATNEAFFADR 176 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 YEAHD L+ +A +SQ +R R+TP+HY K+ EM ++F+DLPEA +NT+ IARRC+ Sbjct: 177 GMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPQEMRALFADLPEACDNTLVIARRCA 236 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD------ 336 F + I E LR K + GL+ RLA+ G + Sbjct: 237 F-----GVAKRKPILPPYRMDGLTEAEVLRKKTLEGLDDRLAKHVFKDGMTDDEKDHAAK 291 Query: 337 -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 YR+R++FEL VI +M F GYFLIV+DFIQW+K + IPVGPGRGSGAGS A+ALTITD+ Sbjct: 292 PYRERIEFELGVIEQMGFPGYFLIVSDFIQWSKAHEIPVGPGRGSGAGSAVAWALTITDL 351 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+ Sbjct: 352 DPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQAKYGYSQVAQIITFGKLQAR 411 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEI 514 A LRDVGR LQMPY QVDR+CKL+PN+PA+P++ QA+ ++ +E + D +V L+++ Sbjct: 412 AVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALENEPLLKEQKERDETVSHLIDL 471 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFL Sbjct: 472 AMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFL 531 Query: 575 GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLT++ ++ + + +G+ +DLS IP DD ++Y LL+ G+FQLESSGMR L Sbjct: 532 GLKTLTVMVTAVKHVKKSKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLR 591 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 M P+ +ED+IA+V+LYRPGP+D I Y K+GKE+ +HPL++P+LKET G+++YQE Sbjct: 592 KMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQE 651 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQIAQ+LSGYSL AD+LRRAMGKK +EEMD+Q+ +F+ GA+ + A IF+ + Sbjct: 652 QVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKV 711 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+ F Q+ + Sbjct: 712 AKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLG 771 Query: 814 IQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867 I+++PP +N+ F V + + Y+LAA+K VG + ++E F + D Sbjct: 772 IKLLPPDINSSQPTFSVELLPDGGSAVRYALAALKNVGEAAMKSLVEERDRGGRFKDMGD 831 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 F +R+DSK LNRR LE++V AG D +R +L ++ D + +YA ++R + ++ Sbjct: 832 FAARMDSKVLNRRQLENMVKAGVFDSIDKNRGRLFKNADTLCRYAAQAAEDRQSSQMSLL 891 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 G+ + + LE + + E +GFY S HPLD Y ++++ + E Sbjct: 892 G---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELP 948 Query: 988 ATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ +RLA ++SKQ++ + KGSR ++ FS+ + +E F Sbjct: 949 RHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 996 >gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM 18315] gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM 18315] Length = 1266 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 369/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAG--- 66 F+HL VH+ YSLL+G S++ ++DK D PAIA+TD +F EF K + G Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63 Query: 67 -----------------------------------------IQPIIGCQLDIDMQDNLKM 85 +PI GC+ Sbjct: 64 GAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHSK 123 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + +++L GY+ LI++VS + + RI L++ E LI Sbjct: 124 LAS--QNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------- 196 + + G I + AE+ +L FK LFG+ Y+ +QRH +D Sbjct: 180 ICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQV 239 Query: 197 --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++LA H++ ++ATN+ F++ ED EAHD L+ ++ + +R R T ++ Sbjct: 240 TANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306 K +EM ++FSD+PEAL NT+EIA + F H PI+P F E ++ Sbjct: 300 KTTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTEQ 359 Query: 307 ---------------------------------------EENELRNKAVAGLEVRLAQGA 327 E + L+ G ++ Sbjct: 360 DLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGD-- 417 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS Sbjct: 418 ----ELNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA I Sbjct: 474 AYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503 IT+G++ K+A++DV R ++P ++ +RL KL+P D AI +EA Sbjct: 534 ITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAAT 593 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558 DP L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ Sbjct: 594 GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + D+ I +D TY L T Sbjct: 654 EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGKT 713 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+ Sbjct: 714 TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G Sbjct: 774 MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGK 833 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + Sbjct: 834 TNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLS 893 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-E 855 N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG ++I+ E Sbjct: 894 NIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEE 953 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908 + P+ + DF RV N++ +ESL AGA D FG R Q L+ + Sbjct: 954 RRKNGPYKDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETL 1013 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + +++ ++F + K + K + R E+ ++G Y S HPL Sbjct: 1014 VRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPL 1073 Query: 969 DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ IL + G E G ++ +V ++ T+KG+ G + + Sbjct: 1074 DEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTGS 1133 Query: 1027 YEANFF 1032 E F Sbjct: 1134 GEIALF 1139 >gi|254382569|ref|ZP_04997927.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1] gi|194341472|gb|EDX22438.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1] Length = 1180 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 334/1069 (31%), Positives = 531/1069 (49%), Gaps = 50/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MTKTP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 +G+ PIIG + + + + + + + G L Sbjct: 60 SGVTPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y + R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STEEMYAIDSSDAWQEGCANTKLVADQIDTEGMFK 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + R + + G+ R G D ++ ++E++ I M Sbjct: 298 FRNLMPKFDIPEGHTEVSWFREETMRGMHRRYPGG------IPDDRLKQAEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DPL L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGQDKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D P+S + R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIPLSGILDPQHPRYGEAGEIRGMYENEPDVKKVIDTARGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ ++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITDHVPVWVRHTDQVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN +++I IHP ++ +L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEGGAKKKGFSDQAIKALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VG I++ + + DF +V+ Sbjct: 832 VLPPNVNESEPNFAAQGDDVILFGLTAVRNVGNNVVDSIIKTRKAKGKYSTFPDFLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R +ESL+ AGA D G++R L+ + + V++ ++F Sbjct: 892 AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGAMGDE 951 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F + S E+ +LG Y S HPL + +L G + Sbjct: 952 AGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQL 1010 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1011 TGGEHSDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059 >gi|312140121|ref|YP_004007457.1| DNA polymerase iii alpha subunit dnae1 [Rhodococcus equi 103S] gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S] Length = 1178 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 315/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + + A+ +TD N++ A EF A GI Sbjct: 2 ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + + + + ++ + G + L +L S Sbjct: 62 KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 122 LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 181 WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y +E + D + Sbjct: 241 TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + + L + + GL+ R G ++Y +R ++E+ VI +M F Sbjct: 301 MPIFPVPEGETQASWLHKEVMRGLDRRFPAG------PPREYIERAEYEIGVINQMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G ++VAQ+ITFG+++ KAA++D R Sbjct: 415 PDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R ++P V ++ + ++ LEGL R+ Sbjct: 475 QITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + RGV +DL +P +D TY LL TLG+FQL+ S MR L MQP EDI Sbjct: 595 AIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654 Query: 644 IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A+++LYRPGP+ Y +RKNG++ + IHP ++ LK +T G+I+YQEQ+MQ Sbjct: 655 VAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ +++ + FA Sbjct: 715 IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN VDF I + L A++ VG I+ A + F D+ +++D+ Sbjct: 835 PPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +++V ESL+ AG D G+ R L+ + +K ++F + S Sbjct: 895 CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDADESI 954 Query: 937 K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + +S + E+ +LG Y SGHPL+ + +L + Sbjct: 955 TSVFNVKVPD-EEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIK 1013 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S ++ + G + + E FFP Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056 >gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC 33707] Length = 1178 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 315/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + + A+ +TD N++ A EF A GI Sbjct: 2 ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + + + + ++ + G + L +L S Sbjct: 62 KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 122 LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 181 WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y +E + D + Sbjct: 241 TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + + L + + GL+ R G ++Y +R ++E+ VI +M F Sbjct: 301 MPIFPVPEGETQASWLHKEVMRGLDRRFPAG------PPREYIERAEYEIGVINQMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G ++VAQ+ITFG+++ KAA++D R Sbjct: 415 PDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R ++P V ++ + ++ LEGL R+ Sbjct: 475 QITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + RGV +DL +P +D TY LL TLG+FQL+ S MR L MQP EDI Sbjct: 595 AIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654 Query: 644 IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A+++LYRPGP+ Y +RKNG++ + IHP ++ LK +T G+I+YQEQ+MQ Sbjct: 655 VAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ +++ + FA Sbjct: 715 IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN VDF I + L A++ VG I+ A + F D+ +++D+ Sbjct: 835 PPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +++V ESL+ AG D G+ R L+ + +K ++F + S Sbjct: 895 CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDADESI 954 Query: 937 K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + +S + E+ +LG Y SGHPL+ + +L + Sbjct: 955 TSVFNVKVPD-EEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIK 1013 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S ++ + G + + E FFP Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056 >gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7] Length = 1281 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 368/1153 (31%), Positives = 577/1153 (50%), Gaps = 137/1153 (11%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 Y+E F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 14 YME---PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVS 70 Query: 64 AA-----GI----------------------------------------QPIIGCQLDID 78 GI +PIIGC+ Sbjct: 71 KKNSKPLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCA 130 Query: 79 MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138 + +++L GY+ LI++VS + + RI L++ Sbjct: 131 RNGRHSKLASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEK 187 Query: 139 IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----- 193 E LI+ + G I + AE+ + FK LFG+ Y+ +QRH +D Sbjct: 188 YH-EDLIICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADC 246 Query: 194 ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + +++LA+ + + L+ATN+ F++ +D EAHD L+ ++ + R R Sbjct: 247 TIFPHQQEVNKVLIELAHKYNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR 306 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306 + ++K +EM +IF+D+PEAL NT+EIA + F PI+P F E ++ Sbjct: 307 YSKQEWMKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESY 366 Query: 307 ----------------------------------------------EENELRNKAVAGLE 320 E + L G + Sbjct: 367 RQKLTEHDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAK 426 Query: 321 VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRG 379 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRG Sbjct: 427 ELYGDPL------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRG 480 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG Sbjct: 481 SAAGSAVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYG 540 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDS 496 ERVA IIT+G++ K+A++DV R ++P S+ +RL KL+P D AI Sbjct: 541 AERVAHIITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVP 600 Query: 497 RFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRS 551 +EA DP L+ +Q LEG R+ HA G++IG +S +VP+ +D Sbjct: 601 ELKEAANGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGE 660 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610 ++ VTQ+ IE+ GLIK DFLGLKTL++++++++ + D+ I +D +TY Sbjct: 661 EMLVTQYEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYK 720 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 L T G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+ Sbjct: 721 LYCDGKTTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEE 780 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 I P+++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K Sbjct: 781 IKYDIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKS 840 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 +F++G NG + I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA Sbjct: 841 KFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAA 900 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTT 849 ++ + N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG + Sbjct: 901 VLSRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESA 960 Query: 850 ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS---- 904 ++I+E + P+ S+ DF RV+ N++ +ES+ AGA D FG R Q Sbjct: 961 VQNIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKG 1020 Query: 905 ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 LD + +Y + +++ ++F + K + + + R E+ ++G Sbjct: 1021 ELFLDTLVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGI 1080 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPLD Y+ IL+ + G E +G + L +V ++ T+ G G + Sbjct: 1081 YLSAHPLDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILK 1140 Query: 1020 FSEPAKEYEANFF 1032 + E F Sbjct: 1141 IEDFTGSGEIPLF 1153 >gi|256396217|ref|YP_003117781.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928] gi|256362443|gb|ACU75940.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM 44928] Length = 1189 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 343/1064 (32%), Positives = 527/1064 (49%), Gaps = 44/1064 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA L ++ ++ PA+A+TD N+ A +F+++A AAGI Sbjct: 2 SDSFVHLHVHTEYSMLDGAARLKDMFKHASSLGMPAVAMTDHGNMHGAADFTKQAMAAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PI+G + + + + + G Q L +L S Sbjct: 62 KPILGIEAYVAPESRYNAKPVRWGQPHQKSDDVSGGGLYGHATIWAQNVTGLQNLTKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 R + ++ R+ + E + GL+ TG SG + A ++++ Sbjct: 122 RAFTEGFARKYPRMDAELMAE-HSAGLMATTGCPSGFVQTRLRLGHFDEALAAAGQYQEI 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + Y+ L H + ++ + +P V TN+S + E+ AHD L+ + Sbjct: 181 FGKENFYLELMDHGLDIETRVREGLLDIGRKLNIPPVVTNDSHYTYREESAAHDALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 ++ ++ DR R D Y ++ + + E + Sbjct: 241 TASNIADPDRFRFGGDGYYLKSADEMRAINTDDIWQEGCRNTLAIAEKVNPEGMFAYRNL 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + E+ R A GL R G + Y RL+FEL+VI M F Sbjct: 301 MPRLEAPDGLTEDQWFRKLAYDGLNKRFPAGVPD----EKVYHARLEFELDVILSMGFPS 356 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YF++VADFI WAK N I VGPGRGS AGS+ A++L ITD+DP+ F LLFERFLNPDR++ Sbjct: 357 YFIVVADFINWAKDNGIAVGPGRGSAAGSLVAWSLGITDVDPIPFDLLFERFLNPDRVTP 416 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD DIDF RR +VIRYV KYG ++VA I TFG ++AKAA++D R L P++ DR+ Sbjct: 417 PDIDIDFDDRRRSDVIRYVTEKYGEDKVAMIATFGRIKAKAAIKDSSRILGYPFAMGDRI 476 Query: 476 CKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K +P D + + R D V ++++ + +EGL R Sbjct: 477 TKAMPPDVMGKSMPLSGVFDSNHPRYGEAGEIRGMYEQDADVKKVIDTGRGVEGLIRQPG 536 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HAAG++I ++ VP+ + +TQF+ E+ GLIK DFLGL+ LT++ +L Sbjct: 537 VHAAGVIISPETITDHVPVMMRPADGVIITQFDYPTCEEIGLIKMDFLGLRNLTIITDAL 596 Query: 587 DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + K + P DD TY LL TLG+FQL+ +R L M+PD ED+ A Sbjct: 597 NNVETTTGKRLNTLEFPLDDPLTYELLCKGDTLGVFQLDGGPLRSLLRQMRPDNFEDVSA 656 Query: 646 LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699 +++LYRPGP+ ++ + Y RKN ++ I IHP + +L + G+IIYQEQVM A Sbjct: 657 IIALYRPGPMGANSHINYAERKNNRQPITPIHPELEAPLKEVLGVSYGLIIYQEQVMAAA 716 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++L+GYSL++AD+LRRAMGKK KE +DK+ F G + NG S ++++L FADY Sbjct: 717 RVLAGYSLAQADLLRRAMGKKKKEVLDKEYVGFEKGMADNGYSAQATKAVWDVLVPFADY 776 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+ AY I+YQTA++K HYP E++AA +T + ++ + + R+ I+++PP Sbjct: 777 AFNKSHSVAYGFIAYQTAYLKAHYPAEYMAALLTSTATDKDRSAIYLGECRRMGIKVLPP 836 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878 VN F I + L AI+ VG I+ F S DF ++VD N Sbjct: 837 DVNDSLHQFTPVGTDIRFGLGAIRNVGENVVTSIIATRKAKGRFTSFNDFLAKVDLPVCN 896 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 +R +ESL+ AGA D G+SR L++ + V+K +++F + I Sbjct: 897 KRTIESLIKAGAFDSLGHSRRGLIEQHERAIDSVVDVKKQEALGQDSLFGSLMDGGQEAI 956 Query: 939 T------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VAT 989 T + V E+ +LG Y S HPL + +L Sbjct: 957 TGGIELAFSDI-EWDKKVLLGFEREMLGLYVSDHPLSGVENLLASKADCSIASLTGENDR 1015 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + +A +V +K T++G+ + + E FFP Sbjct: 1016 ADGSIVTIAGLVAGLARKVTKQGNTWAAASVEDLEGGIETMFFP 1059 >gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101] Length = 1510 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 348/1094 (31%), Positives = 554/1094 (50%), Gaps = 85/1094 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------- 59 K+ F HL H+ +S+L+ + + NI+ A + PA+A+TDT N+ A F Sbjct: 257 KAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHN 316 Query: 60 -------QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 + AG I+PI+GC+ +I + K+ +VLL Sbjct: 317 KAASGKNKALVEAGEEPTETEIKPIVGCEFNIC------ENHLDKSKKDNGYQVVLLAKN 370 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 GY L ++ S Y + RI + +++ +++L+G G I Sbjct: 371 KAGYHNLAKMASIAYT-EGFYYVPRIDKNIVEKY-KGDIMVLSGNLYGEIPSKILNIGEN 428 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ L+ +K+ FG+ Y+ + RH D R +++ + H + L+ATNN+ +L++ED Sbjct: 429 QAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKED 488 Query: 225 YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V + ++Y K+ +EM +F+DLPEA+ N E+ Sbjct: 489 ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEV 548 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329 + +LP+F + + ++EE+ LR+ + G + Sbjct: 549 IDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKR-------R 601 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 G + ++RLDFEL I+ + GYFLIV DFI A+K ++ VGPGRGS AGS AY Sbjct: 602 YGEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG ++VAQIIT+ Sbjct: 662 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITY 721 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-----------------LQAI 492 G + K+A+RD R L +P + DR+ KLIP + Sbjct: 722 GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEF 781 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + D ++ ++ LEG R+ HA G++I ++ VP+ SD Sbjct: 782 DNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSD 841 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611 L VTQF+ E AGL+K DFLGLKTLTL++ ++ + R D P DD ETY L Sbjct: 842 LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYAL 901 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+GIFQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG E+I Sbjct: 902 FQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEI 961 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 L ET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K + Sbjct: 962 KYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1021 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ A++ G I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA Sbjct: 1022 FVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850 ++ M++++++ F ++ ++ +Q++ P VN F V D+ + + + AIKGVG+ Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGAV 1141 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904 I+E D + S+ D R+D + N++ +E+L AG D F G +R Q Sbjct: 1142 ETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGI 1201 Query: 905 --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + +Y ++N + ++F + + ++ + E+ V+G Y Sbjct: 1202 TFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIY 1261 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD ++ ++ E + G N+ A ++ + Q + + G Sbjct: 1262 ISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAAFNL 1321 Query: 1021 S--EPAKEYEANFF 1032 + + YE F Sbjct: 1322 EGYDES--YEFKIF 1333 >gi|229543549|ref|ZP_04432609.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229327969|gb|EEN93644.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1114 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 381/1027 (37%), Positives = 587/1027 (57%), Gaps = 38/1027 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHLQV ++YSLLE +S+ A +AITD N ++ A F + GI+P Sbjct: 2 RFVHLQVQTAYSLLESTISIPEWAAYAKALHYDTLAITDRNVMYGAFPFYKACRENGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI T +VLL GY+ L+++ S + Sbjct: 62 IIGMTADI----------MSSFEPDTAYPVVLLAKNETGYRHLMKISSAIQTRP----EP 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I + WL+ ++GLI T G G I++A AE+ + ++ +FG Y+ L+ + Sbjct: 108 GIFIKWLRAY-SDGLIAFTPGLEGEIEQALLRGDEARAEEVAVLYRDIFGPSFYLALENN 166 Query: 190 RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + + L+ +P VA N +L +ED AH+VL A+ ++ ++RPR Sbjct: 167 GTVQAKKVLPDMHALSEKLGIPEVAAANVKYLKKEDAFAHEVLRAIKAGVKLTDENRPRP 226 Query: 249 -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + H K + EM +F+D PEAL NT +IA CS ++ +LP F + Sbjct: 227 ESGTHDFKPQEEMEQLFADFPEALANTEKIADACSVEIKTGQRLLPAFPVPGG----QTA 282 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L GL R+ + Y RL++EL +I M+FS YFLIV DF+++A Sbjct: 283 DAFLEEVCRKGLAARVPN-------LEERYTDRLEYELKIIQEMQFSDYFLIVWDFMKYA 335 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +++ I GPGRGS AGS+ AYAL ITD+DP+++ LLFERFLNP+R+SMPD D DF +R Sbjct: 336 REHGILTGPGRGSAAGSLVAYALYITDVDPVQYGLLFERFLNPERISMPDIDSDFPDHKR 395 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DE+IRYV KYG + VAQIITFG+ AKAA RDV R + ++++L + IP+ P + Sbjct: 396 DEMIRYVAEKYGRQHVAQIITFGTFAAKAAARDVARIFGLSAKELEQLSRFIPSQPGMTL 455 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S FRE +L E + LEGL RH STHAAG++I PL+ ++P+ Sbjct: 456 KKA-YEASSAFREWIGQSDQHRKLFETALLLEGLPRHVSTHAAGVIISGEPLTGIIPVQ- 513 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 + + +TQ+ M +E+ GL+K DFLGL+ LT+L+ L + + G K+ L +P DD Sbjct: 514 EGHDGIFLTQYPMNHLEEIGLLKMDFLGLRNLTILEHILTGIEKGTGRKIRLQDVPLDDP 573 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T+ L ++ T GIFQ ES GMR+ LE ++P EDI+A+ +LYRPGP++NI Y RK+ Sbjct: 574 QTFRLFSSGNTTGIFQFESDGMRKVLERLKPTEFEDIVAVNALYRPGPMENIPAYIERKH 633 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G + + HP + P+L++T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK +E +D Sbjct: 634 GLKPVEYPHPDLQPILEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREILD 693 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +Q+ FI+GA K G + A I++ + +FA+YGFN+SHA AY++++ + A++K HYP+ Sbjct: 694 EQRLHFINGAQKKGYERKTANTIYDFIVRFANYGFNRSHAVAYSMLACRLAYLKAHYPLY 753 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+A+ +T + N +KI ++ ++A+Q I+++PPSV F V + I YSLAAIKG+G Sbjct: 754 FMASLLTSVIGNEDKIAQYIREAQQMGIRVLPPSVQHSHYPFTVENGAIRYSLAAIKGIG 813 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + + +++ +PF SL D RV K LNR++LE+ F+GA+D FG R LL S+D Sbjct: 814 YASIKELLKERKRRPFKSLFDLVLRV--KGLNRKILEAFAFSGAMDEFGKDRAVLLASID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++A+ ++ + + ++F E FS + + + + E++ LG Y SGH Sbjct: 872 VALEHAEIMKPD--DGQADLF-FEDEAFSIEPNYVETEPISLMDKLAFEKQYLGLYLSGH 928 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P Y+P + G+ + + IR A + + +T++GS + ++ S+ E Sbjct: 929 PAGQYRPGWDEAGVLAVSKLQPGM--RKIRFGACITDTRTIRTKQGSLMAFLRMSDETDE 986 Query: 1027 YEANFFP 1033 E FP Sbjct: 987 IECVVFP 993 >gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1] gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1] Length = 1174 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 414/1053 (39%), Positives = 589/1053 (55%), Gaps = 41/1053 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SPSFVHL+ H+ YS+++G L +++++ AAD+QPA+AITD +NLF A++F A Sbjct: 1 MTSSPSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARG 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QP+IG L ++ + + K ++LLV GY L EL+S + + Sbjct: 61 KGVQPLIGADLWLEAESDEKQP----------SRLLLLVQNRTGYLNLCELISHAWTENL 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L + +GLI L+G G + A + AE + L LF R Y+ Sbjct: 111 QRHQACVAWPQLAK-HGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFYL 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR + + VV LA LP+VAT+ FLS +D+EAH+ + +A ++ Sbjct: 170 ELQRAGQAGNEAQVRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTNP 229 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R T + + K ++MV +F+D+P A+ NT+ IARRC L + P LP F D Sbjct: 230 RRVKRFTREQHFKTAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVDG 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359 + ++ R+ + AGL RLAQ + + Y +RLDFE+ I +M F GYFLI Sbjct: 290 QRMAPDDYFRHASHAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFLI 349 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNPDR+SMPDFD Sbjct: 350 VADFINWAKGNGCPVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDFD 409 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQ RD VI YV+ KYG + V+QI TFG++ AKAALRDVGR L M Y VD + KL+ Sbjct: 410 IDFCQGNRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLV 469 Query: 480 PNDPAHPVS------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 P P V+ + A + + + V LL +++++EG R+ Sbjct: 470 PAPPGKTVTLKRPGDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIGM 529 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QK 584 HA G++I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L + Sbjct: 530 HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKD 589 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + I DD +TY LL+ T+ +FQLES GM+ L +P EDII Sbjct: 590 FIRTRHADRADFAFENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDII 649 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 ALV+LYRPGP+D I + RK+GKE++ HPL+ +L+ET G+++YQEQVMQ+AQ L G Sbjct: 650 ALVALYRPGPMDLIPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLGG 709 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EEM K + F GA+KNGI +A IF+L+ KFA YGFNKS Sbjct: 710 YSLGGADLLRRAMGKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNKS 769 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAYA+++Y TAW K HY EF AA+M++ +D+ +K+K F DA + P VN Sbjct: 770 HAAAYALLAYHTAWAKVHYLAEFTAANMSVALDDTDKLKIFHDDAVSLGVVFEAPDVNAG 829 Query: 825 CVDFKV------GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877 F+ R+ Y L AIKG G I+ P+ SL DF +RVD ++ Sbjct: 830 GYRFEPVAPQGKERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSRV 889 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 N+RV+E+L+ GA D R L+ S+ +YA N F +++ Sbjct: 890 NKRVVEALIKGGAFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTNE 949 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 L + R +E+ LGFY SGH D + +R+ + + + + L Sbjct: 950 PDLVATEAWSIKERLTHEKAALGFYLSGHLFDECETEVRQFARRRIADLLDSREPQ--LL 1007 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 A +V + ++G R+ + ++ EA Sbjct: 1008 AGIVTELRVVNGQRG-RVAIFKLDDKSETIEAV 1039 >gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 1474 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 330/1099 (30%), Positives = 531/1099 (48%), Gaps = 92/1099 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59 F HL HS +S+L+ +S+ ++D ++ PA+A+TD N+ A F Sbjct: 259 FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318 Query: 60 ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 Q+ G I+PI+GC+ I + K+ +V L GY Sbjct: 319 TKNQELIDNGEAPTETIIKPIVGCEFFICED------HLDKSRKDNGYQVVFLAKNKNGY 372 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y RI +++ E +I+L+G G I AE+ Sbjct: 373 HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FG+ Y+ + RH D R +V LA H + ++ TNN+ ++++ D AH Sbjct: 431 ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 D+L+ V +S L N+ ++ + + E I+ Sbjct: 491 DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSAPEMKKVFADLPEAIVNIQEIIDKV 550 Query: 289 API---------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 + E D ++ E L + G E R A+ Sbjct: 551 EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D R+RLDFEL I + + GYFLIV DFI A+ + VGPGRGS AGS AY L IT Sbjct: 604 TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 664 NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGASQVAQIITYGTMA 723 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501 AK++++D R L +P ++ + + KLIPN + + + Sbjct: 724 AKSSIKDTARVLDLPLAEANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 ++ ++ LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 784 ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620 +E AGL+K DFLGLKTLTL++ ++ + R D P DD TY L T+G+ Sbjct: 844 VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G E IV + Sbjct: 904 FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK K +DK K +F++ A + G Sbjct: 964 YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVAQAVEKG 1023 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + + I+ FA Y FNKSH+ YA ++YQTA++K H+P E++AA ++ M++++ Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859 ++ F ++ R+ ++++ P VN F V D I + + A+KGVG I++ Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911 P+ S+ D R+D + N++ ESL +AG D F R Q L+ K+ Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKDTHRAQYFHVDGDNSTGLEKAVKF 1203 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 Q ++N ++ ++F + L + + E+ V+G Y + HPLD Y Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263 Query: 972 KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013 K ++ E I+ + + ++ + + ++ G Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 G + + + +E F Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342 >gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501] gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501] Length = 1131 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 403/1019 (39%), Positives = 580/1019 (56%), Gaps = 55/1019 (5%) Query: 51 NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 N+ S ++F + A AGI+PI G + + D + + LL +GY+ Sbjct: 3 NMCSLVKFYKTAQGAGIKPICGADIWLAGCDE----------DGPLSRLTLLAMNPKGYR 52 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L EL+SR + Q V I W++E EGLI L+G G I A +A R Sbjct: 53 NLTELISRGWTEGQRNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASR 111 Query: 171 LLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 L ++++F DR Y+ +QR +R D V LA PLVATN+ FL +ED+EAH+ Sbjct: 112 LAEWREVFADRFYLEVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHE 171 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + + + RPR + YLK EM +F+DLPEALENTVEIA+RC+ +Q+ Sbjct: 172 TRVCIGEGRTLDDPRRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLG 231 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFE 344 LP F E I ++ LR + GLE RL + Q Y RL+FE Sbjct: 232 TYFLPNFPVPEGMTI----DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFE 287 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 L I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLF Sbjct: 288 LGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLF 347 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPDFD+DFC D RD VI YV YG V+QIITFG++ AKA +RDV R Sbjct: 348 ERFLNPERISMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARV 407 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 Y DRL K+IP + + ++ R+ D + E++ KLEG+ R Sbjct: 408 QGKSYGLADRLSKMIPFEVGMTLEKAYEMEEP-LRDFLAVDEDAREIWEMALKLEGITRG 466 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA G+VI L+ P+ D VTQF+ +E+AGL+KFDFLGL+TLT+++ Sbjct: 467 TGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKW 526 Query: 585 SLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L+ + + V++ IP DD TY LL T +FQLES GM++ ++ ++PDC Sbjct: 527 ALETINREQAKKGLEPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDC 586 Query: 640 IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQ 692 +ED+IALV+L+RPGP+ + + + NRK+G+ ++ HP ++P+LK T G+I+YQ Sbjct: 587 LEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQ 646 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVMQIAQ+++GY+L AD+LRRAMGKK EEM KQ+ FI G + NGI +A NIF+L Sbjct: 647 EQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDL 706 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + KFA YGFNKSH+AAY ++SYQTAW+K H+P F+AA ++ +M N +K+ ++ R Sbjct: 707 VEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSM 766 Query: 813 NIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 ++I PP VN F V D RI Y L A+KGVG I E A+ PF L DFC+ Sbjct: 767 KLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVGEGPVDAIAECRAEGGPFKDLFDFCA 826 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWV 915 R+D K++N+R LE+L+ +GALD G +R LL +++ + A+ Sbjct: 827 RIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQT 886 Query: 916 EKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 ++ + H ++F + + R + E+ LG Y +GHP+D Y+ Sbjct: 887 ARSAESGHMDLFGGLFAEPEADVYGNHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEG 946 Query: 974 ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +R+ + + +A ++V+ + K +KG ++G++T + + EA+ F Sbjct: 947 EIRRFARQRIIDLRPARGEQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1003 >gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 1436 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 349/1068 (32%), Positives = 557/1068 (52%), Gaps = 61/1068 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL HS +S+L+ ++ +++ A+ + PA+AITD NL A F + A Sbjct: 253 FVHLHNHSQFSVLQATSRISQLVEATASYKMPAVAITDHANLMGAFHFIKAIKAHNKDLE 312 Query: 67 ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+PIIGC+ + + ++ +V L +GY L ++ S Y + Sbjct: 313 EAQQIKPIIGCEFYVCDD------HTDRSRRDDGYQMVFLAKNKKGYHNLAKMTSMAY-V 365 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + RI +++ E LI+L+G G + + AE+ L + F + Sbjct: 366 NGFYYVPRIDREIVKQY-KEDLIVLSGNMYGELASKILNLGDRQAEEALQWWYSEFKEDF 424 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L RH R + +V+LA +++PL+ATNN+ + +E+ AHD+L+ V + Sbjct: 425 YIELMRHGEEGEDRANAVLVKLALQYDIPLIATNNTYYTKKEEANAHDILLCVKEGEKQA 484 Query: 242 QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++Y K+ EM ++F+D+PEA+ N + + +LP+ Sbjct: 485 TPIGRGRGFRYGFPNHEYYYKSPEEMKALFADIPEAITNIGALIDKIESFDLAREVLLPK 544 Query: 295 FIEKECD------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 F E D +K E L G E G +++ ++R+DFEL VI Sbjct: 545 FEIPESYQIHEDSDGKKGENKYLHYLTYQGAEK-------RYGTLSEEIKERIDFELGVI 597 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 A+ + GYFLIV D I A+ ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL Sbjct: 598 AKTGYPGYFLIVQDLIAAARDLDVSVGPGRGSAAGSVVAYCLKITNIDPIKYDLLFERFL 657 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NPDR+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+++RD R L +P Sbjct: 658 NPDRVSMPDIDIDFDDEGRSKVMDYVIKKYGSNQVAQIITYGTMAAKSSIRDTARVLDLP 717 Query: 469 YSQVDRLCKLIPN------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + DR+ KL+PN + + + + + D ++ + Sbjct: 718 LGEADRIAKLLPNIKLAKLFSSSDKELKETLRNDEVLRVNEIKNLADEDSLSGETIQQAI 777 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEG R+ THA G++I ++Q VP+ SDL VTQF+ +E AGL+K DFLGL Sbjct: 778 VLEGSLRNTGTHACGVIITPDDITQFVPVATAKDSDLYVTQFDNSVVEDAGLLKMDFLGL 837 Query: 577 KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 KTLTL++ ++ + + + +D P DD +TY L T+GIFQ ES+GM++ L+ + Sbjct: 838 KTLTLIKDTVKLVKYKHNIDLDPDTFPLDDEKTYELFQRGDTVGIFQYESAGMQKYLKDL 897 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +P D+IA+ +LYRPGP++ I + +RKNG E+I P++ L+ET G+ +YQEQV Sbjct: 898 KPTVFADLIAMNALYRPGPLEYIPSFVDRKNGNEEISYDLPVMAEYLEETYGITVYQEQV 957 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M ++Q L+G+S +ADVLR+AMGKKI + K K +FI G NG + I I++ Sbjct: 958 MLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLKPQFIEGGKNNGHPEEILEKIWKDWEA 1017 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSH+ YA+I YQTA++K HYP E++AA ++ M +++++ F ++ R+ + Sbjct: 1018 FAAYAFNKSHSTCYALIGYQTAYLKAHYPAEYMAAVLSNNMSDIKQVTFFMEECRRLGLN 1077 Query: 816 IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 ++ P VN F V D I + + AIKGVG I+E D+ ++S+ D R+D Sbjct: 1078 VLGPDVNESFYKFAVNDQQAIRFGMGAIKGVGKGAVDTIIEHRKDQRYESIFDLVKRIDL 1137 Query: 875 KKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENI 926 + N++ E+L AG D F R Q L+ + ++ ++N + ++ Sbjct: 1138 RAANKKAFENLALAGGFDSFLNVKRAQYFNPDGDGVTFLEKVLRFGSKYQENLNSSQTSL 1197 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 F E + +T+ + +R + E+ V+G Y S HPLD + + + Sbjct: 1198 FGEETNSTYQDLTIPDCEAWTNLIRLKKEKEVVGIYISSHPLDDFTHEIEHFVTLSLNQL 1257 Query: 987 VATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A + + +V Q ++R G + + +YE F Sbjct: 1258 GALDQLVNREFSIGGIVNEIQHLESRNGKGWARFIVEDFSDQYEFRIF 1305 >gi|206895524|ref|YP_002247456.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM 5265] gi|206738141|gb|ACI17219.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM 5265] Length = 1128 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 394/1039 (37%), Positives = 582/1039 (56%), Gaps = 56/1039 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VHS+YSLL+G ++ + PAIAITD + +EF +A Sbjct: 1 MANQ--FVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQR 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+G + +D K +VLLV A G++ L L+++ YL + Sbjct: 59 LGIKPIVGVEGYQAQRDRKKRE---GNKDKEPFHLVLLVKNALGFRNLNILLTKAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R L++ EGLI + +G I RA + A + ++ +FG Y Sbjct: 115 FYYRPRFDWELLEQYH-EGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFY 173 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + H D+ R +V+L+ +PL+ TN+ + E+Y DVLMA+A ++ Sbjct: 174 LEIMDHNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLND 233 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R + T YLK+ EM FS+ PEAL N++ IA F+L + LP+F E Sbjct: 234 PNRFKYETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEG- 292 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E + LR GL R +++ R+++EL+VI +M F+GYFLIV Sbjct: 293 ---YTENSYLRKLTQDGLLKRYGDN------PSKEVLDRMEYELSVIEKMGFAGYFLIVQ 343 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D+I WAK IPVGPGRGS AGS+ AY ITD+DPL++ LLFERFLNP+R+SMPD D+D Sbjct: 344 DYINWAKSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVD 403 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RRDEV+RYV+NKYG E VAQI TFG+L A+AA+RDVGR L +P + VDRL K IP Sbjct: 404 FCARRRDEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQ 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + L + +P + R+LEI++++EGL RHASTHAAG+VI D+PL + Sbjct: 464 NM----ELAHAEKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYE 519 Query: 542 LVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 V + TQ +EK GL+K DFLGL+ +T++ +L ++ +R + VDL Sbjct: 520 YVALQASSDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGIDVDL 579 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + + DD + Y +L+ T+ +FQLESSG R L+ ++P E+IIA +LYRPG + + Sbjct: 580 NKLSKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSG 639 Query: 659 VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 V Y +RK+G+E + H + P+L+ET G+I+YQEQ+MQIA +++GYSL EADVLRRA Sbjct: 640 GVKSYVDRKHGREPVDYFHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRRA 699 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 + KK +EE+ K +E F+S + G ++ I+E + FA+YGFNKSH+AAYA ++Y T Sbjct: 700 ISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYYT 759 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835 AW+K++YP E+ AA + +DN EK+K + +AR+ I+I+PP VN F +N I Sbjct: 760 AWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENEI 819 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L IK VG I++ A PF S +DF RV+ + +N++V ESL+ AGA D Sbjct: 820 RFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDSL 879 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G R LL+ L + +F + T +D ++L+ Sbjct: 880 G-DRKSLLRQLSTGITT------------QTLF-QIEDTSNDDLSLDPMED--------- 916 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ LG Y + HPL+ Y IL + +SV I G +++ V S + +K+R ++ Sbjct: 917 EREYLGLYITTHPLERYMAILSNQNLTAL-DSVGEIDG-LVQVGGFVSSTRVRKSRNNNQ 974 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 T + + E P Sbjct: 975 YMTFTLEDLTSQVEVTVLP 993 >gi|255034240|ref|YP_003084861.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] gi|254946996|gb|ACT91696.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] Length = 1216 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 344/1096 (31%), Positives = 550/1096 (50%), Gaps = 85/1096 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL H+ +SLL+GA + + K D PA+AITD N+F EF + GI+PI Sbjct: 3 FSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+ + +++ + K +LL GY+ L+++ S ++ + R Sbjct: 63 VGCEFYVVEDRHVRQFTKDKK--DVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPR 120 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + + +GLI T I + + AE+ + LFGD YV LQRH Sbjct: 121 IDKDLIVQYH-KGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHD 179 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK------ 243 D+Y +++ A + + ++ +N+S ++ +D+ AHD+L+ + S Sbjct: 180 IRDQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFD 239 Query: 244 ---------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 Y K SEM+ +F+DLPE+L+NT EI + + +LP Sbjct: 240 DEKGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPN 299 Query: 295 FIEKECDDIQKEEE---------------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 F + E LR+ G + + Sbjct: 300 FPIPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARK-------KYDVVTPEIEE 352 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RL+FEL I M F GYFLIVADFI +K + +GPGRGS AGS AYA+ IT+IDP++ Sbjct: 353 RLNFELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVK 412 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNPDR+SMPD D DF D R +VI YV KYG+ +VAQI+T+G++ AK+A++ Sbjct: 413 YDLLFERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIK 472 Query: 460 DVGRALQMPYSQVDRLCKLIPNDP----------------------AHPVSLQAIADDSR 497 DV R + +P + L KL+P+ P +S + + R Sbjct: 473 DVARVMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKR 532 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 R + + +L+ +++LEG R+ HAAGI+I L++++P+ SD +TQ Sbjct: 533 MRAIAVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQ 592 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616 + K IE AG+IK DFLGL+ L++++++L + + + +P DD + + L Sbjct: 593 YQGKIIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHDIVIDDVPLDDPKVFELFQRGE 652 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T IFQ ES GM++ + + PD E +IA+ +LYRPGPI I + RKNG+E++ P Sbjct: 653 TNAIFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGQEEVTYDLP 712 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 ++ L +T G+ +YQEQVM ++Q L+G++ +AD LR+AMGKK E ++K K F+ G Sbjct: 713 ELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDFMKGG 772 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 ++ G+ I+ FA Y FNKSH+ YA ++YQTA++K HYP E++AA +T + Sbjct: 773 TEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLTSSL 832 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855 +++KI F ++ + ++ ++ P +N F V I + LA +KG G I+E Sbjct: 833 GSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVESIIE 892 Query: 856 AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------L 905 PF + DF +RV+ + +N++ LESL +AGA DCF Y R Q + + Sbjct: 893 ERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGENGTFI 952 Query: 906 DNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 + + +YA +++ ++F + G+ K + + EQ V+GFY Sbjct: 953 EKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVVGFYI 1012 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLAAMVVSKQQKKTRKGSRI 1015 SGHPLD ++ L ++ + G I +A +V S Q++ ++ GS Sbjct: 1013 SGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKNGSLF 1072 Query: 1016 GWVTFSEPAKEYEANF 1031 + E Sbjct: 1073 MIFKIEDYQGAMEMLI 1088 >gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN] gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN] Length = 1198 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 409/1062 (38%), Positives = 594/1062 (55%), Gaps = 55/1062 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P FVHL++H+ +S+++G ++++ A D QPA+AITD NNLF A++F ++A Sbjct: 13 TMEPMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGK 72 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PI+G ++ ++ + +++LV +GY L EL++R + + Sbjct: 73 GVKPILGAEIFLEGE-----------AGAAPSRMLVLVQGRQGYLNLSELLARAWTRNVV 121 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 K WLQE+G EGLI + G +GP+ +A A L +F R Y+ Sbjct: 122 KAQAICTWDWLQELG-EGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIE 180 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 +QR R D VQLA LP+VAT+ F + +DYEAH+ + +A ++ + Sbjct: 181 VQRAGRADDEAHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQR 240 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R T + Y K+ ++M ++F+DLP AL N+VEIARRC+ L + P LP F + Sbjct: 241 RVRKFTREQYFKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQ 300 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 ++ R+ + GLE RL + Y +RL+FEL I +M F GYFLIV Sbjct: 301 VLSVDDYFRHVSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIV 360 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFIQWAK + PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDI Sbjct: 361 GDFIQWAKTHGCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDI 420 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P Sbjct: 421 DFCQSNRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVP 480 Query: 481 NDPAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 P + A+ + E + V ++E++QKLEG+ R+ Sbjct: 481 GKPGMSYTLQYPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIG 540 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA G++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + Sbjct: 541 MHAGGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAR 600 Query: 587 DFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +F+ +R IP DD TY L + T +FQ ES GM+ L +P +ED+ Sbjct: 601 EFIMKRHKGQENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDL 660 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IAL +LYRPGP+D I + NRK+GKE + HPL++P+L ET G+++YQEQVMQ AQ+L Sbjct: 661 IALNALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLG 720 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK EEM + + F GA++ GIS+ A +F+L+ KFA YGFNK Sbjct: 721 GYSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNK 780 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN 822 SHAAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA++ + PP VN Sbjct: 781 SHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVN 840 Query: 823 TPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSR 871 F+ V D I Y L A+KG G I+ A PF SL DFC R Sbjct: 841 RGMYRFEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVR 900 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928 VD +LN+R +E+L+ AGA D +R ++ S+D +A N +F Sbjct: 901 VDRARLNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANV--NQGGLFDMMG 958 Query: 929 -HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 G+ + + L R E+ +GFY SGH D +R+ +E + Sbjct: 959 EDAHGSSTQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFDEVAQEVRRFVRTQIDELL 1018 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + LA ++ + ++G G + + EA Sbjct: 1019 DSREPQ--ILAGIISDFRVINGQRGKL-GLFRLDDKSGVIEA 1057 >gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM 15606] gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM 15606] Length = 1235 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 354/1116 (31%), Positives = 549/1116 (49%), Gaps = 103/1116 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 F+HL VH+ YS+L+G ++ ++DK + +A+TD +F EF+ Sbjct: 3 DFIHLHVHTYYSILDGQSKISRLVDKAVENGMKGMALTDHGVMFGIKEFADYCAGVNKKR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G+ +PI GC++ + + + +++L GY+ LI+LVS+ Sbjct: 63 KAEGLEPFKPIFGCEMYVAHHRLHDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSKS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ D R + L++ E LI+ + +G + + A + + ++FG Sbjct: 121 WI-DGYYYRPRTDRTELEKYH-EDLIVCSACIAGEVPSKIIKGDLEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + ++ TN+ F +E E Sbjct: 179 DDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + +R R + + K+R EM +FSD+PEAL NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPNRMRYSKQEWFKSREEMNEVFSDVPEALTNTLEILNKVEHYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++E Sbjct: 299 EHGPIMPFFPIPESFGTEEEWKLKFSEADLYKEFTSDENGENQLSPEEGQKVIERLGGYD 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G + + ++ ++FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAHDGAKKLYGDP------IPSNVQEHINFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAARTELDVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLDKSNFLCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREARLADP-SVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI R+A ++ ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGLKMNLTNAIKCTPELRDAEVSQDLRERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRDPISNWVPVSTADDPDYPGFKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + DL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ + Sbjct: 653 KKTKNIDVDLDTIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN ++ P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPTQVSYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI ++NG I I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDAMKPKFIKQGTENGHDPKILEKIWGDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA+MK H+P E++AA MT + +I K ++ + I + P VN +F Sbjct: 833 YSWVAYQTAYMKAHFPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+G A+ I++ A+ PF + DF R+D +NR+ ESL Sbjct: 893 GVNKRGEIRFGLSAIKGMGEMAAQSIVKEREANGPFKDIYDFAQRIDFSNVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D F Y R Q LD + +Y Q ++ + ++F E + Sbjct: 953 LSGGFDGFEYRREQYFAPGMKGDVFLDTLVRYGQLYQQEQREARNSLFGGESAVEISRPI 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996 KF ++ R E+ ++G Y S HPLD Y IL+ + E ++ I Sbjct: 1013 PGKFEEWSTIERLNRERDLVGIYLSAHPLDEYGVILKSLCNTHCTELDKKEELVKKEEIS 1072 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +V + K T+ G G+VT + E FF Sbjct: 1073 IGGIVTGVKSKFTKTGKPCGFVTIEDFEGSGELAFF 1108 >gi|15616854|ref|NP_240067.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132275|sp|P57332|DPO3A_BUCAI RecName: Full=DNA polymerase III subunit alpha gi|25288552|pir||A84958 DNA-directed DNA polymerase (EC 2.7.7.7) alpha chain [imported] - Buchnera sp. (strain APS) gi|10038918|dbj|BAB12953.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 1161 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 614/1049 (58%), Gaps = 41/1049 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G Sbjct: 2 NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG ++ + + LL ST EGY+ LI L+SR Y Sbjct: 62 LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111 Query: 127 QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + V I W EI +GLI+L+GG G + + S + L ++K F D Y+ Sbjct: 112 NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243 L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ + K Sbjct: 171 LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + + +LK EM +FSD+PEAL N+VEIA+RC+ + ++ + Sbjct: 231 IQNNYSNQQFLKTTEEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360 + E L +A G++ RL + + Y Q RLD EL VI +M F GYFLIV Sbjct: 286 KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI Sbjct: 346 MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L KL+P Sbjct: 406 DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +S + V L++I++KLEG R+ HA G+VI ++ Sbjct: 466 LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595 P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + Sbjct: 525 DFCPLYCDEKGNNPVTQFDKNDIEYIGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++++ IP DD + + LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 ININSIPLDDAKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644 Query: 656 DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L Sbjct: 645 QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH+ A Sbjct: 705 SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N +F Sbjct: 765 YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y L AIKG+G + + +++ + F L D C R+DS+K+ RRVLE L+ Sbjct: 825 YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 +G+ DCF +R LLQS+D+ ++ + ++ K +++F + + K L Sbjct: 885 MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + +NE +VLGFY +GHP++ YK L + + R I +A ++VS Sbjct: 944 VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ +RI + + E F Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3] gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3] Length = 1267 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 366/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65 F+HL VH+ YSLL+G S++ ++DK D AIA+TD +F EF K Sbjct: 4 FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63 Query: 66 GI----------------------------------------QPIIGCQLDIDMQDNLKM 85 GI +PIIGC+ Sbjct: 64 GIIKDSEKELKPLLTKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145 + +++L GY+ LI++VS + + RI L++ + LI Sbjct: 124 LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYHKD-LI 179 Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194 + + G I + AE+ + FK LFG+ Y+ +QRH +D + Sbjct: 180 ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254 +++LA+ H + L+ATN+ F++ +D EAHD L+ ++ + R R + ++ Sbjct: 240 EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306 K +EM +IF+D+PEAL NT+EIA + F PI+P F E ++ Sbjct: 300 KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359 Query: 307 ---------------------------------------EENELRNKAVAGLEVRLAQGA 327 E + L G + Sbjct: 360 DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386 + ++RL+FEL+++ M F GYFLIV DFI+ A++ + VGPGRGS AGS Sbjct: 420 ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD D DF D R EV+R+V KYG ERVA I Sbjct: 474 AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503 IT+G++ K+A++DV R ++P S+ +RL KL+P D AI +EA Sbjct: 534 ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558 DP L+ +Q LEG R+ HA G++IG +S +VP+ +D ++ VTQ+ Sbjct: 594 GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + D+ I +D +TY L T Sbjct: 654 EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 G FQ ES+GM++ L+ +QP ED+IA+ +LYRPGP+D I + RK GKE+I P+ Sbjct: 714 TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+ E+M+ K +F++G Sbjct: 774 MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K ++P E++AA ++ + Sbjct: 834 ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856 N+ I KF + + IQ++ P VN + F V N+ I + L A+KGVG + ++I+E Sbjct: 894 NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908 + P+ S+ DF RV+ N++ +ES+ AGA D FG R Q LD + Sbjct: 954 RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGILREQFFTDSGKGELFLDTL 1013 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + +++ ++F + K + + + R E+ ++G Y S HPL Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073 Query: 969 DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y+ IL+ + G E +G + L +V ++ T+ G G + + Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133 Query: 1027 YEANFF 1032 E F Sbjct: 1134 GEIPLF 1139 >gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera sp. 301] gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera sp. 301] Length = 1169 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 417/1047 (39%), Positives = 611/1047 (58%), Gaps = 41/1047 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K P FVHL+ HS YS+++G + +++ + + D+ PA+A+TD +NLF A++F + A G Sbjct: 10 KQPIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKTARGKG 69 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+GC + ++ ++LL + GY L +L+SR YL +Q + Sbjct: 70 IKPILGCDIWLEN----------TANRDQPTRLLLLCQSHAGYLLLCQLLSRAYLSNQYR 119 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 W E GTEGLIML+G +G + +A ++ +A K +++ LF DR Y+ + Sbjct: 120 GRAEFKREWFVECGTEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDRFYLEV 179 Query: 187 QRHRG--------------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 QR QV +A++ LP+VAT+ F++ +D+ AH+ Sbjct: 180 QRTASVAESSTPESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRAHEART 239 Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 ++ V++ RP+ T + Y K +++M ++F D+PEAL N+VEIA+RC+ +L + Sbjct: 240 CISEGYVLADTRRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLTLGKNY 299 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP F + + + E R + LEV + Y RLDFE VI +M Sbjct: 300 LPNFPTPNNESLNEYLIAEARRGLLQRLEVLYPNEEVRAAKKP-AYDARLDFETKVINQM 358 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F+GYFLIVADFIQWAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPD Sbjct: 359 GFAGYFLIVADFIQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLLFERFLNPD 418 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P+ Sbjct: 419 RVSMPDFDIDFCQEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFYF 478 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD + KLIP + +S A+ + + E R + + LLE++ +LEGL R+ HA G Sbjct: 479 VDGISKLIPLELGITLS-DALVKEPQLAERRENEEELKELLELALRLEGLVRNIGMHAGG 537 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I +S P+Y V+Q++ +E GL+KFDFLGL+TLT+L+ +L + Sbjct: 538 VLISPGKISDFSPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILELALANANK 597 Query: 592 RGVKVDL-----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + L +P +D T+ LL T T +FQLES GM+ L+ PDC EDIIAL Sbjct: 598 QRATEGLAPLSFETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPDCFEDIIAL 657 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+GK+++ HPL +P+LKET G+ +YQEQVMQIAQ+++GYS Sbjct: 658 VALYRPGPMDLIPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYS 717 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEMD Q++ F+ GA+KN +++ A+ +F+LL KFA YGFNKSHA Sbjct: 718 LGGADLLRRAMGKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAGYGFNKSHA 777 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++YQTA++K HYP FLA++M+ +M+N + ++ F +D ++I+ P VN Sbjct: 778 AAYALVAYQTAYLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPNQVKILSPDVNQSEY 837 Query: 827 DFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F + N++ Y L A+KG G I+ D PF L DFC+R+D +K+NRRV+ES Sbjct: 838 KFTPISKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRKVNRRVVES 897 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L+ AGA D SR LL + A+ N + ++F ++ L Sbjct: 898 LIRAGAFDKLSPSRNALLAGVAMAMAAAEQNSAN--SNQNSLFGEVADKAAN--ILPMVP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 R + E+ LGFYFSGHP ++ L + + LA +V Sbjct: 954 DWTEQQRLQEEKAALGFYFSGHPYWAFQKDLSQFISTTLANL--APKEQPQLLAGIVSGV 1011 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + + T +G I V + E Sbjct: 1012 RIRMTGRGK-IAIVGLDDGTTRLEVVV 1037 >gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471295|ref|ZP_05635294.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624452|gb|ACL30607.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 1161 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 615/1049 (58%), Gaps = 41/1049 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G Sbjct: 2 NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG ++ + + LL ST EGY+ LI L+SR Y Sbjct: 62 LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111 Query: 127 QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + V I W EI +GLI+L+GG G + + S + L ++K F D Y+ Sbjct: 112 NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243 L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ + K Sbjct: 171 LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + + +LK EM +FSD+PEAL N+VEIA+RC+ + ++ + Sbjct: 231 IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360 + E L +A G++ RL + + Y Q RLD EL VI +M F GYFLIV Sbjct: 286 KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI Sbjct: 346 MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L KL+P Sbjct: 406 DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +S + V L++I++KLEG R+ HA G+VI ++ Sbjct: 466 LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595 P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + Sbjct: 525 DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644 Query: 656 DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L Sbjct: 645 QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH+ A Sbjct: 705 SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N +F Sbjct: 765 YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y L AIKG+G + + +++ + F L D C R+DS+K+ RRVLE L+ Sbjct: 825 YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 +G+ DCF +R LLQS+D+ ++ + ++ K +++F + + K L Sbjct: 885 MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + +NE +VLGFY +GHP++ YK L + + R I +A ++VS Sbjct: 944 VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIRRNKKILVAGIIVS 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ +RI + + E F Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|111223805|ref|YP_714599.1| DNA polymerase III subunit alpha [Frankia alni ACN14a] gi|111151337|emb|CAJ63049.1| DNA polymerase III alpha subunit [Frankia alni ACN14a] Length = 1177 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 357/1067 (33%), Positives = 562/1067 (52%), Gaps = 49/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL VH+ YS+L+GA L ++ +++ Q PA+AITD ++ A +F ++A A Sbjct: 1 MSNS--FVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIGC+ + + L + + + + A+G + L Sbjct: 59 AGVKPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFR 118 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L SR + + R+ + E +GL+ TG SG + A + T+ Sbjct: 119 LNSRASIEGHYIKWPRMDQEIIAE-HADGLMATTGCPSGIVQTRLRLGQYDAALQAAATY 177 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG + + + H +R +V +A ++ V TN+S + E + +AH L+ Sbjct: 178 QEIFGKENFFCEIMDHGLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALL 237 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V ++ V+ ++LK+ EM I D + + E + + Sbjct: 238 CVQTASTVANPSFQFEGSGYFLKSAEEMYGI--DSSDIWQEGCETTLLIAERVDPTGMFA 295 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + EE+ R + AG++ R QG ++R+R+++E+ VI +M Sbjct: 296 KHNLMPRFPVPDGETEESWFRAETWAGMDRRFPQGFD------DEHRERVEYEIRVILQM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK IPVGPGRGS AGS+ A+AL ITD+DP+ SLLFERFLNP+ Sbjct: 350 GFPSYFLVVADFIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR +VIRYV ++G +R+AQI+TFG+++AKAA++D R L PY+ Sbjct: 410 RVSMPDIDIDFDERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYAV 469 Query: 472 VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P + ++ R +D V +++E ++ LEGL Sbjct: 470 GDRITKAMPPAVMGKDIPLGGIFDPKHPRFSEAGEIRGLYESDADVKKVIETAKGLEGLI 529 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R A HAAG+++ P+ +P++R +TQF+ E GL+K DFLGL+ LT++ Sbjct: 530 RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589 Query: 583 QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ A RG+ +DL + DD Y LL TLG+FQL+ MR L M+PD E Sbjct: 590 DDAVRNVEANRGITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMRPDNFE 649 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695 DI A+++LYRPGP+ ++ + Y RKNG+++I IHP + +L T G+I+YQEQV Sbjct: 650 DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIVYQEQV 709 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++GYSL AD+LRRAMGKK KE +DK+ F G +G S+ ++++L Sbjct: 710 MAIAQKVAGYSLGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLWDILVP 769 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 F+DY FNK+H A Y ++SY TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 770 FSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829 Query: 816 IMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873 ++PP VN+ D+ I LAAI+ VGT I+ K F S DF +VD Sbjct: 830 VLPPDVNSSNADYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDFLDKVD 889 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R +ESL+ AGA D G++R L++ + V+K ++FA + Sbjct: 890 AVVCNKRTIESLIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFALDADD 949 Query: 934 FSDKITLEKF-----SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 + + +V+ +E+ +LG Y S HPL + IL Sbjct: 950 DPGAAPVFGVQEFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARADCSIAALTG 1009 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G+ + +A ++ S Q+K T++G T + A E FFP Sbjct: 1010 GEYADGSTVTIAGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFP 1056 >gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 1474 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 331/1099 (30%), Positives = 532/1099 (48%), Gaps = 92/1099 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59 F HL HS +S+L+ +S+ ++D ++ PA+A+TD N+ A F Sbjct: 259 FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318 Query: 60 ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 Q+ G ++PI+GC+ I + K+ +V L GY Sbjct: 319 TKNQELIDNGEAPTETIVKPIVGCEFFICED------HLDKSRKDNGYQVVFLAKNKNGY 372 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y RI +++ E +I+L+G G I AE+ Sbjct: 373 HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FG+ Y+ + RH D R +V LA H + ++ TNN+ ++++ D AH Sbjct: 431 ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 D+L+ V +S L N+ S++ + + E I+ Sbjct: 491 DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSASEMKKVFADLPEAIVNIQEIIDKV 550 Query: 289 API---------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 + E D ++ E L + G E R A+ Sbjct: 551 EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D R+RLDFEL I + + GYFLIV DFI A+ + VGPGRGS AGS AY L IT Sbjct: 604 TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R +V++YV +KYG +VAQIIT+G++ Sbjct: 664 NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGKVMQYVIDKYGASQVAQIITYGTMA 723 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501 AK++++D R L +P S + + KLIPN + + + Sbjct: 724 AKSSIKDTARVLDLPLSDANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 ++ ++ LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 784 ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620 +E AGL+K DFLGLKTLTL++ ++ + R D P DD TY L T+G+ Sbjct: 844 VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G E IV + Sbjct: 904 FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK K +DK K +F+S A + G Sbjct: 964 YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVSQAVEKG 1023 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + + I+ FA Y FNKSH+ YA ++YQTA++K H+P E++AA ++ M++++ Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859 ++ F ++ R+ ++++ P VN F V D I + + A+KGVG I++ Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911 P+ S+ D R+D + N++ ESL +AG D F R Q L+ ++ Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKETHRAQYFHVDGDNSTGLEKAVRF 1203 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 Q ++N ++ ++F + L + + E+ V+G Y + HPLD Y Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263 Query: 972 KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013 K ++ E I+ + + ++ + + ++ G Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 G + + + +E F Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342 >gi|302561148|ref|ZP_07313490.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000] gi|302478766|gb|EFL41859.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000] Length = 1179 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 338/1067 (31%), Positives = 533/1067 (49%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEAVAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + Y S D +A + R + ++ Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQQGCANTRLIAEMVDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + + G+E R G +D +++ D+E++VI +M Sbjct: 298 KRDLMPKFDIPQGYTEVSWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +GV +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKANKGVDLDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKN ++I IH ++ L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLREVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I++ A + S D+ +VD Sbjct: 832 VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRRAKGKYTSFPDYLDKVD 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEA 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S + + + E+ +LG Y S HPL + +L G + Sbjct: 952 ESSEPGFGLDVTFTDDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 1463 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 355/1085 (32%), Positives = 558/1085 (51%), Gaps = 77/1085 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL HS +S+L+ S+ +I+ A + PA+A+TD N+ A F++ + Sbjct: 262 FAHLHNHSQFSILQSTASVQDIVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321 Query: 67 -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 ++ IIGC+ ++ + ++ K+ IV+L GY Sbjct: 322 AENAKLTEAGEAEEHVPLKAIIGCEFNVCVD------HKNKSQKDNGYQIVILAKNKNGY 375 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 Q L ++ S Y D RI +++ E LI+LTG G + + AE+ Sbjct: 376 QNLCKMASIAYT-DGFYYVPRIDKQVIEQY-KEDLIVLTGNLYGEVPSKILNVGEKQAEE 433 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K+ FGD LYV + RH D R ++ L+ H++ L+A+NN+ ++ + D +AH Sbjct: 434 ALIWWKEQFGDDLYVEIMRHGQEDEDRVMPVLITLSRKHDVKLIASNNTFYIDKSDADAH 493 Query: 229 DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 DVL+ V V+ ++Y K+ EM ++F+D+PEA+ N E+ + Sbjct: 494 DVLLCVKDGEKVATPKGRGRGYRFGLPNDEYYFKSADEMKTLFADVPEAILNVQEVVNKI 553 Query: 282 SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 +LP F E D ++ E L++ G + R + Sbjct: 554 ESYELARDVLLPAFDIPEEFVSPEDAIDGGKQGENAFLKHLVYEGAKKRYGE------EL 607 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +++ +RLDFEL+VI + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT Sbjct: 608 SEEVIERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDPL++ LLFERFLNPDR+SMPD DIDF + R V++YV +KYG +VAQIIT+G++ Sbjct: 668 NIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500 AK+++RD RAL + DR+ KLIP + + Sbjct: 728 AKSSIRDTSRALDLSLGDADRIAKLIPTMSKLRKIFGKTDAELRSAFRSDDLPKVQELIT 787 Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 AD ++L +++LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 788 LEQADNLEGQMLRQARQLEGSVRNTGIHACGVIITPSDITNFVPVALAKDSDLYVTQFDN 847 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619 +E+AGL+K DFLGLKTLTL++ ++ + R D P DD +TY L T+G Sbjct: 848 SVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHDVDLDPESFPLDDEKTYELFQRGDTVG 907 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 IFQ ES GM++ ++ ++P ED+IA+ +LYRPGP++ I + RK+G+E+I P ++ Sbjct: 908 IFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAME 967 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LKET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI AS Sbjct: 968 EYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAK 1027 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G I++ FA Y FNKSH+ YA I+YQTA++K HYP E+LAA ++ M+++ Sbjct: 1028 GHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDI 1087 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858 +++ F ++A++ ++++ P VN F V DN + + + A+KGVGT I+E Sbjct: 1088 KQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRK 1147 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS-------LDNIQ 909 D + S+ DF RVD + N++ ESL AG D + R Q L+ Sbjct: 1148 DGNYKSVFDFARRVDLRAANKKAFESLALAGGFDELDRNTHRAQFFNHDGDGITFLEKAV 1207 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 KY ++N + ++F + + + + + E+ V+G Y SGHPLD Sbjct: 1208 KYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLD 1267 Query: 970 VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +K + + ++ Q + ++ G T + + Sbjct: 1268 DFKTEMETFCNATVAHFSQMESFINRELTFGGVISDVQHRVSKNGKGWAAFTVEDFTDTF 1327 Query: 1028 EANFF 1032 E F Sbjct: 1328 EFRMF 1332 >gi|187250629|ref|YP_001875111.1| DNA polymerase III subunit alpha [Elusimicrobium minutum Pei191] gi|186970789|gb|ACC97774.1| DNA polymerase III, alpha subunit [Elusimicrobium minutum Pei191] Length = 1167 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 375/1051 (35%), Positives = 604/1051 (57%), Gaps = 48/1051 (4%) Query: 11 FVHLQVHSSYSLLEGALS-----LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 FVHL HS YSLL+G L + L ++AAD A+AITD N++ A++F + A AA Sbjct: 3 FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIGC+ I + + + LL EGYQ L+ L+S+ +L D Sbjct: 63 GIKPIIGCEAYITNGSHKNK----EKGLDKTFHLTLLAKDYEGYQNLMALISKAWL-DGF 117 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI L + +G++ L+G G + + + A + T++ + G Y+ Sbjct: 118 YYHPRIDKDILAQ-HAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYI 176 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L H + ++++++ + +P+VATN+ + +ED++AHD+ M ++ + Sbjct: 177 ELMDHGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDP 236 Query: 244 DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R + + Y K+ EM +FS +PEA+ NT+E+A +C+ ++ +LP F Sbjct: 237 NRLKSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVFDIP---P 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + ++ ++N GL +++ G +Y++RLD+EL VI +M FS YFLIVAD Sbjct: 294 SFSDTDSYIKNLCQEGLAKKMS------GIIPPNYQERLDYELGVIGKMGFSSYFLIVAD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI +A++N+IPVGPGRGSGAGS+ AY+L IT +DP++ LLFERFLNPDR+SMPD DIDF Sbjct: 348 FIDYARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDF 407 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 + R++VI YV+NKYG VAQIITFG+++AK A++DV R L +P S+ +R+ KLIPND Sbjct: 408 SDEGREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPND 467 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + AI ++ ++P +L + ++KLEGL RHA HAAGIV+ +S+ Sbjct: 468 LGTTID-SAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKY 526 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601 P+ R + + + GL+K DFLGL+TLT++ ++D + RG+ +D+ I Sbjct: 527 APLARGSKEAITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGIDIDIDNI 586 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P D+ +TY LL++ TLGIFQLES GMR ++ ++P DI ALV+LYRPGP+++ ++ Sbjct: 587 PLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGMLE 646 Query: 661 -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK G+EKI PL++P+LKET G ++YQEQ+M++++LL G++ +AD LR+AMGK Sbjct: 647 SFVRRKAGQEKITYDTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSLRKAMGK 706 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 K +EM+K + F++G + I+ A IFE ++KFA YGFNKSH+ AYA++SYQTA++ Sbjct: 707 KKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVSYQTAYL 766 Query: 780 KTHYPVEFLAASMTLEMDN--------VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 K +YP+EF+ + +T E+ + KI + ++A++ + + P VN +F + Sbjct: 767 KANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSKENFSIE 826 Query: 832 D----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I + L A+K VGT A I+ A D+P+ +D R+D K N++ +ESL+ Sbjct: 827 EVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCGFQDLLERIDLKASNKKTIESLIK 886 Query: 888 AGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKI 938 AGALD +R +L ++++ + +++ + + ++F + F K Sbjct: 887 AGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAFVSVKKKE 946 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 T E E+ VLGFY SGHPL YK + K+ EE + + Sbjct: 947 TKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKSVTIEEINENNIKGAVNIL 1006 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 ++ ++++ ++ + + A Sbjct: 1007 GIITRVKKRQNKRKEDWAQFIIEDETGQMSA 1037 >gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC 33269] gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC 33269] Length = 1235 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 368/1110 (33%), Positives = 549/1110 (49%), Gaps = 91/1110 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 +VHL VH+ YS+L+G ++ ++DK AD +A+TD +F EFS Sbjct: 3 DYVHLHVHTYYSILDGQSKISYLVDKAIADGMRGMALTDHGAMFGIKEFSDYCEGVNKKR 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G +PI GC++ + + + + +++L GY+ LI+LVSR Sbjct: 63 KAEGKEPFKPIFGCEMYVARRHKEDKEK--DSGDKSGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L+ E LI+ + +G + + A K L +K++FG Sbjct: 121 W-VDGYYYRPRTDHDDLERYH-EDLIVCSACIAGEVPSKILKGDIEGARKSLEWYKRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ LQRH D +++ A + + L+ TN+ F +E E Sbjct: 179 EDFYLELQRHEVKDPSLIANRTTYPLQEKVNKILIEFAKEYGIKLICTNDVHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + +R R T + K R+EM +F D+PE L NT+EI + Sbjct: 239 AHDHLLCISTQADLDDPNRMRYTKQEWFKTRAEMNEVFYDMPEVLSNTLEILDKVEIYSI 298 Query: 287 VHAPILPRFIEK--------------------------ECDDIQKEEENELRNKAVAGLE 320 H PI+P F +++ EE ELR + + G + Sbjct: 299 GHDPIMPFFPIPEDFGTEELWRQKFTKEDLYKEFCSDENGENMMSPEEGELRIRHLGGYD 358 Query: 321 VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A Q+ +R+ FEL+V+ M F GYFLIV DFI Sbjct: 359 KIYRIKFEADYLAKLAYDGAKKVYGSPMPQEVIERVKFELHVMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF Sbjct: 419 AARNELEVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK IP+ Sbjct: 479 DGRGRVLQWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLEKSNALCKAIPDRLP 538 Query: 485 HPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI +EA DP ++ ++ LEG R HA G +I P+S Sbjct: 539 DGMKMNLTNAIYCTPELKEAEASTDPRERNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598 Query: 541 QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 VP+ D PVTQ++ IE GLIK DFLGLKTL+ L++++ + G+ Sbjct: 599 NWVPVSTADDPDFKDKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEAVKDVKISLGI 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VDL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 EVDLDHIPLDDELTYKLYQEGRTIGTFQFESPGMQKHLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+G++ E+D LR Sbjct: 719 MDYIPDFIRRKHDSSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAGFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI G K G + I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDAMKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA+MK HYP E++AA MT ++++I K + + NI + P VN ++F V Sbjct: 839 QTAYMKAHYPAEYMAAIMTRRRSDIKEITKLMDECKSMNIATLGPDVNESYLEFGVNKKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A I++ + + + DF RVD +NR+ ESL +G D Sbjct: 899 EIRFGLAAIKGMGDAAAEAIIKEREKNGIYKDIFDFAQRVDFSYVNRKAFESLAVSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R Q L LD + +Y Q + +T ++F + + Sbjct: 959 DFGLRREQYLGVNTKGDMFLDTLVRYGQMYQAGQTEAQNSLFGDADAIEIATPPIPQGEE 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002 ++ R E+ ++G Y S HPLD + IL M E + N I + +V Sbjct: 1019 WSTIERLNRERELVGIYLSAHPLDDFSIILNSMCNTHCSELDNKAELAKKNEITIGGIVT 1078 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ G G+VT + E FF Sbjct: 1079 GVKSKFTKTGKPCGFVTIEDYEGSGELAFF 1108 >gi|29832685|ref|NP_827319.1| DNA polymerase III subunit alpha [Streptomyces avermitilis MA-4680] gi|29609805|dbj|BAC73854.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis MA-4680] Length = 1179 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 531/1067 (49%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L + Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAAEY 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QEIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + + Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + D E + + G+E R G D +++ ++E++VI +M Sbjct: 298 AKNLMPKFDIPEGFTEVTWFQEEVRRGMERRFPGGV------PDDRQKQAEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKSNKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG ++I IH ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F GA K G S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++A +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP VN +F GD+ I + L+A++ VGT I+++ + S D+ +V+ Sbjct: 832 VLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVACNKRTTESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 SD+ + E+ +LG Y S HPL + +L G + Sbjct: 952 ESDEPGFGLDVVFTDDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|294790529|ref|ZP_06755687.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304] gi|294458426|gb|EFG26779.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304] Length = 1187 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 336/1074 (31%), Positives = 545/1074 (50%), Gaps = 56/1074 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL H+ YS L+GA+ + ++ + Q A+ ITD N+ A E + A Sbjct: 1 MTSSSDFVHLHNHTDYSTLDGAVPVKKLVQVVKDQGQKAVGITDHGNMHGAYELWRTAVD 60 Query: 65 AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 GI+PIIG + I + + + + L +G L+ Sbjct: 61 QGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHADDVSANGSYTHMTLWAQNDQGLVNLL 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 + S L ++ R+ L +G+I TG SG + + A + Sbjct: 121 KASSVANLEGLMGRNPRMDRDVLNTYH-QGIIATTGCPSGAVQTRLRLGQYEQALREARE 179 Query: 174 FKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + ++G + YV + H ++ + ++++A PLVATN+S + EED +A D L Sbjct: 180 LQDIYGKENFYVEIMDHGLTIEKRVINDLIRIADNIGAPLVATNDSHYGLEEDAKAQDAL 239 Query: 232 MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + + + ++ +R +Y+K+ +M +F D P+A +NT+EIA RC+ + H Sbjct: 240 LCINSGSRLTDPNRFHFDGSGYYIKSAQQMRELFKDFPQACDNTLEIAERCNVMFDDHED 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 F+ + + + + GLE R G A+ ++ D+E VI + Sbjct: 300 GA--FMPEFDCPQGWDATSLFLHDVEQGLERRYPDGVPAQ------VARQADYECGVICQ 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ +YA+ IT++DPL+ L+FERFLNP Sbjct: 352 MQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVSYAMGITELDPLKHGLIFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+S+PD D+DF R++V++YV +KYG ++VAQ +T+G+++ K AL+D R L + Sbjct: 412 ERVSLPDIDVDFDPAGREKVLQYVTHKYGADKVAQCVTYGTIKTKQALKDSARILDYEFQ 471 Query: 471 QVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLEISQKLEGL 521 + + K +P A+ FR+ +P V ++ E ++ +EGL Sbjct: 472 MGETITKALPGSVGGKDISLHDIFDPHAKRYAEAQEFRDLYNDNPDVQKITEEAKGIEGL 531 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HA ++ +P++ P+ + T F E GL+K DFLGL LT+ Sbjct: 532 IRQTGVHACATIMASQPIANTSPLLKR-TDGTITTTFEYHTCETLGLVKMDFLGLANLTV 590 Query: 582 LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++L+ + VDL IP DD TY LL++ TLG+FQL+S GM+ L+ ++PD Sbjct: 591 IKETLNNIKANGKPAVDLEKIPIDDKPTYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNF 650 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 DI AL++LYRPGP+ D+ Y RKNG ++I IHP ++ L ET G+I+YQEQ Sbjct: 651 NDISALIALYRPGPMDVDSHNNYAKRKNGLQEIKPIHPELEKPLASVLDETYGLIVYQEQ 710 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 V A++L+GYSL ADVLRRAMGKK E + K+K F G ++G S+ A ++++L Sbjct: 711 VQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKVPFFEGMKEHGYSQEAAQAVWDVLV 770 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNK+H+AAY +ISY TA++KTHYPVEF+AA + E N +K + + R+ NI Sbjct: 771 PFAGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGERTNKDKTALYLGECRRMNI 830 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCS 870 Q++PP VN + N I + L A++ VG I+ F S D+ + Sbjct: 831 QVLPPDVNESVSHYSAVGNDIRFGLGAVRNVGDKIVDAIVHEREKSGGKGKFLSFLDWIN 890 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 R+ LN+R +ESL+ GA D +R L + +++ ++FA Sbjct: 891 RMPVSVLNKRTVESLIKGGAFDSIDPNRRALFTIHEAAIDQVVPLKRKEAEGQFDLFADA 950 Query: 931 KGTF--------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 I++ + + + E+ +LG Y S HPL +L + Sbjct: 951 GDPSSSSADALGDANISVPQIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLANLSDMS 1010 Query: 983 YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + N + +AA++ + ++ +++G VT + + FF Sbjct: 1011 IPQLLNKASTMPDRNQVTIAALITAVDRRVSKQGKPWAIVTLEDLEGSIQCLFF 1064 >gi|296125094|ref|YP_003632346.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563] gi|296016910|gb|ADG70147.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563] Length = 1240 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 365/1036 (35%), Positives = 583/1036 (56%), Gaps = 34/1036 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55 SFVHL VH+ YS+L+GA + ++ +D+ + PAIAITD N+F Sbjct: 2 SFVHLHVHTQYSILDGASRIKSLYSKKDKKKRLIPGLIDRAVELEMPAIAITDHGNMFGV 61 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +EF +A GI P+IGC+L + + + + + ++LL EGY L +L Sbjct: 62 MEFFSEAKDKGIIPVIGCELYVAPKTRFDKKIEN-SEEKSAMHLILLAKDKEGYDNLCKL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 V+ Y + R+ +++ +GLI L+ G I A + A K +K Sbjct: 121 VTFGYT-EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178 Query: 176 KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG+ Y+ LQ H + S + +LA H + +V TN+ ++ +ED +AH++L+A+ Sbjct: 179 SIFGNDFYIELQDHNIPEEKSLNSALYKLANHHSIEMVVTNDVHYVLKEDAKAHEILLAI 238 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + R + + + +LK++ EM+ F+ LP+A ENTV+IA +C ++ Sbjct: 239 QTKATLDSPRRYKFPSNEFHLKSKEEMMKSFAKLPKAFENTVKIAEQCR---DLNIMTKT 295 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ + E LRN + GL ++ +RL+ EL VI++M F Sbjct: 296 YYMPNYELPNGETETTALRNMCMEGLNKHYNNN------IPKEAMERLEMELGVISKMGF 349 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP+R Sbjct: 350 EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERK 409 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DF D+R+ +I YV+ KYG + VAQI TFG+L ++ +RDV R + + + D Sbjct: 410 SMPDIDVDFQDDKREVIIDYVKEKYGKDNVAQIATFGALGGRSVIRDVCRVMGIDLATAD 469 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 RL K IPND + V + D + FR+ + + + EIS +L+GL R+ HAAG++ Sbjct: 470 RLAKGIPNDVSRVVDIYDHPDCAEFRKEVESSRELKNMYEISTRLDGLVRNVGLHAAGVI 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I P+ L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + +R Sbjct: 530 ISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAVKDIKERY 589 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 ++D+ IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+LYRP Sbjct: 590 GTEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYRP 649 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+++ + Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +EA Sbjct: 650 GPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAEA 709 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKKI E+M+ +E+FI+G + G K + +F+ + FA+YGFNKSH+ YA Sbjct: 710 DDLRKAMGKKIVEKMNSMEEKFINGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCYA 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+YQ A++K HYP+E+ A + + + +KI + + +Q NI I+ SV F Sbjct: 770 LIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEVKQKNIDIVTASVFESNALFSQ 829 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + +I Y+L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ G Sbjct: 830 KNGKIVYALHAVKGVGLHAALAIEEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 889 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947 A FG++ LL SLD I +A +K + +F E + S + +EK Sbjct: 890 AFSEFGHTESALLASLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEYA 949 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 S++ ENE+ VLGF HP Y + + + L +V+S + Sbjct: 950 SNILMENEKEVLGFSLRYHPFARYISKIDYKYFNNTLDIDNLKDKDEFSLPCVVMSVTES 1009 Query: 1008 KTRKGSRIGWVTFSEP 1023 T+K + + + + Sbjct: 1010 TTKKNTPMLTLKVIDL 1025 >gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 1161 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 415/1049 (39%), Positives = 614/1049 (58%), Gaps = 41/1049 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G Sbjct: 2 NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG ++ + + LL ST EGY+ LI L+SR Y Sbjct: 62 LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111 Query: 127 QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + V I W EI +GLI+L+GG G + + S + L ++K F D Y+ Sbjct: 112 NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243 L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ + K Sbjct: 171 LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + + +LK EM +FSD+PEAL N+VEIA+RC+ + ++ + Sbjct: 231 IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360 + E L +A G++ RL + + Y Q RLD EL VI +M F GYFLIV Sbjct: 286 KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI Sbjct: 346 MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L KL+P Sbjct: 406 DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +S + V L++I++KLEG R+ HA G+VI ++ Sbjct: 466 LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595 P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + Sbjct: 525 DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644 Query: 656 DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L Sbjct: 645 QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAM KK ++M +Q+ F GA NGI K +++ IF+LL KFA YGFNKSH+ A Sbjct: 705 SADILRRAMSKKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N +F Sbjct: 765 YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y L AIKG+G + + +++ + F L D C R+DS+K+ RRVLE L+ Sbjct: 825 YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 +G+ DCF +R LLQS+D+ ++ + ++ K +++F + + K L Sbjct: 885 MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + +NE +VLGFY +GHP++ YK L + + R I +A ++VS Sbjct: 944 VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ +RI + + E F Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|46446023|ref|YP_007388.1| DNA polymerase III subunit alpha [Candidatus Protochlamydia amoebophila UWE25] gi|46399664|emb|CAF23113.1| putative DNA polymerase III, alpha chain [Candidatus Protochlamydia amoebophila UWE25] Length = 1252 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 385/1089 (35%), Positives = 598/1089 (54%), Gaps = 66/1089 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP FVHL+ HS YS+L+ + S++++ + + +IA+TD NLF ++F + Sbjct: 1 MISSP-FVHLRTHSQYSILDASASISDLSQRAFQEGMSSIALTDHGNLFGIVDFYKACKE 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++ IIGC+L + L+ T + LL GYQ L +L S Y+ + Sbjct: 60 VKVKSIIGCELYVAPGSRLEKTKVYGQR--AAYHLTLLAQNNRGYQNLAKLSSSGYI-EG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 R+ L++ +EGLI L+G + + + + LL ++++F DR Y+ Sbjct: 117 FYYYPRVDHDLLRK-HSEGLICLSGSLGTLLAHEILQGNVKSIQDHLLWYQEVFKDRFYL 175 Query: 185 NLQRHRG-------------------------YDRYRESQVVQLAYTHELPLVATNNSLF 219 +LQRH + ++ L+ H +PLVATN+ + Sbjct: 176 DLQRHEMAAEDIQQDGLYQESWLVQQYQDYFNRQQKVNEALIALSREHHIPLVATNDVHY 235 Query: 220 LSEEDYEAHDVLMAVAHSTV----------------VSQKDRPRVTPDHYLKNRSEMVSI 263 + ED+ AH++L+ + + K + + ++Y K+ +M + Sbjct: 236 IDREDWRAHEILLNIQSGEPCEIWEKDAYGTPKFRIPNPKRQTYPSHEYYFKSSQQMEQL 295 Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-------ECDDIQKEEENELRNKAV 316 F D+PEA+ NT +IA +C + P ++ E D+ +KE EN L Sbjct: 296 FKDVPEAIINTQKIAEQCLVEIDFKTKHYPVYLPPSLENRPFEKDEQKKEVENYLWKLCE 355 Query: 317 AGLEVRLA-------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 G+ R Q R+RL++E+++I S Y LIV DFI WAK+ Sbjct: 356 EGISNRYTIERLAKVQEIYPDRNPLDVVRERLNYEMSIIVPKGMSDYLLIVWDFINWAKR 415 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N IP+GPGRGSGAGS+ Y + ITDI+PLRF L FERF+NP+R+S PD D+D C DRR E Sbjct: 416 NGIPMGPGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGE 475 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI Y KYG + VAQIITFG+++AK AL+DVGR L +P S+V+ + KL+P D + Sbjct: 476 VIAYTLQKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLSKVNEIAKLVPEDLNITLDK 535 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + D R+ D V RL+++++KLEG R+ HAAGI+I PL+ L+P+ Sbjct: 536 A-LEKDQDLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGVPLTNLIPICNSK 594 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 SD+PVTQF+MK +E G++K DFLGLKTLT +Q ++ + G ++D +P DD T Sbjct: 595 DSDIPVTQFSMKPVEAVGMLKVDFLGLKTLTAIQICVNAVKASTGKEIDWINLPLDDKPT 654 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL TLGIFQLES GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+ Sbjct: 655 FDLLNQGKTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGR 714 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E I + HP + +L ET G+++YQEQVMQIA L+ +SL E DVLRRAMGKK ++M KQ Sbjct: 715 EAIENDHPWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQ 774 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E+F GA +N I ++ IF+ + KFA YGFNKSHAAAY +SY TA++K +YP E++ Sbjct: 775 REKFRLGALENQIDNQTSMLIFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANYPGEWM 834 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A+ MT + D++ K+ KF ++ + NI ++PP +N F+ I +++ IKGVG Sbjct: 835 ASLMTCDRDDLSKVAKFIRECQSMNIPMLPPDINEAGEIFQATKQGIRFAMTGIKGVGAG 894 Query: 849 TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 I++ PF + +F R+D+KK+ ++V+ESLV AG+ D G++R L+ S+D Sbjct: 895 VVEAIVQERQKRGPFKNFYEFFKRIDTKKVGKKVVESLVEAGSFDFTGWARDALVMSIDP 954 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFYFSG 965 + + + +K + ++FA +++ + + E+ +LGF+ +G Sbjct: 955 MYESSSKEQKEQAMGFMSLFAKMDDEMTNQFRKPPEVKNKTSRQDLLRKEKALLGFFLTG 1014 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ-QKKTRKGSRIGWVTFSEPA 1024 HP+D YK IL+++ R A +V S Q + ++ + +T S+ Sbjct: 1015 HPMDEYKDILQRLSCVPLRRLDQLNHDAVFRSAFIVESLQIRIASKSQKKFAILTISDGM 1074 Query: 1025 KEYEANFFP 1033 + E +P Sbjct: 1075 ERQELPIWP 1083 >gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1181 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 321/1067 (30%), Positives = 519/1067 (48%), Gaps = 46/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A Sbjct: 1 MNQSSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + I + + + ++ A G + L + Sbjct: 61 AGIKPIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + + A + + Sbjct: 121 LSSLASFEGQLGKWSRMDAELIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 179 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ Sbjct: 180 REIFGADNYFLELMDHGLSIEQRVREGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S +R + D Y + + D + Sbjct: 240 CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVWAQ 299 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 + ++ + L ++ +AGL R G QDY R ++E+ VI Sbjct: 300 RDRMPIFPVPEGHDQASWLHHEVMAGLRRRFPSGV------GQDYIDRAEYEIKVICDKG 353 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 354 FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 413 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 414 PSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 473 Query: 471 QVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K P A + + + + R DP V + + ++ LEGL Sbjct: 474 IADRITKALPPPIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 533 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT+ Sbjct: 534 IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 593 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +L+ + RGV +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 IGDALENIKANRGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 653 Query: 641 EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 DI+A+++LYRPGP+ Y +RKN ++ I IHP ++ L ET G+I+YQEQ Sbjct: 654 NDIVAVLALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGLIVYQEQ 713 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 714 IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKALWDTIL 773 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 774 PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 833 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 ++PP VN V+F I + L A++ VG +++ F D+ +++D Sbjct: 834 TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKID 893 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N++V ESL+ AGA D ++R L + +K ++F G Sbjct: 894 ISACNKKVTESLIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGSDGE 953 Query: 934 FS-----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 I + + + E+ +LG Y SGHPL+ +L + Sbjct: 954 AGCTDSVFTIKVPE-DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQTDTQIPAILD 1012 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +R+ ++ S ++ + G + E FFP Sbjct: 1013 GDVPNESQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1059 >gi|297621741|ref|YP_003709878.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044] gi|297377042|gb|ADI38872.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044] Length = 1236 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 379/1084 (34%), Positives = 585/1084 (53%), Gaps = 67/1084 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV L VHS YS+L+ + S+ I K PA+A+TD NLF A++F + G++PI Sbjct: 2 FVPLHVHSQYSILDASASVKAIAAKAKEFGMPAVALTDHGNLFGAVDFYKSCKGNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC++ I L+ + LL EGY L L SR +L + R Sbjct: 62 IGCEVYIAPNSRLEKKKERGER--AAFHQTLLAKNDEGYHNLCALSSRGFL-EGFYYFPR 118 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L+E GLI L+G S + +A + ++ + ++FG+ Y+ LQRH Sbjct: 119 IDMELLKERSR-GLICLSGCMSSKLSQAILDGAGDECDRLADWYLEVFGEDFYIELQRHP 177 Query: 191 GYDR-------------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + ++++A + VATN+S ++ D+ Sbjct: 178 MSEASLHEGGMYQESWLIQQYQGYIEKQNRLNDALLEIAERKGILYVATNDSHYIERSDW 237 Query: 226 EAHDVLMAVAHSTV----------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269 +AH+VL+ V + K R + + Y K+ EM +F DLPE Sbjct: 238 QAHEVLLNVQSGEPVEIWEKDSLGNPKFRVPNPKRRTYSSHEFYFKSPDEMGELFKDLPE 297 Query: 270 ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE-------ENELRNKAVAGLEVR 322 AL NT+ IA +C+ L P ++ ++ + + E LR G+ R Sbjct: 298 ALSNTLAIADKCTMELDFETKHYPVYVPPSIENTEYTDAERVESVEKFLRQLCAEGIPKR 357 Query: 323 LAQGAIA-------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375 + + +RL+ E++VIA Y LIV DFI WAK + IPVG Sbjct: 358 YTPERLEKVKEVYPDRDPLEVVHERLEEEMSVIAPKGMCDYLLIVWDFINWAKNHGIPVG 417 Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435 PGRGSGAGS+ Y + ITDI+PLRF+L FERF+NP+R+S PD D+D C DRR +VI+Y Sbjct: 418 PGRGSGAGSIVLYLIGITDIEPLRFNLFFERFINPERLSYPDIDVDICMDRRGDVIQYTL 477 Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495 +KYG + VAQIITFG+++AK LRDVGR L +P ++V+ + KL+P+D + + D Sbjct: 478 DKYGKDNVAQIITFGTMKAKMVLRDVGRVLSVPLAKVNEIAKLVPDDLNITLETA-LEKD 536 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 R+ D RL+++ +KLEG R+ HAAGI+I PL +P+ +++P Sbjct: 537 HDLRQLYEQDEETRRLVDLGKKLEGSIRNTGIHAAGIIICGDPLVNHIPVCVAKDAEMPA 596 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTT 614 TQ++MK E+ G++K DFLGLKTLT +Q ++ + +R ++D +P D+ + ++LL Sbjct: 597 TQYSMKPAEQVGMLKVDFLGLKTLTAIQTCVNAIKERVGEQIDWVNLPLDNEKAFNLLNQ 656 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 TLG+FQLES GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+E+I Sbjct: 657 GKTLGVFQLESGGMQDLARQLHLDKFEEIIAVSALYRPGPMDMIPSFINRKHGREEIDYD 716 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 HP + +L ET G+++YQEQVMQIAQ L+ YSL E DVLRRAMGKK E+M Q+E+F Sbjct: 717 HPWMKEILAETYGIMVYQEQVMQIAQKLANYSLGEGDVLRRAMGKKDAEQMAAQREKFRL 776 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA +NGIS+ +++NIF+ + KFA YGFNKSHAAAY+ I+Y TA++K +YP E++AA MT Sbjct: 777 GALENGISENVSMNIFDKMEKFAAYGFNKSHAAAYSYIAYVTAFLKANYPEEWMAALMTC 836 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 + ++ K+ KF ++ + I+++PP VN F I ++++ IKGVGT+ I+ Sbjct: 837 DRHDLTKLSKFIRECQAMQIKMLPPDVNEAGTTFMASKEGIRFAMSGIKGVGTSVVEAIV 896 Query: 855 EAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 F+SL F R+DS K+ ++V+E+LV AG D G+SR QL S++ + + A Sbjct: 897 AEREKGGRFESLYQFIKRIDSSKVGKKVIENLVEAGCFDFTGWSRDQLRMSVEPMFESAM 956 Query: 914 WVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 +K ++F + + + E+ +LGF+ +GHP++ Sbjct: 957 KEKKEEKAGVRSLFELMGENNENLFAEPPKVNMPTPSRQIYL-KEKELLGFFLTGHPMNS 1015 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYEA 1029 +K IL ++ R A +V + + ++ + + S+ + +E Sbjct: 1016 FKDILERLSCIALRNVETLDHQTVFRSAFLVETVRTLFSSKSQRKFAILMVSDGIESFEL 1075 Query: 1030 NFFP 1033 +P Sbjct: 1076 PIWP 1079 >gi|329940921|ref|ZP_08290201.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus M045] gi|329300215|gb|EGG44113.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus M045] Length = 1179 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 333/1067 (31%), Positives = 536/1067 (50%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F HL VH+ YS+L+GA L ++ D IA++D NL A +F A Sbjct: 1 MSNKP-FTHLHVHTQYSMLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + A G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIRWGQPHQKRDDVSGSGGYTHKTIWAADAGGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R + ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIDIEHRVREGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + Y ++ + D +A + + + Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLKSADEM-YAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + G+E R G +D ++++++E++VI +M Sbjct: 298 KRDLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D + + ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRITKAMPADVLGKGIDLNGITDPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G +DL +P DD T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKSNKGRDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG ++I IHP + +L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAFLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I+ + + S D+ +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVDSIIRSRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEG 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 + + + + E+ +LG Y S HPL + +L G + Sbjct: 952 DTSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|311087135|gb|ADP67215.1| DNA polymerase III alpha chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 1161 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 416/1049 (39%), Positives = 615/1049 (58%), Gaps = 41/1049 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P F+HL VHS YS+++G +++ K A+ PAIAITD NNL+ ++F A G Sbjct: 2 NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PIIG ++ + + LL ST EGY+ LI L+SR Y Sbjct: 62 LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111 Query: 127 QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + V I W EI +GLI+L+GG G + + S + L ++K F D Y+ Sbjct: 112 NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243 L R +R + V L+ + +P+VATN+ FLS+ED++ H + +A+ + K Sbjct: 171 LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + + +LK EM +FSD+PEAL N+VEIA+RC+ + ++ + Sbjct: 231 IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360 + E L +A G++ RL + + Y Q RLD EL VI +M F GYFLIV Sbjct: 286 KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI Sbjct: 346 MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD+VI +V YG VAQIITFG+L AKA +RDVGR L PY +++L KL+P Sbjct: 406 DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A + +S + V L++I++KLEG R+ HA G+VI ++ Sbjct: 466 LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595 P+Y D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + Sbjct: 525 DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++++ IP DD + ++LL T G+FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644 Query: 656 DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L Sbjct: 645 QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAM KK ++M +Q+ F GAS NGI K +++ IF+LL KFA YGFNKSH+ A Sbjct: 705 SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+K+HYP EF+AA+MT ++DN EKI ++ ++I+PP++N +F Sbjct: 765 YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886 V D I Y L AIKG+G + + +++ + F L D C R+DS+K+ RRVLE L+ Sbjct: 825 YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944 +G+ DCF +R LLQS+D+ ++ + ++ K +++F + + K L Sbjct: 885 MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003 V + +NE +VLGFY +GHP++ YK L + + R I +A ++VS Sbjct: 944 VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ +RI + + E F Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032 >gi|294628828|ref|ZP_06707388.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14] gi|292832161|gb|EFF90510.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14] Length = 1179 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 335/1067 (31%), Positives = 535/1067 (50%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGQFDEALKSAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + Y S D +A + + ++ + Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFV 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + G+E R G +D ++++++E++VI +M Sbjct: 298 KRDLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRITKAMPADVLGKGIDLDGITNPSHPRYSEAGEVRAMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ +++ VP++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKSNKGIDIDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG ++I IHP + +L T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I+ + S D+ +V+ Sbjct: 832 VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIRTRKAKGKYSSFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S + + + E+ +LG Y S HPL + +L G + Sbjct: 952 TSSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLENVLADKADAGISQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|325982112|ref|YP_004294514.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212] gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212] Length = 1167 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 416/1045 (39%), Positives = 610/1045 (58%), Gaps = 38/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P+F+HL++HS YS+L+ + +++++ K ADQ PA+A+TD NLF ++F Q A Sbjct: 1 MPIKPAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+GC + I + + +++L T GY L L+SR Y +Q Sbjct: 61 NGIKPILGCDIWIANESDRSKPI----------RLLVLCQTHAGYLLLSRLLSRAYRENQ 110 Query: 125 GKQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + I SWLQ + GTEGLI L+G G I + N+ AE ++ + LF DR Sbjct: 111 FQNRAEIKESWLQPDDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRF 170 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR + + LA LP+VAT FL+ EDY+AH+ + +A ++ Sbjct: 171 YLEIQRDGHANEAMLVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILE 230 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K R + T Y K ++EM +F+D+P AL NT+EIA+RC+ IL++ LP F Sbjct: 231 DKRRQKNFTQQQYFKTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPN- 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYF 357 + + LR++A GL R+ Y+ RL+FE+N I +M F+GYF Sbjct: 290 ---NESLDQYLRSQAELGLIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYF 346 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK NN+PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD Sbjct: 347 LIVADFINWAKHNNVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPD 406 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQDRR+ VI YV+ +YG +V+QI TFG++ AKA +RD+GR + +PY+ VD+L K Sbjct: 407 FDIDFCQDRRELVIEYVKQRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAK 466 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP + + + + + V LLE+++ LEG+ R+ HA G++I Sbjct: 467 LIPFEIGMTLKKAR-QLEPQLNQRAEE-EDVRNLLELAESLEGITRNVGMHAGGVLIASS 524 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595 ++ P+Y D V+Q + +EK GL+KFDFLGL+TLT+L +++ ++ Q Sbjct: 525 EITDFCPIYCTESGDSVVSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNID 584 Query: 596 ------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 L +P DD TY L+ +GIFQ ES GM L+ +PD EDIIALV+L Sbjct: 585 SPESRLFSLETLPLDDDATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVAL 644 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + +RK+G+++I + P ++P+L T G++IYQEQVMQIAQ++ GYSL Sbjct: 645 YRPGPMDLIPEFIDRKHGRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGS 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM +Q++ F+SGA NG+S+ A +F L+ KFA YGFNKSHAAAY Sbjct: 705 ADLLRRAMGKKKVEEMAQQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A+I++QTA++K HYP EF+AA ++ +MD+ +K+ F +D+ I I+PP +N F Sbjct: 765 ALIAFQTAYLKAHYPAEFMAACLSADMDDTDKVHIFVEDSIANGIIILPPDINLSDYRFI 824 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D I + L A+KG G + I+ PF L DFC+RVD + NRRV+ESL+ Sbjct: 825 PVDSKNIRFGLGAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIR 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 GA D +R L+ S+ + A+ ++++ N+F + L + + Sbjct: 885 VGAFDIINPNRASLMASVGLAIESAEQT--SQSSNQINLFGETSSDAQMQPQLIQAESWH 942 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + E+ LG+YFSGHP D Y L+ + LA ++ S + + Sbjct: 943 DREKLHQEKIGLGYYFSGHPFDTYASELKHFICTRLDRLNPQREPQ--LLAGIIHSIRTQ 1000 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 TR+G +G + + E F Sbjct: 1001 MTRRGK-MGVINLDDGKARIEVVIF 1024 >gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis DSM 16608] gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis DSM 16608] Length = 1239 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 351/1120 (31%), Positives = 536/1120 (47%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 +VHL VH++YS+L+G + ++DK AD +AITD +F EFS Sbjct: 3 DYVHLHVHTNYSILDGQSKVTRLVDKAVADGMKGMAITDHGVMFGIKEFSDYCAKVNKGR 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +P+ GC++ + + + +++L GY+ LI+LVS+ Sbjct: 63 KEKGEAPFKPVFGCEMYVARRSMHDKDK--GMHDNSGYHLIVLAKNHHGYKNLIKLVSKA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G I + + A + + ++FG Sbjct: 121 W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + ++ TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPTLAANREAYPLQQKANRVLLRFAREYGIKVICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 239 AHDHLLCISTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E + E Sbjct: 299 DHGPIMPFFPIPEDFGTEGEWREKFSEDDLYREFTTDENGEHPLPPEEGQKVIARLGGYE 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G + + + + + FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYDGAKRLYGDPL------SDEVKNHIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE A IIT+ ++ K +++DV R ++P + LCK Sbjct: 473 DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVERLPLDVANGLCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI R ++A D ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGMKMNLTNAIRCTPRLQDAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDDWVPVSTASDPDFPEQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 RQTTGDVVDLDNIPIDDELTYRLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D+ K +FI +NG I I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I + P VN F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKIATLGPDVNESRTGF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + LAAIKG+G + A I+ A+ P+ + DF RVD +NR+ ESL Sbjct: 893 GVNGKGEIRFGLAAIKGMGASAAESIVREREANGPYKDIYDFAERVDLSNVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 ++G D FG R Q LD I +Y Q + + + ++F Sbjct: 953 YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAEQQNSLFGGMDAVEVMHPV 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993 K + + E+ ++G Y S HPLD Y IL M + A + Sbjct: 1013 APKTENWPAIEKLNKERELVGIYLSAHPLDEYSVILNNMCNTRCPQIGRDADLAALSALD 1072 Query: 994 NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + + G G+VT + E F Sbjct: 1073 EVTFGGIVTAVNERFSQKTGKPFGFVTIEDFNGSGELALF 1112 >gi|317488485|ref|ZP_07947036.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325831887|ref|ZP_08164984.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1] gi|316912417|gb|EFV33975.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325486208|gb|EGC88660.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1] Length = 1153 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 323/1048 (30%), Positives = 534/1048 (50%), Gaps = 44/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65 +FVHL H+ YSLL+G + +++ + A PA+AI+D + + + Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61 Query: 66 G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G ++PI GC++ + L+ + P + ++LL T EGY L++LVS + +D Sbjct: 62 GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R S LQ+ G +G+I + +G I + A + F F Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174 Query: 183 YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ LQ + +A L +ATN+ +L+ ED A D ++ + Sbjct: 175 YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + +R R Y+K EM D PEA + TVE+A + + +L+ + + Sbjct: 235 GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDSILPR-- 292 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + EE+ R + GL Q+ ++R D+E+ +I + F Sbjct: 293 ---FPLPEGETEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+P+R+ M Sbjct: 344 YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PYS D++ Sbjct: 404 PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+I ++ + +A + ++A + V +++ + +EG R HA +I Sbjct: 464 TKMIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + QR Sbjct: 523 RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582 Query: 596 VDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD + L+ + G+FQ+E + + P DI+A ++L RPGP Sbjct: 583 KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +++ + Y +GK I + P+L+ET G ++YQEQ+MQI+ +SG+S +AD Sbjct: 643 LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK + M +E + +GA +NG IA I+E KFA Y FNKSH+AAYA++ Sbjct: 703 LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +TA++K HYP +F+AA ++ M N +++ ++ I ++PP +N+ +F D Sbjct: 763 VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + + L ++GVG A I+E A+ PF SL DF +R+D+K NR+ LE+L+ GA Sbjct: 823 EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882 Query: 892 DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945 D GY+R QL+ +D + + A +K+R + ++F F +++ Sbjct: 883 DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004 E+ ++ Y S HPL Y+ + +M + T + M+ + Sbjct: 943 WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K T++G+++ T + E F Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030 >gi|257790804|ref|YP_003181410.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243] gi|257474701|gb|ACV55021.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243] Length = 1153 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 323/1048 (30%), Positives = 534/1048 (50%), Gaps = 44/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65 +FVHL H+ YSLL+G + +++ + A PA+AI+D + + + Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61 Query: 66 G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G ++PI GC++ + L+ + P + ++LL T EGY L++LVS + +D Sbjct: 62 GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R S LQ+ G +G+I + +G I + A + F F Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174 Query: 183 YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ LQ + +A L +ATN+ +L+ ED A D ++ + Sbjct: 175 YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234 Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + +R R Y+K EM D PEA + TVE+A + + +L+ + + Sbjct: 235 GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDSILPR-- 292 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + EE+ R + GL Q+ ++R D+E+ +I + F Sbjct: 293 ---FPLPEGETEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+P+R+ M Sbjct: 344 YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PYS D++ Sbjct: 404 PDIDVDFEQGRREEVISHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+I ++ + +A + ++A + V +++ + +EG R HA +I Sbjct: 464 TKMIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + QR Sbjct: 523 RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582 Query: 596 VDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + IP DD + L+ + G+FQ+E + + P DI+A ++L RPGP Sbjct: 583 KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +++ + Y +GK I + P+L+ET G ++YQEQ+MQI+ +SG+S +AD Sbjct: 643 LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK + M +E + +GA +NG IA I+E KFA Y FNKSH+AAYA++ Sbjct: 703 LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +TA++K HYP +F+AA ++ M N +++ ++ I ++PP +N+ +F D Sbjct: 763 VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + + L ++GVG A I+E A+ PF SL DF +R+D+K NR+ LE+L+ GA Sbjct: 823 EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882 Query: 892 DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945 D GY+R QL+ +D + + A +K+R + ++F F +++ Sbjct: 883 DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004 E+ ++ Y S HPL Y+ + +M + T + M+ + Sbjct: 943 WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K T++G+++ T + E F Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030 >gi|295107511|emb|CBL05054.1| DNA polymerase III, alpha subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 1154 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 330/1048 (31%), Positives = 540/1048 (51%), Gaps = 44/1048 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65 +FVHL H+ YSLL+G + +++ + A PA+AI+D + + + Sbjct: 2 AFVHLHNHTEYSLLDGHTHIYDMVKRAADLGMPAVAISDHGVMSGVPQLCEMCDKVEEET 61 Query: 66 G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G ++PI GC++ + LK + P + ++LL T EGY L++LVS + +D Sbjct: 62 GKRVKPIYGCEVYFTTDEELK-----RDGKPKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R S LQ+ G +G+I + +G I + A F F Sbjct: 116 NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQFDDAVAWANKFASCFEPGDF 174 Query: 183 YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ LQ + +A L +ATN+ +L++ED +A D ++ VA Sbjct: 175 YIELQNQGIRTDAGFTQTELNHMLTDVARAAGLKTIATNDFHYLTKEDAKAQDYMLCVAQ 234 Query: 237 STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 V+ + R R + D + EM D PEA + TVE+A + +L+ + + Sbjct: 235 GAAVNDEKRMRFSNDEFYMKSEEEMREALKDFPEACDTTVEVAEKVDVVLERDSILPR-- 292 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + EE+ R + GL Q+ ++R D+E+ +I + F Sbjct: 293 ---FPLPEGETEESYFRRRVQEGLVKHYG------SPVPQEAQERADYEMGIIIQQGFPA 343 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV ++I+WA+ I VGPGRGS AG++ AYA+ IT +DPL LLFERFL+P+R+ M Sbjct: 344 YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD R L PY+ DR+ Sbjct: 404 PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYNTGDRI 463 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 CKLI ++ + +A + ++A + V +++ ++ +EG R HA +I Sbjct: 464 CKLIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAAKSIEGHVRGEGVHACATIIC 522 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 P++ VPM RD + +TQ++ + + GL+K DFLGL+TL +L + + QR Sbjct: 523 RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLSIACRNVEQRFGT 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 KV IP DD + L+ + G+FQ+E + + P DI+A ++L RPGP Sbjct: 583 KVVPEEIPIDDEAAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642 Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 +++ + Y +GK +I + P+L+ET G ++YQEQ+MQI+ +SG+S +AD Sbjct: 643 LESGMVDDYVKVASGKTQIHYYDDRLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LR+AMGKK + M +E + +GA +NG S IA I+E KFA Y FNKSH+AAYA++ Sbjct: 703 LRKAMGKKKLDVMRALQEDWNTGAVENGFSLAIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 +TA++K HYP +F+AA ++ M N +++ ++ ++PP +N+ +F D Sbjct: 763 VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHNGTPVLPPDINSSNAEFTPTD 822 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + I + L ++GVG A I+E A+ P+ SL DF +R+D+K NR+ LE+L+ GA Sbjct: 823 DGIRFGLVGVRGVGANVAEAIIEEREANGPYTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882 Query: 892 DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945 D GY+R QL+ +D + + A +K+R ++F F +++ Sbjct: 883 DSTGYTRKQLMYFVDETPLLESASKRQKDRDRGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004 E+ ++ Y S HPL Y+ + +M + T + M+ + Sbjct: 943 WPKRQLLSYEKEIMKIYVSDHPLRPYEGTIARMTKFQLGDLAERTKEIKSATFVGMISTV 1002 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K T++G+++ T + E F Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHIECICF 1030 >gi|184201117|ref|YP_001855324.1| DNA polymerase III subunit alpha [Kocuria rhizophila DC2201] gi|183581347|dbj|BAG29818.1| DNA polymerase III alpha subunit [Kocuria rhizophila DC2201] Length = 1184 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 370/1072 (34%), Positives = 561/1072 (52%), Gaps = 56/1072 (5%) Query: 5 LEKS---PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + + F HL VH+ YS+L+GA LN++ ++ ++A TD +F A +F K Sbjct: 1 MTSATGKKGFTHLHVHTEYSMLDGAARLNDLFEECHRLGMDSLATTDHGFVFGAFDFWNK 60 Query: 62 ACAAGIQPIIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRL 112 A AAGI+PIIG + + D ++ + LL ++EG Q L Sbjct: 61 ARAAGIKPIIGVEAYLTPGTARQDRTRVKFADGGRDDVSGAGAYTHMTLLAQSSEGMQNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ L Q R+ L + G +GLI TG SG + A K Sbjct: 121 FRASTKASLEGQLY-KPRMDRELLNQYG-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAA 178 Query: 173 TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG + Y L H G ++ +++LA LPLVATN+ + ED ++H Sbjct: 179 EFRDIFGAENFYCELMDHGLGIEKRVTQDLLRLAKELNLPLVATNDLHYTHAEDAKSHAA 238 Query: 231 LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V + + R + + YLK+ +M +F D P+A +NT+EIA RC A Sbjct: 239 LLCVQSGSTLQDPKRFKFDADEFYLKSPEQMRELFRDFPDACDNTLEIAERCEVEFDTSA 298 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +PRF E +D E + + GL R +G D R++ ++E +I Sbjct: 299 NYMPRFPTPEGED----ETSWFIKEVEKGLHYRFPEG------IPDDVREQAEYEKKIII 348 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT+++PL L+FERFLN Sbjct: 349 QMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITELNPLAHGLIFERFLN 408 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++AK AL+D R L P+ Sbjct: 409 PDRVSMPDFDVDFDDRRRSEVIHYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPF 468 Query: 470 SQVDRLCKLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 S +RL K +P D + + + RE DP ++ E +Q LEG Sbjct: 469 SMGERLTKAMPPDVMGKGISLQDVYDKDAKRYDEAGELREVLEDDPESMKVFETAQGLEG 528 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT Sbjct: 529 LKRQWGVHAAGVIMSSDPLIDIIPLMRREQDGQVITQFDYPTCEGLGLIKMDFLGLRNLT 588 Query: 581 LLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ +L+ +A + G +DL +P DD +Y LL TLG+FQL+ MRQ L+ M+PD Sbjct: 589 IISDALENIALNRDGFVLDLEHLPIDDPGSYELLARGDTLGVFQLDGGPMRQLLKLMRPD 648 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692 EDI A ++LYRPGP+ ++ Y RKNG ++I IHP + L++ T G+I+YQ Sbjct: 649 NFEDISATIALYRPGPMGANSHTNYALRKNGAQEITPIHPELAEPLEDILGTTYGLIVYQ 708 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ + F G G S+ ++++ Sbjct: 709 EQVMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQYQGFHQGMVDRGYSEAAIKALWDI 768 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R Sbjct: 769 LLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLTECRHM 828 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 I ++PP VN ++F I + + A++ VG + +++A F S DF ++ Sbjct: 829 GITVLPPDVNESELNFTPVGTDIRFGMGAVRNVGANVVQAMVDARNEQGKFTSFNDFLAK 888 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIF-- 927 V + N+R +ES++ AGA D G++R L+ + + +K N +IF Sbjct: 889 VPAVVCNKRTIESMIKAGAFDQLGHTRRSLVMCHEQAVEDVVAQKKKEDNGEFTFDIFSM 948 Query: 928 --AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + + + + + E+ +LG Y S HPL L + Sbjct: 949 GGSEDDEQETFSVEVPDVPEWERKDLLAFEREMLGLYVSDHPLRGLDDALGQYTDTAIAP 1008 Query: 986 SV----ATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032 + G + + M+ S ++ + G+ V + + E FF Sbjct: 1009 LLTEENTRPDGAVVTIGGMITSLSRRIAKSSGNAYARVELEDRSGSIEVMFF 1060 >gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118] gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118] Length = 1185 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 410/1055 (38%), Positives = 595/1055 (56%), Gaps = 51/1055 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL++H+ +S+++G + + + AAD QPA+AITD +NLF A++F + A G++P+ Sbjct: 2 FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ ++ V +GY L EL++R + K Sbjct: 62 IGAEIWLEGLGQDASALSRLLLL---------VQNKQGYLNLSELLARAWTQQGNKAQAS 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + L WL+E+G EGLI+L+G +GP+ +A A L +F R Y+ LQR Sbjct: 113 VKLDWLKELG-EGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQRAG 171 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D VQLA LP+VAT+ F +D+EAH+ + +A ++S R R Sbjct: 172 RPDDEAHVVATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVRRF 231 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M ++F+D+P AL NT+EIARRC+ L + P LP F E + + + Sbjct: 232 TREQYFKSSAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMTPD 291 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + R + GL+ R+A Q+ Y RL+FELN I +M F GYFLIV DFI Sbjct: 292 DYFRYASHEGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDFIN 351 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 352 WAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 411 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484 R+ VI YV++KYG + V+QI+TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 412 NRNLVIDYVKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKPGV 471 Query: 485 -------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 ++ A+ + E + V LLE+++KLEGL R+ HA G Sbjct: 472 SVSLQLPPPDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHAGG 531 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ SD V+QF+ +E GL+KFDFLGL TLT+L+ + DF+ + Sbjct: 532 VLIAPGKLTDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFIIE 591 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R +P DD Y L T +FQ ES GM+ L+ +P +ED+IAL + Sbjct: 592 RHRGQENFAFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNA 651 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G+E + HPL+ ML ET G+++YQEQVMQ AQ+L GYSL Sbjct: 652 LYRPGPMDLIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 711 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK +EM +Q++ F GA+KN I++ A +F+L+ KFA YGFNKSHAAA Sbjct: 712 GADMLRRAMGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHAAA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y TAW+K HY EF A+MT+EMD+ +K+K +DA + + PP VN F Sbjct: 772 YSLLAYHTAWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGSRF 831 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877 + + D I Y L+AIKG G I+ A PF SL DFC RVD ++ Sbjct: 832 EPISDKVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRSRV 891 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTF 934 N+R +E+L+ AGA D +R LL S D ++ N +F + G+ Sbjct: 892 NKRTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALAN--ANQGGLFDMDDDAQGSS 949 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + + L + R E+ +GFY SGH D +R+ + ++ + Sbjct: 950 TQEPELVQAVPWGVKERLTFEKTAVGFYLSGHLFDEVALEVRRFAKRQIDDLIDIREPQ- 1008 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 LA ++ + ++G + + EA Sbjct: 1009 -LLAGIITDFRVINGQRGKL-ALFKLDDKSGVIEA 1041 >gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1244 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 403/1054 (38%), Positives = 597/1054 (56%), Gaps = 50/1054 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +++++ A D QPA+AITD NNLF A++F + G++P+ Sbjct: 57 FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ ++ V I+LLV +GY + EL++R + + K Sbjct: 117 IGAEIVLE---------GLGGDATAVTRIILLVQNKQGYLNISELIARAFTQNVVKNQAV 167 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 I ++WL+E+ EGLI L+G +GP+ +A + A L +F R Y+ LQR Sbjct: 168 IKMAWLKEL-NEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAG 226 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D V+LA +LP+VAT+ F ++D+EAH+ + +A ++S R R Sbjct: 227 RADDEAHVVAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRF 286 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS L + P LP F + + E Sbjct: 287 TREQYFKSAAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPE 346 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GL+ R+ + + Y +RL+FEL I +M F GYFLIV DFI Sbjct: 347 EYFRYASFEGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFIN 406 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 407 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 466 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 R+ VI YV++KYG + V+QI TFG++ A+ +RDVGR L M Y+ D + KLIPN P Sbjct: 467 NRNLVIDYVKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGT 526 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ + A + E + V LLE+++KLEG+ R+ HA G Sbjct: 527 NVTLQLPPTDGKKSDKYVYATEAEPILAEREAKEEDVKTLLEMARKLEGMTRNIGMHAGG 586 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y+ S+ V+Q++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 587 VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFIRK 646 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R K +P DD + Y L + T +FQ ES GM+ L +P +ED+IAL + Sbjct: 647 RHPGQEKFAYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 706 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GYSL Sbjct: 707 LYRPGPMDLIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 766 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK KEEMD+ + F +GA +GI + A +F+L+ KFA YGFNKSHAA Sbjct: 767 GADLLRRAMGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSHAA 826 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA + + PP++N Sbjct: 827 AYSLLAYHTGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEKMGLSFEPPNINRGNYR 886 Query: 828 FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-------KPFDSLEDFCSRVDSKKLNR 879 F+ + + I Y L AIKG G I+ A PF SL DF RVD +LN+ Sbjct: 887 FEPISNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRLNK 946 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFS 935 R +E+L+ AGA D +R +L+ S+D + + +F + G+ + Sbjct: 947 RCVEALIKAGAFDTLHLNRAELVASMD--RAFEFAAASAANANQVGLFDMGGDDDHGSST 1004 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 + L + R E+ +GFY SGH D +RK + EE + Sbjct: 1005 QEPDLVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEELQDSREPQ-- 1062 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 LA +V + ++G + + EA Sbjct: 1063 LLAGIVTELRVINGQRGKL-ALFKLDDKSAMIEA 1095 >gi|294827603|ref|NP_710439.2| DNA polymerase III subunit alpha [Leptospira interrogans serovar Lai str. 56601] gi|293385447|gb|AAN47457.2| DNA polymerase III alpha subunit [Leptospira interrogans serovar Lai str. 56601] Length = 1136 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 374/1004 (37%), Positives = 574/1004 (57%), Gaps = 28/1004 (2%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 ++A+TD N+F A+EF +A GI+PIIG + + + + T K ++ Sbjct: 1 MSSVAMTDHGNMFGAVEFYNEAIKQGIKPIIGSEFYVSP-NRKQETEMVKIADGNAYHLI 59 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LL EGY+ LI L S+ Y + + RI L +EGL+ LT +G ++R Sbjct: 60 LLAKNEEGYKNLIRLSSKSYT-EGFYKKARIDYDLLDRY-SEGLVCLTACLAGEVNRKIL 117 Query: 161 FNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSL 218 + + ++F + Y+ +Q H ++ QV + +PLV TN+S Sbjct: 118 EGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSH 177 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 FL + D EA D+L+ + ++ + Y+KN EM IF ++PEA NT+EI+ Sbjct: 178 FLKKNDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEIS 237 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 + + LQ +LP F E D ++ L G+E + + + + Sbjct: 238 NKVNLKLQFGNYLLPEFEVPEGYD----ADSYLEKLIWEGIERKYPN-------LSPEIK 286 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +R+ FELN I MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL Sbjct: 287 ERVIFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPL 346 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 + +LLFERFLNPDR MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL Sbjct: 347 QHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAAL 406 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518 +DV R L +P+ + + + K PN +S +A++ S + D ++ I+Q+L Sbjct: 407 KDVARVLNLPFGEANEMTKAFPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRL 465 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDF 573 EG YR HAAG+VI PL ++VP+ + P VTQ++ +E GLIK D Sbjct: 466 EGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDI 525 Query: 574 LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGLK LT L ++ + QR ++++L I +DD TY LL TLGIFQLES+G+ + Sbjct: 526 LGLKNLTTLDYAIKLIEQRRGIRINLDEISYDDANTYSLLRKANTLGIFQLESTGITDLV 585 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 Q ++I+AL++LYRPGP+ + Y +RK+GK+++ HP +P+LKET GV + Sbjct: 586 AKSQVSNFDEIVALIALYRPGPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPV 645 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM I++++ G+S+ ++DVLR+AM KK + MDK K +F+ GA K GI + +A ++F Sbjct: 646 YQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLF 705 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 E L +F YGFNKSH+ AYA+I+YQTA++K +Y +E+L A + + I K+ +AR Sbjct: 706 EQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAR 765 Query: 811 QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868 + IQI+ P V+ F V DN I + L+A+KGVG T A I++A F +L+DF Sbjct: 766 EMGIQILNPDVSESQASFSVIDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDF 825 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +D++ +N++V E+L+ AGALD FGY+R L +S+D+I +AQ ++ ++F Sbjct: 826 ALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQKEQERANEGQFSLFG 885 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 +E+ +FS + + + + E+ + G Y SGHPLD Y+ L+ + E+ Sbjct: 886 NEESSFSLNLPKDAL-EWEIDEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDD 944 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ SK K +++ + E E F Sbjct: 945 LKSGTKVEVAGVISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 988 >gi|294787463|ref|ZP_06752716.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305] gi|315226967|ref|ZP_07868755.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia denticolens DSM 10105] gi|294484819|gb|EFG32454.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305] gi|315121099|gb|EFT84231.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia denticolens DSM 10105] Length = 1189 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 327/1076 (30%), Positives = 534/1076 (49%), Gaps = 58/1076 (5%) Query: 5 LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + + SFVHL H+ YS L+GA+ + ++ Q A+ ITD N+ A E + A Sbjct: 1 MTRVADSSFVHLHNHTDYSTLDGAVPVKKMVAVAKDLGQKAVGITDHGNMHGAYEMWRTA 60 Query: 63 CAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 AGI+PIIG + I + + + + + + G Sbjct: 61 VDAGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVN 120 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++ S L ++ R+ LQ +G+I TG SG + + A + Sbjct: 121 LLKASSVANLEGLMGKNPRMDRDILQTYH-QGIIATTGCPSGAVQTRLRLGQYKEALREA 179 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + YV + H + ++++A PLVATN+ + E D A D Sbjct: 180 GELQDIFGKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQD 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288 L+ + + ++ DR R Y ++ + F + P+A +NT+EIA RC+ + + Sbjct: 240 ALLCINSGSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDY 299 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + + + + GLE R G +D ++ D+E VI Sbjct: 300 EDGAFMPEFDCPEG--WDATSLFLHDVEQGLEKRYPAGV------PEDVAKQADYECGVI 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ AYA+ IT++DP++ L+FERFL Sbjct: 352 CQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+S+PD D+DF R++V+RYV KYG ++VAQ +T+G+++ K AL+D R + Sbjct: 412 NPERVSLPDIDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYD 471 Query: 469 YSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + + + K +P ++ + + FR+ +P V ++ E ++ +E Sbjct: 472 FQMGETMTKALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R HA ++ +P++ P+ + T F E GL+K DFLGL L Sbjct: 532 GLIRQTGVHACATIMASQPITNTSPLMKR-TDGTVTTTFEYHTCETLGLVKMDFLGLANL 590 Query: 580 TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++++++ + +DL IP DD TY LL++ TLG+FQL+S GM+ L+ ++PD Sbjct: 591 TVIKEAIKNIHDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPD 650 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 DI AL++LYRPGP+ D+ Y RKNG ++I IHP ++ L ET G+I+YQ Sbjct: 651 NFNDISALIALYRPGPMDVDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQ 710 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV A++L+GYSL ADVLRRAMGKK E + K+K F +G ++G S+ A ++++ Sbjct: 711 EQVQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDV 770 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L FA Y FNK+H+AAY ++SY TA++KTHYPVEF+AA + E N +K + + R+ Sbjct: 771 LVPFAGYAFNKAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRM 830 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDF 868 NI+++PP VN + I + L A++ VG I+ F + D+ Sbjct: 831 NIKVLPPDVNESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDW 890 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +R+ + LN+R +ESL+ GA D +R L +++ ++FA Sbjct: 891 INRMPVEVLNKRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFA 950 Query: 929 HEKGTF--------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + I++ + + E+ +LG Y S HPL +L + Sbjct: 951 DSEEDDSASAAALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSD 1010 Query: 981 KGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + I +A +V ++ ++ G VT + +A FF Sbjct: 1011 MSIAQLLNRAATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFF 1066 >gi|291276386|ref|YP_003516158.1| DNA polymerase III subunit alpha [Helicobacter mustelae 12198] gi|290963580|emb|CBG39412.1| DNA polymerase III, alpha chain [Helicobacter mustelae 12198] Length = 1184 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 373/1061 (35%), Positives = 585/1061 (55%), Gaps = 49/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ HL +H+ YS+L+GA + N++ ++ ++++TD N+F A+EF + A GI+P Sbjct: 2 SYTHLHLHTEYSMLDGANKIKNLIQRLKELGMSSVSMTDHGNMFGAIEFYKSMKAEGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + L + L GY+ L+ L S ++ + Sbjct: 62 IIGMEAYVHNYEEL-----NSKEGKQRFHLCLYAKNEVGYKNLMFLSSMAFI-EGFYYYP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFGD 180 RI L+E +EGL+ + G ++ ++A++ L ++ +FG+ Sbjct: 116 RISKKLLRE-HSEGLVASSACLGGEVNFHLNTSERNKKRGAKGIEMAKEVALEYRDIFGE 174 Query: 181 RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH + + ++++ + L+ATN++ ++S++D++ +V+ + Sbjct: 175 DFYLEIMRHGINHQENIDDLIIRISQETGIKLIATNDAHYISQKDHKMQEVVQTLGQGKT 234 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ +R + T + Y+K+ EM IF+D+PEAL NT EI +C+ +++ Sbjct: 235 LNDPNRLKHTVFEFYVKSSEEMERIFADIPEALRNTQEIVEKCNLEIELKDEKTNPPTPP 294 Query: 299 ECDDIQKEE----------ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 ++ + K+ GLE L I Q YR RL+ E+ +I Sbjct: 295 TFIFTKEYAKLEGQEIDNDADFFAYKSRQGLEEYLK---IIPQEKHQIYRDRLEEEIRII 351 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 +MKF GY LIV DFI +AK NIPVGPGRGS AGS+ A+ L ITDIDP++++LLFERFL Sbjct: 352 TQMKFPGYMLIVWDFIHFAKSQNIPVGPGRGSAAGSLVAFCLKITDIDPMKYNLLFERFL 411 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD D DFCQ RR EVI Y+ KYG VAQ+ITFG L AK A+RDV R L MP Sbjct: 412 NPERVSMPDIDTDFCQRRRGEVIEYMIQKYGKYNVAQVITFGKLLAKNAIRDVARVLDMP 471 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 D KLIPN + A + + E +P + E + +LEGL R+A H Sbjct: 472 LKDADAFAKLIPNQLGIKLEDAH-ALEPKIEEFMNQNPKARDVWEYALQLEGLNRNAGKH 530 Query: 529 AAGIVI-GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 AA IV+ ++ L P+ D VTQ++MK++E LIKFDFLGLKTLT++ +L Sbjct: 531 AAAIVLDSEKELWHKTPLCTVGKSDDSLVTQYSMKYLEPVDLIKFDFLGLKTLTVVHDAL 590 Query: 587 DFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + +R ++D + DD + Y + + TLGIFQ+ESS + + ++P EDIIA Sbjct: 591 ELIKKRYGKEIDFLSVDVDDKKVYETIQSGDTLGIFQIESSMFQGLNKRIKPSNFEDIIA 650 Query: 646 LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 +++L RPGP+++ + + NRK+G E+I + ++P+LK T G I+YQEQVMQI Q + Sbjct: 651 IIALGRPGPMESGMVDDFINRKHGLEEITYMFDALEPILKPTYGTIVYQEQVMQIVQTIG 710 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G+SL AD++RRAMGKKIKEEM++ K F +GA KNG + A +++EL+ KFA YGFNK Sbjct: 711 GFSLGGADLVRRAMGKKIKEEMERLKSDFATGAEKNGFDRAKAEDLWELIVKFAGYGFNK 770 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+AAYA+I++QTA++KT+Y EF+AA ++ E +E + K+ + ++ ++ M P VN Sbjct: 771 SHSAAYAMITFQTAYLKTYYKEEFMAALLSSESGKIESVAKYINEVKKMDMDFMSPHVNI 830 Query: 824 PCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 +F V + +I + L+AIKGVG ++I+ F SLEDF SRVD Sbjct: 831 SEKNFGVANFEHEGMGIKKIIFGLSAIKGVGDEPIQNIISVREKGGDFKSLEDFISRVDF 890 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K+ +RVLE L+ +G LD GYSR +L++LD I + + +K + + + +F + Sbjct: 891 SKITKRVLEPLIKSGGLDGLGYSRACMLKNLDAICEAGRRKDKAKESMAQGLFGGLEDEV 950 Query: 935 SDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIR 991 + + F + E LG Y SGHPL+ Y+ + + G Sbjct: 951 EQNVRFDFSNFEEFPLRDLLDLEFECLGIYVSGHPLEEYRESIEGLQGFVPSVSLGEVEE 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +A V +K ++ G+V + + E FF Sbjct: 1011 DSYCLIAGKVSEITRKMSKSNKPYGYVNLLDLYGKIEIMFF 1051 >gi|15646069|ref|NP_208251.1| DNA polymerase III subunit alpha [Helicobacter pylori 26695] gi|2494191|sp|P56157|DPO3A_HELPY RecName: Full=DNA polymerase III subunit alpha gi|2314638|gb|AAD08502.1| DNA polymerase III alpha-subunit (dnaE) [Helicobacter pylori 26695] Length = 1211 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELMLF 1068 >gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183] gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183] Length = 1274 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 360/1147 (31%), Positives = 570/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 12 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 71 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 72 KGEIKDLKKRIAGIESGEIECEDKEAEIAACRAKITEAENKLFKPIIGCEMYVA---RRT 128 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + + R + L++ EGL Sbjct: 129 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 187 IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVSRANHEAYPLQ 246 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 247 QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++E Sbjct: 307 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRRKYTE 366 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 367 KDLFDEFTQDENGNVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDP 426 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 427 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 481 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AIA + A Sbjct: 541 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 601 SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + RG+ +D+ I D TY L T Sbjct: 661 EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLSLDIDKISIKDPATYKLYCDGRT 720 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 721 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G Sbjct: 781 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 841 KNGHDAKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 ++ I K + + I+++ P VN + F V + I + L A+KGVG + IME Sbjct: 901 DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEE 960 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + P+ + DF RV+ N++ LE L AG D F R Q ++ Sbjct: 961 RAKNGPYTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNTKNEVFIET 1020 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + + R E+ ++G Y S HP Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEIPQAERWSDLDRLNKERDLVGIYLSAHP 1080 Query: 968 LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E + G I + +V S ++ ++ G+ G + + Sbjct: 1081 LDEYAVVLEYVCNTHMAELEDKTALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140 Query: 1026 EYEANFF 1032 E FF Sbjct: 1141 SAELPFF 1147 >gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J] gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA] gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J] gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA] Length = 1172 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 410/1061 (38%), Positives = 607/1061 (57%), Gaps = 53/1061 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G + I D ++LLV +GY L +L++R +L +Q + Sbjct: 62 VKPIVGADVWITNHDERDKP----------TRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G +G I + +A K + ++F Sbjct: 112 GRAEIAPEWFDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPG 171 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR H G + Y Q V+LA +LP+VAT+ F++ +D+ AH+ +A Sbjct: 172 AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T + Y K + EM ++F+D+P AL N+V+IA+RC+ L++ P LP F Sbjct: 231 LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPT 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ L A GLE R+ + +Y RL+FE I +M F Sbjct: 291 PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S Sbjct: 347 GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD Sbjct: 407 MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466 Query: 475 LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++ Sbjct: 467 VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFL 589 I L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 527 IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP D + + +L T T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 587 DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 647 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM + + F +GA+K+G+S A IF+L+ KFA YGFNKSHAAAY Sbjct: 707 ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDF 828 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR + + ++PP +N F Sbjct: 767 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRF 826 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV Sbjct: 827 APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945 AGA D +R QLL S+ +K ++F G +++ L Sbjct: 887 AGAFDSLNANRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993 + + + E++ LGFY SGH D + +R+ + Sbjct: 945 WTTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N +A ++V ++ + T++G + V + + E F Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044 >gi|118475097|ref|YP_892396.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp. fetus 82-40] gi|118414323|gb|ABK82743.1| DNA polymerase III alpha subunit [Campylobacter fetus subsp. fetus 82-40] Length = 1331 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 387/1068 (36%), Positives = 596/1068 (55%), Gaps = 54/1068 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F HL +H+ YSLL+GA + + ++ + AITD N++ AL+F + A GI+ Sbjct: 2 SDFTHLHLHTEYSLLDGANKIKVLAKRLKELNIKSCAITDHGNMYGALDFYKTMKAEGIK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + I +++ + + L GYQ L+ L S Y+ Sbjct: 62 PIIGLEAYIHNHEDISNKESRQR-----FHLCLFAKNEVGYQNLMYLSSMSYIKG-YYYH 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179 RI L+E +EGL+ + +G ++ + A++ L +K +FG Sbjct: 116 PRINKKLLRE-HSEGLVCSSACLAGEVNFHLNLSDRNLKRGAGGYESAKRVALEYKDIFG 174 Query: 180 DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 D Y+ + RH D+ R +++L+ + L+ATN++ + +++ A + + ++ + Sbjct: 175 DDFYLEIMRHGIGDQQRIDDDIIRLSMETGIKLIATNDAHYTTKDSAVAQKIFVYISANK 234 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 K R +V + Y K+ EM +IF+D+PE +ENT EI +C+ +++ P F Sbjct: 235 NFDDKVREQVLSEFYAKSADEMSAIFADMPEVIENTNEIVEKCNLEIKLGDATPPNFKFT 294 Query: 296 -----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + + + + + GLE RL + Q Y+ RLD E Sbjct: 295 QEYAKERGIILPHPQNEYDLENDSFLFEYECKQGLEKRLEFIDPS---KHQIYKDRLDLE 351 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N I MKF GY LIVADFI AK+ IPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 352 INTINNMKFPGYMLIVADFINEAKRRGIPVGPGRGSAAGSLVAYALRITDIDPLPYNLLF 411 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQ+RR EVI YV KYG VAQ+ TFG L AK +RDV R Sbjct: 412 ERFLNPERISMPDIDVDFCQNRRGEVIDYVIEKYGEYNVAQVATFGKLLAKGVIRDVARV 471 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSRFREARLADPSVDRLLEI 514 + MPYS+ D + KLIP++ + + + E + ++ E Sbjct: 472 MGMPYSEADAMAKLIPDELGITLKAHKNKKGDMEDGAFEKEPKIGELIAKNDLAKQVWEY 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR--SDLPVTQFNMKWIEKAGLIKFD 572 S +LEGL R+ HAAGIVI + L + P+++ + VTQ+ ++E LIKFD Sbjct: 532 SCELEGLNRNPGMHAAGIVISNEELWKKAPLWKQSNAEAGHYVTQYTKDYLEDVDLIKFD 591 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ + + +R L I F+D +TY + + TLGIFQ+ESSGM+ Sbjct: 592 FLGLKTLTVIDNAKKLIKERFGVDILWEKIDFNDQKTYETIQSGNTLGIFQIESSGMQSL 651 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 ++PDC EDIIA+++LYRPGP+++ + + + K+GK+KI + P+L+ T GVI Sbjct: 652 AAKLRPDCFEDIIAMIALYRPGPLNSGMVDDFIDIKHGKKKIEYAFAALKPILEPTYGVI 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQ+ Q + G+SL AD++RRAM KK ++EM K +++ GA +NG + A + Sbjct: 712 VYQEQVMQVVQTVGGFSLGGADLVRRAMSKKKEDEMLHLKTQYLEGAKRNGFDEGKADAL 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+ KFA+YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +N++KI K+ + Sbjct: 772 FELIMKFAEYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLTSEENNIDKIIKYIDEI 831 Query: 810 RQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865 ++ NI+++PP+VN +F V G + I Y +AAIKGVG I++A D PF+S+ Sbjct: 832 KRLNIKLLPPNVNYSVREFSVIQKDGSDSIIYGMAAIKGVGVGAVEDIIKAREDGPFESV 891 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 + F S+ D +NRRV ESL+ +GA D FG++R L+ +L+ I + ++ + + N + Sbjct: 892 DSFISKTDCTTVNRRVFESLIKSGAFDDFGFTRKMLIHNLETIIENSKRISDIKKNATNS 951 Query: 926 IFAHEKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 +F+ + + L + + EQ +LG Y SGHPLD Y+ + K+ Sbjct: 952 LFSDDDSMSEISVDLVNIKDEFDKKEILKFEQEILGVYVSGHPLDEYRDKIDKINYTVSS 1011 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E G+ I + + K T+ G ++ + + EA F Sbjct: 1012 EFENVEDGSEILVVGKIEDTTTKITKTGKKMAIINILDIHGNIEATAF 1059 Score = 47.1 bits (110), Expect = 0.016, Method: Composition-based stats. Identities = 5/62 (8%), Positives = 20/62 (32%) Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 ++ + ++ + + I + + + T+ G + + + + E Sbjct: 1123 FQNYFDTIKHATIKDIPNLTKESEILIIGKMSHINIRTTKSGMEMAILNIVDISGNSEMI 1182 Query: 1031 FF 1032 F Sbjct: 1183 AF 1184 >gi|319647332|ref|ZP_08001554.1| DnaE protein [Bacillus sp. BT1B_CT2] gi|317390679|gb|EFV71484.1| DnaE protein [Bacillus sp. BT1B_CT2] Length = 1127 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 386/1025 (37%), Positives = 585/1025 (57%), Gaps = 36/1025 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQVHS YSLL A S+ ++ K A+A+TD ++ A+EF + GI+PI Sbjct: 16 FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 75 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ +VLL T +GYQ L+++ S + Q K Sbjct: 76 IGLTASVLTDEKEQLS----------YPLVLLAKTNKGYQNLLKISSVL----QSKSKTG 121 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 I WL+ EGLI LT G + ++ + A+ L +FG+ Y++ Q + Sbjct: 122 IKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 180 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +G D ++++L+ +P+ AT + ++ +ED A+ L A+ +++ + Sbjct: 181 KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 239 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 LK +EM+ I+ D P+ALENTV+IA RC L + LP++ K ++ Sbjct: 240 LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 295 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GL+ ++Y +RL +EL VI M FS YFLIV DF+++A Sbjct: 296 YLAELCFLGLKK-------RFEAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 348 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF RRDE Sbjct: 349 NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 408 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV+NKYG VAQI TFG+L AKAALRDVGR + + + D+L KLIP+ P + Sbjct: 409 VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLKE 468 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A + + + + +QK+EGL RH S HAAG+V+ + PL+ ++P+ + Sbjct: 469 AR-ALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-EG 526 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 + +TQ++M ++E GL+K DFLGL+ LTL++ + + V +D S IP+DD +T Sbjct: 527 HGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQT 586 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI +Y RK+G+ Sbjct: 587 FKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHGR 646 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + H + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+GKK KE +D + Sbjct: 647 VPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDTE 706 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + FISG K G S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F+ Sbjct: 707 RNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYFM 766 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 +T + N EK+ ++ +A+ + ++ PS+N F V + + YSL A+KGVG Sbjct: 767 CGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGIA 826 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I A +KPF L DFC R K +NR+ +E+L+FAGA+D FG +R LL S+D Sbjct: 827 AVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDVA 886 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++A+ + N F E + K + +E+ LG YFS HPL Sbjct: 887 LEHAELFAGD--NDQLGFFLDE--GLTIKPKYAETEEMPLVDLLAHEKETLGIYFSDHPL 942 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V++ L + G + +A+ R L ++ + +T+ G + ++ S+ + E E Sbjct: 943 SVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEME 1001 Query: 1029 ANFFP 1033 A FP Sbjct: 1002 AVVFP 1006 >gi|52081424|ref|YP_080215.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580] gi|52786800|ref|YP_092629.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580] gi|52004635|gb|AAU24577.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52349302|gb|AAU41936.1| DnaE [Bacillus licheniformis ATCC 14580] Length = 1114 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 386/1025 (37%), Positives = 585/1025 (57%), Gaps = 36/1025 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQVHS YSLL A S+ ++ K A+A+TD ++ A+EF + GI+PI Sbjct: 3 FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +++ +VLL T +GYQ L+++ S + Q K Sbjct: 63 IGLTASVLTDEKEQLS----------YPLVLLAKTNKGYQNLLKISSVL----QSKSKTG 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 I WL+ EGLI LT G + ++ + A+ L +FG+ Y++ Q + Sbjct: 109 IKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 167 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +G D ++++L+ +P+ AT + ++ +ED A+ L A+ +++ + Sbjct: 168 KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 LK +EM+ I+ D P+ALENTV+IA RC L + LP++ K ++ Sbjct: 227 LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 282 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GL+ ++Y +RL +EL VI M FS YFLIV DF+++A Sbjct: 283 YLAELCFLGLKK-------RFEAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 335 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GPGRGS AGS+ AY L ITD+DPL+ LLFERFLNP+R+SMPD DIDF RRDE Sbjct: 336 NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 395 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV+NKYG VAQI TFG+L AKAALRDVGR + + + D+L KLIP+ P + Sbjct: 396 VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLKE 455 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 A + + + + +QK+EGL RH S HAAG+V+ + PL+ ++P+ + Sbjct: 456 AR-ALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-EG 513 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 + +TQ++M ++E GL+K DFLGL+ LTL++ + + V +D S IP+DD +T Sbjct: 514 HGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQT 573 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + LL T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI +Y RK+G+ Sbjct: 574 FKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHGR 633 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + H + +LK+T GVI+YQEQ+M IA ++G+ L EAD+LRRA+GKK KE +D + Sbjct: 634 VPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDTE 693 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + FISG K G S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F+ Sbjct: 694 RNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYFM 753 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 +T + N EK+ ++ +A+ + ++ PS+N F V + + YSL A+KGVG Sbjct: 754 CGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGIA 813 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I A +KPF L DFC R K +NR+ +E+L+FAGA+D FG +R LL S+D Sbjct: 814 AVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDVA 873 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++A+ + N F E + K + +E+ LG YFS HPL Sbjct: 874 LEHAELFAGD--NDQLGFFLDE--GLTIKPKYAETEEMPLVDLLAHEKETLGIYFSDHPL 929 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V++ L + G + +A+ R L ++ + +T+ G + ++ S+ + E E Sbjct: 930 SVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEME 988 Query: 1029 ANFFP 1033 A FP Sbjct: 989 AVVFP 993 >gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255] Length = 1128 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 463/1017 (45%), Positives = 654/1017 (64%), Gaps = 29/1017 (2%) Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87 + + + +Q PA+A+TDTNN+F ALEFS+ A G+QPI+GCQ+++ + Sbjct: 2 HVKKLPSAVIKEQMPAVALTDTNNMFGALEFSEIASIEGVQPIVGCQMNLAYMTADNPRD 61 Query: 88 QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147 + P P IVLL + GY L++L S ++L + I + LQ+ +GLI L Sbjct: 62 RNPLPLP----IVLLAQSEIGYLNLMKLSSCLFLESGD-EPAHITTTQLQKY-NDGLICL 115 Query: 148 TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-------DRYRESQV 200 TGG+ GP+ + A+ L ++F +R YV +QRH ++ E Sbjct: 116 TGGALGPVGQLLQDGHIDKAKILLKHLSEIFLNRTYVEIQRHGSDGEKYTLEEQKTEKYF 175 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSE 259 +++AY+ ELPLVATN+ F + E Y AHD L+ ++ + V Q+D R R+TP+HY K+ E Sbjct: 176 LEMAYSMELPLVATNDVYFPNREMYAAHDALLCISEGSYVDQQDGRRRLTPEHYFKSSGE 235 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M+ +F DLPEA++NT+EIA+RC+F + ++E ELR +A GL Sbjct: 236 MIELFKDLPEAIDNTIEIAKRCAFKVYKRD--------PILPKFAEDEVQELRRQANEGL 287 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 + RL I Y+ RL+FEL++I M F GYFLIVADFI+W+K N+IPVGPGRG Sbjct: 288 KKRLE--VIQHATTVDVYQDRLNFELDIIEGMGFPGYFLIVADFIRWSKSNDIPVGPGRG 345 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG Sbjct: 346 SGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQGKYG 405 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRF 498 +RV QIITFG L +KAA+RDVGR LQMPY QVDRL KLIP + PVS++ +A++ + Sbjct: 406 RDRVGQIITFGGLLSKAAIRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALAEEPQL 465 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 RE ++ VDR+L+ +Q++EGL R+ASTHAAG+VI DRP+ +LVP+Y+D RSD+P TQF Sbjct: 466 REMAKSEEVVDRMLKYAQQVEGLLRNASTHAAGVVIADRPIDELVPLYQDPRSDMPATQF 525 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 NMKW+E+AGL+KFDFLGLKTLT+++ ++D + +RG+ V++ I +D T+ L + T+ Sbjct: 526 NMKWVEQAGLVKFDFLGLKTLTVVKGAVDLIRKRGINVNIDAIDLEDKATFDLYASAKTV 585 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 +FQ+ESSGM AL M+P+CIEDI+ALV+LYRPGP++NI Y + KNG+ +HP I Sbjct: 586 AVFQVESSGMMDALRRMKPNCIEDIVALVALYRPGPMENIPQYCDVKNGRADRELMHPSI 645 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 D +L+ETQG+I+YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ EMDK++ +F+ GA Sbjct: 646 DHLLEETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQAEMDKERPKFLEGAFN 705 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG+ A +++LL KFA+YGFNKSHAAAYAV+SYQTAW+K +YPVEF+A+ M ++ Sbjct: 706 NGVEPKKAEEVWDLLDKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMASVMNCDLHL 765 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K+ + + ++ I+I+PP +N F V D I Y+L +K VG+ R +A Sbjct: 766 TDKLHVYFDEVKRLGIEIIPPCINRSEALFSVNDGMIAYALGGLKNVGSDAMRLFTDARI 825 Query: 859 DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + F L D RVD +++ +R LE L+ +GA D +R ++ +SLD + Y+ + Sbjct: 826 NGGLFLDLIDVARRVDLRRVGKRPLEMLIRSGAFDQLDSNRKKVFESLDALVGYSSATHE 885 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + +F L R E + +GFY SGHPLD Y L++ Sbjct: 886 EMNSSQGGLFGDAGEDL-PAPRLPMPEDWLPIERLTEEHKAIGFYLSGHPLDDYMGALKR 944 Query: 978 MGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I E +G I ++A V KQ +K+ KG+R + ++P YE F Sbjct: 945 KNILTLHELEQKAQGGKIIAKIAGSVSGKQVRKSAKGNRFAFAQLTDPTGAYEVTIF 1001 >gi|317129921|ref|YP_004096203.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474869|gb|ADU31472.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1128 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 357/1032 (34%), Positives = 586/1032 (56%), Gaps = 40/1032 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSLL L ++ + A+AITD + ++ + F + I+P Sbjct: 2 SFVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKP 61 Query: 70 IIGCQL-DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG +L + QD +K + ++ L EGYQ LI L +R Sbjct: 62 IIGVELAYVKNQDEVKKDHH---------RLLFLAENNEGYQSLIRLTTRAQEKSSSFG- 111 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187 + L + + G+I ++ + G + + + A + + +FG + +++ LQ Sbjct: 112 PYVTYEEL-QANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQ 170 Query: 188 RHRGYDRYRESQVVQLA-----YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H + +++ ++ + ++A+N+ F +E ++AH + ++ + + Sbjct: 171 NHWRQEER--EKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDE 228 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + ++YLK+ EM +F EA NT+ +A +C+ +++ ILP F Sbjct: 229 LPHDYSSSEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPN--- 285 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR G++ R +++ +RLD+EL VI+ MK+ YFLIVAD Sbjct: 286 -ETTATEYLRELCYKGIQERYEN-------PSEETWKRLDYELEVISEMKYEDYFLIVAD 337 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 F+++A + I GPGRGS AGS+ AY L IT++DP+++ L+FERFLN +R+SMPD DIDF Sbjct: 338 FMRYAHEKKILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDF 397 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RRDEVIRYV+ KYG VAQIITFG+L AKAA+RDVGR L + +D++ K IP+ Sbjct: 398 PDNRRDEVIRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSR 457 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + + + ++ V L I++++EGL RH+S HAAGIV+ PL+ + Sbjct: 458 PNITLENA-LKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNV 516 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ ++ +TQF M IE GL+K DFLGL+ L+ +++ L + Q+ + ++L+ I Sbjct: 517 VPLQ-IGNDEMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHIDIELNNI 575 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 PF D T+ LL T G+FQLES+GMR L+ ++P EDI+A+ +LYRPGP++NI VY Sbjct: 576 PFHDVNTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMENIPVY 635 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R + +EK+ HP ++ +L T GV+IYQEQ+MQIA ++G+SL EAD+LRRA+GKK Sbjct: 636 IRRLHKEEKVTYPHPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGKKK 695 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++ +++Q+++F+ G+ G + A ++ L+ +FADYGF +SHA AY++I+Y A++K Sbjct: 696 RDVLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYLKA 755 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 +Y +EF+ A M + + +K+ ++ +AR+ +++ PPS+ F + + I+ L A Sbjct: 756 NYQLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNKDIWIGLHA 815 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 IK VG + I+E A FDSL D C+R+ ++ L +R L++L+ AGALDC R QL Sbjct: 816 IKNVGVQAVQAILEERAKSDFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDDRAQL 875 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L S+D+ +Y + + + N +F E + +S R E++VLGF Sbjct: 876 LASVDDAIEYGEKLREQEKNAQTELFIEE----VKQPEYMSVPPLSSKDRLNFEKQVLGF 931 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y SGHP++ ++ G + A + + +R+A M+ + KT+KG ++ + S Sbjct: 932 YASGHPIESELALVESFGRLSVID--AKEKKSTLRIAGMIEDVKVIKTKKGDQMAFAQLS 989 Query: 1022 EPAKEYEANFFP 1033 + E + FFP Sbjct: 990 DETGEIDLTFFP 1001 >gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1] gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1] Length = 1194 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 412/1058 (38%), Positives = 589/1058 (55%), Gaps = 58/1058 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N I+ A D Q A+A+TD NNLF ++F ++ A G++P+ Sbjct: 19 FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ I+ ++ ++ I++LV + GY L EL++R + + K Sbjct: 79 LGAEIQIEGENGAAVS-----------RIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 +WLQE+G EGLI+L G +GP+ +A A +F R ++ LQR Sbjct: 128 HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAG 186 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248 R D VQLA LP+VAT+ F +DYEAH+ + +A +++ R R Sbjct: 187 RPDDEAHVLAAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRF 246 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D + K ++M ++F+D+P A+ NTVEIARRCS L + P LP F + + Sbjct: 247 TRDQHFKTAAQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNFPVPDGM----TMD 302 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+++ GLE L + Y +RL+FE+ I +M F GYFLIV DFI+ Sbjct: 303 EFFRSESFNGLEDRLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIK 362 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 363 WAKLNGCPVGPGRGSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQA 422 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+ YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 423 NRDRVIDYVKQLYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 482 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ AI + E + V L+E++QKLEG+ R+ HA G Sbjct: 483 HVTLKYPPNPKKEGDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGG 542 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L+ P+Y+ SD V ++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 543 VVIAPGKLADFCPLYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIK 602 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD TY L + T +FQ ES GM+ L +P +ED+IAL + Sbjct: 603 RHKGQENFAFENIPLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 662 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+GKE + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 663 LYRPGPMDLIPSFVARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLG 722 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + F GA+K GIS+ A +F+L+ KFA YGFNKSHAAA Sbjct: 723 GADLLRRAMGKKKVEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAA 782 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y TAW+K HY EF +MT+EMDN +K+K +DA + I PP VN F Sbjct: 783 YSLLAYHTAWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGISFEPPDVNRGMYRF 842 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877 + V D I Y L AIKG G I+ A PF SL DFC RVD +L Sbjct: 843 EPVTDKVIRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRL 902 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R LE+L+ GA D +R L+ S+D+ ++ N +F G+ Sbjct: 903 NKRTLEALIKGGAFDAIELNRASLVASIDHAFEFGNKTLAN--ANQGGLFDMMGDDAVGS 960 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + + L + R E+ +GFY SGH D + +R+ E + Sbjct: 961 STQEPPLVEALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPLAELRDSREPQ 1020 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 LA ++ + ++G R+G + + EA+ Sbjct: 1021 --TLAGIISDFRAINGQRG-RLGLFKIDDGSGVIEASV 1055 >gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 1153 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 485/1051 (46%), Positives = 663/1051 (63%), Gaps = 40/1051 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL++H++YSL E L + N+ ++ D QPA AITDTNN+F ALEFS+ Sbjct: 1 MPTN--FVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVN 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+G QL+I +VLL GY L L+S L + Sbjct: 59 VGVQPIMGAQLNITDS-------------QGTGEVVLLAQNETGYVNLSHLLSDALLNSE 105 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + L +EGLI+L+GG G + +A+ RL + R+Y Sbjct: 106 ANANPHCNFDALAAR-SEGLILLSGGVMDGFVGLPASDGRQSLAKSRLQALNTIMQGRVY 164 Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + LQRH G ++ E +V LA +LPLVATN+ F S + HD L+ + VS+ Sbjct: 165 IELQRHGLGAEQVAEPILVALADNLDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSE 224 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEK 298 ++R + +P+HY K+ +M +F D+PEA+ NTV IA+RCS++ AP Sbjct: 225 ENRIKYSPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAFTAGTDVT 284 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E + ++ E+ L ++ + A AK A+ Y+ RL FEL VI +M F GYFL Sbjct: 285 EDVALARQAEDGLAHR-LERYVYSDDMDAAAKADIAKPYQDRLAFELGVINQMGFPGYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFIQWAK IPVGPGRGSGAGSV A+AL+ITD+DPLR+ LLFERFLNP+R+SMPDF Sbjct: 344 IVADFIQWAKNAAIPVGPGRGSGAGSVVAWALSITDLDPLRWGLLFERFLNPERVSMPDF 403 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRRDEVI YVQ KYG +RVAQIITFGSLQA+AALRDVGR L+MPY QVDR+ KL Sbjct: 404 DIDFCQDRRDEVITYVQEKYGKDRVAQIITFGSLQARAALRDVGRVLEMPYGQVDRIAKL 463 Query: 479 IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 IPN+PA+P ++ + ++ R R D V L+++S LEGLYRHASTHAAG+VIGDR Sbjct: 464 IPNNPANPTTIAQALESEADLRAERNQDEQVADLIDMSLSLEGLYRHASTHAAGLVIGDR 523 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 PL+ LVP+YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ++++F+AQRG++++ Sbjct: 524 PLADLVPLYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQRAVEFIAQRGIEIN 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD +T+ +L+ T+G+FQLES+GMR L G++PD EDIIA+V+LYRPGP++N Sbjct: 584 LDAIPLDDIKTFEMLSAGDTVGVFQLESAGMRDVLRGLKPDRFEDIIAVVALYRPGPMEN 643 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I Y RK+ +I +HP ++P+L ET G++IYQEQV Q AQ+L+GY+L AD+LRRAM Sbjct: 644 IPDYVARKHDPSQITYMHPDLEPVLNETYGIMIYQEQVQQAAQVLAGYTLGAADILRRAM 703 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKIK EMD Q+ F++GA N IS+ +A +IF+ +A FA YGFNKSHAAAYA++SYQTA Sbjct: 704 GKKIKAEMDAQRATFVNGAVDNAISEKLASDIFDTIAAFAGYGFNKSHAAAYALVSYQTA 763 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833 ++K +YPVEFLAASM L+ N EK+ F Q+ +Q I I PP VN F+V + Sbjct: 764 YLKANYPVEFLAASMALDAGNTEKLAVFRQECQQKGITIKPPCVNHSFAGFRVEPDNNHP 823 Query: 834 -------RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885 I Y+L AIK VG + E F+ L DF R+ NRR +E+L Sbjct: 824 ESDNDKLAIRYALGAIKNVGAEAMARLTEKRDAGSKFEHLMDFLERLPRDASNRRQMENL 883 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 V AGALDC +R +LL ++D + +A+ + +++ + N+F + + + + L Sbjct: 884 VRAGALDCLHANRHELLNNIDYLLAHAETLRRDKESNQNNLFGDDTDSMASSLRLTPCED 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----IRGNNIRLAAMV 1001 R + E LG Y S HPLD Y L K+ I E + LA + Sbjct: 944 WVPMDRLKEEFDALGLYLSAHPLDGYGNQLAKLRIITASELNRQIEAGRPPQRVNLAGSI 1003 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 KQ + +++G++ +V F++ +E FF Sbjct: 1004 TGKQVRVSQRGNKFAFVQFTDQTGVFETTFF 1034 >gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302] gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302] Length = 1235 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 356/1116 (31%), Positives = 545/1116 (48%), Gaps = 103/1116 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 F+HL VH+ YS+L+G ++N+++K + +AITD +F EF+ Sbjct: 3 DFIHLHVHTYYSVLDGQSKISNLVNKAVENGMKGMAITDHGVMFGIKEFADYCAGVNKKR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G+ +PI+GC++ + + + +++L GY+ LI+LVS+ Sbjct: 63 KADGLEPFKPILGCEMYVARHRLQDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSKS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ + R L++ E LI+ + +G + + + A + + ++FG Sbjct: 121 WM-EGYYYRPRTDRVELEKYH-EDLIVCSACIAGEVPSKIIKDDLEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + ++ TN+ F +E E Sbjct: 179 DDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + +R R + + K R EM IFSD+PEAL NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPNRMRYSKQEWFKTREEMNDIFSDVPEALSNTLEIFDKVELYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++ Sbjct: 299 EHGPIMPFFPIPESFGTEEGWRKKFTEADLYREFTSDENGENPLSQEEGQKVIDRLGGYD 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G + + R+ ++FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYDGAKRLYGDPV------PDNVREHINFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ + + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAARTDLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+R+V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVERLPLDKSNFLCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI REA DP ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGLKMNLTNAIKCTPELREAEVSQDPRERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + +DL IP DD TY L T+G FQ ES GM++ L + P ED+IA+ + Sbjct: 653 KKTVGDDIDLDNIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPTLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA+MK HYP E++AA MT + +I K ++ + I + P VN +F Sbjct: 833 YSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+G T A I++ + P+ + DF RVD +NR+ ESL Sbjct: 893 GVNKKGEIRFGLSAIKGMGETAALSIVKERETNGPYKDIYDFAERVDYGCVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D F + R Q + LD + +Y Q ++ + ++F E + Sbjct: 953 LSGGFDGFEFRREQYFAAGMKGDVFLDTLVRYGQLYQQEQREAKNSLFGGESAVEISRPV 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996 ++ R E+ ++G Y S HPLD Y IL+ M E + I Sbjct: 1013 PGNAEDWSTIERLNRERDLVGIYLSAHPLDEYGVILKSMCNTHCVEIDKKEELAKKEEIS 1072 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +V + K T+ G G+VT + E FF Sbjct: 1073 IGGIVTGVKSKFTKNGKPCGFVTLEDFEGSGELAFF 1108 >gi|313204257|ref|YP_004042914.1| DNA polymerase iii, alpha subunit [Paludibacter propionicigenes WB4] gi|312443573|gb|ADQ79929.1| DNA polymerase III, alpha subunit [Paludibacter propionicigenes WB4] Length = 1265 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 376/1125 (33%), Positives = 584/1125 (51%), Gaps = 107/1125 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 SFVHL VHS YS+L+G +++ ++DK + A+A+TD N+F EF A Sbjct: 3 SFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNGKV 62 Query: 67 -----------------------------------IQPIIGCQLDIDMQDNLKMTNQGKT 91 +PIIGC+ + + L T Sbjct: 63 KGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKE---GT 119 Query: 92 PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151 + +VLL +GYQ L +LVS ++ + RI L++ +EGLI + Sbjct: 120 EDRSGYHLVLLAKNKKGYQNLCKLVSMSWI-EGMYYRPRIDHDILEKY-SEGLIASSACL 177 Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY---------DRYR--ESQV 200 G I + + AEK ++ +KK+FGD Y+ LQRH+ D+ ++ Sbjct: 178 GGEIHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEEL 237 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260 ++LA +VATN+ F+ EE EAH+ L+ ++ + +R R T +LK+ +M Sbjct: 238 IKLARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQM 297 Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ-----KEEENELRNKA 315 IF+D+PEAL NT+EIA + F ++P F E + K E LR++ Sbjct: 298 WQIFADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSEF 357 Query: 316 VAGLEVRLAQGAIAKGYHAQDY---------------------RQRLDFELNVIARMKFS 354 G + + DY ++R+DFEL V+ M F Sbjct: 358 GEGFDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQKERIDFELEVMKTMGFP 417 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIV DFI+ A+ + VGPGRGS AGSV AY L ITDIDPL++ LLFERFLNPDR+S Sbjct: 418 GYFLIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFLNPDRIS 477 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD DIDF D R +V+R+V KYG ERVA IIT+G++ K++++DV R ++P S+ DR Sbjct: 478 MPDIDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLSEADR 537 Query: 475 LCKLIPNDP--------AHPVSLQAIADDSRFREARLADP-SVDRLLEISQKLEGLYRHA 525 L KLIP+ + + AR + ++ L ++ LEG R Sbjct: 538 LTKLIPDKFPEGADGKAPKITISNCLKYVPEMQTARNSSDLNLANTLRYAEMLEGTVRQT 597 Query: 526 STHAAGIVIGDRPLSQLVPMYRDV----RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 HA G++IG L+ LVP+ + ++ VTQ+ IE+ GLIK DFLGLKTL++ Sbjct: 598 GVHACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLGLKTLSI 657 Query: 582 LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 ++++L + + +G+ +D+ IP DD +TY L + T+G FQ ES+GM++ L +QP Sbjct: 658 IKEALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLINLQPTQF 717 Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ED+IA+ +LYRPGP+ I + NRK+G+EKI P+++ LK+T G+ +YQEQVM +++ Sbjct: 718 EDLIAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQVMLLSR 777 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADY 759 L+G++ ++D LR+AMGKK+ ++M+ K +F+ G KNG K I+ A+FA Y Sbjct: 778 DLAGFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDWAEFAKY 837 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHA Y+ I+YQTA++K HYP EF+AA++T D++ ++ KF + + + ++ P Sbjct: 838 AFNKSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLGMNVLGP 897 Query: 820 SVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 VN + F V D + + L AIKGVG I+ A+ + S+ + RV+ Sbjct: 898 DVNESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIERVNLTAC 957 Query: 878 NRRVLESLVFAGALDCF-GYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAH 929 N+R +ESL +GA D F R QL Q L++I +Y + + ++F Sbjct: 958 NKRAMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTKNSLFGG 1017 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 K + + + E+ ++G Y S HPLD Y+ + + + Sbjct: 1018 LDSVEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATTVDLKDL 1077 Query: 990 --IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++G +++ MV + + ++ G+ G T + A +E F Sbjct: 1078 SSLQGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALF 1122 >gi|224538019|ref|ZP_03678558.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM 14838] gi|224520366|gb|EEF89471.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM 14838] Length = 1264 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 359/1140 (31%), Positives = 574/1140 (50%), Gaps = 122/1140 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF Sbjct: 3 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62 Query: 59 --------------------------------SQKACAAG--IQPIIGCQLDIDMQDNLK 84 ++ A A +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIESGEIACEDKDAELADCRAKLAEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWT-EGYYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFG+ Y+ LQRH+ Sbjct: 178 IVCSACIGGEVPKKILNDQLEDAEEAVRWYKNLFGEDYYLELQRHKATVPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + L+ +N+ F++EE EAHD L+ ++ + R T + Sbjct: 238 QRANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPKRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADIPEALSNTLEILNKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332 EE + + K + G E A Sbjct: 358 KDLFDEFTQDENGNVVLSEEAAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 +++ +RL FEL ++ M F GYFLIV DFI + + VGPGRGS AGS AY L I Sbjct: 418 LSEEVMERLKFELYIMKTMGFPGYFLIVQDFIAAGRNMGVSVGPGRGSAAGSAVAYCLQI 477 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 478 TKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTM 537 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSVD 509 K A++DV R ++P S+ DRL KL+P+ AI + A DP V Sbjct: 538 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVR 597 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 657 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + R +++++ +P DD TY L + T+G FQ E Sbjct: 658 TGLIKMDFLGLKTLSIIKEAVENIRLHRKLELNIDKVPIDDPATYKLYSDGRTIGTFQFE 717 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+ Sbjct: 718 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKD 777 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPK 837 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 838 VLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITK 897 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 + + I+++ P VN + F V + I + L A+KGVG +IME + PF Sbjct: 898 LMDECKAMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGPF 957 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 958 KGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELKREQYFAVNSKNEVFMETLVRYGNR 1017 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + ++ ++F E + + + R E+ ++G Y S HPLD Y + Sbjct: 1018 YQADQAAAANSLFGGENVVDIATPEIPEAERWSDLDRLNRERDLVGIYLSAHPLDEYSVV 1077 Query: 975 LRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L+ + E A + G I + +V S ++ ++ G+ G + + E FF Sbjct: 1078 LQHVCNTRMAELEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPFF 1137 >gi|134102263|ref|YP_001107924.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL 2338] gi|291003774|ref|ZP_06561747.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL 2338] gi|133914886|emb|CAM04999.1| DNA polymerase III alpha subunit [Saccharopolyspora erythraea NRRL 2338] Length = 1194 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 336/1076 (31%), Positives = 528/1076 (49%), Gaps = 57/1076 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL VH+ YS+L+GA + + + + PA+ +TD N+F A EF Q+A Sbjct: 1 MPVDP-FVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 GI+PIIG + + + + +L A Sbjct: 60 TGIKPIIGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNAT 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L SR + Q + R+ + E EG+I TG SG + A Sbjct: 120 GLRNLFTLSSRASMEGQ-YRKPRMDRELVAEY-AEGIIATTGCPSGEVQTRLRLRQFDEA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + +K +FG + ++ L H +R ++++A L VATN+S +++ + Sbjct: 178 MQAASDYKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 E+H L+ V ++ + R + D Y + + + D + Sbjct: 238 ESHGALLCVQSGKTLNDESRFKFDGDGYYLKSAAEMREYWDKEVPGAADNTLLIAERVES 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + + D K E L + L R +GA Q+ R+ EL Sbjct: 298 YEDVWSFQDRMPRVTDGSGKTERQLLEAEVEQYLPTRYPEGA------TQECLDRIKVEL 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +V+ + YFL+V D +WAK I VGPGRGS AGS+ AY L IT++DPL L+FE Sbjct: 352 DVLDTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLIFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R S PD D+DF RRDEV++Y +KYG ++VAQ+ITFG ++ KAA++D R Sbjct: 412 RFLNPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSARVH 471 Query: 466 Q--MPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLEI 514 ++ D++ K +P A + A+ + R DPSV ++ + Sbjct: 472 HGQPGFAIADKISKALPPPIAAKDIPLSGIVDPQHERYAEAAEVRNLIETDPSVSQIFDT 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ +PL VP+ +T ++ E GL+K DFL Sbjct: 532 ARGLEGLIRNAGVHACAVILSSQPLMGTVPL-WARDDGSIITGWDYPSCEAIGLLKMDFL 590 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL LT+L +L + ++DLS + DD +TY LL +LG+FQLE GMR+ L+ Sbjct: 591 GLSNLTILGDALKMVKANHDREIDLSNLGLDDAKTYELLARGESLGVFQLEGGGMRELLK 650 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 MQP DI+A +LYRPGP+ + Y +RKNGK+ + IHP +D LK+ T G Sbjct: 651 RMQPTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKDILSETYG 710 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+M IAQ ++GYSL AD+LRRAMGKK KE +D++ E F +G + G Sbjct: 711 LIVYQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQGFRDEAID 770 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + FA Y FNKSHAA YA+++Y TA++K +YP E++AA +T DN +K+ + Sbjct: 771 KLWATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKDKMAVYLA 830 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866 + R+ ++++ P VN DF + I + L+A++ VG+ I + D + S Sbjct: 831 ECRRMGVKVLSPDVNDSLNDFTAVGSDIRFGLSAVRNVGSNVVASIAKVREDKGRYSSFT 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF + ++ N+RV+ESL+ AGA D G++RM L Q + +++ + ++ Sbjct: 891 DFLDKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAVIGLKRQQALGQFDL 950 Query: 927 FAHEKGTFSDKITLE------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F ++ + E+ +LG Y S HPLD + +L Sbjct: 951 FGGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQD 1010 Query: 981 KGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G E V R + +++A M+ Q++ + G VT + E FFP Sbjct: 1011 TGIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTLEDLDASVEVLFFP 1066 >gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1177 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 322/1063 (30%), Positives = 520/1063 (48%), Gaps = 42/1063 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A Sbjct: 1 MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59 Query: 65 AGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + I + + + ++ A G + L + Sbjct: 60 AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + + A + + Sbjct: 120 LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ Sbjct: 179 REIFGADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S +R + D Y + + D + Sbjct: 239 CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 + ++ + L ++ +AGL R G QDY R ++E+ VI Sbjct: 299 RDRMPVFPVPEGHDQASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 353 FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 413 PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472 Query: 471 QVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K P A + S + + + R DP V + + ++ LEGL Sbjct: 473 IADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT+ Sbjct: 533 IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 593 IGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652 Query: 641 EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ L ET G+I+YQEQ Sbjct: 653 NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 713 IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 ++PP VN V+F I + L A++ VG +++ F D+ +++D Sbjct: 833 TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N++V ESL+ AGA D ++R L + +K ++F + G Sbjct: 893 ISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGC 952 Query: 934 FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 953 TESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + E FFP Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055 >gi|114776907|ref|ZP_01451950.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1] gi|114552993|gb|EAU55424.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1] Length = 1169 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 409/1039 (39%), Positives = 611/1039 (58%), Gaps = 23/1039 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P F HL VHS +SLL L + ++L K+A +QPA+A+TD NLF A+EF KA Sbjct: 1 MRFAP-FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMR 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI+GC++ I +++ + P P +VLL G++ L++LVS YL D Sbjct: 60 MGIKPIMGCEVFICEDHTKRISEGPR--GPRFPQLVLLARNNHGWKNLLKLVSISYL-DG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183 R+ L E +GLI ++ G +G I++ + A K + ++ +F + + Sbjct: 117 FYYKPRVGKPLLSE-HADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFF 175 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +QR + +++LA+ ++PLVA+NN+ FL ED+EA + A+ + ++ Sbjct: 176 IEIQRQNGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND 235 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 TP++YLK+ EM +F D+PEALENTV IA RC+ LQ LP F E + Sbjct: 236 DVSGHFTPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDME 295 Query: 303 IQKEEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + +R +++ G + A A + Y RL FEL+VI M F GYFLIV+ Sbjct: 296 LS----AYMRQQSMEGLDDRWPAILAGDPDAVRETYDARLAFELDVIENMGFPGYFLIVS 351 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK IPVGPGRGSGAGS+ AY L ITD+DP+++ LLFERFLNP+R+SMPDFDID Sbjct: 352 DFITWAKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDID 411 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RR+E IRYV +KYG ++VAQIITFGS++AKA +RDVGR L M ++V+ + KL+PN Sbjct: 412 FCMSRREEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPN 471 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D + + D+ + + D V RL ++++LEG +R+A HAAG++IG R L Sbjct: 472 DLKMTLEKA-LVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVD 530 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596 P+++ + V Q++M +EK GLIKFDFLGLKTLT++ ++ + Q Sbjct: 531 TAPLFKVAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHF 590 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP D T+ L+ T +FQ+ESSGMR L ++PDC EDIIALV+LYRPGP++ Sbjct: 591 DITTIPMHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLE 650 Query: 657 NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + +V + K+G++ I P + +L+ET GVI+YQEQVMQIAQLL+G+SL +AD+LR Sbjct: 651 SGMVDTFIECKHGRQAIEYPLPQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLR 710 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM +Q++ F++GA K + A ++F+L+ KFA YGFNKSH+AAYA+ISY Sbjct: 711 RAMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISY 770 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K HYP F+AA+M+ +M N +K+ D R I ++ P +N +F+ + Sbjct: 771 QTAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC 830 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L IKGVG R +++ + F S ED R ++ LN+R+LE+++ AGAL Sbjct: 831 IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 + L+ L + + K + +F + +D + + Sbjct: 891 LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTVAEPESADG-GFPTLPAWSPGESLQ 949 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLGFY +GHPL+ + +G E G I + + S +Q + +G+ Sbjct: 950 AEREVLGFYLTGHPLEAWLKRTTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGRGT 1009 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + +V + + E F Sbjct: 1010 -MAFVQLEDLHGQAEMVCF 1027 >gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056] gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056] Length = 1265 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 360/1141 (31%), Positives = 571/1141 (50%), Gaps = 123/1141 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIESGEIACEDKEAEIAACKAKITEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L GY LI+LVSR + + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNETGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332 EE + + K + G E A Sbjct: 358 KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRIYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSV 508 + K A++DV R ++P S+ DRL KL+P+ AIA + A DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + RG+ +D+ I +D TY L T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENVRLHRGLALDIDKISINDPATYKLYCDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDA 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + ++ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 K + + I+++ P VN + F V + I + L A+KGVG + IME + P Sbjct: 898 KLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEEREKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 + + DF RV+ N++ LE L AG D F R Q ++ + +Y Sbjct: 958 YTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + ++ ++F E + + R E+ ++G Y S HPLD Y Sbjct: 1018 RYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNKERDLVGIYLSAHPLDEYSV 1077 Query: 974 ILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +L + E + G I + +V + ++ ++ G+ G + + E F Sbjct: 1078 VLEHVCNTHMAELEDKTLLVGREITMGGIVTTVRRGISKNGNPYGIAKIEDYSGSAELPF 1137 Query: 1032 F 1032 F Sbjct: 1138 F 1138 >gi|121998235|ref|YP_001003022.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1] gi|121589640|gb|ABM62220.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1] Length = 1183 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 404/1070 (37%), Positives = 593/1070 (55%), Gaps = 58/1070 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E P FVHL++HS +SL++G + +N + PA+AITD +NLF ++F + A AA Sbjct: 3 EDPPPFVHLRLHSEFSLVDGIVRINEAVSAAREAGMPAVAITDQSNLFGMVKFYRAALAA 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIG + + T + LL GY+ L L+SR Y Sbjct: 63 GVKPIIGGDVWLADD----------TVEFGYARLTLLCRDRGGYRALSRLLSRAYREGAC 112 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYV 184 I WL + GL+ L+GG+ G I +A A + ++ FG+ Y+ Sbjct: 113 GDIPVIRREWL-QADAGGLLALSGGAQGDIGQALLRGDEATARRYAEEHRRTFGEDGFYL 171 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V LA +LP+VATN+ F+ EDY+AH+V + + + Sbjct: 172 ELHRLGRPGDERHLHAAVALAADEDLPVVATNDVRFMRPEDYDAHEVRVCIHQGRTLDDP 231 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +RPR T Y + ++M FSDLPEALE +V IA RCS L++ LP F E Sbjct: 232 NRPRHYTEQQYFADAADMAERFSDLPEALETSVRIAERCSVDLELDTNYLPDFPVPEG-- 289 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358 + LR ++ GL RL Q +A+ A + Y +RLD EL VI +M F GYFL Sbjct: 290 --HTVASFLRAESERGLTQRLEQRGLAEDEDADEVEATYHRRLDHELAVIEQMGFPGYFL 347 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVADFI+WA+ N+IPVGPGRGSGAGS+ AYAL IT++DPLR+ LLFERFLNP+R+SMPDF Sbjct: 348 IVADFIRWARDNHIPVGPGRGSGAGSLVAYALGITNLDPLRYDLLFERFLNPERVSMPDF 407 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC +RRDEVI YV ++YG E+V+QI T G++ A+A +RDVGR + +DR+ KL Sbjct: 408 DVDFCMERRDEVIEYVSDRYGAEKVSQIATHGTMAARAVVRDVGRVYGHAFGYMDRIAKL 467 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP + + +A+ + R D ++ L++ ++ LEG+ R+ HA G+VI Sbjct: 468 IPFEIGMTLD-KALEQEEDLRAEYDNDENIRELIDTARSLEGMARNVGKHAGGVVIAPTD 526 Query: 539 LSQLVPMYRDVRS------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----- 587 L+ P+YRD T F+ +E GL+KFDFLGL+TLT++ ++ Sbjct: 527 LTDFSPLYRDPEEREDAEAWKVATHFDKDDVEAVGLVKFDFLGLRTLTIIDWTVQAVNRI 586 Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + +D+ IP DD T+ LL T +FQLES GM++ ++ +QPD EDI+ALV Sbjct: 587 LEQRGERALDIDGIPLDDSATFDLLKRCATTAVFQLESRGMKELIKRLQPDSFEDIVALV 646 Query: 648 SLYRPGPIDNIVVYNNRKNGKEK--------IVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 +L+RPGP+ + +V + + + HP + P+L+ T GVI+YQEQV +IA Sbjct: 647 ALFRPGPLQSGMVDDFVERKHGRSAVAGYPTRELHHPDLMPVLQPTYGVILYQEQVQRIA 706 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q+L+GYSL EAD+LRRAMGKK EEM KQ+ +F+ GA G+S+ A IF+L+ KFA Y Sbjct: 707 QVLAGYSLGEADLLRRAMGKKKPEEMAKQRAKFLEGAQARGLSEGHATGIFDLMEKFAGY 766 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA++SYQTAW+K H+P F+A+ ++ +MDN +K+ F +AR ++++PP Sbjct: 767 GFNKSHSAAYALLSYQTAWLKCHFPAPFMASVLSSDMDNTDKVVIFLDEARAMGLEVLPP 826 Query: 820 SVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 VN F+ V + I Y L AIKGVG + ++ A PF + D C RVD+ + Sbjct: 827 DVNRSDKPFRAVDERTIVYGLGAIKGVGESALDAVLGERDAHGPFGDVFDLCRRVDTGRA 886 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRRVLE+L +G+LD +R + + A+ V +++ ++F Sbjct: 887 NRRVLEALCRSGSLDSLVPNRATGMAQIPAALAAAEQVTRDQAAGQTDLFGGPAEAVIAP 946 Query: 938 ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------- 986 + + R E+ LG + +GHP+D Y+ L + + Sbjct: 947 GGAGEEVAEEPEWPEEERLAAEKATLGLFLTGHPIDRYEHELPYLATDRLQRLASGAGGS 1006 Query: 987 ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 RG ++ A +VV+ + + T G R+ +T + E FP Sbjct: 1007 GGDGNGGRGRSVTAAGLVVALRVRSTSTGGRLATLTLDDRTGRIEVVLFP 1056 >gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica ATCC 25845] gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica ATCC 25845] Length = 1239 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 351/1120 (31%), Positives = 540/1120 (48%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 +VHL VH++YS+L+G + ++DK AD +AITD +F EF+ Sbjct: 3 DYVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYCAKVNKGR 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +PI GC++ + + + +++L GY+ LI+LVS Sbjct: 63 KEKGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYTGYKNLIKLVSNA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ EGLI+ T +G + + + A + + ++FG Sbjct: 121 W-VDGYYYRPRTDREQLEKYH-EGLIVCTACIAGEVPNKIIHDDIEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + +V TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R+EM IFSD+PEA+ NT+EI + Sbjct: 239 AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVETYDI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++E Sbjct: 299 NHGPIMPFFPIPEDFGTEEEWKKKFTEEDLYKEFTTDENGENPLPPEEGQKVIDRLGGYE 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G + + + + + FEL+V+ M F GYFLI Sbjct: 359 KMYRIKFEADYLAKLAYDGAKKLYGDPL------SDEVKNHIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAARQELDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R V+++V +KYGHE A IIT+ ++ K +++DV R ++P + LCK Sbjct: 473 DTDFDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPVDVSNALCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVI 534 IP + + + AI + A +++ ++ ++ LEG R HA G +I Sbjct: 533 IPERLPNGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ + VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q RG +DL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 KQTRGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK+K +DK K +FI +NG I I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA+MK HYP E++AA MT + +I K ++ + I + P VN + F Sbjct: 833 YSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDVNESQIGF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+G + A I+ + P+ + DF RVD +NR+ ESL Sbjct: 893 GVNKHGEIRFGLSAIKGMGASAADSIVRERMENGPYKDIYDFAERVDLSNVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 ++G D FG R Q LD I +Y Q + + + ++F Sbjct: 953 YSGGFDSFGLQREQYFAVTAKGDLFLDTIVRYGQLFQAEKAQQQNSLFGGMDAIDVVHPI 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993 K + E+ ++G Y S HPLD Y +L M + + Sbjct: 1013 APKAEKWPVIEKLNKERELVGIYLSAHPLDEYSVVLNNMCNTRCSMIGRNANMTELAKAD 1072 Query: 994 NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 + +V S ++ + + G G+VT + E F Sbjct: 1073 EVTFGGIVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112 >gi|218129192|ref|ZP_03457996.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697] gi|217988570|gb|EEC54890.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697] Length = 1265 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 361/1147 (31%), Positives = 565/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC I +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G I + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 358 KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 418 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 472 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQVAEA 591 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + RGVK+D+ I D TY L T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 832 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 ++ I K + + I+++ P VN + F V + I + L A+KGVG IME Sbjct: 892 DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + P+ + DF RV+ N++ LE L AG D F R Q ++ Sbjct: 952 REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E G I + +V S ++ ++ G+ G + + Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAELPFF 1138 >gi|207091746|ref|ZP_03239533.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_AG0C1] Length = 1211 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +K GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKNEGLDFEDDASYFAHKVREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1] gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii RHA1] Length = 1178 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 316/1063 (29%), Positives = 521/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + ++ A+ +TD N++ A EF +A GI Sbjct: 2 ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 122 LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R +++++ E+P +ATN+ ++++E E H+ L+ + Sbjct: 181 WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y + + D + Sbjct: 241 TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + LR + + GL+ R G ++Y R D+E+ VI M F Sbjct: 301 MPIFPVPEGETQGTWLRKEVMRGLDRRFPDG------PPEEYLARADYEIGVILEMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAA++D R Sbjct: 415 PDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R ++P V ++ + ++ LEGL R+ Sbjct: 475 QITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++D + RG+ +DL + DD TY LL+ TLG+FQL+ S MR L MQP EDI Sbjct: 595 AIDNIKANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654 Query: 644 IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A+++LYRPGP+ Y +RKNG++++ IHP ++ LK +T G+I+YQEQ+MQ Sbjct: 655 VAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK +++ F G N S+ +++ + FA Sbjct: 715 IAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAA Y ++S+ T ++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876 PP VN V+F I + + A++ VG I++A +K F D+ +++D+ Sbjct: 835 PPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +++V ESL+ AG D G+ R L+ + +K ++F + S Sbjct: 895 CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESI 954 Query: 937 K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + +S R E+ +LG Y SGHPL+ + +L + Sbjct: 955 SSVFNVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIK 1013 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S ++ + G + E FFP Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056 >gi|317475168|ref|ZP_07934435.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|316908621|gb|EFV30308.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 1274 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 362/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 12 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 71 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC I +PIIGC++ + Sbjct: 72 KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 128 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + + R + L++ EGL Sbjct: 129 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G I + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 187 IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 246 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 247 QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++E Sbjct: 307 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKRYTE 366 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 367 KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDP 426 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 427 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 481 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AIA + A Sbjct: 541 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 601 SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + RGVK+D+ I D TY L T Sbjct: 661 EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 720 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 721 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G Sbjct: 781 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 841 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 ++ I K + + I+++ P VN + F V + I + L A+KGVG IME Sbjct: 901 DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 960 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + P+ + DF RV+ N++ LE L AG D F R Q ++ Sbjct: 961 REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1020 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1080 Query: 968 LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E G I + +V S ++ ++ G+ G + + Sbjct: 1081 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140 Query: 1026 EYEANFF 1032 E FF Sbjct: 1141 SAELPFF 1147 >gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] Length = 1178 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 326/1063 (30%), Positives = 526/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + ++ A + A+ +TD N++ A +F +A +AGI Sbjct: 2 ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 122 LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 181 WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y + + D +A Sbjct: 241 TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + ++ LR + + GL+ R G Q+Y R D+E+ VI M F Sbjct: 301 MPIFPVPEGHTQQTFLRAEVMRGLDRRFPSG------PPQEYLARADYEIGVINEMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I AK I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G+++VAQ+ITFG+++ KAA++D R Sbjct: 415 PDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R + P V ++ + + LEGL R+ Sbjct: 475 QITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ + RG+ +DL +P DD TY LL TLG+FQL+ GMR+ L+ MQP DI Sbjct: 595 TLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDI 654 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697 +A ++LYRPGP+ D + Y RKN E + IHP ++ L ET G+IIYQEQ+MQ Sbjct: 655 VAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 +AQ ++GY+L +AD+LRRAMGKK E++K F G N S+ +++ + FA Sbjct: 715 LAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSH+A Y ++SY TA++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876 PP VN VDF + I + + +++ VG I++A +K F D+ ++D+ Sbjct: 835 PPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N++V ESL+ AGA D G+ R L+ + +K ++F + S Sbjct: 895 CNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEADESI 954 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + +S R E+ +LG Y SGHPL+ + ILR+ + Sbjct: 955 TSVFDVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQ 1013 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + L ++ S ++ + G V + E FFP Sbjct: 1014 DGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1056 >gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4] Length = 1202 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 326/1063 (30%), Positives = 527/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + ++ A + A+ +TD N++ A +F +A +AGI Sbjct: 26 ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 85 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + I + + + ++ A G + L +L S Sbjct: 86 KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 145 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 146 LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 204 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R ++ + +P +ATN+ +++++ E H+ L+ + Sbjct: 205 WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 264 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y + + D +A Sbjct: 265 TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 324 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + ++ LR + + GL+ R G Q+Y R D+E+ VI M F Sbjct: 325 MPIFPVPEGHTQQTFLRAEVMRGLDRRFPSG------PPQEYLARADYEIGVINEMGFPA 378 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I AK I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+SM Sbjct: 379 YFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSM 438 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G+++VAQ+ITFG+++ KAA++D R Sbjct: 439 PDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIAD 498 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R + P V ++ + + LEGL R+ Sbjct: 499 QITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRN 558 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 559 AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 618 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ + RG+ +DL +P DD TY LL TLG+FQL+ GMR+ L+ MQP DI Sbjct: 619 TLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDI 678 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697 +A ++LYRPGP+ D + Y RKN E + IHP ++ L ET G+IIYQEQ+MQ Sbjct: 679 VAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQ 738 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 +AQ ++GY+L +AD+LRRAMGKK E++K F G N S+ +++ + FA Sbjct: 739 LAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFA 798 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSH+A Y ++SY TA++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 799 GYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVL 858 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876 PP VN VDF + I + + +++ VG I++A +K F D+ ++D+ Sbjct: 859 PPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMA 918 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N++V ESL+ AGA D G+ R L+ + +K ++F + S Sbjct: 919 CNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEADESI 978 Query: 937 ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + + +S R E+ +LG Y SGHPL+ + ILR+ + Sbjct: 979 TSVFDVKIPE-EEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQ 1037 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + L ++ S ++ + G V + E FFP Sbjct: 1038 DGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1080 >gi|228470784|ref|ZP_04055632.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3] gi|228307457|gb|EEK16462.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3] Length = 1272 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 342/1132 (30%), Positives = 557/1132 (49%), Gaps = 115/1132 (10%) Query: 5 LEKSPS-----------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53 ++ +P +V L VHS YS+L+G + I+DK A P IA+TD ++ Sbjct: 1 MDNTPDTPHSPSAGTRMYVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMY 60 Query: 54 SALEFSQKA------------CAAG------------------------------IQPII 71 F+ A + G + II Sbjct: 61 GIKNFTNYANDKINGDKLSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAII 120 Query: 72 GCQLDID-------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GC++ + +D N ++ + ++LL +GY+ LI++VS + Sbjct: 121 GCEVYVARRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAW-EHG 179 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI L E EG+I + G I + + A + +++ FG+ Y+ Sbjct: 180 EYYKPRIDKKLLTE-HHEGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYL 238 Query: 185 NLQRHRGYD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 + H D + +V+++ + ++ATN++ FL+EED EAHD L+ Sbjct: 239 EIMLHPNSDPLGGQETYQKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLIC 298 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + ++ +S +R R T +LK+ EM ++F+D P+ LENT+E+ + + HAP++P Sbjct: 299 MTTNSPISDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMP 358 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 F E E++ LR+ G + R + ++R+D EL VI M F Sbjct: 359 HFELPEGF---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGF 409 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+V DFI A+K + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+ Sbjct: 410 PGYFLVVQDFIAAARKLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRI 469 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD DIDF R V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q + Sbjct: 470 SMPDIDIDFDDKNRWRVLDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQAN 529 Query: 474 RLCKLIPNDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTH 528 RLCKLIP+ P V + ++ FREA + + + +++LEG H Sbjct: 530 RLCKLIPDRPPEGVKHLNLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVH 589 Query: 529 AAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A G++I P+S +VP+ D V Q+ K IE GLIK DFLGL+TL+++ Sbjct: 590 ACGVIISGPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIIND 649 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +L+ + G+ +D+ IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D+ Sbjct: 650 ALENIKVSYGIDLDIDTIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDL 709 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 +A+ +LYRPGP+DNI + RK+G+++I P ++P LK+T G+ +YQEQVM ++++L Sbjct: 710 VAMNALYRPGPMDNIPTFIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLG 769 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 ++ ++D LR+AMGKK ++EM K + +F+ G + I++ KFA Y FNK Sbjct: 770 DFTRGDSDSLRKAMGKKKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNK 829 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SH+ YA ++YQTA++K HYP +F+AA +T + +K+ K+ ++ + +++ P VN Sbjct: 830 SHSVCYAWVAYQTAYLKAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNE 889 Query: 824 PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F D I + L I VG + A I++ + + + DF R D +RR Sbjct: 890 SFTAFSANKDGVIRFGLGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRA 949 Query: 882 LESLVFAGALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHE 924 LE+L+ +GA D FG R + + +Y + +E RT Sbjct: 950 LEALILSGAFDSFGIDREVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQA 1009 Query: 925 NIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F + I + ++ R EQ +G Y S HPLD Y + + Sbjct: 1010 SLFGDSDPSVKLPKPIPPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIEYLCNCP 1069 Query: 983 YEESVATIR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + A +V +Q ++K + + + E F Sbjct: 1070 ASDLAQFAELGLTQLTCAGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLF 1121 >gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104] gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104] Length = 1177 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 322/1063 (30%), Positives = 521/1063 (49%), Gaps = 42/1063 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF A Sbjct: 1 MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59 Query: 65 AGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + I + + + ++ A G + L + Sbjct: 60 AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + + A + + Sbjct: 120 LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ Sbjct: 179 REIFGADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S +R + D Y + + D + Sbjct: 239 CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 + ++ + L ++ +AGL R G QDY R ++E+ VI Sbjct: 299 RDRMPVFPVPEGHDQASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 353 FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 413 PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472 Query: 471 QVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K P A + S + + + R DP V + + ++ LEGL Sbjct: 473 IADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT+ Sbjct: 533 IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 593 IGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652 Query: 641 EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ L ET G+I+YQEQ Sbjct: 653 NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 713 IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN V+F I + L A++ VG +++ + F D+ +++D Sbjct: 833 TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYLNKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N++V ESL+ AGA D ++R L + +K ++F + G Sbjct: 893 ISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGC 952 Query: 934 FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 953 TESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + E FFP Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055 >gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803] Length = 1461 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 349/1084 (32%), Positives = 550/1084 (50%), Gaps = 77/1084 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 F HL HS +S+L+ +S+ +++ A + A+A+TD N+ A F ++ Sbjct: 262 FAHLHNHSQFSVLQSTISIPDLIAAAADEDMNAVALTDHANMMGAFHFVKEIGTYNKSVK 321 Query: 62 -----ACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 A G ++ I+GC+ + + K+ +V+L GY Sbjct: 322 EHNATAEENGEDLKKPLKGIVGCEFFVC------ENHADKSRKDNGYQVVMLAKNKNGYH 375 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L ++ S+ Y D RI ++E E +I+LTG G + + AE+ Sbjct: 376 NLAKMSSKAYT-DGFYYVPRIDKEVIREY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEA 433 Query: 171 LLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 L+ +K+ FGD LY+ + RH D R +V+ + H++ L+ATNN+ + +ED AHD Sbjct: 434 LVWWKEEFGDDLYIEMMRHDQEDENRVNPVLVEFSKKHDVKLIATNNTYYWKQEDANAHD 493 Query: 230 VLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 +L+ V + ++Y K+ S+M +F DLP A+ N EI + Sbjct: 494 ILLCVKDGEKQATPIGRGRGYRYGLPNTEYYFKSGSQMKKLFKDLPNAISNIQEIVDKVE 553 Query: 283 FILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334 +LP F E D ++ E L++ G + R Sbjct: 554 SFELARDVLLPAFEIPEEFLSEEDLADGGKRGENAFLKHITFEGAKKRYPD-------IT 606 Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394 + +RL+FEL+VI + GYFLIV DFI+ A++ + VGPGRGS AGSV AY L IT+ Sbjct: 607 PEIEERLNFELSVIENTGYPGYFLIVEDFIRAAREMGVSVGPGRGSAAGSVVAYCLWITN 666 Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454 IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+G++ A Sbjct: 667 IDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQIITYGTMAA 726 Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREAR 502 K+++RD R L +P DR+ KLIPN + I + Sbjct: 727 KSSIRDTARVLDLPLMDSDRIAKLIPNTKLGKLFAMDDKTIKSKFRGDEIEKINELFNIS 786 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562 D + ++ LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 787 EGDDLEAETVNQARILEGSVRNTGIHACGVIITPGDITNYVPVSVAKDSDLYVTQFDNSV 846 Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIF 621 +E AGL+K DFLGLKTLTL++ ++ + R D P DD ETY L T+GIF Sbjct: 847 VESAGLLKMDFLGLKTLTLIKDTVKIVKGRHDIDLDPDSFPLDDEETYKLFQRGETVGIF 906 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681 Q ES GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E+I P ++ Sbjct: 907 QYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEISYDLPEMEEY 966 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 L+ET G+ +YQEQVM ++Q L+G+S EAD+LR+AMGKK+ + + K +FI G ++ G Sbjct: 967 LEETYGITVYQEQVMLLSQKLAGFSKGEADMLRKAMGKKLVALLAQLKPKFIEGGNEKGH 1026 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M++++ Sbjct: 1027 PAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKS 1086 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS--A 858 + F ++ ++ + ++ P VN F V DN + + + AIKGVG+ I+E Sbjct: 1087 VTFFMEECKRMKLNVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGSGAVATIVENRKTK 1146 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQK 910 + P+ S+ D R+D + N++ E+L AG D FG R Q L+ + K Sbjct: 1147 EGPYRSIFDMAKRIDLRSANKKAFENLALAGGFDGFGNTHRAQYFHDDGNGMSFLEKVVK 1206 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 YAQ ++++ + ++F + + + + E+ V+G Y SGHPLD Sbjct: 1207 YAQKFQESQNSSQVSLFGEASDVQIPEPEVPGCEEWGTMEKLRREKEVVGIYISGHPLDD 1266 Query: 971 YKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 +K + + + L +VV Q + ++ G T + + YE Sbjct: 1267 FKIEMSYFSNGKLSDCRDLESVVNRELTLGCVVVDVQHRVSKNGKGWAIFTVEDYDESYE 1326 Query: 1029 ANFF 1032 F Sbjct: 1327 FKIF 1330 >gi|188993898|ref|YP_001928150.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC 33277] gi|188593578|dbj|BAG32553.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC 33277] Length = 1228 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 363/1110 (32%), Positives = 571/1110 (51%), Gaps = 99/1110 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL VHS +SLL+G ++N+++DK AD P IA+TD +F EF Sbjct: 4 FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63 Query: 67 --------------------------------------------IQPIIGCQLDIDMQDN 82 +PI+GC+ + Sbjct: 64 ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123 Query: 83 LKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 NQ P+ + ++LL GY+ LI++VS + Q RI Sbjct: 124 FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDREL 182 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----- 190 LQ+ EG+I+ + G I + AE+ +L FK+LFGD Y+ +QRH Sbjct: 183 LQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNPL 241 Query: 191 ------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + +++L + ++ATN+ F +EED EAHD L+ ++ + + Sbjct: 242 GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R T ++K +EM +IF DLPE L NT+EI + F + ++P F Sbjct: 302 RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIP---PEY 358 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K++++ LR G + + + + ++R+DFEL I M F GYFLIV DFI Sbjct: 359 KDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDFI 412 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ + VGPGRGS AGS AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF Sbjct: 413 AAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDD 472 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483 D R E++R+V KYG ERVA IIT+G++ K++++DV R ++P + +RL KL+P+ Sbjct: 473 DGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKIP 532 Query: 484 --AHPVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +AI ++A L+ + L+ +Q LEG R+ HA GI+IG +S Sbjct: 533 GEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDIS 592 Query: 541 QLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 +VP+ D VTQ+ IE+ GLIK DFLGLKTL++++++L + +R Sbjct: 593 DVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGID 652 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++ IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP+ Sbjct: 653 LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPM 712 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+E I P ++ LKET GV +YQEQVM +++ L+G++ ++D LR+ Sbjct: 713 DYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRK 772 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK+ E+M+ K +F+ G +KNG + + I+ KFA Y FNKSHA Y+ ++YQ Sbjct: 773 AMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQ 832 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834 TA++K +YP E++A +++ ++N+ +I K + + I ++ P VN + F V + Sbjct: 833 TAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGD 892 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+KGVG+ I+ A+ + + DF R++ NR+ +ESL AGA D Sbjct: 893 IRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDS 952 Query: 894 FGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 F SR + + + + +Y V++ + ++ ++F E+ + Sbjct: 953 FALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTE 1012 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVV 1002 N R E+ ++G Y S +P+ Y+ IL + ++ G N+ LA +V Sbjct: 1013 PWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVT 1072 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q +R + +T + + E F Sbjct: 1073 KAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102 >gi|217031799|ref|ZP_03437302.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128] gi|298735572|ref|YP_003728093.1| DNA polymerase III subunit alpha [Helicobacter pylori B8] gi|216946451|gb|EEC25053.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128] gi|298354757|emb|CBI65629.1| DNA polymerase III subunit alpha [Helicobacter pylori B8] Length = 1211 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQKEEEN----------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKSYAKEEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ + ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYALKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|189468209|ref|ZP_03016994.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM 17393] gi|189436473|gb|EDV05458.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM 17393] Length = 1264 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 359/1140 (31%), Positives = 574/1140 (50%), Gaps = 122/1140 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF Sbjct: 3 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 59 ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84 + AGI +PIIGC++ + Sbjct: 63 KGEIKDLKKRMAGIESGEIACDDKEAELADCRAKIAEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFG+ Y+ LQRHR Sbjct: 178 IVCSACIGGEVPKKIINDQLEDAEEAIRWYKNLFGEDYYLELQRHRATIPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + L+ +N+ F++EE EAHD L+ ++ + +R T + Sbjct: 238 QKANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332 EE+ + + K + G E A Sbjct: 358 KDLFDEFTQDENGNVVLSEEDAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 +++ +RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS AY L I Sbjct: 418 LSEEVMERLKFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQI 477 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 T IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA IIT+G++ Sbjct: 478 TKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTM 537 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSVD 509 K A++DV R ++P S+ DRL KL+P+ AI + A DP V Sbjct: 538 ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVR 597 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEK 565 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 657 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GLIK DFLGLKTL++++++++ + RG+ +++ +P DD TY L + T+G FQ E Sbjct: 658 TGLIKMDFLGLKTLSIIKEAVENVRLHRGLALNIDKVPIDDPATYKLYSDGRTIGTFQFE 717 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK+ Sbjct: 718 SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKD 777 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPK 837 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I K Sbjct: 838 VLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITK 897 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 + + I+++ P VN + F V + I + L A+KGVG +IME + F Sbjct: 898 LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGSF 957 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914 + DF RV+ N++ LE L AG D F R Q L+ + +Y Sbjct: 958 KGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELRREQYFAVNSKNEVFLETLVRYGNR 1017 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + ++ ++F + + + + R E+ ++G Y S HPLD Y + Sbjct: 1018 YQADQAAAANSLFGGDNVVDIATPEIPEAERWSDLDRLNKERDLVGIYLSAHPLDEYSVV 1077 Query: 975 LRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 L+ + E + G I + +V S ++ ++ G+ G + + E FF Sbjct: 1078 LQHVCNTRMAELEDKTALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPFF 1137 >gi|239816093|ref|YP_002945003.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110] gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110] Length = 1172 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 411/1050 (39%), Positives = 600/1050 (57%), Gaps = 45/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ AAD+QPA+AITD NNLF A++F ++ + G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--S 128 IG ++ I+ + IVLLV EGY L EL++R + + G+ Sbjct: 62 IGAEIFIE---------GLGKEPGVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQ 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L WLQE+ GLI L+G +GP+ + A + L +F R Y+ LQR Sbjct: 113 AACKLEWLQEL-QGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V+LA LP+VAT+ F +DYEAH+ + ++ ++ R R Sbjct: 172 AGRPEDEPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ +EM ++F+D+P AL NTVEIA+RC+ L + P LP F + + Sbjct: 232 KFTEEQYFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRM 291 Query: 307 E-ENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + R ++ GLE L + Y +RL+FE+N I M F GYFLIV D Sbjct: 292 PIDEFFRQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FIKWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV++KYG + V+QI TFG++ A+AA+RDVGR L M Y D + KLIPN Sbjct: 412 CQGNRDRVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471 Query: 483 PAHPVSLQA--------------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 P PV++Q I + + + V L+E++QKLEG+ R+ H Sbjct: 472 PGQPVTIQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMH 531 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A G++I L+ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L+ + +F Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEF 591 Query: 589 LAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +R I DD ETY L + T +FQ ES GM+ L+ +P +ED+IA Sbjct: 592 IVKRHKGQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 L +LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GY Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKS 764 SL AD+LRRAMGKK EEM + +E+F +GA +GI + A IF+L+ KFA YGFNKS Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKS 771 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNT 823 HAAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA++ I PP VN Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNR 831 Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F+ V D I Y L A+KG G ++ A + PF SL DFC R+D +++N+R Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITL 940 +E+L+ AGA D +R L+ S+D + + +IF + G+ + + L Sbjct: 892 VEALIKAGAFDSIQQNRASLIASVD--RAFEFAAATEANAAQVDIFGDSEHGSATQEPEL 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + R E+ +GFY SGH D +R+ + + + T +A + Sbjct: 950 VDATPWGVKERLTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTREQQ--VIAGI 1007 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 V + ++G R+ + + +A Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSDAIDAT 1036 >gi|254779972|ref|YP_003058079.1| DNA polymerase III subunit alpha [Helicobacter pylori B38] gi|254001885|emb|CAX30135.1| DNA polymerase III alpha subunit [Helicobacter pylori B38] Length = 1211 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQKEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ R+ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKRVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMGGGIKEQVVLDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|296332089|ref|ZP_06874553.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675516|ref|YP_003867188.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296150860|gb|EFG91745.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413760|gb|ADM38879.1| DNA polymerase III, alpha subunit [Bacillus subtilis subsp. spizizenii str. W23] Length = 1115 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 383/1026 (37%), Positives = 583/1026 (56%), Gaps = 37/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEAERLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + DN +VLL + GYQ L+++ S + +G Sbjct: 62 IIGLTASVFTDDN----------GLEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 112 ----KWLHSY-REGIIAITPGEKGYIEMLLEEGLFEQAAQAALEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G + Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ + Sbjct: 167 FKGN-QALSEQILRLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 PD LK EM +I+ + PEAL+ +VEIA++C + + LP F + Sbjct: 226 -PDLDLKPLEEMQNIYREHPEALQESVEIAKQCRVDVSLGQTRLPSFPTPNG----TSAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L + +AGL G + Y +RL +EL VI RMKFS YFLIV DF+++A Sbjct: 281 DYLTDICMAGLR-------SRFGTPDERYLRRLQYELGVIKRMKFSDYFLIVWDFMKYAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GPGRGS AGS+ AY L ITD+DP+ LLFERFLNP+R+SMPD DIDF RRD Sbjct: 334 DKGIVTGPGRGSAAGSLVAYVLYITDVDPINHHLLFERFLNPERISMPDIDIDFPDTRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP P + Sbjct: 394 EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPARPGMTLD 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ +++K+EGL RH STHAAG+V+ + PL+ +VP+ + Sbjct: 454 EAR-KQSPQLDKRLRESSLLQQVYMVARKIEGLPRHTSTHAAGVVLSEEPLTDVVPLQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + D + Sbjct: 512 GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYRDDK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 572 TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK K+ +D+ Sbjct: 632 RAPVHYPHEDLRSILEDTYGVIVYQEQIMVIASRMAGFSLGEADLLRRAVSKKKKDILDQ 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP+ F Sbjct: 692 ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ I+I+PPSVN F V D + YSL AIK VG Sbjct: 752 MCGLLTSVIGNEDKIAQYLYEAKGSGIRILPPSVNKSSYPFTVEDGAVRYSLRAIKSVGI 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A +KPF+ L DFC RV SK +NR+ LE+L+F+GA+D FG +R LL S+D Sbjct: 812 SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKTLEALIFSGAMDEFGQNRATLLASIDV 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++ + + + +F E +FS K + E+ LG YFS HP Sbjct: 872 ALEHTELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L Y+ L G ++ + + L ++ + +T+ G + ++T S+ E Sbjct: 928 LSAYRKQLAAHGAVSILQAQQAFK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986 Query: 1028 EANFFP 1033 EA FP Sbjct: 987 EAVVFP 992 >gi|290961179|ref|YP_003492361.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22] gi|260650705|emb|CBG73821.1| DNA polymerase III alpha chain [Streptomyces scabiei 87.22] Length = 1179 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 531/1067 (49%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L + Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIDIEHRVREDLLRVGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR + Y S D +A + + + Sbjct: 239 CIQTGKNLSDPDRFKFDGTGYYLK-STEEMYAVDSSDAWQEGCANTLLVAEQIDTSGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E R + + G+ R G D +++++E++ I M Sbjct: 298 ARNLMPKFDIPEGFTEVTWFREETMRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAKK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +T+ LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ + Y RKN +++I IH ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHINYAERKNKRQEITPIHKELEEPLEEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK EE+ K F +GA +NG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGAKRNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VGT I+ + + S D+ +V+ Sbjct: 832 VLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L D++ V++ ++F Sbjct: 892 AVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEE 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S + + E+ +LG Y S HPL + +L G + Sbjct: 952 ESSEPGFGLDVEFTTDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter hongkongensis HLHK9] gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter hongkongensis HLHK9] Length = 1147 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 378/1039 (36%), Positives = 585/1039 (56%), Gaps = 32/1039 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P F+HL++HS +S+ +G + + + + A ++ PA+ ++D NLF ++F + G Sbjct: 2 NTPRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+ ++ +L+ GY RL EL++ Y L+Q + Sbjct: 62 VKPIVAVDAWLENP----------ADRDQPSRCLLIAMNTAGYHRLSELLTDAYRLNQYR 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + WL E LI ++G G +A + ++A+ + + F R Y+ + Sbjct: 112 GRAELQREWLTREACENLIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEI 171 Query: 187 QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QR + +++ LA LP+VAT+ FL +D+ AH+ + +A ++ R Sbjct: 172 QRTGKPEADTCTERMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPKR 231 Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R T + Y K+ EM ++F+D+PEALEN+VEIARRC+ + + LP F + + Sbjct: 232 VRHYTEEQYFKSTDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSL- 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361 ++ L ++ GL R+ G + YR+RL FEL+ I +M F GYFLIVA Sbjct: 291 ---DDYLIKRSEEGLVERMQALYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLIVA 347 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK N PVGPGRGSGAGS+ A+++ ITDI+PL ++LLFERFLNP+R+SMPDFDID Sbjct: 348 DFINWAKANGCPVGPGRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFDID 407 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQD R VI YV+ +YG + V+QI TFG++ AKA +RDVGR L +PYS D L KLIP Sbjct: 408 FCQDNRWRVIEYVRERYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLIPA 467 Query: 482 DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P S A+ + +E + V +L +++KLEGL R+ HA G++I ++ Sbjct: 468 APGKQYSLDDAVEMEPILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGKIT 527 Query: 541 QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--D 597 PMY+ D PV+ + +E GL+KFDFLGL+ LT++ +++++ D Sbjct: 528 DFCPMYQASGDDASPVSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALDPAFDLD 587 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ +PF D Y +L T +FQLES GM++ LE ++PD EDIIA+++LYRPGP+ + Sbjct: 588 LNHMPFTDPAAYRVLQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPLGS 647 Query: 658 IVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + K+++ HP + L T GVI+YQEQVMQI+Q++ GY+L AD+LRR Sbjct: 648 GMVDDFILRKAGKQEVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K + F GA K G K +A ++F+L+AKFA+YGFNKSH AAYAV+SYQ Sbjct: 708 AMGKKKPEEMAKHRGIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834 TAW+K HYP F+AA+M+ E+DN ++++ F D+ ++ +PP +N F D R Sbjct: 768 TAWLKAHYPSAFMAATMSSELDNTDQLRVFYDDSLANQLEFLPPDINESVYRFVPVDARR 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G HI + F L DFC R D + +NRR +E+L+ AGA D Sbjct: 828 IRYALGAIKGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAFDT 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R +L+ +++ A+ ++ + +F + + + + + + + R Sbjct: 888 LEPNRARLIANVELAMTMAE--QEAQNANQGGLFDLLDTSAAPAVEMMQVRPWDEATRLT 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ +GF+ SGHP + +R++ LA ++ + K +G Sbjct: 946 EEKTAIGFFLSGHPFHAHADTVRRLVKTPLNRIAPKKEPQ--WLAGTIMGVRTKVGNRGK 1003 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + +V + + E +FF Sbjct: 1004 -MAFVQLDDGTAKLEVSFF 1021 >gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13] gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13] Length = 1156 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 410/1042 (39%), Positives = 604/1042 (57%), Gaps = 38/1042 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 F+HL+ HS YS+ +G + L + + + ++AI+D +N+F+A++F + A + Sbjct: 4 NSESKFIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSN 63 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PIIG + I DN ++L+ +GY L +L+SR Y +Q Sbjct: 64 GIKPIIGADVYIQNDDNRDQP----------SRLLLICQNKQGYLNLSKLLSRAYTENQY 113 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I WL GLI L+G + G I + A K+ F DR Y+ Sbjct: 114 RDRPEIKFEWLFSDFNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLE 173 Query: 186 LQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +QR+ + E + QL Y ++PLVAT F+ +ED++AH+ +A V+ Sbjct: 174 VQRYEVEKKVEEQENLVLAIAQLGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVL 233 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + RP+ T + Y K +EM +F D+P A+ NT+EI++RC+F ++ LP F E Sbjct: 234 GDQRRPKNFTAEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPE 293 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGY 356 L N A+ GLE +L + Y RL FE+NVI +M ++GY Sbjct: 294 G----LTVNEYLENTAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGY 349 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIVADFI WAK+NN+PVGPGRGSGAGSV A+AL ITD+DPL ++LLFERFLNP+R+SMP Sbjct: 350 FLIVADFINWAKENNVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMP 409 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ+ RD VI YV+ +YG++ V+QI+TFG++ A+A +RDVGR L +P+ VD + Sbjct: 410 DFDIDFCQEGRDRVIEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIA 469 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 KLIP + + I + + ++ + V L +++ KLEGL R+ HA G++I Sbjct: 470 KLIPMELGISLKDA-IEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAP 528 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593 +S P+Y + V+QF+ +E GLIKFDFLGL+TLT+L +L+ + Sbjct: 529 GKISDYSPLYCQEGGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATE 588 Query: 594 --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 + L IP DD ET+ L+ T +FQLES GM+ L+ +PDC EDIIALV+LYR Sbjct: 589 GKPPIYLDDIPLDDEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 648 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+D I + RK+G++ + HP + +LKET G+ +YQEQVMQIAQ ++GY+L AD Sbjct: 649 PGPMDLIPDFCKRKHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEMD Q+E FI GA++NG+ K A N+F+LL KFA YGFNKSHAAAYA Sbjct: 709 LLRRAMGKKKVEEMDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAK 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830 I+YQTA++K HY F+AASM+ +M+N + I D I+++PPS+N F+ Sbjct: 769 IAYQTAYLKRHYTSSFIAASMSADMNNTDNIALLFDDCVLNKIKLLPPSINNSVFRFQPL 828 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D I Y L AIKG G I+E + P+ SL +FC+R+D +K+NR+V+ESL+ AG Sbjct: 829 NDKEILYGLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAG 888 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D +R LL S++ A+ + + +++F E + +S Sbjct: 889 AFDELEKNRASLLASINQAISLAEQSKSH--MGQDSLFGEEAN--KEVTNYVATDEWDSK 944 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + E+ LGFY+SGHP YK ++R M + ++ + L+ +V++ + + T Sbjct: 945 RQIYEEKVALGFYYSGHPFSHYKEMVRAMYPQSLRDARPSNNNQ--WLSGVVMAARNRMT 1002 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 ++G I VT + + Sbjct: 1003 QRGK-IAIVTLDDGEGRLDMIV 1023 >gi|256825465|ref|YP_003149425.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547] gi|256688858|gb|ACV06660.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547] Length = 1183 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 353/1063 (33%), Positives = 535/1063 (50%), Gaps = 53/1063 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA ++++ PAIA TD ++F A EF K+ +PI Sbjct: 10 FVHLHNHTEYSMLDGAARIDDMFTVADEMGMPAIASTDHGSVFGAYEFWSKSRKFETKPI 69 Query: 71 IGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 +G + + + + + + T EG L S + Sbjct: 70 VGVEAYLTPGTHRTDKTRVKFGDGGRNDVSGSGAYTHMTMWAETTEGMHNLFRASSLASI 129 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180 + R+ L G +G+I TG SG + A++ F+ +FG D Sbjct: 130 -EGFYFKPRMDRELLDRYG-KGIIATTGCPSGEVQTRLRLGQYDKAKEAAAEFRDIFGKD 187 Query: 181 RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 + L H +R + +++LA +LPLVATN+ + +ED +AH L+ V + Sbjct: 188 NFFCELMDHGLDIERQVRADLLKLAKELDLPLVATNDLHYTHKEDAKAHGALLCVQSGST 247 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + +R + + + YLK+ +EM ++ ++PEA +NT+ IA RC+ R++ + Sbjct: 248 LMDPNRFKFDSDEFYLKSAAEMRHLWREVPEACDNTLLIAERCNVEFTEGE---GRYMPR 304 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 +E + ++ GL R +G Y E +VI + GYFL Sbjct: 305 FPCPDGHDETSWFISEVQTGLARRFPEGVPDYALKQAAY------EQDVIINKGYPGYFL 358 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+ L+FERFLNP+R SMPDF Sbjct: 359 VVADFINWAKENGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERASMPDF 418 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF + RR EVI+YV KYG +RVA I+T+G+++AK AL+D R + P++ ++L K Sbjct: 419 DVDFDERRRPEVIKYVTEKYGSDRVAMIVTYGTIKAKQALKDASRVMGFPFATGEKLTKA 478 Query: 479 IPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +P + L I D+ FRE DP + + + LEGL R HA Sbjct: 479 MPPAVMGKDIPLSGIFDEKHPRYAEAIDFRELHANDPEAREVFDTAVGLEGLKRQWGVHA 538 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS---L 586 AG+++ PL L+P+ R +TQF+ E GL+K DFLGL+ LT+L + + Sbjct: 539 AGVIMASEPLIDLIPIMRREADGQIITQFDYPSCETLGLVKMDFLGLRNLTILDDAIANI 598 Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + + +D D Y LL TLG+FQL+ GMR L MQPD EDI A Sbjct: 599 EMNREETIDLDALSKDMTDPAAYKLLARGDTLGVFQLDGGGMRSLLRLMQPDNFEDISAA 658 Query: 647 VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQ 700 ++LYRPGP+ + + RKNGK+ + IHP ++P+LK T G+IIYQEQVM+IAQ Sbjct: 659 LALYRPGPMGANAHTNFALRKNGKQPVDYIHPELTEALEPILKMTYGLIIYQEQVMEIAQ 718 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 L+GY+L AD+LRRAMGKK KE +D + F +G NG SK ++ +L F+DY Sbjct: 719 KLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEAGMLANGYSKDAVETLWGILLPFSDYA 778 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNK+H AAY V+SY TA++K +Y E++AA +T D+ +K + + R+ I+++PP Sbjct: 779 FNKAHTAAYGVVSYWTAYLKANYRAEYMAALLTSVRDDKDKSALYLGECRRMGIKVLPPD 838 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 VN +F I + L AI+ VG R I+ + F S EDF + + N+ Sbjct: 839 VNESIANFAAVGQDIRFGLEAIRNVGGNVVRAIVATREEKGKFTSFEDFLRKCPAVVCNK 898 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-- 937 R ++SL+ AGA D G+ R L + +K + E++FA G D Sbjct: 899 RTIDSLIKAGAFDDLGHQRQALATVHEAYVDALVGEKKEQERGQESLFASLMGDGGDDAS 958 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---T 989 + + E+ +LG Y S HPL + L + + Sbjct: 959 SIGGMPAIPDL-EWDKQTLLAFEREMLGLYVSDHPLFGIEHALSRASDTSIAHLNSEDGR 1017 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ K+ ++G T + E FF Sbjct: 1018 PDGAEVTIAGLITQVVTKRNKRGELWAIATVEDLEGSIECLFF 1060 >gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 1170 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 420/1057 (39%), Positives = 616/1057 (58%), Gaps = 49/1057 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P FVHL++HS YS+++G + L++ + AAD A+A+TD N F + + ++A G Sbjct: 2 SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + + ++ ++LLV GY L L+SR +L +Q + Sbjct: 62 VKPVVGADVWLTNAEDRDKPA----------RLLLLVQDRRGYLNLCMLLSRAWLGNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I +W QE G + GLI L+G G I A ++ A + + +F Sbjct: 112 GRAEIDPAWFQEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQ 171 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R Y+ LQR H G D Y Q VQLA + +LP+VAT+ F++ +DY AH+ + +A Sbjct: 172 RFYIELQRAGHAGTDAYV-QQAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGE 230 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T D Y K + EM ++F+D+P ALEN VEIARRC+ L++ P LP F Sbjct: 231 LLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPT 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ L A GLE RLA + +Y RL+FE I +M F Sbjct: 291 PDGMSL----DDYLVFMAKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S Sbjct: 347 GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y VD Sbjct: 407 MPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDG 466 Query: 475 LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V+++ ++ E + V +LLE++Q++EG+ R+ HA G++ Sbjct: 467 IAKLIPFKPGKLVTIEEAKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 I L+ P+Y + V+Q++ +E AGL+KFDFLGL TLT+L + ++ Sbjct: 527 IAPGKLTDFCPLYTQGGQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 586 Query: 590 AQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + + S IP DD + +L T T+ +FQLES GM+ L+ +PD EDIIAL Sbjct: 587 RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 646 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYS Sbjct: 647 VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 706 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 L AD+LRRAMGKK EEM + + F GA KNG+S A +IF+L+ KFA YGFNKSHA Sbjct: 707 LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 766 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K +D + I ++PP VN Sbjct: 767 AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 826 Query: 827 DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F D I Y L IKG G I+ A ++PF L DFC RVD +++NRR +E+L Sbjct: 827 RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 886 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944 + AGA D +R QLL S+ + A+ +K + ++F + L Sbjct: 887 IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELLDEP 944 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR-- 996 + + E++ LG+YFSGH D Y+ +R+ ++ G ++R Sbjct: 945 RWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRGK 1004 Query: 997 -LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A ++ + + T++G + VT + E F Sbjct: 1005 TIAGVISGMRTQMTQRGK-MLIVTLDDGTGLVEMTVF 1040 >gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12] Length = 1264 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 354/1146 (30%), Positives = 563/1146 (49%), Gaps = 134/1146 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF Sbjct: 3 DFVHLHVHTQYSLLDGQASVSALVDKAIKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62 Query: 59 ---------SQKACAAG-------------------------IQPIIGCQLDIDMQDNLK 84 A AG +PIIGC++ + Sbjct: 63 KGEIKDLKKWIAAIEAGEVDCADKEAEIADCKAKIVEAEGRLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + + L+ TN+ F++EE EAHD L+ ++ + +R T + Sbjct: 238 VNVNKHLIEYAKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ G + Sbjct: 358 KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS Sbjct: 418 L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA I Sbjct: 472 AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503 IT+G++ K A++DV R ++P ++ DRL KL+P+ AI + A Sbjct: 532 ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618 IE GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+ Sbjct: 652 GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P++ Sbjct: 712 GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G K Sbjct: 772 EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N Sbjct: 832 NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856 + I K + + +Q + P VN + F + I + L A+KGVG + IM E Sbjct: 892 ITDITKLMDECKAMGVQTLGPDVNESNLKFTANRNGNIRFGLGAVKGVGEAAVQSIMEER 951 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 952 RENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNAKGETFLETL 1011 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + ++ ++F + + N R E+ ++G Y S HPL Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071 Query: 969 DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L + E A + G I + +V S ++ ++ G+ G + + Sbjct: 1072 DEYAIVLEHVCNTRMIELDDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131 Query: 1027 YEANFF 1032 E FF Sbjct: 1132 AEIPFF 1137 >gi|225619527|ref|YP_002720784.1| DNA polymerase III subunit alpha [Brachyspira hyodysenteriae WA1] gi|225214346|gb|ACN83080.1| DNA polymerase III, alpha subunit [Brachyspira hyodysenteriae WA1] Length = 1236 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 364/1035 (35%), Positives = 576/1035 (55%), Gaps = 34/1035 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55 SFVHL VH+ YS+L+GA + ++ +D+ P IA+TD N+F A Sbjct: 2 SFVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGA 61 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +EF +A GI PIIGC++ + + + + + ++LL EGY L +L Sbjct: 62 MEFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIEN-SEEKSAMHLILLAKDKEGYNNLCKL 120 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 V+ Y + R+ +++ +GLI L+ G I A + A K +K Sbjct: 121 VTFGYT-EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178 Query: 176 KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG+ Y+ LQ H + S + QLA H + LV TN+ ++S+ED +AH++L+A+ Sbjct: 179 SIFGNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAI 238 Query: 235 AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + R + + + +LK EM+ F+ LP+A ENTV+IA +C ++ Sbjct: 239 QTKATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQ---DLNIMTKT 295 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ + E LRN + GL ++ RL+ EL VI +M F Sbjct: 296 YYMPNYELPNGETETTALRNMCMDGLNKYYNNN------IPKEAMDRLEMELGVIGKMGF 349 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP+R Sbjct: 350 EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERK 409 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPD D+DF D+R+ +I YV+ KYG + V+QI TFG+L ++ +RDV R + + + D Sbjct: 410 SMPDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATAD 469 Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 RL K IP+D V + D + + + + + EIS +L+GL R+ HAAG++ Sbjct: 470 RLAKSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAAGVI 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I P+ L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + R Sbjct: 530 ISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDRY 589 Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +++D+ IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+LYRP Sbjct: 590 GIEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYRP 649 Query: 653 GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GP+++ + Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +EA Sbjct: 650 GPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAEA 709 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKKI E+M+ +E+FI G + G K + +F+ + FA+YGFNKSH+ YA Sbjct: 710 DDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCYA 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I+YQ A++K HYP+E+ A + + + +KI + + +Q NI+I+ SV F Sbjct: 770 LIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFESDALFSQ 829 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D +I Y+L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ G Sbjct: 830 KDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 889 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947 A FG++ LL SLD I +A +K + +F E + S + +EK Sbjct: 890 AFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEYA 949 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 S++ ENE+ VLGF HP Y + + + L +V+S + Sbjct: 950 SNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTLDIDNLKDKDEFLLPCVVMSASET 1009 Query: 1008 KTRKGSRIGWVTFSE 1022 T+K + + + + Sbjct: 1010 TTKKNTPMITLKVID 1024 >gi|34539911|ref|NP_904390.1| DNA polymerase III subunit alpha [Porphyromonas gingivalis W83] gi|34396222|gb|AAQ65289.1| DNA polymerase III, alpha subunit [Porphyromonas gingivalis W83] Length = 1228 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 362/1110 (32%), Positives = 570/1110 (51%), Gaps = 99/1110 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL VHS +SLL+G ++N+++DK AD P IA+TD +F EF Sbjct: 4 FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63 Query: 67 --------------------------------------------IQPIIGCQLDIDMQDN 82 +PI+GC+ + Sbjct: 64 ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123 Query: 83 LKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135 NQ P+ + ++LL GY+ LI++VS + Q RI Sbjct: 124 FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDKEL 182 Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----- 190 LQ+ EG+I+ + G I + AE+ +L FK+LFGD Y+ +QRH Sbjct: 183 LQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNPL 241 Query: 191 ------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + +++L + ++ATN+ F +EED EAHD L+ ++ + + Sbjct: 242 GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R R T ++K +EM +IF DLPE L NT+EI + + ++P F Sbjct: 302 RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIP---PEY 358 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 K++++ LR G + + + + ++R+DFEL I M F GYFLIV DFI Sbjct: 359 KDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDFI 412 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ + VGPGRGS AGS AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF Sbjct: 413 AAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDD 472 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483 D R E++R+V KYG ERVA IIT+G++ K++++DV R ++P + +RL KL+P+ Sbjct: 473 DGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKIP 532 Query: 484 --AHPVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +AI ++A L+ + L+ +Q LEG R+ HA GI+IG +S Sbjct: 533 GEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDIS 592 Query: 541 QLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 +VP+ D VTQ+ IE+ GLIK DFLGLKTL++++++L + +R Sbjct: 593 DVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGID 652 Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 ++ IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP+ Sbjct: 653 LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPM 712 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + RK+G+E I P ++ LKET GV +YQEQVM +++ L+G++ ++D LR+ Sbjct: 713 DYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRK 772 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK+ E+M+ K +F+ G +KNG + + I+ KFA Y FNKSHA Y+ ++YQ Sbjct: 773 AMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQ 832 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834 TA++K +YP E++A +++ ++N+ +I K + + I ++ P VN + F V + Sbjct: 833 TAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGD 892 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I + L+A+KGVG+ I+ A+ + + DF R++ NR+ +ESL AGA D Sbjct: 893 IRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDS 952 Query: 894 FGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 F SR + + + + +Y V++ + ++ ++F E+ + Sbjct: 953 FALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTE 1012 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVV 1002 N R E+ ++G Y S +P+ Y+ IL + ++ G N+ LA +V Sbjct: 1013 PWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVT 1072 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q +R + +T + + E F Sbjct: 1073 KAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102 >gi|317011593|gb|ADU85340.1| DNA polymerase III subunit alpha [Helicobacter pylori SouthAfrica7] Length = 1211 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++K+ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----ASKETKQRFHLCLFAKNQEGYENLMYLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHEQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDIAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG+ ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + +LEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKNLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F + +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLDEFKEEVK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010] gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010] Length = 1241 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 342/1122 (30%), Positives = 541/1122 (48%), Gaps = 109/1122 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 ++HL VH+ YS+L+G +NN++DK D +AITD +F EF+ Sbjct: 3 DYIHLHVHTHYSILDGQSKINNLVDKAIKDGMKGMAITDHGVMFGIKEFADYCAKKNKER 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +PI GC++ + + + + +V+L GY+ LI+LVS Sbjct: 63 KANGEEPFKPIFGCEMYVARRKQTDKVKE--MHDNSGYHLVVLAKNYNGYKNLIKLVSNA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ T +G I + A + L +K LFG Sbjct: 121 W-VDGYYYRPRTDREQLEKYH-EDLIVCTACLAGEIPAKIRKGDIEGAREACLWYKNLFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ LQRH D + ++Q + + + LV TN+S F +E E Sbjct: 179 EDFYLELQRHEVTDPTLIANREAYPLQQQVNKVLMQFSKEYGIKLVCTNDSHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R EM +F D+PEA+ NT+EI + Sbjct: 239 AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTREEMNQVFEDVPEAMANTIEILNKVEMYNI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++E Sbjct: 299 DHGPIMPFFPIPEDFGTEEEWRQKFSEEDLLKEFTSDENGENPLPEDEAKKVIERLGGYE 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L + G + +++ R+ FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLSYDGAKRLYGDQL------SEEVDSRIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAENELGVIVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE A IIT+ ++ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDRSNALCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI+ +EA + ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGLKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDDWVPVSTATDPDYPDQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q ++D+ IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 KQTTGKEIDIEKIPIDDELTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+ + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKHDPTLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKVLEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I+ + P VN + F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+GT A +I++ + P+ + DF RVD +NR+V+E+L Sbjct: 893 GVNKRGEIRFGLSAIKGIGTGAAENIVKERETNGPYKDIFDFVERVDLSSINRKVIENLA 952 Query: 887 FAGALDCFG-YSRMQLL--------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 ++G D G +R + LD + +Y Q + ++ ++F + Sbjct: 953 YSGGFDSLGTITRREEYFGVNSKGEAFLDTLLRYGQLYQTSKAEAANSLFGGFDSIPVAR 1012 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------ 991 + + + E+ ++G Y S HPLD + +L + + Sbjct: 1013 PAVPPAEAWANIEKLNKERELVGIYLSAHPLDEFSVVLNHLCNTHCSQISRNADMVALAK 1072 Query: 992 GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + + G +VT + E F Sbjct: 1073 TEELTFGGIVTNVREAFSQKTGKPYAFVTIEDFEGVGEIALF 1114 >gi|21220545|ref|NP_626324.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)] gi|256788317|ref|ZP_05526748.1| DNA polymerase III subunit alpha [Streptomyces lividans TK24] gi|289772211|ref|ZP_06531589.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans TK24] gi|14194704|sp|Q9Z618|DPO3A_STRCO RecName: Full=DNA polymerase III subunit alpha gi|4324655|gb|AAD16978.1| DNA polymerase III alpha subunit [Streptomyces coelicolor A3(2)] gi|5596809|emb|CAB51456.1| DNA polymerase III alpha chain [Streptomyces coelicolor A3(2)] gi|289702410|gb|EFD69839.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans TK24] Length = 1179 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 536/1067 (50%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + ++G L Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + R + ++ Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + G+E R G +D +++ ++E++VI +M Sbjct: 298 KRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPGGV------PEDRQKQAEYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + + ++ R ++P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +DL +P DD T+ LL TLG+FQ + MR L M+PD E Sbjct: 592 DDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG ++I IH ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY T ++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L+A++ VGT I++ + S D+ +V+ Sbjct: 832 VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 892 AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDE 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 SD+ + + E+ +LG Y S HPL + +L G + Sbjct: 952 QSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058 >gi|15612418|ref|NP_224071.1| DNA polymerase III subunit alpha [Helicobacter pylori J99] gi|11132624|sp|Q9ZJF9|DPO3A_HELPJ RecName: Full=DNA polymerase III subunit alpha gi|4155965|gb|AAD06929.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99] Length = 1211 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL RL + + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERL---ILVPEEKHEQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|238063859|ref|ZP_04608568.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149] gi|237885670|gb|EEP74498.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149] Length = 1179 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 345/1068 (32%), Positives = 525/1068 (49%), Gaps = 56/1068 (5%) Query: 10 SFVHLQVHSSYSLLEG------ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 SF HL VH+ YS+L+G S PA+A+TD N+ A +F ++A Sbjct: 4 SFAHLHVHTEYSMLDGCGPGSRTSSPRP-----TGSGMPAVAMTDHGNMHGANDFYKQAM 58 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113 AAGI PI+G + + + + + + + + G L Sbjct: 59 AAGITPILGVEAYVAPESRYHKARVKWGRPEQKSDDVSGNGAITHMTMWAANKTGLHNLF 118 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L SR + + R+ + + E EG++ TG SG + A K Sbjct: 119 TLNSRASMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVASA 177 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FG D ++ L H +R + ++ +P V TN+S + E EAHDVL Sbjct: 178 YQDIFGRDNYFLELMDHGLDIERRVRDGLTEIGKKLGIPPVVTNDSHYTHEAQAEAHDVL 237 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + V + ++ +R R Y +E + LE + Sbjct: 238 LCVQTGSNIADPNRFRFEGGGYFIKSAEQMRAVDSSQLWLEGCRNTLLVAEKVDPAGMFE 297 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + EE+ R + GL R G +Y EL VI +M Sbjct: 298 FHNLMPRFPVPEGETEESWFRKETFKGLARRFPGGVPEGHVVQAEY------ELGVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+VADFI WAK I VGPGRGS AGS+ AYAL ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPSYFLVVADFIGWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAV 471 Query: 472 VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P + A+ R +DP V ++++ ++ +EGL Sbjct: 472 GDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIDTAKGIEGLI 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ + +P+ R + +TQF+ E GL+K DFLGL+ LT++ Sbjct: 532 RQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTII 591 Query: 583 QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ G +DL + DD Y LL TLG+FQL+ MR L M+PD E Sbjct: 592 DDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFE 651 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML----KETQGVIIYQEQV 695 DI A+++LYRPGP+ D+ Y RKNG ++I IHP ++ L T G+I+YQEQV Sbjct: 652 DISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTHGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+L+GY+L +AD+LRRAMGKK KE +DK+ F G + G S ++++L Sbjct: 712 QRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRERGYSDEAIQAVWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R+ IQ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQ 831 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874 ++PP VNT F I + LAAI+ VG IM D + DF ++VD+ Sbjct: 832 VLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGANVVASIMRCRQDKGEYADFYDFLAKVDA 891 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------ 928 N++ +ESL+ AGA D G++R LL + V++ ++F Sbjct: 892 VVCNKKTIESLIKAGAFDVMGHTRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFGDA 951 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 G + + + + + E+ +LG Y S HPL + +L Sbjct: 952 EAAGGSTTVMPTIGEAEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSE 1011 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + LA ++ Q++ T++G T + A E FFP Sbjct: 1012 EGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1059 >gi|270294536|ref|ZP_06200738.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276003|gb|EFA21863.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1265 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 360/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84 + A I +PI+GC++ + Sbjct: 63 KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++LA +++ ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM ++F D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 358 KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 418 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 472 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL+++++++ + RG+++D+ I D TY L T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FISG Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 832 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ I K + + I + P VN + F V + I + L A+KGVG + IME Sbjct: 892 NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + PF + DF RV+ N++ LE L AG D F R Q L+ Sbjct: 952 REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E + G I + +V + ++ ++ G+ G + + Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAELPFF 1138 >gi|315639407|ref|ZP_07894567.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter upsaliensis JV21] gi|315480512|gb|EFU71156.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter upsaliensis JV21] Length = 1197 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 373/1060 (35%), Positives = 592/1060 (55%), Gaps = 49/1060 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YS+L+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D+L + L GY+ L+ L S+ Y+ R Sbjct: 64 IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +K++FGD Sbjct: 118 INKKLLEK-HSEGLICSSACLQGEVNWHLNIYNERNVRFGAKGYEAAKEAALWYKRVFGD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ ++ ++ATN++ + +E EAH+V M + Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295 ++ DR R + + Y+K +M +F+D+PEA+ NT ++A +C+ L++ P P F Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296 Query: 296 -----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 +++ + + ++ + GLE RL +Y+ RL+ E Sbjct: 297 REYAKEFDITLPQEKVEFSFENDDLVFEHLCRKGLEERLK---FVDEGKHDEYKARLETE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + +I MKFSGY LIV DFI+ AK NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVIDYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + VD KL+P + + +A + + +E P L E ++ LEGL R+ Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L P++R ++D +TQ++ +E LIKFDFLGLKTLTL+ Sbjct: 533 AGMHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592 Query: 583 QKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 D+IA+++LYRPGP+++ + + +RK+G +KI+ ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K+ F +GA K G ++ A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E + + ++ ++ NI+++PP Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 +N +F I Y L AIK VG +++E + F L DF S++D Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + K+NRR LE + AG+ D FG++R L +LD + + A+ + + R N ++F E+ Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952 Query: 934 FSDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 KI + S + + E+ +LG Y SGHPLD + + + + G Sbjct: 953 ADTKINIVVDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I V + + ++ G R G + + +E F Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFEVTIF 1052 >gi|210135627|ref|YP_002302066.1| DNA polymerase III subunit alpha [Helicobacter pylori P12] gi|210133595|gb|ACJ08586.1| DNA polymerase III alpha-subunit [Helicobacter pylori P12] Length = 1211 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 370/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A++ + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKNEGLSFEDDASYFAHKAREGLKERL---ILVPKEKHEQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+ MPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ + ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + +D + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755] Length = 1452 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 355/1078 (32%), Positives = 555/1078 (51%), Gaps = 69/1078 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66 SFVHL H+ +S+L+ +++ +++ A PA+AITD N+ A F Sbjct: 260 SSFVHLHNHTQFSVLQSTMAVPDLVAAAAKHNMPAVAITDHANMMGAFHFVNAVKKHNSA 319 Query: 67 -----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIGC+ + + +T +V+L +GY L ++ Sbjct: 320 IANDSENTSQPIKPIIGCEFFVCED------HTDRTHKDNGYQMVILAKNKKGYHNLAKM 373 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S + RI L E + LI+L+G G I AE+ L+ +K Sbjct: 374 SSMGFTKG-FYYIPRIDKK-LIETYKDDLIVLSGSLYGEIASKLLNLGENQAEESLVWWK 431 Query: 176 KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 + FGD YV + RH+ D R +++LA H++ LVATNN+ + ++D AHD+L+ V Sbjct: 432 ETFGDDFYVEIMRHQQEDEERANEALIRLANKHDINLVATNNTYYADQKDANAHDILLCV 491 Query: 235 AHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + +Y K+ EM S+F DLP+A+ NT IA + Sbjct: 492 KEGEKQATPIGRGRGYRYGLPNDQYYFKSAEEMKSLFKDLPQAISNTEAIANKVEAFELA 551 Query: 288 HAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339 +LP F+ E D ++ E L++ G + G +++ + Sbjct: 552 REVLLPAFVIPEQFLDEADKTDAGKRGENAYLKHLTFEGAKR-------RYGELSEEIKD 604 Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399 RLDFEL+VIA + GYFLIV DFI+ A+K + VGPGRGS AGS AY L IT+IDP++ Sbjct: 605 RLDFELSVIANTGYPGYFLIVEDFIREARKMGVSVGPGRGSAAGSAVAYCLKITNIDPIK 664 Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459 + LLFERFLNP+R+SMPD DIDF + R +V+ YV KYG +VAQIIT+G++ AK+A+R Sbjct: 665 YDLLFERFLNPERVSMPDIDIDFDDEGRSKVMDYVIEKYGQNQVAQIITYGTMAAKSAIR 724 Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL------- 512 D R L +P + DR+ KLIP+ + R + V L+ Sbjct: 725 DTARVLDLPLYEADRIAKLIPDMSKLGKIFSMNEKEIRKKFRSEEVDKVLELIAISEQDS 784 Query: 513 ------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 ++ LEG R+ HA G++I +++ VP+ S+L VTQF+ +E A Sbjct: 785 PEAETVNQARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSNLYVTQFDNSVVEDA 844 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625 GL+K DFLGLKTLTL++ +++ + R D P DD +TY L T+GIFQ ES Sbjct: 845 GLLKMDFLGLKTLTLIKDTVEIVKARHEVDLDPEAFPLDDEKTYELFQRGETVGIFQYES 904 Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685 GM++ ++ ++P D+IA+ +LYRPGP++ I + RK+G+E I P + L+ET Sbjct: 905 LGMQKHMKDLKPTVFGDLIAMNALYRPGPMEYIPSFIKRKHGEEDISYDLPEMQEYLEET 964 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK+K+ + K K +FI+ A NG ++ Sbjct: 965 YGITVYQEQVMLLSQKLASFTKGEADVLRKAMGKKLKDVLAKLKPKFINQAKDNGHNEEK 1024 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 I++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA ++ M +++K+ F Sbjct: 1025 LEKIWKDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLSNNMSDIKKVSFF 1084 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864 ++ ++ + ++ P VN F V D+ + + + AIKGVG I+E + S Sbjct: 1085 MEECKRMRLPVLGPDVNESYYKFSVNKDDAVRFGMGAIKGVGGGAVNTIVEHRKKGHYLS 1144 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQKYAQWVE 916 + D R+D + N++ ESL +AGA D G R Q Q+ L+ + KYA + Sbjct: 1145 IFDLSKRIDLRAANKKAFESLAYAGAFDSLGEVHRAQYFQATDGDLTFLEKVIKYAARYQ 1204 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +N+ + ++F + + +S + E+ V+G + SGHPLD +K + Sbjct: 1205 ENKNSSQVSLFGESSEVQIPEPEVPPCEPWHSMRTLKAEKEVVGLFLSGHPLDDFKLEIN 1264 Query: 977 KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +E + LA +V K ++ G + + +E F Sbjct: 1265 SFCRSNLKEVAEIENHLNKELSLAGVVTDVNHKVSKTGKGFATFVLEDYNESHEFWIF 1322 >gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 1161 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 494/1052 (46%), Positives = 667/1052 (63%), Gaps = 59/1052 (5%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +LEGAL L + PA+A+TD+NN+F+ALEFS AG+QPIIGCQ+D+ Sbjct: 1 MLEGALRLKKLPGMCRDAGMPALALTDSNNMFAALEFSVAMAGAGVQPIIGCQVDVAY-- 58 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 G+ P P P +VLL + GY+ L++L S +YL D+G + L L+ + Sbjct: 59 --VEVQPGEKPRPPAP-VVLLAQSELGYENLMKLNSCLYL-DKGGAVAEVTLDELEALSA 114 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRY 195 + +I LTGG GP+ AE + K FGDRLYV LQRH +R Sbjct: 115 D-IICLTGGPMGPVGMLLQGGQRPAAETLMARLKAAFGDRLYVELQRHPVDGGQPEPERL 173 Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYL 254 E V++AY ++PLVATN+ F + YEAHD L+ ++ Q+ R R+T HY Sbjct: 174 TERGFVEMAYAMDIPLVATNDVYFPKPDMYEAHDALICISEGAYVDQQQPRRRLTAQHYF 233 Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314 K+++EM ++F+DLPEAL NTVEIA+RC+F+ + +E ELR Sbjct: 234 KSQAEMATLFADLPEALSNTVEIAKRCAFMAY--------RRDPILPKFADDEVAELRRM 285 Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 A GL+ RLA I +DY++RLDFEL +I M F GYFLIVADFIQWAK NNIPV Sbjct: 286 ANEGLKARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDNNIPV 343 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYV Sbjct: 344 GPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV 403 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IA 493 Q KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP + PVS++ +A Sbjct: 404 QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA 463 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 D+ R RE + V RLL Q++EGL R+ASTHAAG+VIGDRPL QLVP+Y+D RSD+ Sbjct: 464 DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSDM 523 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------------------RGVK 595 P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + G Sbjct: 524 PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKAGGRHLHIAADGTEIYQPPEGHI 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 D++ IP DD TY L ++ T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP+ Sbjct: 584 DDIATIPLDDKATYKLYSSAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM 643 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI Y KNG+ ++ S+HP ID +L+ETQG+I+YQEQVMQIAQ+++GYSL AD+LRR Sbjct: 644 ENIPTYCEVKNGQRELESVHPSIDYILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKKI EEM K++ +F GA NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQ Sbjct: 704 AMGKKIAEEMAKERPKFEKGAMANGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K ++PVEF+A M ++ +K+ + ++ R + + +PP VN FKV D Sbjct: 764 TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDASFKVVDGA 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+L A+K VG R + E DKPF +L D RVD K++ +R LE LV +GA Sbjct: 824 LVYALGALKNVGLEAMRLVTEGRKVEGVDKPFATLYDLARRVDLKRVGKRPLEMLVRSGA 883 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D +R ++ QSLD + Y+ + + + + ++F E G + + S+ Sbjct: 884 FDQLDSNRRRVFQSLDGLVSYSAAIHEQKASNQVSLFG-EAGDDLPEPRMLPCDDWQSAE 942 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRK-------MGIKGYEESVATIRGN---NIRLAAM 1000 R E + +GFY SGHPLD Y LR+ + +E + N RLA + Sbjct: 943 RLAEEFKAVGFYLSGHPLDDYMVPLRRKWARETGLPFLTLDELTEKVSTRGAMNARLAGV 1002 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 V +Q++K+ +G+R + S+ YE F Sbjct: 1003 VAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1034 >gi|148654277|ref|YP_001274482.1| DNA polymerase III subunit alpha [Roseiflexus sp. RS-1] gi|148566387|gb|ABQ88532.1| DNA polymerase III, alpha subunit [Roseiflexus sp. RS-1] Length = 1279 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 347/1061 (32%), Positives = 548/1061 (51%), Gaps = 56/1061 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G + + I + +IA+TD ++ +EF A AGI+P Sbjct: 3 DFVHLHVHSEYSLLDGYAATSAIAARAVELGMDSIALTDHGVMYGVMEFYASAKKAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + + T++G ++LL GY+ L+ L +R +L GK Sbjct: 63 IIGLEAYMAPGSRRDATSRGAK---NYYHLLLLAKDEVGYRNLVRLTTRAHLDGMGKGVF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L++ +GLI+ + +G + + A + ++ L G D ++ Sbjct: 120 ARPRIDRELLEQYH-DGLIVTSACIAGEVIQRLTEKQKDQAREIAAWYRDLLGPDNYFLE 178 Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---V 240 LQ H ++V++ +PLV TN++ F+ ED EAH +++A+ ++ + Sbjct: 179 LQLHENTPELEEINDELVRIGKELGIPLVVTNDTHFVRPEDLEAHKMILALGYNMTLKEL 238 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K+ H + LENT IA RC+ L+ LP E Sbjct: 239 CAKNYQMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLTLEFGRVQLPTIDIPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G+ ++Y +RL +EL+VI + F Y LIV Sbjct: 299 HD----AASYLRLVCEEGLMRRF------NGHPPEEYVKRLAYELDVINQTGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MPD DI Sbjct: 349 WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR EV+ Y+ KYG E AQIIT+G+L AKAALRD+GR L++P ++VDR+ +LIP Sbjct: 408 DFADSRRHEVLEYIAAKYGRENTAQIITYGTLGAKAALRDIGRVLEIPLNEVDRVARLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P QA+ ++ +P + RL++ +QK+EG + THA G+V+ PL Sbjct: 468 ALPVGTTIAQALERVPELKQIYTTNPDLARLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527 Query: 541 QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 +VP+ R + + + F ++K GL+K D LGL L+++ ++L+++AQ K++L Sbjct: 528 DIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALEYIAQTTGRKMEL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD + + L+ T +FQLES GM + L ++P +ED+ A+V+LYRPGP++ I Sbjct: 588 ADIPLDDPKVFEALSRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY + KN + I +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ Sbjct: 648 PVYIHNKNNPQDIKYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK K+ M + + +F G + G+++ A +++L+ FA Y FN+ H+ Y ++SYQTAW Sbjct: 708 KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWDLILPFAGYSFNRPHSTLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832 +K +YPVE++AA + E I K + RQ + ++ P +N +DF + D Sbjct: 768 LKVNYPVEYMAAVLKGAGGVTEDIAKAVNECRQRGVPVLGPDINASALDFTIREFRDPSD 827 Query: 833 NRIY----YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 +I + LAAIK VG I+ A+ PF SL+D C RVD LN+RVLESL+ Sbjct: 828 GQIRRGILFGLAAIKNVGAGPIEAILRERDANGPFRSLDDLCERVDRHALNKRVLESLIK 887 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--- 944 AGALD +R Q L LD + +KNR ++F + I+ Sbjct: 888 AGALDPLPGTRRQKLAILDTALEAGARAQKNRETGQIDMFGNIVADTDASISAIPLPTIN 947 Query: 945 --VENSSVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIR--------GN 993 ++ + E+ +LG FS P + + L I A G Sbjct: 948 ETPDDRKEQLAWEKELLGVVFSSDP----RKVALADAAIDNRVPLAALRDPEGLQEYMGK 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA-KEYEANFFP 1033 A M+ + T+KG + + E FP Sbjct: 1004 VHTFAGMLTRVRAISTKKGDSMLVAALEDEHEDVVELVAFP 1044 >gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247] gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247] Length = 1180 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 330/1069 (30%), Positives = 533/1069 (49%), Gaps = 50/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL H+ YS+L+GA + + + AI +TD N+F A EF A Sbjct: 1 MTDS--FVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVK 58 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 I+PIIG + + + + + ++ A G + L + Sbjct: 59 NDIKPIIGIEAYVAPASRFETKRVTWGTRDQKDDDVSGSGAYTHMTMVAENATGLRNLFK 118 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ + E EG+I TG SG + + A + + Sbjct: 119 LSSLASIEGQLGKWARMDADIIAEY-AEGIIATTGCPSGEVQTRLRLGHEREALEAAAKW 177 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG + Y+ L H +R ++++ + + TN+ +++++ ++H+ L+ Sbjct: 178 QEIFGKENFYLELMEHGLEIERRVRDGLLEVGRKLGIKPLVTNDCHYVTKDHAKSHEALL 237 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290 V +S R + D Y + + D +P A +NT+EI R V Sbjct: 238 CVQTGKTLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADVFTH 297 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + + ++ LR + GL R G ++Y++R ++EL+VI + Sbjct: 298 RDRMPVFPVPEG--ESQQTWLRKEVAKGLAERRFAG----AEVPREYQERANYELDVIIQ 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+V D I+ A++ I VGPGRGS AGS+ A+AL IT+IDP+ LLFERFLNP Sbjct: 352 MGFPAYFLVVGDLIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R+SMPD DIDF RR E++RY +++G ++VAQ+ITFG+++ KAA++D R Q Sbjct: 412 ERVSMPDIDIDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 471 Query: 469 YSQVDR---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 +S DR + K IP + + + R DP V ++ + + LE Sbjct: 472 FSIADRITKALPPPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDTALGLE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+A HA +++ PL+ +P++R + +T ++ E GL+K DFLGL+ L Sbjct: 532 GLIRNAGVHACAVIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 591 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +++ + RG +DL P DD +TY LL TLG+FQL+ MR+ L+ MQP Sbjct: 592 TVIGDAIENIKINRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLKRMQPT 651 Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 EDI+A+++LYRPGP+ Y +RKNG++++ IHP + LK +T G+I+YQ Sbjct: 652 GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYGLIVYQ 711 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+MQIAQ ++GYSL AD+LRRAMGKK E + + E F +G NG S +++ Sbjct: 712 EQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIKALWDT 771 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ Sbjct: 772 ILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKL 831 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I ++PP VN +F I + LAAI+ VG+ I+ A + F S D+ + Sbjct: 832 GITVLPPDVNESQRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFSDYLGK 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D N++V ESL+ AGA D + R L + +K ++F Sbjct: 892 IDVTACNKKVTESLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDLFGDAG 951 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G + + ++ + E+ +LG Y SGHPL + + Sbjct: 952 GADDTMAEVFAVKVPD-EEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAHTDTSITTL 1010 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G I + ++ S ++ +KG VT + E FFP Sbjct: 1011 LEGNIADGAQITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFP 1059 >gi|15677663|ref|NP_274824.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58] gi|14194679|sp|Q9JXZ2|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58] gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76] gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385] gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76] Length = 1144 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 MELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|295839452|ref|ZP_06826385.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74] gi|197698735|gb|EDY45668.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74] Length = 1181 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 336/1069 (31%), Positives = 536/1069 (50%), Gaps = 49/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL VH+ YSLL+GA L ++ IA++D NL A +F +A Sbjct: 1 MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + + G L + Sbjct: 61 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + + A K + Sbjct: 121 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 180 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 240 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQVDTTGMFE 298 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + D E + + G+E R G D +++ ++E++VI +M Sbjct: 299 KRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPAGV------PDDRQRQAEYEMDVIIQM 352 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 353 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 413 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D + + ++ R +P V ++++ ++ +EGL Sbjct: 473 GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ ++ +TQ++ E GL+K DFLGL+ LT++ Sbjct: 533 RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G ++DL IP DD +TY LL TLG+FQ + MR L M+PD E Sbjct: 593 DDAVKMVKSNKGRELDLLAIPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 653 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S ++++L Sbjct: 713 QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 773 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP VN +F GD+ I + L A++ VG I+ + + S D+ +V+ Sbjct: 833 VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVESIIRSRKAKGKYASFPDYLDKVE 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 893 AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F +T S E+ +LG Y S HPL + +L G + Sbjct: 953 DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC 9343] gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC 9343] Length = 1264 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62 Query: 61 -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84 A AG +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T + Sbjct: 238 VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ G + Sbjct: 358 KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS Sbjct: 418 L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA I Sbjct: 472 AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503 IT+G++ K A++DV R ++P ++ DRL KL+P+ AI + A Sbjct: 532 ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618 IE GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+ Sbjct: 652 GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P++ Sbjct: 712 GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G K Sbjct: 772 EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N Sbjct: 832 NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 + I K + + +Q + P VN + F V + I + L A+KGVG + IME Sbjct: 892 ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 951 Query: 858 A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 952 KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1011 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + ++ ++F + + N R E+ ++G Y S HPL Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071 Query: 969 DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L + E + + G I + +V S ++ ++ G+ G + + Sbjct: 1072 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131 Query: 1027 YEANFF 1032 E FF Sbjct: 1132 AEIPFF 1137 >gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5] gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16] gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5] gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16] Length = 1273 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 12 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 71 Query: 61 -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84 A AG +PIIGC++ + Sbjct: 72 KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 128 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 129 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 186 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 187 IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 246 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T + Sbjct: 247 VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 306 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 307 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 366 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ G + Sbjct: 367 KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 426 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS Sbjct: 427 L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 480 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA I Sbjct: 481 AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 540 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503 IT+G++ K A++DV R ++P ++ DRL KL+P+ AI + A Sbjct: 541 ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 600 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 601 PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 660 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618 IE GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+ Sbjct: 661 GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 720 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P++ Sbjct: 721 GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 780 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G K Sbjct: 781 EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 840 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N Sbjct: 841 NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 900 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 + I K + + +Q + P VN + F V + I + L A+KGVG + IME Sbjct: 901 ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 960 Query: 858 A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 961 KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1020 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + ++ ++F + + N R E+ ++G Y S HPL Sbjct: 1021 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1080 Query: 969 DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L + E + + G I + +V S ++ ++ G+ G + + Sbjct: 1081 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1140 Query: 1027 YEANFF 1032 E FF Sbjct: 1141 AEIPFF 1146 >gi|318057575|ref|ZP_07976298.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG] gi|318078654|ref|ZP_07985986.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF] Length = 1181 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 335/1069 (31%), Positives = 536/1069 (50%), Gaps = 49/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL VH+ YSLL+GA L ++ IA++D NL A +F +A Sbjct: 1 MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + + G L + Sbjct: 61 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + + A K + Sbjct: 121 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 180 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 240 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + + E + + G+E R G D +++ ++E++VI +M Sbjct: 299 KRDLMPKFEIPDGFTEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVIIQM 352 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 353 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 413 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D + + ++ R +P V ++++ ++ +EGL Sbjct: 473 GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ ++ +TQ++ E GL+K DFLGL+ LT++ Sbjct: 533 RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G ++DL IP DD +TY LL TLG+FQ + MR L M+PD E Sbjct: 593 DDAVKMVKSNKGRELDLLAIPLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 653 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S ++++L Sbjct: 713 QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 773 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP VN +F GD+ I + L A++ VG I+ + + S D+ +V+ Sbjct: 833 VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLDKVE 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 893 AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F +T S E+ +LG Y S HPL + +L G + Sbjct: 953 DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1] Length = 1182 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 321/1063 (30%), Positives = 516/1063 (48%), Gaps = 45/1063 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + ++ A G + L +L S Sbjct: 64 IIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + + A + ++++FG Sbjct: 124 SFEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ L H +R ++ + +P +ATN+ +++ + + H+ L+ + Sbjct: 183 PENFFLELMDHGLDIERRVREGLLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLCIQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +S +R + D Y + + D + + Sbjct: 243 KTLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPKDRMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ + L ++ + GL+ R GA Q+Y R +E+ VI F YF Sbjct: 303 IFPVPEGHDQGSWLTHEVMTGLQERRFHGAP----VPQEYIDRAQYEIKVICDKGFPAYF 358 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVAD I +A+ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R S PD Sbjct: 359 LIVADLINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPD 418 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475 DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q ++ DR+ Sbjct: 419 IDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRI 478 Query: 476 CKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K P A + + + + + R DP V + E ++ LEGL R+A Sbjct: 479 TKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAG 538 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ + Sbjct: 539 VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCI 598 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + RG+ VDL + DD + Y LL TLG+FQL+ MR L MQP DI+A Sbjct: 599 ENIKANRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVA 658 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 +++LYRPGP+ Y +RKNG++ I IHP ++ LK+ T G+I+YQEQ+M IA Sbjct: 659 VLALYRPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVYQEQIMFIA 718 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + FA Y Sbjct: 719 QKVASYSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWDTILPFAGY 778 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I ++PP Sbjct: 779 AFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPP 838 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 VN +F + I + L A++ VG ++ + F D+ +++D N Sbjct: 839 DVNESVQNFASVGDDIRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYLNKIDIAACN 898 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 ++V ESLV AGA D G+ R L + +K ++F G+ +D Sbjct: 899 KKVTESLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGADGSGADAG 958 Query: 938 -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990 I + + E+ +LG Y SGHPL+ +L + Sbjct: 959 DSAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVA 1017 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + E FFP Sbjct: 1018 NDTQVRVGGILASVNRRVNKNGLPWASAQIEDLTGGIEVLFFP 1060 >gi|302518507|ref|ZP_07270849.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78] gi|302427402|gb|EFK99217.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78] Length = 1181 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 334/1069 (31%), Positives = 535/1069 (50%), Gaps = 49/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F HL VH+ YSLL+GA L ++ IA++D NL A +F +A Sbjct: 1 MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + + G L + Sbjct: 61 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EGLI TG SG + + A K + Sbjct: 121 LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 180 QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y + D +A + + + Sbjct: 240 CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 R + + + E + + G+E R G D +++ ++E++VI +M Sbjct: 299 KRDLMPKFEIPDGFTEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVIIQM 352 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 353 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 413 RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K +P D + + ++ R +P V ++++ ++ +EGL Sbjct: 473 GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ ++ +TQ++ E GL+K DFLGL+ LT++ Sbjct: 533 RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G ++DL I DD +TY LL TLG+FQ + MR L M+PD E Sbjct: 593 DDAVKMVKSNKGRELDLLAIQLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 653 DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E++K F +GA KNG S ++++L Sbjct: 713 QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 773 FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP VN +F GD+ I + L A++ VG I+ + + S D+ +V+ Sbjct: 833 VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLDKVE 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 893 AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952 Query: 928 -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 ++ F +T S E+ +LG Y S HPL + +L G + Sbjct: 953 DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060 >gi|109946747|ref|YP_663975.1| DNA polymerase III subunit alpha [Helicobacter acinonychis str. Sheeba] gi|109713968|emb|CAJ98976.1| DNA polymerase III, alpha chain [Helicobacter acinonychis str. Sheeba] Length = 1209 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 371/1076 (34%), Positives = 589/1076 (54%), Gaps = 58/1076 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSMTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMYLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTF 174 RI L+E ++G+I + G ++ N A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNSERNRRYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ + R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDQGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + + YR+RL+ Sbjct: 294 NPPTPPSFKFTKTYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHEQYRERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKERGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ + ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHQIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A+N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMAGNKAKFVEGAKNLGHDGQKAINL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 R I++MPP +N+ DF V + +I + L AIKGVG+ ++I+E + Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNEKVEKKIVFGLGAIKGVGSEPIKNIIEERTKGDY 890 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 +LEDF SR+D KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 KNLEDFISRMDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDVGRAKDKANEMM 950 Query: 923 H--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++F + +++ L+ ++ + E E LG + SG+PLD +K ++ Sbjct: 951 QGGNSLFGAMESETREQVILDMADLGEHDAKMLLEYEYETLGIHVSGNPLDEFKEEIKGF 1010 Query: 979 -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E FF Sbjct: 1011 KNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTAEILDRYGKFELMFF 1066 >gi|188528231|ref|YP_001910918.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470] gi|188144471|gb|ACD48888.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470] Length = 1211 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 374/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC 25259] Length = 1141 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 398/1039 (38%), Positives = 588/1039 (56%), Gaps = 35/1039 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++H+ YS+++G + ++ + + PA+ ++D +N F ++F + A Sbjct: 1 MTD-PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI GC + + + ++LLV EGY+RL EL++R Y + Sbjct: 60 AGVKPIFGCDVWVSNATDRNRP----------SRLLLLVQHREGYRRLCELLTRAYQENL 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I SWL E GL+ L+GG G + +A + VA + LF R Y+ Sbjct: 110 HRGRAEIDPSWLAE-NNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYL 168 Query: 185 NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R ++ + LP VAT+ FL+ +D++AH+ + +A ++ Sbjct: 169 ELQRFGQAHTERLIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T + Y K EM ++F+DLPEAL N+VEIA+RC+ L++ LP F + Sbjct: 229 RRPRPFTAEQYFKTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMG 288 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ +R +A GL R+A + +Y +RL+FEL I +M F GYFLI Sbjct: 289 L----DDYMRQRAYEGLAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLI 344 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFI WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD Sbjct: 345 VADFINWAKNNGVPVGPGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFD 404 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD RD VI+YV++KYGH V+QI TFG++ AKA LRDVGR L +PY VD+ KL+ Sbjct: 405 IDFCQDGRDRVIQYVKDKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLV 464 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 PN+ ++ + + E + + LL +++KLEG+ R+ HA G++I L Sbjct: 465 PNELGISLAEAR-EKEPQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVLIAPGKL 523 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVD 597 + P+Y+ SD V+QF+ +E GL+KFDFLGL+TLT+L +++ F+ + Sbjct: 524 TDFCPLYQAEGSDAAVSQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHEDRKDFR 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD Y L T +FQ ES + + ++ DC EDIIAL++L RPGP+ + Sbjct: 584 LEDLPLDDPAVYRLFADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNRPGPLGS 643 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + + RK GK+K HP ++P+LK T G+I+YQEQVM +AQ+L+GYSL AD+LRR Sbjct: 644 GMVDDFIARKQGKQKPEYFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGGADMLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ+ F+ GA K G+ IA +F+L+ KFA+YGFNKSH+AAYA+++Y Sbjct: 704 AMGKKKPEEMAKQRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAYALVAYH 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834 TAW+K +YP EF+AA+M+ EM + +K++ F +D R + ++PP +N F V Sbjct: 764 TAWLKAYYPAEFMAATMSSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFDPVSRTE 823 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKG G I+ A+ P+ L D RVD + LNRRVLE+LV AGA D Sbjct: 824 IRYGLGAIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVKAGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R L+ S+ + A R+ +F + L + Sbjct: 884 LSDHRASLMASIGVALETADRA--ARSGGQVGLFGEVLEGGGED--LVDVPYWPEQEKLL 939 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG++FSGHP Y + + + + LA + VS + + TR+G Sbjct: 940 QEKSALGYFFSGHPFTAYLAEVSGFAKRRLDSLEPARE--PVMLAGVAVSLRTQMTRRGK 997 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + + + + E F Sbjct: 998 -MLILLLDDATAQVEVVIF 1015 >gi|116670142|ref|YP_831075.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24] gi|116610251|gb|ABK02975.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24] Length = 1185 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 374/1073 (34%), Positives = 548/1073 (51%), Gaps = 56/1073 (5%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA Sbjct: 1 MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKAT 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 GI+PIIG + + + + + LL G + L Sbjct: 61 DKGIKPIIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGGSYTHMTLLSYNNVGMRNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 S L + R+ L +EGLI TG SG + + A + Sbjct: 121 FRASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREALEAAA 179 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG + + L H +R +++LA LPLVATN+ + E D +AH+ Sbjct: 180 EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEA 239 Query: 231 LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 L+A+ + + + +YLK+ EM +F D PEA +NT+ IA RC Sbjct: 240 LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEV 299 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 A +PRF E +D E + L + GL R QG R++ D+ Sbjct: 300 SFNTGANYMPRFPCPEGED----ETSWLVKEVDKGLHYRYPQG------IPDKVRKQADY 349 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL L+ Sbjct: 350 ELEVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLHHGLI 409 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 410 FERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469 Query: 464 ALQMPYSQVDRLCKL-IPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEI 514 L P+S + L K P A + L I + FR+ DP ++ E Sbjct: 470 VLGYPFSMGETLTKALPPAVMAKDIPLADIQNKEAKRYSEAGDFRQLISTDPEAAKVFET 529 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFL Sbjct: 530 ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 589 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L+ Sbjct: 590 GLRNLTIISDALENIKMNRGIDLDLETLELDDTASYELLARGDTLGVFQLDGGPMRSLLK 649 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A+++LYRPGP+ + Y RKN ++++ IHP ++ L E T G Sbjct: 650 LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM +AQ L+GY+L +AD+LRRAMGKK K E+DKQ F G NG S Sbjct: 710 LIVYQEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVK 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + Sbjct: 770 TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 + R+ I ++PP VN ++F N I + + AI+ VG ++ A + + S + Sbjct: 830 ECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSFK 889 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ +V + N+R +ESL+ AGA D + R L + +++N ++ Sbjct: 890 DYLMKVPAVVCNKRTIESLIKAGAFDSLNHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949 Query: 927 FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 FA S+ I + + E+ +LG Y S HPL + +L + + Sbjct: 950 FAGFDEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHADQSI 1009 Query: 984 EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A G I +A M+ S ++ G+ + E FF Sbjct: 1010 TSIIAEDGPHDGAIITIAGMITSLSRRIAKASGNAYARAEIEDLGGSIEVMFF 1062 >gi|319794191|ref|YP_004155831.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS] gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS] Length = 1172 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 404/1050 (38%), Positives = 598/1050 (56%), Gaps = 45/1050 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ ++ AAD+QPA+AITD NNLF A++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--S 128 IG ++ I+ + +VLLV EGY L EL++R + + G+ Sbjct: 62 IGAEIFIE---------GLGKEPGVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQ 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 L WL+E+ + GLI L+G +GP+ + A + L +F R Y+ LQR Sbjct: 113 AACKLEWLEEL-SGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQR 171 Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D V+LA +LP+VAT+ F +DYEAH+ + ++ ++ R R Sbjct: 172 AGRPEDEPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T + Y K+ +EM ++F+D+P AL NTVEIA+RC+ L + P LP F + + Sbjct: 232 KFTEEQYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRM 291 Query: 307 E-ENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ R ++ GLE L A + Y +RL+FE+N I M F GYFLIV D Sbjct: 292 PIDDFFRQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGD 351 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF Sbjct: 352 FIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV++KYG V+QI TFG++ A+AA+RDVGR L M Y D + KLIPN Sbjct: 412 CQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471 Query: 483 PAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 P V+ AI + + + + V L+E++QKLEG+ R+ H Sbjct: 472 PGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMH 531 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT---LTLLQKS 585 A G++I L+ P+Y+ SD V+Q++ +E GL+KFDFLGL T L + + Sbjct: 532 AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDF 591 Query: 586 LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + IP D TY L + T +FQ ES GM+ L+ +P +ED+IA Sbjct: 592 IVARHKGQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 L +LYRPGP+D I + RK+G+E++ HP + ML ET G+++YQEQVMQ AQ+L GY Sbjct: 652 LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764 SL AD+LRRAMGKK EEM + +E+F +GA + +GI + A IF+L+ KFA YGFNKS Sbjct: 712 SLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKS 771 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNT 823 HAAAY++++Y T W+K HY EF A+MT+EMD+ +K+K +DA++ I PP VN Sbjct: 772 HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNR 831 Query: 824 PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881 F+ V D I Y L A+KG G ++ A + PF SL DFC R+D +++N+R Sbjct: 832 GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITL 940 +E+L+ AGA D +R L+ S+D ++A +IF + G+ + + L Sbjct: 892 VEALIKAGAFDAIQQNRAALIASVDRAFEFASATA--ANAAQVDIFGDAEHGSATAEPDL 949 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + R E+ +GFY SGH D +R+ + + + + +A + Sbjct: 950 VDATPWGVKERLTLEKTAIGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIAGI 1007 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 V + ++G R+ + ++ +A Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSESIDAT 1036 >gi|160891291|ref|ZP_02072294.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492] gi|317481161|ref|ZP_07940236.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156859512|gb|EDO52943.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492] gi|316902657|gb|EFV24536.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 1265 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 360/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84 + A I +PI+GC++ + Sbjct: 63 KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++LA +++ ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM ++F D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 358 KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 418 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 472 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL+++++++ + RG+++D+ I D TY L T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FISG Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 832 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ I K + + I + P VN + F V + I + L A+KGVG + IME Sbjct: 892 NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + PF + DF RV+ N++ LE L AG D F R Q L+ Sbjct: 952 REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E + G I + +V + ++ ++ G+ G + + Sbjct: 1072 LDEYSVVLEHVCNTHMTELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAELPFF 1138 >gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38] Length = 1512 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 350/1092 (32%), Positives = 556/1092 (50%), Gaps = 81/1092 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 K ++ HL H+ +S+L+ +++N+++ A + PA+A+TDT N+ A F Sbjct: 257 KDAAYAHLHNHTQFSVLQSTIAINDLVKASAKFKMPAVAMTDTGNMMGAFHFVSAVMNHN 316 Query: 67 ---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 I+PI+GC+ +I K +VLL Sbjct: 317 KAAKAKIEAAIEAGEEPTEIEIKPIVGCEFNICDDHKDKTKKDNGN------QVVLLAKN 370 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 +GY L ++ S Y D RI + + E +++L+G G I Sbjct: 371 KKGYHNLAKMSSIAYT-DGFYYVPRIDRKIVAQY-KEDIMVLSGNLYGEIPSKILNVGES 428 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ L+ +K+ FG Y+ L RH+ D R ++ A H + L+ATNN+ ++++ED Sbjct: 429 QAEEALIWWKEQFGSDFYLELMRHKQEDENRVNQTLIAFAKKHNVKLIATNNTYYVNKED 488 Query: 225 YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V + ++Y K+ EM +F+DLPEA+ N EI Sbjct: 489 ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKQLFADLPEAIINIQEI 548 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329 + +LP+F + ++ ++ E+ LR+ G E R + Sbjct: 549 IDKVEAYSLYRDVLLPKFKIPDEFEVPEDAEDGGVRGENNYLRHLTYLGAEKRYPE---- 604 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 D ++RLDFEL I+ + GYFLIV DFI A+K ++ VGPGRGS AGS AY Sbjct: 605 ---LTDDIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV NKYG +VAQIIT+ Sbjct: 662 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITY 721 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADPS 507 G + K+A+RD R L +P + DR+ KLIP +L D+S ++A ++ Sbjct: 722 GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFLAEDESEVKKALRSEEF 781 Query: 508 VD---------------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 ++ ++ LEG R+ HA G++I ++ VP+ SD Sbjct: 782 DKVKELIEIANSEDLAGETIQQAKVLEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSD 841 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611 L VTQF+ E AGL+K DFLGLKTLTL++ ++ + R D P DD +TY L Sbjct: 842 LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIDLDPDNFPIDDEKTYEL 901 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 T+G+FQ ES GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E+I Sbjct: 902 FQRGETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEI 961 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 + L ET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK E ++K K + Sbjct: 962 KYDLEACEEYLGETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIEVLNKMKPQ 1021 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 FI+ A++ G + I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA Sbjct: 1022 FINQAAEKGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850 ++ M++++++ F ++ ++ +Q++ P VN F V +N + + + A+KGVG Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNENYAVRFGMGAVKGVGANAV 1141 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904 I++ + P+ S+ D ++D + N++ ESL AG D F R Q Sbjct: 1142 DTIVQNRKEAPYKSIFDVAKKIDLRAANKKAFESLALAGGFDGFTDTHRAQYFHHDGDGI 1201 Query: 905 --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 L+ +Y ++N + ++F + + ++ + E+ V+G Y Sbjct: 1202 TFLEKAIRYGSKFQENENSSQVSLFGDASEVQIAEPIVPPCDDWSTMEKLAKEKEVVGIY 1261 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 SGHPLD YK ++ E + + G N+ +V + Q + + G+ G Sbjct: 1262 ISGHPLDDYKYEMKYFCNAKLESLKSLEQHVGKNLSFGGIVTNVQHRTAKNGNGWGSFVL 1321 Query: 1021 SEPAKEYEANFF 1032 + YE F Sbjct: 1322 EGYEESYEFRIF 1333 >gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305] gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305] Length = 1142 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 402/1031 (38%), Positives = 586/1031 (56%), Gaps = 38/1031 (3%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 ++ G + +++ AD A+A+TD N ++F ++ ++G++PIIG + + + Sbjct: 1 MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILVRPEP 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + V + LL +GY + L+S Y + +WL E Sbjct: 61 ESE----------EVYELTLLAKNNQGYHNITLLLSMAYQQGYV-DLPLVEKAWLAEY-N 108 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200 EG+I+L+GG SG + +A + + AE +++ F + Y ++ R D R S V Sbjct: 109 EGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERYISAV 168 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSE 259 V A +P+VA N+ +FL E+D+EAH++ +A+ S + R + +P Y ++ E Sbjct: 169 VPFANQKGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFRSEEE 228 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F+DLP ALENT+EIA+RCS +++ E L K+ GL Sbjct: 229 MCRLFADLPSALENTIEIAKRCSVTVRLGEYF-----LPNFPTGDLTTEAFLIKKSEEGL 283 Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 E RLA + + Y +RL EL+VI +M F GYFLIV +FIQW+K N IPVGP Sbjct: 284 EERLAFLFPDPEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 343 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V Sbjct: 344 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAE 403 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496 YG + V+QIITFG++ AKA +RDVGR L PYS VDR+ KLIP DP + +A A + Sbjct: 404 TYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 + E +D V L+++++KLEG+ R+A HA G+VI ++ P+Y D PVT Sbjct: 463 KLTELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSEGLHPVT 522 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611 F+ +E AGL+KFDFLGL+TLT+++ +L+ + R V + IP +D +++ L Sbjct: 523 HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVRIESIPLNDKKSFDL 582 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670 L T +FQLES GM+ + ++PDC EDIIALV+L+RPGP+++ +V N K Sbjct: 583 LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642 Query: 671 ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 H + P+L+ T GVI+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EE Sbjct: 643 EVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M Q+E F GA I +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP Sbjct: 703 MAAQREIFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 EF+AA M+ EMDN +KI + + ++PP +N+ F V + I Y L AIK Sbjct: 763 AEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSVNEKGEIVYGLGAIK 822 Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG I+EA + F L D +RVD KK+NRR ++L+ +G+LD G R L+ Sbjct: 823 GVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKLGPHRAALM 882 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961 ++L++ K + K ++F T + + + V + E+ LG Sbjct: 883 KNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQVVLDGERATLGL 942 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y SGHP+ + L E T RG + +A +V+S + T++GSRIG T Sbjct: 943 YLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVTKRGSRIGIATIE 1002 Query: 1022 EPAKEYEANFF 1032 + + + + F Sbjct: 1003 DRSGKLDITLF 1013 >gi|297199041|ref|ZP_06916438.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083] gi|197716004|gb|EDY60038.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083] Length = 1179 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 336/1067 (31%), Positives = 537/1067 (50%), Gaps = 47/1067 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F HL VH+ YSLL+GA L ++ + IA++D NL A +F A Sbjct: 1 MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG+ PIIG + + + + + + G L + Sbjct: 60 AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Y ++ R+ + + +EG++ TG SG + A K + Sbjct: 120 LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGELQTRLRLGQYDEALKAAADY 178 Query: 175 KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG DR ++ L H +R ++++ +P + TN+S + + AHD L+ Sbjct: 179 QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 + +S DR R Y S D +A + + ++ Sbjct: 239 CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAVDSSDAWQEGCANTLLVAEMVDTTGMFE 297 Query: 293 PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + + D E + + G+E R G +D +++ D+E++VI +M Sbjct: 298 AKNLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+ Sbjct: 352 GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471 Query: 472 VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DRL K +P D + S ++ R +P V ++++ ++ +EGL Sbjct: 472 GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEGLV 531 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 532 RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +G+ +++ +P DD +T+ LL TLG+FQ + MR L MQPD E Sbjct: 592 DDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+ +LYRPGP+ + Y RKNG+++I IH ++ L+E T G+I+YQEQV Sbjct: 652 DISAVSALYRPGPMGMNSHINYAERKNGRQEITPIHKELEEPLEEVLAVTYGLIVYQEQV 711 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 + AQ+++GYSL EAD+LRR MGKK +E+ K F +GA KNG S ++++L Sbjct: 712 QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVLVP 771 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T D+ +K + + R+ I+ Sbjct: 772 FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIK 831 Query: 816 IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873 ++PP+VN +F GD+ I + L A++ VGT I+ + + S D+ +V+ Sbjct: 832 VLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDKVE 891 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + N+R ESL+ AGA D G++R L D++ V++ ++F Sbjct: 892 AVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEA 951 Query: 934 FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S + + + E+ +LG Y S HPL + +L G + Sbjct: 952 DSSEPGFGLDVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058 >gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013] Length = 1144 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 396/1038 (38%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M FSDLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|315585849|gb|ADU40230.1| DNA-directed DNA polymerase III alpha subunit [Helicobacter pylori 35A] Length = 1211 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKSYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDTQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + + + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM 18228] gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM 18228] Length = 1265 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 361/1147 (31%), Positives = 578/1147 (50%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PIIGC++ + + Sbjct: 63 NGEIKDLKKKIAALESGKAESENPEAELAACKEQLEAARKKLFKPIIGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 + ++ + +V+L +GY LI+LVS+ + R + L++ EGL Sbjct: 120 LEDKDGKQDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ + G + R + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACLGGEVPRRISAGQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHETFKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 ++++ A +++ LV TN+ F+ EE+ EAHD L+ ++ + +R T + Sbjct: 238 EVVNQKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R EM IF+D+PEAL NTV+I + F HAPI+P F+ E ++E Sbjct: 298 MKTREEMNEIFADVPEALSNTVDICDQVEFYSIDHAPIMPTFVIPESFGTEEEYRKKFTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G R + Sbjct: 358 KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGE- 416 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 ++ ++R+ FEL+++ M F GYFLIV DFI A++ ++ VGPGRGS AGS Sbjct: 417 -----ELDEEVQERIKFELHIMKTMGFPGYFLIVQDFISAAREKLDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKLIP+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 +DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SSDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++L+ + +G+ +++ IP DD TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKNSKGIVLNIDEIPIDDPATYRLYSDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855 N+ +I K +++ I+++ P VN + F V I + L AIKGVG + + I+ E Sbjct: 892 NITEITKLMDESKATGIRVLGPDVNESLLKFSVNRRGDIRFGLGAIKGVGESAVQSILSE 951 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDN 907 + P+ S+ DF RV+ NR+ +E+L AG D FG R ++ Sbjct: 952 REKNGPYKSIFDFVQRVNLSACNRKNIENLALAGGFDSFGNIKREDFFMKNSKDETFVET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGSKYQMDKAAAINSLFGGEHEVEVATPEIISAPAWSDLERLNKERELVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + EE ++ ++ L +V ++ T+ G G + + Sbjct: 1072 LDEYAVVLENVCNVHMEELSNLTPLQNRDLILGGIVTGVREGYTKSGKPYGIAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 VAEFAFF 1138 >gi|325996713|gb|ADZ52118.1| DNA polymerase III alpha subunit [Helicobacter pylori 2018] gi|325998307|gb|ADZ50515.1| DNA polymerase III alpha subunit [Helicobacter pylori 2017] Length = 1211 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 374/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ LI L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLIFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINYSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|208435328|ref|YP_002266994.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27] gi|208433257|gb|ACI28128.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27] Length = 1211 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 370/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + ++ ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A++ + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ + ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++ +LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLAHLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|307638113|gb|ADN80563.1| DNA polymerase III alpha subunit [Helicobacter pylori 908] Length = 1211 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 374/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ LI L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLIFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|220912350|ref|YP_002487659.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6] gi|219859228|gb|ACL39570.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 1185 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 374/1073 (34%), Positives = 552/1073 (51%), Gaps = 56/1073 (5%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F QKA Sbjct: 1 MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWQKAQ 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 A GI+PIIG + + + + + LL G + L Sbjct: 61 AKGIKPIIGVEAYVTPGTARGDKTRVRWGEENQRKDDISGGGSYTHMTLLSYNNVGMRNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 S L + R+ L +EGLI TG SG + + A + Sbjct: 121 FRASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREAVEAAA 179 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG + + L H +R +++LA LPLVATN+ + E D +AH+ Sbjct: 180 EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEA 239 Query: 231 LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 L+A+ + + + +YLK+ EM +F D PEA +NT+ IA RC Sbjct: 240 LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEV 299 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 +A +PRF +D E + L + GL+ R +G + R++ D+ Sbjct: 300 SFNTNANFMPRFPCPPGED----ETSWLVKEVDKGLQYRYPKG------IPDEVRKQADY 349 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+ Sbjct: 350 ELGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLI 409 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 410 FERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEI 514 L P+S ++L K +P A + FR+ DP ++ E Sbjct: 470 VLGYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLVSTDPEAAKVFET 529 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFL Sbjct: 530 ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 589 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L+ Sbjct: 590 GLRNLTIISDALENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLK 649 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A+++LYRPGP+ + Y RKNG ++++ IHP ++ LKE T G Sbjct: 650 LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S Sbjct: 710 LIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVK 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + Sbjct: 770 TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866 + R+ I ++PP VN ++F I + + AI+ VG ++ A + F S + Sbjct: 830 ECRRMGITVLPPDVNESALNFTPVGTDIRFGMGAIRNVGVNAVEAMVAARESEGAFTSFK 889 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ +V + N+R +ESL+ +GA D G+ R L + +++N ++ Sbjct: 890 DYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949 Query: 927 FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 FA + S+ I + + E+ +LG Y S HPL + +L + Sbjct: 950 FAGFEEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEMSI 1009 Query: 984 EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + +A M+ S ++ G+ + E FF Sbjct: 1010 TTILGEDGPQDGAILTIAGMITSLSRRIAKASGNAYARAEVEDLGGSIEVMFF 1062 >gi|308183558|ref|YP_003927685.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4] gi|308065743|gb|ADO07635.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4] Length = 1211 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|311899295|dbj|BAJ31703.1| putative DNA polymerase III subunit alpha [Kitasatospora setae KM-6054] Length = 1183 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 345/1068 (32%), Positives = 544/1068 (50%), Gaps = 52/1068 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SF HL VH+ YS+L+GA + + PAIA++D N+F A EF A + + Sbjct: 2 ADSFAHLHVHTEYSMLDGAAKNGKLFAEAERLGMPAIAMSDHGNMFGAYEFFHAAAKSAV 61 Query: 68 QPIIGCQLDIDMQDNLKMT------------------NQGKTPFPTVPSIVLLVSTAEGY 109 +PIIG + + + + + + A G Sbjct: 62 KPIIGIEAYVAPSSRFLKKQVFWAPGGQRPTGSDGEGGKDVSGGGRYTHMTMWAQNATGL 121 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 + L +L S + + R+ + G+I TG SG + + A K Sbjct: 122 RNLFKLSSLASM-EGYYMKPRMDRELIAA-NATGIIATTGCPSGEVQTRLRLGQYEEAVK 179 Query: 170 RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 ++ +FG + ++ L H +R + +++LA +PL+ATN+S +++ + +A Sbjct: 180 AAGAYQDIFGKENYFLELMDHGLSIERDVRADLLRLAKELGIPLLATNDSHYVTADQADA 239 Query: 228 HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 HD L+ V +R + +Y+K EM +F DLPEA +NT+ IA R + Sbjct: 240 HDSLLCVGVGKNKDDPNRFKFNGSGYYVKTSEEMRELFRDLPEACDNTLAIAERIESYEE 299 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 V + + + + + LR K AGL+ R +Q+ R++ E+ Sbjct: 300 VFTYVDRMPQFDVPEG--ETQASFLRKKIAAGLQHRYGDN------PSQEVLDRVELEMG 351 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI M F YFL+VAD Q+ + N IPVGPGRGS AGS+ +Y IT +DPL LLFER Sbjct: 352 VITPMGFDAYFLVVADICQYGRDNGIPVGPGRGSAAGSMVSYLTGITQLDPLEHDLLFER 411 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R++ PD DIDF +RD+++RYV +KYG AQ+ TFG+++AKAA++D R L Sbjct: 412 FLNPERINPPDVDIDFDDRQRDQMVRYVTDKYGSAYTAQVNTFGTIKAKAAVKDANRILG 471 Query: 467 MPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517 P+S DR+ K +P D V + + R +P V ++++ Sbjct: 472 YPFSMGDRITKAMPPDVMGKGVPLADLFNEKHPRYNEGTEIRSLYENEPDVKKIIDTGLG 531 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 +EGL R HAA +++ PL +L+P++ + +T F+ E GLIK DFLGL+ Sbjct: 532 IEGLIRGTGVHAAAVILSSTPLLELIPLHMRDKDGTIITGFDYPSCEAMGLIKMDFLGLR 591 Query: 578 TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 L ++ + + RGV VD+ IP DD TY LL TLG+FQL+ MR L M+ Sbjct: 592 NLGIIDHCIKIVKANRGVDVDIDNIPIDDPTTYQLLARGDTLGVFQLDGGPMRALLRLMK 651 Query: 637 PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690 P DI A+ +LYRPGP+ Y RKNG+++I+ IHP ++ LK T G+I+ Sbjct: 652 PTEFADISAVSALYRPGPMGMNSHTNYALRKNGQQEIIPIHPELEEPLKEVLGPTYGLIV 711 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++K+ F +G + G S ++ Sbjct: 712 YQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEVLEKEFVPFHAGCKERGYSDEAIQAVW 771 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 ++L FA Y FNKSH+AAY ++SYQTA++K +YP E++AA +T D+ +K+ + + R Sbjct: 772 DVLVPFAGYAFNKSHSAAYGLVSYQTAYLKANYPAEYMAALLTSVADDKDKMAIYLAECR 831 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 I+I+ P VN VDF + + + L A++ VG ++ A + S DF Sbjct: 832 AMGIRILSPDVNESVVDFTAVGSDVRFGLKAVRNVGVPVIESLVATREAKGKYTSFADFL 891 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 +V+ N+R ++SLV AGA D G++R+ L ++ V+K + +++FA Sbjct: 892 DKVELVVCNKRTVDSLVKAGAFDSLGHTRLSLSTVHESAIDAVTGVKKQQAIGQDDLFAM 951 Query: 930 EKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G + I L+ E+ +LG Y S HPLD + IL K + Sbjct: 952 LGGDDTPAIGLDFQLTDREWPRKQLLGLEREMLGLYVSSHPLDGAEHILTKNRDVSLVDL 1011 Query: 987 VAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + +RL+ ++ ++ + G+ +T ++ E FFP Sbjct: 1012 LNSGRTEGEVRLSGLITGVDRRINKAGNAWAIITLADRDGSIEVLFFP 1059 >gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM 20162] Length = 1183 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 325/1071 (30%), Positives = 527/1071 (49%), Gaps = 51/1071 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL H+ YS+L+GA ++ + + A+ ++D N+F A +F A Sbjct: 1 MPAQDSFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 I+PIIG + I + + + ++ A G + L + Sbjct: 61 YDIKPIIGIEAYIAPESRFNTKRVRWGDPSQKSDDVSGSGAYTHMTMVAENATGLRNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S + Q + R+ + E EG+I TG SG + Q A + + Sbjct: 121 LSSLASIEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG + Y+ L H +R ++++ + +ATN+ +++++ E+H L+ Sbjct: 180 QEIFGKENFYLELMDHGIDIERRVREGLLEIGRKLGIKPLATNDCHYVTKDKAESHGALL 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290 + +S R + D Y ++ + D A ++TVEI R +V Sbjct: 240 CIQTGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEH 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 ++ +E+ L ++ + GL R G DY +R +EL+VI Sbjct: 300 KDRMPRFPVPEN--HTQESFLESEVMDGLNRRFPDG------PPPDYVERARYELSVINE 351 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F YFL+V D I A + I VGPGRGS AGS+ A+AL IT+IDP+ LLFERFLNP Sbjct: 352 MGFPAYFLVVGDLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNP 411 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468 +R+SMPD DIDF RR E+I Y K+G ++VAQ+ITFG+++ KAA++D R Q Sbjct: 412 ERVSMPDIDIDFDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQPG 471 Query: 469 YSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 YS DR+ K P A +S + + R+ DP V ++ +++ LE Sbjct: 472 YSIADRITKALPPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALGLE 531 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ L Sbjct: 532 GLIRNAGVHACAVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 591 Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L + RG+ +D+ +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 592 TVIGDALANIKHNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQPT 651 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 EDI+A+ +LYRPGP+ + Y +RKNG++++ IHP ++ L ET G+I+YQ Sbjct: 652 KFEDIVAVGALYRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIVYQ 711 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+ F G NG S+ ++E Sbjct: 712 EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALWET 771 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAAAY ++SY TA++K +YP E++AA +T D+ +K + D R+ Sbjct: 772 VLPFAGYAFNKSHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCRRL 831 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I ++PP VN F I + + +++ VG I+ + F S D+ ++ Sbjct: 832 GITVLPPDVNESFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYLAK 891 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 ++ +++V ESL+ AG D + R L + + +K ++F Sbjct: 892 IEVAACSKKVTESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGSMG 951 Query: 932 GTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 ++ + + E+ +LG Y S HPLD + ++ Sbjct: 952 DEGGGTEPIDDVFTIKVPDEEWDGKHKLALEREMLGLYVSAHPLDGVEHVIAAQTDTPIP 1011 Query: 985 ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V G + + ++ S ++ + G+ + + E FFP Sbjct: 1012 AIVEGDVKDGTQVTVGGILQSVNRRVNKNGAPFASAQIEDLSGGIEVFFFP 1062 >gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135] gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135] Length = 1265 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 360/1147 (31%), Positives = 575/1147 (50%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAMANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PI GC++ + + Sbjct: 63 NGEIKDLKKKIAALESGKEESENPEAEIAACKEQLEAAKKKLFKPIFGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 + ++ P + +V+L +GY LI+LVS+ + R + L++ EGL Sbjct: 120 LEDKEGKPDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + R + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACLGGEVPRRITAGQFEEAEEAIRWYKNLFGDDYYLELQRHKATVARANHEVYPMQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + ++++ A + + LV TN+ F+ EE+ EAHD L+ ++ + +R T + Sbjct: 238 QVVNEKLIEYAKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R EM +F+D+PEAL NTVEI + F HAPI+P F E ++E Sbjct: 298 MKTREEMNEVFADVPEALSNTVEICDKVEFYSIDHAPIMPTFAIPEDFGTEEEYRKKFTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + R + Sbjct: 358 KDLFDEFTRDENGNVVMDEAAAKAKIERLGGYEKLYRIKLEADYLAKLAYDGAKRRYGEN 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 +++ ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS Sbjct: 418 L------SEEVQERIKFELHIMKTMGFPGYFLIVQDFINAARHQLDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITQIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKLIP+ AIA +EA Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKLPDKKLNLPNAIAYVPELQEAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 +P + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPNPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + Q +G+ +++ +P DD TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIRQSKGIVLNIDEVPIDDPATYRLYSEGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855 N+ +I K + + ++++ P VN + F V I + L AIKGVG + + I+ E Sbjct: 892 NITEITKLMDECKSMGVKVLGPDVNESNLKFSVNYRGDIRFGLGAIKGVGESAVQSILDE 951 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNI 908 + F ++ DF RV+ NR+ +E+L AG D F G R +S +I Sbjct: 952 RRKNGEFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDESFSDI 1011 Query: 909 Q-KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNKYQLDKAAAANSLFGGEHEVEVATPEIVPAPSWSDLERLNKERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD + IL + E N + L +V ++ T+ G G + + Sbjct: 1072 LDEFAVILENVCNVHMAELTDLTPLQNHDLVLGGIVTGVREGYTKTGKPYGIAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 TAEFAFF 1138 >gi|261838735|gb|ACX98501.1| DNA polymerase III alpha subunit [Helicobacter pylori 51] Length = 1211 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKSELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGDNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46] gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46] Length = 1294 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 33 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92 Query: 61 -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84 A AG +PIIGC++ + Sbjct: 93 KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 150 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 208 IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T + Sbjct: 268 VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 328 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ G + Sbjct: 388 KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS Sbjct: 448 L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA I Sbjct: 502 AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503 IT+G++ K A++DV R ++P ++ DRL KL+P+ AI + A Sbjct: 562 ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 622 PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618 IE GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+ Sbjct: 682 GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P++ Sbjct: 742 GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G K Sbjct: 802 EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N Sbjct: 862 NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 + I K + + +Q + P VN + F V + I + L A+KGVG + IME Sbjct: 922 ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981 Query: 858 A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 982 KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + ++ ++F + + N R E+ ++G Y S HPL Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101 Query: 969 DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L + E + + G I + +V S ++ ++ G+ G + + Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161 Query: 1027 YEANFF 1032 E FF Sbjct: 1162 AEIPFF 1167 >gi|317013227|gb|ADU83835.1| DNA polymerase III subunit alpha [Helicobacter pylori Lithuania75] Length = 1211 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 371/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A++ + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGHLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK+ +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKSVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G ++I L+ ++ E E LG + SG+PLD ++ ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQIILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFEEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|297380684|gb|ADI35571.1| DNA polymerase III, alpha subunit [Helicobacter pylori v225d] Length = 1211 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|317010167|gb|ADU80747.1| DNA polymerase III subunit alpha [Helicobacter pylori India7] Length = 1211 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNERLDFEDDASYFAYKAREGLKERL---ILVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1144 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 392/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 1236 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 363/1111 (32%), Positives = 569/1111 (51%), Gaps = 92/1111 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G ++ ++DK + +AITD N+F EF Sbjct: 3 DFVHLHVHTYYSILDGQSNIQKLVDKAINNGMRGLAITDHGNMFGIKEFYNYCNKVNGKR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ +PI+GC++ + + +++L +GY+ LI+LVSR Sbjct: 63 KEEGLPPFKPILGCEMYVARNKKESKIKENGDMGGK--HLIVLAKNFQGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L+ EGLI+ + +G + + A + FK++FG Sbjct: 121 W-VDGFYMRPRTDHEDLERYH-EGLIVCSACIAGEVPSKVLKGDYEGAREAARWFKRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++++A ++ +V TN+ F+ ++D E Sbjct: 179 DDYYLELQRHEVKDPSQRANRQTYPLQQKANKALLEIAKELDIKVVCTNDVHFIEKDDAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + ++ +R T + K++ EM +F DLPEA++NT EI + Sbjct: 239 AHDHLICLSTNKDLNDPNRLLYTKQEWFKSKEEMNEVFGDLPEAMQNTCEILDKIELYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE-----EENELRNKA------------VAGLEVRLAQGAIA 329 HAPI+P + E +++ E +L + G + G I Sbjct: 299 DHAPIMPFYPIPEDFGTEEDLRSSISEEDLFKEFTSDENGQNPLPLEEGKKKIEKLGGIE 358 Query: 330 KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 K Y + +R+ FEL+++ M F GYFLIV DFI Sbjct: 359 KLYRVKFEADYLGKLAYDGAKKLYGEPLTDEVDERIKFELHIMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF Sbjct: 419 TARNELGVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R V+ +V+NKYGHE A IIT+G++ K +L+DV R ++P Q + LCK IP+ Sbjct: 479 DGRGLVLEWVENKYGHENCAHIITYGTMATKNSLKDVARVERVPLDQANYLCKSIPDKLP 538 Query: 485 HPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + + A+A ++A D V ++ ++KLEG R HA G +I P+S Sbjct: 539 NDLKMNLTNAVASIPELKQAEESPDEKVRNTIKYAKKLEGTVRGTGVHACGFIICRDPIS 598 Query: 541 QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 VP+ D L TQ++ IE GLIK DFLGLKTL++L++++D + +G+ Sbjct: 599 DWVPISIAEDKTDPGHKLRCTQYDGHVIEDTGLIKMDFLGLKTLSILKEAVDNIQFTKGI 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 K+DL IP DD TY L + T+G FQ ES GM++ L +QP ED+IA+ +LYRPGP Sbjct: 659 KIDLDNIPIDDALTYELYSAGKTIGTFQFESPGMQKHLRSLQPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK KI P ++ LK+T G+ +YQEQVM +A+ L+G++ ++D LR Sbjct: 719 MDYIPDFIERKKDPSKIQYDIPCMEKYLKDTYGITVYQEQVMLLARQLAGFTRGQSDTLR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK+ +MDK + F G KNG + + I+E KFA Y FNKSHA Y+ +S+ Sbjct: 779 KAMGKKLIAQMDKLETLFYEGGVKNGHDQKVLNKIWEDWKKFASYAFNKSHATCYSWVSF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTA++K HYP E++AA ++ ++N+ ++ KF + R I+++ P VN F + Sbjct: 839 QTAYLKAHYPAEYMAAVLSRNLNNITEVIKFIDECRALGIKVLGPDVNESRQKFSANKDG 898 Query: 835 -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + L+AIKG+G A+ I+E + P+ ++ DF RV+ +N++ LE L +GALD Sbjct: 899 IIRFGLSAIKGMGDAAAQSIVEERTKNGPYKNIYDFIERVNINAVNKKALELLALSGALD 958 Query: 893 CF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 F R Q L +D + +Y Q + + ++F + T ++ Sbjct: 959 GFKELKREQYLTKNIKGEPFIDLLVRYGQRYQSEQNQSQNSLFGGDDAAEIPHPTPPEWE 1018 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMV 1001 + E+ +G Y S HPLD + ++ + E +A N+ L +V Sbjct: 1019 EWSHIELLNRERDCIGIYLSAHPLDEFSMVINNLCNANCNELADNLALASKENVALGGIV 1078 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + T+KG G+VT + F Sbjct: 1079 TLSEARTTKKGLPCGFVTIEDFNGSGRLALF 1109 >gi|207723766|ref|YP_002254164.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] Length = 1174 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 406/1062 (38%), Positives = 607/1062 (57%), Gaps = 53/1062 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 112 GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR Q V+LA + +LP+VAT+ F++++D+ AH+ + +A + Sbjct: 172 AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+ A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP +D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA + ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F G +++ L + Sbjct: 888 GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992 ++ + + E++ LGFY SGH D + +R+ + Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGNRDA 1005 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N ++ ++V + + T++G + V + ++ E F Sbjct: 1006 RNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046 >gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis 638R] Length = 1294 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F+ EF+ Sbjct: 33 DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92 Query: 61 -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84 A AG +PIIGC++ + Sbjct: 93 KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 150 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 208 IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + + L+ TN+ F++EE EAHD L+ ++ + +R T + Sbjct: 268 VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 328 MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ G + Sbjct: 388 KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 + + ++RL FEL+++ M F GYFLIV DFI + + +GPGRGS AGS Sbjct: 448 L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF D R EV+R+V KYG E+VA I Sbjct: 502 AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503 IT+G++ K A++DV R ++P ++ DRL KL+P+ AI + A Sbjct: 562 ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559 DP V ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 622 PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618 IE GLIK DFLGLKTL++++++++ + +G+++D+ I +D TY L + T+ Sbjct: 682 GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P++ Sbjct: 742 GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 + LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G K Sbjct: 802 EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N Sbjct: 862 NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857 + I K + + +Q + P VN + F V + I + L A+KGVG + IME Sbjct: 922 ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981 Query: 858 A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908 + PF + DF RV+ N++ +E L AG D F R Q L+ + Sbjct: 982 KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + ++ ++F + + N R E+ ++G Y S HPL Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101 Query: 969 DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 D Y +L + E + + G I + +V S ++ ++ G+ G + + Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161 Query: 1027 YEANFF 1032 E FF Sbjct: 1162 AEIPFF 1167 >gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6] gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6] Length = 1267 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 362/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L+ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELERYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFDEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + + A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K R EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 EEE + + K + G E I Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++++ ++F + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077 Query: 973 PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + A + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|154687056|ref|YP_001422217.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens FZB42] gi|154352907|gb|ABS74986.1| DnaE [Bacillus amyloliquefaciens FZB42] Length = 1115 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 379/1026 (36%), Positives = 592/1026 (57%), Gaps = 38/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A S+ ++ + ++A+TD N ++ A+EF + + GI+P Sbjct: 5 SFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I D + ++LL T GYQ L+++ S + + +G Sbjct: 65 IIGLTASIYTDDTELEAHP----------LILLAETNTGYQNLVKISSALQSMAKGGMK- 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 W++ EGLI +T G +G I+ + A + F++LFGD R Y+ Q Sbjct: 114 ---RKWMKSYH-EGLIAITPGENGYIESLLQTGKFEEAVRAAEGFRELFGDGRFYLGYQP 169 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G++ E +++L+ E+ + A + ++ +ED +A+ L A+ + Sbjct: 170 FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGNLP 228 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL+ EM +++ PEA+E IAR+C + + LP F + K + Sbjct: 229 DL--YLRAPEEMAELYTRHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDG----KSAD 282 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L GL + G + +RL++EL+VI RMKFS YFLIV DF+++A Sbjct: 283 DYLAEICHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF RRD Sbjct: 336 EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ P + Sbjct: 396 EVIQYVQNKYGAMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + ++ +I++K+EGL RH STHAAG+V+ PLS++VP+ + Sbjct: 456 EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + K+D S I + D + Sbjct: 514 GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 574 TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK K+ +D+ Sbjct: 634 RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F Sbjct: 694 ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ IQ++PPS+N F + + YSL A+K VG Sbjct: 754 MCGLLTSVIGNEDKISQYLHEAKGSGIQVLPPSINKSGFPFAPENGAVRYSLRAVKNVGV 813 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R LL S+D Sbjct: 814 SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F + +FS K + + E+ LG YFS HP Sbjct: 874 ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ +L+K G + + +G + + A++ + +T+ G + ++T S+ E Sbjct: 930 LSAFRDLLKKRGAQAITAARQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988 Query: 1028 EANFFP 1033 EA FP Sbjct: 989 EAVVFP 994 >gi|308064219|gb|ADO06106.1| DNA polymerase III subunit alpha [Helicobacter pylori Sat464] Length = 1211 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 582/1078 (53%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174 RI L+E ++G+I + G ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTYNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---FLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSVAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|281358509|ref|ZP_06244989.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548] gi|281314991|gb|EFA99024.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548] Length = 1187 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 366/1039 (35%), Positives = 573/1039 (55%), Gaps = 19/1039 (1%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL +H+ YS+L+GA ++ +L + A+AITD + EF Q Sbjct: 1 MPS--DFVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI PIIG + + D ++ + K ++LL +GY L +++S D Sbjct: 59 AGINPIIGVEAYVAPGD-MRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAAN-KDG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI +++ +GLI + G I + + + AE+ L + +FG D + Sbjct: 117 FHYKPRIDKELMRQYH-KGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFF 175 Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L H + + +V+LA ++L L+ATN+ ++ +ED EAH++++ + +++ Sbjct: 176 IELMDHGMEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE 235 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEKEC 300 K P+ Y K+ +EM +F +LPE++ NT IA RCS P+F + Sbjct: 236 KHFRFPAPEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYVPEVNHYPKFYMPDG 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + E+ + + + +R+++EL VI + F YF +V Sbjct: 296 RLADRNDLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVV 355 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+ AK +IPVGPGRGSGAGS+ AY ITDIDPLRF+L FERFLNP+R+S PDFD+ Sbjct: 356 SDFIRHAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDV 415 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC+ RR EVI YV+ +YG + VAQI T+G L+AKA ++DV R L + +RL K+IP Sbjct: 416 DFCERRRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIP 475 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + +A+ + E DP + ++ + ++ LEGL R HAAG++IGD+ L Sbjct: 476 EDPKMTLD-KAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLD 534 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 LVP+ R SD V F E+ GL+K DFLGLKTLT+++ +LD + + + +D Sbjct: 535 NLVPLAR-SASDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGIVIDTM 593 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ +L T+ +FQLES GM+ + +E IIAL+++YRPGP+ I Sbjct: 594 KIPLDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQFIP 653 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + RK G+EKI+ HPL++ LKET G+++YQEQ+MQ+ Q+L+G++L AD+LRRA+GK Sbjct: 654 DFIRRKKGEEKIIYDHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRRAIGK 713 Query: 720 KIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K + + KQKE+F G + + +A I+E + FA YGFNKSH+AAY + YQTA+ Sbjct: 714 KKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCYQTAY 773 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K +YPV+F+AA + E+++ E+I ++ I ++PP VN+ + F + I + Sbjct: 774 LKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFSTDNGNIRFG 833 Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L AIKGVG A I+E+ D F++ DFC R +N R+LE L AGALD G Sbjct: 834 LGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCG-SNVNSRMLEHLTRAGALDGLGLR 892 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFEN 954 R Q+L + + +A ++R ++F G +D + + + ++ Sbjct: 893 RSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKEDILKS 952 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GS 1013 E+ +LGFY +GHPLD Y ++R IR+A MV + QK ++ G Sbjct: 953 EKELLGFYVTGHPLDPYAELVRTYSTVPIRSLEELNDNAQIRIAGMVNTFTQKLSKNSGK 1012 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + G + + E + Sbjct: 1013 QFGILLLEDLDASCECMIY 1031 >gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319] gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319] Length = 1239 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 354/1114 (31%), Positives = 545/1114 (48%), Gaps = 95/1114 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 ++HL VH++YS+L+G + ++DK AD +AITD +F EFS Sbjct: 3 DYIHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFSDYCAKVNKER 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G +PI GC++ + + + +++L GY+ LI+LVS Sbjct: 63 KKNGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYNGYKNLIKLVSHA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R + L++ E LI+ + +G I A + + ++FG Sbjct: 121 W-VDGYYYRPRTDRAELEKYH-EDLIVCSACIAGEIPSKIIHGDIDGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++Q A + + +V TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPTILANREAFPLQQKANKVLLQFAKEYGIKVVCTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ +A + + R R + + K+R EM +FSD+PEAL NT+E+ + Sbjct: 239 AHDHLLCLATNEDLDDPKRMRYSKQEWFKSRQEMNDVFSDIPEALTNTLEVLDKVEIYSI 298 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNK-----------------AVAGLEVRLAQGAIA 329 H PI+P F E ++E E + + G +V G Sbjct: 299 DHGPIMPFFPIPESFGTEEEWEKKFTEEDLYKEFTTDENGENPLSPEEGQKVIERLGGYE 358 Query: 330 KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 K Y + + + + FEL+V+ M F GYFLIV DFI Sbjct: 359 KIYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF Sbjct: 419 AARQELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R V+++V +KYGHE A IIT+G++ K +++DV R ++P + + LCK IP+ Sbjct: 479 DGRGRVLQWVMDKYGHENCAHIITYGTMATKNSIKDVARVEKLPIAIANELCKAIPDRLP 538 Query: 485 HPVSLQ---AIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI + ++A +++ ++ ++ LEG R+ HA G +I P+ Sbjct: 539 DGMKMNLANAIKCTPQLQDAEVSEDIRERNTIKYARMLEGTVRNTGIHACGFIICRNPID 598 Query: 541 QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Q Sbjct: 599 DWVPVSTATDPDFPEKKVPVTQYDGHVIEATGLIKMDFLGLKTLSELKEACKVIRQTTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ +LYRPGP Sbjct: 659 IIDLDNIPIDDELTYQLYQKGQTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ E+D LR Sbjct: 719 MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D+ K +FI NG I I+ KFA Y FNKSHA Y+ ++Y Sbjct: 779 KAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYAFNKSHATCYSWVAY 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP E++AA MT + +I K ++ + I + P +N + F V Sbjct: 839 QTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDINESQIGFGVNKKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+GT+ A I+ E + P+ + DF RVD +NR+ ESL ++G D Sbjct: 899 EIRFGLAAIKGMGTSAAESIVSEREKNGPYKDIYDFAERVDLSNVNRKAFESLAYSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R Q LD I +Y Q + + + ++F K Sbjct: 959 SFGLQREQFFGVSGRDSVFLDIIVRYGQLFQTEKAEQQNSLFGGMDAVAVMHPVAPKTEK 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAA 999 + + E+ ++G Y S HPLD Y +L M + + + + Sbjct: 1019 WPTIEKLNKERELVGVYLSAHPLDEYSVVLNNMCNTHCSMIGRNADMTKLSQTDEVTFGG 1078 Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 +V S ++ + + G G+VT + E F Sbjct: 1079 IVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112 >gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron VPI-5482] gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron VPI-5482] Length = 1267 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 362/1142 (31%), Positives = 566/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + + A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K R EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 EEE + + K + G E I Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++++ ++F + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077 Query: 973 PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + A + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6] gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6] Length = 1188 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 403/1061 (37%), Positives = 592/1061 (55%), Gaps = 51/1061 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL+ H+ YS+++G L ++ I+ A D QPA+AITD NLF A++F ++A G++P Sbjct: 2 SFVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + ++ + ++LLV GY L E++SR ++ + + Sbjct: 62 IIGADIWLEPEGI-----GAAGEVRPATRLLLLVQNEPGYLNLCEILSRAWVQNVQRNQA 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + WL E+ GLI L+GG G + ++ + A + +F R Y+ +QR Sbjct: 117 WVKWEWLDEL-NGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRA 175 Query: 190 R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 G+D + V LA +LP+VAT+ +L+ +D++AH+ + VA ++ RPR Sbjct: 176 GLPGHDALVLAT-VPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D + K ++EM ++F+D+P AL NT+EIARRCS L + P LP F D Sbjct: 235 RFGRDQHFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSM 294 Query: 307 E-ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E+ R + GLE RL + Y +RL+FEL I +M F GYFLIV+D Sbjct: 295 PMEDYFRQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSD 354 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+WAK N PVGPGRGSGAGS+ AY L+ITD+DPL ++LLFERFLNP+R+SMPDFDIDF Sbjct: 355 FIRWAKANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDF 414 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD VI YV+++YG V+QI TFG++ AKAALRD+GR L M Y VD + KLIP Sbjct: 415 CQGNRDRVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAP 474 Query: 483 PAHPVSLQAIADDSRFRE---------------ARLADPSVDRLLEISQKLEGLYRHAST 527 P V+L + + + R+ + V LL ++ ++EG+ R+ Sbjct: 475 PGKSVTLARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGM 534 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QK 584 HA G++I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L ++ Sbjct: 535 HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKE 594 Query: 585 SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + + IP DD Y L + T +FQ ES GM++ L+ +P +ED+I Sbjct: 595 FIVARHENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLI 654 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 AL +LYRPGP+D I + RK+GKE + HP+++ +L ET G+++YQEQVMQ AQ+L G Sbjct: 655 ALNALYRPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGG 714 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKK EEM + + F GA+ N IS+ A IF+L+ KFA YGFNKS Sbjct: 715 YSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKS 774 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAAAY++++Y TAW+K H+ EF AA+MT+E+D+ +K++ QDA +F +Q P VN Sbjct: 775 HAAAYSLLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALKFGVQFESPDVNVG 834 Query: 825 CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 F+ + I Y L AIKG G I+ A PF S+ DFC+RVD K +N Sbjct: 835 VYRFEPAPGKAGNKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSIN 894 Query: 879 RRVLESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHE 930 +RV+E+LV AGA D R +LL S+ +YA + +F + Sbjct: 895 KRVIEALVKAGAFDKLHPKGLDGRAELLASVGLALEYA--GTQAAHADQSGLFDFGGGDD 952 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 G+ + + + R +E+ +G++ SGH D +R+ + E+ + Sbjct: 953 HGSSTREPDYVAAETWDVKQRLSHEKIAIGYFLSGHLFDQVAAEVRQFAKRRIEDLSDSR 1012 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 LA +V + +G + + EA Sbjct: 1013 DPQ--TLAGIVTDLRIVNGHRGK-VAIFKLDDKTAAIEAVV 1050 >gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14] gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14] Length = 1267 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 362/1142 (31%), Positives = 566/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + + A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305 +K R EM +F+D+PEAL NT+EI + + HAPI+P F E ++ Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357 Query: 306 ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 EEE + + K + G E I Sbjct: 358 KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++RL+FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861 K + + IQ + P VN + F V D I + L A+KGVG + I+E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 ++++ ++F + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077 Query: 973 PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + A + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] Length = 1176 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 406/1064 (38%), Positives = 607/1064 (57%), Gaps = 55/1064 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 112 GRAEIAPEWFDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR Q V+LA + +LP+VAT+ F++++D+ AH+ + +A + Sbjct: 172 AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+ A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP +D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA + ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F G +++ L + Sbjct: 888 GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990 ++ + + E++ LGFY SGH D + +R+ + Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGNR 1005 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N ++ ++V + + T++G + V + ++ E F Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048 >gi|217033909|ref|ZP_03439333.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10] gi|216943672|gb|EEC23117.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10] Length = 1211 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKTYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K++F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKDKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|119962046|ref|YP_947481.1| DNA polymerase III subunit alpha [Arthrobacter aurescens TC1] gi|119948905|gb|ABM07816.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1] Length = 1186 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 372/1071 (34%), Positives = 549/1071 (51%), Gaps = 55/1071 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA Sbjct: 4 SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDK 63 Query: 66 GIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + + + + + + LL G + L Sbjct: 64 GIKPIIGVEAYVTPGTARGDKERVRWGDESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFR 123 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 S L + R+ L +EGLI TG SG + + A + F Sbjct: 124 ASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTKLRLGQYREAVEAAAEF 182 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG + + L H +R +++LA LPLVATN+ + E D +AH+ L+ Sbjct: 183 RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALL 242 Query: 233 AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 A+ + + + +YLK+ EM +F D PEA +NT+ IA RC Sbjct: 243 AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSF 302 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 A +PRF +D E + L + GL+ R QG R++ D+EL Sbjct: 303 NTGANYMPRFPCPPGED----ETSWLVKEVDTGLKYRYPQG------IPDKVRKQADYEL 352 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FE Sbjct: 353 GVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFE 412 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R L Sbjct: 413 RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTKKYGDERVAMIVTYGTIKTKQALKDSSRVL 472 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEISQ 516 P+S ++L K +P A + FR+ DP ++ E + Sbjct: 473 GYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLIATDPEAAKVFETAL 532 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HAAG+++ P+ ++P+ R + +TQF+ E GLIK DFLGL Sbjct: 533 GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGL 592 Query: 577 KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ +L+ + RGV +DL + DD +Y LL TLG+FQL+ MR L+ M Sbjct: 593 RNLTIISDALENIKMNRGVDLDLENLELDDAASYELLARGDTLGVFQLDGGPMRSLLKLM 652 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689 +PD EDI A+++LYRPGP+ + Y RKNG ++++ IHP ++ LKE T G+I Sbjct: 653 KPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTFGLI 712 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S + Sbjct: 713 VYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTL 772 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 +++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + + Sbjct: 773 WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 832 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 R+ I ++PP VN ++F I + + AI+ VG ++ A + + S +DF Sbjct: 833 RRMGITVLPPDVNESSLNFTPVGTDIRFGMGAIRNVGVNVVDAMVAARKSEGKYTSFKDF 892 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +V + N+R +ESL+ AGA D G+ R L + +++N ++FA Sbjct: 893 LLKVPAVVCNKRTIESLIKAGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 952 Query: 929 HEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + + + + E+ +LG Y S HPL + +L + + Sbjct: 953 GFEDQEPEASLTTEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEQSITS 1012 Query: 986 SVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +A G + +A M+ S ++ G+ + E FF Sbjct: 1013 IIAEDGPHDGAIVTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1063 >gi|308062724|gb|ADO04612.1| DNA polymerase III subunit alpha [Helicobacter pylori Cuz20] Length = 1211 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 IYQEQVMQI Q + G+SL E+D++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 IYQEQVMQIVQTIGGFSLGESDLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus] Length = 1185 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 313/1068 (29%), Positives = 503/1068 (47%), Gaps = 44/1068 (4%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S SFVHL H+ YS+L+GA + +L ++ A+ +TD N++ A EF A Sbjct: 1 MSSSNSSFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAA 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113 A G++PIIG + I + + + ++ A G + L Sbjct: 61 ATGVKPIIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLF 120 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +L S Q + R+ + E + G+I TG SG + A Sbjct: 121 KLSSLASFEGQLGKWARMDADLIAEHAS-GIIATTGCPSGEVQTRLRLGQESEALAAAAK 179 Query: 174 FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ +FG D ++ L H +R ++++ +P +ATN+ +++++ H+ L Sbjct: 180 WQDIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEAL 239 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + V +S R + D Y + + D + Sbjct: 240 LCVQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWN 299 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + +++++ LR + GLE R G +Y R +EL+VI + Sbjct: 300 FKDRMPIFPVPEGEDQDSWLRKEVDRGLERRFEGVP---GGVPDEYFTRAHYELDVIKQK 356 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F YFL+V D + AK+ I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+ Sbjct: 357 GFPAYFLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPE 416 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R S PD DIDF RR E++RY K+G +RVAQ+ITFG+++ KAAL+D R Sbjct: 417 RPSAPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGF 476 Query: 472 VDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 + K IP + + + R DP V + + + LEG Sbjct: 477 AIADRITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALGLEG 536 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R+A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT Sbjct: 537 LIRNAGVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 596 Query: 581 LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ +LD + RG+ +DL +P DD TY LL+ TLG+FQL+ MR L MQP Sbjct: 597 VIGDALDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQPTG 656 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK+ T G+I+YQE Sbjct: 657 FNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIVYQE 716 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 Q+M IAQ ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 717 QIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALWDTI 776 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ Sbjct: 777 LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLG 836 Query: 814 IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 I ++PP VN +F I Y L ++ VG + ++ + F D+ ++ Sbjct: 837 ITVLPPDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYLHKI 896 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D N++V ESLV AGA D G+ R L + +K ++F Sbjct: 897 DIAACNKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFGGGGE 956 Query: 933 TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 I + + E+ +LG Y SGHPL+ +L + + Sbjct: 957 DSVPASDIFAIKVPD-DEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSRQTDTQIPAIL 1015 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +++ ++ S ++ + G + E FFP Sbjct: 1016 DGEVANDAVVKVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVLFFP 1063 >gi|317178164|dbj|BAJ55953.1| DNA polymerase III subunit alpha [Helicobacter pylori F16] Length = 1211 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|291296502|ref|YP_003507900.1| DNA polymerase III subunit alpha [Meiothermus ruber DSM 1279] gi|290471461|gb|ADD28880.1| DNA polymerase III, alpha subunit [Meiothermus ruber DSM 1279] Length = 1257 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 396/1096 (36%), Positives = 579/1096 (52%), Gaps = 87/1096 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65 F HL H+ +SLL+GA L ++L + P +A+TD N+F A++F + A Sbjct: 22 FAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEE---PMLAMTDHGNMFGAVQFYKYATEL 78 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIG + + + QGK + LL EGYQ L L SR YL + Sbjct: 79 GVKPIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYL-EGF 136 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 RI L+E G+I L+G I + + AEKRL + +FG +R ++ Sbjct: 137 YGKPRIDREILRE-HNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFI 195 Query: 185 NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +Q H ++++ ++V+ + A + L LVATN+ ++ ++D EAH VL+AV Sbjct: 196 EIQNHGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDP 255 Query: 244 DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRC------SFILQVHAPILPRFI 296 +R + D Y+K+ EM F D + ++ +++ + I Sbjct: 256 NRWKFPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRI 315 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLA-------------------------------- 324 K + E R GL R Sbjct: 316 PKYPLPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELA 375 Query: 325 --QGAIAKGYHAQDYRQ-----------RLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + A H + R+ R +EL V+ RM F GY LIV+DFI WAK N Sbjct: 376 RIEDLEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNG 435 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I VGPGRGS AGS+ YA IT+IDPL ++LLFERFLNP R+SMPD D DF RR EVI Sbjct: 436 ISVGPGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVI 495 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490 YV+ +YG E VAQI TFG+L +KAA++D R +P + D L KLIP P+ + Sbjct: 496 EYVRQRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDK 555 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 AI R DP V R+LE++QKLEGL R +S HAAG+VI D PL +P+ R Sbjct: 556 AIETIPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGD 615 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609 + VTQ++M +E G +K DFLGL+TL+ L + + + +GV++D +P DD +T+ Sbjct: 616 TGAKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVELDYDNLPIDDAKTF 675 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQL+S+GM A+ G++P I+DIIAL +LYRPGP++NI Y R +G+E Sbjct: 676 ELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGRE 735 Query: 670 KIVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 ++ I P+L+ET G+ +YQEQ+MQIA ++GYSL EAD+LRRAMGKK EE Sbjct: 736 EVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKMEE 795 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQ+ +F GA+KNGI A +F+LL FA+YGFNKSHAAAYA+++YQTA++K H+P Sbjct: 796 MVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAHFP 855 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEF AA +T+E + +K+ ++ + AR ++++PP +N F+ + + + L+A+K Sbjct: 856 VEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKSVLFGLSAVKN 915 Query: 845 VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 VG T I+ P+ SL DF R+D N+RV+ESL+ AGA D FG R +L Sbjct: 916 VGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGPMLA 974 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 +LD++ K+AQ + + +F + + ++ + E+ LG Y Sbjct: 975 ALDDLLKWAQAEREQAQSGMMGLFGESL-----EPVIPAVPQLDAITQLRMEKEALGIYV 1029 Query: 964 SGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +GHPL Y+ LR+ E + LA MV +K T+ G + Sbjct: 1030 TGHPLSRYQG-LREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGGMLV 1088 Query: 1017 WVTFSEPAKEYEANFF 1032 T ++ E F Sbjct: 1089 RFTLADETGAVEVVAF 1104 >gi|300690877|ref|YP_003751872.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07] gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07] Length = 1174 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 405/1062 (38%), Positives = 603/1062 (56%), Gaps = 53/1062 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPVVGADVWITNHDERDKPG----------RLLLLVRNKQGYLNLCMLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G G I A + +A K + +F + Sbjct: 112 GRAEIAPEWFGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPE 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR + V+LA + LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 172 AFYIELQRAGQAGTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL N V+IA+RC+ L++ P LP F Sbjct: 232 LANPRRARRFTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+ + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLAHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + + F +GA+K+G++ A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA + ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D + Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTLRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F G +++ L + Sbjct: 888 GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992 + + + E++ LGFY SGH D + +R+ + + Sbjct: 946 TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDA 1005 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N +A ++V + + T++G + V + ++ E F Sbjct: 1006 RNKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046 >gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483] gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483] Length = 1268 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 362/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IM E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|328554543|gb|AEB25035.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens TA208] gi|328912947|gb|AEB64543.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1112 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 377/1026 (36%), Positives = 591/1026 (57%), Gaps = 38/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S YSLL A S+ I+ + ++A+TD N ++ A+EF + + GI+P Sbjct: 2 SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I + +VLL T GYQ L+++ S + + +G Sbjct: 62 IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 W++ EGLI +T G +G I+ + A + F++LFG+ R Y+ Q Sbjct: 111 ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G++ E +++L+ E+ + A + ++ +ED +A+ L A+ + Sbjct: 167 FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDLP 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL+ EM +I+ PEA++ +A++C + + LP F + K + Sbjct: 226 DL--YLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L GL + G + +RL++EL+VI RMKFS YFLIV DF+++A Sbjct: 280 DYLAEVCHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF RRD Sbjct: 333 EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ P + Sbjct: 393 EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + ++ +I++K+EGL RH STHAAG+V+ PLS++VP+ + Sbjct: 453 EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + K+D S I + D + Sbjct: 511 GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 571 TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK K+ +D+ Sbjct: 631 RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F Sbjct: 691 ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ +Q++PPSVN F + + YSL AIK VG Sbjct: 751 MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R LL S+D Sbjct: 811 SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F + +FS K + + E+ LG YFS HP Sbjct: 871 ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 926 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ +L+K G + ++ +G + + A++ + +T+ G + ++T S+ E Sbjct: 927 LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 985 Query: 1028 EANFFP 1033 EA FP Sbjct: 986 EAVVFP 991 >gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv] gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551] gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97] gi|121637469|ref|YP_977692.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661343|ref|YP_001282866.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148822771|ref|YP_001287525.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis F11] gi|167968102|ref|ZP_02550379.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra] gi|215411208|ref|ZP_03420016.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|215426890|ref|ZP_03424809.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T92] gi|215430440|ref|ZP_03428359.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|215445744|ref|ZP_03432496.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T85] gi|218753267|ref|ZP_03532063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis GM 1503] gi|219557457|ref|ZP_03536533.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T17] gi|224989943|ref|YP_002644630.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|253799398|ref|YP_003032399.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 1435] gi|254231775|ref|ZP_04925102.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|254364418|ref|ZP_04980464.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|254550566|ref|ZP_05141013.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186497|ref|ZP_05763971.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CPHL_A] gi|260200607|ref|ZP_05768098.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T46] gi|260204831|ref|ZP_05772322.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis K85] gi|289443001|ref|ZP_06432745.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T46] gi|289447158|ref|ZP_06436902.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CPHL_A] gi|289554661|ref|ZP_06443871.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 605] gi|289569583|ref|ZP_06449810.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T17] gi|289574231|ref|ZP_06454458.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis K85] gi|289750114|ref|ZP_06509492.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T92] gi|289753634|ref|ZP_06513012.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|289757663|ref|ZP_06517041.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis T85] gi|289761710|ref|ZP_06521088.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|294996513|ref|ZP_06802204.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 210] gi|297634115|ref|ZP_06951895.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN 4207] gi|297731102|ref|ZP_06960220.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN R506] gi|298525059|ref|ZP_07012468.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|306775736|ref|ZP_07414073.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu001] gi|306779560|ref|ZP_07417897.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu002] gi|306784291|ref|ZP_07422613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu003] gi|306788659|ref|ZP_07426981.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu004] gi|306792998|ref|ZP_07431300.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu005] gi|306797377|ref|ZP_07435679.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu006] gi|306803258|ref|ZP_07439926.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu008] gi|306807837|ref|ZP_07444505.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu007] gi|306967657|ref|ZP_07480318.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu009] gi|307079560|ref|ZP_07488730.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu011] gi|307084125|ref|ZP_07493238.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu012] gi|313658434|ref|ZP_07815314.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN V2475] gi|54036990|sp|P63978|DPO3A_MYCBO RecName: Full=DNA polymerase III subunit alpha gi|54040951|sp|P63977|DPO3A_MYCTU RecName: Full=DNA polymerase III subunit alpha gi|1403495|emb|CAA98315.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE1 (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13881224|gb|AAK45865.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis CDC1551] gi|31618323|emb|CAD96241.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis AF2122/97] gi|121493116|emb|CAL71587.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600834|gb|EAY59844.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|134149932|gb|EBA41977.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|148505495|gb|ABQ73304.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis H37Ra] gi|148721298|gb|ABR05923.1| DNA polymerase III alpha subunit dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis F11] gi|224773056|dbj|BAH25862.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|253320901|gb|ACT25504.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 1435] gi|289415920|gb|EFD13160.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T46] gi|289420116|gb|EFD17317.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CPHL_A] gi|289439293|gb|EFD21786.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 605] gi|289538662|gb|EFD43240.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis K85] gi|289543337|gb|EFD46985.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T17] gi|289690701|gb|EFD58130.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis T92] gi|289694221|gb|EFD61650.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054] gi|289709216|gb|EFD73232.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|289713227|gb|EFD77239.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis T85] gi|298494853|gb|EFI30147.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|308215828|gb|EFO75227.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu001] gi|308327494|gb|EFP16345.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu002] gi|308330956|gb|EFP19807.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu003] gi|308334777|gb|EFP23628.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu004] gi|308338566|gb|EFP27417.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu005] gi|308342267|gb|EFP31118.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu006] gi|308345762|gb|EFP34613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu007] gi|308350062|gb|EFP38913.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu008] gi|308354716|gb|EFP43567.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu009] gi|308362582|gb|EFP51433.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu011] gi|308366247|gb|EFP55098.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis SUMu012] gi|323719995|gb|EGB29107.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis CDC1551A] gi|326903177|gb|EGE50110.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis W-148] gi|328459148|gb|AEB04571.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis KZN 4207] Length = 1184 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 331/1069 (30%), Positives = 526/1069 (49%), Gaps = 47/1069 (4%) Query: 5 LEKSP---SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF Sbjct: 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 Query: 62 ACAAGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQR 111 A AGI+PIIG + I + + + ++ A G + Sbjct: 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S Q + R+ + E EG+I+ TG SG + + A + Sbjct: 121 LFKLSSHASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAA 179 Query: 172 LTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++++ G D ++ L H +R ++++ +P +ATN+ +++ + H+ Sbjct: 180 AKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHE 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V +S +R + D Y + + D + Sbjct: 240 ALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADV 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + ++ + LR++ AGL R G YR+R +E++VI Sbjct: 300 WTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAG------PPDGYRERAAYEIDVIC 353 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIVAD I +A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLN Sbjct: 354 SKGFPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLN 413 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q Sbjct: 414 PERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQP 473 Query: 468 PYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKL 518 ++ DR+ K P A + S + + + R DP V + + ++ L Sbjct: 474 GFAIADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGL 533 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 534 EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRN 593 Query: 579 LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++D + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 LTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQP 653 Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691 ED++A+++LYRPGP+ Y +RKN ++ I IHP ++ L ET G+I+Y Sbjct: 654 TGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVY 713 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++ Sbjct: 714 QEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWD 773 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 774 TILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 833 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 I ++PP VN ++F I Y L A++ VG +++ D F D+ + Sbjct: 834 LGITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLN 893 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-H 929 ++D N++V ESL+ AGA D G++R L + +K ++F + Sbjct: 894 KIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSN 953 Query: 930 EKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + GT + + E+ +LG Y SGHPL+ +L Sbjct: 954 DDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAI 1013 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +R+ ++ S ++ + G + E FFP Sbjct: 1014 LDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062 >gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 1180 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 328/1067 (30%), Positives = 535/1067 (50%), Gaps = 51/1067 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+G +N + ++ A PA+ +TD N++ A EF + A G+ Sbjct: 2 ADSFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + + + + ++ A+G L++L S Sbjct: 62 KPIIGIEAYLAPSSRFSTKREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L E G G+I TG SG + + A + F+++ Sbjct: 122 LASIEGQLGKWPRMDAEILAEHGR-GIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQEI 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + Y+ L H +R +++L ++P +ATN+ ++ +E H++L+ V Sbjct: 181 FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVKQEHARGHEILLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRS--EMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 +S R + D Y + + S +P A +NT+ +A + +V Sbjct: 241 TGKTMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWEKRDR 300 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + D +++ + L + GLE R G A++YR R FEL+VI + F Sbjct: 301 MPVFPVPDG--EDQNSWLAKEVDRGLERRFPDGV------AEEYRARAAFELDVIKQKGF 352 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFL+V D I +A+ I VGPGRGS AGS+ +YAL IT++DP+ LLFERFLNP+R Sbjct: 353 PSYFLVVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLLFERFLNPERP 412 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 S PD DIDF RR E+IRY K+G +RVAQ+ITFG+++ KAA++D R L Sbjct: 413 SAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSARVLHGQPGFSI 472 Query: 474 R-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 + K IP + + + RE +DP V ++ E + LEGL Sbjct: 473 ADRITKALPPAIMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIYETALSLEGLI 532 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA I++ + PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 533 RNAGVHACAIIMSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVI 592 Query: 583 QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++ + Q RG+++DL +P D T+ LL+ TLG+FQL+ MR L M+P Sbjct: 593 GDAIENIRQNRGIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDLLRRMRPTGFG 652 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI+A++SLYRPGP+ + Y +RKNG+++I IHP ++ LK ET G+I+YQEQ+ Sbjct: 653 DIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAETYGLIVYQEQI 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ YS+ +AD LR+AMGKK E + + E F +G NG S+ +++ + Sbjct: 713 MFIAQKVASYSMGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAAIKALWDTVLP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FADY FNKSHAA Y +++Y TA++K +YP E++AA +T D+ +K + D R+ I Sbjct: 773 FADYAFNKSHAACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGIT 832 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 ++ P VN VDF I + L+A++ VG I+ A+ F S D+ ++ D Sbjct: 833 VLAPDVNKSRVDFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTSFSDYLAKADI 892 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++ +ESL+ AG D G+ R L +K ++F+ + Sbjct: 893 AACNKKAVESLIKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQYDLFSDFFESG 952 Query: 935 SDKIT------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987 S ++ + + + E+ +LG Y SGHPL + L + Sbjct: 953 SPELASTFETQIPD-EEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILD 1011 Query: 988 -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G ++++ ++ ++ + G+ + E FP Sbjct: 1012 GEVKDGTSVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058 >gi|308174617|ref|YP_003921322.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307607481|emb|CBI43852.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] Length = 1115 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 377/1026 (36%), Positives = 591/1026 (57%), Gaps = 38/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S YSLL A S+ I+ + ++A+TD N ++ A+EF + + GI+P Sbjct: 5 SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG I + +VLL T GYQ L+++ S + + +G Sbjct: 65 IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 113 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 W++ EGLI +T G +G I+ + A + F++LFG+ R Y+ Q Sbjct: 114 ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 169 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G++ E +++L+ E+ + A + ++ +ED +A+ L A+ + Sbjct: 170 FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDLP 228 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL+ EM +I+ PEA++ +A++C + + LP F + K + Sbjct: 229 DL--YLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 282 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L GL + G + +RL++EL+VI RMKFS YFLIV DF+++A Sbjct: 283 DYLAEVCHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF RRD Sbjct: 336 EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQNKYG VAQIITFG+L AKAALRD GR + + D+L +LIP+ P + Sbjct: 396 EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + ++ +I++K+EGL RH STHAAG+V+ PLS++VP+ + Sbjct: 456 EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + K+D S I + D + Sbjct: 514 GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLESSGMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 574 TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + ++ H + +L +T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK K+ +D+ Sbjct: 634 RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F Sbjct: 694 ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ +Q++PPSVN F + + YSL AIK VG Sbjct: 754 MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 813 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F +R LL S+D Sbjct: 814 SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F + +FS K + + E+ LG YFS HP Sbjct: 874 ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ +L+K G + ++ +G + + A++ + +T+ G + ++T S+ E Sbjct: 930 LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988 Query: 1028 EANFFP 1033 EA FP Sbjct: 989 EAVVFP 994 >gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000] gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia solanacearum GMI1000] Length = 1173 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 408/1061 (38%), Positives = 606/1061 (57%), Gaps = 52/1061 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPIVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + W E G E GL+ L+G G I A + +A K + ++F Sbjct: 112 GRAEVAPEWFGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR Q V+LA + +LP+VAT+ F++ +D+ AH+ + +A + Sbjct: 172 SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL NT +IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+++ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTIEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + ++ Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR + + ++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F +++ L + Sbjct: 888 GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993 ++ + + E++ LGFY SGH D + +R+ + + Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N +A ++V + + T++G + V + ++ E F Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045 >gi|317179636|dbj|BAJ57424.1| DNA polymerase III subunit alpha [Helicobacter pylori F30] Length = 1211 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4] gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23] gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4] gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23] Length = 1268 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 362/1142 (31%), Positives = 562/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 +K R EM +F+D+PEAL NT+EI + + HAPI+P F E ++ + Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYREKFTE 357 Query: 314 KAVAGLEVRLAQGA-----------------------------------------IAKGY 332 K + + G I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IM E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC 3f] gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC 3f] Length = 1268 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 363/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IM E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|319901087|ref|YP_004160815.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108] gi|319416118|gb|ADV43229.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108] Length = 1265 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 356/1147 (31%), Positives = 564/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF Sbjct: 3 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSAP 62 Query: 59 ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84 ++ AGI +P+IGC++ + Sbjct: 63 RGEIKELKKRIAGIESGEIECEDREMEIAGCRAKIAEAESKLFKPVIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R + L++ EGL Sbjct: 120 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRNELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IICSACIGGEVPKKIINDRLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPMQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 QKANAKLLEYAKKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM ++F D+PEAL NT+EI + + HAPI+P F E ++E Sbjct: 298 MKTKAEMNALFEDIPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKKYSE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 358 KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKKLYGDP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++R+ FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 418 L------SDEVKERMIFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V KYG E+VA Sbjct: 472 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AI + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEA 591 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL+++++++ + RGV++D+ I D TY L T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGVELDIDKISIKDPATYKLYCDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 832 KNGHEPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ I K + + I + P VN + F V + I + L A+KGVG + IME Sbjct: 892 NITDITKLMDECKAMGINTLGPDVNESNLKFTVNREGNIRFGLGAVKGVGEGAVQSIMEE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + P+ + DF RV+ N++ +E L AG D F R Q ++ Sbjct: 952 REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEIFIET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E + G I + +V S ++ ++ G+ G + + Sbjct: 1072 LDEYAVVLEHVCNTRMAEVEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAEFPFF 1138 >gi|317014874|gb|ADU82310.1| DNA polymerase III subunit alpha [Helicobacter pylori Gambia94/24] Length = 1211 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 371/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKEEGLDFEDDASYFAYKAREGLKERL---ILVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E A Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15] Length = 1173 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 409/1061 (38%), Positives = 604/1061 (56%), Gaps = 52/1061 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G G I A + +A K + ++F Sbjct: 112 GRAEIAPEWFGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR Q V+LA + +LP+VAT+ F++ +++ AH+ + +A + Sbjct: 172 SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R T D Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L A GLE R+ + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR + + ++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F +++ L + Sbjct: 888 GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993 ++ + + E++ LGFY SGH D + +R+ + + Sbjct: 946 STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N +A ++V + + T++G + V + ++ E F Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045 >gi|163841216|ref|YP_001625621.1| DNA polymerase III subunit alpha [Renibacterium salmoninarum ATCC 33209] gi|162954692|gb|ABY24207.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC 33209] Length = 1176 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 369/1065 (34%), Positives = 557/1065 (52%), Gaps = 49/1065 (4%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + SFVHL H+ YS+L+GA L ++ + A ++A TD +F A +F KA Sbjct: 1 MTGTESSFVHLHNHTEYSMLDGAARLTDLFEHTAELGMNSLATTDHGFVFGAFDFWSKAK 60 Query: 64 AAGIQPIIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + + D ++ + + L T +G L Sbjct: 61 NAGIKPIIGVEAYLTPGTAHNDRTRVKWGDGSGKDVAGAGAYTHMTLWSETTQGMHNLFR 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + S L + R+ LQ G +GLI TG SG + + A + F Sbjct: 121 MSSLASL-EGYLYKPRMDRDLLQTYG-KGLIASTGCPSGEVPTKLGLGLYKEAVQAASDF 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + +FG Y L H +R ++ +++LA LPLVATN+ + ED AH L+ Sbjct: 179 QDIFGKGNFYCELMDHGLDIERNVKADLLKLAKELNLPLVATNDLHYTHAEDASAHAALL 238 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 V + ++ R + + YLK+ EM +F D P+A +NT+ IA RC A Sbjct: 239 CVQSGSTLADPKRFKFDADEFYLKSPLEMRELFRDFPDACDNTLLIAERCEVAFDTGASY 298 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 +PRF E + E++ + GL R G D R++ +FE+ VI +M Sbjct: 299 MPRFPVPEGE----NEQSWFVKEVEKGLHYRYPGG------IPADVRKQAEFEVGVITQM 348 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNP+ Sbjct: 349 GFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLIFERFLNPE 408 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFD+DF RR EVIRYV KYG ERVA I+T+G+++AK AL+D R L PYS Sbjct: 409 RVSMPDFDVDFDDRRRGEVIRYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPYST 468 Query: 472 VDRLCKLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 +RL K +P D H + ++ RE DP ++ + + +EGL Sbjct: 469 GERLTKAMPPDVMGKGMALTDVHNKEAKRYSEAEELRELIKTDPDSQKVFDTAIGIEGLK 528 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R HAAG+++ PL ++P+ R + +TQF+ E GLIK DFLGL+ LT++ Sbjct: 529 RQWGVHAAGVIMSSDPLIDIIPIMRREQDGQIITQFDYPTCEGLGLIKMDFLGLRNLTII 588 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++ + R +DL + DD +Y LL TLG+FQL+ MR L+ M+PD E Sbjct: 589 SDAIENIKLNRDFDLDLEGLELDDVPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFE 648 Query: 642 DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695 DI A+++LYRPGP+ ++ Y RKN ++I IHP ++ L++ T G+I+YQEQV Sbjct: 649 DISAVLALYRPGPMGVNSHTNYALRKNKLQEITPIHPELEAPLEDILGTTYGLIVYQEQV 708 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M AQ L+G+SL +AD+LRRAMGKK K E+DKQ+ F +G NG S+ ++++L Sbjct: 709 MAAAQKLAGFSLGQADILRRAMGKKKKSELDKQQADFFAGMKTNGYSQAAMDALWKVLES 768 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FADY FNK+H AAY +ISY TA++K HY E++AA +T D+ +K+ + + R+ I Sbjct: 769 FADYAFNKAHTAAYGLISYWTAYLKEHYAAEYMAALLTSVGDDKDKLAIYLNECRRMGIT 828 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874 ++PP VN V+F D I + + AI+ VG + ++ A + F++ D+ +V + Sbjct: 829 VLPPDVNESSVNFTPVDTDIRFGMGAIRNVGANVVQAMVGAREEKGAFENFSDYLLKVPA 888 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N+R +ESL+ AGA D G+ R L+ + +++N ++FA Sbjct: 889 VVCNKRTIESLIKAGAFDSLGHPRRALVAVHEEAIDSVVVLKRNEAVGQFDLFAGFSDEE 948 Query: 935 SDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---A 988 ++ + + E+ +LG Y S HPL + +L + + Sbjct: 949 AEPGFSTDVPDLPEWEKKDKLAFERDMLGLYVSDHPLRGLEGVLSQHAEHTISYLIGEDG 1008 Query: 989 TIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A M+ S ++ G+ + E FF Sbjct: 1009 LSDGAIVTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1053 >gi|308185224|ref|YP_003929357.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180] gi|308061144|gb|ADO03040.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180] Length = 1211 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 371/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLK-G 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A++ + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F +G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2 155] Length = 1184 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 324/1062 (30%), Positives = 515/1062 (48%), Gaps = 41/1062 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AG Sbjct: 8 SSGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFYNSATKAG 67 Query: 67 IQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 I+PIIG + I + + ++ A G + L +L Sbjct: 68 IKPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLS 127 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R+ + E EG+I TG SG + + A + +++ Sbjct: 128 SLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWRE 186 Query: 177 LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 +FG + ++ L H +R ++++ +P +ATN+ +++ E H+ L+ V Sbjct: 187 IFGPENFFLELMDHGLDIERRVREGLLEIGRKLGIPPLATNDCHYVTREAARNHEALLCV 246 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 +S R + D Y +E + D + Sbjct: 247 QTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYADVWEPRD 306 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + ++ + L ++ AGLE R G + ++Y R ++E+ VI F Sbjct: 307 RMPVFPVPEGHDQASWLTHEVKAGLERRFRGGPV-----PEEYTTRAEYEIKVICDKGFP 361 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIVAD I +A+ I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R S Sbjct: 362 SYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPS 421 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472 PD DIDF RR E++RY N++G ERVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 422 APDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQPGFAIA 481 Query: 473 DRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 DR+ K P A + + + + R DP V + E ++ LEGL R Sbjct: 482 DRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGLEGLVR 541 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 +A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 542 NAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIG 601 Query: 584 KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 ++ + RG+ +DL +P DD Y LL+ TLG+FQL+ MR L MQP D Sbjct: 602 DAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFND 661 Query: 643 IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696 I+A+++LYRPGP+ Y +RKNG++ I IHP ++ LK+ T G+I+YQEQ+M Sbjct: 662 IVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIM 721 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + F Sbjct: 722 FIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPF 781 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I + Sbjct: 782 AGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITV 841 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875 +PP VN +F + I + L AI+ VG +++ F D+ +++D Sbjct: 842 LPPDVNESEHNFASVGDDIRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYLNKIDIT 901 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 N++V ESL+ AGA D G+ R L + +K ++F + T + Sbjct: 902 ACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGEDTGT 961 Query: 936 DKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991 D + K + E+ +LG Y SGHPL+ +L + Sbjct: 962 DAVFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVAN 1021 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + ++ S ++ + G + E FFP Sbjct: 1022 DAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1063 >gi|260772237|ref|ZP_05881153.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260611376|gb|EEX36579.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 1109 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 399/997 (40%), Positives = 577/997 (57%), Gaps = 37/997 (3%) Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 ++F A + GI+PIIG + + + I +L GY+ L L Sbjct: 1 MKFYGTAHSCGIKPIIGADFTL----------RSDEFADELTKITILAKNNIGYKNLTLL 50 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +S YL + I WL + EGLI+L+GG +G I RA + +AEK + ++ Sbjct: 51 ISEAYLRGHVQHQPVIDKQWLVK-HAEGLIILSGGKNGEIGRALLKGNQALAEKCVEFYQ 109 Query: 176 KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 F D Y+ L R D + LA +LP+VATN +FL+ E ++AH++ +A+ Sbjct: 110 TYFADHFYLELVRTGRADEESYLHFALDLAEQTQLPVVATNEVVFLNAEQFDAHEIRVAI 169 Query: 235 AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + RP+ +P YL+ EM +F+D+P+ALEN+VEIA+RC+ +++ Sbjct: 170 HDGYTLEDPRRPKNYSPQQYLRTEQEMCELFADIPQALENSVEIAKRCNVTVRLGEYF-- 227 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350 E L K+ GLE RL + +Y +RLD EL VI + Sbjct: 228 ---LPNFPTGGLAIEEFLVVKSKQGLEERLEFLFPDPQVRAERRPEYDERLDIELQVINQ 284 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP Sbjct: 285 MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 344 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DFC D+RD+VI +V YG + V+QIITFG++ AKA +RDVGR L P+ Sbjct: 345 ERVSMPDFDVDFCMDKRDQVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFG 404 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VDR+ KLIP DP + +A + +E AD V L++ + LEG R+A HA Sbjct: 405 FVDRISKLIPPDPGMTLE-KAFKAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAG 463 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI ++ P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L + Sbjct: 464 GVVISPTTITDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLIN 523 Query: 591 QRGV-----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 R + + IP D ++ LL T +FQLES GM++ ++ ++PDC EDIIA Sbjct: 524 PRRTALGEEPLRIEAIPLQDEASFRLLQKSETTAVFQLESRGMKELIKRLKPDCFEDIIA 583 Query: 646 LVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQI 698 LV+L+RPGP+ + +V + +RK+G+E I H + +L+ T G+I+YQEQVMQI Sbjct: 584 LVALFRPGPLQSGMVDNFIDRKHGREVISYPDEKWQHESLKEILEPTYGIILYQEQVMQI 643 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 AQ+L+GY+L AD+LRRAMGKK EEM KQ+ F GA NG+ +A+ IF+L+ KFA Sbjct: 644 AQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAIFKEGAENNGVDGELAMKIFDLVEKFAG 703 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 YGFNKSH+AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+ + ++ + ++P Sbjct: 704 YGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECQRMGLTVLP 763 Query: 819 PSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876 P +N+ F V + I Y + AIKGVG I+++ + F L DFC+R+D KK Sbjct: 764 PDINSGLYSFNVDENGAIVYGIGAIKGVGEGPIEAILDSRSKNGYFKDLFDFCARIDLKK 823 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +N+RV+E L+ AGALD G R ++ SLD+ K A + ++F + Sbjct: 824 VNKRVIEKLILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEE 883 Query: 937 -KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 + + V E E+ LG Y +GHP++ Y L K E+ T R ++ Sbjct: 884 VEQKYTQVPPWPEKVWLEGERETLGLYLTGHPINQYLKELPKYTSCRLNEATPTRRDQSL 943 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA +V++ + T++GSRIG +T + + E + Sbjct: 944 TLAGLVIAARVMTTKRGSRIGLMTLDDRSGRIEVMLY 980 >gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 1135 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 391/1025 (38%), Positives = 577/1025 (56%), Gaps = 43/1025 (4%) Query: 33 LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92 + ++A PA+A+TD +N + ++ + A +AG+QPI G L + D+ + + Sbjct: 1 MSRVAELGMPAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADDPEKS------ 54 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 + LL GY L L+SR Y Q + +WL+E EG+I L+ G+ Sbjct: 55 ----YPLCLLAMNQTGYHNLTLLISRSYTEGQYLGVPYVQKAWLEEC-AEGVIALSAGAR 109 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPL 211 G + +A S++A R + L+ R Y+ L R D V LA + P+ Sbjct: 110 GDVGQAIIGEKSELAVARAKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPV 169 Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270 VATN+ FL ++EAH+ + + + R R T YL++ EM +F+D+PEA Sbjct: 170 VATNDVRFLDASEFEAHEARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEA 229 Query: 271 LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL----EVRLAQG 326 L NTV+IARRC+ +L++ P LP + E + R + GL E Sbjct: 230 LANTVQIARRCNVVLELGKPYLPDYPVPEGM----TMDEFFRQLSHDGLDARLEALFDSS 285 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 A + YR+RL+FEL I +M F GYFLIV DFI+WAK+++IPVGPGRGSGAGS+ Sbjct: 286 ADDFPAKQKQYRERLEFELETIIQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLV 345 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI YV + YG E V+QI Sbjct: 346 AYAMEITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQI 405 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506 ITFG++ AKA +RDV R Y D+L KLIP + + +A+ + +E D Sbjct: 406 ITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KALEQEEALKEFLAEDE 464 Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566 + +++++LEG+ R HA G+VI L+ P++ D VTQ++ +E A Sbjct: 465 QAQEIWDMAEQLEGVTRGVGKHAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDA 524 Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621 GL+KFDFLGL+TLT++ ++ + +D+ IP DD ++ LL + T +F Sbjct: 525 GLVKFDFLGLRTLTIIDWAVKMINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVF 584 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSI 674 QLESSGM+ +E +QPDC EDI+ALV+L+RPGP+ + +V N Sbjct: 585 QLESSGMKDLIERLQPDCFEDIVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQ 644 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 H + P+L+ T G+I+YQEQVMQIAQ L+GY+L AD+LRRAMGKK EEM KQ+ F Sbjct: 645 HEWLKPILQPTYGIILYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEE 704 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA G+ +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP F+AA M+ Sbjct: 705 GAKSKGVDSELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSS 764 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853 E+DN +KI F + ++ + + P VN F V I Y L AIKG+G I Sbjct: 765 ELDNTDKIVVFVDECKRMKLSLKLPDVNEGQYMFTVNAQGDIIYGLGAIKGLGEGPVEII 824 Query: 854 MEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + D PF L DFC+R D +K+NR+ +E+L+ +GALD G +R L+ S+++ K A Sbjct: 825 LATRETDGPFTDLFDFCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAA 884 Query: 913 QWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + NR +++F E GT K R E+ LG Y +GHP Sbjct: 885 EQSASNRDAGIDDLFGEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHP 944 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 +D Y+ +RK K + +GN + + ++++ + T++G+ + +T + + + Sbjct: 945 IDEYQVEIRKFAPKRIVDVRPDKQGNQLLV-GLIMATRTMNTQRGT-MAVLTLDDSSAQM 1002 Query: 1028 EANFF 1032 E F Sbjct: 1003 EVTLF 1007 >gi|261879187|ref|ZP_06005614.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis DSM 17361] gi|270334182|gb|EFA44968.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis DSM 17361] Length = 1239 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 355/1120 (31%), Positives = 548/1120 (48%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63 FVHL VH+ YS+L+G + ++DK +D +AITD ++ E Sbjct: 3 DFVHLHVHTHYSVLDGQSKVRKLVDKAISDGMKGMAITDHGVMYGIKELFDYCATINKKR 62 Query: 64 -AAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 + G+ +PI+GC++ + + + + +++L +GY+ LI+LVSR Sbjct: 63 ASEGLDPFKPILGCEMYVAHHNKEDKVREDG--DASGYHLIVLAKNYKGYKNLIKLVSRA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 ++ R + L++ EGLI+ + +G + + A + + +LFG Sbjct: 121 WVHG-YYYKPRTDRTDLEKYH-EGLIICSACIAGEVPSKILKGDIEGAREACEWYHRLFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + +V TN+ F ++ E Sbjct: 179 DDFYLELQRHEVKDPSIRANREVFPLQQKANQVMMEFAKEYGIKVVCTNDCHFEDQDTAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ S + R T + K+R EM IFSD+PEAL NTVEI + Sbjct: 239 AHDHLLCLSTSKDLDDPFRLMYTKQEWFKSREEMNEIFSDIPEALRNTVEILDKVELYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 +PI+P F + ++E Sbjct: 299 NSSPIMPYFPIPKEFGTEEELRKKYTEEDLFREFTTDENGQNPLPEEEAHKVIDRLGGYD 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G + + R+ ++FEL+V+ M F GYFLI Sbjct: 359 KIYRIKLEADYLGKLAFDGAKKNYGDPV------PDNVREHINFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFIAAARNELGVWVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+R+V +KYG E A IIT+ S+ K ++ DV R ++P + + L K Sbjct: 473 DTDFDDDGRGKVLRWVMDKYGEENCAHIITYSSMATKNSIADVARVERLPLERANMLKKA 532 Query: 479 IP---NDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP D AI REA DP ++ +++LEG R HA G +I Sbjct: 533 IPDRLPDGKKMNLRNAIEYTPELREAEASTDPRERNTIKYAKQLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ + VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRDPIDEWVPVSTADDPDFPELKCAVTQYDGHVIEDTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + RGVKVD+ IP DD TY L T+G FQ ES GM++ L + P ED+IA+ + Sbjct: 653 ERTRGVKVDIDKIPIDDELTYKLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVTYDIPCMEQYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D+ K +F+ NG K + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDQMKPKFLKQGMANGHDKNVLEKIWNDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT ++ +I K ++ + +I + P VN V+F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFADIGEITKLMEECKAMDIPTLGPDVNESYVEF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+G+ A I++ + P+ + DF RV + +NR+ +ESL Sbjct: 893 GVNKKGEIRFGLSAIKGMGSGAADAIVKERQKNGPYKDIYDFVGRVSLRDINRKAMESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKI 938 +G DCFG R Q +Q LD++ ++ Q ++++ ++F Sbjct: 953 LSGGFDCFGLMREQYMQVNAKGDVFLDSLVRFGQQYQQDKMESANSLFGGMVSEIAIATP 1012 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------G 992 K ++ + E+ ++G Y S HPLD Y +L + E+ Sbjct: 1013 PAPKAEEWSAIEKLGKEKELVGIYLSAHPLDDYILVLDNLCNTSCTEAGNRENYAELSMR 1072 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +V Q+ ++G G VT + E F Sbjct: 1073 QEVTFGGIVTKVTQRFNKRGEPFGIVTIEDFGGPGEIALF 1112 >gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957] gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957] Length = 1176 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 405/1064 (38%), Positives = 605/1064 (56%), Gaps = 55/1064 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL++HS YS+++G + L+ + AAD A+A+TD N F + F ++A G Sbjct: 2 NPPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++P++G + I D ++LLV +GY L L++R +L +Q + Sbjct: 62 VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E GL+ L+G G + A + +A K + ++F Sbjct: 112 GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171 Query: 181 RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ LQR Q V+LA + +LP+VAT+ F++++D+ AH+ + +A + Sbjct: 172 AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231 Query: 240 VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y K + EM ++F+D+P AL NTV+IA+RC+ L++ P LP F Sbjct: 232 LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + ++ L + A GLE R+ A + +Y RL+FE I +M F G Sbjct: 292 DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM Sbjct: 348 YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFCQ RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD + Sbjct: 408 PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467 Query: 476 CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++I Sbjct: 468 AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527 Query: 535 GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590 L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 528 APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + S IP D + +L T+ +FQLES GM+ L+ +PD EDIIALV+LY Sbjct: 588 PSKADWNCSHIPLTDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL A Sbjct: 648 RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + +E F GA+K+G+S A IF+L+ KFA YGFNKSHAAAYA Sbjct: 708 DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829 +++Y TAW+K H+P EF+AA+M+L MD+ +K+K DA + ++++PP +N F Sbjct: 768 LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV A Sbjct: 828 PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946 GA D +R QLL S+ +K ++F G +++ L + Sbjct: 888 GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990 + + + E++ LGFY SGH D + +R+ + + Sbjct: 946 TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSR 1005 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N ++ ++V + + T++G + V + ++ E F Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048 >gi|255319195|ref|ZP_05360412.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82] gi|262379698|ref|ZP_06072854.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164] gi|255303588|gb|EET82788.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82] gi|262299155|gb|EEY87068.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164] Length = 1188 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 382/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F K GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRVPDLVKAAQKDEMPALALTDLSNLHAAVKFYGKCLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ + LL T G++ L ELVS Y+ Q Sbjct: 63 LGSEIRLNDAEH---------------RMTLLAMTNTGWRNLTELVSEGYIRGQQLDIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + W+ + + LI L G + + + ++ Q AE L + FG+R+Y+ L R + Sbjct: 108 VQKEWILDQNQD-LIALLG-MNSDVGKMLITSNPQKAEPLLEEWIAKFGNRVYLALTRTN 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA + + +VA N+ F++ +D+EAH+ + +A V+ RP+ Sbjct: 166 RPGEDDFIIEAVKLAQKYNIGVVAHNDVHFMTRDDFEAHEARVCIADGYVLGDNRRPKTY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K+ EM +FSD+P A+ENT IA+RC+ LQ+ LP + E + Sbjct: 226 SPEQYFKSSEEMTELFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEG----YTID 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + Y +R+++E+N+I M F GYFLIV D Sbjct: 282 TFFAHLSKEGLEERLNFLYPPEERDEYWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ KLIP Sbjct: 402 CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLIPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P +++ + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGLSLEESLQAEPQLKDIVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 522 KITDFSAVMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIKSDK 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP +D + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLDIAAIPLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ FI GA+K I + A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833 QTAW+K HYP EFLAA M+ EM N + + D R+ N++++PPSVN F + + Sbjct: 761 QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSIYQFHAIDEK 820 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEAAMQSVIDSRNQQGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A +NR ++F + + + + VR Sbjct: 881 CLGIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVE--EIQRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP++VY+P L+ E T RG A +V+ R Sbjct: 939 KGEKDTLGLYLTGHPINVYRPELKSFVPSRLNELTPTRRGVTTVFAGLVIDVANFPNR-- 996 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +T + E + Sbjct: 997 ---VMITLDDGTARVEVSC 1012 >gi|317182665|dbj|BAJ60449.1| DNA polymerase III subunit alpha [Helicobacter pylori F57] Length = 1211 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 371/1078 (34%), Positives = 581/1078 (53%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDDQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+ A +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMVAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|222823894|ref|YP_002575468.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100] gi|222539116|gb|ACM64217.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100] Length = 1197 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 370/1061 (34%), Positives = 582/1061 (54%), Gaps = 52/1061 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + A ++A+TD N+F A++F + A GI+PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D++ + L GY+ L+ L S+ Y+ R Sbjct: 64 IGLEAYLHNHDDI-----SDKSSRQRFHLCLFAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L E ++GLI + G I+ + A++ L +KK+FGD Sbjct: 118 INKKLL-EAHSDGLICSSACLQGEINWHLNTKNERNIKFGAKGYEGAKEAALWYKKVFGD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH D+ + +++LA ++ ++ATN++ + +E AH+V M +A Sbjct: 177 DFYLEIMRHGIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGVK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + R R + Y+K +M +F+D+PEA+ENT EIA +C+ L++ Sbjct: 237 LDDPGRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGD-----PTPP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342 ++ + N A E I Y Q+Y+ RLD Sbjct: 292 NFKFTREYAKKYSLNLAQEDQEFSFDNDDIVFEYLCKKGLEERLQFIDESKHQEYKDRLD 351 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+++I MKFSGY LIV DFI AK+ +IPVGPGRGS AGS+ +Y L ITD+DP+ ++L Sbjct: 352 LEISIIKNMKFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNL 411 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG E+VAQ+ITFG L AK +RDV Sbjct: 412 LFERFLNPERVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVA 471 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 R M D L KL+P + + +A + + E + P ++ + ++ LEGL Sbjct: 472 RVCDMSIPDADALAKLVPEELKITLE-KAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLN 530 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+A HAAG+VI + L P++R ++D VTQ++ +++E LIKFDFLGLKTLT Sbjct: 531 RNAGLHAAGVVISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLT 590 Query: 581 LLQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ Sbjct: 591 VIDNAIKLVKKRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPER 650 Query: 640 IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 ED+IA+++LYRPGP+D+ + + + K+G++ + P+L+ T GVI+YQEQVMQ Sbjct: 651 FEDLIAVLALYRPGPLDSGMVDDFIDIKHGRKAATYAFDDLKPILENTYGVIVYQEQVMQ 710 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I Q + G+SL AD +RRAMGKK +E +D K ++ GA K G + A ++FEL+ KFA Sbjct: 711 IVQKIGGFSLGGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFA 770 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 +YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E NV+K+ K+ ++ ++ NI+++ Sbjct: 771 EYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLL 830 Query: 818 PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 PPSVN +F G I Y L AIK VG +IM ++ F +DF S + Sbjct: 831 PPSVNKAQREFSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSI 890 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D K+N++ +E+L +GA D FGY+R L+ +L+ I + ++ + + + N ++F E+ Sbjct: 891 DPTKINKKTIENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEI 950 Query: 933 TFSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 K+ L + E+ +LG Y SGHPLD + + + + Sbjct: 951 AADIKVGLHDSKVEFELMEKLGYEKEILGIYVSGHPLDKFASQIEGIDYFKSMDFETLKG 1010 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + + ++ G R + ++ F Sbjct: 1011 EGELLVVGKIEDFKSMMSKSGKRYAKAVVLDFYSSFDMIIF 1051 >gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170] gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170] Length = 1478 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 340/1102 (30%), Positives = 539/1102 (48%), Gaps = 95/1102 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58 F HL H+ +S+L+ +S+ +++ + PA+A+TD N+ A F Sbjct: 261 FAHLHNHTQFSILQSTISVADLVQATVKNNMPAVAMTDHANMMGAFHFVNGVINHNKGVI 320 Query: 59 ---------SQKAC-----------------AAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92 + I PI+GC+ + + KT Sbjct: 321 SRNEEKQKRYEATQNGTLEEGQEPLEELPTLEKEITPIVGCEFQVCED------HTDKTQ 374 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 IV+L GY L ++ S + +D RI +++ E +I+LTG Sbjct: 375 KDNGYQIVMLAKNKNGYHNLAKMSSIAF-VDGKYYVPRIDKRIIEQY-KEDVIVLTGNLY 432 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211 G + + AE L+ +K+ FGD LY+ L RH D R +Q ++Q A + + L Sbjct: 433 GEVPSKVLNVGEKQAEDALIWWKETFGDDLYIELMRHNQEDETRVNQVLIQFAKKYNIKL 492 Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIF 264 +A+NN+ + +E+ AHD+L+ V + ++Y K+ EM +F Sbjct: 493 IASNNTYYTEKENANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKELF 552 Query: 265 SDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 D+PEA+ N E+ + P +F E D ++ E LR+ Sbjct: 553 KDIPEAITNIQEVIDKVETYTLARDVLLPAFDIPKEFQFEEDRADGGKRGENKYLRHITY 612 Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 G + + +RLDFEL VI + GYFLIV DFI+ A+ N+ VGP Sbjct: 613 EGAKK-------RYEEITPEIDERLDFELKVIENTGYPGYFLIVEDFIRAARDMNVSVGP 665 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV + Sbjct: 666 GRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYVID 725 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA------------ 484 KYG +VAQIIT+G++ AK+++RD RAL +P DR+ KLIPN Sbjct: 726 KYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVDDAVL 785 Query: 485 -HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + + + L + LEG R+ HA G++I +++ V Sbjct: 786 KSKFNSEELLKVNELLNIAEGEGLESETLNQAYVLEGSVRNTGIHACGVIITPDDITKFV 845 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602 P+ S++ TQF+ +E AGL+K DFLGLKTLTL++ ++ + + G+++D P Sbjct: 846 PVALAKDSEMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGIELDPENFP 905 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP++ I + Sbjct: 906 LDDEKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIPSFI 965 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E+IV + L ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K Sbjct: 966 ARKHGTEEIVYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQK 1025 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +DK K +FI AS G + I++ FA Y FNKSH+ YA I+YQTA+ K H Sbjct: 1026 HVLDKMKPKFIEKASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAH 1085 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841 YP E++AA ++ M++++++ F ++ ++ ++++ P VN F V +N + + + A Sbjct: 1086 YPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQNNAVRFGMGA 1145 Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRM 899 IKGVG I+E + P+ S+ D R+D + N++ ESL AG D FG R Sbjct: 1146 IKGVGRGAVETIVENRKEEGPYKSVFDMAKRIDLRASNKKAFESLAVAGGFDSFGATHRA 1205 Query: 900 QLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 Q + L+ + K ++N+ + ++F + + + + Sbjct: 1206 QYFHTEGDGVTFLEKVIKSGSKYQENKNSSQMDMFGGMSEAQIPEPVVPPCEEWGTMEKL 1265 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTR 1010 E+ V+G Y SGHPLD +K + + I A ++ Q + + Sbjct: 1266 RREKEVVGIYISGHPLDDFKSEINAFTNGTISCFTDLPKYVNREISFAGVITDVQHRIAK 1325 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G T + +E F Sbjct: 1326 NGKGWALFTLEDYMDTFEFRIF 1347 >gi|317181143|dbj|BAJ58929.1| DNA polymerase III subunit alpha [Helicobacter pylori F32] Length = 1211 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ ++ A+K + Sbjct: 115 FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKSTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L AIKGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F G +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|294055954|ref|YP_003549612.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM 45221] gi|293615287|gb|ADE55442.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM 45221] Length = 1243 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 371/1096 (33%), Positives = 569/1096 (51%), Gaps = 73/1096 (6%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + FVHL VH+ +SLL+G ++ + + A A++ITD L+ F ++A Sbjct: 1 MPEKDREFVHLHVHTDHSLLDGCSRVDRLCSRAAELGMKALSITDHGVLYGLTSFFKQAE 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 GI+P++GC++ + ++ L N+ + + + LL GYQ L ++VS+ + Sbjct: 61 KHGIKPLLGCEIYLVYEEKLAEVNELRAKQKSR-HMGLLARNFTGYQNLCKIVSKAHTQG 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 ++ R L L +EGLI +G + I + + + A + F +FG + Sbjct: 120 -FYRNPRTDLETLAA-HSEGLIGFSGCLAAVIPQYLLEDKFEEAREAAAKFIDIFGKEFF 177 Query: 184 V-NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + L H ++ ++++A +L +VATN+ ++++ D++ HD ++ + V+ Sbjct: 178 IIELMDHGIPEQRKIIPGLLKIATEFDLKVVATNDVHYVNDADWQPHDSMLCIQTGAKVA 237 Query: 242 QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R R YLK+R EM F ++PEA+ NT IA C L P + Sbjct: 238 DEKRMRYDAQQFYLKSREEMDLAFKEVPEAITNTSGIAEMCEVKLPFGVDHYPVYERPIE 297 Query: 301 DDIQKEEEN---------------------------------------ELRNKAVAGLEV 321 D + EN L AGL Sbjct: 298 IDSGSDHENFERVLDIYVEKKNEILVRDGKDPIELNAETRAKHKSNGLYLFELCKAGLNE 357 Query: 322 RLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374 R A Y ++L++EL +IA F YFLIV DFI WA++++IPV Sbjct: 358 RYGTNYDACRADWDNSSEADKRYCEQLEYELAIIAGTGFVDYFLIVWDFINWAREHDIPV 417 Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434 GPGRGSGAG + AY L ITDIDPL F LLFER LN +R+S PDFD+DFC RRD V+ YV Sbjct: 418 GPGRGSGAGCLVAYVLKITDIDPLSFGLLFERMLNLERVSPPDFDVDFCMRRRDLVVNYV 477 Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494 ++KYG +RVA IITFG+ AK +RD+ R + +S+ ++L K+IP++ + ++ Sbjct: 478 RDKYGKDRVANIITFGTFGAKMVVRDLARVNDIEFSEANKLAKMIPDELNISLD-DSVKK 536 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 ++ +P ++E + +EG+ R+ HA G++I D+ ++ L+P+ + Sbjct: 537 SPELQQELKVNPVAQTIIEQGRVIEGMVRNTGKHACGVIIADQDITNLIPVTL--QEGDL 594 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLL 612 TQ+ E GL+K DFLGLKTLT++ + + +R D+ + D TY LL Sbjct: 595 TTQYPKGPSEDLGLLKMDFLGLKTLTVIDDAQTNVRNTRRMPDFDIEKVSLKDQPTYDLL 654 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 + T +FQLES GM+Q + E+IIAL++LYRPGP+ I + K + Sbjct: 655 NSGRTTAVFQLESGGMQQLCRQIGLSSFEEIIALIALYRPGPMQFIPQFIEGKKDPSTVQ 714 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 HPL+ +++ET GV++YQEQVMQ AQ+++GY+L AD+LRRAMGKKIKE MD QK+ F Sbjct: 715 IPHPLLKDLVQETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQKQVF 774 Query: 733 ISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 I GA N I + A +IF LL KFA YGFNKSH+AAYA++SY+TA++K +YPVEF+AA Sbjct: 775 IDGAKATNNIDRKTAESIFALLEKFAQYGFNKSHSAAYAMLSYRTAFLKANYPVEFMAAV 834 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGT 847 +T E N +K+ F ++ N+ ++ P VN F ++ I + +AAIKGVG Sbjct: 835 LTSEQGNADKLSNFLEECNAMNVPVLSPDVNASGATFTPIINGDESSIRFGMAAIKGVGE 894 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A I+E D P++S DF +R K +NRRV+E+L+ GA D G+ R LL LD Sbjct: 895 GAALVIIEERDKDGPYESFTDFITRSSDKAVNRRVIEALIKTGAFDSLGHDRAHLLHDLD 954 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENSSVRFENEQRVLG 960 A K+R ++F K + + ++E+ +LG Sbjct: 955 AELAEADSRRKDREAGQASLFDMLGNDAGIAEEDQTRKTPPKIPEMPMAEKLQHEKDLLG 1014 Query: 961 FYFSGHPLDVYKPI-LRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSR-IGW 1017 FY SGHP+D Y + + + ++ RL +V + Q K TRK SR + Sbjct: 1015 FYISGHPMDAYAGLDMAIDSFQNADDLKRNFDDRQTYRLGGIVSNLQIKYTRKDSRQMAV 1074 Query: 1018 VTFSEPAKEYEANFFP 1033 + + YE FP Sbjct: 1075 FNVATRTQNYELIMFP 1090 >gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17] gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17] Length = 1240 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 358/1120 (31%), Positives = 541/1120 (48%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G + N++ K D +A+TD +F EF+ Sbjct: 3 DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G +PI GC++ + + + +++L GY+ LI+LVSR Sbjct: 63 KKEGKEPFKPIFGCEMYVARHRKEDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G + A + + ++FG Sbjct: 121 W-VDGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + L+ TN+ F +E E Sbjct: 179 DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ ++ +R R + + K++ EM IFSD+P+AL NT+EI + F Sbjct: 239 AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298 Query: 287 VHAPILPRFIEKECDDIQ------------------------------------------ 304 H PI+P F E + Sbjct: 299 EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358 Query: 305 -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K E + L A G + +++ ++ +DFEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLGKLAYDGAKKLYGDPL------SEEVKEHIDFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532 Query: 479 IP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP D A AI +EA D ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP EF+AA MT + +I K ++ + NI + P VN F Sbjct: 833 YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+GT A I+ E + P+ + DF RVD +NR+ ESL Sbjct: 893 GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D FG R Q + LD++ +Y Q + ++ ++F Sbjct: 953 LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993 + K V ++ + E+ ++G Y S HPLD Y IL+ + + A Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072 Query: 994 NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + K G+VT + E F Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDAPGELALF 1112 >gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2] gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1268 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 361/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRLCKL+P+ AIA + A + DP + Sbjct: 538 MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R ++VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNIEVDVDAIDISDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +F+ G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IM E + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRQNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149] Length = 1138 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 480/1029 (46%), Positives = 652/1029 (63%), Gaps = 55/1029 (5%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+A+TD NN+F+ALEFS AG+QPI+GCQ+D+ +T Q +V Sbjct: 1 MPALALTDKNNMFAALEFSVAMSGAGVQPILGCQVDVAY-----VTAQPGEKERAPAPVV 55 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LL GY+ L+ L S +Y+ D+G ++ LS L EI +G+I LTGG GP+ + Sbjct: 56 LLAQNETGYENLMRLNSCLYI-DKGGALPQVTLSEL-EINADGIICLTGGPDGPVGQLLQ 113 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214 A+ + K F DRLYV LQRH G +R E V++AY +LPLVAT Sbjct: 114 LGQMPAAQALMDRLKAAFQDRLYVELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVAT 173 Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273 N+ F + YEAHD L+ +A Q DR R+T HY K++SEM+++F+DLPEA+EN Sbjct: 174 NDVYFPKSDMYEAHDALICIAEGAYVDQQDDRRRLTNQHYFKSQSEMIALFADLPEAIEN 233 Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 TVEIA+RC+F + +E ELR +A AGL+ RL I Sbjct: 234 TVEIAKRCAF--------QAYRRDPILPKFADDEVEELRKQAHAGLKARLE--VIPHATS 283 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +DY +RLDFEL +I M F GYFLIVADFI+WAK+ IPVGPGRGSGAGS+ AYALT+T Sbjct: 284 VEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVT 343 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPLR++LLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L Sbjct: 344 DLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512 +KAA+RD+GR LQMPY QVDRL K+IP + PVS++ +AD+ R RE + V RLL Sbjct: 404 SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLL 463 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 Q++EGL R+ASTHAAG+VIGDRPL LVP+Y+D RS++P TQFNMKW+E+AGL+KFD Sbjct: 464 NYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFD 523 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDL------------------SLIPFDDHETYHLLTT 614 FLGLKTLT++Q +++ + G + + + IP DD +Y L + Sbjct: 524 FLGLKTLTVIQNAVEQIMASGRPLHIAADGTELYAPAAGTENDINAIPLDDERSYKLYAS 583 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP++NI Y KNG + SI Sbjct: 584 AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRALESI 643 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 HPLID +L+ETQG+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKKI EEM K++ +F Sbjct: 644 HPLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEK 703 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA NG+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M Sbjct: 704 GAVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763 Query: 795 EMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 ++ +K+ + ++ R + + +PP VN FKV + + Y+L A+K VG + I Sbjct: 764 DIHLTDKLAIYFEEVRKRLELPWVPPCVNRSAATFKVEEGALIYALGALKNVGVEAMKLI 823 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 E DKPF +L D RVD K++ +R LE L +GA D +R ++ +LD + Y+ Sbjct: 824 TEGRGDKPFATLFDLARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSA 883 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + + ++F E G + L + R E + +GFY SGHPLD Y Sbjct: 884 AIHEQKASNQVSLFG-EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMG 942 Query: 974 ILRKMG-------IKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 L++ +E + N RLA +V +Q++K+ +G+R + S+P Sbjct: 943 QLKRKWGNDRGVPFMTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDP 1002 Query: 1024 AKEYEANFF 1032 YE F Sbjct: 1003 TGAYEVTLF 1011 >gi|32266769|ref|NP_860801.1| DNA polymerase III subunit alpha [Helicobacter hepaticus ATCC 51449] gi|32262821|gb|AAP77867.1| DNA-dependent DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 1218 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 394/1084 (36%), Positives = 596/1084 (54%), Gaps = 71/1084 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL +H+ YSLL+GA + + +I ++AITD N+F AL+F G+ P Sbjct: 2 SFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLNP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + D L G + L GY+ L+ L S+ ++ + Sbjct: 62 IIGMEAYLHNGDTL-----GDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFI-EGFYYYP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFG 179 RI + L+E +EGL+ + G I+ +VA++ L +K +FG Sbjct: 116 RINKALLRER-SEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFG 174 Query: 180 DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 + Y+ L RH D+ + Q+++L ++ ++ATN++ + +ED A +V M VA Sbjct: 175 EDFYLELMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGK 234 Query: 239 VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP---- 293 + KDR + + + Y+K+ EM +F D+PE LENT EIA++C L + + Sbjct: 235 TFNDKDRLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHT 294 Query: 294 -----RFIEKECDDIQKEEENELRN---------------------KAVAGLEVRLAQGA 327 + + L+ K GLE RL Sbjct: 295 GEILLKNTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKHIP 354 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 Y++RL+ E+ VI+ MKF GY LIV DF+ +AK+NNIPVGPGRGS AGS+ A Sbjct: 355 T---ESHPIYKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVA 411 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y+L IT+IDPL++ LLFERFLNP+R+SMPD D+DFCQ RR E+I YV N YG VAQ+I Sbjct: 412 YSLKITNIDPLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVI 471 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSR 497 TFGSL AK +RDV R L MPY+ D KLIP + ++ +SR Sbjct: 472 TFGSLLAKGVIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESR 531 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556 +E P ++ + + LEGL R+A THAA IVI L VP+Y + + + T Sbjct: 532 IKELVEKSPLAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVAT 591 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615 Q++M W+E LIKFDFLGLKTLT++ +++ + +R ++D S + DD++ Y + + Sbjct: 592 QYSMNWLEPVDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSG 651 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675 TLG+FQ+ES GM+ + ++P ED++A++SLYRPGP+D I + RK+G KI + Sbjct: 652 NTLGLFQIESEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLI 711 Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 ++P+LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM + K+ F G Sbjct: 712 DALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADG 771 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 A K G ++ A +++E++ KFA YGFNKSHAAAY +I+YQTA++KT+Y EF+AA +T E Sbjct: 772 AQKQGYNRAKAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSE 831 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTAR 851 + +E I K+ + + I+I+PP VN +F VG+ +I + L+AIKG+G Sbjct: 832 TNKIESIAKYIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIE 891 Query: 852 HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 +I+E + + SLEDF +RVD KL +R LE L+ +G LD GYSR +L+ +D + Sbjct: 892 NIIEEREKNGAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCD 951 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 + K + H ++F ++ + + + + + E +G Y SGHPLD Sbjct: 952 KGREKSKAQEMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDD 1011 Query: 971 YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028 +K L+ + GI E + L V+S +++ ++K G + F + + E Sbjct: 1012 FKDKLKNIKGIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGKIE 1071 Query: 1029 ANFF 1032 F Sbjct: 1072 IMVF 1075 >gi|215403402|ref|ZP_03415583.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987] Length = 1184 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 331/1069 (30%), Positives = 526/1069 (49%), Gaps = 47/1069 (4%) Query: 5 LEKSP---SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + S SFVHL H+ YS+L+GA + +L ++ PA+ +TD N+F A EF Sbjct: 1 MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60 Query: 62 ACAAGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQR 111 A AGI+PIIG + I + + + ++ A G + Sbjct: 61 ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S Q + R+ + E EG+I+ TG SG + + A + Sbjct: 121 LFKLSSHASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAA 179 Query: 172 LTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++++ G D ++ L H +R ++++ +P +ATN+ +++ + H+ Sbjct: 180 AKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHE 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 L+ V +S +R + D Y + + D + Sbjct: 240 ALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADV 299 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + ++ + LR++ AGL R G YR+R +E++VI Sbjct: 300 WTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAG------PPDGYRERAAYEIDVIC 353 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIVAD I +A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLN Sbjct: 354 SKGFPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLN 413 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467 P+R SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q Sbjct: 414 PERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQP 473 Query: 468 PYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKL 518 ++ DR+ K P A + S + + + R DP V + + ++ L Sbjct: 474 GFAIADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGL 533 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EGL R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ Sbjct: 534 EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRN 593 Query: 579 LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 LT++ ++D + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 594 LTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQP 653 Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691 ED++A+++LYRPGP+ Y +RKN ++ I IHP ++ L ET G+I+Y Sbjct: 654 TGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVY 713 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++ Sbjct: 714 QEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWD 773 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ Sbjct: 774 TILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 833 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 I ++PP VN ++F I Y L A++ VG +++ D F D+ + Sbjct: 834 LGITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLN 893 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-H 929 ++D N++V ESL+ AGA D G++R L + +K ++F + Sbjct: 894 KIDILACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSN 953 Query: 930 EKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + GT + + E+ +LG Y SGHPL+ +L Sbjct: 954 DDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAI 1013 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + +R+ ++ S ++ + G + E FFP Sbjct: 1014 LDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062 >gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis ATCC 51599] gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis ATCC 51599] Length = 1203 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 395/1047 (37%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL++ S YS+++ + L+ + AD Q A+A++D +NLF ++F ++A G+Q Sbjct: 43 PGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGKGLQ 102 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI + I +N ++L+ + GY+RL EL+SR +L ++ K Sbjct: 103 PICAADVWITNAENRDRP----------YRLLLIAANNAGYRRLCELLSRAWLENEYKGH 152 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + WL T GLI L+G G + + + A + + F D Y+ +QR Sbjct: 153 AELLPEWLTAETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLEVQR 212 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246 + ++ +LA +LPLVAT+ FL EED+ AH+ + +A V++ R Sbjct: 213 DGTPEAESCTRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLADPKRVR 272 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R P Y + R+EM+++F+DLP AL N+VEIARRC+ L++ P LP + E I Sbjct: 273 RFQPTQYFRTRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEGVSI--- 329 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363 E L ++A GL RL + AQ +Y RL E I +M F GYFLIVADF Sbjct: 330 -EEYLVHQAEDGLAKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYFLIVADF 388 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I WAK+N +PVGPGRGSGAGS+ A++L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC Sbjct: 389 IVWAKQNGVPVGPGRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPDFDIDFC 448 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QD R +VI YV+ KYG++ V+QI TFG++ +KA +RD GR L MPY+ D+L KLIP + Sbjct: 449 QDNRGKVIEYVRRKYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSKLIPIEQ 508 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A P+S +A+ + + E + V L +++ LE + R+ HA G++I L+ Sbjct: 509 AKPLSLDKALKAEPQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAPGKLTDF 568 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597 P+YR +D V+Q++ +E GL+KFDFLGL+ LT++ ++ ++ +R VD Sbjct: 569 CPLYRAPGTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRAREGQEPVD 628 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L + FDD Y +L T+ IFQ+ES GM++ L +QPD EDIIA+++LYRPGP+ + Sbjct: 629 LDNLGFDDQAAYQILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYRPGPLGS 688 Query: 658 IVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V + + + I HP + L+ T GVI+YQEQVMQI+Q+++GY+L AD+LRR Sbjct: 689 GMVDDFILRKRGEQAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGGADLLRR 748 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ++ F+ GA+ G +A +F+L+ KFA+YGFNKSH AAYAV++YQ Sbjct: 749 AMGKKKAEEMAKQRKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAYAVVTYQ 808 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+++ +MD+ +K++ F +DA+ +++ PP +N F+ Sbjct: 809 TAWLKAHYPAEFMAATLSSDMDDTDKVQIFVRDAQANQVEVQPPDINASAYRFEPAAPRA 868 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L +KGVG + +++ A A PF L DFC R+D K +NRR +E+LV AGA D Sbjct: 869 IRYGLGGVKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVRAGAFDR 928 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSV 950 R +LL ++ + A+ + + +F +D+ ++ + Sbjct: 929 LDPDRARLLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGTDEAPAREWLPAERWDDRQ 988 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQ 1006 R E+ LG++ +GH D + +R+ + + + +A +V Sbjct: 989 RLLEEKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAGIVSGLST 1048 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 TR+G + V + + E FP Sbjct: 1049 AMTRRGK-MVRVMLDDGSGTEEIAVFP 1074 >gi|239978950|ref|ZP_04701474.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] gi|291450830|ref|ZP_06590220.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] gi|291353779|gb|EFE80681.1| DNA polymerase III subunit alpha [Streptomyces albus J1074] Length = 1182 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 336/1066 (31%), Positives = 529/1066 (49%), Gaps = 46/1066 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P F HL VH+ YSLL+GA L ++ D IA++D NL A +F A A Sbjct: 4 TSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAEKA 63 Query: 66 GIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G+ PIIG + + + + + + + G L L Sbjct: 64 GVTPIIGIEAYVAPESRRTKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFRL 123 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Y ++ R+ + + +EGLI TG SG + + A + ++ Sbjct: 124 SSDAYSEGWLQKWPRMDKESISQW-SEGLIASTGCPSGEVQTRLRLGQEEEALRAAAEYQ 182 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG DR ++ L H +R ++ + +P + TN+S + + AHD L+ Sbjct: 183 EIFGKDRYFLELMDHGIEIERRVRQGLLDIGKKLGIPPLVTNDSHYTYSHESVAHDALLC 242 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 + +S DR R Y S D +A + + + Sbjct: 243 IQTGKNLSDPDRFRFDGTGYYLK-STEEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEK 301 Query: 294 RFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 R + + D E + + G+ R G +D +++ ++E++VI +M Sbjct: 302 RDLMPKFDIPDGFTEVTWFQEEVRRGMARRFPAGV------PEDRQRQAEYEMDVIIQMG 355 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+ L+FERFLNP+R Sbjct: 356 FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 415 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD DIDF + RR EVIRYV KYG ++VA I T+G ++AK A++D R L PY+ Sbjct: 416 VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 475 Query: 473 DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 DRL K +P D + ++ R +P V ++++ ++ +EGL R Sbjct: 476 DRLTKAMPADVLGKGIDLDGITNPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLVR 535 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+++ P+ P++ + +TQ++ E GL+K DFLGL+ LT++ Sbjct: 536 QMGVHAAGVIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMD 595 Query: 584 KSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + A +G+ +DL +P DD +T+ LL TLG+FQ + MR L M+PD ED Sbjct: 596 DARKMVEANKGIDLDLLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFED 655 Query: 643 IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696 I A+ +LYRPGP+ Y RKNG+++I IHP ++ LKE T G+I+YQEQV Sbjct: 656 ISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEILGLTYGLIVYQEQVQ 715 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 + AQ+++GYSL EAD+LRR MGKK EE+ K F GA K G S ++++L F Sbjct: 716 KAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDEAIQALWDVLVPF 775 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNK+H++AY +++Y TA++K +YP E++AA +T D+ +K + + R+ I++ Sbjct: 776 AGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIKV 835 Query: 817 MPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDS 874 +PP VN +F D+ I + L A++ VGT I+ A F S D+ ++++ Sbjct: 836 LPPDVNESVHNFAAQSDDVILFGLEAVRNVGTNVVESIIRARKAKGKFSSFPDYLDKIEA 895 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 + N+R ESL+ AGA D G++R L + + V++ ++F Sbjct: 896 QACNKRTTESLIKAGAFDALGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMGDDN 955 Query: 935 SDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987 +D+ + + E+ +LG Y S HPL + +L G + Sbjct: 956 ADEPGFGLDIEFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQLTGG 1015 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ Q+K T++G+ T + A E FFP Sbjct: 1016 DFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1061 >gi|329961868|ref|ZP_08299882.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057] gi|328531308|gb|EGF58152.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057] Length = 1273 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 359/1147 (31%), Positives = 567/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 FVHL VH+ YSLL+G S++ ++DK D IA+TD N+F EF Sbjct: 11 DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 70 Query: 59 ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84 + AGI +P+IGC++ + Sbjct: 71 KGEIKDLKKRIAGIESGEIECEDREAEIAGCRAKIAEAENKLFKPVIGCEMYVA---RRT 127 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVSR + R + L++ EGL Sbjct: 128 MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 185 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + + + AE+ + +K LFGD Y+ LQRH+ Sbjct: 186 IVCSACIGGEVPKKIINDRLEEAEEAVRWYKNLFGDDYYLELQRHKATVQRANHEAYPLQ 245 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + +++++ A + + ++ +N+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 246 QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 305 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K ++EM ++F D+PEAL NT+EI + + HAPI+P F E ++E Sbjct: 306 MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEEFGTEEEYRAKYSE 365 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + Sbjct: 366 KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDP 425 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + + ++RL FEL ++ M F GYFLIV DFI A+ + VGPGRGS AGS Sbjct: 426 L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 479 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V +KYG E+VA Sbjct: 480 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTDKYGQEKVAH 539 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AIA + A Sbjct: 540 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 599 Query: 504 -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 600 SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 659 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + RG+K+D+ I D TY L T Sbjct: 660 EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLKLDIDKISITDPATYKLYCDGRT 719 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 720 IGTFQFESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 779 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI+G Sbjct: 780 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 839 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 840 KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 899 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ I K + + I + P VN + F V + I + L A+KGVG + IME Sbjct: 900 NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 959 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + P+ + DF RV+ N++ +E L AG D F R Q ++ Sbjct: 960 REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEVFIET 1019 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + R E+ ++G Y S HP Sbjct: 1020 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1079 Query: 968 LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y +L + E + G I + +V S ++ ++ G+ G + + Sbjct: 1080 LDEYAVVLEHVCNTRMSEIEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1139 Query: 1026 EYEANFF 1032 E FF Sbjct: 1140 SAEFPFF 1146 >gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4] gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4] Length = 1178 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 314/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SFVHL H+ YS+L+GA + + ++ + A+ +TD N++ A EF A GI Sbjct: 2 ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + + + + ++ A G + L +L S Sbjct: 62 KPIIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + Q + R+ L EG+I TG SG I + A + ++++ Sbjct: 122 LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180 Query: 178 FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 +G D ++ L H +R +++++ T +P +ATN+ +++++ E H+ L+ + Sbjct: 181 WGKDNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y + + D + Sbjct: 241 TGKTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + LR + + GL+ R G ++Y R D+E+ VI M F Sbjct: 301 MPIFPVPEGETQGTWLRKEVMRGLDRRFPSG------PPEEYLARADYEIGVILEMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I A++ I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAA++D R Sbjct: 415 PDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A +S + + R ++P V ++ + ++ LEGL R+ Sbjct: 475 QITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++D + RG+++DL + DD TY LL+ TLG+FQL+ S MR L MQP EDI Sbjct: 595 AIDNIKANRGIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654 Query: 644 IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A+++LYRPGP+ Y +RKNG++++ IHP ++ LK +T G+I+YQEQ+MQ Sbjct: 655 VAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK +++ F G N S+ +++ + FA Sbjct: 715 IAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAA Y ++S+ T ++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876 PP VN V+F I + + A++ VG I++A +K F D+ +++D+ Sbjct: 835 PPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +++V ESL+ AG D G+ R L+ + +K ++F + S Sbjct: 895 CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESI 954 Query: 937 K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + + +S R E+ +LG Y SGHPL+ + +L + Sbjct: 955 ASVFNVKIPE-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIK 1013 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ S ++ + G + E FFP Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056 >gi|257055090|ref|YP_003132922.1| DNA polymerase III subunit alpha [Saccharomonospora viridis DSM 43017] gi|256584962|gb|ACU96095.1| DNA polymerase III, alpha subunit [Saccharomonospora viridis DSM 43017] Length = 1193 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 341/1079 (31%), Positives = 537/1079 (49%), Gaps = 60/1079 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL VH+ YS+L+GA + + ++ + PA+ +TD N++ A +F Q+A Sbjct: 1 MSND-SFVHLHVHTEYSMLDGAAKIAPLFEEASRLGMPAVGMTDHGNMYGADDFYQQAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 AGI+PIIG + + + + + +L A Sbjct: 60 AGIKPIIGIEAYVAPESRFHKKPVFWGNTGQRSTDEFGEGGDVSGGGAYTHMTMLAENAT 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L L S + + + R+ + E EG+I TG SG + A Sbjct: 120 GLRNLFTLSSLASM-EGYYRKPRMDRELIAEY-AEGIIATTGCPSGEVQTRLRLGQKDEA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + ++ +FG + ++ L H +R ++++ L +ATN+S +++++ Sbjct: 178 LQAAADYRDIFGAENFFLELMDHGLAIERSVREGLLEIGKKLGLQPLATNDSHYVTKDQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 E+H L+ V +S R + D Y ++ + + D + Sbjct: 238 ESHSALLCVQSGKTLSDPTRFKFDGDGYYLKSAQEMREYWDTEVPGATDSTLLIAERVQS 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + K EE+ L ++ + GL R G Y +R +FEL Sbjct: 298 YEEVYAHRDRMPKFEVPEGHTEESWLHHEVMRGLRWRFPDG------IPDGYVERAEFEL 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 VIA+ F YFL+VAD I +A+ I VGPGRGS AGS+ AYAL IT++DP+ +LLFE Sbjct: 352 EVIAQKGFPSYFLVVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNLDPIPQNLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R SMPD DIDF RR E++RY KYG +RVAQ+ITFG+++ KAA++D R Sbjct: 412 RFLNPERASMPDIDIDFDDRRRGEMVRYATEKYGADRVAQVITFGTIKTKAAIKDAARVH 471 Query: 466 --QMPYSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEI 514 Q Y+ D++ K P A + + + + R DP V + E Sbjct: 472 FGQPGYAIADKISKALPPPIMAKDIPLSGIVDPEHERYPEAAEVRSLIENDPEVKTIFET 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ PL +P+++ +T ++ E GL+K DFL Sbjct: 532 ARGLEGLIRNAGVHACAVIMSSEPLLGTIPLWQRD-DGAIITGWDYPSCEAIGLLKMDFL 590 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++D + RG ++DL + DD E Y LL TLG+FQL+ MR L Sbjct: 591 GLRNLTVIGDAIDNIRANRGEEIDLDRLGLDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650 Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 MQP EDIIA+++LYRPGP+ Y +RKNG+++I IHP ++ LK+ T G Sbjct: 651 RMQPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNGRQQIKPIHPELEEPLKDILAETYG 710 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQ+MQIAQ ++GYS+ ADVLRRAMGKK KE ++K+ E F +G +NG S Sbjct: 711 LIVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMKENGFSDEAIQ 770 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 +++ + FA Y FNKSHAA Y ++SY TA++K +YP E++AA +T DN +K + Sbjct: 771 ALWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAALLTSVGDNKDKSAVYLS 830 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 + R+ I+++PP VN F + I + L AI+ VG I+ + S Sbjct: 831 ECRRLGIRVLPPDVNESGRRFAAVGDDIRFGLGAIRNVGANVVDSIIATREKKGKYTSFT 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF + N+RV+ESL+ AGA D FG++R+ +++ ++ +++ ++ Sbjct: 891 DFLDSSELVVCNKRVIESLIKAGAFDSFGHTRLSMMRVHEDAVDAVVPLKRQEAMGQFDL 950 Query: 927 FAHEKGTFSDKITLE-----------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 F G ++ + E+ +LG Y S HPLD + IL Sbjct: 951 FQGFGGGGDGDTAVQTASSPLAHLKFDDEEYPRKQKLAYEREMLGLYVSAHPLDGAERIL 1010 Query: 976 RKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 RK + +A I +A ++ S +++ +KG T + E FFP Sbjct: 1011 RKHAKRPIAAILADPPKEGEIEIAGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1069 >gi|108563880|ref|YP_628196.1| DNA polymerase III subunit alpha [Helicobacter pylori HPAG1] gi|107837653|gb|ABF85522.1| DNA polymerase III alpha-subunit [Helicobacter pylori HPAG1] Length = 1211 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 371/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++++ +F HL +H+ YSLL+GA + + +I ++++TD N+F A++F Sbjct: 1 MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + I DNL + L EGY+ L+ L S YL + Sbjct: 61 EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E ++G+I + G ++ N+ A+K + Sbjct: 115 FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173 Query: 175 KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +++F D Y+ + RH D+ + QV++++ L ++ATN++ + D +A +V M Sbjct: 174 QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA ++ K R + + + Y+K+ EM +F+D+PEALENT EIA +C + + Sbjct: 234 VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293 Query: 293 PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +++ + +KA GL+ RL + Y++RL+ Sbjct: 294 NPPTPPSFKFTKAYAKNEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 E+ VI MKF GY LIV DFI++AK+ IPVGPGRGS AGS+ A+AL ITDIDPL++ L Sbjct: 351 KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPD D DFCQ RR E+I Y+ KYG VAQ+ITF + AK +RDV Sbjct: 411 LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513 R L MPY + D KLIPN + + + +E ++ ++ E Sbjct: 471 RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530 Query: 514 ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 S LE L R+A HAA +V+ + L P++ ++ VTQ++MK++E LIKFD Sbjct: 531 YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590 Query: 573 FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGLKTLT++ +L + Q + VD + DD + Y + + T+GIFQ+ES + Sbjct: 591 FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 + ++P EDIIA+++L RPGP+++ + + NRK+G E I ++P+LK T G I Sbjct: 651 NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI Q + G+SL EAD++RRAMGKK + M K +F+ GA G A N+ Sbjct: 711 VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y EF+AA +T E + +E + ++ + Sbjct: 771 WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860 R I++MPP +N+ DF V + +I + L A+KGVG ++I+E Sbjct: 831 RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERVKG 890 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + SLEDF SRVD KL ++ LE LV +G+LD GY+R +L +LD I + +K Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950 Query: 921 NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++F + +++ L+ ++ E E LG + SG+PLD +K ++ Sbjct: 951 MMQGGNSLFGAMECGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + G+ L ++ ++K ++ G G + ++E F Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068 >gi|291485359|dbj|BAI86434.1| DNA polymerase III DnaE [Bacillus subtilis subsp. natto BEST195] Length = 1115 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 383/1026 (37%), Positives = 589/1026 (57%), Gaps = 37/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D+ +VLL + GYQ L+++ S + +G Sbjct: 62 IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 112 ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G + Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ + Sbjct: 167 FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + + Sbjct: 226 -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L + + GL G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 281 DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RRD Sbjct: 334 EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 394 EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP+ + Sbjct: 454 EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + D + Sbjct: 512 GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 572 TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE +D+ Sbjct: 632 RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP+ F Sbjct: 692 ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK VG Sbjct: 752 MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL S+D Sbjct: 812 SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F E +FS K + E+ LG YFS HP Sbjct: 872 ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ L G ++ ++ + L ++ + +T+ G + ++T S+ E Sbjct: 928 LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986 Query: 1028 EANFFP 1033 EA FP Sbjct: 987 EAVVFP 992 >gi|16079975|ref|NP_390801.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168] gi|221310864|ref|ZP_03592711.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168] gi|221315190|ref|ZP_03596995.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320107|ref|ZP_03601401.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. JH642] gi|221324389|ref|ZP_03605683.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. SMY] gi|6166145|sp|O34623|DPO3A_BACSU RecName: Full=DNA polymerase III subunit alpha gi|2293260|gb|AAC00338.1| DNA-polymerase III alpha-chain [Bacillus subtilis] gi|2635388|emb|CAB14883.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1115 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 383/1026 (37%), Positives = 589/1026 (57%), Gaps = 37/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D+ +VLL + GYQ L+++ S + +G Sbjct: 62 IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 112 ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G + Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ + Sbjct: 167 FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + + Sbjct: 226 -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L + + GL G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 281 DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RRD Sbjct: 334 EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 394 EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP+ + Sbjct: 454 EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + D + Sbjct: 512 GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES+GMR L+ ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 572 TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE +D+ Sbjct: 632 RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP+ F Sbjct: 692 ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK VG Sbjct: 752 MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL S+D Sbjct: 812 SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F E +FS K + E+ LG YFS HP Sbjct: 872 ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ L G ++ ++ + L ++ + +T+ G + ++T S+ E Sbjct: 928 LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986 Query: 1028 EANFFP 1033 EA FP Sbjct: 987 EAVVFP 992 >gi|57505669|ref|ZP_00371595.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195] gi|57015942|gb|EAL52730.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195] Length = 1197 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 373/1060 (35%), Positives = 590/1060 (55%), Gaps = 49/1060 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YS+L+GA L + + ++A+TD N+F A++F Q + G++PI Sbjct: 4 FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D+L + L GY+ L+ L S+ Y+ R Sbjct: 64 IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEMGYKNLMYLSSQSYIHGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A + L +K++FGD Sbjct: 118 INKKLLEK-HSEGLICSSACLQGEVNWHLNIHNERNVRFGAKGYEAAREAALWYKRVFGD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ ++ ++ATN++ + +E EAH+V M + Sbjct: 177 DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-- 296 ++ DR R + + Y+K +M +F+D+PEA+ NT ++A +C+ L++ P P F Sbjct: 237 LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296 Query: 297 ------------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 ++ + + ++ + GLE RL +Y+ RL+ E Sbjct: 297 REYAKEFNVALAQENVEFSFENDDLVFEHLCRKGLEERLK---FIDESKHDEYKARLETE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + +I MKFSGY LIV DFI+ AK NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF Sbjct: 354 IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCRDRRDEVINYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L + VD KL+P + + +A + + +E P L E ++ LEGL R+ Sbjct: 474 LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKSLEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L P++R ++D +TQ++ +E LIKFDFLGLKTLTL+ Sbjct: 533 AGVHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592 Query: 583 QKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 D+IA+++LYRPGP+++ + + +RK+G +KI+ ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K+ F +GA K G ++ A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E + + ++ ++ NI+++PP Sbjct: 773 GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 +N +F I Y L AIK VG +++E + F L DF S++D Sbjct: 833 RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 + K+NRR LE + AG+ D FG++R L +LD + + A+ + + R N ++F E+ Sbjct: 893 TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952 Query: 934 FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 KI + S + + E+ +LG Y SGHPLD + + + + G Sbjct: 953 ADTKINIVMDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I V + + ++ G R G + + +E F Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFETTIF 1052 >gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756] gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756] Length = 1143 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 486/1046 (46%), Positives = 673/1046 (64%), Gaps = 48/1046 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNL 52 ++ FVHL+V S+YSLLEGA+ + I D+ NL Sbjct: 5 EADGFVHLRVRSAYSLLEGAIKADQIGKLAAAAGMPAAGLADRA--------------NL 50 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F ALE+S A AG+QPIIGC L + + + + P+++LL +GY L Sbjct: 51 FGALEYSSYAKDAGVQPIIGCALPV-----VGIGGGPTERWARAPTVMLLAQNEQGYLNL 105 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 EL S YL + + + E ++GLI+L+GG+ GP+D F + A L Sbjct: 106 SELSSIAYLDSAELPEPVVPWAKVVEY-SDGLILLSGGTDGPVDALFAAGKAAEASAALA 164 Query: 173 TFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++FGDR YV LQRH + E +V AY +++PLVATN+ F + YEAHD L Sbjct: 165 EMHRVFGDRFYVELQRHGLPKQAAAEPGLVNWAYENDVPLVATNDVYFAKSQFYEAHDAL 224 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + +A V Q +R RVT +H+ K ++M +F+DLPEA +NT++IARRC+ Sbjct: 225 LCIADGAFVGQDERRRVTSEHWFKPPADMRKLFADLPEACDNTLDIARRCA----FMVHK 280 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 + + E ELR++A GL++RL + ++Y +RL+FEL++I +M Sbjct: 281 RAPILPSFPTGDGRNEAEELRHQAREGLKMRL--DGLTLSAPEEEYWKRLEFELDIIEKM 338 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIV+DFI+W K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+ Sbjct: 339 GFPGYFLIVSDFIKWGKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPE 398 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFD+DFCQ+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P Sbjct: 399 RVSMPDFDVDFCQERREEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGL 458 Query: 472 VDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VDRLCK++PN+PA PV+ QAI + R R+AR D +V L ++ +LEGL+R+ASTHAA Sbjct: 459 VDRLCKMVPNNPAAPVTLAQAIDIEPRLRQARDEDANVANCLNVALQLEGLFRNASTHAA 518 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VIGDRPL+QL P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++ L Sbjct: 519 GVVIGDRPLTQLTPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLK 578 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +RG ++DL +PFDD +TY LL + T+G+FQLES GMR L M+ IE+I AL+SLY Sbjct: 579 KRGFEIDLGKLPFDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLY 638 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI + + K G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EA Sbjct: 639 RPGPMDNIDTFVDCKFGRKPVDTLHPSLEGVLKETYGVIVYQEQVMQIAQILAGYSLGEA 698 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK KEEMD QK RF+SGA + + + + +IFEL+AKFA YGFNKSHAAAYA Sbjct: 699 DLLRRAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ISYQTAW+K + PVEF AASM+L++ N +K+ F QDAR+F I + P VN DF+V Sbjct: 759 FISYQTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV 818 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + + Y+L AI+ VG +H++ + PF + DF R+D +++N+R +E+L AG Sbjct: 819 ENGEVLYALGAIRNVGLDAMKHLVAVREEGGPFRDIFDFVERIDPRQVNKRAIENLARAG 878 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D F +R Q++ S D + +AQ +R +F + G + + L K N Sbjct: 879 AFDSFHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLAKTENWNQV 936 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQK 1007 + E +GFY +GHPL+ +LR+ E++ G R+ MV +Q++ Sbjct: 937 DLLDEELSAVGFYLTGHPLEDMVGMLRRRRTAMLAEAMVQAEAGMEAFRMCGMVRRRQER 996 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ G + +V+ S+P EYE FP Sbjct: 997 ASQSGEKFAFVSLSDPTGEYEV-LFP 1021 >gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS 5C-B1] gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS 5C-B1] Length = 1235 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 363/1110 (32%), Positives = 563/1110 (50%), Gaps = 91/1110 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKA 62 +VHL VH+ YS+L+G + ++DK AD +AITD N+F EF +K Sbjct: 3 DYVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNKKL 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G +PI GC++ + + + + +++L GY+ LI+LVSR Sbjct: 63 KAEGKQPFKPIFGCEMYVARRTKQDKVKE--MGDMSGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R + L++ E LI+ + +G + R + + + +K++FG Sbjct: 121 W-VDGYYMRPRTDRADLEKYH-EDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ +QRH D + +++LA + + ++ TN+ F+ +++ E Sbjct: 179 EDYYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDNAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R + + K R+EM +F DLPE L NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAYSI 298 Query: 287 VHAPILPRFIEKECDDIQKEEENEL--------------------------RNKAVAGLE 320 H PI+P F + ++E E + R + + G E Sbjct: 299 NHDPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGGYE 358 Query: 321 VRLAQGAIAKGYH---------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A +++ R+ FEL+V+ M F GYFLIV+DFI+ Sbjct: 359 KMYRIKFEADYLEQLTYEGARKIYGDSFSKEIDDRIRFELHVMKTMGFPGYFLIVSDFIR 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF Sbjct: 419 AAREELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+++V +KYGHE A IIT+GS+ K +++DV R ++P ++ + LCK IP+ Sbjct: 479 DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKAIPDRLP 538 Query: 485 HPVSLQ---AIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI R+A + + ++ ++ LEG R HA G +I P+S Sbjct: 539 DGLKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598 Query: 541 QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 VP+ D TQ++ IE+ GLIK DFLGLKTL+ L++++ + RG+ Sbjct: 599 DWVPISTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTRGI 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD TY L T+G FQ ESSGM+ L + P D+IA+ +LYRPGP Sbjct: 659 DIDLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +DNI + RK G E I P+++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR Sbjct: 719 MDNIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI G KNG I I+ KFA Y FNKSHAA Y+ +++ Sbjct: 779 KAMGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAACYSWVAF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP EF+AA M+ D + ++ K + + NI + P VN F V Sbjct: 839 QTAYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKFGVNHHG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A+ I++ A + + DF RVD +NR+ ESL +G D Sbjct: 899 EIRFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R + ++ + +Y Q + ++ ++F E + K + Sbjct: 959 SFGLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPAIPKPEL 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002 ++ R E ++G Y S HPLD Y +L+ M E + +NI M+ Sbjct: 1019 WSNIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIVFGGMIT 1078 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K T+ G G+VT + + E FF Sbjct: 1079 DVKDKFTKTGKPCGFVTIEDFSGSGELAFF 1108 >gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136] gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136] Length = 1265 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 359/1147 (31%), Positives = 569/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK A+ IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PIIGC++ + + Sbjct: 63 NGEIKDLKKKIAALESGKAESENPEVDLAACREQLEAAKKKLFKPIIGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +T++ + +V+L +GY LI+LVS+ + + R L++ EGL Sbjct: 120 LTDKEGKADQSGYHLVVLAKNLKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ + G I R AE+ + +K LFGD Y+ LQRH+ Sbjct: 178 IVCSACLGGEIPRRITAGQFAEAEEAIQWYKNLFGDDFYLELQRHKATVPRANHETYKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 ++V+ + + + LV TN+ F+ EE+ EAHD L+ ++ + +R T + Sbjct: 238 EVVNQKLVEYSKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R EM +F+D+PEAL NT +I + F +API+P F E ++E Sbjct: 298 MKTREEMNEVFADVPEALANTCDICDQVEFYSIDNAPIMPTFAIPEDFGTEEEYRKKFTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G R + Sbjct: 358 KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEH 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS Sbjct: 418 L------EDEVKERIKFELHIMKTMGFPGYFLIVQDFISAARNQLDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 +DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++L+ + Q +G+ +++ IP DD TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKQSKGIILNIDEIPIDDPATYRLYSEGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPDFIDRKQGRKPIEYDIPV 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG I I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKILEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856 N+ +I K +++ + ++ P VN + F V I + L AIKGVG + + I+ Sbjct: 892 NITEITKLMDESKATGVNVLGPDVNESSLKFSVNRHGDIRFGLGAIKGVGESAVQSILTE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + PF + DF RV+ NR+ +E+L AGA D F R ++ Sbjct: 952 RQKNGPFKDIFDFVQRVNLSACNRKNIENLALAGAFDSFPNIHREDFFVKNAKDETFVEV 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + + S + R E+ ++G Y S HP Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGEHEVEIATPEIVRASAWSDLERLNKERELVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD + IL + + N + L +V ++ T+ G G + + Sbjct: 1072 LDEFSVILENVCNTHMAQLSDLTPLQNHDLTLGGIVTGVREGYTKTGKPFGVAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 TAEFAFF 1138 >gi|294787965|ref|ZP_06753209.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 1151 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 375/1038 (36%), Positives = 564/1038 (54%), Gaps = 30/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ ++ L++HS +S+++G + L + A PA+ +TD N F L+F + Sbjct: 1 MAQAH-YIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRN 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G + I +LL+ +GY RL EL+++ + Sbjct: 60 AGIKPIMGADVRIHNPHKP----------DNPYRALLLIRNEKGYTRLSELLTQAHTHQH 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 Q + WL E GLI L+G G + A+ + F + Y+ Sbjct: 110 NHQPPELLEDWLAEGDNSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYL 169 Query: 185 NLQRHRGYDRY--RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 LQR + S +++A +LP+VAT+ + FL D+ AHD + +A+ ++ Sbjct: 170 ELQRLPEKPEWETYVSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTD 229 Query: 243 KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 RPR Y EM+S F+D+PEAL+N+VEIA+RC+ L + LP+F + Sbjct: 230 PKRPREFVASQYFIQPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGM 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ + L N + L + +Y+ RLDFELN I +M F GYFLIV Sbjct: 290 NLD-DYIIHLSNLGLQERLDTLYPNETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQ 348 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK+N PVGPGRGSGAGS+ AY+L ITD+DPL++SLLFERFLNP+R+SMPDFDID Sbjct: 349 DFINWAKQNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDID 408 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FCQ R VI YV+ KYG + V+QI+TFG+L +K+ +RDVGR LQ+P+ D+L KL+P Sbjct: 409 FCQANRGRVIEYVREKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPI 468 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P+ L+ + + + L++++ KLE L R+ HA G++I +S Sbjct: 469 VQNKPLHLEKAIATEPEMMQIVKEEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISD 528 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVD 597 +Y+ PV+ ++ +E+ GL+KFDFLGL+ LT+++ + +F+ Q D Sbjct: 529 FCGVYQADEHASPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVND 588 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +++ P DD Y + T +FQ ESSGM++ L + +E+IIA VSLYRPGP+D Sbjct: 589 VNIAPLDDQAAYQIFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDL 648 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + + K +HPL+ P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRRAM Sbjct: 649 IPDFIA-RMKGAKFEYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAM 707 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKK EEM K ++ F GA+K GI++ A IF+ + KFA YGFNKSHAAAYA +S+QTA Sbjct: 708 GKKKVEEMVKHRDIFAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTA 767 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVGDNR- 834 W+K HYP EF+AA+M+ E+DN +++K F DAR I +PP VN F + + Sbjct: 768 WLKAHYPAEFMAATMSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVPNNQKQ 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F +L DFC RV + +NRR +E+L+ GA D Sbjct: 828 IRYALGAIKGTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDG 887 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL +++ + A +K +F + L + + S + Sbjct: 888 LETNRALLLANVELALQNAD--QKANNANQGGLFDMLDDAIEELEMLPE-KAWSESQKLA 944 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E++ +GFY SGHP + ++ +R+ + +A + + G Sbjct: 945 EEKQAIGFYLSGHPFEPHRAEVRQFSKTPLAQLRPAQHTQ--LIAGFATQIRTIMGKNGK 1002 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I T + E Sbjct: 1003 FIAI-TLEDNTASQEVIV 1019 >gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M] Length = 1180 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 316/1062 (29%), Positives = 514/1062 (48%), Gaps = 41/1062 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S SFVHL H+ YS+L+GA + +L ++ PAI +TD N+F A EF A A Sbjct: 4 SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63 Query: 66 GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIG + + + + + ++ A G + L +L Sbjct: 64 GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Q + R+ + E EG+I TG SG + + A + ++ Sbjct: 124 SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG D ++ L H +R ++++ ++P +ATN+ +++ + H+ L+ Sbjct: 183 EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 V +S +R + D Y + + D + Sbjct: 243 VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + L ++ +AGL R G QDY R ++E+ VI F Sbjct: 303 DRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDKGF 356 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ +I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R Sbjct: 357 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 416 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 417 SAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476 Query: 472 VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K P A + + + + R DP V + + ++ LEGL Sbjct: 477 ADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLI 536 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 537 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++ + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 597 GDAIENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFN 656 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKN ++ + IHP ++ L ET G+I+YQEQ+ Sbjct: 657 DIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQI 716 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 717 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 776 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 777 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 ++PP VN V+F I + L A++ VG ++ F D+ +++D Sbjct: 837 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDI 896 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++V ESL+ AGA D G+ R L + +K ++F Sbjct: 897 SACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSGA 956 Query: 935 SDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 957 DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVSN 1016 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ + ++ + G + E FFP Sbjct: 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058 >gi|298247514|ref|ZP_06971319.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297550173|gb|EFH84039.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1173 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 320/1057 (30%), Positives = 551/1057 (52%), Gaps = 47/1057 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ F HL VH+ YSLL+G + ++ + +AITD ++ ALEF + A Sbjct: 1 MQNFTDFAHLHVHTEYSLLDGFSRIKTLVKQAKELGMKHLAITDHGAMYGALEFYKACKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+P++G + + N+K +G+ ++LL GY+ L+++++ Sbjct: 61 NDIRPVLGVEAYLTEDMNVKAKKRGQR---DYTHLLLLAKNNTGYRNLMKMMTIANTEGM 117 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI + + EG+I + G + + A+ + ++ + G Y Sbjct: 118 YANHARIDKNIFSQY-AEGIIATSSCLGGEVPQLLLEGKENEAKNIIRWYQDVLGRGNYY 176 Query: 184 VNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 + +Q H G++ + L ++P++ TN+ ++ + D AH+VL+ V Sbjct: 177 LEIQEHHGHEKNGTPSPQDKLNKMLYGLHKELDVPMIVTNDLHYVQDTDAHAHEVLLCVQ 236 Query: 236 HSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + +S +R + +++L++ +M+ +F +L + L NTV +A +C + LP+ Sbjct: 237 TGSTLSDPNRFAFDSNEYFLRSPQQMLDLFPELHDGLLNTVRLAEQCEVDPLAYKAQLPK 296 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + L + + G+ G + +++LD+EL++I + F Sbjct: 297 VDIP---PQYGTPDEFLYAQCLEGIRY-------RFGELTEPLKRQLDYELSIIVQKGFV 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL+VAD+++WA++ I RGS AGS+ A+ L IT++DPLR+ LLFERFLNP+R Sbjct: 347 PYFLVVADYVRWAREQGIR-CLARGSAAGSLVAFTLGITNVDPLRYQLLFERFLNPERDD 405 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPD D+DF DRR+EVIRY+ KYGHE VAQ++TF S+ AK +++DV R++ D+ Sbjct: 406 MPDIDMDFPDDRREEVIRYLGEKYGHECVAQMVTFNSMAAKQSVKDVARSMGR-QDLGDK 464 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + +LIP P + ++ D + D LL+++ KLEG R HAAG+++ Sbjct: 465 ISRLIPTGPKITL-QGSLNDVRDLNDLYQHDGEAKDLLDMALKLEGSVRSTGVHAAGVLV 523 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 + PL VP+ + TQ+ +E+ GLIK+D LGL LT+L ++ F+ + RG Sbjct: 524 ANEPLVNFVPLQKR--EGRISTQYEHSHLEEIGLIKYDILGLSNLTILDNAVKFIKESRG 581 Query: 594 VKVDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++L +P D + Y LL T G+FQLES+ MR+ ++ ++P CIEDI Sbjct: 582 EDINLEKLPLDPTGDPELDRKRQKAYELLAAGETTGVFQLESAKMREYIKMLKPTCIEDI 641 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 A+V+LYRPGP+D+I + + K+G++K+ + P + L+E+ GVI+YQ+QV+ IA L+ Sbjct: 642 TAMVALYRPGPMDSIPDFVDAKHGRKKVTYLDPRLSQWLEESYGVIVYQDQVLLIAVNLA 701 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 G+S + + R+A+ KKI E++ K F+ G KNG+ + +A +FE + F YGFNK Sbjct: 702 GFSWGKVNKFRKALSKKIMHEVEGYKGDFLKGCVKNGVKQEVAETLFEQILPFGGYGFNK 761 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 +HAA+YAV+S+ TA++K +Y EF+AA+MT E + +KI + ++ ++++ P VN Sbjct: 762 AHAASYAVVSFYTAYLKANYTAEFMAATMTAEAADAKKIANAIAECKRMGVEVLGPDVNK 821 Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882 F + + I + L AIKG+G I+ A A+ PF SL DFC+RVD+ + + + Sbjct: 822 SQKGFAIENGGIRFGLLAIKGIGDGPIDGIIRARAEGGPFKSLGDFCTRVDAHAVGKGAI 881 Query: 883 ESLVFAGALDCFGYS---RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KI 938 E+L+ GA+D S R LL S++ +Y + + ++F + + Sbjct: 882 ETLIKVGAMDSLMPSENQRHILLASVERAVQYGKSERSAKERGLVSLFGDLEEVGGSLEF 941 Query: 939 TLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIR 996 +L E E+ ++G Y + HPL I + G + + + Sbjct: 942 SLSTNAQEIPRKQLLEWERELIGVYIAKHPLAYLSDIFVERGATHTIGQVTEELDTKKVT 1001 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + M+ ++ T+KG + V + FP Sbjct: 1002 VGGMIKEARRITTKKGDDMCVVQLEDMYGTLGITIFP 1038 >gi|258546181|ref|ZP_05706415.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258518606|gb|EEV87465.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 1177 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 409/1060 (38%), Positives = 600/1060 (56%), Gaps = 55/1060 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 HL +HS +SL + L + I+D + AIA+TD NNL+ AL+F +KA AAGI+PI+ Sbjct: 5 THLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPIL 64 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC L + D ++LL +G+ L ELVS Y DQ Q V + Sbjct: 65 GCDLTVRDSDGTDN------------QLILLAQNLKGFIHLCELVSFAYQYDQDHQGVAV 112 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 + EGLI L+GG G + R +Q AEKR ++ +F DR Y+ L RH Sbjct: 113 HIERFTPTQCEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQ 172 Query: 192 Y-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249 + + VATN + F + +DY+ H+V + +++ + + RPR T Sbjct: 173 PGEAEYFDWCRDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFT 232 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 ++ + + M F+D P+ L NT +A RC+ L + LP F + +I E Sbjct: 233 QKYHFTSDAVMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNI----ET 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L + A +GLE+RLAQ + A Y +RL EL VI +M F GYFLIVADFIQW Sbjct: 289 FLIDSAKSGLELRLAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQW 348 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK ++IPVGPGRGSGAGS+ AYAL ITD+DPL + L FERFLNP+R+SMPDFD+DFC +R Sbjct: 349 AKDHDIPVGPGRGSGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMER 408 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVI YV +KYG +RV+QI T G++ AKA LRDVGR L +PY VD+L +P Sbjct: 409 RDEVIEYVSHKYGAQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGIT 468 Query: 487 VSL-----QAIADDSRFR-----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 + D R E D + +++I +LEGL R+ HA G+VI Sbjct: 469 LPDALGRSTKSQDKPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAP 528 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 L+ +Y + TQF+ IE GL+KFDFLGL+TLT++ +L + R Sbjct: 529 TKLTDFSALYSESAGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTRE 588 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +D++ +P DD +TY LL + T +FQLESSGM++ + ++PD EDIIALV+L+R Sbjct: 589 GQPPLDIATLPLDDPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFR 648 Query: 652 PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + + + NRK+G ++ HP ++ +L+ T GV++YQEQVMQ+AQ L+ YSL E Sbjct: 649 PGPLGSGMVDDFINRKHGLAEVEYPHPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGE 708 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD LRRAMGKK EEM + K+ F+S A + G+ + A +IF+L+AKFA+YGFNKSH+AAY Sbjct: 709 ADNLRRAMGKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAY 768 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K HYP E +AA +T E++ ++KI +F +AR + ++PP +N F Sbjct: 769 ALLSYQTAWLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFT 828 Query: 830 VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V + I Y L A+KGVG ++E + + SLED C R+D KKLNR+ LE+L+ Sbjct: 829 VSERGEIIYGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIR 888 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFS 944 AG+ D +R L +++ K A+ +NR ++F + D+ + Sbjct: 889 AGSFDNIEPNRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEE 948 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVA--------TIRGN-- 993 + E++ LG + S HP+D + +L+ + + T RG+ Sbjct: 949 AWDLRQTLAEEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSI 1008 Query: 994 NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + LA +V+ + ++K G+ + ++T + + E F Sbjct: 1009 EVILAGVVIEARSMVSKKNGNPMIFLTIDDRSGRQEIGVF 1048 >gi|325962960|ref|YP_004240866.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans Sphe3] gi|323469047|gb|ADX72732.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans Sphe3] Length = 1185 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 374/1073 (34%), Positives = 547/1073 (50%), Gaps = 56/1073 (5%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S SFVHL H+ YS+L+GA L + D+ PA+A TD LF A +F +KA Sbjct: 1 MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKAT 60 Query: 64 AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 GI+PIIG + + + + + LL G + L Sbjct: 61 DKGIKPIIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGGSYTHMTLLSYNNAGMRNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 S L + R+ L +EGLI TG SG I + A + Sbjct: 121 FRASSIASLDAVFGKWPRLDRELLNTY-SEGLIATTGCPSGEIQTRLRLGQYREALEAAA 179 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F+ +FG + + L H +R +++LA LPLVATN+ + E D +AH+ Sbjct: 180 EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEA 239 Query: 231 LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283 L+A+ + + + +YLK+ EM +F D P+A +NT+ IA RC Sbjct: 240 LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPDACDNTLLIAERCEV 299 Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 A +PRF +D E + L + GLE R G + R + D+ Sbjct: 300 SFNTGANYMPRFPCPPGED----ETSWLVKEVAKGLEYRYPGGV------PDNVRAQADY 349 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL VI M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR L+ Sbjct: 350 ELGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLI 409 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+SMPDFD+DF RR EVI YV KYG ERVA I+T+G+++ K AL+D R Sbjct: 410 FERFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEI 514 L P+S ++L K +P A + FR+ DP ++ E Sbjct: 470 VLGYPFSMGEQLTKALPPAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFET 529 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +EGL R HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK DFL Sbjct: 530 ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDFL 589 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + RG+ +DL + DD +Y LL TLG+FQL+ MR L+ Sbjct: 590 GLRNLTIISDALENIKLNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLK 649 Query: 634 GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687 M+PD EDI A+++LYRPGP+ + Y RKNG + ++ IHP ++ L E T G Sbjct: 650 LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQPVIPIHPELEEPLSEILGGTYG 709 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ F G NG S Sbjct: 710 LIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAVK 769 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++++L F+DY FNK+H+AAY VISY TA++K HY E++AA +T D+ +K + Sbjct: 770 TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829 Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866 + R+ I ++PP VN ++F N I + + AI+ VG ++ A + F S + Sbjct: 830 ECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSFK 889 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D+ +V + N+R +ESL+ +GA D G+ R L + +++N ++ Sbjct: 890 DYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949 Query: 927 FAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 FA + S I + + E+ +LG Y S HPL + +L + Sbjct: 950 FAGFEEAESESSLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHAEMSI 1009 Query: 984 EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G I +A M+ S ++ G+ + E FF Sbjct: 1010 TSVLGEDGPQDGAIITIAGMITSLSRRIAKASGNAYARAEVEDLGGSMEVMFF 1062 >gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1] gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1] Length = 1177 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 401/1058 (37%), Positives = 589/1058 (55%), Gaps = 58/1058 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ +++LV + +GY + EL++R + + + + Sbjct: 62 LGAEIVLE-----------GLGDAPPSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQAQ 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 111 HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 170 RPDDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D Y K +EM +F D+P A+ENTVEIARRCS L++ P LP F + + Sbjct: 230 TRDQYFKTAAEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSM----D 285 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+++ GLE L A + Y +RL+FEL I +M F GYFLIV+DFI+ Sbjct: 286 EFFRHESYQGLEERLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 346 WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 406 NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ AI ++ E + V L+E++Q LEG+ R+ HA G Sbjct: 466 HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 526 VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL + Sbjct: 586 RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN F Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVHRF 825 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877 + V D I Y L AIKG G I+ A PF SL DFC RVD ++ Sbjct: 826 EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSRI 885 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R +E+L+ GA D +R L+ +LD +A N +F G+ Sbjct: 886 NKRTVEALIKGGAFDSIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + + + + E+ +GFY +GH D + +R+ E + Sbjct: 944 STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +A ++ + ++G + T + + EA+ Sbjct: 1004 --TMAGIIGGLRTINGQRGKLSIF-TLDDKSAVIEASV 1038 >gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A] gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A] Length = 1239 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 347/1120 (30%), Positives = 533/1120 (47%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 +VHL VH+ YS+L+G + ++DK AD +A+TD +F EFS Sbjct: 3 DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +P+ GC++ + + + +++L GY+ LI+LVS+ Sbjct: 63 KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G I + + A + + ++FG Sbjct: 121 W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPNKIIHDDIEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + ++ TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 239 AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++E Sbjct: 299 DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G G + + + + + FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYDGA------GKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE A IIT+ ++ K ++RDV R ++ + LCK Sbjct: 473 DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI R +EA D ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 RQTTGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D+ K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I + P +N + F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + LAAIKG+G + A I+ + + + DF RVD +NR+ ESL Sbjct: 893 GVNSRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 ++G D FG R Q LD I +Y Q + + + ++F Sbjct: 953 YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPV 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------ 993 K + + E+ ++G Y S HPLD Y +L M + Sbjct: 1013 APKTEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVD 1072 Query: 994 NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + + G G+VT + E F Sbjct: 1073 EVTFGGIVTAVSERFSQKTGKPFGFVTIEDFKGSGELALF 1112 >gi|88856521|ref|ZP_01131178.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] gi|88814175|gb|EAR24040.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] Length = 1174 Score = 705 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 357/1061 (33%), Positives = 547/1061 (51%), Gaps = 49/1061 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + SFVHL VHS YS+L+GA + +LD PAIAITD N+F A +F + A A G Sbjct: 6 NNDSFVHLHVHSEYSMLDGAARVGPLLDAAVEQGMPAIAITDHGNMFGAYDFWKSATARG 65 Query: 67 IQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIG + I T + LL EG L + Sbjct: 66 IKPIIGTEAYITPGTARGDKTRVRWGGSHQTRDDVGGSGAYTHMTLLSQNNEGMHNLFRM 125 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S+ + + R+ L + ++G+I TG G + A + F+ Sbjct: 126 SSKASI-EGFYFKPRMDRELLSQY-SKGIIATTGCVGGEVQTKLRLGLYDEARQAAADFQ 183 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG + + + H +R +++LA ++PL+ATN+ + D AH L+ Sbjct: 184 DIFGKENFFAEIMDHGIDIERRTILDLIKLAKELDMPLLATNDLHYTHSHDATAHAALLC 243 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V ++ + +R + + + YLK+ +EM S+F + PEA +NT+ IA RC + Sbjct: 244 VQSASTLDDPNRFKFDSNEFYLKSAAEMRSLFREHPEACDNTLLIAERCEVSFE-----G 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 + + + E + G+ R + + + +E++VI +M Sbjct: 299 RDLMPRFPVPEGETEATWFEKEVAKGMNKRF------NNAPSDAHLAQAKYEVDVIQQMG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI+WAK I VGPGRGS AGS+ +YA+ IT++DPL L+FERFLNP+R Sbjct: 353 FPGYFLVVADFIEWAKAQGIRVGPGRGSAAGSMASYAVGITELDPLAHGLIFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DF RR EVIRYV KYG +RVAQI+T+G+++AK AL+D R L MPYS Sbjct: 413 VSMPDVDVDFDDRRRGEVIRYVTEKYGDDRVAQIVTYGTIKAKQALKDSARVLGMPYSVG 472 Query: 473 DRLCKLIPN-DPAHPVSLQ--------AIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 ++L K +P +SL + + R D ++ + + LEGL R Sbjct: 473 EKLTKAMPPAIMGKDISLHDVRNKDAPRYKEAADIRGIVDTDAEAAKVFDTAVGLEGLKR 532 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 HAAG+V+ PL ++P+ R +TQF+ +E GLIK DFLGL+ LT+++ Sbjct: 533 QWGVHAAGVVLSAEPLLDVLPIMRREDDGAIITQFDQPPLESLGLIKMDFLGLRNLTVIE 592 Query: 584 KSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L + + D +TY LL TLG+FQL+ MR L+ ++P E Sbjct: 593 DALTMIKANTGSPLVIEDLDLDADQKTYDLLARGDTLGVFQLDGGPMRALLKQLKPTNFE 652 Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI A+++LYRPGP+ E I +IHP ++ LK T G+I+YQEQV Sbjct: 653 DISAVIALYRPGPMGMNSHTKYALRKNGLEDIDAIHPELEEPLKEILGTTFGLIVYQEQV 712 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M +AQ ++G++L +ADVLRRAMGKK KEE+DKQ F SG +NG SK ++E L Sbjct: 713 MSVAQKVAGFTLGQADVLRRAMGKKKKEELDKQFIGFESGMLENGFSKEAVKVLWETLMP 772 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FADY FNK+H+A Y V+SY TA++K +YP E++AA +T D+ +K+ + + R+ I+ Sbjct: 773 FADYAFNKAHSAGYGVLSYWTAYLKANYPAEYMAALLTSVGDSKDKLGMYLSECRRMGIK 832 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 ++ P VN V+F I + L A++ VG + I+ A F+S D+ +V Sbjct: 833 VLAPDVNESTVNFTAVSGDIRFGLGAVRNVGASVVEQIVRARTEKGRFESFHDYLRKVSI 892 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 + N+R +ESL+ +GA D G +R LL+ ++ A +++N N ++F Sbjct: 893 QVANKRTVESLIKSGAFDSLGATRRGLLEIHEDACDSAVSLKRNEANGQVDLFGGIFDFD 952 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIR 991 D + + + + E+ +LG Y S HPL + L K E ++ Sbjct: 953 GDDDGVPERPEWSKRDKLAFEREMLGLYVSDHPLSGLELQLAKHQDATITEVLSGDVVAD 1012 Query: 992 GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031 G+++ +A +V S Q + R G++ G VT + E F Sbjct: 1013 GDHVSIAGLVTSVQHRVARNSGNQYGIVTVEDFGGEISVMF 1053 >gi|269216173|ref|ZP_06160027.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122] gi|269130432|gb|EEZ61510.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122] Length = 1194 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 328/1062 (30%), Positives = 533/1062 (50%), Gaps = 50/1062 (4%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + FVHL H+ YS+L+GA + +++ + A PA+AITD + E Sbjct: 22 AMP----FVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACA 77 Query: 64 A------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 A ++PI GC++ + + + +++L +EGY L+ LVS Sbjct: 78 AVERETGKKVKPIYGCEIYFTEDPEVGTKKRS-----PLYHMIMLAKNSEGYHNLLHLVS 132 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 ++ D R L +++ +G++ + +G I R A + TFK + Sbjct: 133 ESHM-DNYYYKPRTTLDMIKK-HAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDI 190 Query: 178 F-GDRLYVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 F Y+ LQ Q+ LA+ L +ATN+ +L+ ED +A D+ Sbjct: 191 FEPGDFYIELQDQGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDI 250 Query: 231 LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 ++ + + ++R R + Y+K EM D PEA +NTV++A +CS L+ + Sbjct: 251 MLCIGTGSNYDDENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELERDS 310 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-----AKGYHAQDYRQRLDFE 344 + EE R + GL R D +R ++E Sbjct: 311 ILPR-----FPLPEGYTEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYE 365 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 VI + F YFLIV ++I+WAK N I VGPGRGS AG++ YA+ ITD++PL LLF Sbjct: 366 AGVIIQQGFPAYFLIVQEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLF 425 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFL+P+R+ MPD D+DF R +VI +V++ YG + +A +ITFG LQAK A+RD R Sbjct: 426 ERFLSPERVEMPDIDVDFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARV 485 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L PY D++CK I ++ + + ++ ++ D +++ ++ +EG R Sbjct: 486 LGHPYGVGDKICKTIGDELGITLDDA-LENNVDLKKMYDDDADTRDIIDAARSIEGNIRG 544 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HA +I PL VP+ RD + +TQ++ + + GL+K DFLGL+TL +L + Sbjct: 545 EGVHACATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSR 604 Query: 585 SLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGI---FQLESSGMRQALEGMQPDCI 640 + + R ++ IP +D E + L+ + G+ FQ+E + + P Sbjct: 605 ACKNVKARHGLEIRPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRF 664 Query: 641 EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698 DI+A ++L RPGP+++ + Y NG +I + P+L+ET G ++YQEQ+MQI Sbjct: 665 SDIVASIALNRPGPLESGMVDDYVKVANGTTEIHYYDDRLRPILEETYGTMVYQEQIMQI 724 Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758 + +SG+S +AD LR+AMGKK + M + + + GA +NG S IA I+E KFA Sbjct: 725 SMAMSGFSAGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAK 784 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNKSH+AAYA++ +TA++K HYP EF+AA ++ M N +++ K+ I ++P Sbjct: 785 YAFNKSHSAAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLP 844 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877 P VNT ++F + I + LA ++G+G A+ I++ A+ P+ SL DF +R+D+K Sbjct: 845 PDVNTSNLEFTPLEEGIRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCY 904 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EK 931 NR+ LE+LV +GA D GY+R QL+ +D+ + + A +K+R ++F Sbjct: 905 NRKTLEALVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPD 964 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI- 990 F D + + + E+ +L Y S HPL Y+ L + + Sbjct: 965 SGFDDDVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESVTKYHLGDLAEHKG 1024 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 N A +V S K TRKG+++ + E F Sbjct: 1025 DIKNAVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF 1066 >gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC 13950] Length = 1177 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 324/1063 (30%), Positives = 520/1063 (48%), Gaps = 42/1063 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+GA + +L ++ Q PA+ +TD N+F A EF A Sbjct: 1 MNHS-SFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + I + + + ++ T G + L + Sbjct: 60 AGIKPIIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFK 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + + A + + Sbjct: 120 LSSLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++FG D ++ L H ++ ++++ +P +ATN+ +++ + H+ L+ Sbjct: 179 REIFGADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V +S +R + D Y + + D + Sbjct: 239 CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAP 298 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 + ++ + L ++ +AGL R G QDY R ++E+ VI Sbjct: 299 RDRMPIFPVPEGHDQASWLHHEVMAGLARRFPSGV------GQDYIDRAEYEIKVICDKG 352 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F YFLIVAD I +A+ +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R Sbjct: 353 FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 413 PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472 Query: 471 QVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 DR+ K P A + + + + R DP V + + ++ LEGL Sbjct: 473 IADRITKALPPPIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT+ Sbjct: 533 IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 593 IGDALDNIKANRGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652 Query: 641 EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 DI+A+++LYRPGP+ Y +RKNG++ I IHP ++ L ET G+I+YQEQ Sbjct: 653 NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIVYQEQ 712 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 +M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 713 IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 773 PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN V+F I + L A++ VG ++ F D+ +++D Sbjct: 833 TVLPPDVNESLVNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKID 892 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 N++V ESL+ AGA D G++R L + +K ++F + G Sbjct: 893 IAACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGDDGC 952 Query: 934 FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 953 TEAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + E FFP Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055 >gi|28572411|ref|NP_789191.1| DNA polymerase III subunit alpha [Tropheryma whipplei TW08/27] gi|28410542|emb|CAD66928.1| DNA polymerase III alpha subunit [Tropheryma whipplei TW08/27] Length = 1164 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 376/1060 (35%), Positives = 555/1060 (52%), Gaps = 49/1060 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + Y+ SFVHL VH+ YS+L+GA +++ K A D+ PAIAITD N F A +F + Sbjct: 1 MRDYM----SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWK 56 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQR 111 A I PIIG + + N K + + LL EG Sbjct: 57 TAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHN 116 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S + + RI + L + + GLI TG SG I A + Sbjct: 117 LFKLSSLASI-EGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAA 174 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + Y + H ++ +++LA LPL+ATN+ +++ ED +H Sbjct: 175 AQMRDIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHA 234 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288 L+ V + ++ +R + D + S + I F DLPEA +NT+ +A RC Sbjct: 235 ALLCVQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQ 294 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +PRF E + E + ++ G+ R G ++ ++ ++E+ V+ Sbjct: 295 RSFMPRFSVPEGE----TENSWFASEVKRGIASRYPNG------PSRRVIEQAEYEIRVV 344 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL L+FERFL Sbjct: 345 QEAGYAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFL 404 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP R+SMPDFDIDF + RR EVI YV KYG + VAQI+TF +++AK AL+D R L P Sbjct: 405 NPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYP 464 Query: 469 YSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLE 519 YS +RL K +P + L+AI D S R+ +D + ++ ++ LE Sbjct: 465 YSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLE 524 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 L R + HAAG+++ D P+ ++P+ + VTQF+ E GL+K DFLGL+ L Sbjct: 525 NLKRQWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNL 584 Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L + Q + KVDL +P DD E Y LL TLG+FQL+S +RQ LE MQPD Sbjct: 585 TIIDDALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPD 644 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692 +DI A ++LYRPGP+ + Y RKN K++I IHP + +L T G+I+YQ Sbjct: 645 SFDDISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQ 704 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV+ IAQ L+G++L EADVLR AMGKK K+E+D+Q +F +G K G S ++ + Sbjct: 705 EQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNV 764 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+HA AY +ISY TA++K HYP E++AA +T + +K+ + Q+ R Sbjct: 765 LLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHM 824 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 I+++ P +N F I + L AIK VG I+E D PF SL DF R+ Sbjct: 825 CIKVLLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRM 884 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 LNRR + SL+ AGA D +R L+ ++ + Q + ++ Sbjct: 885 PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSD---VSLLDGLLD 941 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + N+ R + E+ +LG Y S HPLD + L K E ++ Sbjct: 942 EYEG-FSPPDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ 1000 Query: 993 NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031 + IR+A ++ S + K R+ G R + + E + Sbjct: 1001 DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040 >gi|284035464|ref|YP_003385394.1| DNA polymerase III subunit alpha [Spirosoma linguale DSM 74] gi|283814757|gb|ADB36595.1| DNA polymerase III, alpha subunit [Spirosoma linguale DSM 74] Length = 1205 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 347/1097 (31%), Positives = 542/1097 (49%), Gaps = 95/1097 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKI---------AADQQPAIAITDTNNLFSALEFSQK 61 F HL H+ YSLL+G + AD PA+AITD N+F EF + Sbjct: 3 FSHLHCHTQYSLLDG---------QADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAE 53 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 A GI+PI+GC+ + + K K +LL A+GY+ L +L S Y+ Sbjct: 54 ASKQGIKPIVGCEFYVVEDHHKKQF--TKEQKDVRYHQLLLAKNAQGYKNLAKLCSLGYM 111 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + R+ + + EGLI T + + + E + FG+ Sbjct: 112 EGLYGKYPRVTKELIDQY-KEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGED 170 Query: 182 LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 YV LQRH D+ +++ A + + ++A+N+S ++ ++D+ AHD+L+ V + Sbjct: 171 YYVELQRHEIPDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQ 230 Query: 241 SQKDRP---------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 S + Y KN EM ++F DLPEA++NT EI + + Sbjct: 231 STPSMKDFSDDDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLK 290 Query: 286 QVHAPILPRFIEK----ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 +LP F + D + LR+ G + R ++RL Sbjct: 291 LKRDIMLPNFPIPKEFQQHTDDVLNQWEYLRHLTYEGAKERYVDILP-------HIQERL 343 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 DFEL I M F+GYFLIVADFI+ + + +GPGRGS AGS AY IT+IDP+++ Sbjct: 344 DFELFTIRTMGFAGYFLIVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYD 403 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNPDR SMPD D DF + R +VI YV KYG +VAQI+T+G++ +K++++DV Sbjct: 404 LLFERFLNPDRKSMPDIDTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDV 463 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS------------------------- 496 R + +P + + KL+P+ P + ++L+ I +D Sbjct: 464 ARVMDLPLQDANAVVKLVPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRAL 523 Query: 497 -------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + V +L+ ++KLEG R+ HAAGI+I LS +VP+ Sbjct: 524 EAGDKSAAQAMRIVDFEKVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSK 583 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHET 608 ++L +TQ+ K IE AG+IK DFLGL+ LT++++ L + Q + IP DD ET Sbjct: 584 DTNLIITQYEGKVIEDAGVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEET 643 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y L T +FQ ES GM++ ++ ++PD D+IA+ +LYRPGPI I Y NRK+G+ Sbjct: 644 YKLFQRGETNAVFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGR 703 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E++ P ++ L +T G+ +YQEQ+M ++Q L ++ +ADVLR+AMGKK K +DK Sbjct: 704 EEVKYDMPEMEEYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKM 763 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 K +F+ G + N + + ++ FA Y FNKSH+ YA ++YQTA++K HY E++ Sbjct: 764 KGKFMDGCAANNLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYM 823 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847 AA +T + ++KI F ++ + + ++ P VN F V I + L IKG G Sbjct: 824 AAVLTSCLGTIDKITFFMEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGD 883 Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS- 904 I+E P+ + DF RV+ + +N++ ESL +AGA D Y R Q + Sbjct: 884 AAVEAIIEERKAGGPYKDIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMA 943 Query: 905 -------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENE 955 LD + +YA + +++F + + N + + E Sbjct: 944 EGDTSPFLDKVIRYANNYHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKYE 1003 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + V+GFY +GHPLD +K L ++ T + I++A +V S Q K + G+ Sbjct: 1004 KDVVGFYITGHPLDEFKLELDGFCNCTLDKIYETRQP-EIKVAGIVSSMQTKIAKNGNPF 1062 Query: 1016 GWVTFSEPAKEYEANFF 1032 + E F Sbjct: 1063 CIFKIEDYNTSIELALF 1079 >gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC 33574] gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC 33574] Length = 1240 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 358/1120 (31%), Positives = 541/1120 (48%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G + N++ K D +A+TD +F EF+ Sbjct: 3 DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G +PI GC++ + + + +++L GY+ LI+LVSR Sbjct: 63 KKEGKEPFKPIFGCEMYVARHRKEDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G + A + + ++FG Sbjct: 121 W-VDGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + L+ TN+ F +E E Sbjct: 179 DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ ++ +R R + + K++ EM IFSD+P+AL NT+EI + F Sbjct: 239 AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298 Query: 287 VHAPILPRFIEKECDDIQ------------------------------------------ 304 H PI+P F E + Sbjct: 299 EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358 Query: 305 -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K E + L A G + +++ ++ +DFEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLGKLAYDGAKKLYGDPL------SEEVKEHIDFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R V+++V +KYGHE A IIT+ S+ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532 Query: 479 IP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP D A AI +EA D ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+S VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP EF+AA MT + +I K ++ + NI + P VN F Sbjct: 833 YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+GT A I+ E + P+ + DF RVD +NR+ ESL Sbjct: 893 GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 +G D FG R Q + LD++ +Y Q + ++ ++F Sbjct: 953 LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993 + K V ++ + E+ ++G Y S HPLD Y IL+ + + A Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072 Query: 994 NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + K G+VT + E F Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDVPGELALF 1112 >gi|156740220|ref|YP_001430349.1| DNA polymerase III subunit alpha [Roseiflexus castenholzii DSM 13941] gi|156231548|gb|ABU56331.1| DNA polymerase III, alpha subunit [Roseiflexus castenholzii DSM 13941] Length = 1272 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 344/1057 (32%), Positives = 546/1057 (51%), Gaps = 48/1057 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VHS YSLL+G + I + +IA+TD ++ A+EF A AGI+P Sbjct: 3 DFVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + + + T++G ++LL GY+ L+ L +R +L GK Sbjct: 63 IIGLEAYMAPGSRREATSRGAKH---YYHLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI + L++ EGLI+ + +G + + + A + ++ L G D ++ Sbjct: 120 ARPRIDRALLEQ-HHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLE 178 Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQ H ++V++ +PLV TN++ F+ ED +AH +++A+ ++ + + Sbjct: 179 LQLHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKEL 238 Query: 244 DRPRVTP---DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + H + LENT IA RC+ L+ LP E Sbjct: 239 CAKQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G + Y +RL++EL+VI + F Y LIV Sbjct: 299 HD----ASSYLRFVCEEGLMRRF------NGNPPEAYMKRLEYELDVINQTGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+P+R+ MPD DI Sbjct: 349 WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR EV+ Y+ +YG E AQIIT+G+L AKAA+RD+GR L +P S+VDR+ +LIP Sbjct: 408 DFADSRRHEVLEYIAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P QA+ ++ +P + L++ +QK+EG + THA G+V+ PL Sbjct: 468 ALPVGTTIAQALERVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527 Query: 541 QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598 ++VP+ R + + + F ++K GL+K D LGL L+++ ++L ++AQ ++L Sbjct: 528 EIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMEL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP DD + + L T +FQLES GM + L ++P +ED+ A+V+LYRPGP++ I Sbjct: 588 ADIPLDDPKVFEALGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 VY + KN + I +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ Sbjct: 648 PVYIHNKNHPQDITYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK K+ M + + +F G + G+++ A ++EL+ FA Y FN+ H+ Y ++SYQTAW Sbjct: 708 KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834 +K +YPVE++AA + + I K + RQ + ++ P++N DF + + R Sbjct: 768 LKVNYPVEYMAAVLKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSD 827 Query: 835 ------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + LAAIK VG I+ A PF SLED C RVD LN+RVLESL+ Sbjct: 828 GNLKRGILFGLAAIKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIK 887 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 GALD +R Q L+ LD + +KNR ++F ++ I V Sbjct: 888 CGALDALPGNRWQKLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIE 947 Query: 948 S-----SVRFENEQRVLGFYFSGHP--LDVYKPILRK---MGIKGYEESVATIRGNNIRL 997 + E+ +LG FS P + + + + E + G Sbjct: 948 ETAERRKEKLAWEKELLGVVFSSDPRKTALERANIEHRVPLAAIRNAEGLPDYLGKVHTF 1007 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFFP 1033 A M+ + T+KG + T + E FP Sbjct: 1008 AGMLTRVRMIATKKGDTMLVATLEDENEDTVELVAFP 1044 >gi|321312457|ref|YP_004204744.1| DNA polymerase III DnaE [Bacillus subtilis BSn5] gi|320018731|gb|ADV93717.1| DNA polymerase III DnaE [Bacillus subtilis BSn5] Length = 1115 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 383/1026 (37%), Positives = 588/1026 (57%), Gaps = 37/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + D+ +VLL + GYQ L+++ S + +G Sbjct: 62 IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 WL EG+I +T G G I+ + A + L F+ +FG Y + Q Sbjct: 112 ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G + Q+++L+ +P+ AT + ++ +ED A+ L A+ ++ + Sbjct: 167 FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 PD LK EM +I+ + PEAL+ +VEIA +C + + LP F + + Sbjct: 226 -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L + + GL G + Y +RL +EL+VI RMKFS YFLIV DF++ A Sbjct: 281 DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ AY L ITD+DP++ LLFERFLNP+R+SMPD DIDF RRD Sbjct: 334 EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YVQ KYG VAQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 394 EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ I++K+EGL RHASTHAAG+V+ + PL+ +VP+ + Sbjct: 454 EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + + +K+DLS I + D + Sbjct: 512 GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T GIFQLES+GMR L+ + P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 572 TFSLLSKGDTTGIFQLESAGMRSVLKRLTPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + H + +L++T GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK KE +D+ Sbjct: 632 RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP+ F Sbjct: 692 ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL AIK VG Sbjct: 752 MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R LL S+D Sbjct: 812 SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F E +FS K + E+ LG YFS HP Sbjct: 872 ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ L G ++ ++ + L ++ + +T+ G + ++T S+ E Sbjct: 928 LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986 Query: 1028 EANFFP 1033 EA FP Sbjct: 987 EAVVFP 992 >gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont] Length = 1125 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 405/1013 (39%), Positives = 579/1013 (57%), Gaps = 38/1013 (3%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PAIAITD NL + F A +AGI+PI+G + + + Sbjct: 1 MPAIAITDYTNLCGLVRFYGSAHSAGIKPIVGADFQVA----------SDLMGDELTQLT 50 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 +L + GYQ L L+SR Y G I WL E+G I+L+GG G + R+ Sbjct: 51 VLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLELGEGL-ILLSGGRRGDVGRSLL 109 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLF 219 ++ + + L +++ F +R Y+ L R D V+LA +P+VATN F Sbjct: 110 RGNNALVAQCLSFYQQHFPNRYYLELTRTGRPDEEAYLHAAVELAIAESVPVVATNEVCF 169 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIA 278 L+EED++AH++ +A+ + RPR EM +FSD+PEALEN+VEIA Sbjct: 170 LNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRSEGEMCELFSDIPEALENSVEIA 229 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQ 335 +RC+ +++ + E+ L K+ GLE RLA + Sbjct: 230 KRCNVTVRLGEYF-----LPQFPTGDMSTEDFLVMKSREGLEERLAFLFPDEQVRAKRRP 284 Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395 +Y +RLD ELNVI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+ Sbjct: 285 EYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDL 344 Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455 DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V YG + V+QIITFG++ AK Sbjct: 345 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAK 404 Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 A +RDVGR L PY V+R+ KLIP DP + +A + + E AD V L++++ Sbjct: 405 AVIRDVGRVLGHPYGFVERISKLIPPDPGMTLE-KAFQAEPQLPEIYEADEEVKALIDMA 463 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +KLEG+ R+A HA G+VI ++ P+Y D PVTQF+ +E AGL+KFDFLG Sbjct: 464 RKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQFDKNDVEYAGLVKFDFLG 523 Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 L+TLT++ +L + R K L IP DD +++ +L T +FQLES GM+ Sbjct: 524 LRTLTIIDWALKMINPRREKQGLPPINIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 583 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLK 683 ++ ++PDC ED+IALV+L+RPGP+ + +V + I H + P+L+ Sbjct: 584 LIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLE 643 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 T G+I+YQEQVMQIAQ+LSGY+L AD+LRRAMGKK EEM KQ+ F GA K GI+ Sbjct: 644 PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFQDGAEKMGING 703 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT ++DN EK+ Sbjct: 704 ELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADIDNTEKVV 763 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 + + ++++PP +N+ F V D I Y + AIKGVG I+EA Sbjct: 764 GLVDECWRMGLKVLPPDINSGLYPFHVNDDGEIVYGIGAIKGVGEGPIEAILEARNQGGY 823 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F L D C+R D+KK+NRRV+E L+ +GA D G R L+ +L N K A K Sbjct: 824 FKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALISALGNALKAADQHAKAEAT 883 Query: 922 KHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-G 979 ++F + + + + V+ + E+ LG Y +GHP++ Y + + G Sbjct: 884 GQADMFGVLAEEPEQVEQSYAAITPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVG 943 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ T RG A +V++ + T++G+RIG T + + E F Sbjct: 944 GMRLKDMHPTERGKVTVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 996 >gi|28493477|ref|NP_787638.1| DNA polymerase III subunit alpha [Tropheryma whipplei str. Twist] gi|28476519|gb|AAO44607.1| DNA polymerase III alpha chain [Tropheryma whipplei str. Twist] Length = 1164 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 375/1060 (35%), Positives = 555/1060 (52%), Gaps = 49/1060 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + Y+ SFVHL VH+ YS+L+GA +++ K A D+ PAIAITD N F A +F + Sbjct: 1 MRDYM----SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWK 56 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQR 111 A I PIIG + + N K + + LL EG Sbjct: 57 TAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHN 116 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S + + RI + L + + GLI TG SG I A + Sbjct: 117 LFKLSSLASI-EGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAA 174 Query: 172 LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +FG + Y + H ++ +++LA LPL+ATN+ +++ ED +H Sbjct: 175 AQMRDIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHA 234 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288 L+ V + ++ +R + D + S + I F DLPEA +NT+ +A RC Sbjct: 235 ALLCVQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQ 294 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 +PRF E + E + ++ G+ R G ++ ++ ++E+ V+ Sbjct: 295 RSFMPRFSVPEGE----TENSWFASEVKRGIASRYPNG------PSRRVIEQAEYEIRVV 344 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL L+FERFL Sbjct: 345 QEAGYAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFL 404 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP R+SMPDFDIDF + RR EVI YV KYG + VAQI+TF +++AK AL+D R L P Sbjct: 405 NPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYP 464 Query: 469 YSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLE 519 YS +RL K +P + L+AI D S R+ +D + ++ ++ LE Sbjct: 465 YSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLE 524 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 L R + HAAG+++ D P+ ++P+ + VTQF+ E GL+K DFLGL+ L Sbjct: 525 NLKRQWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNL 584 Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +L + Q + KVDL +P DD E Y LL TLG+FQL+S +RQ LE MQPD Sbjct: 585 TIIDDALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPD 644 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692 +DI A ++LYRPGP+ + Y RKN K++I IHP + +L T G+I+YQ Sbjct: 645 SFDDISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQ 704 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQV+ IAQ L+G++L EADVLR AMGKK K+E+D+Q +F +G K G S ++ + Sbjct: 705 EQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNV 764 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 L F+DY FNK+HA AY +ISY TA++K HYP E++AA +T + +K+ + Q+ R Sbjct: 765 LLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHM 824 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 I+++ P +N F I + L AIK VG I+E D PF SL DF R+ Sbjct: 825 CIKVLLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRM 884 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 LNRR + SL+ AGA D +R L+ ++ + Q + ++ Sbjct: 885 PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSD---VSLLDGLLD 941 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 + + ++ R + E+ +LG Y S HPLD + L K E ++ Sbjct: 942 EYEG-FSPPDIPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ 1000 Query: 993 NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031 + IR+A ++ S + K R+ G R + + E + Sbjct: 1001 DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040 >gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica DSM 20707] Length = 1272 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 344/1125 (30%), Positives = 547/1125 (48%), Gaps = 109/1125 (9%) Query: 6 EKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 SPS +V L VHS YS+L+G + ++DK A P IA+TD ++ F+ Sbjct: 8 PHSPSAGTRMYVPLHVHSHYSILDGMAPVEKLVDKAVACGMPGIALTDHGAMYGIKNFTN 67 Query: 61 KA-------CAAGIQ-----------------------------------PIIGCQLDID 78 A A I+ I+GC++ + Sbjct: 68 YANDKINGDKLAQIKSLRKQIKELEAEASNADEIARIEGEIKTIEQSLFKAIVGCEVYVA 127 Query: 79 -------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 +D N ++ + ++LL +GY+ LI++VS + RI Sbjct: 128 RRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW-EHGEYYKPRI 186 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L E EG+I + G I + A K L +K+ FG+ Y+ + H Sbjct: 187 DKKLLSE-HHEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPN 245 Query: 192 YDR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 D +V+++ + ++ATN++ FL+EED EAHD L+ + ++ + Sbjct: 246 SDPLGGQETYHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPI 305 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 S +R R T +LK+ EM ++F+D P+ LENT+EI + + HAP++P F E Sbjct: 306 SDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG 365 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E++ LR+ G + R + ++R+D EL VI M F GYFL+V Sbjct: 366 F---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVV 416 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI A++ + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+SMPD DI Sbjct: 417 QDFIAAARQLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDI 476 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF R V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q +RLCKLIP Sbjct: 477 DFDDKNRWRVLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIP 536 Query: 481 NDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 + V + ++ FREA + + + +++LEG HA G++I Sbjct: 537 DRAPEGVKHLTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIIS 596 Query: 536 DRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 P+S +VP+ D V Q+ K IE GLIK DFLGL+TL+++ +L + Sbjct: 597 GPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKM 656 Query: 592 RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D++A+ +LY Sbjct: 657 SYGIDLDIDTIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALY 716 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI + RK G+++I P ++P LK+T G+ +YQEQVM ++++L ++ ++ Sbjct: 717 RPGPMDNIPTFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDS 776 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKK ++EM K + +F+ G + I++ KFA Y FNKSH+ YA Sbjct: 777 DSLRKAMGKKKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYA 836 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K HYP +F+AA +T +K+ K+ ++ + +++ P VN F Sbjct: 837 WVAYQTAYLKAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSA 896 Query: 831 G-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I + L I VG + A I++ + + + DF R D +RR LE+L+ + Sbjct: 897 NKEGVIRFGLGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILS 956 Query: 889 GALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHENIFAHEK 931 GA D FG R + + +Y + +E RT ++F Sbjct: 957 GAFDNFGIEREVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSD 1016 Query: 932 GTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + L + R EQ +G Y S HPLD Y I+ + E Sbjct: 1017 PSVKLPKPLPPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIEYLCNCPASELDQF 1076 Query: 990 IR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + A +V +Q +++ + + + E F Sbjct: 1077 AELGLTQLTCAGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1121 >gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC 35310] gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC 35310] Length = 1235 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 363/1110 (32%), Positives = 554/1110 (49%), Gaps = 91/1110 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G + ++DK AD +AITD N+F EF A Sbjct: 3 DFVHLHVHTYYSILDGQSPVKRLVDKAVADGMRGLAITDHGNMFGIKEFFDYANTVNKQL 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G +PI GC++ + + + +++L GY+ LI+LVS Sbjct: 63 KADGKQPFKPIFGCEMYVARRSRFDKVK--DMGDMSGYHLIVLAKNYRGYKNLIKLVSHA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + + R L++ E LI+ + +G + R A + + +K++FG Sbjct: 121 W-EEGYYMRPRTDREELEKYH-EDLIVCSACLAGEVPRKIIAGDMAGAREAVEWYKRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ +QRH D + + LA + + +V TN+ F+ +E+ E Sbjct: 179 DDYYLEIQRHEVKDPSIRANREAYPMQQRANQVIFNLAKEYGVKVVCTNDVHFVDKENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + R + + K R EM SIFSD+PE + NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNSIFSDVPETMANTLEILNKVETYSI 298 Query: 287 VHAPILPRFIEKECDDIQK------EEENELRN--------------------KAVAGLE 320 H PI+P F E ++ EE+ LR + G E Sbjct: 299 NHDPIMPNFPIPESFGKEEDWKQKFTEEDLLREFTTDENGENPMSEEDAQKRVDHLGGYE 358 Query: 321 VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A ++ R+ FEL+V+ M F GYFLIV+DFI+ Sbjct: 359 KMYRIKFEADYLQHLAYEGAKPLYGDPLPKEVDDRIRFELHVMKTMGFPGYFLIVSDFIR 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF Sbjct: 419 AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+++V +KYGHE A IIT+GS+ K +++DV R ++P + + LCK IP Sbjct: 479 DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLERANALCKAIPERLP 538 Query: 485 HPVSLQ---AIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI + A ++ + ++ ++ LEG R HA G +I P+S Sbjct: 539 DKMKMNLNNAIKCTPELQMAEVSTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598 Query: 541 QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594 VP+ D TQ++ IE+ GLIK DFLGLKTL+ L++++ + + + Sbjct: 599 DWVPVSTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTKNI 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD TY L T+G FQ ES+GM+ L + P ED+IA+ +LYRPGP Sbjct: 659 DIDLDKIPIDDELTYKLYQEGRTIGTFQFESAGMQNYLRQLSPTKFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +DNI + RK G+E+I P+++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR Sbjct: 719 MDNIPSFIARKKGEEEITYPIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK K +D K +FI G KNG + + I+ KFA Y FNKSHAA Y+ +++ Sbjct: 779 KAMGKKKKAIVDAMKPKFIEGGKKNGYDENVLDKIWADWEKFASYAFNKSHAACYSWVAF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP EF+AA M+ D + +I K + + I + P VN F V Sbjct: 839 QTAYLKAHYPAEFMAAIMSRRKDQITEISKLMDECKSLRIATLGPDVNESYQKFGVNHKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A I++ A + + DF RVD ++NR+ ESL +G D Sbjct: 899 EIRFGLAAIKGMGDAAATAIIQEREAHGLYQDIFDFAHRVDFTQVNRKAFESLALSGGFD 958 Query: 893 CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 FG R + +D + +Y Q + ++ ++F + K + Sbjct: 959 SFGIPRESYFTANSKGELFIDTLVRYGQLYQNKKSEIEHSLFGGVDAVEIATPPIPKPEL 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002 ++ + E ++G Y S HPLD + +L+ M E + ++ A M+ Sbjct: 1019 WSNIEKLNREHDLVGIYLSAHPLDEFSIVLKSMCNTSCTELGDKAELAKKADVVFAGMIT 1078 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K TR G G+VT + + E FF Sbjct: 1079 EVKDKFTRTGKPCGFVTIEDFSGTGEIAFF 1108 >gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D] gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D] Length = 1172 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 413/1061 (38%), Positives = 609/1061 (57%), Gaps = 53/1061 (4%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SP FVHL++HS YS+++G + L++ + A D A+A+TD N F + F ++A G Sbjct: 2 NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++PI+G + I D ++LLV +GY L +L++R +L +Q + Sbjct: 62 VKPIVGADVWITNHDERDKP----------TRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111 Query: 127 QSVRICLSWLQEIGTEG------LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 I W E G E L+ L+G +G I A + +A K + ++F Sbjct: 112 GRAEIAPEWFDEPGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPG 171 Query: 181 RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Y+ LQR H G + Y Q V+LA +LP+VAT+ F++ +D+ AH+ +A Sbjct: 172 AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +++ R R T + Y K + EM ++F+D+P AL N V+IA+RC+ L++ P LPRF Sbjct: 231 LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPT 290 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ L A GLE R+ + +Y RL+FE I +M F Sbjct: 291 PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S Sbjct: 347 GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 MPDFDIDFCQ RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD Sbjct: 407 MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466 Query: 475 LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 + KLIP P V+L+ ++ E + V +LLE++Q++EG+ R+ HA G++ Sbjct: 467 VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526 Query: 534 IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFL 589 I L+ P+Y + V+Q++ +E GL+KFDFLGL TLT+L + L Sbjct: 527 IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586 Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 + S IP D + + +L T T+ +FQLES GM+ L+ +PD EDIIALV+L Sbjct: 587 DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646 Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 YRPGP+D I + RK+G+EK+ P ++P+LKET G+++YQEQVMQ+AQ++ GYSL Sbjct: 647 YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM + + F +GA+K+G+S A IF+L+ KFA YGFNKSHAAAY Sbjct: 707 ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDF 828 A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K DAR + + I+PP +N F Sbjct: 767 ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRF 826 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 D I Y L +KG G I+ A D PF L DFC RVD +++NRR +E+LV Sbjct: 827 APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945 AGA D +R QLL S+ +K ++F G +++ L Sbjct: 887 AGAFDSLNDNRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993 ++ + + E++ LGFY SGH D Y+ +R+ + Sbjct: 945 WSTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032 N +A ++V ++ + T++G + V + + E F Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044 >gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC 23769] Length = 1142 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 471/1038 (45%), Positives = 658/1038 (63%), Gaps = 26/1038 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +F+HL+VHS+YSL +GA+ + I+ + P +AITDT N+F ALEFSQ Sbjct: 1 MSHA-NFIHLRVHSAYSLSQGAIRVPEIISLAHEMRMPGVAITDTGNMFGALEFSQYCSK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPIIGCQ+ + + P +VLL G L L S +L Sbjct: 60 KGIQPIIGCQIAL--------PARCDKPGSPAEPMVLLARNETGLMNLQYLSSAGFLQ-H 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L + +GL ++TGG+ GP+ R A + L FG + V Sbjct: 111 ETDEPTVPLDILCDR-ADGLFLMTGGTRGPLFRMLAEGLEADAARLLARLHAAFGRYMAV 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH +R E ++ LA +PLVATN F + YEAHD L+ +A ++++ Sbjct: 170 ELHRHGLSVERAVEPGMIALADRAGIPLVATNECFFPRPDMYEAHDALLCIAQGRTMAEQ 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K M +F+DLPEA +NT+EIAR C+ ++ P+LP + Sbjct: 230 DRWRVTPEHWFKPPHMMRELFADLPEACDNTLEIARLCAIKVETRKPLLPVCPKVAP--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E+ LR+ A GLE RLA+ I Q Y +RL FEL++IARM F GYF+IVADF Sbjct: 287 GATEDETLRSMARDGLERRLARMDID-EQTRQTYEERLAFELDIIARMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L + + V+++ +LIPN+P Sbjct: 406 QDRRDEVIRYVRQEYGPDRVAQIITFGKLQARAAVRDVGRVLGLSFGMVNKVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ QAI + R +E R D ++ RL+EI+ +LEGL+RHASTHAAG+VIGDR L +L Sbjct: 466 AKPVTLKQAIDGEPRLQEMRDNDETLRRLMEIALQLEGLFRHASTHAAGVVIGDRELVEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++ FL + GV VDL+ +P Sbjct: 526 VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAAQFLERLGVTVDLAALP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDALTYDMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHG-EAWEPPHEEIRDILSETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD+Q+ F GA+K GI AV +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK + Sbjct: 705 AEMDQQRVIFTEGATKRGIEHDKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837 +PV FLAA M+L + EK+ Q+A + I+++PP +N DF V + I Y Sbjct: 765 HPVAFLAACMSLAREKTEKLAALRQEAERLGIKVLPPDINASDADFTVEKLPDGEYGIRY 824 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 +LAA+K VG + + ++ ++PF + D +R+D + +N+ LE+L AGA D + Sbjct: 825 ALAAVKKVGLSAMQALVAVRGERPFADMTDIAARIDPRNVNKMQLENLARAGAFDTILPN 884 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R Q +++ + + AQ + + + + T + + L R E Sbjct: 885 RAQACAAVETVLRRAQSHAQEAASGQIGLFGGGGEATAQETLRLPSVPDWPEFDRLNMEA 944 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 +GF+ + HPLD Y P++R++G+ E+ A +++A VV ++++ TR G++ Sbjct: 945 DAIGFHLTAHPLDSYGPLMRRLGVVKSTGLETAAAAGITRVKIAGCVVDRKERPTRTGNK 1004 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + WV S+ + E FF Sbjct: 1005 MAWVRLSDASGGCEVTFF 1022 >gi|89100367|ref|ZP_01173231.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89084886|gb|EAR64023.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1119 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 381/1029 (37%), Positives = 602/1029 (58%), Gaps = 40/1029 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF+HL V+S+YSLL +S+ ++ + AIA+TD N ++ ++F ++ I+P Sbjct: 2 SFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI+ K + +VLL +G+Q L+++ S + G Sbjct: 62 IIGLCADIESAGGEKGPSP----------LVLLAQNQDGFQNLLKISSTLQTKADGG--- 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I + WL+ + GLI LT G G I++ + A + + + ++FG DR Y+ Q Sbjct: 109 -IPVKWLKHYSS-GLIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQD 166 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + ++ +L+ H A N + +ED A + L+A+ + + ++R R Sbjct: 167 HGLPEEKKINRKLKELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFR 226 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + ++YLK EM +F++ EALENT++I +C+ +L++ LP++ E D Sbjct: 227 LQSDEYYLKTAEEMSEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGD----- 281 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G R + ++ +RQRL +EL +I +MKFS YFLIV DFI++ Sbjct: 282 ADTLLEELCWKGFAERYPE-------ASEVHRQRLLYELGIIKKMKFSDYFLIVWDFIKF 334 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++N I GPGRGS AGS+ +Y L ITD DP+ LLFERFLNP+R+SMPD DIDF R Sbjct: 335 SRENGILTGPGRGSAAGSMVSYVLYITDADPIEHELLFERFLNPERISMPDIDIDFPDHR 394 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEVIRYV KYG VAQIITFG+L AKAA+RD GR + +++++ +LIP+ P Sbjct: 395 RDEVIRYVAKKYGELHVAQIITFGTLAAKAAMRDTGRVFGLNAKELEQVSRLIPSRPGTN 454 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + R RL E + K+EGL RH STHAAG+VI + PL +VP+ Sbjct: 455 LKTA-YKESEQLRAFTAESSLNKRLFETALKIEGLPRHTSTHAAGVVISEFPLVNVVPIQ 513 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605 + + +TQ++M+ +E AGL+K DFLGL+ L+L++ L + G K D+ IP DD Sbjct: 514 QG-HEGVYLTQYSMEHLEAAGLLKMDFLGLRNLSLIETILSSIQRKTGKKPDIKKIPLDD 572 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY LL++ T G+FQLES GMR L+ ++P EDI+A+ +LYRPGP++NI + NRK Sbjct: 573 EKTYRLLSSGETTGVFQLESDGMRNVLKKLKPTRFEDIVAVNALYRPGPMENIPSFINRK 632 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +GKE I HP + P L++T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK K+ + Sbjct: 633 HGKEPISYPHPDLKPYLEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKQKDVL 692 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F SGA +G + A +++L+ +FA+YGFN+SHA AY+ I+YQ A++K +YP+ Sbjct: 693 DRERAHFASGAVSSGYDEKTAQEVYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKANYPL 752 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F+AA ++ N +K+ ++ ++ + + ++PPS+N+ F+ I YSLAA+KG+ Sbjct: 753 NFMAALLSQASGNEDKLAQYIRELKHLGLTLLPPSINSSGYSFQAESGGIRYSLAAVKGI 812 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 G + + + A K F+ L DFC RV +K R++LE+ V +G+ D FG R LL +L Sbjct: 813 GASVLKDVFHARRQKRFEDLFDFCIRVPAKSATRKILEAFVHSGSFDEFGEDRAVLLATL 872 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D ++A+ V+ + + E+ F+ ++ FS K + + + E+ LG Y S Sbjct: 873 DIAIEHAELVKPDE-SGQEDFFSEDE--FSIKPKYAENDPIRIEDKLQYEKEYLGLYLSD 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP+ VY +G+ + G+ IR AA + ++ +T+KG + +++ ++ + Sbjct: 930 HPVSVYAASFASLGVT---QLADMEPGSRNIRTAAYLSEVKKIRTKKGEAMAFLSLNDQS 986 Query: 1025 KEYEANFFP 1033 E EA FP Sbjct: 987 GEMEAVVFP 995 >gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99] gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans Agy99] Length = 1180 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 317/1062 (29%), Positives = 514/1062 (48%), Gaps = 41/1062 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S SFVHL H+ YS+L+GA + +L ++ PAI +TD N+F A EF A A Sbjct: 4 SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63 Query: 66 GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 G++PIIG + + + + + ++ A G + L +L Sbjct: 64 GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Q + R+ + E EG+I TG SG + + A + ++ Sbjct: 124 SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182 Query: 176 KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++FG D ++ L H +R ++++ ++P +ATN+ +++ + H+ L+ Sbjct: 183 EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 V +S +R + D Y + + D + Sbjct: 243 VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + L ++ +AGL R G QDY R ++E+ VI F Sbjct: 303 DRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDKGF 356 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +A+ +I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R Sbjct: 357 PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 416 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 S PD DIDF RR E++RY +K+G +RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 417 SAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476 Query: 472 VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K P A + + + + R DP V + + ++ LEGL Sbjct: 477 ADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLI 536 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 537 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596 Query: 583 QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +++ A RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP Sbjct: 597 GDAIENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFN 656 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKN ++ + IHP ++ L ET G+I+YQEQ+ Sbjct: 657 DIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQI 716 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M IAQ ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + Sbjct: 717 MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 776 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 777 FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 ++PP VN V+F I + L A++ VG ++ F D+ +++D Sbjct: 837 VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDI 896 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++V ESL+ AGA D G+ R L + +K ++F Sbjct: 897 SACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSGA 956 Query: 935 SDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 957 DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLATQVDTAIPAILDGDVSN 1016 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ + ++ + G + E FFP Sbjct: 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058 >gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM 18170] gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM 18170] Length = 1265 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 362/1147 (31%), Positives = 573/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YS+L+G S++ ++DK A+ IAITD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASISRLVDKAMANGMKGIAITDHGDMFGIKEFFNYVNKKNGGT 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC I +PIIGC++ + + Sbjct: 63 NGEIKDLKKKVAALESGKVESENPEADIAACKEQIEVAKKKLFKPIIGCEMYVA---RNR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 +T++ P +++L +GY LI+LVS+ + R + L++ EGL Sbjct: 120 LTDKNGKPDQGGYHLIVLAKNLKGYHNLIKLVSKAWTQG-FYMRPRTDRAELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ + G + R AE+ + +K LFG+ Y+ LQRH+ Sbjct: 178 IVCSACLGGEVPRRITAGQFAEAEEAIQWYKNLFGEDYYLELQRHKATVPRANHETYKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 ++++ A +++ LV TN+ F+ EE+ EAHD L+ ++ S + +R T + Sbjct: 238 EVVNKKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTSKDLDDPNRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R EM +IFSD+PEAL NT E+ + F HAPI+P F E ++E Sbjct: 298 MKTREEMNAIFSDVPEALVNTCEVCDKVEFYSIDHAPIMPTFSIPEEFGTEEEYRKRYSE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G R Sbjct: 358 KDLFDEFTQDENGNVVMSEADAKAKIERLGGYEKLYRIKLEADYLAKLAYEGARRRYGAD 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 + ++R+ FEL+++ M F GYFLIV DFI A+ ++ VGPGRGS AGS Sbjct: 418 L------TDEVKERIKFELHIMKTMGFPGYFLIVQDFIAAARNQLDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKLIP+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 +DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE+ GLIK DFLGLKTL++++++++ + +G+++++ IP DD TY L T Sbjct: 652 EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRHSKGIELNIDEIPIDDPATYQLYGEGQT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNVS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI-ME 855 N+ +I K + + I+++ P VN + F V I + L AIKGVG + + I +E Sbjct: 892 NITEITKLMDECKAMGIRVLGPDVNESSMKFSVNYHGDIRFGLGAIKGVGESAVQSILVE 951 Query: 856 ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + F ++ DF RV+ NR+ +E+L AG D F G R ++ Sbjct: 952 REKNGVFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDETFVEI 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E+ + + R E+ ++G Y S HP Sbjct: 1012 LVRYGNRYQVDKAAAVNSLFGGEQAVEIATPEIVHAPAWSDLERLNKERELVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y IL + + N + L +V ++ TR G G + + Sbjct: 1072 LDEYAVILENVCNARMSQLADLTPLQNHDLTLGGVVTGVREGYTRTGKPYGVAKLEDYSG 1131 Query: 1026 EYEANFF 1032 + FF Sbjct: 1132 TADFAFF 1138 >gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289] gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289] Length = 1239 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 347/1120 (30%), Positives = 533/1120 (47%), Gaps = 107/1120 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 +VHL VH+ YS+L+G + ++DK AD +A+TD +F EFS Sbjct: 3 DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +P+ GC++ + + + +++L GY+ LI+LVS+ Sbjct: 63 KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G I + + A + + ++FG Sbjct: 121 W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++ A + + ++ TN+ F +E E Sbjct: 179 DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R EM +FSD+PEAL NT+EI + Sbjct: 239 AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 H PI+P F E ++E Sbjct: 299 DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G G + + + + + FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYDGA------GKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A++ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE A IIT+ ++ K ++RDV R ++ + LCK Sbjct: 473 DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + AI R +EA D ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q VDL IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 RQTTGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D+ K +FI +NG + I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I + P +N + F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGF 892 Query: 829 KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + LAAIKG+G + A I+ + + + DF RVD +NR+ ESL Sbjct: 893 GVNSRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLA 952 Query: 887 FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939 ++G D FG R Q LD I +Y Q + + + ++F Sbjct: 953 YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPV 1012 Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------ 993 K + + E+ ++G Y S HPLD Y +L M + Sbjct: 1013 APKTEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVD 1072 Query: 994 NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 + +V + ++ + + G G+VT + E F Sbjct: 1073 EVTFGGIVTAVSERFSQKTGKPFGFVTIEDFKGAGELALF 1112 >gi|297626372|ref|YP_003688135.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922137|emb|CBL56705.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1190 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 349/1080 (32%), Positives = 550/1080 (50%), Gaps = 62/1080 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +F HL VH+ YS+L+GA S + + ++A PA+A+TD N+F A EF Q A Sbjct: 1 MA-SKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKK 59 Query: 65 AG------IQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVL 101 ++PIIG + + L + + + + + Sbjct: 60 YDGEQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTM 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L + A G L +L S + R+ + + +EG+I TG SG + Sbjct: 120 LAANATGLHNLFKLSSLAS-YEGYYMKPRMDRELIAKY-SEGIIGSTGCPSGEVQTRLRL 177 Query: 162 NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219 + A + ++ + G + Y L H + + +++LA +LPL+ATN+S + Sbjct: 178 GQFEEACEAAAAYQDILGKENYYCELMDHGVDIEHQVRADLLRLAKRLKLPLLATNDSHY 237 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278 ++E+ + HD L+ + DR R +Y+K +EM ++F L EA +NT+ IA Sbjct: 238 VTEDQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIA 297 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338 R +V + + + + + +E+ LR K GL+ + Sbjct: 298 ERIESYEEVFSYVDR--MPQFDVPAGETQESWLRKKVKIGLKKHYGDH------PSDAVM 349 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 +R++ EL VI + FS YFL+V+D A+K +PVGPGRGS AGS+ AY I IDPL Sbjct: 350 ERVETELKVIEPLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAIDPL 409 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 LLFERFLNP+R++ PD D+DF +RD+VI YV +KYG E +Q+ TF ++AKAA+ Sbjct: 410 EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAKAAV 469 Query: 459 RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509 +D R L P+S DR+ K +P D V L + D+S FR +DP V Sbjct: 470 KDANRILGYPFSLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDPDVK 529 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 R+++ +EGL R + HA ++ L LVPM++ + + + F +E+ GL+ Sbjct: 530 RVVDTGMGIEGLIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ L ++ + + + RG VDL +P DD TY L+ TLG+FQL+ M Sbjct: 590 KMDFLGLRNLGIMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDGGAM 649 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682 R L M P C +DIIA+++LYRPGP+ + + Y +RKNG+ IV IHP + D +L Sbjct: 650 RSLLRQMGPTCFDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLDEIL 709 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T +I+YQEQ+M IA+ L+GY+L AD+LRRAMGKK K +D+ + F G NG S Sbjct: 710 APTYHLIVYQEQIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDNGYS 769 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHA YA++SY TA++K +YP E+ AA +T D+ +K+ Sbjct: 770 DESMQALWDVMVPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861 + D R I+++ P VN +F I + L AI+ VG + I+EA D P Sbjct: 830 ALYLSDMRAQRIKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTDHGP 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 +F V N+R +ESL+ AGA D G+SR L+ + +++N+ N Sbjct: 890 AHDFFEFLDNVPLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRNQAN 949 Query: 922 KHENIFAHEKGTFSDKIT-----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL- 975 +++F G ++ + + + E+ +LG Y S HPL + +L Sbjct: 950 GQDDLFGDLGGGDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEHVLS 1009 Query: 976 --RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R +G+ E A G+ + M+ Q+K+T+KG+ + + + FP Sbjct: 1010 AERTIGLGQIAEQGAEADGHVEVICGMITQVQRKQTKKGAFWAIIDVEDLDASMQVLIFP 1069 >gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185] gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185] Length = 1268 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 361/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +PIIGC++ + Sbjct: 63 KGEIKDLKKRLVGIEAGSIECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + + +++L GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKQDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 ++ + G I + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 MVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ + + LV TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VKVNKYLMEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDMDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 +K R EM +F+D+PEAL NT+E+ + + HAPI+P F E ++E + Sbjct: 298 MKTREEMNELFADVPEALSNTLELLDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRQKFTE 357 Query: 314 KA-----------------VAGLEVRLAQGAIAKGYH----------------------- 333 K G G K Y Sbjct: 358 KDLYDEFTQDEHGNVVLSEEDGKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 334 -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 ++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R +++D+ I +D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDINDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 K + + IQ + P VN + F V D I + L A+KGVG + IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIMEERKKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q + L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAANSKGELFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + E A + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMSELEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482] gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus PC510] gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482] gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus PC510] Length = 1265 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 352/1147 (30%), Positives = 572/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PI GC++ + + Sbjct: 63 NSEIKDLKKRIAGLEKGTVECDNPETELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 + N+ P + +V+L +GY LI+LVS+ + + R L++ EGL Sbjct: 120 LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ T +G + R + AE+ + +K++FGD Y+ LQRH+ Sbjct: 178 IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + ++++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + + Sbjct: 238 QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R+EM +F+D+PEAL NTV+I + F HAPI+P F E ++ Sbjct: 298 MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ A+ G R + Sbjct: 358 KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 +++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS Sbjct: 417 -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ +I K +++ I P VN + F V I + L AIKGVG + + I+E Sbjct: 892 NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951 Query: 857 SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + + + DF RV+ NR+ +E+L AGA D F G R + Sbjct: 952 RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + R E+ ++G Y S HP Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y IL + E ++ ++ + +V + ++ T+ G G + + Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAEFAFF 1138 >gi|262369729|ref|ZP_06063057.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] gi|262315797|gb|EEY96836.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] Length = 1189 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 384/1037 (37%), Positives = 580/1037 (55%), Gaps = 47/1037 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A+ PA+AITD +NL +A++F K GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAKAEGMPALAITDLSNLHAAVKFYGKCLDNGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ + LL + G++ L ELVS ++ Q Sbjct: 63 MGSEVRLNDAEH---------------RVTLLAMSNVGWRNLTELVSEGFIRGQQLDIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + LI L G + + ++ Q AE L + FG+R+Y+ L R Sbjct: 108 VAKDWILEQNHD-LIALLG-MRSDVGKMLCTSNPQKAEPLLEEWIAKFGNRVYLALCRTE 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + ++LA + + +VA N+ F+ E D+EAH+ + +A V+ RP+ Sbjct: 166 RSGEDDFNYEALKLAKKYNIGVVAHNDVHFMKEIDFEAHEARVCIADGYVLGDNRRPKDY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K+ +M +F+D+P A+ENT +IA+RC+ LQ+ LP + E + Sbjct: 226 SPEQYFKSGQQMAELFADIPSAIENTYQIAKRCNVTLQLGKYFLPDYPIPEG----HTID 281 Query: 309 NELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE RL ++Y RL++E+ I +M F GYFLIV D Sbjct: 282 TYFAHLSKEGLEERLDFLYPPETRDEYWPEKRKEYDDRLEYEIGTILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWSKGNGVPVGPGRGSGAGSLVAYSLKITDLDPLPYGLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 402 CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P ++I + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGLSLEESIEAEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 522 KITDFSAVLCDADGTGRVAQYDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIQLDV 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D++ IP DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLDIAFIPLDDKDAYLIFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GYSL AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYSLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F GA+K I + A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFTEGAAKKDIDQATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 QTAW+K HYP EFLAA M+ EM N + + D R +I+++PPSVN F D++ Sbjct: 761 QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRHNDIEVLPPSVNMSIYQFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ D P+ L DFC R+D KK+N+R LE+L+ +GALD Sbjct: 821 TIVYGLGAIKGVGEAAMQSVIDSRIQDGPYRDLFDFCHRIDLKKINKRTLEALIRSGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A NR ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAADQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 939 KGEKDTLGLYLTGHPIDVYRTELKAFIPNKINELTPTRRGVTTVFAGLVVDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEA 1029 +R+ VT + E Sbjct: 995 NRMM-VTLDDGTSRIEV 1010 >gi|300784068|ref|YP_003764359.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] gi|299793582|gb|ADJ43957.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] Length = 1195 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 325/1080 (30%), Positives = 525/1080 (48%), Gaps = 60/1080 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q++ Sbjct: 1 MSND-SFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 G++PIIG + I + + + +L A Sbjct: 60 HGLKPIIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNAT 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L +L S + + R+ + E + G+I TG SG + + A Sbjct: 120 GLRNLFKLSSLASMQ-GYYRKPRMDRELIAENHS-GIIATTGCPSGEVQTRLRLGQKEAA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + +K +FG D ++ L H +R ++++ +L +ATN+S +++++ Sbjct: 178 IQAASDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 + H L+ V ++ R + D Y + + + D + Sbjct: 238 DTHSALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVES 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + ++ LR + GL+ R G + Y +R++ EL Sbjct: 298 YEDVYSHKDRLPFFEVPEGYDQGGWLREEVQRGLKWRFPDGVPD-----EYYNERIEIEL 352 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +VI F YFLIVAD I +A+K I VGPGRGS AGS+ AY L IT++DP+ LLFE Sbjct: 353 DVIIGKGFPAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFE 412 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD DIDF RR E+IRY +KYG ++VAQ+ITFG+++ KAA++D R Sbjct: 413 RFLNPERVSMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSARVH 472 Query: 466 --QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEI 514 Q Y+ D++ K P A + + + + R D + E Sbjct: 473 FGQPGYAIADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIFET 532 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ PL+ +P+++ +T ++ E GL+K DFL Sbjct: 533 ARGLEGLIRNAGVHACAVIMSCDPLTDAIPLWQRD-DGSIITGWDYPSCEAIGLLKMDFL 591 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ ++D + RGV VDL + DD ETY LL TLG+FQL+ MR L Sbjct: 592 GLRNLTVIGDAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDLLR 651 Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQG 687 M+P +DI+A+ +LYRPGP+ Y +RKN ++K+ IHP +D L +T G Sbjct: 652 RMEPTVFDDIVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADTYG 711 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-----SKNGIS 742 +I+YQEQ+M I Q ++GY++ ADVLRRAMGKK KE +DK+ E F +G G S Sbjct: 712 LIVYQEQIMHIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGGFS 771 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++ + FA Y FNKSHAAAY +ISY TA++K ++ E++AA +T DN +K Sbjct: 772 PEAIKALWDTILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKDKS 831 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861 + + R+ I+++PP VN + F + I + L A++ VG I++ + Sbjct: 832 AVYLSECRRLGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEKGK 891 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S DF + + N+RV+ESL+ AG D G++R+ ++Q ++ + +++ Sbjct: 892 YASFTDFLDKSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQEAM 951 Query: 922 KHENIFAHEKGTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 ++F + E+ +LG Y S HPLD + I Sbjct: 952 GQFDLFGFGGDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERI 1011 Query: 975 LRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 LRK K + + ++ ++ S +++ +KG T + E FFP Sbjct: 1012 LRKHAPKPIASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1071 >gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22] gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22] Length = 1268 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 360/1142 (31%), Positives = 564/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +P+IGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA] gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A] gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA] gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A] Length = 1265 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 352/1147 (30%), Positives = 572/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PI GC++ + + Sbjct: 63 NSEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 + N+ P + +V+L +GY LI+LVS+ + + R L++ EGL Sbjct: 120 LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ T +G + R + AE+ + +K++FGD Y+ LQRH+ Sbjct: 178 IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + ++++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + + Sbjct: 238 QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R+EM +F+D+PEAL NTV+I + F HAPI+P F E ++ Sbjct: 298 MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ A+ G R + Sbjct: 358 KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 +++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS Sbjct: 417 -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ +I K +++ I P VN + F V I + L AIKGVG + + I+E Sbjct: 892 NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951 Query: 857 SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + + + DF RV+ NR+ +E+L AGA D F G R + Sbjct: 952 RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + R E+ ++G Y S HP Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y IL + E ++ ++ + +V + ++ T+ G G + + Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAEFAFF 1138 >gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS] gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS] gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS] gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. MCS] gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS] gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha subunit [Mycobacterium sp. JLS] Length = 1191 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 322/1062 (30%), Positives = 520/1062 (48%), Gaps = 43/1062 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI+PI Sbjct: 12 FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71 Query: 71 IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 IG + I + + + + ++ A G + L +L S Sbjct: 72 IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 Q + R+ + E EG+I TG SG + + A + ++++FG Sbjct: 132 FEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGP 190 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 ++ L H +R ++++ +P +ATN+ +++ + + H+ L+ + Sbjct: 191 QNFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTGK 250 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 +S R + D Y + + D + + Sbjct: 251 TLSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRMPI 310 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 ++ + L ++ +AGL+ R + A++ G DY +R ++E+ VI F YFL Sbjct: 311 FPVPEGHDQASWLHHEVMAGLKRRFS--AVSGGVVPNDYIERAEYEIKVICDKGFPSYFL 368 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVAD I +AK +I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R S PD Sbjct: 369 IVADLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDI 428 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRLC 476 DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q ++ DR+ Sbjct: 429 DIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRIT 488 Query: 477 KL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527 K P A + + + + + R DP V + E ++ LEGL R+A Sbjct: 489 KALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAGV 548 Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587 HA +++ PL +P++R + +T ++ E GL+K DFLGL+ LT++ ++ Sbjct: 549 HACAVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCIE 608 Query: 588 FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 + RGV +DL + DD + Y LL TLG+FQL+ MR L MQP DI+A+ Sbjct: 609 NIKANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAV 668 Query: 647 VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQ 700 ++LYRPGP+ Y +RKNG++ I IHP ++ LK ET G+I+YQEQ+M IAQ Sbjct: 669 LALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQIMFIAQ 728 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 ++ Y++ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + FA Y Sbjct: 729 KVASYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTILPFAGYA 788 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I ++PP Sbjct: 789 FNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPPD 848 Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879 VN +F + I + L A++ VG ++ A+ + D+ +++D N+ Sbjct: 849 VNESVQNFASVGDDIRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKIDIAACNK 908 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-- 937 +V ESL+ AGA D G+ R L + +K ++F G+ +D Sbjct: 909 KVTESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDGSGADAGD 968 Query: 938 ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991 I + + E+ +LG Y SGHPL+ +L + Sbjct: 969 SAFSIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVAN 1027 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + ++ S ++ + G + E FFP Sbjct: 1028 DAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1069 >gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579] Length = 1144 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium genitalium ATCC 33030] Length = 1185 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 314/1069 (29%), Positives = 513/1069 (47%), Gaps = 48/1069 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ +S+L+G ++ + ++++ PA+ +TD N+F + F ++ Sbjct: 1 MAKKSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTD 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + + + + +L A G + L Sbjct: 61 AGIKPIIGIEAYMAPESRFNKKRVLWGTPDQKGDDVSASGAYLHQTMLAENATGLRNLFR 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQYDQALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H +R ++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + DR + Y +E + D +NT+ +A R ++ A Sbjct: 240 CVQTGKTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWAE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + LR + GL+ R +DYR R D+E++VI Sbjct: 300 HPHDRMPIATVPEGETPTTWLRKEVHRGLDERF-----EGKEVPEDYRTRADYEIDVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E++ Y +G +++AQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSAKVNFGQEG 474 Query: 471 QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 L P A + ++ + R DP V ++ E ++ LE Sbjct: 475 FQKADRINAALPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKIYETARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ PL +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ +++ RG +DL + D+ Y LL+ TLG+FQL+ GM++ L+ M+P Sbjct: 595 TVIGDAIENIEKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQELLKRMKPT 654 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ L ET G+I+YQ Sbjct: 655 GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDETYGLIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M I+Q ++ Y+ +AD R+AMGKK E + ++ E+F G NG SK ++ Sbjct: 715 EQIMNISQKVANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKAAVDALWGT 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA YA++SY TA++K +Y E++AA +T D +K + D R Sbjct: 775 IEPFASYAFNKSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAIYLADCRHL 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871 I ++PP +N F D I Y LAAI+ VG IME F + D+ + Sbjct: 835 GISVLPPDINESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFTNFSDYLDK 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927 +D N+R+ ESL+ AGA D + R LL D+ +K ++F Sbjct: 895 IDLLPCNKRITESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQFDLFSAFG 954 Query: 928 AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987 ++ T + I + + E+ +LG Y SGHPLD ++ + + + Sbjct: 955 GDQEATNAFSIEVPD-DEWEKKHKLALEREMLGLYVSGHPLDGFEEAIDAQTDTPLPKIL 1013 Query: 988 --ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 G+ + + ++ ++ ++K GS VT + + E F Sbjct: 1014 EGEMRHGDEVTIGGIISGVDRRYSKKDGSPWAIVTLEDHHGAQVEVLLF 1062 >gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis alpha710] Length = 1144 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1] gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1] gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A] Length = 1268 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 360/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84 AC A I +P+IGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGAERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597] Length = 1134 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 484/1025 (47%), Positives = 655/1025 (63%), Gaps = 51/1025 (4%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+A+TDTNN+FSALEFS A GIQPIIGCQ+D+ D G+ P P +V Sbjct: 1 MPAVAVTDTNNMFSALEFSVTASGEGIQPIIGCQVDLMYLDRQ----PGEKPKAPAP-VV 55 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LL + GY+ L+ L S +YL + Q ++ L L+E + +I LTGG GP+ Sbjct: 56 LLAQSEAGYENLMRLNSCLYLT-KPGQLPQVTLDELREF-SGDVICLTGGPDGPVGMLLQ 113 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214 A+ + +++FGDRLYV LQRH G +R E V++AY ELPLVAT Sbjct: 114 ARQRPAAQTLMDRLREMFGDRLYVELQRHPGEGGLPEKERLTERGFVEMAYAMELPLVAT 173 Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273 N+ F E YEAHD L+ +A Q+ R R+T HY K EM ++F+DLPEALEN Sbjct: 174 NDVYFPKEGMYEAHDALICIADGAYVDQQEPRRRLTAQHYFKTPEEMATLFADLPEALEN 233 Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 TVEIARRC+F+ + +E ELR A AGL+ RLA I Sbjct: 234 TVEIARRCAFMAY--------RRDPILPKFADDEVAELRRMANAGLQARLA--VIPHAVS 283 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 ++Y++RLDFEL +I M F GYFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTIT Sbjct: 284 PEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTIT 343 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L Sbjct: 344 DLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512 +KAA+RD+GR LQMPY QVDRL K+IP + PVS+ + + R R + V RLL Sbjct: 404 SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSISDALKQEERLRAEARNEEVVKRLL 463 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++EGL R+ASTHAAG+VIGDRPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFD Sbjct: 464 DYGMEVEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFD 523 Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVD------------------LSLIPFDDHETYHLLTT 614 FLGLKTLT++Q +++ + G + ++ IP DD +TY L + Sbjct: 524 FLGLKTLTVIQNAIEQIHAGGRDLHTAADGAQIYEPFPGAENQINAIPLDDAKTYELYSR 583 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T+ +FQ+ESSGM AL+ M+P CIEDI+ALV+LYRPGP++NI Y KNG+ +I S+ Sbjct: 584 AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESV 643 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 HPLID +L+ETQG+I+YQEQVMQIAQ ++GY+L AD+LRRAMGKKIKE MD ++ +F Sbjct: 644 HPLIDHILEETQGIIVYQEQVMQIAQEMAGYTLGGADLLRRAMGKKIKEAMDAERPKFEK 703 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 GA++ G+ K A +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A M Sbjct: 704 GAAEKGVEKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763 Query: 795 EMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 ++ EK+ + ++ +Q + +PP VN F V D + Y+L A+K VG R + Sbjct: 764 DIHLTEKLAIYFEEVKKQLGLPYIPPCVNRSDSAFTVKDGALVYALGALKNVGLDAMRLV 823 Query: 854 MEAS----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 +E DKPF +L DF RV+ K++ +R LE + AGA D +R ++ SLD + Sbjct: 824 VEGRRVDGEDKPFVNLFDFARRVELKRVGKRPLEMMARAGAFDVLDPNRRRVFDSLDALV 883 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +Y+ + + + + ++F + L + R E + +GFY SGHPLD Sbjct: 884 QYSAAIWEQKQSSQVSLFGDAGEDL-PEPRLSPVQDWLPAERLAEEFKAIGFYLSGHPLD 942 Query: 970 VYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y L++ IK +E G ++A +V +Q++K+ +G+R +V S+ Y Sbjct: 943 DYSAALKRKDIKTLDEVWQMASGGALIAKMAGVVAGRQERKSARGNRFAFVQISDRTGAY 1002 Query: 1028 EANFF 1032 E F Sbjct: 1003 ECTVF 1007 >gi|255311363|ref|ZP_05353933.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276] gi|255317664|ref|ZP_05358910.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276s] Length = 1237 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 369/1074 (34%), Positives = 567/1074 (52%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ E+ +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330 RC L P ++ + E E L GL + + Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLRHI 358 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49] Length = 1476 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 350/1099 (31%), Positives = 545/1099 (49%), Gaps = 92/1099 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKAC- 63 F HL HS YS+L+ S ++++ AD Q A+A+TD+ N+ A F A Sbjct: 262 FAHLHNHSQYSILQSTSSTQDLVNAAIADNQRAVALTDSGNMMGAFHFSRAVNNHNAAKL 321 Query: 64 ----------------AAGI---------QPI-----IGCQLDIDMQDNLKMTNQGKTPF 93 A +PI +GC+ + + K+ Sbjct: 322 KEYEAALAAYEAVDDTATDFEGQVPDKPEKPIPVTAIVGCEFFVC------QDHLDKSNK 375 Query: 94 PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153 IV+L GY L ++ S + + RI +++ + +I+L+GG G Sbjct: 376 DNGYQIVILAKNKAGYHNLAKMSSIAFT-EGFYYVPRIDREVIKKY-RDDIIILSGGMYG 433 Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLV 212 I AE+ LL +K+ FGD Y+ + RH D R ++ + H++ L+ Sbjct: 434 EISSKILNVGENQAEEALLWWKEEFGDDFYLEILRHGQEDEDRVNQTIIDFSRKHDVKLI 493 Query: 213 ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFS 265 A NN+ ++ +E AHD+L+ V + ++Y K++ EM IF Sbjct: 494 AANNTYYIDKESANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKLIFK 553 Query: 266 DLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317 DLPEA+ N E+ + P + E E D ++ E L++ Sbjct: 554 DLPEAIINIAEVIEKIEPYSLQRDVLLPVFDIPDEFKVAEDEIDGGKRGENAFLKHLTYI 613 Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 G + G + ++RLDFEL+VIA + GYFLI DFI+ A+K ++ VGPG Sbjct: 614 GAKE-------RYGEITDEIKERLDFELDVIANTGYPGYFLITEDFIREARKLDVSVGPG 666 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGSV AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V++YV +K Sbjct: 667 RGSAAGSVVAYCLKITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDK 726 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPA 484 YG +VAQIIT+G++ AK+++RD R L +P ++ D + KLIPN + Sbjct: 727 YGGNQVAQIITYGTMAAKSSIRDTARVLDLPLNEADHVAKLIPNMTKLAKVFGYSEKELK 786 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + ++KLEG R+ HA G++I ++ VP Sbjct: 787 QKFRSDELPKVLELIATSEGTDLTAETINQAKKLEGSVRNTGIHACGVIITPSDITNYVP 846 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603 + SDL VTQF+ +E AGL+K DFLGLKTLTL++ ++ + + D P Sbjct: 847 VSTAKDSDLYVTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDNFPL 906 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY L T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I + Sbjct: 907 DDVPTYELFQRGETVGIFQYESAGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIR 966 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RKNG+E+I P ++ LKET G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK K Sbjct: 967 RKNGEEEIEYDLPAMEEYLKETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKA 1026 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +DK K RFI A NG I++ FA Y FNKSH+ YA I+YQTA++K HY Sbjct: 1027 VLDKMKPRFIENAVGNGHDAEKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHY 1086 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P E++AA ++ M +++++ F ++ ++ ++I+ P VN F V D + + + AI Sbjct: 1087 PAEYMAAVLSNNMRDIKQVTFFMEECKRMGLEILGPDVNESFFKFSVNDRGAVRFGMGAI 1146 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGVG I+E + + S+ D R+D + N++ E+L AG D F R Q L Sbjct: 1147 KGVGANAVATIVENREEAKYKSIFDMAKRIDLRSANKKAFENLALAGGFDSFNAHRAQYL 1206 Query: 903 QS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 L+ + KYA ++++ + ++F + + + + E Sbjct: 1207 HQDADGQTFLEKVLKYANKYQESKNSSQVSLFGESSDVQIPEPEVPPCEEWGTMKKLRQE 1266 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGS 1013 + V+G Y SGHPLD +K +R + + G + +V Q ++++ G Sbjct: 1267 REVVGVYISGHPLDDFKIEMRSFANCKVADFNELEQHVGKEMSFGGIVADVQHRESKAGK 1326 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 T + YE F Sbjct: 1327 GWAIFTVEDYDDSYEFKIF 1345 >gi|15605274|ref|NP_220060.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D/UW-3/CX] gi|14194664|sp|O84549|DPO3A_CHLTR RecName: Full=DNA polymerase III subunit alpha gi|3328984|gb|AAC68147.1| DNA Pol III Alpha [Chlamydia trachomatis D/UW-3/CX] gi|297748675|gb|ADI51221.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-EC] gi|297749555|gb|ADI52233.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-LC] Length = 1237 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 374/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ E+ +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44] gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44] Length = 1177 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 403/1058 (38%), Positives = 591/1058 (55%), Gaps = 58/1058 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ I++LV + +GY + EL++R + + + + Sbjct: 62 LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 111 HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 170 RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D Y K +EM +F+D+P A+ENTVEIARRCS L++ P LP F + + Sbjct: 230 TRDQYFKTTAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+++ GLE L A + Y +RL+FEL I +M F GYFLIV+DFI+ Sbjct: 286 EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 346 WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 406 NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ AI ++ E + V L+E++Q LEG+ R+ HA G Sbjct: 466 HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 526 VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL + Sbjct: 586 RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN F Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877 + V D I Y L AIKG G I+ A PF SL DFC RVD ++ Sbjct: 826 EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R +E+L+ GA D +R L+ +LD +A N +F G+ Sbjct: 886 NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + + + + E+ +GFY +GH D + +R+ E + Sbjct: 944 STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +A ++ + ++G R+ T + + EA+ Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038 >gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2] gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2] Length = 1177 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 403/1058 (38%), Positives = 591/1058 (55%), Gaps = 58/1058 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G +N ++ A D Q A+AITD NNLF ++F ++ G++P+ Sbjct: 2 FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ I++LV + +GY + EL++R + + + + Sbjct: 62 LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 WLQE+G EGLI+L+G +GP+ A + A + +F R Y+ LQR Sbjct: 111 HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D V+LA LP+VAT+ + +DYEAH+ + +A ++ R R Sbjct: 170 RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D Y K +EM +F+D+P A+ENTVEIARRCS L++ P LP F + + Sbjct: 230 TRDQYFKTAAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R+++ GLE L A + Y +RL+FEL I +M F GYFLIV+DFI+ Sbjct: 286 EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ Sbjct: 346 WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+ D + KLIPN P Sbjct: 406 NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ AI ++ E + V L+E++Q LEG+ R+ HA G Sbjct: 466 HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI L+ P+Y+ S V ++ +E GL+KFDFLGL TLT+L+ + +F+ + Sbjct: 526 VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R IP DD+ TY L + T +FQ ES GM+Q L+ +P +ED+IAL + Sbjct: 586 RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RK+G+E + HPL++ +L ET G+++YQEQVMQ AQ+L GYSL Sbjct: 646 LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM K + F GA+KNG+S+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF +MT+EMDN +K+K +DA + I P VN F Sbjct: 766 YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877 + V D I Y L AIKG G I+ A PF SL DFC RVD ++ Sbjct: 826 EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R +E+L+ GA D +R L+ +LD +A N +F G+ Sbjct: 886 NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + + + + E+ +GFY +GH D + +R+ E + Sbjct: 944 STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +A ++ + ++G R+ T + + EA+ Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038 >gi|21672514|ref|NP_660581.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008381|sp|Q8K9S3|DPO3A_BUCAP RecName: Full=DNA polymerase III subunit alpha gi|21623135|gb|AAM67792.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 1161 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 405/1044 (38%), Positives = 614/1044 (58%), Gaps = 39/1044 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VHS YS+++G +++ K A++ITD NNL+ A++F A G++PI Sbjct: 6 FVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGLKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG + + + + LL + +GY+ LI L+SR Y ++ V Sbjct: 66 IGVTVKF----------FSELIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYV 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I WL E+ GLI+L+GG G I + + + L ++K F Y+ L R Sbjct: 116 TIEKKWLSELNN-GLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRT 174 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 +R + S V L+Y+ +P+VATN+ FL++ED++ H + +A+ + K + Sbjct: 175 YRENEEKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNN 234 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +LK EM +FSD+PEA+ N+VEI++RC+ ++ ++ + + + Sbjct: 235 YSKHQFLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIK-----SGQYFLPQFNTRKISI 289 Query: 308 ENELRNKAVAGLEVRLAQGAIAKG-YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 EN L K+ GL+ RL Y+ RLD EL +I +M F YFLIV +FIQW Sbjct: 290 ENYLIQKSNKGLKKRLESNFKKVDKEIFLKYKNRLDTELGIINKMGFPSYFLIVMEFIQW 349 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK NNIPVGPGRGSGAGS+ AY L IT++DPL F LLFERFLNP+R+S+PDFDIDFC ++ Sbjct: 350 AKDNNIPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEK 409 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI +V + YG E VAQIITFG++ AKA +RDVGR L PY ++ L KL+P DP Sbjct: 410 RDRVIEHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGIT 469 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A + +S +D + L+++S+KLEG+ R+ HA G+VI ++ P+Y Sbjct: 470 LK-DAFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVY 528 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLI 601 D + + PVTQF+ IE GL+KFDFLGL+TLT++ +++ + + ++++ I Sbjct: 529 CDEKGNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSI 588 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660 P ++ + + LL T GIFQLES GM+ ++ +QPDC EDIIAL++L+RPGP+ + +V Sbjct: 589 PLNESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVD 648 Query: 661 -YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + NRK+G E+I H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD+LR Sbjct: 649 NFINRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILR 708 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAM KK ++M +Q+ FI GA KNGI++ +A+ IF+LL KFA YGFNKSH+ AYA++SY Sbjct: 709 RAMSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSY 768 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QT W+K HYP EF+A++MT ++DN +KI ++ Q I+I+PP++N +F V Sbjct: 769 QTLWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTK 828 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L A+KG+G ++++ + F L D C R D K+ R+VLE L+ +G+ D Sbjct: 829 NIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCD 888 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSV 950 CF +R LL +++ K ++ K + + E++F K + S + Sbjct: 889 CFNKNRNYLLSLIEDAIKASKEHFKIKKFQQESLFGSFKEELNILKKNNNLLNSFSDEEK 948 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIR-GNNIRLAAMVVSKQQKK 1008 + ENE +VLG Y +GHP+D Y L+ + + + I +A +VVS + K Sbjct: 949 KLENEHKVLGLYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVAGIVVSIKTKV 1008 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T+ +RI + + E F Sbjct: 1009 TKNKNRIVILILDDSTGLLEVVIF 1032 >gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM 17565] gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM 17565] Length = 1268 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 362/1148 (31%), Positives = 568/1148 (49%), Gaps = 136/1148 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84 + A I +PIIGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECEDKEAEIADCKAKIVEAESKLFKPIIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLREGKLDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G I + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPMQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VKVNKYLMEYAQKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R EM +F+D+PEAL NT+EI + + HAPI+P F E ++E Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRAKFTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L A G + + Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS Sbjct: 418 L------SEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA Sbjct: 472 VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503 IIT+G++ K A++DV R ++P S+ DRL KL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591 Query: 504 A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 + DP V L+ ++ LEG R HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SSDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + R ++VD+ I +D TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSRAIEVDVDQIDINDPATYKLYSDGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPV 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + Sbjct: 832 KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ I K + + IQ + P VN + F V D I + L A+KGVG + IME Sbjct: 892 NITDITKLMDECKAMGIQTLGPDVNESNLKFTVNRDGNIRFGLGAVKGVGEAAVQSIMEE 951 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + PF + DF RV+ N++ +E L AG D F R Q L+ Sbjct: 952 REKNGPFTGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLET 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGH 966 + +Y + ++ ++F E + + + R E+ ++G Y S H Sbjct: 1012 LMRYGNRYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAH 1071 Query: 967 PLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD + +L + + A + G I + +V S ++ ++ G+ G + + Sbjct: 1072 PLDEFSIVLEHVCNTRMADLEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYS 1131 Query: 1025 KEYEANFF 1032 E F+ Sbjct: 1132 GSTEIPFW 1139 >gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304] Length = 1144 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RP TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPHDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae EF01-2] Length = 1186 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 404/1055 (38%), Positives = 576/1055 (54%), Gaps = 58/1055 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ + AAD QPA+AITD NNLF A++F + + G++PI Sbjct: 2 FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ + +++LV + +GY L EL++R + K Sbjct: 62 VGAEIFL-----------PGPAGAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQAL 110 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 +WL+E+ EGLI+L G +GP+ +A A + L +F R ++ LQR Sbjct: 111 CHWAWLEEL-AEGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRAG 169 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D + LA LP+VAT+ F +DYEAH+ + +A +++ R R Sbjct: 170 RADDESHVAAAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRKF 229 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T D Y K+ +EM +F+DLP AL NTVEIARRC+ L + P LP F I E Sbjct: 230 TRDQYFKSAAEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPI----E 285 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R +V GLE L + Y RL+FE+ I M F+GYFLIV DFIQ Sbjct: 286 AYFRVASVNGLEQRLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFIQ 345 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WA+ N PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 346 WARNNGCPVGPGRGSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQA 405 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR + M Y+ D + KL+P P Sbjct: 406 NRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPGI 465 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + + + + E + V ++E++QKLEGL R+ HA G Sbjct: 466 SYTLQYPPNPKKEGDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAGG 525 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL---TLLQKSLDF 588 ++I L+ P+Y+ S V+Q++ +E GL+KFDFLGL TL L ++ + Sbjct: 526 VLIAPGKLTDFCPLYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIVG 585 Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 + I DD TY L + T +FQ ES GM+ L+ +P + D+IAL + Sbjct: 586 RHKGQQDFSYDAIALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALNA 645 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + NRKNGKE ++ HPL++ +L ET G+++YQEQVMQ AQLL GYSL Sbjct: 646 LYRPGPMDLIPSFINRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSLG 705 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM + + F GA++ G+S+ A +F+L+ KFA YGFNKSHAAA Sbjct: 706 GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAAA 765 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++++Y T W+K HY EF A+MT+EMD+ +K+K +DAR+ + PP VN F Sbjct: 766 YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKMGLAFEPPDVNRGGHRF 825 Query: 829 KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877 + N+ I Y L AIKG G I+ A PF SL DFC RVD +L Sbjct: 826 EPVSNKIIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRARL 885 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933 N+R +E+L+ AGA D R L+ S+D +A N ++F A G+ Sbjct: 886 NKRTVEALIKAGAFDSIERHRAALVASIDRAFDFAAATLANV--NQGSLFDMMGADAHGS 943 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + + E+ +GFY SGH D +R+ +E + Sbjct: 944 SQQEPELVGAAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRFVRTAIDELTDSREPQ 1003 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 LA +V + ++G + E Sbjct: 1004 --VLAGIVCDLRVINGQRGKL-ALFRLDDKTGVIE 1035 >gi|114330405|ref|YP_746627.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91] gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91] Length = 1166 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 415/1052 (39%), Positives = 610/1052 (57%), Gaps = 47/1052 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FVHL++HS YS+++G + + + K PA+A+TD +NLF ++F Q AC Sbjct: 1 MLINPVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + I +++ ++LL + GY L L+SR Y + Sbjct: 61 AGIKPIAGCDVWISNENDADRP----------FRLLLLCQSFSGYLLLSRLLSRAYRENM 110 Query: 125 GKQSVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + W +E GTEGLI L+GG G ++R + + LF +R Y Sbjct: 111 QRGRAELKKDWFREGAGTEGLIALSGGEQGEVERLLLADPDAATTAA-QEWAALFPERFY 169 Query: 184 VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + +QR R + +++L +LP+VAT+ F+ ED+ AH+ + +A V+ Sbjct: 170 LEIQRCGRPDEEVTNHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGD 229 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + RPR T Y K +EM +F D+PEAL N+VEIARRCS +L++ LP F Sbjct: 230 RRRPREFTEQQYFKTAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGI 289 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + E LR++A AGL VR+ Q + Y+ RLDFE+ I +M F+GYFL Sbjct: 290 SV----EQYLRDRAQAGLVVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFL 345 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF Sbjct: 346 IVSDFISWAKQHDVPVGPGRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDF 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL Sbjct: 406 DIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P + + +A + + A+ V LLE++++LEGL R+ HA G++I Sbjct: 466 VPFELGMTL-HKAREIEPLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGK 524 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593 ++ P+Y D V+Q++ +EK GL+KFDFLGL+TLT+L +++ + Q Sbjct: 525 ITDFCPVYCADSGDAVVSQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLG 584 Query: 594 -----------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + L I +D T+ L+ T+GIFQ ES GM+ L+ +PD ED Sbjct: 585 GKDAGEQSVEENRFSLGDISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFED 644 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702 +IALV+LYRPGP+D I + RK+GK ++ + P + P+L T G++IYQEQVMQIAQ++ Sbjct: 645 LIALVALYRPGPMDLIPDFIERKHGK-RVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVI 703 Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 GYSL AD+LRRAMGKK EEM +Q+ F+ GA +NG+ + AV +F L+ KFA YGFN Sbjct: 704 GGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFN 763 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 KSHAAAYA+I+YQTA++K HYP EF+AA M+ +MD+ +K+ F +D + I I+PP +N Sbjct: 764 KSHAAAYALIAYQTAYLKAHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIAILPPDIN 823 Query: 823 TPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880 F D I Y L AIKG G I+ A F L DFC RVD + +NRR Sbjct: 824 QSAYYFVPVDRKTIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRR 883 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 +E+L+ AGA D +R L+ S+ +YA+ + T ++F + + + Sbjct: 884 TIEALIRAGAFDTVEANRAALMASVGMALEYAE--HCSLTASQVSLF-DDNADLLQQPVI 940 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + + + E+ LGFY SGHP D Y L + +A + Sbjct: 941 TEIAQWPEKEKLQYEKMSLGFYLSGHPYDSYAKELSRFIPARLGRIAPGREPQ--LIAGV 998 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + + + +R+G + VT + E + Sbjct: 999 IYAIRTQMSRRGK-MAIVTLDDGMARVELVVY 1029 >gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 1163 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 393/1045 (37%), Positives = 595/1045 (56%), Gaps = 39/1045 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PSF+HL++HS YS+++G + +++++ K + PA+A+TD NL+ ++F + A + GI+ Sbjct: 4 PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + + +L + GYQ L L+S+ Y G Sbjct: 64 PIIGADF----------LMYNPILGGELTELTILATNYIGYQCLTMLISQAYRRGYGAAG 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I WL + +GLI+L+G G + + + Q +K L + + F DR Y+ L R Sbjct: 114 PVIDRDWLIQ-HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIR 172 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246 + + V LA + LP+VATN+ F+S +D++AH++ +A+ + + + K Sbjct: 173 TGRLNEEKYLNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSY 232 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + Y+++ EM +F D+PEAL N+VEIA RC+ +++ + + Sbjct: 233 DYSSQQYIRSEQEMCELFKDIPEALANSVEIAIRCNVTIRLGE-----YFLPQFYTGNIS 287 Query: 307 EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + L A GLE RLA I + Y QRLD EL VI M F GYFLIV +F Sbjct: 288 TNSYLIKCARQGLEERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQW+K N+IPVGPGRGSGAGS+ AYAL ITDI+PL F LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IQWSKDNSIPVGPGRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 ++RD VI +V YG + V+QIITFG++ AKA +RDVGR L PYS V+++ KL+P+DP Sbjct: 408 MEKRDLVINHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDP 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A+A + R+ D +V L+++++KLEG+ R+ HA G+VI ++ Sbjct: 468 GITLD-KALAIAPQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFA 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----KVDLS 599 P+Y D P+TQF+ IE AGL+KFDFLGL+TLT++ ++L+ + + ++++ Sbjct: 527 PLYYDSEGKCPLTQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEIT 586 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +++ +L T IFQLES G+++ + +QPDC EDIIAL++L+RPGP+ + + Sbjct: 587 TIPLDDKKSFDMLLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGM 646 Query: 660 VYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V N I HP + P+L+ T G+I+YQEQVMQIA++L+GY+L EAD+ Sbjct: 647 VDNFINRKHGRETICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK +EM KQ+ F GA K GI +A+ IF+L+ KFA YGFNKSH+ AYA++ Sbjct: 707 LRRAMGKKEPKEMVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALV 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K HYP +F+A++MT ++DN++K+ + + I ++PP++N F V Sbjct: 767 SYQTLWLKAHYPSQFMASAMTADIDNIDKLAILVYECLRMGITVLPPNINISHYYFHVNK 826 Query: 833 N-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 N +I Y L AIKG+G I+EA F +L D C R +KKLNRR+LE L+ +GA Sbjct: 827 NSQIIYGLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGA 886 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVEN 947 D G R L+ L+ K A K ++F+ + + + Sbjct: 887 CDQLGSHRAALMNELETALKTADQYTKLNMIGQIDMFSTQADKQCILDYSHKSKNIQPWS 946 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQ 1006 V + EQ LG Y + HP+ Y ++ ++ I + +++S + Sbjct: 947 KQVILKGEQETLGLYLTSHPIIEYLYEIKFYTKGLRLKDIPLITCSKKITVVGLLLSIRN 1006 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 T + T + + Sbjct: 1007 IITNNNQSLSICTIDDMTGHLDIAI 1031 >gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985] gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985] Length = 1179 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 325/1065 (30%), Positives = 527/1065 (49%), Gaps = 47/1065 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL H+ YSLL+G ++ + + A + PA+ +TD N++ + EF + + G+ Sbjct: 2 SDSFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117 +PIIG + + + + + ++ A+G + L++L S Sbjct: 62 KPIIGIEAYLAPSSRFSTKREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLMKLSS 121 Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 Q + R+ L E G G+I TG SG + + A + F+++ Sbjct: 122 LASFEGQLGKWPRMDAELLAEHGR-GVIATTGCPSGEVQTKLRLGQFEAACEAAGRFQEI 180 Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 FG + Y+ L H +R +++L ++P +ATN+ ++ +E H++L+ V Sbjct: 181 FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVRQEHARGHEILLCVQ 240 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y ++M+ D + + Sbjct: 241 TGKTMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEVWEVRDR 300 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + +++ + LR++ GL+ R G + +YR R FEL+VI + F Sbjct: 301 MPVFPVPDGEDQNSWLRHEVDRGLQRRFPDGV------SDEYRARAAFELDVIKQKGFPS 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV D I +A+ I VGPGRGS AGS+ +YAL IT++DP++ LLFERFLNP+R S Sbjct: 355 YFLIVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFERFLNPERPSA 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474 PD DIDF RR E+IRY K+G +RVAQ+ITFG+++ KAAL+D R L Sbjct: 415 PDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVLHGQPGFAIAD 474 Query: 475 --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 L P A + + + + RE DP V ++ E + LEGL R+ Sbjct: 475 RITKALPPAIMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIYETALSLEGLIRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA I++ + PL + +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAIIMSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + Q RGV++DL P DD T+ LL+ TLG+FQL+ MR L M+P DI Sbjct: 595 AIENIRQNRGVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDLLRRMKPTGFGDI 654 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A++SLYRPGP+ + Y +RKNG+++I IHP ++ LK ET G+I+YQEQ+M Sbjct: 655 VAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSETYGLIVYQEQIMF 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYS+ +AD LR+AMGKK E + + E F G NG S+ +++ + FA Sbjct: 715 IAQKVAGYSMGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAAVKALWDTVLPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNKSHAA YA+++Y T ++K +YP E++AA +T D+ +K + D R+ I ++ Sbjct: 775 DYAFNKSHAACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK 876 P VN VDF I + L+ ++ VG I+ + F S D+ ++ D Sbjct: 835 APDVNKSRVDFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTSFSDYLAKADITA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 N++ +ESL+ AG D G+ R L +K ++F+ + S Sbjct: 895 CNKKAVESLIKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQYDLFSDFFESGSP 954 Query: 937 KIT------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988 ++T + + + E+ +LG Y SGHPL + L + Sbjct: 955 ELTATFEVQIPD-EEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILDGE 1013 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G N+++ ++ ++ + G+ + E FP Sbjct: 1014 VKDGTNVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058 >gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855] gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA] gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4] gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA] gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855] gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4] gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA] gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA] Length = 1265 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 352/1147 (30%), Positives = 571/1147 (49%), Gaps = 135/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59 FVHL VH+ YS+L+G S+ ++DK AD IA+TD ++F EF Sbjct: 3 DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62 Query: 60 -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84 + A +PI GC++ + + Sbjct: 63 NGEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLEAAKRKLFKPIFGCEMYVA---RRR 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 + N+ P + +V+L +GY LI+LVS+ + + R L++ EGL Sbjct: 120 LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193 I+ T +G + R + AE+ + +K++FGD Y+ LQRH+ Sbjct: 178 IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 + ++++ + + LV TN+ F+ EE+ EAHD L+ ++ + +R + + Sbjct: 238 QIANEKLIEYSRKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306 +K R+EM +F+D+PEAL NTV+I + F HAPI+P F E ++ Sbjct: 298 MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357 Query: 307 ----------------------------------------EENELRNKAVAGLEVRLAQG 326 E + L+ A+ G R + Sbjct: 358 KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385 ++ ++R+ FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS Sbjct: 417 -----VLNEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA Sbjct: 472 VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502 IIT+G++ K A++DV R ++P S+ DRLCKL+P+ AIA + A Sbjct: 532 IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLTNAIAYVPELQAAEV 591 Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558 DP + ++ ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 592 SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617 IE GLIK DFLGLKTL++++++++ + +G+ +D+ + D TY L + T Sbjct: 652 EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +G FQ ES+GM++ L ++P ED+IA+ +LYRPGP+D I + +RK+G++ I P+ Sbjct: 712 IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++ LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G Sbjct: 772 MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 KNG + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA+M+ + Sbjct: 832 KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856 N+ +I K +++ I P VN + F V I + L AIKGVG + + I+E Sbjct: 892 NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951 Query: 857 SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907 + + + DF RV+ NR+ +E+L AGA D F G R + Sbjct: 952 RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +Y + ++ ++F E + R E+ ++G Y S HP Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071 Query: 968 LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 LD Y IL + E ++ ++ + +V + ++ T+ G G + + Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVSAVREGYTKTGKPYGIAKVEDYSG 1131 Query: 1026 EYEANFF 1032 E FF Sbjct: 1132 SAEFAFF 1138 >gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568] Length = 1144 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TPD + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|239828024|ref|YP_002950648.1| DNA polymerase III subunit alpha [Geobacillus sp. WCH70] gi|239808317|gb|ACS25382.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1104 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 394/1026 (38%), Positives = 590/1026 (57%), Gaps = 41/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +++++ K Q A+A+TD N L+ A+ F + GI+P Sbjct: 3 SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIRP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ + +VLL GYQ LI++ S + Q Sbjct: 63 IIGMITDIVLEG------------ESTYPLVLLAKNETGYQHLIKISSTIQTKTQEG--- 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL GLI LT G SG I+ N A++ L +K++FGD Y+++QR Sbjct: 108 -IPEKWLWHY-RGGLIALTPGKSGQIETLLAHNEITKAKQLLERYKQIFGDDFYLSVQRG 165 Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E Q++ L+ PLVATN+ ++ +ED L+A+ V+ Sbjct: 166 ENKQQEPYEQQLIHLSNETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVIKTGMAT-- 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL + EM FSDLPEA+EN+ +IA +C + + LP++ E ++ + Sbjct: 224 DGERYLTSPEEMKKRFSDLPEAVENSRKIADQCHLHISLDTLKLPKYPVPE----KENAD 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + GL + Y +RL++EL+VI +M FS YFLIV DF+ +A+ Sbjct: 280 HYLRRLCLKGLYE-------RVSSPSDAYIKRLEYELDVIQQMDFSDYFLIVWDFMNFAR 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 K I GPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DIDF DRR+ Sbjct: 333 KKGIVTGPGRGSAAGSLVAYTLYITDIDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ +++ + K +PN + Sbjct: 393 EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDSKEMENIIKYVPNKHGITI- 451 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + FR+A A + + + I+ K+EGL RH STHAAG++I PLSQ+VP+ + Sbjct: 452 QEVYHQSFAFRQAVQASSLLKQWIAIAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607 +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ Q G +D+ IP DD + Sbjct: 512 -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIQQQTGKTIDVRSIPLDDRK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L++ T GIFQLES GM+ L+ ++P EDI+A+ +LYRPGPID I Y RK+G Sbjct: 571 TYELVSKGDTNGIFQLESDGMKHVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIKRKHG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E + +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK KE +D+ Sbjct: 631 EENVSYLHPDLAPILAPTYGVLIYQEQIMQIAANIAGFSLGKADLLRRAVAKKKKEILDQ 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ F+ G G + A ++++++ +FA+YGFN+SHA AY+++SYQ A++K HYP+ F Sbjct: 691 QRNEFVQGCIDQGYDEGFANDVYDMIVRFANYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A +T + + EK+ + +AR+ I+I+PPS+N F V +I YSLAAIK VG Sbjct: 751 YTALLTSVIGDEEKVSLYIYEARRKQIEILPPSINQSRYSFSVEHEKIRYSLAAIKHVGI 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I++ PF DFC R+ K +NR+ +ESL+ +G D FG R LL S+D Sbjct: 811 AAVKAIVQERKKGPFADFFDFCVRLFGKGINRKTIESLILSGCFDEFGIERASLLASIDV 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++AQ V +F+ S K + + + E+ +LG Y S HP Sbjct: 871 ALEHAQLVGPYVEEG---LFSD----ISLKPKYVEAPSLSLEEKLMYEKELLGVYVSPHP 923 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y+ + R G++ + +++ +V +++ +T+ G + + T S+ + E Sbjct: 924 TSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEERKTRTKTGKEMAFFTVSDESGEM 983 Query: 1028 EANFFP 1033 + FP Sbjct: 984 DVVAFP 989 >gi|76789282|ref|YP_328368.1| DNA polymerase III subunit alpha [Chlamydia trachomatis A/HAR-13] gi|76167812|gb|AAX50820.1| DNA polymerase III alpha subunit [Chlamydia trachomatis A/HAR-13] Length = 1237 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 374/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ M +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK] gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1] gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK] gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1] Length = 1183 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 321/1062 (30%), Positives = 516/1062 (48%), Gaps = 42/1062 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA + +L + + PAI +TD N+F A EF A AGI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63 Query: 70 IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + ++ A G + L +L S Sbjct: 64 IIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 Q + R+ + E EG+I TG SG + + A + ++++FG Sbjct: 124 SFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182 Query: 180 -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ L H +R ++++ +P +ATN+ +++ + + H+ L+ + Sbjct: 183 PENFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 +S +R + D Y + + D + + Sbjct: 243 KTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPKDRMP 302 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 ++ + L ++ +AGLE R + A A G +Y +R D+E+ VI F YF Sbjct: 303 VFPVPEGHDQGSWLTHEVMAGLERRFS--AAAGGQVPPEYIERADYEIKVICDKGFPAYF 360 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVAD I +AK I VGPGRGS AGS+ AYA+ IT+IDP+ LLFERFLNP+R S PD Sbjct: 361 LIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPD 420 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475 DIDF RR E++RY NK+G +RVAQ+ITFG+++ KAAL+D R Q ++ DR+ Sbjct: 421 IDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRI 480 Query: 476 CKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 K P A + + + + + R DP V + E ++ LEGL R+A Sbjct: 481 TKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAG 540 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 HA +++ PL +P+++ + +T ++ E GL+K DFLGL+ LT++ + Sbjct: 541 VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCI 600 Query: 587 DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + + RGV VDL + DD + Y LL TLG+FQL+ S MR L MQP DI+A Sbjct: 601 ENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQPTEFNDIVA 660 Query: 646 LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699 +++LYRPGP+ Y +RKNG++ I IHP ++ LK+ T G+I+YQEQ+M IA Sbjct: 661 VLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIMFIA 720 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q ++ YS+ +AD LR+AMGKK E ++ + + F G + NG S+ +++ + FA Y Sbjct: 721 QKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPFAGY 780 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSHAA Y ++SY TA++K +Y E++A +T D+ +K + D R+ I ++PP Sbjct: 781 AFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRRLGITVLPP 840 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878 VN +F + I + L A++ VG ++ + + D+ +++D Sbjct: 841 DVNESVQNFASVGDDIRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYLNKIDITACT 900 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937 ++V ESL+ AGA D G+ R L + +K ++F Sbjct: 901 KKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGDDDGDTGD 960 Query: 938 ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIR 991 I + + E+ +LG Y SGHPL+ +L + Sbjct: 961 SAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILEGAIPN 1019 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + + E FFP Sbjct: 1020 DAQVRVGGILASVNRRVNKNGLPWASAQIEDLSGGIEVLFFP 1061 >gi|224438383|ref|ZP_03659310.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313144825|ref|ZP_07807018.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313129856|gb|EFR47473.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818] Length = 1144 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 371/1082 (34%), Positives = 589/1082 (54%), Gaps = 67/1082 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + N+ +I ++A+TD N+F AL+F G+ PI Sbjct: 3 FTHLHLHTEYSLLDGANKIKNLAKRIRELGMESVAVTDHGNMFGALDFYVSMKEEGLNPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I D L + L GY+ L+ L S+ ++ + R Sbjct: 63 IGMEAYIHNGDEL-----NDKSIKQRFHLCLFAKNEVGYKNLMYLSSQAFI-NGFYYYPR 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFGD 180 I L+E +EGL+ + G ++ N+ ++A++ L +K +FG+ Sbjct: 117 INKRLLRER-SEGLVCSSACLQGEVNWQLNTNNPRNVQFGAKGYEMAKEVALEYKDIFGE 175 Query: 181 RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH D+ Q+++L ++ ++ATN++ + ++D +A ++ M VA Sbjct: 176 DFYLEIMRHGINDQLFLDEQILRLGRELDIKVIATNDTHYTFQKDAKAQEIAMCVAMGKT 235 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE- 297 ++ KDR + + + Y+K+ +M +F D+PE LENT EIA++C L + + Sbjct: 236 LNDKDRLKHSVKEFYVKSPQQMAQLFLDVPEVLENTQEIAQKCRLNLNLKNIEIKNKHTG 295 Query: 298 -------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY------------------ 332 K + + + + + + Y Sbjct: 296 EVILEHSPATPPNFKRTQEYAKKENLPQILNCELESIDDAAYFAFKCREGLKERLEHIAE 355 Query: 333 -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 Q Y+ RL+ E+ +I MKF GY LIV DF+ +AK+N IPVGPGRGS AGS+ AYAL Sbjct: 356 SKHQTYKDRLEREIEIINSMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVAYALK 415 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT+IDPL++ LLFERFLNP+R+SMPD D+DF Q+RR E+I YV N YG VAQ++TF S Sbjct: 416 ITNIDPLKYDLLFERFLNPERVSMPDIDMDFSQERRQELIEYVSNTYGKFNVAQVVTFNS 475 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSRFREA 501 L AK +RDV R L MP D KLIPN+ ++ QA + + +E Sbjct: 476 LLAKGVIRDVARVLDMPLKDADGFAKLIPNELGITLTKQAGKDGKEKDGAWEKEPKIKEL 535 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNM 560 +P ++ + + LEGL R+ HAA IVI + L VP+Y + + + Q++M Sbjct: 536 VERNPLAKQVWDYAVLLEGLKRNTGLHAAAIVIDSNDELWNKVPLYTNDKMNGVAVQYSM 595 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLG 619 W+E LIKFDFLGLKTL ++ ++ + +R V +D S + +D + Y + + TLG Sbjct: 596 NWLEPVDLIKFDFLGLKTLDVISDAIKLVKKRYGVDIDFSTMDMEDSKVYETIQSGSTLG 655 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677 +FQ+ES GM+ + ++P EDIIA+++LYRPGP+++ + + NRK+G I Sbjct: 656 LFQIESEGMQALAKRLKPSNFEDIIAMLALYRPGPMESGMLDDFVNRKHGLASITYAFNA 715 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 ++P+LK T GVI+YQEQVMQI Q + G+SL AD++RRAMGKK +EM + K+ F GA Sbjct: 716 LEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADGAE 775 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 K G ++T A +++EL+ KFA YGFNKSH+AAYA+I+YQTA++KT+Y EF+AA +T E Sbjct: 776 KQGYNRTKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLTSETR 835 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHI 853 VE + K+ + + I+I+PP +N DF VG+ +I + L+AIKG+G + +I Sbjct: 836 KVESVAKYINEVKSLGIEIIPPHINISENDFGVGEFDGVKKIIFGLSAIKGLGESPIENI 895 Query: 854 M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + + + + ++EDF +RVD K+ +R LE L+ +G LD G+SR +L+++D + Sbjct: 896 ITDREKNGEYKNVEDFIARVDFSKMTKRSLEPLIKSGGLDGLGFSRHTMLENIDLLCDKG 955 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + +K ++F + + ++ + + E +G Y SGHPLD +K Sbjct: 956 REKDKAHEMMSNSLFGEGGVEINVHLPIQDKPEYDIRTLLDYEYECMGIYISGHPLDDFK 1015 Query: 973 PILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEAN 1030 L K+ G+ E + L ++ ++K ++K G G + F + + E Sbjct: 1016 EKLDKIKGVVKSVELEDLELNSTCMLVGKILDIKRKISKKTGKPFGTIDFLDYGGKIEFM 1075 Query: 1031 FF 1032 F Sbjct: 1076 VF 1077 >gi|308752748|gb|ADO46231.1| DNA polymerase III, alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 1158 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 388/1067 (36%), Positives = 578/1067 (54%), Gaps = 71/1067 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF LEF + Sbjct: 1 MLTMAEFVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 GI+PIIG + + ++L+ G + L++L S Y Sbjct: 61 EGIKPIIGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQ 120 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + RI L + EGLI +T G + A + FK LFG+ Sbjct: 121 -EGFYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGEN 178 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 LY+ LQ ++ ++ ++ ++ +A + L+ATN+S +L+ +D AH VLMAV + Sbjct: 179 LYLELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTL 238 Query: 241 SQKDR----PRVTPDHYLKNRSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPIL 292 + + + E+ F EAL+NT+E+A + ++ Sbjct: 239 MEIKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLE--N 296 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 ++ + D K LR+ AV GL R+ QG + +Y RL++EL V+ RM Sbjct: 297 RGYLFPKYDTEDKTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMG 353 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFLIV DFI WAK +IPVGPGRGS AGS+ A++L ITDIDP++ LLFERFLNP+R Sbjct: 354 FEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPER 413 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+ ++AK LRDV RAL +PYS Sbjct: 414 ISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVA 473 Query: 473 DRLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDR 510 D L KLIP +SL+ + +FR+ +P + Sbjct: 474 DSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKT 533 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 L+EI+ KLEGL RH S HAAG+VI PL + +P+Y D + + TQF+M +E+ GLIK Sbjct: 534 LVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIK 592 Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 DFLGLKTLT L++ + +R ++ +P DD Y LL T G+FQLES GM+ Sbjct: 593 MDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMK 652 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687 L+ ++PD +DI+A+++LYRPGP+ + + Y NRK+GKE++ I P ++P+LK+T G Sbjct: 653 NLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYG 712 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747 +I+YQEQVM+I+Q+L+G++ +AD LR+A+GKK KE M + KE+FI GA + G ++ + Sbjct: 713 IIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVI 772 Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807 ++ + +FA Y FNKSH+ AY ISY TA+MK HYP EF ++ E + + I + Sbjct: 773 KLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSDKKFI-NLIK 831 Query: 808 DARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 DA+ F +I+ P +N VDF + +I + LA IKGVG TAR I+EA + + L Sbjct: 832 DAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLG 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DF +D +K+N+RVLE+L+ AGA D G SR + + Y K ++ Sbjct: 891 DFLKSIDQRKVNKRVLEALIKAGAFDFTGESR-------EKLLSYMDKASKGGVLPLGDL 943 Query: 927 FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 F + D + E+ VLG Y S HP+D ++ +L G + E Sbjct: 944 FGTKVEQKVDP--------------LKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEE 987 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + ++ +V + KKT+ G+ + + A FP Sbjct: 988 LEELQEGTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1034 >gi|255348923|ref|ZP_05380930.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70] gi|255503463|ref|ZP_05381853.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70s] gi|255507141|ref|ZP_05382780.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D(s)2923] gi|289525590|emb|CBJ15068.1| DNA polymerase III alpha subunit [Chlamydia trachomatis Sweden2] gi|296435150|gb|ADH17328.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/150] gi|296438870|gb|ADH21023.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/11023] Length = 1237 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 374/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ E+ +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|166154760|ref|YP_001654878.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 434/Bu] gi|166155635|ref|YP_001653890.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336034|ref|ZP_07224278.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2tet1] gi|165930748|emb|CAP04245.1| DNA polymerase III alpha subunit [Chlamydia trachomatis 434/Bu] gi|165931623|emb|CAP07199.1| DNA polymerase III alpha subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1237 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 375/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 VL+ A ++ + + K + + + Y K+ EM +F+ PE + NT +A Sbjct: 239 VLLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEMAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D ++ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELKQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length = 1178 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 332/1063 (31%), Positives = 530/1063 (49%), Gaps = 48/1063 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL H+ YS+L+GA ++ + + AI +TD N+F A EF A GI+P Sbjct: 4 SFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGIKP 63 Query: 70 IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 IIG + I + + + + ++ A G + L +L S Sbjct: 64 IIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + Q + R+ + E EG+I TG SG + A + ++++FG Sbjct: 124 SIEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEIFG 182 Query: 180 -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + Y+ L H ++ S ++ + + + TN+ +++ E+H+ L+ + Sbjct: 183 KENFYLELMEHGLEIEQRVRSGLLDVGRKLGIKPLVTNDCHYVTRGHAESHEALLCLQTG 242 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRF 295 +S R + D Y +E + D ++T+EI R +V+ Sbjct: 243 KTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHHDRMP 302 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 I D +E L + +AGL+ R G +Y R ++EL+VI +M F Sbjct: 303 IFPVPDGF--TQETWLAREVMAGLDRRF------DGNPPGEYVTRAEYELSVINQMGFPA 354 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL+V D I A + I VGPGRGS AGS+ AYAL IT+IDP+ LLFERFLNP+R+SM Sbjct: 355 YFLVVGDLIAHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERVSM 414 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVD 473 PD DIDF RR E+I Y K+GH++VAQ+ITFG+++ KAA++D R Q ++ D Sbjct: 415 PDIDIDFDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474 Query: 474 R---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 R + K IP + A+ + R DP V R+ + + LEGL R+ Sbjct: 475 RITKALPPPIMAKDIPVWGITDPEHERYAEATEVRTLIETDPDVKRIYDTALGLEGLVRN 534 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 A HA +++ PL+ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594 Query: 585 SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + RG+ +DL +P +D ++Y LL TLG+FQL+ S MR L M+P EDI Sbjct: 595 AIENIKTNRGIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRDLLRRMEPTGFEDI 654 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697 +A+++LYRPGP+ + Y +RKNG++++ IHP ++ LK ET G+I+YQEQ+MQ Sbjct: 655 VAVLALYRPGPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAETFGLIVYQEQIMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK KE +D+ + F G NG S+ +++ + FA Sbjct: 715 IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQEAITALWDTVLPFA 774 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 Y FNKSHAA Y ++S+ TA++K +YP E++A +T D+ +K + D R+ I ++ Sbjct: 775 GYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVL 834 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876 PP VN DF I + LAAI+ VG+ I+ A + + + D+ ++D + Sbjct: 835 PPDVNASRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYTNFSDYLGKIDVQA 894 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 +++V ESL+ AG D G+ R L +K ++F Sbjct: 895 CSKKVTESLIKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQFDLFGGVGDDGGG 954 Query: 937 KITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990 + + + E+ +LG Y SGHPL + + + Sbjct: 955 ASDVFAVKVPEDEWETKHKLALERDMLGLYVSGHPLAGLEHAIAAQTDTSITSLLEGSVA 1014 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G I + ++ S ++ +KG V + E FFP Sbjct: 1015 DGAQITIGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFFP 1057 >gi|254804357|ref|YP_003082578.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14] gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14] Length = 1144 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|237804896|ref|YP_002889050.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/TZ1A828/OT] gi|231273196|emb|CAX10109.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/TZ1A828/OT] Length = 1237 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 374/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ M +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIIPKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVRITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC 2a] gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens SD CC 1b] gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC 2a] gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens SD CC 1b] Length = 1268 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 358/1142 (31%), Positives = 563/1142 (49%), Gaps = 124/1142 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60 FVHL VH+ YSLL+G S+ ++DK + IA+TD N+F EF+ Sbjct: 3 DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62 Query: 61 -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84 + A I +P+IGC++ + Sbjct: 63 KGEVKDLKKRIAGIEAGTIECADKEAEIATCKAKIVEAENKLFKPVIGCEMYVA---RRT 119 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144 M + P + +++L +GY LI+LVS + R S L++ EGL Sbjct: 120 MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193 I+ + G + + AE+ + +K LFGD Y+ +QRH+ Sbjct: 178 IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253 +++ A + L+ TN+ F+ EE+ EAHD L+ ++ + R T + Sbjct: 238 VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298 +K R EM +F+D+PEAL NT+EI + + HAPI+P F Sbjct: 298 MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357 Query: 299 -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332 + + EE+ + + K + G + I Sbjct: 358 KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391 +++ ++R++FEL ++ M F GYFLIV DFI A+K + VGPGRGS AGS AY L Sbjct: 418 LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT IDP+++ LLFERFLNPDR+S+PD D+DF D R EV+R+V NKYG E+VA IIT+G+ Sbjct: 478 ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508 + K A++DV R ++P S+ DRL KL+P+ AI + A + DP V Sbjct: 538 MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597 Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564 ++ ++ LEG R HA G +I ++ VP+ + + VTQ+ IE Sbjct: 598 RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 GLIK DFLGLKTL++++++++ + R V+VD+ I D TY L + T+G FQ Sbjct: 658 DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES+GM++ L +QP ED+IA+ +LYRPGP+D I + +RK+G++ I P+++ LK Sbjct: 718 ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 +T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+++++D K +FI G KNG Sbjct: 778 DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA M+ + N+ I Sbjct: 838 KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 K + + IQ + P VN + F V D I + L A+KGVG IME + P Sbjct: 898 KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913 F + DF RV+ N++ +E L AG D F R Q L+ + +Y Sbjct: 958 FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + ++ ++F E + + + R E+ ++G Y S HPLD + Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077 Query: 973 PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +L + + G I + +V S ++ ++ G+ G + + E Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137 Query: 1031 FF 1032 F+ Sbjct: 1138 FW 1139 >gi|302525308|ref|ZP_07277650.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302434203|gb|EFL06019.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1195 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 336/1082 (31%), Positives = 528/1082 (48%), Gaps = 64/1082 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL VH+ YS+L+GA + + + A PA+ +TD N++ EF Q + Sbjct: 1 MSND-SFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107 GI+PIIG + + + + + ++ A Sbjct: 60 HGIKPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNAT 119 Query: 108 GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 G + L +L S + + R+ + E EG+I TG SG + + A Sbjct: 120 GLRNLFKLSSLASIQ-GYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAA 177 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + +K +FG Y+ L H +R ++++ +LP +ATN+S +++++ Sbjct: 178 IQAASDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQA 237 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285 + H L+ V ++ R + D Y ++ + + D + Sbjct: 238 DTHSALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVES 297 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + E LR++ GL+ R G Y +R D+EL Sbjct: 298 YEDVYAHKDRMPVFDVPEGHTEATWLRHQVAEGLKWRFPDG------IPDGYEERCDYEL 351 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 NVI F YFLIVAD IQ A++ I VGPGRGS AG++ AYAL IT++DP+ LLFE Sbjct: 352 NVIEGKGFPAYFLIVADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLLFE 411 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+RMSMPD DIDF RR E+IRY +KYG +RVAQ+ITFG+++ KAA++D R Sbjct: 412 RFLNPERMSMPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSARVH 471 Query: 466 --QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEI 514 Q YS D++ K P A + + A+ + R D + E Sbjct: 472 FGQPGYSIADKISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIFET 531 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEGL R+A HA +++ PL+ +P+++ +T ++ E GL+K DFL Sbjct: 532 ARGLEGLIRNAGVHACAVIMSSEPLTDAIPVWQRD-DGSIITGWDYPSCEAIGLLKMDFL 590 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+ LT++ +L+ + RG ++DL + FDD E Y LL TLG+FQL+ MR L Sbjct: 591 GLRNLTVIGDALENIKANRGEEIDLDRLGFDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650 Query: 634 GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQG 687 M P EDIIA+++LYRPGP+ Y +RKN +++I IHP ++ L ET G Sbjct: 651 RMLPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSETYG 710 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----GIS 742 +I+YQEQ+MQIAQ ++GY++ AD LRRAMGKK KE ++K+ E F G + G S Sbjct: 711 LIVYQEQIMQIAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMKSSPLVEGGFS 770 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++ + FA Y FNKSHAAAY +I+Y TA++K +Y E++AA +T DN +K Sbjct: 771 PEAVKALWDTILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKDKS 830 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861 + + R+ I+++PP VN + F N I + L A++ VG I++ + Sbjct: 831 AIYLSECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGK 890 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S DF + + N+RV+ESL+ AGA D G++R+ ++Q ++ + +++ Sbjct: 891 YSSFTDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAM 950 Query: 922 KHENIFAHEKGTFSDKITLE----------KFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++F G E+ +LG Y S HPLD Sbjct: 951 GQFDLFGSFGGGDDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGA 1010 Query: 972 KPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + ILRK K +A + ++ ++ S +++ +KG T + E Sbjct: 1011 ERILRKHAPKPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAAIEVL 1070 Query: 1031 FF 1032 FF Sbjct: 1071 FF 1072 >gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 1287 Score = 700 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 346/1125 (30%), Positives = 547/1125 (48%), Gaps = 109/1125 (9%) Query: 6 EKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 SPS +V L VHS YS+L+G + ILDK A P IA+TD ++ F+ Sbjct: 22 PHSPSAGTRMYVPLHVHSHYSILDGMAPVEKILDKAVACGMPGIALTDHGAMYGIKNFTN 81 Query: 61 KA-------CAAGIQ-----------------------------------PIIGCQLDID 78 A A I+ I+GC++ + Sbjct: 82 YANDKINGDKLAQIKSLRKQIKELEADASNADEIARIKGEIKTIEQSLFKAIVGCEVYVA 141 Query: 79 -------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 +D N ++ + ++LL +GY+ LI++VS + RI Sbjct: 142 RRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW-EHGEYYKPRI 200 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L E EG+I + G I + A K L +K+ FG+ Y+ + H Sbjct: 201 DKKLLSE-HHEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPN 259 Query: 192 YDR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 D +V+++ + ++ATN++ FL+EED EAHD L+ + ++ + Sbjct: 260 SDPLGGQETYHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPI 319 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 S +R R T +LK+ EM ++F+D P+ LENT+EI + + HAP++P F E Sbjct: 320 SDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG 379 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E++ LR+ G + R + ++R+D EL VI M F GYFL+V Sbjct: 380 F---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVV 430 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI A++ + VGPGRGS AGS AY L+IT I+P+++ LLFERFLNPDR+SMPD DI Sbjct: 431 QDFIAAARQLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDI 490 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF R V+ +V NKYG + V+ IIT ++ K A++ V R ++P Q +RLCKLIP Sbjct: 491 DFDDKNRWRVLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIP 550 Query: 481 NDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 + V + ++ FREA + + + +++LEG HA G++I Sbjct: 551 DRAPEGVKHLTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIIS 610 Query: 536 DRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 P+S +VP+ D V Q+ K IE GLIK DFLGL+TL+++ +L + Sbjct: 611 GPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKM 670 Query: 592 RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 D+ IP DD +T+ L + T+G FQ ES GMR+ L+ ++P +D++A+ +LY Sbjct: 671 SYGIDLDIDTIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALY 730 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+DNI + RK G+++I P ++P LK+T G+ +YQEQVM ++++L ++ ++ Sbjct: 731 RPGPMDNIPTFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDS 790 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D LR+AMGKK ++EM K + +F+ G + I++ KFA Y FNKSH+ YA Sbjct: 791 DSLRKAMGKKKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYA 850 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++YQTA++K HYP +F+AA +T +K+ K+ ++ + +++ P VN F Sbjct: 851 WVAYQTAYLKAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSA 910 Query: 831 G-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I + L I VG + A I++ + + + DF R D +RR LE+L+ + Sbjct: 911 NKEGVIRFGLGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILS 970 Query: 889 GALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHENIFAHEK 931 GA D FG R + + +Y + +E RT ++F Sbjct: 971 GAFDNFGIEREVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSD 1030 Query: 932 GTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + L + R EQ +G Y S HPLD Y I+ + E Sbjct: 1031 PSVKLPKPLPPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIENLCNCPASELDQF 1090 Query: 990 IR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + A +V +Q +++ + + + E F Sbjct: 1091 AELGLTQLTCAGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1135 >gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945] Length = 1144 Score = 700 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC 43768] Length = 1144 Score = 700 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 582/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPECPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMI 1014 >gi|237802974|ref|YP_002888168.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/Jali20/OT] gi|231274208|emb|CAX11002.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/Jali20/OT] Length = 1237 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 375/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+N + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSINKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ M +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG DCF ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|288819165|ref|YP_003433513.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288788565|dbj|BAI70312.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 1155 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 388/1061 (36%), Positives = 577/1061 (54%), Gaps = 71/1061 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF LEF + GI+PI Sbjct: 4 FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 IG + + ++L+ G + L++L S Y + Sbjct: 64 IGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQ-EGFYY 122 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 RI L + EGLI +T G + A + FK LFG+ LY+ LQ Sbjct: 123 KPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYLELQ 181 Query: 188 RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 ++ ++ ++ ++ +A + L+ATN+S +L+ +D AH VLMAV + + + Sbjct: 182 SNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLMEIKQE 241 Query: 246 ---PRVTPDHYLKNRSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + E+ F EAL+NT+E+A + ++ ++ Sbjct: 242 SAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLE--NRGYLFP 299 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + D K LR+ AV GL R+ QG + +Y RL++EL V+ RM F GYFL Sbjct: 300 KYDTEDKTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMGFEGYFL 356 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV DFI WAK +IPVGPGRGS AGS+ A++L ITDIDP++ LLFERFLNP+R+SMPD Sbjct: 357 IVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPERISMPDI 416 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC ++RD+VI YV++KYG E VAQIIT+ ++AK LRDV RAL +PYS D L KL Sbjct: 417 DVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVADSLAKL 476 Query: 479 IPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQ 516 IP +SL+ + +FR+ +P + L+EI+ Sbjct: 477 IPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKTLVEIAL 536 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 KLEGL RH S HAAG+VI PL + +P+Y D + + TQF+M +E+ GLIK DFLGL Sbjct: 537 KLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIKMDFLGL 595 Query: 577 KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 KTLT L++ + +R ++ +P DD Y LL T G+FQLES GM+ L+ + Sbjct: 596 KTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMKNLLKRL 655 Query: 636 QPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD +DI+A+++LYRPGP+ + + Y NRK+GKE++ I P ++P+LK+T G+I+YQE Sbjct: 656 EPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYGIIVYQE 715 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM+I+Q+L+G++ +AD LR+A+GKK KE M + KE+FI GA + G ++ + ++ + Sbjct: 716 QVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVIKLWNDI 775 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 +FA Y FNKSH+ AY ISY TA+MK HYP EF ++ E + + I +DA+ F Sbjct: 776 EEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSDKKFI-NLIKDAKSFG 834 Query: 814 IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 +I+ P +N VDF + +I + LA IKGVG TAR I+EA + + L DF + Sbjct: 835 FEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLGDFLKSI 893 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 D +K+N+RVLE+L+ AGA D G SR + + Y K ++F + Sbjct: 894 DQRKVNKRVLEALIKAGAFDFTGESR-------EKLLSYMDKASKGGVLPLGDLFGTKVE 946 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 D + E+ VLG Y S HP+D ++ +L G + E + ++ Sbjct: 947 QKVDP--------------LKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEELEELQE 990 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V + KKT+ G+ + + A FP Sbjct: 991 GTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1031 >gi|262376213|ref|ZP_06069443.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145] gi|262308814|gb|EEY89947.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145] Length = 1190 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 384/1037 (37%), Positives = 580/1037 (55%), Gaps = 47/1037 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ +Q PA+A+TD +NL +A++F K + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ ++ + LL T G++ L ELVS ++ Q Sbjct: 63 LGSEIRLNDAEH---------------RMTLLAMTNTGWRNLTELVSEGFISGQQLDIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + W+ E +I L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKQWILNQP-EDMIALLG-MHSDVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTN 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D + V+LA + + +VA N+ F++ +DYEAH+ + +A V+ RP+ Sbjct: 166 RPDEDNFILEAVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K+ EM ++FSD+P A+ENT IA+RC+ LQ+ LP + E + Sbjct: 226 SPEQYFKSAEEMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEG----HTID 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE Q + Y +R+++E+N+I M F GYFLIV D Sbjct: 282 TFFAHLSKEGLEERLNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWSKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 402 CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P L+++ + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGLSLLESLEAEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 522 KITDFSAVMCDADGTGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKADK 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ I +D + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLDIAYIQLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ FI GASK I + A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833 QTAW+K HYP EFL+A +T EM N + + D R+ N++++PPSVN F + + Sbjct: 761 QTAWLKAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQ 820 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ A + PF L DFC R+D KK+N+R LE+L+ +GALD Sbjct: 821 TIVYGLGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR ++F + VR Sbjct: 881 CLGIDRADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPSK--PVKPWADEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 939 KGEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRRGVTTVFAGLVVDIANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEA 1029 +R+ +T + E Sbjct: 995 NRMM-MTLDDGTARIEI 1010 >gi|256423694|ref|YP_003124347.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] gi|256038602|gb|ACU62146.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] Length = 1214 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 356/1095 (32%), Positives = 555/1095 (50%), Gaps = 87/1095 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62 F HL VH+ YSLL+GA + ++ K A QPA+AITD N+F A +F +A Sbjct: 3 FSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNRLNPE 62 Query: 63 ----CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 ++PI+GC+ + +N + VLL EGY+ LI+L S Sbjct: 63 DPKDKRLKVKPIVGCEFYVV--ENRFKRAFTREEKDIRNHQVLLAKNDEGYRNLIKLCSL 120 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 Y+ + RI + + +GLI T + RA + E+ + +F Sbjct: 121 GYIEGLYGKYPRIDKELILQYH-KGLIATTCCLGASVPRAILKKGEEAGEEEFKWWLDIF 179 Query: 179 GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+ YV LQRH ++ +++ A H + ++A+N+S ++ + D AHD+L+ + Sbjct: 180 GEDYYVELQRHGIPEQEKVNESLIKFASKHNVKIIASNDSHYVDQADANAHDILLCINTG 239 Query: 238 TVVSQKDRP---------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282 S Y K EM ++F DLP+A++NT EI + Sbjct: 240 EKKSTPTMKDFSDDDVSMKNKRFAFYNDQFYFKTTEEMTALFQDLPQAIDNTNEIVDKVE 299 Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342 + +LP F ++ LR+ + G + +R++ Sbjct: 300 LLDLKRDILLPNFPIPPPF---LTQDQYLRHITMEGAHK-------KYAEVTAEVEERIN 349 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 FEL+VI M F+GYFLIV+DFI+ + + +GPGRGS AGS AY + IT+IDP++++L Sbjct: 350 FELSVIENMGFAGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIGITNIDPIKYNL 409 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R SMPD D DF + R +VI YV NKYG +VAQIIT+G++ AK +++DV Sbjct: 410 LFERFLNPERKSMPDIDTDFDDEGRQKVIDYVVNKYGKNQVAQIITYGTMAAKMSIKDVA 469 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------------------IADDSRFREA 501 R + +P + + L K++P+ P + + + R RE Sbjct: 470 RVMDLPLVESNMLAKMVPDKPGIQLDRIFNAPIDEGEKSLAEKEGLGPEDLENVKRLREL 529 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 +L + LEG R+ HAAGI+I + L L+P+ SDL VTQF Sbjct: 530 IKGQDLQGEVLREACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKDSDLLVTQFEGS 589 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 IE AG+IK DFLGLKTLT+++ +L+ + G+ + + IP DD +TY L T Sbjct: 590 IIESAGVIKMDFLGLKTLTIIKGALELIRTNHGIDISIDDIPLDDAKTYELYQKGETNAT 649 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES+GM++ L ++PD +D+IA+ +LYRPGP++ I ++ RK+G E+ V ++ Sbjct: 650 FQFESAGMQKYLRELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLEETVYDLAEMEE 709 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 L +T G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK K +DK K++F+ G + NG Sbjct: 710 YLNDTYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMKKQFMEGCAANG 769 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + ++ FA Y FNKSH+ YA ++YQTA++K HYP E++AA + N+E Sbjct: 770 HDLKVCDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLN-NASNIE 828 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859 KI F ++A++ I ++PP VN F V +I + LA +KGVG +I+E Sbjct: 829 KITFFMEEAKRMGIDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEAAVENILEERQK 888 Query: 860 KP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ--------SLDNIQ 909 + ++ + RV+ + +N++ LE+L +GA DCF R Q LD I Sbjct: 889 GSNYKNIFEMIKRVNQRAVNKKSLEALAMSGAFDCFPELHRAQYFHKPDNDNTTGLDKIV 948 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 K+ Q V ++F + + + ++ NE+ V G Y SGHPLD Sbjct: 949 KFGQQVSAGAATTMSSLFGADDMPEVEPPKIPPCDPWPLILKLNNEREVTGIYISGHPLD 1008 Query: 970 VYKPILRKMGIKGYEESVATI------------RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 Y+ R + +E V R N RLA V Q++ +R + G Sbjct: 1009 DYRFESRYYNMNTVQELVEYQADLQAPGNAKSGRERNFRLAVYVTGAQERISRNNRQFGI 1068 Query: 1018 VTFSEPAKEYEANFF 1032 +T + + ++E + Sbjct: 1069 MTIEDYSGKFEFALW 1083 >gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594] Length = 1144 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|121634255|ref|YP_974500.1| DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18] gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18] gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136] Length = 1144 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] Length = 1188 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 325/1072 (30%), Positives = 519/1072 (48%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F +K A Sbjct: 1 MSNS-SFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + + + ++ G + L Sbjct: 60 EGIKPIIGIETYMAPDSRFNKKRVLWGEPHQKRDDVSASGAYLHQTMIAENVTGLKNLFH 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + Sbjct: 120 LSSMASYEGQLGKWPRMDAELISE-HAEGIIATTGCPSGDVQTRLRLGQFDEALAAAARW 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H +R Q++++ LP + TN+ ++ + H+ ++ Sbjct: 179 QDIYGKDNFFLELMDHGLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAML 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290 V + DR + D Y + + D A +NT+ IA R ++ P Sbjct: 239 CVQTGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEP 298 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + + L ++ + GL+ R Q+Y R +E+ VI Sbjct: 299 HTHDRMPIADVPEGETPTSWLTHEVMEGLKRRFPD-----SEVPQEYIDRAKYEIEVIDF 353 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYA+TIT+IDP+ LLFERFLNP Sbjct: 354 KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFLNP 413 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R S PD DIDF RR E+I Y ++G +++AQ+ITFG+++ K AL+D R Q Sbjct: 414 ERPSAPDIDIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQPG 473 Query: 469 YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 Y DR+ K L P ++ + + R+ DP V ++ E ++ LE Sbjct: 474 YQIADRVTKLLPPAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETARGLE 533 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ PL + +PM++ + +T + E GL+K DFLGL+ L Sbjct: 534 GVVRQAGVHACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLGLRNL 593 Query: 580 TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T+L +L+ + + RG V L + +D E Y LL TLG+FQL+ GMR+ L M+P Sbjct: 594 TVLNDALENIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRRMKPT 653 Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692 +DI+A ++LYRPGP+ + Y +RKNGK+ I IHP + L+ +T G+I+YQ Sbjct: 654 GFDDIVAALALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGLIVYQ 713 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M+I+Q ++ YS EAD R+AMGKK E + KQ +F G NG S+ ++ Sbjct: 714 EQIMKISQKVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDALWGT 773 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y+V+SY TA+MKT Y E++AA +T DN +K + D R Sbjct: 774 IEPFASYAFNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLADCRHL 833 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN +F+ + + + L A++ VG I++ + F S D+ + Sbjct: 834 GIKVLPPDVNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSDYLDK 893 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +++ N+RV ESL+ AGA D G+ R L ++ +K ++FA Sbjct: 894 IETLPCNKRVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLFAGLG 953 Query: 932 GTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 G S + + E+ +LG Y SGHPLD Y+ L Sbjct: 954 GGDSAGGVEPSVFDVQVPDEEWDRKHKLALEREMLGLYVSGHPLDGYEAALAAQTDTELT 1013 Query: 985 ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G +++ ++ S ++ +++ GS VT + E F Sbjct: 1014 TILGGELKHGREVKIGGIISSVDRRVSKRDGSPWAIVTIEDHNGASVELLVF 1065 >gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399] gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013] gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196] Length = 1144 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 392/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMEAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDLPRWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC 13129] gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae] Length = 1186 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 319/1070 (29%), Positives = 522/1070 (48%), Gaps = 49/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F + A Sbjct: 1 MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + L + +L EG L Sbjct: 61 AGVKPIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E G+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDAELIAE-HATGIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G + ++ L H + S+++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290 V +S DR + Y +E + D +P+A +NT+ IA R ++ P Sbjct: 240 CVQTGKTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWEP 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + LR++ GL +R GA+ Q+Y +R +FE++VI Sbjct: 300 HPHDRMPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAV-----PQNYLERAEFEIDVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K AL+D R Sbjct: 415 ERPSAPDIDIDFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQEG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + R DP V ++ + ++ LE Sbjct: 475 YKMADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRHLIETDPDVRKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ PL + +PM++ +T + E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ L+ + R ++DL + DD Y LL++ TLG+FQL+S GM++ L+ MQP Sbjct: 595 TVIGDCLENIKINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELLKRMQPT 654 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ L+ET G+I+YQ Sbjct: 655 GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETYGLIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M+I++ L+ Y+ EAD R+AMGKK E + K+ ++F G NG SK ++ Sbjct: 715 EQIMEISRKLANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAVDALWGT 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + + R Sbjct: 775 IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 +I ++ P VN ++F I + L A++ VG I++A + F D+ + Sbjct: 835 DISVLSPDVNESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDFSDYLDK 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D N+RV ESL+ AGA D + R LL ++ +K ++FA Sbjct: 895 IDITACNKRVTESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFDLFAGLG 954 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 + + + + + + E+ +LG Y SGHPLD Y+ L Sbjct: 955 ADAEEVNNVFAVQIPD-AQWDKKHQLALEREMLGLYVSGHPLDGYEEALEAQTDTPLTTI 1013 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G + + ++ ++ ++K GS VT + + + F Sbjct: 1014 LSGELRNGAEVTIGGIISGVDRRYSKKDGSPWAIVTVEDHHGAQVDLLVF 1063 >gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149] gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 1144 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 392/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|254458525|ref|ZP_05071950.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1] gi|207084833|gb|EDZ62120.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1] Length = 1167 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 365/1049 (34%), Positives = 573/1049 (54%), Gaps = 66/1049 (6%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 ++A+TD N+F A++F + AA I+PIIG + I + L I Sbjct: 1 MTSVAMTDHGNMFGAIDFYHQMKAADIKPIIGMEGYIHNGETL-----DDKSTKQRFHIC 55 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 L +GY+ L+ L S+ ++ + RI L +EGLI + G ++ Sbjct: 56 LFAKNKKGYENLMYLSSKAFI-EGMYYFPRINKKELAA-HSEGLICTSACLQGEVNWHLN 113 Query: 161 FNS----------SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHEL 209 + + A+ L +K++FGD Y+ L RH D+ ++++++++ + Sbjct: 114 LANERNVRNGALGYEGAKAVALEYKEIFGDDFYLELMRHGIGDQLFIDNEILKISKETGI 173 Query: 210 PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLP 268 +VATN++ + D + H+ M + + + +R R + + YLK+ +M +F+D+P Sbjct: 174 KIVATNDTHYTYPGDAQYHEAFMCIGMNKLYDDPNRMRHSVHEFYLKSPEQMARLFADIP 233 Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECD---------------DIQKEEENELRN 313 EAL +T EI + +P + + + + E + Sbjct: 234 EALAHTQEIVDKIEDFSITVKEPIPPNFKFTPEYAANDGLAINHEDDAPLSADASAEDKK 293 Query: 314 KAVAGLEVRLAQGA-------------IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 K +G++ A+ I +YR+RL+FE+N+I MKF GY LIV Sbjct: 294 KWFSGIDKNDAEYFTFCCKRGLDNRLKIVPQEKHDEYRERLEFEINIINSMKFPGYMLIV 353 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF++ AK I VGPGRGS AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+ Sbjct: 354 WDFVKVAKDRGIAVGPGRGSAAGSLVAYSLDITDIDPMKYDLLFERFLNPERVSMPDIDM 413 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF Q RR EVI YV KYG +VAQIITFGSL AK +RDV R L MP SQ D++ KLIP Sbjct: 414 DFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLDMPLSQADKMAKLIP 473 Query: 481 NDPAHPVSLQA---------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 ++ ++ + + + RE +D + R+ E ++KLEGL R++ HAAG Sbjct: 474 DELGITLNGKTKNGEFIDGAFQKEPKLRELIDSDANSKRVWEFAKKLEGLKRNSGIHAAG 533 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI + L P+Y+ VTQ+++ ++E LIKFDFLGLKTL ++ ++ + + Sbjct: 534 VVISNEELWYKTPIYKPSGETTFVTQYSLNYLEDVDLIKFDFLGLKTLDVIDNAIKLVKR 593 Query: 592 RGVKVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R K + +D + Y ++ T T+G+FQ+ESSGM+ + ++PD ED+IA+++LY Sbjct: 594 RFDKDVIWNQIDENDPKVYEVIRTGETVGMFQIESSGMQDLNKRLKPDSFEDLIAVLALY 653 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+++ ++ + RK+G+E I ++ +L +T GVI+YQEQVMQI Q + G+SL Sbjct: 654 RPGPMESGMLDSFIERKHGRETIEYTFDTMETILGKTYGVIVYQEQVMQIVQTIGGFSLG 713 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +D++RRAMGK K++M F GA K G A +F+L+ KFA YGFNKSH+AA Sbjct: 714 YSDIIRRAMGK--KKDMSVFNHEFSDGAQKQGYDYDKASKLFDLIEKFAGYGFNKSHSAA 771 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++++QTAW+KT+YP EF+AA +T + DN EK+ ++ + R+ I++ PP VN ++F Sbjct: 772 YAMVTFQTAWLKTYYPNEFMAALLTSDKDNTEKVVRYIDEVRRMGIELAPPDVNDSYLEF 831 Query: 829 KV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLE 883 + I + L AIKGVG I++ D F S+E+F +R+D K+N+R +E Sbjct: 832 SAITKDEKDIILFGLGAIKGVGGAAVESIIQTREEDGEFTSIENFVNRIDPSKVNKRFVE 891 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 S + +G D FGYSR LL ++ I A+ R N ++F ++ + K++L+ Sbjct: 892 SSIKSGGFDRFGYSRKALLDQIELIVDTAKDASTARKNAVGSLFGDDEEITTVKLSLKNS 951 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 E E+ LGFY SGHPLD Y+ L ++ E G V Sbjct: 952 DEYELKEILEFEKDTLGFYVSGHPLDEYRDKLDELNYSLSSELEGIKDGTFAIFIGKVEE 1011 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 Q+K ++KG++ G V+ + E F Sbjct: 1012 IQKKVSKKGNQFGIVSLMDFHGNIEIMLF 1040 >gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2] Length = 1169 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 410/1047 (39%), Positives = 581/1047 (55%), Gaps = 43/1047 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ H+ YS+++G L +++ AD QPA+AITD +NLF A++F + AG++PI Sbjct: 3 FVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + LLV GY L EL++R + + + Sbjct: 63 VGVDVWMDP--------LPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQRNQAW 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + WL E+ + GLI L+G G + +A Q A +F R Y+ LQR Sbjct: 115 VKWEWLHEL-SGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLELQRAG 173 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 V LA LP+VAT+ FL +D+EAH+ + +A ++ R R Sbjct: 174 LPTHEAHVRAAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETLANPKRIKRF 233 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + + K ++M S+F+D+P A+ NTVEIARRCS L + P LP F + I + Sbjct: 234 TREQHFKTAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPI----D 289 Query: 309 NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 R + GLE RL + +Y +RL+FEL+ I +M F GYFLIV+DFI Sbjct: 290 VYFRKASHEGLEKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIV 349 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 350 WAKANGCPVGPGRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQG 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VIRYV+ KYG + V QI TFG++ AKAALRDVGR L M Y VD + KLIP P Sbjct: 410 NRDRVIRYVKEKYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGK 469 Query: 486 PVS------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 V+ + A ++ A+ V LL ++ ++EG+ R+ HA G++ Sbjct: 470 TVTLAKVPEKPDPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVL 529 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590 I ++ P+Y+ SD V+Q++ +E GL+KFDFLGL TLT+L ++ + Sbjct: 530 IAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQFIVARR 589 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +P DD Y L + T +FQ ES GM+ L +P +ED+IAL +LY Sbjct: 590 PNMKDFSYETLPLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALY 649 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I + RK+GKE + HPL++ +L ET GV++YQEQVMQ AQ+L GYSL A Sbjct: 650 RPGPMDLIPTFVARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGA 709 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKK EEM + + F GA+K I + A +F+L+ KFA YGFNKSHAAAY+ Sbjct: 710 DLLRRAMGKKKPEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYS 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK- 829 +++Y TAW+K H EF AA+MT+E DN +K+K DA+ F I+ PP VNT + F+ Sbjct: 770 LLAYHTAWIKVHCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFEP 829 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASAD------KPFDSLEDFCSRVDSKKLNRRVLE 883 + D RI Y L A+KG G I+ A PF SL DFC+RVD +++N+RV+E Sbjct: 830 IEDKRIRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDRQRVNKRVVE 889 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L+ AGA D R L S+ ++A N+ F G+ + + L Sbjct: 890 ALIKAGAFDSLHADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAV 949 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + R E+ +GFY SGH D + +RK + E V + ++ A +V Sbjct: 950 EPWSVRERLMQEKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSV--AGIVSE 1007 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 + ++G R+ + ++ EA Sbjct: 1008 LRVINGQRG-RVAIFKLDDGSEAIEAV 1033 >gi|296436078|gb|ADH18252.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9768] gi|296437006|gb|ADH19176.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11222] gi|296437939|gb|ADH20100.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11074] gi|297140439|gb|ADH97197.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9301] Length = 1237 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 373/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K Q PA+A+TD NLF A+EF + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + ++GLI L+ SG + +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + +P VATN+ +L+ +D+ AH+ Sbjct: 179 SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238 Query: 230 VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ A ++ + + K + + + Y K+ E+ +F+ PE + NT +A Sbjct: 239 ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC L P ++ + E E L GL + G I Sbjct: 299 RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 AK + +D ++RL E ++I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P ++V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + IP DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM+ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S A+ NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LE+LV AG D F ++ L L+++ +K Sbjct: 897 KSLQDFVQRADFKKVTKKQLENLVDAGTFDRFEPNKDLALAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ + ++ E + + E+ +LG Y + HP+D + +L + Sbjct: 957 VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032 + + G IR ++ K + + + + S+ YE + Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070 >gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685] gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685] Length = 1144 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M FSDLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1] Length = 1144 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 478/1040 (45%), Positives = 663/1040 (63%), Gaps = 28/1040 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL+VHS+YSL +GA+ + ++ + PA+AITDT N+F ALEFSQ Sbjct: 1 MSHA-DFVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIGCQL + ++ P +VLL AEG L L S +L Sbjct: 60 KGVQPIIGCQL--------GLPSRSDKPGMPAEHVVLLARNAEGLANLQFLSSAGFLQT- 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L L E GL +LTGGS GP+ + A + + +G + V Sbjct: 111 VTDEPTVTLDLLCER-AGGLFLLTGGSRGPLFHMLAEGQEREATRFMERLHAAYGRYMAV 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH +R E ++ +A LPLVATN F + YEAHD L+ +A ++++ Sbjct: 170 ELHRHGQAAERAVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAER 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR RVTP+H+ K M +F+DLPEA +NT+EIAR C+ ++ P+LP + + Sbjct: 230 DRWRVTPEHWFKPAEAMRELFADLPEACDNTLEIARLCAIKVETCKPLLPMCPKVQP--- 286 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 K E+ LRN A GL RL++ + + Y +RL FEL++IA M F GYF+IVADF Sbjct: 287 GKTEDETLRNMARTGLARRLSRMDVD-EETRRKYEERLAFELDIIANMGFPGYFMIVADF 345 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK+++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC Sbjct: 346 IQWAKEHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 QDRRDEVIRYV+N+YG +RVAQIITFG LQA+AA+RDVGR L +P+ V+R+ +LIPN+P Sbjct: 406 QDRRDEVIRYVRNEYGADRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNP 465 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A PV+ QAI + R +E R D ++ RLLEI Q+LEGL+RHASTHAAG+VIGDR L +L Sbjct: 466 AQPVTLKQAIEGEPRLQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVEL 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ+++ FL GV VDLS +P Sbjct: 526 VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGVAVDLSALP 585 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD TY +L T G+FQ E +GMR L+ M+P +ED+IA V+LYRPGP+ NI Y Sbjct: 586 LDDPLTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E H I +L+ET G+++YQEQVMQIAQ ++GYSL AD+LRRAMGKKI+ Sbjct: 646 RRKHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EEMD+Q+E F GA K GI + A +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK + Sbjct: 705 EEMDRQREIFTEGAMKRGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836 +PV F+AA M+L + +K+ Q+A + I ++PP +N DF V I Sbjct: 765 HPVAFIAACMSLAREKTDKLAGLRQEADRLGIPLLPPDINASGADFTVEKLPDGGGYAIR 824 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 Y+LAA+K VG + ++ D+PF LED +R+D +++N+ LE+L AGA D Sbjct: 825 YALAAVKKVGLGAMQSLVAVRGDRPFVDLEDLAARLDPRQVNKMQLENLARAGAFDTILP 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--EKFSVENSSVRFEN 954 +R + + + + + AQ + + +F + + L + + R Sbjct: 885 NRARACGAAETVMRRAQANAQQAASGQIGLFGGGGDGPAAREPLRMPRVADWPEFERLNM 944 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKG 1012 E +GF+ +GHPLD Y P++R++G A + +++A VV ++++ TR G Sbjct: 945 EADAIGFHLTGHPLDSYGPLMRRLGAVRATGLEAAAQAGIVRVKIAGCVVDRKERPTRTG 1004 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 +++ WV S+ + E FF Sbjct: 1005 NKMAWVRLSDASGGCEITFF 1024 >gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114] gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114] Length = 1144 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 582/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAVDVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F + Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244] gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244] Length = 1187 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 376/1035 (36%), Positives = 576/1035 (55%), Gaps = 39/1035 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E +E LI+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLE-QSEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ RP+ Sbjct: 166 RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K +M +FSD+P A+ENT +A+RC+ LQ+ LP F + I E Sbjct: 226 SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285 Query: 309 NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R L + + Y +R+ +E+++I +M F GYFLIV DFIQW Sbjct: 286 HLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC Sbjct: 346 AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K++P P Sbjct: 406 RDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465 Query: 487 VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 AI + + ++ + D + E++ KLEG+ R+ HA G+VI ++ Sbjct: 466 DLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---L 598 + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R + Sbjct: 526 YSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP+D I Sbjct: 586 ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LRRAMG Sbjct: 646 PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA+++Y TAW Sbjct: 705 KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837 +K HYP EF+AA ++ EM N + I D R ++++PPSVN F D R I Y Sbjct: 765 LKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDERTIVY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AGALDC G Sbjct: 825 GLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ L + A+ NR ++F + + + + VR + E+ Sbjct: 885 ERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y +GHP+DVY+ L+ E T RG A +VV R Sbjct: 943 DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNR-----I 997 Query: 1017 WVTFSEPAKEYEANF 1031 +T + E + Sbjct: 998 MITLDDGTARVEISC 1012 >gi|229496705|ref|ZP_04390419.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis ATCC 35406] gi|229316602|gb|EEN82521.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis ATCC 35406] Length = 1251 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 338/1123 (30%), Positives = 560/1123 (49%), Gaps = 112/1123 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL VHS +S+L+G S++ ++ K D P IA+TD +F F + Sbjct: 4 FVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKHR 63 Query: 67 -----------------------------------------IQPIIGCQLDIDMQDNLKM 85 +PI GC+ + Sbjct: 64 SRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARRTRFDK 123 Query: 86 T-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138 N ++ + ++LL +GY L ++VS + + RI L++ Sbjct: 124 DKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFT-EGEYYRPRIDKDLLEQ 182 Query: 139 IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR---- 194 EG+I+++ G + + + AE+ + FK +FG+ Y+ +Q H+ D Sbjct: 183 YH-EGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNANR 241 Query: 195 -------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + +A + +VATN+ F+++ED AHD+L+ + + R R Sbjct: 242 ETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRMR 301 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +LK + EM ++F+D PE L NT+EI + F + ++P F E D + Sbjct: 302 YSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFD---DA 358 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L++ G ++R ++ ++R+DFELN I M F GYFLIV D IQ A Sbjct: 359 DKYLQHLTYEGAKMRYGDP------IPEEVKERIDFELNTIKSMGFPGYFLIVQDLIQAA 412 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + + VGPGRGS AGS AY L IT++DPL++ LLFERFLNPDR+S+PD DIDF R Sbjct: 413 RDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSGR 472 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +++++ KYGH+ VAQIITFG ++AK+++ DV R +P + R+ KLIP+ + Sbjct: 473 AKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDSD 532 Query: 488 SLQAIAD------------------DSRFREA-RLADPSVDRLLEISQKLEGLYRHASTH 528 ++ ++ + + +QKLEG R+ H Sbjct: 533 MELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIGVH 592 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 A G++IG +S ++P+ + + +TQ+ K IE GLIK DFLGLKTL+++++ Sbjct: 593 ACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIREG 652 Query: 586 LDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 L+ + R +D+ IP DD +T+ L +GIFQ ES+GM++ L +QPD E +I Sbjct: 653 LENVKHRFHKDIDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRFELLI 712 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A+ +LYRPGP+ I Y R++G+E+I+ P +L+ET GV +YQEQVM +++ L+ Sbjct: 713 AMNALYRPGPMKYIPQYIARRHGREEIIYDVPETKEILEETFGVTVYQEQVMLLSRSLAN 772 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 ++ ++D LR+AMGKK EEM+K K F+ G +NG SK + I+ FA Y FNKS Sbjct: 773 FTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYAFNKS 832 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAA Y+ ++YQTA++K HYP EF+A +++ + N +I K ++ + I+++ P VN Sbjct: 833 HAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPDVNES 892 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882 F V + I + L+ IKGV TT ++E + PF S+ DF +R+ + +NR+ + Sbjct: 893 MQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFINRKTM 952 Query: 883 ESLVFAGALDCFGYSRMQLLQ---------SLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 E+ +GA D FG R + + Y + V++ +++ +F + Sbjct: 953 EAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMGLFGESEEL 1012 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----GYEESVAT 989 + + + N+ + E ++G Y S +PL+ Y+ IL K+ ++ + Sbjct: 1013 SIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCTVKLDDLDKKDLEE 1072 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + A +V + + T+ G T + + +E F Sbjct: 1073 FKDTRMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALF 1115 >gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606] gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978] gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606] Length = 1187 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 376/1039 (36%), Positives = 581/1039 (55%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + + I + Sbjct: 226 SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256] gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256] Length = 1144 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 390/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ + Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKE 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|312109934|ref|YP_003988250.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|311215035|gb|ADP73639.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1104 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 395/1026 (38%), Positives = 593/1026 (57%), Gaps = 41/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +N+++ K Q PA+A+TD N L+ A+ F + GIQP Sbjct: 2 SFVHLHVRSCYSLLTSPAKINDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ +VLL GYQ L+++ S + + Sbjct: 62 IIGMITDIVLEG------------EEAYPLVLLAKNETGYQHLMKISSTIQTKTREG--- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + GLI LT G SG I+ A++ L +K++FG+ Y+++QR Sbjct: 107 -IPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 E Q++ L PLVATN+ ++ +ED H L+AV T + Sbjct: 165 ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGT--VIETETAA 222 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL EM FSDLP A+EN+ +IA +C ++ + LP++ ++ + Sbjct: 223 AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + GL R+ + YR+RL++EL+VI +M FS YFLIV DF+ +A+ Sbjct: 279 DYLRRLCMEGLHERVP-------SPSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 K I GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF DRR+ Sbjct: 332 KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ ++ + K +PN + Sbjct: 392 EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITI- 450 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A + FR+A + + R + + K+EGL RH STHAAG++I PLSQ+VP+ + Sbjct: 451 QEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ + Q+ +D+ IP D + Sbjct: 511 -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGETIDVREIPLHDRK 569 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L++ T GIFQLES GM++ L+ ++P EDI+A+ +LYRPGPID I Y RK+G Sbjct: 570 TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +EK +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK KE +D+ Sbjct: 630 EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ FI G + G ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F Sbjct: 690 QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA +T + + EK+ + +ARQ I+++PPSVN F V +I YSLAA+K VG Sbjct: 750 YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I++ PF DFC R+ K +NR+ +ESLV +G D FG R LL S+D Sbjct: 810 AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++AQ V + S K + + + +E+ +LG Y S HP Sbjct: 870 ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ + R G + + ++ + +++ +T+KG + ++T S+ + E Sbjct: 923 TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982 Query: 1028 EANFFP 1033 +A FP Sbjct: 983 DAVAFP 988 >gi|218767589|ref|YP_002342101.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis Z2491] gi|14194676|sp|Q9JVX8|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis Z2491] Length = 1144 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 396/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M FSDLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|295399508|ref|ZP_06809490.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294978974|gb|EFG54570.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 1104 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 394/1026 (38%), Positives = 593/1026 (57%), Gaps = 41/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL V S YSLL +++++ K Q PA+A+TD N L+ A+ F + GIQP Sbjct: 2 SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI ++ +VLL GYQ L+++ S + + Sbjct: 62 IIGMITDIVLEG------------EEAYPLVLLAKNETGYQHLMKISSTIQTKTREG--- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I WL + GLI LT G SG I+ A++ L +K++FG+ Y+++QR Sbjct: 107 -IPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 E Q++ L PLVATN+ ++ +ED H L+AV T + Sbjct: 165 ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGT--VIETETAA 222 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YL EM FSDLP A+EN+ +IA +C ++ + LP++ ++ + Sbjct: 223 AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + GL R+ + YR+RL++EL+VI +M FS YFLIV DF+ +A+ Sbjct: 279 DYLRRLCMEGLHERVP-------SPSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 K I GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF DRR+ Sbjct: 332 KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+YV NKYG + VAQIITFG+ AKAALRD+G+ LQ+ ++ + K +PN + Sbjct: 392 EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITI- 450 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A + FR+A + + R + + K+EGL RH STHAAG++I PLSQ+VP+ + Sbjct: 451 QEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 +L +TQ+ M +E+ GL+K DFLGL+TLTLL+ + Q+ +D+ IP D + Sbjct: 511 -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGEMIDVREIPLHDRK 569 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L++ T GIFQLES GM++ L+ ++P EDI+A+ +LYRPGPID I Y RK+G Sbjct: 570 TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +EK +HP + P+L T GV+IYQEQ+MQIA ++G+SL +AD+LRRA+ KK KE +D+ Sbjct: 630 EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ FI G + G ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F Sbjct: 690 QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA +T + + EK+ + +ARQ I+++PPSVN F V +I YSLAA+K VG Sbjct: 750 YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I++ PF DFC R+ K +NR+ +ESLV +G D FG R LL S+D Sbjct: 810 AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++AQ V + S K + + + +E+ +LG Y S HP Sbjct: 870 ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ + R G + + ++ + +++ +T+KG + ++T S+ + E Sbjct: 923 TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982 Query: 1028 EANFFP 1033 +A FP Sbjct: 983 DAVAFP 988 >gi|169633232|ref|YP_001706968.1| DNA polymerase III, alpha chain [Acinetobacter baumannii SDF] gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii] Length = 1187 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 375/1039 (36%), Positives = 582/1039 (56%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + + I + Sbjct: 226 SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GL+ + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLKERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNSDSND 581 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900] Length = 1187 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 376/1039 (36%), Positives = 580/1039 (55%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + + I + Sbjct: 226 SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R + ++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLDVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|169796248|ref|YP_001714041.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE] gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU] gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057] gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294] gi|294838019|ref|ZP_06782702.1| DNA polymerase III DnaE [Acinetobacter sp. 6013113] gi|294843569|ref|ZP_06788252.1| DNA polymerase III DnaE [Acinetobacter sp. 6014059] gi|294859019|ref|ZP_06796788.1| DNA polymerase III DnaE [Acinetobacter sp. 6013150] gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056] gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058] gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059] gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE] gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU] gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057] gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294] gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2] gi|323517712|gb|ADX92093.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii TCDC-AB0715] Length = 1187 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 376/1039 (36%), Positives = 581/1039 (55%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K EM+ +FSD+P A+ENT +IA+RC+ L++ LP + + I + Sbjct: 226 SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56'] gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56'] Length = 1212 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 405/1076 (37%), Positives = 595/1076 (55%), Gaps = 61/1076 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL VHS YSLL+G+L + ++ + + A+A+TD N+F A++ + GI I Sbjct: 5 FIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGIGAI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IGC++++ ++ P +VLL ++ EGY+ L+ +VS+ ++ + Sbjct: 65 IGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPASGLA 124 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187 + L + + GLI LTG G + + + L + F LYV LQ Sbjct: 125 PSVRLDTVAQ-HNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYVELQ 183 Query: 188 RHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245 H ++ + ++ A LPLVATN++ F + ED E L +A + ++ Sbjct: 184 DHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEASAA 243 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQ 304 + + +LK EM+ +F D P+A+ +T+EIA RCS L++ P+LP F Sbjct: 244 HHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSGF--- 300 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADF 363 + + R+ A GL RLAQ A + YR RLD ELNVI +M F GYFLIV DF Sbjct: 301 ADSASYFRHVAHDGLTKRLAQIAQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIVWDF 360 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I++AK + IPVGPGRGSGAGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMPDFD+DFC Sbjct: 361 IKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDVDFC 420 Query: 424 QDRRDEVIRYVQNKYGHE----RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 DRRDEVI YV KY E V QI TF L+A++ ++DV RA+ P ++ ++ LI Sbjct: 421 MDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIASLI 480 Query: 480 PNDPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 P +A+ + + + + +DP+V LL+ +QKLEGL RHA HAAG+VI + Sbjct: 481 PQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVISEG 540 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594 PL VP +++ + VTQ+ E AGL+KFDFLGLKTLT++ ++ + R Sbjct: 541 PLWDHVPCFKN--GEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPDLAA 598 Query: 595 ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + D++ +P DD TY LL + T G+FQLESSGM+Q + ++PD EDI+A V+LY Sbjct: 599 KEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAVALY 658 Query: 651 RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ + + + K+G++ I +HPL+D +L+ T GVI+YQEQVMQIAQ L+GY+L Sbjct: 659 RPGPLGTGMVKDFVDCKHGRKPIEKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAGYTLG 718 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQK F+ G+ KNG+ A IF LL FA YGFNKSH+AA Sbjct: 719 GADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKSHSAA 778 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++YQTA++K HYPVEFL A MT + D +EK+ + + R + ++I+PP +N DF Sbjct: 779 YALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINESKTDF 838 Query: 829 KVG--------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861 V D +I + + AI+GVG + I+EA A Sbjct: 839 TVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARDAGGV 898 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF---GYSRMQLLQSLDNIQKYAQWVEK 917 F L DF RVD +++N+ V E+LV GA D G SR + +D + ++ K Sbjct: 899 FADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSRSASK 958 Query: 918 NRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 R + +FA ++ + E++ LGFY SGHPLD Y L Sbjct: 959 ERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPLDRYGVDLN 1018 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANF 1031 + + +R+ MV +++ + G +I + + E Sbjct: 1019 RFDVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGGGKIAFFVLEDTTGRVEVKV 1074 >gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii 23-P] Length = 1445 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 346/1071 (32%), Positives = 550/1071 (51%), Gaps = 64/1071 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 F HL H+ YS+L+ + + I+ A D PA+A+TDT N+ +A F Sbjct: 260 FSHLHNHTQYSVLQSTMEIGQIVKAAADDNMPAVAMTDTANMMAAFHFVSAILNHNKTAK 319 Query: 67 --IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++PI+GC+ ++ ++ K+ +VLL GY L ++ S + +D Sbjct: 320 TPMKPIVGCEFNVCGD------HKNKSQKDNGFQVVLLAKNKRGYHNLAKMSSIAF-VDG 372 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI +++ E +I+LTG G + + AE+ L+ +K+ F D LY+ Sbjct: 373 FYYVPRIDREIIKKY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEALIWWKEEFKDDLYI 431 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH D ++ + H + ++ATNN+ +L ++D AHD+L+ V + Sbjct: 432 ELMRHDQQDEKIVNETLLTFSKKHNIKVIATNNTFYLEKKDANAHDILLCVKEGEKQATP 491 Query: 244 -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVH 288 ++Y K+ EM ++F+DLPEA+ N EI + Sbjct: 492 IGKGRGYRYGLPNQEYYFKSSEEMKTLFADLPEAISNIQEIVDKIEIYTLARDVLLPAFD 551 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 P + I E D ++ E N L++ G E G ++RLDFEL+VI Sbjct: 552 IPDEFKDIADESDKGKRGENNFLKHLTFVGAEK-------RYGDITASIKERLDFELSVI 604 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + + GYFLIV DFI+ A+ ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL Sbjct: 605 EKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + R V+ YV NKYG +VAQIIT+G++ AK+++RD R L +P Sbjct: 665 NPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724 Query: 469 YSQVDRLCKLIP---------NDPAHPVSLQAIADDS-----RFREARLADPSVDRLLEI 514 + DR+ KLIP +DP + + + R + V + Sbjct: 725 LFEADRIAKLIPLIKLKNIFGDDPKSKGKVAGLRSEEKQLVEELRSMSFGNDLVSETINK 784 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEG R+ HA G++I ++ VP+ SD+ VTQF+ +E AGL+K DFL Sbjct: 785 ATMLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844 Query: 575 GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLTL++ ++ + R D P DD +TY L T+GIFQ ES GM++ + Sbjct: 845 GLKTLTLIKDTVKIVKARHNVDLDPDSFPLDDVKTYELFQRGETVGIFQYESPGMQKHMR 904 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 ++P D+IA+ +LYRPGP++ I + NRK+G E I P ++ L ET G+ +YQE Sbjct: 905 SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIAYDLPAMEEYLAETYGITVYQE 964 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM ++Q L+ ++ EADVLR+AMGKK ++K K +F+ AS+ G I++ Sbjct: 965 QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLNKMKPKFLEQASEKGHDAEKLEKIWKDW 1024 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH+ YA I+YQTA++K HYP E++A+ ++ M++++ + F ++ ++ Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEECKRME 1084 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 + + P +N + F V D + + +AA+KGVG R I++ + + S+ D R Sbjct: 1085 LPVFGPDLNESFLKFSVNDEGAVRFGMAAVKGVGAGAVRAIIKEREEHGNYTSIFDLAKR 1144 Query: 872 VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923 VD + N++ +SLV AGA D F R Q + L+ KY ++N + Sbjct: 1145 VDLRAANKKSFDSLVKAGAFDSFEDTHRAQYFHTDEKGLTFLERAMKYGSKYQENENSAQ 1204 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--KMGIK 981 ++F + + + + E+ V+G Y S HPLD +K L+ +K Sbjct: 1205 VSMFGEASSVQFPEPDIPECDTWGTMELLSQEKEVIGIYISAHPLDDFKNELKFCNASLK 1264 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++ N+ A ++ Q + ++ G T + E F Sbjct: 1265 YFKADLSKFINLNMAFAGIITDVQHRVSKAGKGWAMFTAEDYGDSNEFRIF 1315 >gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23] gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23] Length = 1243 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 363/1119 (32%), Positives = 543/1119 (48%), Gaps = 109/1119 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 FVHL VH+ YS+L+G S+ ++DK D +AITD ++F EF Sbjct: 3 DFVHLHVHTYYSILDGQSSIKKLVDKAIGDGMKGMAITDHGDMFGIKEFHDICNGVNKQR 62 Query: 63 CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 G+ +PI GC++ + + ++ + +++L GY+ LI+LVS Sbjct: 63 KKDGLEPFKPIFGCEMYVARRGDMMLKE--GKEDLGGYHLIVLAKNEHGYKNLIKLVSNS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G + + A K + K L+G Sbjct: 121 W-VDGFYNRPRTDHKQLEKYH-EDLIVCSACIAGEVPAKILKGDIEGARKAIEWHKNLWG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + +++LA + + LV TN+S F+ +E+ E Sbjct: 179 DDYYLELQRHEVTDPNIRANRETFPLQQQANKVLIELAKEYGVKLVCTNDSHFVDKENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ +A + R + + K + EM IFSD+PEAL NTVEI + Sbjct: 239 AHDHLLCLATGKDLDDPTRMLYSKQEWFKTQQEMNDIFSDVPEALANTVEILNKVETYSL 298 Query: 287 VHAPILPRFIEKECDDIQKE---------------------------------------- 306 PI+P F E ++E Sbjct: 299 DADPIMPFFPIPESFGTEEEWRQKFTEQQLFEEFTTDENGENPLDPEAAEKKIKKLGGYD 358 Query: 307 -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E + L A G E R +D +R+ FEL+++ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYEGAERRYGNP------IPKDVEERVKFELHIMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD Sbjct: 413 VQDFINSARDELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE A IIT+ S+ K +++DV R +P + + LCK Sbjct: 473 DTDFDDDGRGKVLKWVMDKYGHENCAHIITYASMATKNSIKDVARVENVPLAISNALCKA 532 Query: 479 IPND----PAHPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAA 530 IP+ + AI +EA DP + ++ ++ LEG R HA Sbjct: 533 IPDRLPEVDGKTPKMNLTNAIKAVPELQEAEASTDPHIANTMKYAKMLEGTVRGTGIHAC 592 Query: 531 GIVIGDRPLSQLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 G +I P+S VP+ D TQ++ IE GLIK DFLGLKTL+ L+++ Sbjct: 593 GFIICRDPISDHVPVSTADDPDFKGTKTNCTQYDGHVIESTGLIKMDFLGLKTLSELKEA 652 Query: 586 LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644 + + RG+ VDL IP DD +TY L T+G FQ ES GM++ L + P ED+I Sbjct: 653 CANIKRTRGIDVDLDTIPIDDPKTYELYQQGRTVGTFQFESQGMQKYLRELHPTVFEDLI 712 Query: 645 ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 A+ +LYRPGP+D I + RKNG+E I ++ LK+T G+ +YQEQVM +++ L+ Sbjct: 713 AMNALYRPGPMDYIPSFIARKNGREPITYDIDCMEKYLKDTYGITVYQEQVMLLSRQLAD 772 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 ++ E+D LR+AMGKK K+ +D K +FI G KNG + I+ KFA Y FNKS Sbjct: 773 FTRGESDALRKAMGKKKKDIVDAMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYAFNKS 832 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 HAA Y+ ++YQTA++K +YP E++AA M+ D + +I K + +Q I + P VN Sbjct: 833 HAACYSWVAYQTAYLKANYPAEYMAAIMSRRRDQITEITKLMDECKQMGIATLGPDVNES 892 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882 F V I + L AIKG+G + A I++ + P+ + DF RV+ +NR+ Sbjct: 893 YEKFGVNHHGEIRFGLGAIKGMGDSAALSIIDEREKNGPYKDIYDFAQRVNFSAVNRKAF 952 Query: 883 ESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 ESL +G D FG R ++ + +Y Q ++ + ++F Sbjct: 953 ESLALSGGFDSFGIRREDYFAKNPKGETFIEMLCRYGQLYQQEQAEMKNSLFGMFGEGVE 1012 Query: 936 DKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TI 990 + + R E+ ++G Y S HPLD YK IL + E Sbjct: 1013 IAQPQPPKNDIRWSDIERLNKERELVGIYLSAHPLDEYKIILDNLCNTKCTELADIAKLA 1072 Query: 991 RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 ++ L +V +++ T+ G G VT + E Sbjct: 1073 DREDVILGGIVTAQKTGFTKTGKPYGVVTIEDFDGSGEI 1111 >gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478] Length = 1183 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 336/1065 (31%), Positives = 523/1065 (49%), Gaps = 44/1065 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S SFVHL H+ YS+L+GA +N +L ++ Q PAI +TD N+F A EF A A Sbjct: 4 SSSRSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNSATQA 63 Query: 66 GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 GI+PIIG + I + + + ++ A G + L +L Sbjct: 64 GIKPIIGVEAYIAPASRFDTRRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRNLFKL 123 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S Q + R+ + E EG+I+ TG SG + + A + ++ Sbjct: 124 SSLASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQEREALEAAARWR 182 Query: 176 KLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 ++ G + ++ L H +R ++ + T +P +ATN+ +++ + H+ L+ Sbjct: 183 EIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEALLC 242 Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 V +S +R + D Y + + D + Sbjct: 243 VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR 302 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 + + + LR++ AGL R G A Y R D+E++VI F Sbjct: 303 DRMPVFPVPDGHDPASWLRHEVAAGLRRRFPDGPPAS------YVTRADYEIDVICAKGF 356 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 YFLIVAD I +AK I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLNP+R Sbjct: 357 PSYFLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 416 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471 SMPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 417 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476 Query: 472 VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 DR+ K P A + + + + R DP V + + + LEGL Sbjct: 477 ADRITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTALGLEGLI 536 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 537 RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596 Query: 583 QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++D + +G+ +DL +P DD TY LL TLG+FQL+ MR L MQP E Sbjct: 597 GDAIDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 656 Query: 642 DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695 DI+A+++LYRPGP+ Y +RKNG++ I IHP + L+ ET G+I+YQEQ+ Sbjct: 657 DIVAVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLIVYQEQI 716 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M+IAQ ++GYSL+ AD+LR+AMGKK +E +DK+ E F G NG S +++ + Sbjct: 717 MRIAQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKALWDTILP 776 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FADY FNKSHAA Y ++SY TA++K +YP E++A +T D+ +K + D R+ I Sbjct: 777 FADYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874 ++PP VN ++F I Y L A++ VG +++ +D F D+ +++D Sbjct: 837 VLPPDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDYLNKIDI 896 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 N++V ESL+ AGA D G++R L + +K ++F Sbjct: 897 SACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDDGT 956 Query: 935 SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988 + + E+ +LG Y SGHPL+ +L + Sbjct: 957 GAADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAGQVDTAIPAILDGD 1016 Query: 989 TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ S ++ + G + E FFP Sbjct: 1017 VPNDTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1061 >gi|302531855|ref|ZP_07284197.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] gi|302440750|gb|EFL12566.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4] Length = 1190 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 334/1074 (31%), Positives = 539/1074 (50%), Gaps = 57/1074 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SFVHL VH+ YS+L+GA + +L + QPAIA+TD + +A EF + A + + Sbjct: 2 SDSFVHLHVHTEYSMLDGAAKVKPLLAEAERLGQPAIAMTDHGTMSAAAEFYRVAKNSPV 61 Query: 68 QPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQ 110 +PIIG + + + + + + + A+G + Sbjct: 62 KPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGSGSYTHMTMWAENADGLR 121 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L+++ S + + R+ + E G++ TG SG + + A + Sbjct: 122 NLLKMSSLASF-EGYYRKPRMDRDLIAENHR-GIMATTGCPSGEVQTRLRLGQREQAIQA 179 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 +K +FG D ++ L H +R ++++ +L VATN+S +++++ EAH Sbjct: 180 ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPVATNDSHYVTQDQAEAH 239 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 L+ V +S R + D Y +E + + D + Sbjct: 240 SALLCVQAGKTLSDPTRFKFDGDGYYLKSAEAMREYWDKEVPGAAQNTLLIAERVQSYAD 299 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 + + K E++ LR + + R G Q+Y+ R+D EL ++ Sbjct: 300 VFDFHDRMPRFPVPEGKTEDDLLREEVEKFVPTRFPDG------PTQEYKDRIDRELGIM 353 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 A+M FS YFL+V D ++WAK+ I VGPGRGS GS+ AY L ITD+DP+ SLLFERFL Sbjct: 354 AKMGFSAYFLVVGDLVRWAKEQRIRVGPGRGSATGSLVAYILHITDLDPIEHSLLFERFL 413 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466 NP+R+S PD D+DF RR EV++Y +K+G E VAQ+ITFG+++ KAA++D R Q Sbjct: 414 NPERVSPPDIDLDFDDRRRGEVLQYTIDKWGAENVAQVITFGTIKTKAAIKDAARVHFGQ 473 Query: 467 MPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQK 517 +S D++ K +P A + + S R DP V ++++ ++ Sbjct: 474 PGFSIADKITKALPPPIAAQDIPLSGIFDPKHERYGEASEVRTLTETDPEVKQIMDTARG 533 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+A HA +++ PL ++P++R +T F+ E GL+K DFLGL Sbjct: 534 LEGLIRNAGVHACAVILSSEPLLDVIPLWRRD-DGATITGFDYPSCEDMGLLKMDFLGLS 592 Query: 578 TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 TLT+++ ++ + G ++DL+ + DD +TY LL+ TLG+FQL+ + MR L M Sbjct: 593 TLTIIEDTIQAVKDNHGREIDLATLALDDKKTYELLSRGDTLGVFQLDGAAMRSLLRAMA 652 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVII 690 P DI A+++LYRPGP+ + + Y R NG++KI IHP ++P+L ET +++ Sbjct: 653 PTHFGDIAAVLALYRPGPMAANAHIDYAERSNGRQKISPIHPELKDALEPILGETYHLLV 712 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM IAQ L+GY+L AD+LRRAMGKK KE ++K+ E+F G G S ++ Sbjct: 713 YQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFREGMLGKGFSAEACQTLW 772 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 +++ FA Y FNKSH A Y ++SY TA++K +YP EF+AA +T N +K + + R Sbjct: 773 DVMLPFAGYAFNKSHTAGYGLVSYWTAYLKANYPAEFMAAQLTSNSGNKDKSAIYLAECR 832 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869 + I+++PP VN + F+ + I + L A++ VGT I++ + + DF Sbjct: 833 RMGIKVLPPCVNESNLRFRAVGSDIRFGLGAVRNVGTNVVDSIVKTRQEKGLYTGFVDFL 892 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 + + N+RV ESL+ AGA D FG +R+ ++ + + +++ ++F Sbjct: 893 DKSELPVCNKRVTESLIKAGAFDAFGLTRLSMIAVHEEAVEAVVPLKRQEAMGQFDLFGT 952 Query: 930 EKGTFSDKITLEKFS---------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 S ++ E+ +LG Y S HPLD + ILR+ Sbjct: 953 GGDESSAEVAAASSPLAHVKFGPDEYPRKQLLAYERDMLGLYVSAHPLDGAERILRQHAP 1012 Query: 981 KGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 K V + I L+ M+ S ++ +KG V + E FFP Sbjct: 1013 KPIAVLVDDAPKEGEIVLSGMISSVDRRVNKKGEPWAIVVVEDLDASMEVLFFP 1066 >gi|325929585|ref|ZP_08190699.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118] gi|325540095|gb|EGD11723.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118] Length = 1196 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 413/1082 (38%), Positives = 602/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter haemolyticus ATCC 19194] gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter haemolyticus ATCC 19194] Length = 1187 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 376/1035 (36%), Positives = 576/1035 (55%), Gaps = 39/1035 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D+ PA+A+TD +NL +A++F + GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E +E LI+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLE-QSEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ RP+ Sbjct: 166 RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K +M +FSD+P A+ENT +A+RC+ LQ+ LP F + I E Sbjct: 226 SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285 Query: 309 NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R L + + Y +R+ +E+++I +M F GYFLIV DFIQW Sbjct: 286 HLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC Sbjct: 346 AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K++P P Sbjct: 406 RDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465 Query: 487 VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 AI + + ++ + D + E++ KLEG+ R+ HA G+VI ++ Sbjct: 466 DLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---L 598 + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R + Sbjct: 526 YSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP+D I Sbjct: 586 ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LRRAMG Sbjct: 646 PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA+++Y TAW Sbjct: 705 KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837 +K HYP EF+AA ++ EM N + I D R ++++PPSVN F D R I Y Sbjct: 765 LKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDERTIVY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AGALDC G Sbjct: 825 GLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ L + A+ NR ++F + + + + VR + E+ Sbjct: 885 ERSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y +GHP+DVY+ L+ E T RG A +VV R Sbjct: 943 DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNR-----I 997 Query: 1017 WVTFSEPAKEYEANF 1031 +T + E + Sbjct: 998 MITLDDGTARVEISC 1012 >gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A] gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A] Length = 1241 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 347/1122 (30%), Positives = 540/1122 (48%), Gaps = 109/1122 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62 ++HL VH+ YS+L+G ++N++DK D +AITD +F EF+ Sbjct: 3 DYIHLHVHTHYSILDGQSKVSNLVDKAINDGMKGMAITDHGVMFGIKEFADYCATKNKER 62 Query: 63 CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 A G +PI GC++ + + + + +++L GY+ LI+LVS+ Sbjct: 63 KAKGEEPFKPIFGCEMYVARRKLTDKVKE--MHDNSGYHLIVLAKNYNGYKNLIKLVSKS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L++ E LI+ + +G I + A + L +KKLFG Sbjct: 121 W-VDGYYYRPRTDREQLEKYH-EDLIICSACLAGEIPSKIRKGDIEGAREACLWYKKLFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 D Y+ LQRH D + ++Q A + + LV TN+ F +E E Sbjct: 179 DDFYLELQRHEVTDPNLIANREAFPLQQQVNRVLMQFAKDYNIKLVCTNDCHFEDKETAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + + R R + + K R EM IFSD+PEAL NT+EI + Sbjct: 239 AHDHLLCLSTNDDLDDPKRMRYSKQEWFKTREEMNQIFSDVPEALSNTIEILNKIEIYDI 298 Query: 287 VHAPILPRFIEKECDDIQ------------------------------------------ 304 H PI+P F E + Sbjct: 299 NHGPIMPFFPIPEDFGTEAQWREKFSKEDLYHEFTSDENGENQLPEQEANKVIDRLGGYE 358 Query: 305 -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K E + L A G ++ R+ FEL+V+ M F GYFLI Sbjct: 359 KIYRIKFEADYLAKLAYDGACRLYGDPL------PEEVNSRIRFELHVMKTMGFPGYFLI 412 Query: 360 VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V DFI A+ + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD Sbjct: 413 VQDFINAAENELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D DF D R +V+++V +KYGHE+ A IIT+ ++ K +++DV R ++P + + LCK Sbjct: 473 DTDFDDDGRGKVLQWVMDKYGHEKCAHIITYSTMATKNSIKDVARVEKLPLERSNALCKA 532 Query: 479 IPNDPAHPVSLQ---AIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 IP+ + + + AI+ +EA + ++ ++ LEG R HA G +I Sbjct: 533 IPDRLPNGMKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTIRGTGIHACGFII 592 Query: 535 GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 P+ VP+ D P VTQ++ IE GLIK DFLGLKTL+ L+++ + Sbjct: 593 CRNPIDDWVPVSTATDPDFPDKKVPVTQYDGHVIETTGLIKMDFLGLKTLSELKEACKVI 652 Query: 590 AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 Q +D+ IP DD TY L T+G FQ ES+GM++ L + P ED+IA+ + Sbjct: 653 RQTTGKVIDIEKIPIDDALTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I + RKN + P ++ LK+T G+ +YQEQVM +++ L+ ++ Sbjct: 713 LYRPGPMDYIPDFIKRKNDPSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 E+D LR+AMGKK K +D K +FI +NG I I+ KFA Y FNKSHA Sbjct: 773 ESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYAFNKSHATC 832 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y+ ++YQTA++K HYP E++AA MT + +I K ++ + I+ + P VN + F Sbjct: 833 YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGF 892 Query: 829 KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 V I + L+AIKG+GT A +I++ + P+ + +F RVD +NR+V+ESL Sbjct: 893 GVNKHGEIRFGLSAIKGIGTGAAENIVKEREKNGPYKDIFNFIERVDLCSINRKVIESLA 952 Query: 887 FAGALDCFGY--SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 ++G D G R + LD + +Y Q + + ++F + Sbjct: 953 YSGGFDNLGPIKCREEYFGVNAKGEVFLDTLLRYGQLFQTAKAEAANSLFGGFDSVPVTR 1012 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIR 991 + + + E+ ++G Y S HPLD + +L + + + Sbjct: 1013 PAIPVTEKWATIEKLNKERELVGIYLSAHPLDEFAVVLNHLCNTHCSQIHRNADMAELAK 1072 Query: 992 GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032 I +V ++ + + +++ + E F Sbjct: 1073 TEEITFGGIVTKVKESFSQKTNKPYAFISIEDFEGTAEIALF 1114 >gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis ATCC 13091] gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis ATCC 13091] Length = 1144 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 MELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TPD + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|21230815|ref|NP_636732.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769186|ref|YP_243948.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|21112417|gb|AAM40656.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574518|gb|AAY49928.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris str. 8004] Length = 1196 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 412/1081 (38%), Positives = 604/1081 (55%), Gaps = 77/1081 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDVTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFAEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT+ +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 + ++PP VN F+ + I Y L AIKGVG I+E + P+ +L DFC+R Sbjct: 824 LTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKIL 1003 Query: 991 RGNN-------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECSA 1059 Query: 1032 F 1032 F Sbjct: 1060 F 1060 >gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153] Length = 1144 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355] Length = 1144 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102] gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102] Length = 1144 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + ++ A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 LSL----DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKTTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|269469110|gb|EEZ80658.1| DNA polymerase III, alpha subunit [uncultured SUP05 cluster bacterium] Length = 1150 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 394/1051 (37%), Positives = 597/1051 (56%), Gaps = 45/1051 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL HS YS+ + + ++DK AIA+TD NLF+A++F QK+ + Sbjct: 1 MPNI-DFVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSIS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI G +L + + S++LL +GY L EL+S YL Q Sbjct: 60 NGIKPIFGAELTVKDK-------------AQNFSVLLLCQDRQGYANLSELISLSYLHGQ 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + V I L +GLIM+ + + N + A +++ + +F DR Y+ Sbjct: 107 SVEGVSITTEQLVN-HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYL 165 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 ++QR D ++L +PLVATN+ FL DY+AH+ + ++ ++ Sbjct: 166 SVQRTGRANDEKYLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDA 225 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + + YLK+ EM ++FSDLP+ L N+VEIA+RC+ ++H Sbjct: 226 RREKFYSAEQYLKSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNF---PVP 282 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 ++ AGL R + + Y +RL FEL VI +M F GYFLIVAD Sbjct: 283 EGLSIAQFFEQESKAGLGKR----LEKIKANRKIYDERLTFELGVIVQMDFPGYFLIVAD 338 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI W++ N+IPVGPGRGSGAGS+ AYAL IT++DP++ LLFERFLNP+R+SMPDFDIDF Sbjct: 339 FIAWSRNNDIPVGPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDF 398 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI YV KYG E+V+QIIT+G + AK +RDVGR L PY DR+ K IPND Sbjct: 399 CTDRRDEVITYVAKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPND 458 Query: 483 PAHPVSL-------------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 +S + ++ ++ SV L+++S +LEGL R+ THA Sbjct: 459 LKINLSRALGIFDQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHA 518 Query: 530 AGIVIGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 G++I +S P+Y+ SD V+QF+MK +E GL+KFDFLGL LT++ K++ Sbjct: 519 GGVLIAPSKISDFCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKM 578 Query: 589 LAQRGVKVDLSLIP---FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + +G+ +L I DD Y LL T GIFQLES GMR L+ ++ D EDI+A Sbjct: 579 IHAKGLSDELIDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVA 638 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 +++LYRPGP+ +V + + HP+++ +LK T GV +YQEQVM+ AQ+++G Sbjct: 639 MLALYRPGPLGAGMVDDYINVKHGEDAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAG 698 Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 YSL AD+LRRAMGKKI EM+KQ++ F+ GA+K I K A IF+L+ KF+ YGFNKS Sbjct: 699 YSLGGADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKS 758 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+ AYA ISYQTAW+K HYP F+A+ ++ +MD+ +KI + + + + P+V Sbjct: 759 HSVAYAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCES 818 Query: 825 CVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882 +F + D++ I Y L AIKGVG + ++ A + L +FC+R++ K LN+R + Sbjct: 819 DYEFSIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAI 878 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E+L+++GA D FG R LL++ K A+ + ++TN +F + +++ + Sbjct: 879 EALIYSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAEYELSYDP 938 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + R + E+ V+G+YF HP D YK L+++G+ +++V +R+ A++ Sbjct: 939 CPRFSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRIGVTLPKDTV-LRNNKEVRVLALIS 997 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + TR G ++ + + + + A FP Sbjct: 998 ELRYITTRSGDQMASIIIEDGSTKLSAVIFP 1028 >gi|71898629|ref|ZP_00680799.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] gi|71731576|gb|EAO33637.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] Length = 1193 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHTGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + + F + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIP+ + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+R Sbjct: 824 LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + + Sbjct: 884 VTSAKLNRRALEAMIQAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 GT + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILGSQQRGNGEKRTWQSEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|237785363|ref|YP_002906068.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM 44385] gi|237758275|gb|ACR17525.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 1199 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 312/1080 (28%), Positives = 523/1080 (48%), Gaps = 56/1080 (5%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + S SFVHL H+ YS+L+G ++ ++D++ PA+ +TD N+F + F + Sbjct: 4 MIANMANS-SFVHLHNHTEYSMLDGMAKVDLLVDEVKRQNMPAVGMTDHGNMFGSDAFYR 62 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQ 110 A I+PIIG + + + ++ A G + Sbjct: 63 AMTANDIKPIIGVECYMAPDSRFNKKRVRWGEAHQKRDDVSASGAYLHQTMIAENATGLK 122 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L L S Q + R+ + E +EG+I T SG + A K Sbjct: 123 NLFYLSSMASYEGQLGKWPRMDAELIAE-HSEGIIATTACPSGEVQTRLRLGQFDEALKA 181 Query: 171 LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 ++ ++G D ++ L H ++ ++++++ +P + TN+ +++++ +H Sbjct: 182 AAKWQDIYGKDNYFLELMDHGIEIEQRVRNELLEIGRKLNIPPLVTNDCHYVTKDQARSH 241 Query: 229 DVLMAVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARR 280 +V++ V + +++ +R D Y + + D +NT+ IA R Sbjct: 242 EVMLCVQTGSTMNEPTLDQGGNRFAFNGDGYYLKSAREMRDTWDDMVPGGCDNTLLIAER 301 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 ++ P + K + L ++ GL+ R + Q+Y R Sbjct: 302 VGDYSEIWEPHTHDRMPKYDVPEGYTPTSWLTHEVEQGLKKRFEGQPV-----PQEYTDR 356 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +E+ VI + YFL+VAD I+ A++ I VGPGRGS AGS+ AYALTIT+IDPL+ Sbjct: 357 AKYEIGVIDFKGYPSYFLVVADLIKHARRVGIRVGPGRGSAAGSLVAYALTITNIDPLQH 416 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R S PD DIDF RR E+IRY + +G ++VAQ+ITFG+++ K AL+D Sbjct: 417 GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADNWGEDKVAQVITFGTVKTKQALKD 476 Query: 461 VGRALQMPYSQVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVD 509 RA L A + ++ + R+ DP V Sbjct: 477 SARAHFGQPGFQMAERITKALPAPIMAKDIPLSGIVDPEHPRYSEAAEVRQLIETDPDVK 536 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 ++ + ++ LEG+ R A HA +++ PL +PM++ + +T + E GL+ Sbjct: 537 KIFDTARGLEGVVRQAGVHACAVIMASVPLLDHIPMWKRAQDGAIITGWPYPACEAIGLL 596 Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628 K DFLGL+ LT++ ++ + + RG +DL + D TY LL+ TLG+FQL+S GM Sbjct: 597 KMDFLGLRNLTVIGDCIENIKENRGEDLDLEGLSVVDEPTYELLSRGDTLGVFQLDSGGM 656 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKE-- 684 R+ L+ M P DI+A ++LYRPGP+ ++ +RKNG+EKI IHP ++ L++ Sbjct: 657 RELLKRMGPTEFSDIVAALALYRPGPMGEGAHWSYADRKNGREKITPIHPELEEPLRDIL 716 Query: 685 --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 T G+I+YQEQ+M+I+Q ++ YS +AD R+AMGKK E + K++ F +G +NG S Sbjct: 717 AETYGLIVYQEQIMKISQKVANYSAGQADSFRKAMGKKKPEVLAKERVSFEAGMKENGYS 776 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +++++ FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K Sbjct: 777 DDAINTLWKVILPFAGYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSDKKDKS 836 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKP 861 + D R I ++ P VN+ F+ I + L A++ VG I+ Sbjct: 837 AIYLSDCRHLGIDVLSPDVNSSKYTFQSVGKDIRFGLGAVRNVGEDVVESIVSTRREKGA 896 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F D+ +++D+ NRRV ESL+ AGA D G+ R L ++ +K Sbjct: 897 FKDFTDYLNKIDTIACNRRVTESLIKAGAFDSMGHPRKGLYLIHEDAVDSVISTKKAADK 956 Query: 922 KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 ++FA G ++ I + + + E+ +LG Y S HPLD Y+ L Sbjct: 957 GQFDLFAGLGGEAEEEDSAFSIEVPD-QEWDRKHKLALEREMLGLYVSEHPLDGYEETLA 1015 Query: 977 KMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + +I + ++ + ++ ++K GS VT + + F Sbjct: 1016 AQTDTPLTTVLSGELKDKQDIVIGGIISAVDRRFSKKDGSPWAIVTIEDHNGASVDILVF 1075 >gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190] gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902] Length = 1144 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 392/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I D +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+L LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ + + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|319440285|ref|ZP_07989441.1| DNA polymerase III subunit alpha [Corynebacterium variabile DSM 44702] Length = 1188 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 312/1072 (29%), Positives = 508/1072 (47%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++KS SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F A Sbjct: 1 MKKS-SFVHLHNHTEYSMLDGMAKVDLLAQEVSRQGMPAVGMTDHGNMFGSDAFYHAMTA 59 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A I+PIIG + + L + ++ A G L Sbjct: 60 ADIKPIIGIETYMAPDSRLIKDRIKWGQPEQKRDDVAGGGYYLHQTMMAENATGLHNLFR 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 120 LSSLASYEGQVSKYPRMDAEIVAE-HAEGIIATTGCPSGDVQTRLRLGQFDKALEAAAMW 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ ELP + TN+ ++ ++ + H+V++ Sbjct: 179 QDIYGKDNYFLELMDHGLDIEKRVRDDLLEIGKRLELPPLVTNDCHYVLQKQAKPHEVML 238 Query: 233 AVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFI 284 V + + R + D Y +EM+ + D +NT+ IA R Sbjct: 239 CVQTGATLEEPTLDEGGKRFAFSGDGYYIKPAEMLREYWDPIVPDGCDNTLWIAERVQDY 298 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 ++ + K + L ++ GL R G Q+Y R +E Sbjct: 299 GELWEEHTHDRMPKYDVPEGHTPTSWLTSEVHDGLIERFNGG-----EVPQEYLDRAKYE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI + YFL+VAD I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ L+F Sbjct: 354 IDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRGSAAGALVAYALTITNIDPIEHGLMF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R S PD DIDF DRR E+IRY +G ++VAQ+ITFG+++ K A++D RA Sbjct: 414 ERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWGEDKVAQVITFGTVKTKQAIKDASRA 473 Query: 465 LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 K IP + + R DP V + + Sbjct: 474 HHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPEHPRYGEAAEIRTLIETDPVVKEIYD 533 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + LEG+ R A HA +++ PL +PM++ +T + E GL+K DF Sbjct: 534 DALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGAYITGWPYPACEAIGLLKMDF 593 Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ + + + RG DL + DD +Y LL TLGIFQL+S GM++ L Sbjct: 594 LGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPASYELLARGDTLGIFQLDSGGMQELL 653 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPML----KETQ 686 + M+P DI+A ++LYRPGP+ Y +RKNG++ I IHP + + +ET Sbjct: 654 KRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRKNGRKPIEPIHPELAESIKDILEETY 713 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + K+ +F +G NG S Sbjct: 714 GLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAKEFGKFSAGMKSNGYSDEAI 773 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++ + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T D +K + Sbjct: 774 KALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKEHYTAEYMAALLTSVADKKDKSAIYL 833 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 D R ++++ P VN F+ I + L A++ VG I++A + F Sbjct: 834 ADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEDVVDSIVKAREEKGKFTDF 893 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ ++D+ N+RV +SL+ AGA D G+ R L ++ +K + Sbjct: 894 SDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKGLNLIHEDAVDAVTSTKKAAAKGQFD 953 Query: 926 IFAHEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 +FA + + + E+ +LG Y SGHPLD ++ L Sbjct: 954 LFAGLSEEETGDAFKVEVPDQEWDRKHALTLEKEMLGLYVSGHPLDGFEASLDAQIDTPL 1013 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFF 1032 + +++ ++ S ++ +KG+ VT + + + E F Sbjct: 1014 TTVLSGELPDRKTVKVGGIISSVDRRVDKKGNPWAIVTIEDQHSAQAELLVF 1065 >gi|21242159|ref|NP_641741.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|21107574|gb|AAM36277.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str. 306] Length = 1196 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + + +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVGAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv. campestris] Length = 1219 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 604/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 24 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 83 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 84 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 131 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 132 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFAEGRADLAEQQL 189 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 190 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 249 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT+ +A+RC+ +++ Sbjct: 250 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 309 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 310 YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 365 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 366 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 425 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 426 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 485 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 486 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 545 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 546 NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 605 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 606 TIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLK 665 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++YQE Sbjct: 666 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQE 725 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 726 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLM 785 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 786 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 845 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 + ++PP VN F+ + I Y L AIKGVG I+E + P+ +L DFC+R Sbjct: 846 LTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTR 905 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 906 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 965 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 966 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKIL 1025 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1026 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1081 Query: 1031 FF 1032 F Sbjct: 1082 AF 1083 >gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T] gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T] Length = 1174 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 413/1047 (39%), Positives = 600/1047 (57%), Gaps = 40/1047 (3%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P FVHL++HS YS+ +G + L+ + AAD PA+ ++D NLF ++F + A Sbjct: 15 PSAPRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGK 74 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 GI+PI+G I + ++L+ GY +L EL++R YL ++ Sbjct: 75 GIKPIVGVDAWIRNEAERDKPQ----------RVLLICKNRAGYGQLCELLTRAYLENKH 124 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + W + L+ L+G SG I A + +AE+ + +LF D Y+ Sbjct: 125 RGRAEMRREWFENGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIE 184 Query: 186 LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR H G + Y V+LA LP+VAT+ FL ED++AH+ + +A V++ K Sbjct: 185 IQRAGHPGTESYIRHA-VELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADK 243 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T + YLK+++EM +F+DLPEALEN VEIARRCS +Q+ LP F E Sbjct: 244 RRPRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGM- 302 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ L +A GLE RLAQ + Y QRL FE + I +M F GYFLI Sbjct: 303 ---TLDDFLVAEAKKGLEERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLI 359 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQW K N +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFD Sbjct: 360 VADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFD 419 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD R VI YV+ +YG + V+QI TFG++ +KA +RDVGR L +PY DRL KLI Sbjct: 420 IDFCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLI 479 Query: 480 PNDPAHPVS-LQAIADDSRFREAR---LADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P + A PVS +A + + E SV L ++Q LEGL R+ HA G++I Sbjct: 480 PIEGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIA 539 Query: 536 DRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L+ P+Y D PV+QF+ +E GL+KFDFLGL+ LT+++ +L+++A+ G Sbjct: 540 PGKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEG 599 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 + DL + F+D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPG Sbjct: 600 SRPDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPG 659 Query: 654 PIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + K ++I HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD Sbjct: 660 PLGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGAD 719 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK +EM K + GA + G +A +F+L+ KFA+YGFNKSH AAYAV Sbjct: 720 MLRRAMGKKKADEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAV 779 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++Y TAW+K H+ F+AA+M+ ++DN + +K F +D I+++PP VN F Sbjct: 780 VTYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTLANGIKVLPPDVNASDYRFVPV 839 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 D + I Y L A+KGVG R I+ A F L DFC RVD + +NRRV+E+L+ AG Sbjct: 840 DRKIIRYGLGAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAG 899 Query: 890 ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 A+D G R QL+ ++ + A+ N +F K Sbjct: 900 AMDTLPGHKGLDRAQLMATVALAMEAAEQAAANAMQG--GLFDLMPEAAGAAPEFAKVRA 957 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 R + E+ +GF+ SGHP + +KP +R+ + + + LA +V+ ++ Sbjct: 958 WTERERLKEEKLAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRDIT--MLAGVVMEQR 1015 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K +G + +V + + E + Sbjct: 1016 TKVGNRGK-MAFVLLDDGTEPREVTVY 1041 >gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1144 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ K IHPL++ +L T G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y + ++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|294666388|ref|ZP_06731634.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603830|gb|EFF47235.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1196 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGDGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|294625959|ref|ZP_06704571.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599754|gb|EFF43879.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1196 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|313669043|ref|YP_004049327.1| DNA polymerase III, alpha subunit [Neisseria lactamica ST-640] gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica 020-06] Length = 1144 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + MV F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ K IHPL++ +L T G+++YQEQVMQ+AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y + ++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|325916626|ref|ZP_08178889.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325537180|gb|EGD08913.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 1195 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 412/1080 (38%), Positives = 602/1080 (55%), Gaps = 76/1080 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G +DY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 LA V+ ++ KG +V + E + F Sbjct: 1004 ASQQRGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECSAF 1059 >gi|71276388|ref|ZP_00652665.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon] gi|71162850|gb|EAO12575.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon] Length = 1193 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHTGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + + F + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIP+ + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+R Sbjct: 824 LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + + Sbjct: 884 VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 GT + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|78047019|ref|YP_363194.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035449|emb|CAJ23094.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1196 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 602/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + +LNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTARLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN] gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923] gi|14194699|sp|Q9X7F0|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae] gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae] gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923] Length = 1177 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 327/1061 (30%), Positives = 521/1061 (49%), Gaps = 41/1061 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 SFVHL H+ YS+L+GA + + ++ Q PA+ +TD N+F A EF A AG Sbjct: 2 NQSSFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAG 61 Query: 67 IQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 I+PIIG + I + + ++ A G + L +L Sbjct: 62 IKPIIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLS 121 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Q + R+ + E EG+I+ TG SG + + A + +++ Sbjct: 122 SLASFEGQLSKWSRMDAELIGEY-AEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWRE 180 Query: 177 LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234 + G D ++ L H ++ ++ + +P +ATN+ +++ + H+ L+ V Sbjct: 181 IVGPDNYFLELMDHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVTRDAVHNHEALLCV 240 Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 +S +R + D Y + + D + Sbjct: 241 QTGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEPRN 300 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 + + ++ + LR++ AGL+ R G Y +R +E++VI F Sbjct: 301 RMPVFPVPVGHDQASWLRHEVDAGLKRRFPDG------PPNGYVERAAYEIDVICDKGFP 354 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFLIVAD + A+ I VGPGRGS AGS+ AYAL ITDIDP+ LLFERFLNP+R S Sbjct: 355 AYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFLNPERTS 414 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472 MPD DIDF RR E++RY +K+GH+RVAQ+ITFG+++ KAAL+D R Q ++ Sbjct: 415 MPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAMA 474 Query: 473 DRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 DR+ K P A + + + + R D V + + ++ LEGL R Sbjct: 475 DRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARGLEGLIR 534 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583 +A HA +++ PL++ +P+++ + +T ++ E GL+K DFLGL+ LT++ Sbjct: 535 NAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIG 594 Query: 584 KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 +++ + RG+ +DL +P DD TY LL TLG+FQL+ MR L MQP ED Sbjct: 595 DAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFED 654 Query: 643 IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696 I+A+++LYRPGP+ Y +RKN ++ I IHP ++ L ET G+I+YQEQ+M Sbjct: 655 IVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIVYQEQIM 714 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 +IAQ ++GYSL+ AD+LR+AMGKK +E ++K+ E F G NG S +++++ F Sbjct: 715 RIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALWDIILPF 774 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 ADY FNKSHAA Y +ISY TA++K ++ E++A +T D+ +K + D R+F I + Sbjct: 775 ADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCRKFGITV 834 Query: 817 MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875 +PP VN +DF I Y L A++ VG +++ A F D+ +++D Sbjct: 835 LPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYLNKIDIT 894 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 N++V ESL+ AGA D G+SR L + +K ++F G Sbjct: 895 SCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEAIGQFDLFGGTDGGTD 954 Query: 936 DKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992 T++ + E+ +LG Y SGHPL+ +L + Sbjct: 955 AVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPTILDGGVSND 1014 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +R+ ++ + ++ + G + E FFP Sbjct: 1015 TQVRVGGILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFP 1055 >gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703] gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703] Length = 1144 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+++G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ R+ Q + A+ +Y++RLDFELN+I +MKF GYF Sbjct: 290 LSL----DDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L S+ + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDASMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y + ++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVHQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + E Sbjct: 998 -IAFVSLEDLSGLVEIMV 1014 >gi|195953981|ref|YP_002122271.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933593|gb|ACG58293.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1] Length = 1201 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 399/1085 (36%), Positives = 577/1085 (53%), Gaps = 76/1085 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA+ + ++ K A+AITD NLF + F ++ A GI+P Sbjct: 3 DFVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 IIG + + +G I+LL G + L++L S ++ + Sbjct: 63 IIGMEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKLSSIAFI-EGFY 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI L++ EGLI LT G + ++A + FK +FGD LY+ L Sbjct: 122 YKPRIDYEVLEQ-HAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLEL 180 Query: 187 Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q H ++ +A + + ATN+ +L EED AH+VLMA+ + + Sbjct: 181 QSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELGE 240 Query: 246 PRVTPDHYLKNRSEMVS------IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + S +S+ +AL NTVEI+ + + L + +F E Sbjct: 241 DAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEFF 300 Query: 300 -CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 DDI + LRN AV GL+ R+ + I+K ++Y RL++EL VI M F YFL Sbjct: 301 KGDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDSYFL 360 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+DFI W+K NNIPVGPGRGS AGS+ A+AL ITD+DPL+ L+FERFLNP+R+SMPD Sbjct: 361 IVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISMPDI 420 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DFC D RD+VI YV+ KYG + VAQIIT+ +++AK LRDV RA+ M Y D L KL Sbjct: 421 DVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVLAKL 480 Query: 479 IP--NDPAHPVSLQAIADDS-------------------RFREARLADPSVDRLLEISQK 517 IP N +SL+ + +FR+ DP + L+EIS K Sbjct: 481 IPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEISIK 540 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDF 573 LEGL RH S HAAGIVI +PL +L P+Y D + TQ++M +E+ GL+K DF Sbjct: 541 LEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVKMDF 600 Query: 574 LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGLKTLT L K + + Q V +D + F++ E Y L T T+G+FQLES GMR+ + Sbjct: 601 LGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMRELI 660 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVII 690 + ++PD EDI+A ++LYRPGPI + +V KEK+V ++ +LKET G+I+ Sbjct: 661 KRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYGLIV 720 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQ+M I+ +L+G+++ EAD LR+A+GKK + M K K+ FI + + G K ++ Sbjct: 721 YQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIEKLW 780 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + +FA Y FNKSH+ AY IS+ TA++K +YP EF A + E + + I +DA+ Sbjct: 781 SEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSDKKFI-NLLKDAK 839 Query: 811 QFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI--MEASADKPFDSLED 867 F I+++PP VN VDFK+ I + L IKGVG TARHI M+ + F S +D Sbjct: 840 SFGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLSFQD 899 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCF-----GYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 F D++K+N++VLE+L AGA D +R L L + + Sbjct: 900 FTKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRL-------LNSQDISSIA 952 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IK 981 ++F + + E+ +S + E+ VLGFY SGHPLD Y IL I Sbjct: 953 QRSLFGIKASKST-----EQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNKDIT 1007 Query: 982 GYEES---------VATIRGNNI----RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 E+ + + G N + ++ Q KKT+ GS + + E Sbjct: 1008 NIEDIDFDNMPNQAIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTDIVE 1067 Query: 1029 ANFFP 1033 FP Sbjct: 1068 VVVFP 1072 >gi|298372024|ref|ZP_06982014.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298274928|gb|EFI16479.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 1320 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 354/1159 (30%), Positives = 573/1159 (49%), Gaps = 146/1159 (12%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 SFVHL VHSS+S+L+G + +++DK + P IA+TD +++ EF Sbjct: 2 SFVHLHVHSSFSVLDGMSRIEDLVDKAIKYEMPGIALTDHGSMYGIKEFLDYVKKVKKSA 61 Query: 67 -------------------IQPIIGCQLDIDMQD----------NLKMTNQGKTPFPTVP 97 +PI+G + + L+ N+ + Sbjct: 62 KEQLQKGKISEEECARIQSFKPILGVEAYCAARTLYDKDKNKKLFLERKNKDIIVDMSGF 121 Query: 98 SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157 ++LL +GYQ L +LVS + +D Q RI + L+ +EGLI+ + G I + Sbjct: 122 HLLLLAKNKKGYQNLCKLVSISW-VDGFYQKPRIDKNVLKTY-SEGLIVSSACLGGEIPQ 179 Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YDRYRESQVVQLAYT 206 N AE+ + F+ +FGD Y+ +Q H+ + ++ +LA Sbjct: 180 YILNNEIDKAEETINWFRSVFGDDFYLEVQLHKPTRPEISNETYLNQQRVNEEIYRLARK 239 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266 +VATN+ F+ E +AH+ L+ ++ +S DR T + Y+K +M +F++ Sbjct: 240 TGTKVVATNDIHFVEAEHADAHERLVCLSTGKKISDTDRMLYTKEEYMKTPEQMRELFAE 299 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------------------- 306 PE ++NT+E+ + +PI+P+F E + Sbjct: 300 HPEVIDNTLEVLSKVELFSLDSSPIMPKFDIPEEFGTVEGYRQQFTEQDLIAEFSRTAEN 359 Query: 307 --------------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 E + L G + R A R+R Sbjct: 360 KPLDEEQAAKRIAELGGVEKLYRIKLEADYLTKITYDGAKERYAD-------ITDQIRER 412 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +DFELN I M F GYFLIV DF+ A++ N+ VGPGRGS AGSV AY L IT+IDP ++ Sbjct: 413 IDFELNTIKSMGFPGYFLIVQDFVAAARQMNVWVGPGRGSAAGSVVAYCLKITNIDPFKY 472 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNPDR+S+PD DIDF D +V+ +V +KYG E VA II +G++ K A+ D Sbjct: 473 DLLFERFLNPDRISLPDIDIDFDNDGLSQVLEWVTHKYGKECVAHIINYGTMATKLAITD 532 Query: 461 VGRALQMPYSQVDRLCKLIPNDP--------AHPVSLQA---IADDSRFREARLADPSVD 509 VGR ++P ++V+ K+IP+ + + + P++ Sbjct: 533 VGRIQEIPLNEVNNFKKIIPDSLENYKDEKTGKTPKMNISNILKYSKEVQRWCKEKPAIA 592 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL-------PVTQFNMKW 562 +++ + +LEG R HA GI+I L+ VP+ D VTQ++ Sbjct: 593 EMMKYADQLEGTVRQTGVHACGIIIAPDDLTNFVPLSTAKEKDKSKKDTEVLVTQYDGHV 652 Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621 IE+ GLIK DFL LKTL+++++++ + + + + +D++ I ++D T+ L T+G+F Sbjct: 653 IEQIGLIKMDFLALKTLSIMKETVANIKKSKNIDLDINNIDWNDKATFELFAQGNTIGVF 712 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681 Q ES+GMR+ L ++P IED+IA+ +LYRPGP+D I + +RK+G+ I P+++ Sbjct: 713 QFESTGMRKYLMQLKPTSIEDLIAMNALYRPGPMDYIPDFIDRKHGRMPITYDIPIMEQY 772 Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741 LK+T G+ +YQEQVM +++ L+G++ ++D LR+AMGKKIK + + K +FI G NG Sbjct: 773 LKDTYGITVYQEQVMLLSRQLAGFTRGQSDQLRKAMGKKIKAMLMELKPKFIDGGVGNGH 832 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + I I+E KFA Y FNKSH+ YAV++YQTA++KTHYP EF+AA++TL + + Sbjct: 833 DRNILEKIWEDWEKFASYAFNKSHSTCYAVLAYQTAYLKTHYPAEFMAANLTLNKGKITE 892 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-D 859 + KF ++ + I ++ P VN + F V I + L IK VG T I+E + Sbjct: 893 VNKFMEECKIMKIPVLLPDVNESDMLFTVNTKGEIRFGLGGIKNVGEATVEGIIEERKNN 952 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS---LDNIQKYAQWV 915 F S+ DF RV+ K N++ +ES +GALD F R QS ++N+ ++ + Sbjct: 953 GSFKSIFDFLERVNLKSCNKKAIESFALSGALDSFTDMKREDYFQSEETINNLMEWGRKA 1012 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + R++ ++F E+ + K + R +E+ ++G Y S HPLD Y+ I+ Sbjct: 1013 QAGRSSLQNSLFGEEEFDHT-YPQFPKAEAWSDLKRLNSEKDLIGIYLSAHPLDEYRSII 1071 Query: 976 RKMGIKGYEES----------VATIRGNNIR------------LAAMVVSKQQKKTRKGS 1013 + E + TI N I + ++V + ++KG+ Sbjct: 1072 QYGCSHSIAELKSIETELKQELDTIPNNEILSARIKARQVDFCVGGIIVHTSIQTSQKGN 1131 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + G + + E F Sbjct: 1132 QYGIFVLEDYTDQIEFRLF 1150 >gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624] gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624] Length = 1186 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 375/1038 (36%), Positives = 578/1038 (55%), Gaps = 46/1038 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + +++ D+ PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RAGEEDFIQEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ + K EM+ +FSD+P A+ENT IA+RC+ L++ LP + + I + Sbjct: 226 SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRGNDP 581 Query: 598 LS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 L+ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP+ Sbjct: 582 LNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPM 641 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LRR Sbjct: 642 DLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRR 700 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 AMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYH 760 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 TAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDKT 820 Query: 835 IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALDC Sbjct: 821 IVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDC 880 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 G R L+ L + A+ NR + ++F + + + + VR + Sbjct: 881 LGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLK 938 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ + Sbjct: 939 GEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP----N 994 Query: 1014 RIGWVTFSEPAKEYEANF 1031 R+ V + E + Sbjct: 995 RVVIV-LDDGTARIEVSC 1011 >gi|50085210|ref|YP_046720.1| DNA polymerase III alpha [Acinetobacter sp. ADP1] gi|49531186|emb|CAG68898.1| DNA polymerase III, alpha chain [Acinetobacter sp. ADP1] Length = 1187 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 382/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ D PA+A+TD +NL +A++F GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ I LL T +G++ L E+VSR ++ Q Sbjct: 63 LGSVVRLNDPEH---------------RITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q AE L +++ FG+R+Y+ L R Sbjct: 108 VQKEWILEQHQD-IIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQ 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA + + +VA N+ F+ +D++AH+ + +A V++ RPR Sbjct: 166 RAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + Y K SEM +FSD+P A+ENT IA+RC+ LQ+ LP + + I + Sbjct: 226 SSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE RL + Y +R+++E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P QAI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 522 KITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSEI 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA ++ EM N + I D R ++++PPSVN F D R Sbjct: 761 HTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDER 820 Query: 835 -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ + P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C R L+ L + A+ +NR ++F + + + + VR Sbjct: 881 CLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+P L+ E T RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ T + E + Sbjct: 995 NRMVI-TLDDGTARIEVSC 1012 >gi|212550708|ref|YP_002309025.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548946|dbj|BAG83614.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1229 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 371/1100 (33%), Positives = 570/1100 (51%), Gaps = 83/1100 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 FVHL VHS YS L+G S+ ++DK + A+A+TD N+F EF Sbjct: 4 FVHLHVHSYYSQLDGMSSITGLVDKACHYRMKALALTDHGNMFGIKEFYDCIKKKNKNLH 63 Query: 67 ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+PI+G + + + + + + ++LL +GY+ L +LVS ++ Sbjct: 64 KDQKIKPILGVEAYVARRTRFDKSKKVDS---NGWHLILLAKNKQGYKNLCKLVSISWI- 119 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDR 181 + RI L++ +EGLI + G I + ++Q AE+ +L FKK+F + Sbjct: 120 EGFYYRPRIDKECLEQY-SEGLIATSACLGGEIPQKILERENTQEAEQAILWFKKVFEND 178 Query: 182 LYVNLQRHRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 Y+ LQRH+ +++LA T + ++ TN+ F+ EE EAHD Sbjct: 179 FYLELQRHQTNKENSDQTVFLKQTVVNQSLLKLAKTTDTKIICTNDVHFIEEEHAEAHDR 238 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 L+ + ++ R R T + K+ EM +IFSDLPE+L NTVEIA + Sbjct: 239 LICLGTGKYLNDPKRMRYTKQEWFKSIEEMNAIFSDLPESLGNTVEIADKIEPYNIDLET 298 Query: 291 ILPRFIEKECDDIQKEE-----ENELRNKAVA----------GLEVRLAQGAIAK----- 330 ++P F E ++ E LR + G + A Sbjct: 299 VMPIFSIPESFATEETYCTKYTEETLRQEFNKEDKSRFDKLGGYNKVIRIKLEADYLKEL 358 Query: 331 ----------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380 +RL+FEL + M F GYFLIV DFIQ A+ + VGPGRGS Sbjct: 359 TLQKAKNRYGNPIPNAILERLEFELETMKTMGFPGYFLIVQDFIQAARNMGVSVGPGRGS 418 Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440 AGSV AY L ITDIDPL++ LLFERFLNPDR+SMPD DIDF D R +++R+V KYG Sbjct: 419 VAGSVVAYCLEITDIDPLKYDLLFERFLNPDRISMPDIDIDFDDDGRMDIVRWVTKKYGK 478 Query: 441 ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS--------LQAI 492 E+VA I+T+G++ K+++RDVGR + ++ ++L KLIP+ S I Sbjct: 479 EKVAHIVTYGTMATKSSIRDVGRVQGLSMTETEKLTKLIPDRLPEDESGQIPKINIKNCI 538 Query: 493 ADDSRFRE-ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM----YR 547 S RE + ++ L+ ++ LEG R HA GI+IG L+ +P+ + Sbjct: 539 KYISELREVRYSNNKNLSDTLKYAEMLEGTVRQTGIHACGIIIGADDLTNFLPLATVKEK 598 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D+ VTQ+ IE GLIK DFLGLKTL++++ ++ + + + +D++ IP DD Sbjct: 599 RTNEDILVTQYEGSMIESIGLIKMDFLGLKTLSIIKNTIANVKRSKNKTIDINHIPNDDK 658 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY L + T+G+FQ ESSGM++ L ++P ED+IA+ +LYRPGP+ I + NRK+ Sbjct: 659 LTYELYSRGQTIGVFQFESSGMQKYLRELRPTQFEDLIAMNALYRPGPMAYIPDFINRKH 718 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 K I+ P ++ LKET G+ +YQEQVM +++ L+G+S ++D LR+AMGKK+K +M+ Sbjct: 719 EKNSIIYDFPEMESRLKETYGITVYQEQVMLLSRDLAGFSRGQSDELRKAMGKKLKNKME 778 Query: 727 KQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + ++FI GA+KNG K I+ KFA+Y FNKSHA Y+ ISYQTA++K HYP Sbjct: 779 QFHDKFIQGATKNGFGPKKKLEKIWNDWTKFAEYAFNKSHATCYSWISYQTAYLKVHYPA 838 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 EFLAA++T DN+ +I KF + R I+++ P +N ++F V + I + L IKG Sbjct: 839 EFLAANLTHNRDNIVEITKFIDECRAMGIRVLGPDINESELNFTVNKEGHIRFGLGGIKG 898 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902 VG I++ + F ++ DF R++ N++ +ESL +G D F G R Q Sbjct: 899 VGKNAVETIVKEREENGAFKNIFDFIERINLTACNKKSIESLSLSGTFDSFIGIKREQFF 958 Query: 903 QS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 ++ + +Y + ++ + ++F + K+ + N+ R E Sbjct: 959 AENSNGETFIETLIRYGNKFQLDKNSDIGSLFGNSDPMGIAKLEIPLKDEWNNIERLNKE 1018 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKG 1012 + +LG Y S HPLD Y IL+ + + G + L MV + ++ T+ G Sbjct: 1019 KDLLGVYVSSHPLDEYYLILKYICTLRINDFEKAKITQCGQELILGGMVTNYREGHTKAG 1078 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 S G + + E F Sbjct: 1079 SSFGILKLEDFTGSREIPLF 1098 >gi|302544658|ref|ZP_07297000.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302462276|gb|EFL25369.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 1180 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 338/1072 (31%), Positives = 527/1072 (49%), Gaps = 51/1072 (4%) Query: 5 LEKSPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + + + F HL VH+ YSLL+GA L ++ IA+TD NL A +F Q+A Sbjct: 1 MPQPATRPFTHLHVHTQYSLLDGAARLKDMFKACQQMGMSHIAMTDHGNLHGAYDFFQQA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRL 112 AA I PIIG + + + + + + G L Sbjct: 61 TAAAITPIIGIEAYVAPESRRSKRKVRWGQPHQKRDDVSGSGGYTHKTIWAADRTGLHNL 120 Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 L S Y ++ R+ + E GLI TG SG + A K Sbjct: 121 FRLSSDAYAHGWLQKWPRMDKEVIAE-HAAGLIASTGCPSGEVQTRLRLGQFDEALKAAS 179 Query: 173 TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG DR ++ L H +R ++++ +P + TN+S + + +AHD Sbjct: 180 AYQDIFGRDRYFLELMDHGIEIERRVRDGLLEVGRKLGIPPLVTNDSHYTYAHESQAHDA 239 Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 L+ + ++ DR R Y ++ + D +A + + + V Sbjct: 240 LLCIQTGKSLAVADRFRFDGTGYYLKSADEM-YAIDSSDAWQEGCRNTLLVAEQVDVTGW 298 Query: 291 ILPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 R + D E R + G+ R G +D + +E++VI Sbjct: 299 FAKRDLMPRFDVPEGYTEVTWFREEVRRGMARRFPGGV------PEDREKLAAYEMDVII 352 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+ L+FERFLN Sbjct: 353 QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLN 412 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD DIDF + RR EVIRYV KYG ++VA I T+G+++AK A++D R L PY Sbjct: 413 PERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 472 Query: 470 SQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520 + DR+ K +P D P+S + R DP V ++++ ++ +EG Sbjct: 473 AMGDRITKAMPADVFGKGIPLSGITDPEHPRYGEAGEVRSMYEGDPDVKKVIDTARGVEG 532 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L R HAAG+++ P+ VP++ + +TQ++ E GL+K DFLGL+ LT Sbjct: 533 LVRQMGVHAAGVIMSSEPVVDHVPVWVRHTDGVTITQWDYPTCESLGLLKMDFLGLRNLT 592 Query: 581 LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++ + +G+ + L +P DD T+ LL TLG+FQ + S MR L M+P Sbjct: 593 IMDDAVKLVRANKGIDLKLLDLPLDDPTTFALLGRGDTLGVFQFDGSAMRSLLRLMKPSH 652 Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQE 693 EDI A+ +LYRPGP+ + Y RKNG+++I IHP + +L T G+++YQE Sbjct: 653 FEDITAVTALYRPGPMGMNSHINYALRKNGQQEITPIHPGVEDALKEVLDITYGLVVYQE 712 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+ F G G S ++++L Sbjct: 713 QVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFIPFRDGCRARGYSDDAVQAVWDVL 772 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y +NK+HAAAYA++SY TA++K ++P E++AA +T D+ +K + + R+ Sbjct: 773 VPFAGYAYNKAHAAAYALVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAVYLNECRKMG 832 Query: 814 IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871 I+++PP VN DF GD+ I + L A++ VG I+ A + S DF + Sbjct: 833 IKVLPPDVNESEADFTPRGDDTIVFGLTAVRNVGQNVVDSIIRRRRAAGRYASFPDFLDK 892 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V++ N+R +ESL+ AG D G++R L + + V++ ++F Sbjct: 893 VEAVACNKRTIESLIKAGGFDALGHTRKGLTARYEPMVDTVVAVKRKEAEGQFDLFGGGY 952 Query: 932 GTFSDKITLEKF--------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G S + E+ +LG Y S HPL + +L Sbjct: 953 GDGSGDGDSPALGLDVEFPDDEWEKAYLLAQEREMLGLYVSDHPLFGVEHLLSDRADAAI 1012 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + + +V Q+K T++G+ T + A + FFP Sbjct: 1013 AQLTGGEHADGAIVTIGGIVSGLQRKMTKQGNAWAIATVEDLAGSLDCLFFP 1064 >gi|257453752|ref|ZP_05619033.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60] gi|257448844|gb|EEV23806.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60] Length = 1189 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 389/1059 (36%), Positives = 601/1059 (56%), Gaps = 65/1059 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVH +H+ +S+ + + + ++ AD Q A+AI+D +NL++ ++F + AGI+P Sbjct: 2 AFVHFGIHTEFSITDSIVRIKALVKAAKADNQLALAISDLSNLYATVKFYKACLDAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ ++ + LL S GY+ L +VS+ ++ Q Sbjct: 62 IIGSEVWLENDSTT---------------VTLLASNQVGYKNLTNIVSKGFVDGQVMGKP 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I W+ E +EG+I+L + +A + A+ L ++ F DR+Y ++R Sbjct: 107 IIQRDWIFER-SEGVIVLF-TEKSDVGQAMLSAHPEKADSLLQQWQTTFADRVYFAIKRT 164 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R + Q ++++ ++P++A N+ FL+E+D+EAH+ + +A+S V++ +RPR Sbjct: 165 QRANEDRFIEQAIRMSNAFDVPIIAHNDVRFLTEDDFEAHEARVCIANSQVLADPNRPRD 224 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +P+ YLK + +M ++FSD+P ++NT+++A+RC+ I+ + LP F E D I Sbjct: 225 YSPEQYLKTQDKMTALFSDMPAVIDNTLDLAKRCNVIIHMGHHDLPEFPIPEGDTI---- 280 Query: 308 ENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E R A GLE RL + + + Y +RL+FEL I M F GYFLIV Sbjct: 281 ETFFRRTAQEGLEKRLEKLYPIEKRDDSWAEKRKPYDERLEFELTTILNMGFPGYFLIVM 340 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+W+K N++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D Sbjct: 341 DFIRWSKANDVPVGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDVD 400 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + RD VI YV KYG E V+QIITFG++ AKA +RDV R Y D++ KLIP Sbjct: 401 FCIEGRDRVIDYVAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKISKLIPK 460 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGD 536 P + A+ + + ++ ++D + E++ +LEG+ R HA G++I Sbjct: 461 TPGISL-ADAVEAEPQLKDLLNNPDNMDYEDANEIWEMAVRLEGITRGVGKHAGGVLIAP 519 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592 ++ +Y D PV+QF+ +E GL+KFDFLGL+ LT++ ++ + R Sbjct: 520 TKITDYSAIYCDE-EGHPVSQFDKDDVEAVGLVKFDFLGLRNLTVINAAVKNINARRAKE 578 Query: 593 -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 +DL +P DD TY LL T +FQLES+GM++ L ++P IED+IA+ +LYR Sbjct: 579 QQPPLDLETLPLDDKPTYSLLQDAHTTAVFQLESTGMKKYLAKLKPTNIEDVIAMCALYR 638 Query: 652 PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+D +V Y +RK+G+E+++ H ++P+L+ T GVI+YQEQVMQI+Q ++GYSL Sbjct: 639 PGPLDAGMVDMYIDRKHGREEVIYDHDRLEPILENTYGVIVYQEQVMQISQAMAGYSLGG 698 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F+ GA GI +A +F+L+ KFA YGFNKSH+AAY Sbjct: 699 ADMLRRAMGKKKPEEMAKQRSIFVEGAIGQGIDDKLAGGVFDLMEKFAGYGFNKSHSAAY 758 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF 828 V++YQTA++K +YP EF+AA +T +M+N + + F D R+ +++ PSVN F Sbjct: 759 GVLAYQTAYLKHYYPAEFMAAVITSDMNNTDGVVFFINDCRENFGLKVENPSVNHSNWAF 818 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + I Y L IKGVG I+EA A F L DFC RVD++K+N+R LE+LV Sbjct: 819 VPINPTTIVYGLGGIKGVGEGAVESIVEARNAGGEFTDLYDFCRRVDTRKVNKRTLEALV 878 Query: 887 FAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 AG D F R LL L + A+ N + ++F+ + Sbjct: 879 KAGCFDSFAPKLRPDLPADEAYHIRGALLAELPKAVQAAEQQRSNDSLGMIDLFSDIQEV 938 Query: 934 FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993 + L + V + R + E+ LG Y +GHP+D Y+ L++ K + T G Sbjct: 939 TAP-PPLPREPVWTDAERLKGEKDTLGLYLTGHPIDSYRDELKRYTPKTLGDLSETSYGE 997 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + A +++ R +T + E + + Sbjct: 998 TVFFAGLILDVANFGNRS-----VITLDDGTGRIEVSCY 1031 >gi|237750345|ref|ZP_04580825.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879] gi|229373875|gb|EEO24266.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879] Length = 1268 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 371/1077 (34%), Positives = 591/1077 (54%), Gaps = 65/1077 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L+ + +I ++A+TD N+F A+EF + AGI+PI Sbjct: 9 FTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I +++L K+P I L EGY+ L+ L S+ ++ ++ R Sbjct: 69 IGIEAYIHNKEDLG----DKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQG-FYRTSR 123 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-----------------FNSSQVAEKRLLT 173 I L+E ++G+I + +G I A++ + Sbjct: 124 INKKILREY-SKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIHE 182 Query: 174 FKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++ +FGD Y+ + RH D+ ++ +++L+ L+ATN++ + ++ED + M Sbjct: 183 YQDIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAAM 242 Query: 233 AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 +A +T ++ R R T + Y+K+ +M+ +F D+PEA+ NT EIA +C + + Sbjct: 243 MIAMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDDK 302 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG------YHAQDYRQRLDFEL 345 P + E L + A + + K + Y +RL E+ Sbjct: 303 NPPTPPSFKFAKEYAENEGLTIQDEAEYFAYKCKQGLVKRLEQVEKDKHEIYHKRLQEEI 362 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 ++I +MKF GY LIV DFI +AK+N IPVGPGRGS AGS+ AY L ITD+DP++++LLFE Sbjct: 363 DIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKYNLLFE 422 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPD D DFCQ RR E+ Y++ KYG VAQ+ITFG + A+ +RDV R Sbjct: 423 RFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRDVARIY 482 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDR------ 510 M DR KLIP+ + + + +E + Sbjct: 483 GMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDEKNRGL 542 Query: 511 ---LLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEK 565 + E++ +LE L R+ HAA +V+ ++ L VP+Y R + VTQ++MK++E Sbjct: 543 ARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSMKYLEP 602 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 LIKFDFLGLKTLT++Q +LD + ++LS + +D + Y L + TLGIFQLE Sbjct: 603 VDLIKFDFLGLKTLTVIQDALDIIKDTNNIDINLSTLDVNDEKVYRTLRSGNTLGIFQLE 662 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682 SSGM++ +QP I+D IAL++L+RPGP+D+ + Y NRK+G+ + ++P+L Sbjct: 663 SSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYTFKELEPIL 722 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 K T GVI+YQEQVMQI Q++ G+SL EAD++RRAMGKK + M + + +F GA KNG Sbjct: 723 KNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKFADGAEKNGFD 782 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 +T A +F+ +AKFA+YGFNKSH+AAY ++++QTA++KT+Y EF+AA ++ E +E + Sbjct: 783 RTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAMLSSESHKIEAV 842 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS 857 + +AR I+I+PP VNT +F V G +I + L AIKG G + I++ Sbjct: 843 ATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGEGALQSIIDDR 902 Query: 858 AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 F +LEDF ++ D K+++++VLE LV +G+LD GY+R +L +LD I + + Sbjct: 903 KQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLDYICDLGRRMS 962 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + R+ +F E+ ++ ++ ++ E E LG Y SGHPLD ++ + Sbjct: 963 RERSGG--GLFGAEE--LCPELQIKPLPELHNKSLLEYEYESLGIYLSGHPLDDFRSEIE 1018 Query: 977 KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + E G+ + L + Q+K ++ G + + + F Sbjct: 1019 QIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIMDFSGKQPLTLF 1075 >gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256] gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256] Length = 1162 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 467/1041 (44%), Positives = 637/1041 (61%), Gaps = 26/1041 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP FV L+V SSY++LEGA+ I PAIA+ D N L+ + F + A Sbjct: 1 MAFSP-FVPLRVFSSYTMLEGAIEPKAIAKAARDRGFPAIAVADRNGLYGVMAFGEACQA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+QPI+G L + + + P + + L A GY L LVS +L Sbjct: 60 AGVQPIVGALLSVA-----RPGQRLANGAPLIDWLALYAQDARGYHNLCALVSAAHLGRP 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +Q + LS + T+GLI LTGG G + R AE + + LFG+RLY+ Sbjct: 115 VEQEPHVALSDMT-GRTDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYI 173 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + E+ ++ +AY LPLVATN + F+ + + AHD ++ +A S V + Sbjct: 174 ELSRRGDATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESE 233 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR P+ +LK M FSDLPEA+ NT+ IA+RC+F+ + I Sbjct: 234 DRRVSNPEAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPK-----RKPILPSLAGD 288 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E +L+ A AGL+ RLA Q Y +RLD+E++VI +M F GYFLIVADF Sbjct: 289 REGEAAQLKADAHAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKWAKAQDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P Sbjct: 409 ETRRGEVIRYVQEKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 468 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ S D V RL +++++LEGL RH+STHAAG+VIGDRPL QL Sbjct: 469 TDPWTLERALNGVSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++L+++ LA RG+ VDL + Sbjct: 529 VPLYRDPRSDMPVTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLR 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD + Y LL T+G+FQLES GMR+ L ++P DIIALV+LYRPGP+DNI ++ Sbjct: 589 WDDAQVYELLQRGDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFG 648 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG+E I HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL AD+LRRAMGKKI+ Sbjct: 649 ARKNGREPIAYPHPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQ 708 Query: 723 EEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMD Q+E F+ G ++ A +F+L+ KFA YGFNKSHAAAYA++SYQTAW+K Sbjct: 709 AEMDAQRETFVKGCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKA 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837 H+P EF AASM+ + +K+ F D R+ I I PPS+N DF VG + Y Sbjct: 769 HHPHEFFAASMSFDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRY 828 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +L A+KGVG ++ A F SL+DF SR+D K LNRR +E+L AGA DC Sbjct: 829 ALGALKGVGEKAMEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEP 888 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R + + + A R+ +F + + + L + R E+ Sbjct: 889 DRPRAFAGAEALLACANSSAHERSTGQGGLFGGD-IAIAPTLQLPAAEPWTLAERMTREK 947 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI--RLAAMVVSKQQKKTRK 1011 GFYFS HP++ Y+ IL G + Y + V G I +AAMV S + + +++ Sbjct: 948 EAFGFYFSAHPVEQYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQR 1007 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+R +T S+ + +++++ F Sbjct: 1008 GNRFLNLTLSDRSGQFQSSCF 1028 >gi|285018805|ref|YP_003376516.1| DNA polymerase III, alpha chain protein [Xanthomonas albilineans GPE PC73] gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas albilineans] Length = 1198 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 405/1083 (37%), Positives = 603/1083 (55%), Gaps = 79/1083 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + F HL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I + +L +GY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADLLIADGS------------QAPWRLTVLCRNRDGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R +L + V + WL + G++ L L G + R +AE++L Sbjct: 110 SRLLTRAWLEGHRSEGGVALRPEWL-QSGSDNLFAL-AGRNSLAGRLASEGRHDLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R + + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRIFGDGLHLELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+AL+NT+ +A+RC+ +Q+ Sbjct: 228 RVCISSGRVLDDPKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + + ++ +R+++ GL RL + +A G QDY +RL+FEL+ I Sbjct: 288 YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG +RV+QIIT+G++ AKA +RD GR L PY Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + ++ V L++++++LE L R Sbjct: 464 GLVDGVAKLIPNILGITLKDAMGEGKDSEMAAPELIQRYQSEEDVRDLIDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYR----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS P++ D PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R V+++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G++ I+ P + +LK+T G+++YQE Sbjct: 644 DAKPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ + A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP +N F+ + I Y L AIKGVG I+ + SL DFC+R Sbjct: 824 LTVRPPRINASAYMFEAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V+S KLN+R LE+L+ AGA+D +R L+ L + K + + + R + ++F + Sbjct: 884 VESAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGNAD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987 + + L + E+ LGFY SGHP D Y+ +R++ Sbjct: 944 TSAPALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVRELVGCDLGALEKIC 1003 Query: 988 ATIRGNNIR------------------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 A G R LA +VV ++ KG +V + E Sbjct: 1004 AQSNGGRGRSGEGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRIEC 1059 Query: 1030 NFF 1032 + F Sbjct: 1060 SAF 1062 >gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1477 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 356/1101 (32%), Positives = 562/1101 (51%), Gaps = 94/1101 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59 F HL H+ +S+L+ +++ ++ AA + PA+A+TD N+ A F Sbjct: 261 FAHLHNHTQFSVLQSTINIPALIKATAAAKMPAVAMTDRANMMGAFHFVAQVINHNKGVD 320 Query: 60 ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 Q A G I+PI+GC+ + ++ K +V L GY Sbjct: 321 ARNQAAIEKGEVPEEVPIKPIVGCEFFVC------ENHEDKKRKDDGYQVVFLAKNKAGY 374 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L ++ S Y RI + +++ + +I+L+G G I + AE+ Sbjct: 375 HNLAKMSSIAYTKG-FYYVPRIDKAVVEQY-KDDIIVLSGNLYGEISSKLLNLGEKQAEE 432 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 LL +K FG+ YV L RH D ++ LA HE+ L+ATNNS +++++D AH Sbjct: 433 ALLWWKSQFGEDFYVELMRHSQEDEDIVNVSLMALAKKHEVKLIATNNSYYINKKDANAH 492 Query: 229 DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V + ++Y K+ EM ++F+D+PEA+ N E+ + Sbjct: 493 DILLCVKDGEKQATPIGRGRGFRYGLPNQEYYFKSPEEMKNLFADVPEAILNIKEVIDKI 552 Query: 282 SFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYH 333 +LP+F E + ++EE+ LR+ G + G Sbjct: 553 ESYKLAREVLLPKFDIPEEFLVAEDEEDGGKRGENKFLRHLTYVGAKK-------RYGEI 605 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 D +RLDFEL I + + GYFLIV DFI A+ ++ VGPGRGS AGS AY L IT Sbjct: 606 TDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAYCLGIT 665 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 +IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+G++ Sbjct: 666 NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGANQVAQIITYGTMA 725 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDSRFREA 501 AK++++D R L +P + +++ KLIPN + + Sbjct: 726 AKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFNLDEKTLKGALRPDEYEKVVELKML 785 Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561 + + LE +Q LEG R+ HA G++I ++ VP+ SDL VTQF+ Sbjct: 786 ATNNDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDLYVTQFDNS 845 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620 +E AGL+K DFLGLKTLTL++ ++ + R D P DD +TY L T+GI Sbjct: 846 VVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHNIDLDPDNFPIDDAKTYELFQRGETIGI 905 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E+I + Sbjct: 906 FQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDLDACEE 965 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K +FI+ A++ G Sbjct: 966 YLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIAQAAEKG 1025 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 +I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M +++ Sbjct: 1026 HQASILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSDIK 1085 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARH-IMEASA 858 ++ F ++ +Q + ++ P VN + F V ++ + L+ IKGVG I+E + Sbjct: 1086 QVAFFMEECKQMGVSVLGPDVNESDIKFSVNISGQVRFGLSGIKGVGDKAVESIIIERNE 1145 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLDNIQK 910 + S+ DF R +++ +N++ ES V++GA DCF Y R Q ++ + K Sbjct: 1146 SGLYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDCFSYHRAQYFFVGINDKMNGIEKMIK 1205 Query: 911 YAQWVEKNRTNKHENIFAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +A + N + ++F + +L + R + E+ +G + SGHPLD Sbjct: 1206 FANDFQNNEASSQSSLFGAAAADMMISEPSLPVAPEWSLIDRLKYEKDAIGIFLSGHPLD 1265 Query: 970 VYKPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRK 1011 YK L++ + TI+ + + +VV Q+ T+ Sbjct: 1266 NYKLELKEFCQHKVKHLSLVNKIRTGDSNEEVLAEFETIKNRELVVGGLVVLATQRITKT 1325 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G G +TF + E F Sbjct: 1326 GKPFGIITFEDYDDTCELALF 1346 >gi|21234220|ref|NP_639831.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)] gi|13620707|emb|CAC36747.1| putative DNA polymerase III, alpha chain (EC 2.7.7.7) [Streptomyces coelicolor A3(2)] Length = 1213 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 329/1084 (30%), Positives = 542/1084 (50%), Gaps = 66/1084 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66 + SFVHL H+ YS+L+GA L + ++ PA+A++D N+F A EF Q A G Sbjct: 15 ADSFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGS 74 Query: 67 IQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEG 108 ++PIIG + + + + + + + A+G Sbjct: 75 VKPIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGRFTHMTMWATGAQG 134 Query: 109 YQRLIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167 + L + + Q R+ + + E EG++ TG SG + N A Sbjct: 135 LRNLFYMSTEASYTGQFPAGKPRMDMELIAE-HAEGVVATTGCPSGAVQTRLRLNQYDEA 193 Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225 + ++ +FG + ++ L H +R +++LA LPL+ATN++ ++ E Sbjct: 194 RQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYIHESQA 253 Query: 226 EAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 +AHD L+ + + + R R + +YLK +EM ++F++LPEA +NT+ IA R Sbjct: 254 DAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAERVGSY 313 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 +V + + D + +E+ LR + + GL +R + +R + E Sbjct: 314 DEVFDNVDEMPQFPDVPD-GETQESWLRKEVLTGLAMRYGDPV------PTEVLERFETE 366 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI M FS YFL+VAD ++A+ N +PVGPGRGS GS+ AYA IT++ PL LLF Sbjct: 367 MSVIGPMGFSSYFLVVADICKYARDNGVPVGPGRGSATGSIVAYATRITELCPLEHGLLF 426 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R++ PD D+DF +RD+++RYV KYG E A + TFG ++AK A++D R Sbjct: 427 ERFLNPERINPPDVDLDFDDRQRDKMVRYVTEKYGDEYTAMVNTFGKIKAKNAIKDSSRI 486 Query: 465 LQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515 L P+S +R+ K +P D + L I D R +P V +++ + Sbjct: 487 LGYPFSHGERITKALPPDIMGKSIPLDGIFDPEHPRHGEAGEIRTMYENEPDVKTVIDTA 546 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + +EGL R HAA +++ L+ +P++ + +T F+ E GL+K DFLG Sbjct: 547 RGVEGLTRGTGVHAAAVILSKTRLTDRIPLHMRASDGVKITGFDYPSCENMGLVKMDFLG 606 Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFD-----------DHETYHLLTTKGTLGIFQLE 624 L+ L ++ +++ + + ++ P D D +T+ LL T G+FQL+ Sbjct: 607 LRNLGVIDHAIENIRENRGVRLATVDPMDGDSGTVVIPLDDKKTFELLGRGDTFGVFQLD 666 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML 682 GMR L+ M+P EDI A ++LYRPGP+ + Y R+NGK++ IHP + +L Sbjct: 667 GGGMRALLKLMEPSRFEDIAAALALYRPGPMAANAHTNYALRQNGKQEPDPIHPELKEVL 726 Query: 683 KE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 T ++I+QEQ+M IA++L+GY+L AD+LRRAMGKK E + + E+F G Sbjct: 727 DPILGSTHHLLIFQEQIMAIARILAGYTLGGADMLRRAMGKKKPEVLAAEWEKFHDGMKA 786 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 N S+ I++++ F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T D+ Sbjct: 787 NDYSEEAIKAIWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSVGDD 846 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +K + DAR+ + ++PP VN +F + + + L +++ VG ++ A Sbjct: 847 KDKAGIYLADARKLGVTVLPPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIDTVITARK 906 Query: 859 -DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 F S DF + D LN+R +ESL+ AGA D G++R L + ++K Sbjct: 907 TKGKFTSFADFLDKADLPALNKRAVESLIKAGAFDSLGHTRRGLCAVHETAIDAVVPLKK 966 Query: 918 NRTNKHENIFAHEKGTFSDKITLE-------KFSVENSSVRFENEQRVLGFYFSGHPLDV 970 +++FA G D + E+ +LG Y S HPLD Sbjct: 967 AAAYGQDDLFAGLGGGTGDDGESGFGLDVRIDDGEWSRKQLLSTEREMLGMYVSAHPLDG 1026 Query: 971 YKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + IL + +A+ +RL+ ++ Q K T++G+ V ++ E Sbjct: 1027 TEHILAAHRDTTIPDLLASGRTEGTVRLSGLITGVQNKVTKQGNAWAIVNLADRDGTIEV 1086 Query: 1030 NFFP 1033 FFP Sbjct: 1087 LFFP 1090 >gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens NRL30031/H210] gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens NRL30031/H210] Length = 1144 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 392/1038 (37%), Positives = 578/1038 (55%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K R TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPCDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDTPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQIEIMV 1014 >gi|297562140|ref|YP_003681114.1| DNA polymerase III subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846588|gb|ADH68608.1| DNA polymerase III, alpha subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1186 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 332/1071 (30%), Positives = 538/1071 (50%), Gaps = 53/1071 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + SF HL VH+ YS+L+GA L + + A PA+A+TD N+F A EF Q++ G+ Sbjct: 2 ADSFAHLHVHTEYSMLDGAAKLKPLFKEAARLGMPAVAMTDHGNMFGAYEFYQQSKGTGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQ 110 PIIG + + + + + + +L +G + Sbjct: 62 TPIIGIEAYVAPESRFHKKRVFWGRSSGSDDASAEGGKDISGGGRYLHMTMLAQNEKGLR 121 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L + S + + R+ L + E +EG+I+ TG SG + + A Sbjct: 122 NLFRMSSLASM-EGYYMKPRMDLELMSEY-SEGIIVSTGCPSGGVQTRLRLGQEKEAVAY 179 Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 + +FG + +++ L H ++ ++++ ++P + TN+S ++ E AH Sbjct: 180 AAGLQDIFGKENVFLELMDHGVPIEKEVRDGLLRVGRELDIPPLVTNDSHYVYESQASAH 239 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFIL 285 D L+AV + R R Y +E + F + + NT+ +A R Sbjct: 240 DALLAVGVGKNLDDPTRFRFNGSGYYLKSAEEMRGILNFEEWEQGCRNTLLVAERIDPGA 299 Query: 286 QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345 + + + + L + L R G + RQR+DFEL Sbjct: 300 YDAVFAHRDLMPVFPVPEGETQASWLAKEVERLLPTRYPDG------INGEIRQRVDFEL 353 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 +I M F YFL+VAD Q+A+KN I +GPGRGS AGS+ AY L ITD+DPL LLFE Sbjct: 354 GIINEMGFPAYFLVVADICQYARKNGIALGPGRGSAAGSMIAYVLGITDLDPLEHGLLFE 413 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R++MPD D+DF + RR E+I YV YG ERVAQI+TFG+++AKAA++D R L Sbjct: 414 RFLNPERVTMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAVKDSTRIL 473 Query: 466 QMPYSQVDRLCKLIPNDPAHP---------VSLQAIADDSRFREARLADPSVDRLLEISQ 516 MPYS D++ K P + + + R D V +++E ++ Sbjct: 474 GMPYSVGDQITKAFPAAVGGKEIPLEAVTNTEHERYGETTELRNLIDNDAQVAKVMETAR 533 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL R HAAG+++ PL ++P+++ +T F E GL+K DFLGL Sbjct: 534 GIEGLTRGTGVHAAGVILSKEPLLDVIPLHKRDTDGAIITGFPYPQCEDMGLLKMDFLGL 593 Query: 577 KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 + LT++ ++ + + G+ +DL +P DD +TY LL+ TLG+FQL+ MR L+ M Sbjct: 594 RNLTIMDDAVKSIKEAEGIDIDLGKLPLDDRKTYQLLSRGDTLGVFQLDGGAMRNLLKRM 653 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689 +P DI A++SLYRPGP+ + Y +R NG++++ IHP ++P+L ET ++ Sbjct: 654 EPKKFGDIAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPELKDALEPILGETFHLL 713 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M IAQ L+GY+L AD++RRAMGKK KE +++++ +F GA G SK + Sbjct: 714 VYQEQIMAIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAEARGFSKEATQAL 773 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 ++++ FA Y FNKSHAA YA++SY TA++K ++P ++AA +T D+ +K+ + + Sbjct: 774 WDVMLPFAGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKMAVYLAEC 833 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868 R I+++PP VN + F I + + A++ VG I+ F S DF Sbjct: 834 RTQGIKVLPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIRTRTEKGKFSSFTDF 893 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 S+++ N+RV+ESL+ AG D G R +L + + +K + ++F Sbjct: 894 LSKIELAACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVDGMISSKKQEAHGQFDLFG 953 Query: 929 HEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 S I L + + E+ +LG Y S HPL + +L + + Sbjct: 954 GGDDGDSTPIGLNINWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVLARSRDTSIAQ 1013 Query: 986 SVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 VA +R++ ++ ++ + G++ T + E FFP Sbjct: 1014 IVAGEMARERGEVRISGLISKVDKRTNKAGNQWAIATVEDLDASMEVLFFP 1064 >gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970] gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970] Length = 1144 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y + ++ + +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDLSGQVEIMV 1014 >gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834] gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834] Length = 1143 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 394/1038 (37%), Positives = 594/1038 (57%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P ++ L+ H+ +S+ +G L + ++ K +A PA+ I+D N F ++F + Sbjct: 1 MT-APVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G + + +N + +LLV GY+RL EL++R Y+ Sbjct: 60 AGIKPVVGADVWVANPENPEQP----------FRAMLLVRNEAGYRRLCELLTRAYVGTD 109 Query: 125 GK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + WL E G EGLI L+G G + R A + + F D Y Sbjct: 110 RNVAHAELEPQWLAEGGNEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFY 169 Query: 184 VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR + S ++LA LP+VAT+ + FL+ +D++AHD + +A V++ Sbjct: 170 LELQRLPEKPEWETSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLA 229 Query: 242 QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR Y + E+ + F+DLPEAL+NTVEIA+RC+ L + LP+F + Sbjct: 230 DKRRPRDFVAGQYFASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357 + ++ L + + GL RLA + Q +Y+ RLDFEL I +M F GYF Sbjct: 290 MSL----DDYLAHLSNQGLRERLAALYPDEAEREQKLPEYQARLDFELGTIVQMGFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK N PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD Sbjct: 346 LIVADFINWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ+ R VI YV+ KYG E V+QI+TFG+L +KA +RDVGR L++P+ DRL K Sbjct: 406 FDIDFCQNNRGRVIEYVRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S +A+ + + + + + + +KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLEKAMEAEPEIAKVLEEEEAEELMELA-KKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + +F+AQ + Sbjct: 525 GKISDFCPVYQADESASPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQTTGER 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ I D + Y + T +FQ ES+GM++ L +E+IIA VSLYRPGP+ Sbjct: 585 IDVNHIDLTDQQAYEVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 D I + + + +H L++P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DLIPDFIA-RMKGARFEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GI++ A IF+ + KFA YGFNKSHAAAYA+++YQ Sbjct: 704 AMGKKKPEEMAKHREIFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYALVAYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F DAR I+ +PP VN F+ +R Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKLFYDDARDNGIRFLPPDVNHSGYHFQPDAQHR 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A + F SL DFC RV + +NRR +E+LV GA D Sbjct: 824 IRYALGAIKGTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R +LL ++D A+ ++ +F + + + + + Sbjct: 884 IEPNRARLLANIDLAMSNAE--QQEENANQGGLFDMVEDAIAP-LEMIDVPAWGEAELLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E++ +GFYFSGHP + +R+ + +N+R+A + + ++G Sbjct: 941 EEKQAIGFYFSGHPFGPAEKEVRQFAPTRLSQLKP---NDNVRVAGFATAIRSMVGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I ++T + + E Sbjct: 998 -IAFITLEDTGGKAEVMV 1014 >gi|294011725|ref|YP_003545185.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] gi|292675055|dbj|BAI96573.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] Length = 1178 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 469/1046 (44%), Positives = 635/1046 (60%), Gaps = 32/1046 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FV L+V SS+++LEGA+ I + A PA AITD N L+ ++ FS Sbjct: 1 MPHA-GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG + + D L A GY L LVS +L Sbjct: 60 EGVQPIIGAMVGVSRPDRPANAAPVHDWIA------LYAQDAAGYDNLCALVSMAHLDRP 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ I L L E T+GLI LT G G + R F + A + LF RLY+ Sbjct: 114 VEEVPHISLDML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYI 172 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + R + E +++ LAY +LPLVATN + F +EAHDV++ +A S V Sbjct: 173 EICRRFDPIEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETP 232 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR +PD ++K +EM +F DLPEAL NT+ +A+RC+ + I Sbjct: 233 DRRTSSPDAWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E LR +A AGLE RLA+ IA + Y +RL FE ++I +M F GYFLIVADF Sbjct: 288 IEGEAKMLREQATAGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IKWAKDKDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P Sbjct: 408 ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +++ + FR D V RL++ + KLEG RH+STHAAG+VIGDRPLSQL Sbjct: 468 TDPWTLERSLNGVAEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ LA RGV++DL+ + Sbjct: 528 VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLG 587 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ Sbjct: 588 WDDPAVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG+E+I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK Sbjct: 648 RRKNGQEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ RF+ G +K+ I+ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 708 AEMDAQRARFVEGCAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 767 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831 YP EF AASM ++ +K+ F D R+ + + P +N DF V Sbjct: 768 YPAEFYAASMAFDIHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRL 827 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+L +KGVG ++ A F SL+DF R++ + LNRR LESL AGA Sbjct: 828 GFAVRYALGGLKGVGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGA 887 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D R + + + I A + R + +F + +D + + +++ Sbjct: 888 FDGVHPDRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRVPPHQTWSTAD 946 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI--RLAAMVVSKQQ 1006 R E+ GFYFS HP+D Y+ + G K Y A G +AAMV + Sbjct: 947 RMAQEKEAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRW 1006 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++TR+G+R TFS+ + +++A+ F Sbjct: 1007 RETRRGARYAAATFSDSSGQFQASCF 1032 >gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis FRC41] gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis FRC41] gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis C231] gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis 1002] gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis I19] Length = 1186 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 327/1070 (30%), Positives = 531/1070 (49%), Gaps = 49/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + +++ PA+ +TD N+F + F + Sbjct: 1 MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + T + +L AEG + L Sbjct: 61 AGVKPIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E + G+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDADLIAEHAS-GIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G + ++ L H + S+++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290 V +S DR + Y +E + D +PEA +NT+ IA R ++ Sbjct: 240 CVQTGKTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + LR++ + GL VR G Q Y R ++E++VI Sbjct: 300 HTHDRMPIADVPEGHTPTSWLRHEVLEGLRVRFNGG-----EVPQSYIDRAEYEISVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468 +R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D R Q Sbjct: 415 ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQYGQPG 474 Query: 469 YSQVDR---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 Y DR + K IP + R DP V ++ + ++ LE Sbjct: 475 YQIADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ PL + +PM++ +T + E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + R VDL + DD + Y LL++ TLG+FQL+S GM++ L+ MQP Sbjct: 595 TVIGDCIENIKINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPT 654 Query: 639 CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 DI+A ++LYRPGP+ + Y +RKNG++ I IHP +D L ET G+I+YQ Sbjct: 655 GFHDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M+I+Q ++ Y+ EAD R+AMGKK E + KQ ++F+ G NG SK ++ Sbjct: 715 EQIMRISQKVANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKGAVDALWGT 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + + R Sbjct: 775 IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I ++ P VN ++F N I + L A++ VG I++A + F D+ + Sbjct: 835 GISVLSPDVNESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGGFSDFSDYLDK 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +D+ N+RV ESL+ AGA D G+ R LL ++ +K ++FA Sbjct: 895 IDTVACNKRVTESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFG 954 Query: 932 GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G + + + + + + + E+ +LG Y SGHPLD Y+ L Sbjct: 955 GDDASMGNAFAVQIPE-AQWDRKHQLALEREMLGLYVSGHPLDGYEEALDAQTDTQLTTI 1013 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G +++ ++ S ++ ++K GS VT + + + F Sbjct: 1014 LAGELRNGAEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVF 1063 >gi|309790186|ref|ZP_07684758.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6] gi|308227771|gb|EFO81427.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6] Length = 1269 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 343/1068 (32%), Positives = 533/1068 (49%), Gaps = 70/1068 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL VHS YSLL+G S I + A +IA+TD ++ A+EF A AGI+P Sbjct: 3 DFIHLHVHSEYSLLDGYASTKAIAGRAAELGMDSIALTDHGVMYGAMEFYDAAKKAGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127 IIG + + + T +G ++LL GY+ L+ L +R +L K Sbjct: 63 IIGMEAYMAPGSRTEATTRGGK---NYFHLLLLAKNEVGYRNLVRLTTRAHLDGMAKGVF 119 Query: 128 -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L++ EGL++ + +G + + + A + ++ L G + ++ Sbjct: 120 ARPRIDRELLEQYH-EGLVVTSACIAGEVIQQLTAQQRKQAVETAAYYRDLLGAENYFLE 178 Query: 186 LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV--- 240 LQ H ++V++ +PLV TN++ F+ ED E +MA+ + Sbjct: 179 LQLHENTPELEGINDELVRIGEELGIPLVVTNDTHFVRAEDVETQHRVMAMGMNMTHQEF 238 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K H + LENT IA C+ L LP+F E Sbjct: 239 CNKGFKMDESYHIMSGEEMWAKFKRYGTAPLENTRRIADMCNLKLDFGRVQLPQFDLPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 D + LR GL R G +Y RLD EL+VI F Y LIV Sbjct: 299 HD----AASYLRLVCEEGLMKRC------NGNPPANYIARLDDELDVINATGFPDYMLIV 348 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D++++A+ IP P RGS S+ Y L ITD+DP++ LLFERFL+ +R+ MPD D Sbjct: 349 WDYVKYARSRGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSRERLEMPDIDT 407 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR E++ Y+ KYG E VAQIIT+G+L AKAALRD+GR L + S+VDR+ KLIP Sbjct: 408 DFADSRRGEILDYIAGKYGRENVAQIITYGTLGAKAALRDMGRVLGVELSEVDRVAKLIP 467 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + P QA+ ++ P + +++ ++K+EG R+ THA G+V+ PL Sbjct: 468 SLPVGVTISQALERVPELKQIYTTQPHLAEVIDWAKKVEGRMRNVGTHACGVVVSRTPLE 527 Query: 541 QLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 ++VP+ R + + V F + K GL+K D LGL L+++ ++L+++ + G+K++L Sbjct: 528 EMVPLQRTTKDEHAVMASFEGPTLAKMGLLKMDILGLTNLSVVAEALNYIERSTGIKMEL 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + IP +D +T+ L T +FQLES+GM + L ++P ++D+ A+V+LYRPGP++ I Sbjct: 588 ADIPLEDKKTFEALGRGETKNVFQLESAGMTRYLMQLKPTRVDDLYAMVALYRPGPLEQI 647 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y KN I +HP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ Sbjct: 648 PHYIQGKNDPANITYLHPILKPILEDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK KE M + +F G K GIS +A ++EL+ FA Y FN+ HA Y ++SYQTAW Sbjct: 708 KKNKELMAENGAKFKEGCLKKGISAQVADELWELILPFAGYSFNRPHATLYGLLSYQTAW 767 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K +YPVE++AA +T +E + K + R+ + ++PP VN F++ Sbjct: 768 LKVNYPVEYMAAVLTGAGGVIEDVAKAALETRRLGVALLPPDVNHSQKGFEIEPIQGQLP 827 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 N I + LAAIK VG I+EA F +LED C+RVD +N+RVLESL Sbjct: 828 NGVRYQNAIRFGLAAIKNVGEGPLDAILEARTEGGAFSTLEDLCARVDRNAINKRVLESL 887 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKI 938 + AGALD +R Q L LD A +K R ++F ++ +I Sbjct: 888 IKAGALDSLPGTRRQKLTVLDQAISAATEAQKARDVGQASLFDMMGESSGNDGSINVPRI 947 Query: 939 TLEKFSVENSSVR-------------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 L + + ++ N+ P+ + GI E Sbjct: 948 NLPPITTTPADMKEELLWERELLGLNITND-----------PVSQALTGVNWTGITRLNE 996 Query: 986 SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G + + ++ + T+KG + + E FP Sbjct: 997 ITEEHIGKSFKFIGLLSGVRHISTKKGDAMLVGVVDDATGTIEMVVFP 1044 >gi|170729407|ref|YP_001774840.1| DNA polymerase III subunit alpha [Xylella fastidiosa M12] gi|167964200|gb|ACA11210.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 1193 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + + F + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIP+ + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+R Sbjct: 824 LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + + Sbjct: 884 VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 GT + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSMRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147] gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147] Length = 1156 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 399/1032 (38%), Positives = 579/1032 (56%), Gaps = 33/1032 (3%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L+ HS +S+ + + +++ + A+ PA+A+TD N F L+F + AGI+PI Sbjct: 4 IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAGIKPIC 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVR 130 G + I+ + + ++ VLL+ +GY RL EL++ + D+ K + + Sbjct: 64 GADVRIENPEQPEKPHRA----------VLLIRNEQGYIRLNELLTAAFEADDRNKHTPQ 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 I +WL + GL+ L+G G + + A + F + Y+ LQR Sbjct: 114 INQAWLAQGDNSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLP 173 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 + S +++A +LP+VAT+ + FL EDY+AHD + +A + RP Sbjct: 174 EKPDWEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHD 233 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 TP + E + F+D+PEAL N+ EIA+RC+ L + LP F + D+ Sbjct: 234 FTPGQHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLN--- 290 Query: 308 ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR+ A GL+ RL + +Y+ RLDFEL++I +M+F GYFLIV DFI Sbjct: 291 -DYLRHLANEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFI 349 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK N PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 350 NWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQ 409 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR LQ+P++ DRL KLIP + Sbjct: 410 ANRGRVIEYVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEAN 469 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P+ L+ E + + D LL ++ KLE L R+ HA G++I +S Sbjct: 470 KPLHLKDALAAEPEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCG 529 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 +Y+ + PV+ F+ +E+ GL+KFDFLGL+ LT+++ + +F+ Q VD+S IP Sbjct: 530 VYQADENASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQTTGEHVDVSHIPL 589 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD Y + T +FQ ESSGM++ L +E+IIA VSLYRPGP+D I + Sbjct: 590 DDQVAYKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIE 649 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 + K +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGKK E Sbjct: 650 -RMKGAKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPE 708 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM K +E F GA+K GIS+ A IF+ + KFA YGFNKSHAAAYA +SYQTAW+K HY Sbjct: 709 EMVKHREIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHY 768 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVG-DNRIYYSLA 840 P EF+AA+M+ E+DN +++K F DA+ I+ +PP VN F +I Y+L Sbjct: 769 PAEFMAATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIPNAQKQIRYALG 828 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AIKG G I+ A F L DFC RV + NRRVLE+L+ GA D +R Sbjct: 829 AIKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRA 888 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 LL ++D AQ +K +F + +D + L+ N + + E++ + Sbjct: 889 MLLGNIDLAI--AQAEQKADNANQGGLFDMVEDALAD-VPLQYIEPWNEATKLAEEKQAI 945 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY SGHP Y +R A G RLA S + T+ G I + Sbjct: 946 GFYLSGHPFAPYASEVRAFAPTPLGSLKA-KDGTQ-RLAGFATSIRSIMTKNGKMIAVL- 1002 Query: 1020 FSEPAKEYEANF 1031 + + E Sbjct: 1003 LEDDTAKQEVII 1014 >gi|307292876|ref|ZP_07572722.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306880942|gb|EFN12158.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 1178 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 466/1046 (44%), Positives = 634/1046 (60%), Gaps = 32/1046 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FV L+V SS+++LEGA+ I + A PA AITD N L+ ++ FS Sbjct: 1 MPHA-GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QP+IG + + D L A GY L LVS +L Sbjct: 60 EGVQPVIGAMVGVARPDRPANAPPVHDWIA------LYAQDAAGYDNLCALVSMAHLERP 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ I L+ L E T+GLI LT G G + R F + A + LF DRLY+ Sbjct: 114 VEEVPHISLAML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPDRLYI 172 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + R + E +++ LAY LPLVATN + F +EAHDV++ +A S V Sbjct: 173 EICRRLDPVEGKAEPELLDLAYARNLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETP 232 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR +PD ++K +EM +F DLPEAL NT+ +A+RC+ + I Sbjct: 233 DRRTSSPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E LR +A GLE RLA+ I + Y RL FE ++I +M F GYFLIVADF Sbjct: 288 IEGEAKMLREQAAEGLEARLAKAGIIDEEARKPYFDRLKFETDIIIQMGFPGYFLIVADF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IKWAKDQDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P Sbjct: 408 ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +++ + FR D V RL++ + KLEG RH+STHAAG+VIGDRPLSQL Sbjct: 468 TDPWTLERSLNGVAEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ LA RGV++DL+ + Sbjct: 528 VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLG 587 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ Sbjct: 588 WDDPAVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG+E+I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK Sbjct: 648 RRKNGQEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ RF+ G +++ I+ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 708 AEMDAQRARFVEGCARSDIATGKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 767 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831 YP EF AASM ++ +K+ F D R+ + + P +N DF V Sbjct: 768 YPAEFYAASMAFDIHLTDKLTVFVDDMRRMGLACLAPDINRSQADFSVEAIEQEGDDPRL 827 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + Y+L +KGVG ++ A PF SL+DF R++ + LNRR LESL AGA Sbjct: 828 GFAVRYALGGLKGVGEKAMEQLVAEREAGGPFKSLDDFADRIEPRLLNRRQLESLAAAGA 887 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 D R + + + I A + R + +F + +D + + +++ Sbjct: 888 FDGVYADRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRIPPHQTWSTAD 946 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI--RLAAMVVSKQQ 1006 R E+ GFYFS HP+D Y+ + G K Y A G +AAMV + Sbjct: 947 RMAQEKDAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRW 1006 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++T++G+R TFS+ + +++A+ F Sbjct: 1007 RETKRGARYAAATFSDSSGQFQASCF 1032 >gi|289662892|ref|ZP_06484473.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1196 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 409/1082 (37%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+ A+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVAASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTYALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + +A G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDMPTYKGVFASGSTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 +A V+ ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAIVAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|300741276|ref|ZP_07071297.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567] gi|300380461|gb|EFJ77023.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567] Length = 1180 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 366/1069 (34%), Positives = 547/1069 (51%), Gaps = 54/1069 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A Sbjct: 1 MAK-KGFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIG + + + + + + + T EG L Sbjct: 60 NDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L Q R+ LQ ++GLI TG SG I Q A F+ Sbjct: 120 SSVASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFR 177 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG D Y + H +R ++ + +LA LP VATN+ + +ED+ AH L+ Sbjct: 178 DIFGKDNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLC 237 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V + ++ R + + YL++ EM IF D+P A ENT+EIA RC+ A + Sbjct: 238 VQSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYM 297 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E + EE+ + GL R G R++ ++E+ VI M Sbjct: 298 PNFPVPEGE----NEESWFVKEVERGLHYRFPNGV------PDKVREQAEYEVGVITSMG 347 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR Sbjct: 348 FPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDR 407 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVI YV KYG ++VAQI+TFG+++AK AL+D R + PYS Sbjct: 408 VSMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467 Query: 473 DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDR--LLEISQKLEGL 521 +RL K +P D + + ++ R + E ++ LEGL Sbjct: 468 ERLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGL 527 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ + L+ ++P+ R +TQF+ E GLIK DFLGL+ LT+ Sbjct: 528 KRQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + RG+++DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ Sbjct: 588 ISDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 E I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L T G+I+YQEQ Sbjct: 648 EHISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQ 707 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F G NG S+ ++++L Sbjct: 708 VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILL 767 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 768 PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN + F I + + AI+ VG ++ A + F+S DF +V Sbjct: 828 TVLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVP 887 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929 N+R +ESL+ AGA D ++R L ++ A V++ ++F Sbjct: 888 LVVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMD 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988 + +T+ + E+ +LG Y S HPL + L + + Sbjct: 948 DALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDE 1007 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032 G + +A M+ S ++ + G++ V + + FF Sbjct: 1008 DSHIRDGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056 >gi|71900814|ref|ZP_00682933.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] gi|71729435|gb|EAO31547.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1] Length = 1193 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 407/1078 (37%), Positives = 621/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHPPWG------------MTLLCRDHAGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + F + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMATLFADIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIP+ + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+R Sbjct: 824 LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + + Sbjct: 884 VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 GT + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|313901726|ref|ZP_07835155.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM 13965] gi|313468014|gb|EFR63499.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM 13965] Length = 1162 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 328/1091 (30%), Positives = 521/1091 (47%), Gaps = 93/1091 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YS L+GA + ++++ AA PA+A+TD +N+ A+EF + A AAGI+PI Sbjct: 2 FVHLHCHSAYSFLDGASPVQALVERAAALGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61 Query: 71 IGCQLDIDMQD----------------------------------------------NLK 84 G ++ + + + Sbjct: 62 QGAEVTLLLDEPAGPAGVRPARPRPAAGAGPGGARPAGGGLGTGGKPGGGGPGGPGDAAP 121 Query: 85 MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE------ 138 P P +VLL + +GY RL L++R +L D+ + S + + L E Sbjct: 122 RPAAEGRPEPVTAHLVLLATGPQGYARLCRLLTRAHL-DRPRGSPALPWTVLLEEVAPGG 180 Query: 139 --IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-RGYDR 194 + GLI L+G GP+ +A A +R + FG + ++ LQ +R Sbjct: 181 EPLAGHGLIALSGCRQGPVLQALLRGDRATALERARQLRDAFGRENFFLELQGGWLPGNR 240 Query: 195 YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253 + LA + LVATN+ + + + + HD+L V V + R D+ Sbjct: 241 ALNRALADLAEHLGVGLVATNDVHYATRDRFAVHDLLACVRLGIPVDEPHPQRHLNADND 300 Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313 LK+ M +F+ P+ALE T+ IA RC+ L P F E LR Sbjct: 301 LKSPRAMARMFAGYPQALEATLAIAERCAPALPEGGVPRPAFPLPPGVR----AEAYLRE 356 Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373 + G G RQRL+ EL++I +++ + YFL+V D ++A++ I Sbjct: 357 QVERGALW-------RYGRITPRIRQRLEHELSIIEKLQLADYFLLVWDVARYARQQGIR 409 Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433 GRGS A S AY L ITD+D + LLFERFL+ +R PD DIDF RD+V Y Sbjct: 410 CA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSLERAEQPDIDIDFDARYRDQVADY 468 Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493 V+ +YG E VA + T+ + A+ ALRD G+ L P + +DR+ K +P + + +A+A Sbjct: 469 VEQRYGPEHVATVCTYQTYHARGALRDFGKVLGFPEAVIDRIAKRVPYYLSRQL-GRALA 527 Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553 + R+ L + RL+ + + GL RH TH G+VI RPLS L P+ R Sbjct: 528 EVPELRDLDLPRERLKRLVALCEAAAGLPRHMGTHLGGLVISRRPLSDLSPLQR-SAKGR 586 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613 + QF+ + +E+ GL+K D L L+TL +++++ + +R D IP DD TY LL Sbjct: 587 RILQFDKRGVEELGLVKLDLLSLRTLGAVEEAVRVIRRRNPSFDYDHIPLDDRATYRLLG 646 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKI 671 T T+G FQLES R ++P+ +ED++A V++ RPGPI +V + E + Sbjct: 647 TGETVGAFQLESPAQRALQPRLRPENLEDVVASVAIIRPGPIKGDMVEPFLARRRGQEPV 706 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730 +HP ++P+L++T GV+++QEQV++IA ++G++ EAD LRR M + EEM+ Sbjct: 707 TYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPGEADRLRRVMTHARSPEEMEDIGR 766 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 F+ A + G+ + +A IF ++ +A YGF ++HAAA+ V +Y+TA++ HYP E+ AA Sbjct: 767 HFLRRARQQGVGEEVAQAIFRMIQGYASYGFCEAHAAAFGVTAYKTAYLLAHYPAEWYAA 826 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 ++L+ +A + IQI+P +NT V F I L A+KG+G A Sbjct: 827 LLSLQPMGYYPPNTLGVEAARRGIQILPLDINTSQVAFTATPGTIRIGLRAVKGLGDEPA 886 Query: 851 RHIMEASA-DKPFDSLEDFCSRVDSKK-------LNRRVLESLVFAGALDCFGYSRMQLL 902 I+ PF L DF R+ ++ L+R + +L+ AGA D +R LL Sbjct: 887 AAIVAERERGGPFRHLMDFLLRLAARGGTAAGPVLDREQVAALIRAGAFDGLHANRRALL 946 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 LD A+ ++ +S + + ++ E+ VLG Sbjct: 947 WGLDEALATARQ-----AAGGGDLAQGLAAAWSPPV----VADFPDLEKWAMEREVLGID 997 Query: 963 F-SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 H L + + +L G + G +R A + V + TR G I ++T Sbjct: 998 VHRRHLLAMLREVLEARGYRPAAALRGLPPGVPVRAAGIPVRPHRPPTRSGRVIVFLTLE 1057 Query: 1022 EPAKEYEANFF 1032 + + F Sbjct: 1058 DETGLVDVTVF 1068 >gi|311113352|ref|YP_003984574.1| DNA-directed DNA polymerase III subunit alpha [Rothia dentocariosa ATCC 17931] gi|310944846|gb|ADP41140.1| DNA-directed DNA polymerase III alpha subunit [Rothia dentocariosa ATCC 17931] Length = 1180 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 366/1069 (34%), Positives = 547/1069 (51%), Gaps = 54/1069 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A Sbjct: 1 MAK-KGFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIG + + + + + + + T EG L Sbjct: 60 NDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L Q R+ LQ ++GLI TG SG I Q A F+ Sbjct: 120 SSVASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFR 177 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG D Y + H +R ++ + +LA LP VATN+ + +ED+ AH L+ Sbjct: 178 DIFGKDNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLC 237 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V + ++ R + + YL++ EM IF D+P A ENT+EIA RC+ A + Sbjct: 238 VQSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYM 297 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E + EE+ + GL R G R++ ++E+ VI M Sbjct: 298 PNFPVPEGE----NEESWFVKEVERGLHYRFPNGV------PDKVREQAEYEVGVITSMG 347 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR Sbjct: 348 FPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDR 407 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVI YV KYG ++VAQI+TFG+++AK AL+D R + PYS Sbjct: 408 VSMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467 Query: 473 DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDR--LLEISQKLEGL 521 +RL K +P D + + ++ R + E ++ LEGL Sbjct: 468 ERLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGL 527 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ + L+ ++P+ R +TQF+ E GLIK DFLGL+ LT+ Sbjct: 528 KRQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +LD + RG+++DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ Sbjct: 588 ISDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 E I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L T G+I+YQEQ Sbjct: 648 EHISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQ 707 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F G NG S+ ++++L Sbjct: 708 VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILL 767 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 768 PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++PP VN + F I + + AI+ VG ++ A + F+S DF +V Sbjct: 828 TVLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVP 887 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929 N+R +ESL+ AGA D ++R L ++ A V++ ++F Sbjct: 888 LVVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMD 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988 + +T+ + E+ +LG Y S HPL + L + + Sbjct: 948 DALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDE 1007 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032 G + +A M+ S ++ + G++ V + + FF Sbjct: 1008 DSHIRDGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056 >gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594] gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594] Length = 1163 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 452/1045 (43%), Positives = 624/1045 (59%), Gaps = 36/1045 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L+V SSYS+LEGA+ + PAIAI D N L+ A+ F+ Sbjct: 1 MAFAP-FVPLRVLSSYSMLEGAIDPKALAKLAKERGFPAIAICDRNGLYGAVAFAGACRD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPIIG + + + + + L GY L LVS+ +L Sbjct: 60 EGIQPIIGALVGVA-----------RPGSDAIDHLPLYAQDEAGYLNLCHLVSKAHLERP 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L + TEGLI LTG S G + + AE + LF +RLYV Sbjct: 109 VELVPHVSLDDF-DGRTEGLIALTGASEGGVTQLLAEGQKDHAEAYCDRLQALFPERLYV 167 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R ++ E +V LAY +LPLVATN + F ++AHD ++ +A S + ++ Sbjct: 168 ELSRRGNAVEQAAEEALVDLAYARDLPLVATNPANFAEPGFHKAHDAMLCIAGSYKIHEE 227 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DRPR ++K+ M IF DLPEA NT+ IA+RC++ I Sbjct: 228 DRPRTDQQAWVKSDRMMGEIFEDLPEATANTLVIAQRCAYAPP-----YRDPILPSLAGD 282 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + EE LR + GLE RL ++Y +RLD+E+ +I RM F GYFLIVADF Sbjct: 283 LEGEERMLRELSTKGLEKRLEPYEDLSDEDREEYFERLDYEIGIINRMGFPGYFLIVADF 342 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK + IPVGPGRGSGAGS+ A+ALTITD+DP+R LLFERFLNP+R+SMPDFDIDFC Sbjct: 343 IQWAKDHGIPVGPGRGSGAGSLVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ +YGH++VAQIITFG L+A+A LRDVGR + Y++ DRLCK++PN P Sbjct: 403 ETRRGEVIRYVQERYGHDKVAQIITFGKLKARAVLRDVGRIVDYGYNRTDRLCKMVPNHP 462 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ + F+ D L++++ +LEGL R++STHAAG+VIGDRPLSQL Sbjct: 463 TDPWTLPRALNGSAEFKAEYSNDNDTKALIDLAMQLEGLPRNSSTHAAGVVIGDRPLSQL 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK +E +GL+KFDFLGLKTL++LQK++D L +RG+ VDL + Sbjct: 523 VPLYRDPRSDMPVTQFDMKHVESSGLVKFDFLGLKTLSVLQKAVDLLEKRGIDVDLGALA 582 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y L+ + T+G+FQLES GMR+ L ++P EDIIALVSLYRPGP+DNI ++ Sbjct: 583 WDDPAVYELMKSGNTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK G E I HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK + Sbjct: 643 KRKAGLEPIEYPHPKLEEILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702 Query: 723 EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMDKQ+ F+ A + I A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 703 AEMDKQRAIFVEGCAKVSDIDADKANELFDLINKFAGYGFNKSHAAAYALLAYQTAWLKA 762 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTPCVDFKVG----D 832 HYP EF AASM +M EK+ F DAR++ I + PP +N +F V Sbjct: 763 HYPEEFYAASMCFDMHQSEKLAVFVDDARRYPLVEGGIVVAPPDINASEAEFTVERTDDG 822 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + Y+LA I+ VG I+ A+ F+SL D R+ +N R LE+L+ AGAL Sbjct: 823 YAVRYALAGIRNVGEKAMDAIVREREANGVFESLGDLFDRLPQGAMNSRQLEALIAAGAL 882 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R +L ++D + A + RT+ E +F + D + L+ + R Sbjct: 883 DGLEPNRGKLAANVDLLLATADAAIRERTSGQEALFGGDLAA-EDTLRLKDAEDWDRPTR 941 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRG--NNIRLAAMVVSKQQK 1007 E+ GFYFS HP++ ++ + G + Y + G + +AAMV Sbjct: 942 MAKERENFGFYFSEHPVEHFRDVASANGARPYASLMTGGAPAGGRSKAMMAAMVEKVNIG 1001 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 TR+G++ FS+ + ++ A F Sbjct: 1002 TTRRGAQFVRADFSDSSGQFSAACF 1026 >gi|229087161|ref|ZP_04219310.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44] gi|228696133|gb|EEL48969.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44] Length = 1109 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 361/1027 (35%), Positives = 582/1027 (56%), Gaps = 48/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HLQ + +SLL+ A ++ I+ + ++AITD N ++ + F + GIQPI Sbjct: 3 FAHLQCQTVFSLLKSACKIDEIVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSGEE-----------EGTYPLVLLAENEIGYQNLLKISSAIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GL+ ++ G G I++ ++AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLVAISPGKDGEIEQLLLQGRDELAEEVARAYQNMFG-SFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ Q A +P+VATN+ ++++ D + L++V T ++ DRPR Sbjct: 166 IQDELFLQEKLPQFASEIGIPMVATNDVRYVNQSDALVQECLLSVQGGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ +EM ++FS EAL+NTV IA RC + LP+F + + Sbjct: 226 TDQYYLKSSAEMGALFSHEEEALQNTVRIAERCHVEIPFQVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ +R+RL+ EL VI+RM FS YFLIV DF+++A Sbjct: 282 AYLRRICDEGLQK-------RYAVIETVHRERLNHELAVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +++I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 EHDILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P ++D KLIP+ + Sbjct: 395 EMIRYVKDKYGPLRVAQIVTFGTLAAKAAIRDIARVMGLPPREIDIFSKLIPSKIGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 RE + +R+ EI++++EG+ RH S HAAG+++ PL+ V + + Sbjct: 455 EAYEESVP-LREFVQGNLLHERVFEIAKRVEGMPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ + +E+ GL+K DFLGL+ LTLL+ L + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPAEVLEELGLLKMDFLGLRNLTLLENILDFIVTKTGKQIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D+ Sbjct: 633 KCQIQYLHPDLKPILENTYGVIVYQEQIMQIASRLAGFSLGEADLLRRAVSKKNREILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF Sbjct: 693 ERKHFVQGCLRNGYDETAAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ +++PPS++ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFRVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E PF L +FC R+ +K + R LE+ ++AG D F SR L S+ Sbjct: 813 ATVTAVIEERERNPFQDLFEFCLRMPAKFVTERNLEAFIWAGCFDDFQVSRTTLFNSMKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA ++ K + + + NE+ LGFY S +P Sbjct: 873 ALEYA------------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYP 920 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y +++++ I + A + + R + + +T+K ++ ++TF + E Sbjct: 921 TAQYAKLVKELEIPSIAQ--AMRQKRKVQRAIVYITGVKVIRTKKMQKMAFITFCDQNDE 978 Query: 1027 YEANFFP 1033 EA FP Sbjct: 979 MEAVVFP 985 >gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237] gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237] Length = 1479 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 346/1103 (31%), Positives = 543/1103 (49%), Gaps = 96/1103 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60 F HL H+ +S+L+ +S+ ++ A + PA+A+TD N+ A F Sbjct: 261 FSHLHNHTQFSILQSTISIPALISAAAKAKMPAVAMTDHANMMGAFHFVSGVINHNKGVV 320 Query: 61 ----------KACAAG-IQ-----------------PIIGCQLDIDMQDNLKMTNQGKTP 92 +A G ++ PIIGC+ + + K+ Sbjct: 321 SRNEENLIRFEATKNGTLKEGEEALEELPEPEIEITPIIGCEFQVCED------HTNKSQ 374 Query: 93 FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152 IV+L T +GY L ++ S + + RI +++ E +I+LTG Sbjct: 375 KDNGYQIVMLAKTKKGYLNLAKMSSIAF-VSGKYYVPRIDRKVVEQY-KEDIIVLTGNLY 432 Query: 153 GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211 G + AE+ LL +K+ FG LY+ + RH D R +Q ++Q A H++ L Sbjct: 433 GEVPSKVLNVGENQAEEALLWWKETFGADLYIEIMRHGQEDEDRANQVLIQFAKKHDVKL 492 Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIF 264 +ATNN+ ++ +E+ AHD+L+ V + ++Y K+ +M +F Sbjct: 493 LATNNTYYVDKENAHAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDQMKELF 552 Query: 265 SDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAV 316 D+PEA+ N E+ + P +F E + D ++ E LR+ Sbjct: 553 KDIPEAIINIQEVVDKVETFTLARDVLLPAFDIPEEFQFAEDKLDKGKRGENKFLRHITY 612 Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376 G + G +RLDFEL VI + + GYFLIV DFI+ A+ ++ VGP Sbjct: 613 EGAKK-------RYGEITPAIDERLDFELKVIEKTGYPGYFLIVEDFIRAARAMDVSVGP 665 Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436 GRGS AGS AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV N Sbjct: 666 GRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIN 725 Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA------------ 484 KYG +VAQIIT+G++ AK+A+RD RAL +P DR+ KLIP+ Sbjct: 726 KYGANQVAQIITYGTMAAKSAIRDTARALDLPLQDSDRMAKLIPDMSKLKKIIGVDEKIL 785 Query: 485 -HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + D L + LEG R+ HA G++I +++ V Sbjct: 786 KSKFRAEDLIKINELLAISEGDGLEAETLNQAYILEGSVRNTGIHACGVIITPDDITKFV 845 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602 P+ S++ TQF+ +E AGL+K DFLGLKTLTL++ ++ + + GV +D P Sbjct: 846 PVALAKDSEMYCTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVTLDPENFP 905 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY L T+G+FQ ES GM++ + ++P D+IA+ +LYRPGP++ I + Sbjct: 906 LDDVKTYELFQRGETVGVFQYESPGMQKHMRALKPTVFADLIAMNALYRPGPMEYIPSFI 965 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK+G E+IV + L ET G+ +YQEQVM ++Q L+ ++ EADVLR+AMGKK K Sbjct: 966 ARKHGTEEIVYDLDANEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQK 1025 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +DK K +FI AS G + I++ FA Y FNKSH+ YA I+YQTA+ K H Sbjct: 1026 YVLDKMKPKFIEQASAKGHAADKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAH 1085 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841 YP E++AA ++ M++++++ F ++ ++ + ++ P VN F V D + + + A Sbjct: 1086 YPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLDVLGPDVNESYYKFAVNDAGAVRFGMGA 1145 Query: 842 IKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSR 898 +KGVG I+E D PF S+ DF R+D + N++ ESL AG D FG R Sbjct: 1146 VKGVGRGAVETIVEHRKDEEGPFKSVFDFAKRIDLRAANKKAFESLAVAGGFDSFGDTHR 1205 Query: 899 MQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 Q + L+ KY +++ + ++F + + + + Sbjct: 1206 AQYFHAEGDGVTFLEKTIKYGAKFQESENSSQVSLFGEASDVQIPEPEVPPCEEWGTMEK 1265 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKT 1009 E+ V+G Y SGHPLD +K ++ + A ++ Q + + Sbjct: 1266 LRREKEVVGIYISGHPLDDFKSEVKSFCNASLSNLNDLESIVNREVSFAGVIADVQHRVS 1325 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 + G T + +E F Sbjct: 1326 KNGKGWAMFTMEDYTDTFEFRIF 1348 >gi|330444096|ref|YP_004377082.1| DNA polymerase III subunit alpha [Chlamydophila pecorum E58] gi|328807206|gb|AEB41379.1| DNA polymerase III alpha subunit [Chlamydophila pecorum E58] Length = 1241 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 356/1076 (33%), Positives = 573/1076 (53%), Gaps = 59/1076 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S++ L HS YS+L+ + +++ + A PAIA+TD NLF A++F + I+P Sbjct: 2 SWIPLHCHSQYSILDATCPIKDLVAQAKAYDIPAIALTDHGNLFGAIDFYKTCVQQEIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+ I + ++ ++LL +GY+ L L S ++ + Sbjct: 62 ILGCECYIAPGSRFDKKKEKRSRV--AHHLILLCKNEQGYRNLCLLSSLAFI-EGFYYVP 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 RI L++ +EGL+ L+ S + A S + EK L +++LF + + +Q H Sbjct: 119 RIDKELLKK-HSEGLVCLSACLSSSVSEAALE-SEEALEKELRWYQELFKENYFSEVQLH 176 Query: 190 RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + + + V++++ +P VATN+ +L ED++A Sbjct: 177 KMSEEKIASLPEEWLKQEYYNFIDKQTRVNTAVLEVSKRLGIPSVATNDIHYLHPEDWQA 236 Query: 228 HDVLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEI 277 H++L+ + + + + + Y K+ +M+ +F+D+PE + NT+E+ Sbjct: 237 HEILLNIQSGETIRTAKQNTYIPNPKRKTYSSREFYFKSPQQMLELFADVPEVIANTLEV 296 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQ---- 325 A+ C P ++ + + E LR GL + Sbjct: 297 AKLCDVHFDFSKKHYPIYLPETLKTKEHYTEQDRYEASALFLRQLCEKGLSKYTPEVLAH 356 Query: 326 --GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 + +QR++ E+++I Y LIV D I WAK +NIPVGPGRGSGAG Sbjct: 357 IAKKFPNQDPLELVKQRMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHNIPVGPGRGSGAG 416 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 SV + L IT+I+P+RF L FERF+NP+R+S PD DID C + R+EVI Y K+G + V Sbjct: 417 SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMEGREEVINYAIEKHGKDNV 476 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503 AQIITFG+++AK A++DVGR L MP S+V+ + K IP A +++ D + + Sbjct: 477 AQIITFGTMKAKMAIKDVGRTLDMPLSKVNTIAKHIPELNA--TLAKSLETDPDLHQLYI 534 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 D ++++++ +LEG R+ HAAG++I PL+ +P+ S + TQF+MK Sbjct: 535 DDVEAAQVIDMAMRLEGSIRNTGVHAAGVIICGEPLTNHIPVCISKDSSMITTQFSMKPA 594 Query: 564 EKAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E G++K D LGLKTLT + + ++ + +P DD T+ LL T+G+FQ Sbjct: 595 ESVGMLKVDLLGLKTLTSIHLAMSAIYQKTQKRLHMETLPLDDKMTFSLLHQGKTMGVFQ 654 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 +ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +L Sbjct: 655 MESKGMQELAKNLRPDSFEEIIAICALYRPGPMDMIPSFINRKHGKENIDYDHPLMESIL 714 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 KET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M +++ +F A+ NGI Sbjct: 715 KETYGIMVYQEQVMQIAGALANYSLGEGDVLRRAMGKKDHQQMVQERSKFCERAANNGID 774 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+VEK+ Sbjct: 775 PDIATIIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPQEWLAALLTCDSDDVEKV 834 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861 K ++A+ NI I+PP +N F + I ++L AIKGVG + H+++ P Sbjct: 835 GKLIREAQSMNIPILPPHINISSNHFVATNEGIRFALGAIKGVGKSFIEHLVKERELHGP 894 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 + S++DF R + K++++ +ESLV AG DCF +R L SLD + +K Sbjct: 895 YRSIQDFIQRSNFTKISKKNMESLVDAGCFDCFEPNRDLALASLDALYNTVSKEKKEAAT 954 Query: 922 KHENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 F+ + + + + + E+ +LG Y + HP+D ++ ++ Sbjct: 955 GVMTFFSLDSMHEQNPLPVAAPKDVVFRTKKELLKKEKELLGIYLTEHPMDAFRETFPRL 1014 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033 + + E G IR ++ K + KG + + S+ YE +P Sbjct: 1015 SVVPFGEFENLSHGAVIRTVFIIDKITTKFSSKGQKKFAILRVSDGMDSYELPVWP 1070 >gi|300933332|ref|ZP_07148588.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM 45100] Length = 1189 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 305/1073 (28%), Positives = 511/1073 (47%), Gaps = 52/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+G ++ + + PA+ +TD N+F A F + A Sbjct: 1 MSGS-SFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTA 59 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 A I+PIIG + I + + + + ++ A G + L Sbjct: 60 ADIKPIIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFY 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 120 LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H +R ++++ +LP + TN+ ++ E AH+V++ Sbjct: 179 QDIYGKDNFFLELMDHGLEIERRVREDLLEIGRRLDLPPLVTNDCHYVLESQAAAHEVML 238 Query: 233 AVAHSTVVSQK--------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 V + + + T + ++P+ +NT+ +A R Sbjct: 239 CVQTGSTLDEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDY 298 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 +V + + L ++ + GLE R + +Y R +E Sbjct: 299 SEVWEEHPFDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPV-----PTEYIDRAKYE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 + VI + YFLIVA+ I++A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLF Sbjct: 354 IEVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D RA Sbjct: 414 ERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARA 473 Query: 465 LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 + K IP + + + R DP V+++ + Sbjct: 474 HYGQAGFQMADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDVNKIYQ 533 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 ++ LEG+ R A HA +++ PL +PM++ + +T + E GL+K DF Sbjct: 534 DARGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +L+ + R +DL + +D TY LL TLG+FQL+S GM++ L Sbjct: 594 LGLRNLTVIGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGGMQELL 653 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPM----LKETQ 686 + M+P DI+A ++LYRPGP+ + +RKNG++ IV IHP ++ L+ET Sbjct: 654 KRMKPTGFNDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEILEETY 713 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F SG NG S Sbjct: 714 GLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGFSDAAI 773 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + Sbjct: 774 KTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYL 833 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 D R I+++ P VN F+ I + L A++ VG I+ + + F Sbjct: 834 ADCRHLGIRVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKGAFKDF 893 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ +++ ++RV ESL+ AGA D G+ R L+ ++ +K + Sbjct: 894 SDYLDKIEIAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAAKGQFD 953 Query: 926 IFAHEKGTFS-DKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 +FA + + + E+ +LG Y SGHPLD ++ L Sbjct: 954 LFAGFGDDEAVGDVFRVDVPDQNWDRKHELAMERDMLGLYVSGHPLDGFEDALDAQVDTP 1013 Query: 983 YEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032 + +++ ++ S +++ R G+ T + + E F Sbjct: 1014 LTTVLSGELPNNREVKIGGIISSVERRVDRNGNPWVICTLEDQHGAQVELLVF 1066 >gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM 44291] Length = 1186 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 312/1070 (29%), Positives = 515/1070 (48%), Gaps = 49/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N+F + F ++ Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVE 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + +L A G + L + Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLRNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L + Q + R+ + E +G+I TG SG + A + + Sbjct: 121 LSTLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDAALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + +R ++++ ELP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + +DR + Y + + D +NT+ IA R ++ Sbjct: 240 CVQTGKTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + LR + + GLE R Q+Y R ++E++VI Sbjct: 300 HPHDRMPVADVPEGETPTTWLRKEVMRGLEERFPG-----SEVPQEYIDRANYEVDVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A++ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I Y ++G +++AQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVWFGQPG 474 Query: 471 QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 L P A + + + + R DP V ++ E ++ LE Sbjct: 475 FQMADRINSALPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYETARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ PL + +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ RGV +DL + D+ Y LL+ TLG+FQL+S GM+ L+ M+P Sbjct: 595 TVIGDAMANIEKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLKRMKPT 654 Query: 639 CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692 DI+A ++LYRPGP+ Y +RKNG++ I IHP ++ L ET G+I+YQ Sbjct: 655 GFNDIVASLALYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYGLIVYQ 714 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M+I+Q ++ Y+ EAD R+AMGKK E + ++ +F G NG SK ++ Sbjct: 715 EQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVDALWGT 774 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA YA++SY TA++K +Y E++AA +T D +K + D R Sbjct: 775 IEPFASYAFNKSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLADCRHL 834 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871 I ++ P +N +F + I Y LAA++ VG I E F S D+ + Sbjct: 835 GISVLQPDINESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFSDYLDK 894 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 ++ N+R+ ESL+ AGA D G+ R L+ ++ +K ++FA Sbjct: 895 IELLACNKRITESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDLFASFA 954 Query: 932 GTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986 G + I + + E+ +LG Y SGHPLD Y+ + + Sbjct: 955 GEDGAEQAVFTIDVPD-DEWDRKHTLALEREMLGLYVSGHPLDGYEEAIDAQTNTALTDI 1013 Query: 987 V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G + + ++ S ++ ++K GS VT + + E F Sbjct: 1014 LSGEMRDGAEVTIGGLISSVDRRFSKKDGSPWAIVTIEDHHGAQVEVLMF 1063 >gi|289670237|ref|ZP_06491312.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1195 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 411/1081 (38%), Positives = 603/1081 (55%), Gaps = 77/1081 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFGEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + Y+K+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + +A G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K +IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQSIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGSTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGLGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLILQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN-------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 LA V+ ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECSA 1059 Query: 1032 F 1032 F Sbjct: 1060 F 1060 >gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823] gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823] Length = 1463 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 342/1079 (31%), Positives = 546/1079 (50%), Gaps = 80/1079 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61 FVHL H+ +++L+ +++ ++ + PA+A+TD N+ +A F + Sbjct: 258 FVHLHNHTQFTILQSTMNVKGLVKQAVKHNMPAVALTDIGNMMAAFHFEKAIAGINSEIE 317 Query: 62 -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 A G + PIIGC++ + K+ +V + +GY Sbjct: 318 AERKEAEENGQTISKKPLLPIIGCEMYVC------RDRLDKSVKDNGSLVVFIAKNKKGY 371 Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 LI+L S + + RI S +++ E LI+LTGG +G I + AE+ Sbjct: 372 HNLIKLASISHT-EGMYYVPRIDKSAVEQYH-EDLIVLTGGLNGEIPSLLLNVGEKQAEE 429 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 L+ +K LFG+ LYV + RH D R + +++LA HE+ LVATNN+ + S ED H Sbjct: 430 ALVWWKNLFGEDLYVEIMRHGQEDENRVNASLIKLAQKHEVKLVATNNTFYGSREDANTH 489 Query: 229 DVLMAVAHS---TVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 D+L+ V T K R ++Y K+ EM +F DLPEA+E+ EI + Sbjct: 490 DILLCVRDGEQVTTPKGKGRNFRFGLENEEYYFKSADEMKELFLDLPEAIESISEILGKI 549 Query: 282 SFILQ--------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333 P + + D ++ E LR+ G R + Sbjct: 550 EHYPLAREVLLPAFDIPDEFKDPQDAIDGGKRGENAFLRHLTYEGAAKRYPE-------I 602 Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 + R RLDFEL + + + GYFLIV DF Q A+ + VGPGRGS AGS AY IT Sbjct: 603 TDEIRDRLDFELATVEKTGYPGYFLIVQDFCQAARDMGVAVGPGRGSAAGSAVAYCTGIT 662 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 ++DP+ + LLFERFLNPDR+SMPD DIDF + R VI +V KYG +VAQIIT+G++ Sbjct: 663 NVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVIEKYGSNQVAQIITYGTMA 722 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA---------------IADDSRF 498 AK+++RD GR L +P + L KLIP++ +A+ Sbjct: 723 AKSSIRDAGRVLDLPLMDTNLLAKLIPDNFTLDAIFNWEEPKLAEKLANSPQDLANVQEL 782 Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558 R ++L +Q++EG R+ HA G++I ++ VP+ + + TQF Sbjct: 783 RAVSKGTDMRAQVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVSLAKDTGMWCTQF 842 Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617 + E+AGL+K DFLGLKTLTL++ ++ + +R D P DD +TY L T Sbjct: 843 DNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHDIDLDPDTFPIDDEKTYELFQRGET 902 Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677 +GIFQ ES GM++ + ++P D+IA+ +LYRPGP++ I + RKNG+++I Sbjct: 903 VGIFQYESPGMQKYMRELRPSVFADLIAMNALYRPGPLEYIPDFIKRKNGEQEIKYDLDA 962 Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737 + LKET G+ +YQEQVM ++Q L+G+S +ADVLR+AMGKK + +DK K +F+ Sbjct: 963 CEEFLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKMKPQFVEQGQ 1022 Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797 + G + I++ FA Y FNKSH+ YA I+YQTA++K +YP EF+A+ ++ ++ Sbjct: 1023 ERGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMASVLSNNLN 1082 Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856 ++ ++ F ++ R+ I+++ P VN +F V I + L IKG+G+ +I+E Sbjct: 1083 DIAQVSFFMEECRRMGIEVLGPDVNESAYEFTVNQHGAIRFGLGGIKGLGSGPVENIIEN 1142 Query: 857 S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDN 907 + F S+ + R++ + +N++ +ES+ +AG D F G R Q ++N Sbjct: 1143 RQEEGSFQSIFEMTKRLNLRIVNKKAMESMAYAGCFDSFKGAHRAQYFALDAGGKTFIEN 1202 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 KY ++ N + ++F + T+ N + E+ V+G + SGHP Sbjct: 1203 ALKYGNSLQDNENSAQVSMFGESADVKMPEPTIPNSEEWNLLYKLNREKEVVGIFISGHP 1262 Query: 968 LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 LD ++ + E G + + A++ Q T+ G G + + + Sbjct: 1263 LDDFRVEIEAFCNGNVELLSNVKNHLGRDFTIPAIITDAQHLTTKTGKPFGLILIEDYS 1321 >gi|283458361|ref|YP_003362984.1| DNA polymerase III subunit alpha [Rothia mucilaginosa DY-18] gi|283134399|dbj|BAI65164.1| DNA polymerase III, alpha subunit [Rothia mucilaginosa DY-18] Length = 1180 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 363/1069 (33%), Positives = 553/1069 (51%), Gaps = 54/1069 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A Sbjct: 1 MA-TKEFTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIG + + + + + + + T EG L Sbjct: 60 HDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L Q R+ LQ ++GLI TG SG + A + F+ Sbjct: 120 SSIASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFR 177 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG D Y + H +R + + +LA LP VATN+ + +ED+ AH L+ Sbjct: 178 DIFGKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLC 237 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V + ++ R + + YL++ EM ++F D+P A ENT+EIA RC+ A + Sbjct: 238 VQSGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYM 297 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E + EE+ + GL R G R++ ++E+ VI M Sbjct: 298 PNFPVPEGE----NEESWFVKEVEKGLHYRFPDGV------PDKVRKQAEYEVGVITSMG 347 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR Sbjct: 348 FPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDR 407 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVI YV KYG E+VAQI+TFG+++AK AL+D R + PYS Sbjct: 408 VSMPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467 Query: 473 DRLCKLIPND-PAHPVSLQAIADDSRFREA----------RLADPSVDRLLEISQKLEGL 521 +RL K +P D ++L + ++ R A D ++ E ++ LEGL Sbjct: 468 ERLTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGL 527 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ + L ++P+ R +TQF+ E GLIK DFLGL+ LT+ Sbjct: 528 KRQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +++ + RG+ +DL +P DD E+Y LL TLG+FQL+ MR L+ M+P+ Sbjct: 588 ISDAVENIKANRGIDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 E I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L T G+I+YQEQ Sbjct: 648 EHISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQ 707 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ F G NG S+ ++++L Sbjct: 708 VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILL 767 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 768 PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++ P VN + F + I + + AI+ VG ++ A + ++S DF +V Sbjct: 828 TVLAPDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929 + N+R +ESL+ AGA D G++R L + A V++ ++F Sbjct: 888 LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988 + +T+ + + E+ +LG Y S HPL + L + + Sbjct: 948 DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032 G + +A M+ ++ + G++ V +P+ FF Sbjct: 1008 DSHVRDGETVTIAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056 >gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits [Flavobacterium psychrophilum JIP02/86] Length = 1508 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 348/1100 (31%), Positives = 554/1100 (50%), Gaps = 86/1100 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 +TQ L + F HL H+ +S+L+ +S+ ++ A ++ A+A+TD NL A F + Sbjct: 252 ITQNLANAK-FAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHANLMGAFHFVR 310 Query: 61 --------KACAA-------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99 A ++PI+GC+ + ++ K+ + Sbjct: 311 DVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFVCDN------HKDKSKKDNGYQV 364 Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159 V L +GY L ++ S Y + RI + +++ E +I+L+G G I Sbjct: 365 VFLAKNKKGYHNLAKMSSIAYT-EGFYYVPRIDRNVIEQY-KEDIIVLSGNLYGEIPSKI 422 Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSL 218 AE+ LL +K F D Y+ L RH D R ++ A HE+ L+ATNN+ Sbjct: 423 LNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNNTF 482 Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEAL 271 ++S++D AHD+L+ V + ++Y K+ EM +FSDLP+A+ Sbjct: 483 YISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPDAI 542 Query: 272 ENTVEIARRCSFILQVHAPILPRFIEK--------ECDDIQKEEENELRNKAVAGLEVRL 323 N EI + +LP+F + D + E L + G + R Sbjct: 543 VNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKRRY 602 Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 A+ + +R+DFEL I + GYFLIV DFI A+K ++ VGPGRGS AG Sbjct: 603 AE-------ITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAG 655 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 SV AY L IT+IDPL ++LLFERFLNPDR+S+PD DIDF + R +V+ YV KYG ++V Sbjct: 656 SVVAYCLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQV 715 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503 AQIIT+G++ AK+A+RD R L +P + D++ KL+P +L +D+ ++ Sbjct: 716 AQIITYGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKKV 775 Query: 504 ADPSVDRLL-----------------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 P + + +Q LEG R+ HA G++I ++ VP+ Sbjct: 776 LRPEDFDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPVT 835 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 SDL VTQF+ E AGL+K DFLGLKTLTL++ ++ + R D P DD Sbjct: 836 TAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPIDD 895 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 +TY L T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGPI I + RK Sbjct: 896 VKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKRK 955 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I + +LK+T G+ +YQEQVM ++Q L+ +S +ADVLR+AMGKK ++ + Sbjct: 956 NGEEPIEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDVL 1015 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 DK K +F+S A G ++ I++ FA+Y FNKSH+ YA I+YQTA++K +YP Sbjct: 1016 DKMKPKFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYPA 1075 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844 E++AA ++ M +++++ F ++ ++ + ++ P VN F V D+ + + + A+KG Sbjct: 1076 EYMAAVLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVKG 1135 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQ 903 VG I+E D + S+ D RVD + N++ +E+L+ AG DCF R Q Sbjct: 1136 VGMGAVNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYFH 1195 Query: 904 S-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 + + ++ ++N + ++F + + N+ + E+ Sbjct: 1196 TDGDNLTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKEK 1255 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSR 1014 V+G Y SGHPLD YK ++ E + G N+ +V + Q + + G Sbjct: 1256 EVVGIYISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGKG 1315 Query: 1015 IGWVTFS--EPAKEYEANFF 1032 + E F Sbjct: 1316 WATFVLEGYDENN--EFRIF 1333 >gi|28198096|ref|NP_778410.1| DNA polymerase III subunit alpha [Xylella fastidiosa Temecula1] gi|182680724|ref|YP_001828884.1| DNA polymerase III subunit alpha [Xylella fastidiosa M23] gi|32129492|sp|Q87EY0|DPO3A_XYLFT RecName: Full=DNA polymerase III subunit alpha gi|28056156|gb|AAO28059.1| DNA polymerase III alpha chain [Xylella fastidiosa Temecula1] gi|182630834|gb|ACB91610.1| DNA polymerase III, alpha subunit [Xylella fastidiosa M23] gi|307579189|gb|ADN63158.1| DNA polymerase III subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 1193 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 406/1078 (37%), Positives = 619/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHPPWG------------MTLLCRDHAGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLLAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FGD L++ L R + +Q+A +P++A+N+ FL + D+ AH+ Sbjct: 168 ADWQHVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIP+ + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL DFC+R Sbjct: 824 LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + ++F + + Sbjct: 884 VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 GT ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILGSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|262277280|ref|ZP_06055073.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114] gi|262224383|gb|EEY74842.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114] Length = 1139 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 436/1032 (42%), Positives = 653/1032 (63%), Gaps = 29/1032 (2%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L++HS +S+ EGA+ ++ +++ A+ + D+ NL ALEFS + GIQP+IG Sbjct: 8 LKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGIQPLIGT 67 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRIC 132 ++ I + K+T + L GY+ L++L S+ YL Q I Sbjct: 68 KIYIKENVDGKITYGTAS---------LYAKNQIGYKNLLKLSSKSYLDLQEHDDKPNIN 118 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 L+ L++ EG+I+L GGS N + + K +F D +Y+ +QRH Sbjct: 119 LNILKKYH-EGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHNES 177 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 +++ E ++++L+ +PL+ATN +L ++ Y AHD + V V++K+R + + Sbjct: 178 HEKQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLKYSNQ 237 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 HY K SE ++F+DLP+ALEN + ++ + + + K+ L Sbjct: 238 HYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKK-----SNPLLPSFSENGKDTNQIL 292 Query: 312 RNKAVAGLEVRLAQGAIAK-------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++KA GLE RL + + ++Y RL++E+NVI++MKFSGYFLIV+D+I Sbjct: 293 KDKAEKGLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFLIVSDYI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP+RF L+FERFLNPDR+SMPDFDIDFCQ Sbjct: 353 NWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDFCQ 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 + RDEVI YV++KY + +VAQIITFG LQA+ ALRD+GR L +PY +VD+LCK+IP DP+ Sbjct: 413 EGRDEVINYVKDKYPN-KVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFDPS 471 Query: 485 HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 P+S ++IA + R +EA DP + +L+ + KLEGLYR+ +THAAG+VIGDR L ++V Sbjct: 472 RPLSLAESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDEIV 531 Query: 544 PMYRD--VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 P+Y+D +PVTQF+MK E+AGL+KFDFLGLKTLT+++K+++F+ + D+S I Sbjct: 532 PLYKDLSSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKADFDISKI 591 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 D +T+ LL++ T+GIFQLESSGMR+ L+ ++P+ EDIIALV+LYRPGP+ NI Y Sbjct: 592 NLSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQNIPTY 651 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 +RK+ KE++ IHP ++ +LKET GVIIYQEQVMQIAQ LS +S S+AD+LR+AMGKK Sbjct: 652 ISRKHEKEEVDYIHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRKAMGKKK 711 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EM++QK+ FI GA KNGIS+ + IF+L+ KFA YGFNKSHAAAYA+I++QTA++KT Sbjct: 712 SVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQTAYLKT 771 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP+ F ASM E+ N +K+ F ++ ++ I I PP++N +F D IYY+L+A Sbjct: 772 HYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEFLPRDKTIYYALSA 831 Query: 842 IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG T I+ E + F+S+ +F SRV+SK LN+ LE L+ +G+LD +R + Sbjct: 832 VKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDILDNNRKK 891 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L +++ K ++ +K N+ + +F++E I + + + + E +G Sbjct: 892 LFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEFNILDWDKNEKIKKEFESIG 951 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 F+ HPL +L+K + ++E + +A ++S Q+KKT KG+ + Sbjct: 952 FFVGEHPLKSNLQVLKKYNVSSHQELKNNNALKDAMIAGTLISIQEKKTAKGNPYAIIKL 1011 Query: 1021 SEPAKEYEANFF 1032 + YE F Sbjct: 1012 VDLGSMYELFIF 1023 >gi|227833468|ref|YP_002835175.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC 700975] gi|227454484|gb|ACP33237.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC 700975] Length = 1190 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 300/1074 (27%), Positives = 512/1074 (47%), Gaps = 53/1074 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F Q+ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + +L G + L + Sbjct: 61 AGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E +H+ ++ Sbjct: 180 QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAP 290 V DR + Y + + D EA +NT+ IA R + Sbjct: 240 CVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ + GL+ G Q+Y R ++E++VI Sbjct: 300 HTHDRMPIADVPEGYTPTSWLTHEVMEGLK-----DRFNGGDVPQEYIDRAEYEISVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + ++ + R+ DP V ++ E ++ LE Sbjct: 475 FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ L+ + + DL + + Y LL+ TLG+FQL+S GM++ L+ M Sbjct: 595 TVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 655 KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G NG SK + Sbjct: 715 VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAMDAL 774 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + D Sbjct: 775 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLADC 834 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868 R I+++ P VN F+ I + + AI+ VG I++ F S D+ Sbjct: 835 RHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSFSDY 894 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +++ ++RV ESL+ AGA D + R L+ ++ Q +K ++FA Sbjct: 895 LDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFDLFA 954 Query: 929 HEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 G I + + + E+ +LG Y SGHPLD ++ L Sbjct: 955 GFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQTDTP 1013 Query: 983 YEESVATI--RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS V+ + + + F Sbjct: 1014 ITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1067 >gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus HTCC2559] Length = 1454 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 329/1074 (30%), Positives = 539/1074 (50%), Gaps = 70/1074 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61 +F HL HS +S+L+ +S+ +++D A+ P +A+TD N+ A F + Sbjct: 261 TFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDHANMMGAFHFVRAVNTYNKSL 320 Query: 62 -----ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 ++ I+GC+ + N K+ IV+L T +GY L ++ Sbjct: 321 AGSEDLDKKPLKAIVGCEFQVCEDHN------DKSRQDNGYQIVMLAKTKKGYHNLAKMA 374 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S Y + RI + +++ E +I+LTG G + + AE+ LL +K Sbjct: 375 SIAYT-EGFYYVPRIDRAVVEKY-KEDVIVLTGNLYGEVPSKVLNVGEKQAEESLLWWKS 432 Query: 177 LFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 F + LY+ + RH D R +++LA H++ +VA+NN+ + ++ D AHD+L+ V Sbjct: 433 HFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKGDANAHDILLCVK 492 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL--- 292 S+ + L N+ ++ ++ E ++ Sbjct: 493 DGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQDVVNKIEGFDLAR 552 Query: 293 ------------PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 + + D ++ E L++ G + G + ++R Sbjct: 553 DVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKE-------RYGEITPEIKER 605 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 LDFEL++I + + GYFLIV DFI+ A+ ++ VGPGRGS AGS AY L IT+IDP+++ Sbjct: 606 LDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNIDPIKY 665 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNPDR+SMPD DIDF + R V+ YV KYG ++VAQIIT+G++ AK+A+RD Sbjct: 666 DLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAKSAIRD 725 Query: 461 VGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPS 507 GR L +P + D++ KLIP+ + + + + Sbjct: 726 TGRVLDLPLHETDKIAKLIPDMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSISGGNDL 785 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 + + ++ LEG R+ HA G++I +S VP+ R +L +TQF+ +E AG Sbjct: 786 QAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSVVEDAG 845 Query: 568 LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 L+K DFLGLKTLTL++ ++ + + GV++D P DD +TY L T+GIFQ ES Sbjct: 846 LLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIFQYESP 905 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM++ ++ ++P +D+IA+ +LYRPGP++ I + RK+G E I P ++ LKET Sbjct: 906 GMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEYLKETY 965 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM ++Q L+ ++ EAD+LR+AMGKK K +DK K +FI AS G Sbjct: 966 GITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGHDAEKL 1025 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M N++++ F Sbjct: 1026 EKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQVTFFM 1085 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864 ++ R+ + ++ P VN F V + I + +AAIKGVG++ I+ + F S Sbjct: 1086 EECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKENGHFKS 1145 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVE 916 + D R+D + N++ E+L AG D F R Q L+ + +YA + Sbjct: 1146 IFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRYAAKYQ 1205 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +N+ + ++F + + + + E+ V+G Y SGHPLD Y ++ Sbjct: 1206 ENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDYNIEMK 1265 Query: 977 KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + LA ++ + T+ T + YE Sbjct: 1266 SFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTKTNKGWAIFTAEDYHNTYE 1319 >gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans ATCC 33394] gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans ATCC 33394] Length = 1153 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 388/1040 (37%), Positives = 576/1040 (55%), Gaps = 37/1040 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P ++ L+ HS +S+ +G + + + A PA+A+TD N F L+F + Sbjct: 10 MNAIP-YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKACRK 68 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+G ++ I +LL+ GY RL EL++ + + Sbjct: 69 AGVKPILGAEVRIANP----------KQPAQPFRALLLIRNHSGYVRLGELLTLAHTDEY 118 Query: 125 GKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + ++ WL E GLI L+G G I +A + A + + F Y Sbjct: 119 RDLIAPQLQEEWLAEGDNSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQAFY 178 Query: 184 VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + +QR + + V+LA +LP+VAT+ + FL ED+ AHD + +A V++ Sbjct: 179 LEVQRLPDKPEWETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWVLA 238 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 RP + Y + EM F+DLP AL N++EIA+RC+ L++ LP F E Sbjct: 239 DDKRPHDFSDSQYFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTPEG 298 Query: 301 DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + + L A GL R+ + +Y+ RLDFEL I +M F GYF Sbjct: 299 MPLN----DYLCVLANQGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPGYF 354 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK+N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 355 LIVQDFINWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPD 414 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQ R VI YV+ KYG E V+QI+TFG+L +KA +RDVGR LQ+P+ DRL K Sbjct: 415 FDIDFCQANRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSK 474 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 L+P + P+ A+ + R A+ + + L KLE L R+ HA G++I Sbjct: 475 LVPVEANKPLGLQAALEAEPEIRTLIEAEEAEELLTLA-LKLEDLTRNLGMHAGGVLIAP 533 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595 ++ +Y+ PV+ ++ +E+ GL+KFDFLGL+ LT+++ + F+ Q RG Sbjct: 534 GRIADFCGVYQADEHSSPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQTRGED 593 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ I DD Y + T +FQ ESSGM+Q L+ E++IA VSLYRPGP+ Sbjct: 594 IDVNRIALDDQAAYQIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPM 653 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +NI + + K +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 654 ENIPDFVA-RMKGAKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRR 712 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K I + A IF+ + KFA YGFNKSHAAAYA +SYQ Sbjct: 713 AMGKKKPEEMVKHREIFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQ 772 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVG-D 832 TAW+K HYP EF+AA+M+ E+DN +++K F DA++ I+ +PP +N F + Sbjct: 773 TAWLKAHYPAEFMAATMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIPNAN 832 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 N I Y+L AIKG G I+ A+ F L DFC R+ K +NRR +E+L+ GA Sbjct: 833 NEIRYALGAIKGTGEAVVNQIVAEREANGAFTGLLDFCERMG-KHINRRSVEALIRGGAF 891 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R LL ++D + A+ +K+++ +F D I ++ + +V+ Sbjct: 892 DALEPNRAMLLANVDLALQNAE--QKHQSANQGGLFDMFDDV-IDDIQMQPAPAWSEAVQ 948 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E+ +GFY SGHP Y+ +R++ + G R+A S + T++ Sbjct: 949 LAEEKTAIGFYLSGHPFSPYREEVRRVAPVSLAKLSEQ-DGTQ-RVAGFATSIRSIMTKR 1006 Query: 1012 GSRIGWVTFSEPAKEYEANF 1031 G + + + + E Sbjct: 1007 GKMLAIM-LEDDEAKQEVLV 1025 >gi|262184456|ref|ZP_06043877.1| DNA polymerase III subunit alpha [Corynebacterium aurimucosum ATCC 700975] Length = 1193 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 300/1077 (27%), Positives = 512/1077 (47%), Gaps = 53/1077 (4%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F Q+ Sbjct: 1 MSRMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQR 60 Query: 62 ACAAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 +AG++PIIG + + + + +L G + Sbjct: 61 MTSAGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRN 120 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L +L S Q + R+ + E EG+I TG SG + A + Sbjct: 121 LFKLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAA 179 Query: 172 LTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 ++ ++G D ++ L H ++ ++++ +LP + TN+ ++ E +H+ Sbjct: 180 AMWQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHE 239 Query: 230 VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQV 287 ++ V DR + Y + + D EA +NT+ IA R + Sbjct: 240 AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAI 299 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + + L ++ + GL+ G Q+Y R ++E++V Sbjct: 300 WEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLK-----DRFNGGDVPQEYIDRAEYEISV 354 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERF Sbjct: 355 IDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERF 414 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 LNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFG 474 Query: 468 PYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516 + K IP + ++ + R+ DP V ++ E ++ Sbjct: 475 QPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETAR 534 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 LEG+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL Sbjct: 535 GLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGL 594 Query: 577 KTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 + LT++ L+ + + DL + + Y LL+ TLG+FQL+S GM++ L Sbjct: 595 RNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELL 654 Query: 633 EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQ 686 + M+P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET Sbjct: 655 KRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETY 714 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G NG SK Sbjct: 715 GLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAM 774 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + Sbjct: 775 DALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYL 834 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSL 865 D R I+++ P VN F+ I + + AI+ VG I++ F S Sbjct: 835 ADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSF 894 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ +++ ++RV ESL+ AGA D + R L+ ++ Q +K + Sbjct: 895 SDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFD 954 Query: 926 IFAHEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 +FA G I + + + E+ +LG Y SGHPLD ++ L Sbjct: 955 LFAGFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQT 1013 Query: 980 IKGYEESVATI--RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS V+ + + + F Sbjct: 1014 DTPITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1070 >gi|295706863|ref|YP_003599938.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294804522|gb|ADF41588.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1116 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 366/1009 (36%), Positives = 583/1009 (57%), Gaps = 37/1009 (3%) Query: 27 LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86 + ++ +++ AIA+TD N ++ + F + AGI+PIIG L I + + Sbjct: 19 VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPIIGLTLSILEHEESER- 77 Query: 87 NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146 +VLL +GY+ L++L S + ++ + WL + GLI Sbjct: 78 ---------AYPLVLLAENDKGYENLLKLSSLVQTKEKHG----VNKKWLHHY-SGGLIA 123 Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206 +T G +G ++ N Q A++ L FKK++ LY+++QRH + + Q+ +LA Sbjct: 124 ITPGVTGEVETLLAENKFQDAKRVLQFFKKVYSQSLYISIQRHGQDETFINQQLTELAAE 183 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFS 265 +PLVATN +L +ED +A++ L+A+ + S ++ + ++Y K+ EM +F Sbjct: 184 ENIPLVATNQVKYLKKEDRDAYECLVAIRDGEKLHSDEEVKSKSSEYYFKSPDEMEDLFH 243 Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 D +E +++IARRC + + +P++ LR GL+ R+ Sbjct: 244 DQHFLIEESIKIARRCELEISLGVMSIPKYPVP----PSVTSSTYLRTLCEKGLQERVQ- 298 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 + Y +RLD+ELN+I M+FS YFLIV DF+ +A ++ I GPGRGS AGS+ Sbjct: 299 ------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAGSL 352 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 +YAL IT++DP++ LLFERFLNP+R+SMPD DIDF ++RD+VI+YV KYG VAQ Sbjct: 353 VSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVAQKYGGLHVAQ 412 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505 IITFG+L AKAA+RDVGR + ++++ K IP P + + D ++ + Sbjct: 413 IITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLKSA-LRDSRVLQDYLSEN 471 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 + + I+ K+EGL RH STHAAG+VI ++PL+Q V + + D+ +TQ+ M+ ++ Sbjct: 472 EARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEALQD 530 Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLE 624 GL+K DFLGL+ LT+L L + + + LS IPF+D +T+ LL+ T GIFQLE Sbjct: 531 VGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQLE 590 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S GMR+ L+ ++P +EDI+A+ +LYRPGP++NI Y RK+G EK++ HP + +L+ Sbjct: 591 SDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDILQS 650 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + +D+++ FI G+ K G + Sbjct: 651 THGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYDLS 710 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T + N KI + Sbjct: 711 VANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKIAQ 770 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864 + + ++ IQ++PPS+N F V I YSLAAIK +G + I E K F+ Sbjct: 771 YINELKRNKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRFED 830 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 L DFC+RV K +N++ LE+L+ +G D FG +R LL ++D ++A V + Sbjct: 831 LFDFCARVSQKAVNKKGLEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG-- 888 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 F E FS K + R + E+ +LGFY S HP Y+ + + Sbjct: 889 --FGDE---FSLKPKYMEKEELKIEDRLQYEKDMLGFYLSSHPASQYEALNSFYSVVSLH 943 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + L V+ + +T+KG ++ ++ ++ + E E FP Sbjct: 944 DMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 992 >gi|305681335|ref|ZP_07404142.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC 14266] gi|305659540|gb|EFM49040.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC 14266] Length = 1203 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 323/1073 (30%), Positives = 517/1073 (48%), Gaps = 47/1073 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + K SFVHL H+ YS+L+G ++ + ++ A+ +TD N+F + F + Sbjct: 14 MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110 AGI+PIIG + + M Q + ++ TAEG Sbjct: 74 AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L L S Q + R+ + E G+I TG SG I A + Sbjct: 134 NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192 Query: 171 LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 ++ ++G D ++ L H + S+++++ +LP + TN+ ++ E AH Sbjct: 193 AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAHAH 252 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQ 286 +V++ V +S DR + Y +E + D P+A +NT+ IA R Sbjct: 253 EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + + LR++ + GL +Y +R ++E+ Sbjct: 313 IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLR-----DRFDGAEVPANYIERAEYEIG 367 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLFER Sbjct: 368 VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--A 464 FLNP+R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K A++D R Sbjct: 428 FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487 Query: 465 LQMPYSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515 Q Y DR+ K L P A +S + R+ DP V ++ + + Sbjct: 488 GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEG+ R A HA +++ PL +PM++ +T + E GL+K DFLG Sbjct: 548 RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607 Query: 576 LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ +L+ + R +DL + D Y LL TLG+FQL+S GM++ L+ Sbjct: 608 LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLKR 667 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688 MQP DI+A ++LYRPGP+ + + Y +RKNG++ I IHP ++ +L ET G+ Sbjct: 668 MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+M+I++ ++ Y+ EAD R+AMGKK E + + E+F +G NG SK Sbjct: 728 IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + + Sbjct: 788 LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867 R I ++ P VN +F I + L A++ VG I+ + D Sbjct: 848 CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + ++D N+RV ESL+ AGA D GYSR L+ ++ A +K ++F Sbjct: 908 YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967 Query: 928 AHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 + G + + + E+ +LG Y SGHPLD ++ L Sbjct: 968 SALGGESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTSL 1027 Query: 984 E--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 S G +++ ++ + ++ ++K GS VT + + E F Sbjct: 1028 SVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080 >gi|15835446|ref|NP_297205.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg] gi|270285627|ref|ZP_06195021.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg] gi|301337023|ref|ZP_07225225.1| DNA polymerase III subunit alpha [Chlamydia muridarum MopnTet14] gi|14194688|sp|Q9PJJ7|DPO3A_CHLMU RecName: Full=DNA polymerase III subunit alpha gi|7190859|gb|AAF39632.1| DNA polymerase III, alpha subunit [Chlamydia muridarum Nigg] Length = 1237 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 378/1077 (35%), Positives = 579/1077 (53%), Gaps = 66/1077 (6%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + K PA+A+TD NLF A++F + I+PII Sbjct: 4 IPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+L + + K+ ++LL EGY+ L L S Y + RI Sbjct: 64 GCELYVAPSSRFDKKKERKSQVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L++ ++GLI L+ SG I +A S + EK LL ++ LF + + +Q H+ Sbjct: 121 DRELLKQ-HSKGLICLSACLSGSIAQAALE-SEEALEKDLLWYQDLFQEDFFSEVQLHKS 178 Query: 192 YDRYRE----------------------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ ++ + VATN+ +L +D+ AH+ Sbjct: 179 SEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLAHE 238 Query: 230 VLMAVA---------HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V +T V R + + Y K+ EM +F+D PE + NT+ +A Sbjct: 239 ILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIVAD 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328 RC+ L P ++ ++ E E L GL+ + G I Sbjct: 299 RCNLELDFVTKHYPIYVPEDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPELLGHI 358 Query: 329 AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 A+ + +D ++RL E +I Y LIV D I WAK + IPVGPGRGSGAGS Sbjct: 359 AQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R++VI Y ++G E VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHGKENVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L P S+V+ + K IP+ A S + D R+ + Sbjct: 479 QIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNATIASA--LESDPDLRQLYID 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++KLEG R+ HAAG++I PL+ +P+ S + TQ++MK +E Sbjct: 537 DAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + + G+ + + +P +D T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++P+LK Sbjct: 657 ESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK E+M K++E+F S AS NGI Sbjct: 717 ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRASANGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +IA IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K Q+A NI ++PP +N DF+ I +SL A+KGVG + I+E + P+ Sbjct: 837 KLIQEAHSMNIPVLPPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEEREKNGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+DF R D KK+ ++ LESLV AG+ +CF ++ + L+++ +K Sbjct: 897 RSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREKKEAATG 956 Query: 923 HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ T I+ E + + E+ +LG Y + HP+D K +L + Sbjct: 957 VLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLTAHPMDAVKHLLPFLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032 + ++ G+ +R ++ K + +K + S+ YE + Sbjct: 1017 VVQSKDFEGLPHGSVVRTVFLIDKVTTKISSVEHKK---FALLQVSDEEDSYELPIW 1070 >gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205] gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205] Length = 1187 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 378/1035 (36%), Positives = 578/1035 (55%), Gaps = 39/1035 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A++ PA+AITD +NL +A++F GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + ++ ++ LL + G++ L E+VSR ++ Q Sbjct: 63 MGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSVPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E E LI+L G + + ++ Q AE L + FG+R+Y++L R Sbjct: 108 VQKEWVLE-QAEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + V+LA +++ +VA N+ F+ ++D+ AH+ + +A V+ RP+ Sbjct: 166 RVGEEDFIVEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDKRPKPY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K +M +FSD+P A+ENT +IA+RC+ LQ+ LP F + I E Sbjct: 226 SPEQYFKTAEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285 Query: 309 NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + R L + + Y +R+ +E+++I +M F GYFLIV DFIQW Sbjct: 286 HLSREGLEERLNHLYPIDERDEDWPDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC Sbjct: 346 AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P P Sbjct: 406 RDRVIEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465 Query: 487 VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 QAI + + ++ + D + E++ KLEG+ R+ HA G+VI ++ Sbjct: 466 DLKQAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DL 598 + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + +R ++ Sbjct: 526 YSAVICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSDVPLNI 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP+D I Sbjct: 586 ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LRRAMG Sbjct: 646 PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM KQ++ FI GA++ I + A +IF+ + KFA YGFNKSHAAAYA+++Y TAW Sbjct: 705 KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837 +K HYP EF+AA M+ EM N + + D R ++++PPSVN F + + I Y Sbjct: 765 LKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNKLEVLPPSVNMSLYHFHAIDERTIVY 824 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKGVG + ++++ D P+ L DFC R+D KK+N+R LE+L+ AGALDC G Sbjct: 825 GLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L+ L + A+ NR ++F + + + + VR + E+ Sbjct: 885 ERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG Y +GHP+DVY+ L+ E T RG A +V+ R Sbjct: 943 DTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNR-----I 997 Query: 1017 WVTFSEPAKEYEANF 1031 +T + E + Sbjct: 998 MITLDDGTARIEVSC 1012 >gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM 16973] gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM 16973] Length = 1238 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 355/1113 (31%), Positives = 557/1113 (50%), Gaps = 94/1113 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66 FVHL VH+ YS+L+G S+ N+++K A+ +AITD N+F EF Sbjct: 3 DFVHLHVHTYYSILDGQSSIENLVEKAVANGMKGMAITDHGNMFGTKEFYNYCKGVNARL 62 Query: 67 -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119 +PIIGC++ + K + + +++L GY+ LI+LVSR Sbjct: 63 KAEGKPAFKPIIGCEMYVA--HRKKTDKVFEKGDRSGYHLIVLAKNYTGYKNLIKLVSRS 120 Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 + +D R L+ EGLI+ + +G + R + A + + + ++FG Sbjct: 121 W-VDGFYMRPRTDREDLERFH-EGLIVCSACIAGEVPRKILSGDMEGAREAVEWYHRVFG 178 Query: 180 DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226 + Y+ +QRH D + ++ L + + ++ TN++ F+ +E+ E Sbjct: 179 EDYYLEMQRHEVKDPHVKANRETFPQQQRANKVLLTLGKEYGIKVICTNDAHFVDQENAE 238 Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 AHD L+ ++ + +R T + K R EM +F+D PEAL NT+EI + Sbjct: 239 AHDHLLCLSTGKDLDDPNRLIYTKQEWFKTREEMNEVFADQPEALTNTLEILDKVEVYSI 298 Query: 287 VHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAGLE 320 PI+P F E +++ EE E + + + G + Sbjct: 299 DSLPIMPFFPIPESFGTEEDIRRRYTKEQLFEEFTRDENGNEILSREEAEQKIEKLGGYD 358 Query: 321 VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 A ++ +R+ FEL+++ M F GYFLIV DFI Sbjct: 359 KLYRIKFEADYLAKLAYDGAKPLYGDPLPEEVAERIKFELHIMKTMGFPGYFLIVQDFIN 418 Query: 366 WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 A+ N + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF Sbjct: 419 SARNNLGVLVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D R +V+ +V++KYGH++VA IIT+G++ K +++DV R ++P Q + LCK+IP+ Sbjct: 479 DGRGKVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVARVERLPLEQANYLCKVIPDRLP 538 Query: 485 HPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + + AI REA D + ++ ++ LEG R HA G +I +S Sbjct: 539 DGMKMNLTNAIKAVPELREAEASPDERLSNTMKYAKMLEGTVRGTGIHACGTIICRDAIS 598 Query: 541 QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 VP+ D L TQ++ IE+ GLIK DFLGLKTL++L+++++ + G Sbjct: 599 DWVPVSVAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENIRISTGD 658 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL IP DD TY L T+G FQ ES+GM++ L +QP ED+IA+ +LYRPGP Sbjct: 659 VIDLDHIPIDDKLTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + RK KI P ++ LK+T G+ +YQEQVM +++ L+ ++ ++D LR Sbjct: 719 MDYIPDFIARKRDNSKIKYDLPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +AMGKK ++M+ + F G +KNG K + I+E KFA Y FNKSHA Y+ +++ Sbjct: 779 KAMGKKQIDKMNHLEGLFYEGGAKNGYPKEVLSKIWEDWKKFASYAFNKSHATCYSWVAF 838 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833 QTA++K HYP E++AA M+ ++N+ +I KF + + I + P VN F V Sbjct: 839 QTAYLKAHYPAEYMAAVMSRNLNNIAEITKFMDECKAMGISTLGPDVNESRQKFSVNKKG 898 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I + LAAIKG+G A I+ + PF + D R++ +NR+ LESLV +G LD Sbjct: 899 EIRFGLAAIKGMGDAAADAIIAERDKNGPFKDVFDVVQRINLNAVNRKALESLVLSGGLD 958 Query: 893 CFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 F +R LD + +Y Q + + ++F + ++ Sbjct: 959 SFRIARESFFAPDNRGNQFLDTLIRYGQLYQMEQNEAQNSLFGGTEAVEIATPSVPSAEP 1018 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGNNIRLAA 999 + R E+ ++G Y S HPLD + I + E + + + Sbjct: 1019 WSPPERLNRERDLVGIYLSAHPLDDFGMIFHNLCNTACTEVGQDGRREELSKRDELIFGG 1078 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V S + K T+ G G+VT + E FF Sbjct: 1079 IVTSNKSKFTKTGKPCGFVTLEDFEGSGELAFF 1111 >gi|62184719|ref|YP_219504.1| DNA polymerase III subunit alpha [Chlamydophila abortus S26/3] gi|62147786|emb|CAH63532.1| putative DNA polymerase III alpha subunit [Chlamydophila abortus S26/3] Length = 1248 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 363/1075 (33%), Positives = 563/1075 (52%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+PII Sbjct: 10 IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 69 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + K+ ++LL GY+ L L S + + RI Sbjct: 70 GCEVYVAPSSRFDKKKEKKSRV--AHHLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 126 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + EGLI L+ S + +A S + EK L ++ LFG+ Y +Q H+ Sbjct: 127 DRELLSQ-HAEGLICLSACLSSSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 184 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + + VATN+ ++ +D+ AH+ Sbjct: 185 SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 244 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V + + + ++Y K+ EM +F+D PE + NT+E+A Sbjct: 245 ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMARLFADHPETITNTLEVAD 304 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330 +C+ L + + P ++ + Q E E LR GL + +A Sbjct: 305 KCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAASAAFLRELCEKGLSTKYTPEKLAHI 364 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGAGS Sbjct: 365 SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 424 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 425 VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 484 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L +P S+V+ + K IP + +A+ D E Sbjct: 485 QIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 542 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++ +LEG R+ HAAG++I L+ +P+ S + TQF+MK +E Sbjct: 543 DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 602 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + + G ++++ +P DD T+ LL T+GIFQ+ Sbjct: 603 SVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 662 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +LK Sbjct: 663 ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 722 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNGI Sbjct: 723 ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERARKNGIDA 782 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EKI Sbjct: 783 ELATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTSDSDDIEKIG 842 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K +A +I I+PP +N DF D I +++ AI+G+G I+E P+ Sbjct: 843 KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 902 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S+ DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 903 QSIRDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 962 Query: 923 HENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ I L + + + E+ +LG Y + HP+D K IL ++ Sbjct: 963 VMTFFSLNAMHQKHPIPLTPATNVVRRSKKDILKKEKELLGIYLTEHPMDAVKDILPRLS 1022 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 + E G IR ++ + + KG R + ++ YE +P Sbjct: 1023 VVSPGEFANLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1077 >gi|289705613|ref|ZP_06502003.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58] gi|289557663|gb|EFD50964.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58] Length = 1198 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 345/1067 (32%), Positives = 534/1067 (50%), Gaps = 52/1067 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA L+++ + ++AITD LF A +F KA AAG++PI Sbjct: 17 FVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPI 76 Query: 71 IGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + + + + + + LL T EG L + S Sbjct: 77 IGLEAYVAPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSI 136 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + R+ L + ++GLI TG SG + + A + F+ +F Sbjct: 137 ASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIF 195 Query: 179 G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G D Y + H +R + + +LA LP VATN+ + E D +AH+ L+A+ Sbjct: 196 GKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALLALQS 255 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--- 293 + +++ + + + E E I + Sbjct: 256 GSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKA 315 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ ++E + L + +GL R G R++ D+EL+VI M F Sbjct: 316 NYMPVFPTPEGEDETSWLIKEVASGLAYRYPDGV------PDHVRKQADYELDVIISMGF 369 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+ L+FERFLNPDR+ Sbjct: 370 PGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFERFLNPDRV 429 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF RR EVI YV KYG ERV I+T+G+++ K AL+D R + P+S + Sbjct: 430 SMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVMDQPFSMGE 489 Query: 474 RLCKL-IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRH 524 L K P A + L+ I D + FRE DP + E ++ LEGL R Sbjct: 490 SLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELVATDPVAKEVFETAKGLEGLKRQ 549 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK DFLGL+ LT++ Sbjct: 550 WGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISD 609 Query: 585 SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + DL + DD Y LL TLG+FQL+ MR L+ M+PD EDI Sbjct: 610 AIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDI 669 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697 A ++LYRPGP+ ++ Y RKNG+++I IHP ++ L T G+I+YQEQVM Sbjct: 670 SATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLIVYQEQVMA 729 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F G G S+ ++++L F+ Sbjct: 730 IAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFS 789 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R I ++ Sbjct: 790 DYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVL 849 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKK 876 PP VN + F I + + A++ VG + +++ D + DF ++V Sbjct: 850 PPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDFLAKVPLVV 909 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFA-----H 929 N+R +ES++ AGA D GY+R LL + ++ + ++FA Sbjct: 910 CNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDLFALGGNDE 969 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + +D + + + E+ +LG Y S HPL +L + + Sbjct: 970 DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQISRVLDD 1029 Query: 990 ---IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ + +++ + G+ + + FF Sbjct: 1030 DGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076 >gi|297153520|gb|ADI03232.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1] Length = 1233 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 334/1085 (30%), Positives = 544/1085 (50%), Gaps = 66/1085 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S FVHL H+ YS+L+GA L + ++A PAIA++D N+F A EF+Q A Sbjct: 36 MPDS--FVHLHNHTEYSMLDGAQKLKPMFGEVARQGMPAIAMSDHGNMFGAYEFAQVAKG 93 Query: 65 -AGIQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVST 105 GI+PIIG + + + + + + Sbjct: 94 FEGIKPIIGIEAYVAPSSRFVRKQEFWGPGGRRATSADGEGSKDVSGGGRFTHLTMWARN 153 Query: 106 AEGYQRLIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164 ++G + L L ++ Q R+ + + +G+I TG SG + N Sbjct: 154 SQGLRNLFWLSTQASYEGQFPAGKPRMDRELIADRP-DGIIATTGCPSGEVQTRLRLNQY 212 Query: 165 QVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222 A+ ++++FG + ++ L H +R +++LA +PL+ATN++ +++E Sbjct: 213 AEAKAAAAAYQEIFGRENYFLELMDHGLDIEREVREGLLRLATELNIPLLATNDAHYVTE 272 Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 + +AHD L+ + R R +YLK +EM S+FS+LPEA +NT+ IA R Sbjct: 273 DQADAHDSLLCIGVGKNKDDPGRFRFNGSGYYLKTAAEMRSLFSELPEACDNTLLIAERI 332 Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 +V + + +E+ LR + + GL +R Q R Sbjct: 333 ESYDEVFDYVDEMPRFP-GVPEGETQESWLRKEVLEGLAMRYG------APVPQHILDRF 385 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 + E++VI M FS YFL+VAD + A++N IP+GPGRGS GS+ AYA IT++ PL Sbjct: 386 ETEMSVIGPMGFSSYFLVVADICRHARENKIPLGPGRGSCTGSIVAYATRITELCPLEHG 445 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R++ PD D+DF +RD ++RYV KYG E A + TFG ++AK A++D Sbjct: 446 LLFERFLNPERINPPDVDLDFDDRQRDRMVRYVTEKYGEEYTAMVNTFGKIKAKNAIKDS 505 Query: 462 GRALQMPYSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLL 512 R L PYS +R+ K +P D S + + R+ + V R++ Sbjct: 506 SRILGYPYSHGERITKALPPDQNGKSAPLAAVFDSSHERYGEAGEIRQMYDNEQDVKRVI 565 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 + ++ +EGL R HAA +++ L+ +P++ + +T F+ E GLIK D Sbjct: 566 DTARGVEGLTRGTGVHAAAVILSKTKLTDRIPLHMRASDGVKITGFDYPSCEAMGLIKMD 625 Query: 573 FLGLKTLTLLQKSLDFLAQRGV-----------KVDLSLIPFDDHETYHLLTTKGTLGIF 621 FLGL+ L ++ ++++ + + +IP DD TY LL T G+F Sbjct: 626 FLGLRNLGVIDQAIENIRENRGTSLATVDPLDGDPSTVVIPLDDATTYRLLAEGNTFGVF 685 Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID 679 QL+ GMR L+ M+P EDI A+ +LYRPGP+ + Y +RK G+++I IHP + Sbjct: 686 QLDGGGMRVLLKQMEPTRFEDIAAVNALYRPGPMAANAHTNYAHRKTGRQEITPIHPELR 745 Query: 680 ----PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735 P+L T +++YQEQ+M IA+ L+GY+L AD+LRRAMGKK E + + ++F SG Sbjct: 746 DALEPILGNTFHLLVYQEQIMAIARELAGYTLGGADLLRRAMGKKKPEVLAAEWDKFHSG 805 Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795 NG + +++++ F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T Sbjct: 806 MRGNGYGEEAIKALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSV 865 Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM- 854 D+ +K + DAR+ ++++ P VN +F + + + L +++ VG ++ Sbjct: 866 GDDKDKAAIYLADARKNGVRVLQPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIEAVID 925 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 F S DF +VD LN+R ESL+ AG D G+SR L ++ Sbjct: 926 ARRRKGKFSSFADFLDKVDLPALNKRAAESLIKAGTFDSLGHSRKGLTAIHEDAIDAIIP 985 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVRFENEQRVLGFYFSGHPLD 969 V+K + +++FA G S + + E+ +LG Y S HPLD Sbjct: 986 VKKAASFGQDDLFADLGGEGSSEPAFGLDFPVDDTEWPRRQLLATEREMLGLYVSAHPLD 1045 Query: 970 VYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + IL + E +A+ +++L+ ++ Q K T++G+ V ++ E Sbjct: 1046 GAEHILSRARDCSIAELLASGRTTGDVQLSGLITGIQLKMTKQGNAWAIVNLADRDAGIE 1105 Query: 1029 ANFFP 1033 FFP Sbjct: 1106 VLFFP 1110 >gi|225021950|ref|ZP_03711142.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC 33806] gi|224945236|gb|EEG26445.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC 33806] Length = 1203 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 323/1073 (30%), Positives = 516/1073 (48%), Gaps = 47/1073 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + K SFVHL H+ YS+L+G ++ + ++ A+ +TD N+F + F + Sbjct: 14 MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110 AGI+PIIG + + M Q + ++ TAEG Sbjct: 74 AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L L S Q + R+ + E G+I TG SG I A + Sbjct: 134 NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192 Query: 171 LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 ++ ++G D ++ L H + S+++++ +LP + TN+ ++ E AH Sbjct: 193 AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRRLDLPPLVTNDCHYVLESQAHAH 252 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQ 286 +V++ V +S DR + Y +E + D P+A +NT+ IA R Sbjct: 253 EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + + LR++ + GL +Y +R ++E+ Sbjct: 313 IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLR-----DRFDGAEVPANYIERAEYEIG 367 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI + YFLIVA+ I+ A+ I VGPGRGS AGS+ AYALTIT+IDP+ LLFER Sbjct: 368 VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--A 464 FLNP+R S PD DIDF RR E+IRY ++G +++AQ+ITFG+++ K A++D R Sbjct: 428 FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487 Query: 465 LQMPYSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515 Q Y DR+ K L P A +S + R+ DP V ++ + + Sbjct: 488 GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEG+ R A HA +++ PL +PM++ +T + E GL+K DFLG Sbjct: 548 RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607 Query: 576 LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+ LT++ +L+ + R +DL + D Y LL TLG+FQL+S GM++ L Sbjct: 608 LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLRR 667 Query: 635 MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688 MQP DI+A ++LYRPGP+ + + Y +RKNG++ I IHP ++ +L ET G+ Sbjct: 668 MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 I+YQEQ+M+I++ ++ Y+ EAD R+AMGKK E + + E+F +G NG SK Sbjct: 728 IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 ++ + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D +K + + Sbjct: 788 LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847 Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867 R I ++ P VN +F I + L A++ VG I+ + D Sbjct: 848 CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927 + ++D N+RV ESL+ AGA D GYSR L+ ++ A +K ++F Sbjct: 908 YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967 Query: 928 AHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 + G + + + E+ +LG Y SGHPLD ++ L Sbjct: 968 SALGGESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTSL 1027 Query: 984 E--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 S G +++ ++ + ++ ++K GS VT + + E F Sbjct: 1028 SVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080 >gi|239917850|ref|YP_002957408.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665] gi|281413657|ref|ZP_06245399.1| DNA polymerase III subunit alpha [Micrococcus luteus NCTC 2665] gi|239839057|gb|ACS30854.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665] Length = 1198 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 345/1067 (32%), Positives = 534/1067 (50%), Gaps = 52/1067 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+L+GA L+++ + ++AITD LF A +F KA AAG++PI Sbjct: 17 FVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPI 76 Query: 71 IGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118 IG + + + + + + LL T EG L + S Sbjct: 77 IGLEAYVAPGQQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSI 136 Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 L + R+ L + ++GLI TG SG + + A + F+ +F Sbjct: 137 ASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIF 195 Query: 179 G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 G D Y + H +R + + +LA LP VATN+ + E D +AH+ L+A+ Sbjct: 196 GKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALLALQS 255 Query: 237 STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--- 293 + +++ + + + E E I + Sbjct: 256 GSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKA 315 Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353 ++ ++E + L + +GL R G R++ D+EL+VI M F Sbjct: 316 NYMPVFPTPEGEDETSWLIKEVASGLAYRYPDGV------PDHVRKQADYELDVIISMGF 369 Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413 GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+ L+FERFLNPDR+ Sbjct: 370 PGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFERFLNPDRV 429 Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473 SMPDFD+DF RR EVI YV KYG ERV I+T+G+++ K AL+D R + P+S + Sbjct: 430 SMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVMDQPFSMGE 489 Query: 474 RLCKL-IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRH 524 L K P A + L+ I D + FRE DP + E ++ LEGL R Sbjct: 490 SLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQ 549 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584 HAAG+++ P+ ++P+ R ++ +TQF+ E GLIK DFLGL+ LT++ Sbjct: 550 WGVHAAGVIMSSVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISD 609 Query: 585 SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 +++ + DL + DD Y LL TLG+FQL+ MR L+ M+PD EDI Sbjct: 610 AIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDI 669 Query: 644 IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697 A ++LYRPGP+ ++ Y RKNG+++I IHP ++ L T G+I+YQEQVM Sbjct: 670 SATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLIVYQEQVMA 729 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F G G S+ ++++L F+ Sbjct: 730 IAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFS 789 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 DY FNK+H+AAY ++SY TA++K HYP E++AA +T D+ +K+ + + R I ++ Sbjct: 790 DYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVL 849 Query: 818 PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKK 876 PP VN + F I + + A++ VG + +++ D + DF ++V Sbjct: 850 PPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDFLAKVPLVV 909 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFA-----H 929 N+R +ES++ AGA D GY+R LL + ++ + ++FA Sbjct: 910 CNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDLFAPGGGDE 969 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + +D + + + E+ +LG Y S HPL +L + + Sbjct: 970 DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQISRVLDD 1029 Query: 990 ---IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ + +++ + G+ + + FF Sbjct: 1030 DGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076 >gi|296117566|ref|ZP_06836150.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969297|gb|EFG82538.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM 20306] Length = 1192 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 302/1072 (28%), Positives = 516/1072 (48%), Gaps = 50/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + ++++ + PA+ +TD N+F + F ++ Sbjct: 4 MAKNSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQEMPAVGMTDHGNMFGSDAFYRRMTK 63 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + +L A G L + Sbjct: 64 AGVKPIIGIEAYMAPGSRFNKKRQLWGTPDQKRDDVSASGAYLHQTMLAENATGLSNLFK 123 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 124 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 182 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E +H+ ++ Sbjct: 183 QDIYGRDNYFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 242 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + DR + Y +E + D +NT+ IA R + Sbjct: 243 CVQTGKTLMDPDRFKFDGTGYYIKTAEQMRELWDHMVPDGCDNTLWIAERVESYDSLWEE 302 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + L ++ + GL+ ++Y +R ++E++VI Sbjct: 303 HSHDRMPVADVPEGHTPTTWLTHEVMEGLK-----DRFDGKEVPEEYIKRAEYEISVIDM 357 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 358 KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 417 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I+Y ++G +++AQ+ITFG+++ K A++D + Sbjct: 418 ERPSAPDIDIDFDDRRRGEMIQYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVHFGQPG 477 Query: 471 QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 L P A + + ++ + R+ DP V ++ + ++ LE Sbjct: 478 FQMADRINGALPPAVMAKDIPLAGITDPEHERYSEAAEVRQMVETDPDVKKIYDTARGLE 537 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 538 GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 597 Query: 580 TLLQKSLDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ +L + + DL + Y LL++ TLG+FQL+S GM++ L+ M Sbjct: 598 TVIGDALANIKKNRGIDLNLEDLHADDPQVSKVYDLLSSGDTLGVFQLDSGGMQELLKRM 657 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 658 KPTGFKDIVASLALYRPGPMGVNAHWNYADRKNGRQEITPIHPELEEPLSEILGETYGLI 717 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q L+ Y+ EAD R+AMGKK E + ++ E+F G NG SK + Sbjct: 718 VYQEQIMRISQKLANYTAGEADGFRKAMGKKKPEVLAQEYEKFSQGMFTNGYSKGAVDAL 777 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K ++ E++AA +T D +K + D Sbjct: 778 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYFAPEYMAALLTSVADKKDKSAIYLADC 837 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 R I+++PP VN DF+ + I + + AI+ VG+ I+EA D F S D+ Sbjct: 838 RHLGIKVLPPDVNESAEDFEAVGDDIRFGMGAIRNVGSEVVESIIEARRDKGAFKSFSDY 897 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++ +RV ESL+ AGA D G+ R L+ ++ Q +K ++FA Sbjct: 898 LDKISLVACTKRVTESLIKAGAFDSLGHPRKGLMLIQEDAVDSVQSTKKAADKGQFDLFA 957 Query: 929 HEKGTFSDKIT--LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 G + ++ + E+ +LG Y SGHPLD ++ L Sbjct: 958 SFGGDDGESVSSFAIDIPEESWDRKHELALEREMLGLYVSGHPLDGFEDALAAQTDTALT 1017 Query: 985 ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 V G + + ++ ++ +++ GS VT + + E F Sbjct: 1018 TVVAGEMRNGQEMVIGGIISGVDRRFSKRDGSPWAIVTIEDHHGAQVEILVF 1069 >gi|255326240|ref|ZP_05367326.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296] gi|255296694|gb|EET76025.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296] Length = 1180 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 364/1069 (34%), Positives = 553/1069 (51%), Gaps = 54/1069 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + F HL VH+ YS+L+GA L ++ ++A +D LF A +F ++A A Sbjct: 1 MA-TKEFTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 I+PIIG + + + + + + + T EG L Sbjct: 60 HDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 S L Q R+ LQ ++GLI TG SG + A + F+ Sbjct: 120 SSIASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFR 177 Query: 176 KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 +FG D Y + H +R + + +LA LP VATN+ + +ED+ AH L+ Sbjct: 178 DIFGKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLC 237 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V + ++ R + + YL++ EM ++F D+P A ENT+EIA RC+ A + Sbjct: 238 VQSGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYM 297 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F E + EE+ + GL R QG R++ ++E+ VI M Sbjct: 298 PNFPVPEGE----NEESWFVKEVEKGLHYRFPQGV------PDTVRKQAEYEVGVITSMG 347 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL L+FERFLNPDR Sbjct: 348 FPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDR 407 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFD+DF RR EVI YV KYG E+VAQI+TFG+++AK AL+D R + PYS Sbjct: 408 VSMPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467 Query: 473 DRLCKLIPND-PAHPVSLQAIADDSRFREA----------RLADPSVDRLLEISQKLEGL 521 +RL K +P D ++L + ++ R A D ++ E ++ LEGL Sbjct: 468 ERLTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDPVDKIYGQVFETAKGLEGL 527 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R HAAG+++ + L ++P+ R +TQF+ E GLIK DFLGL+ LT+ Sbjct: 528 KRQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587 Query: 582 LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640 + +++ + RG+ +DL + DD E+Y LL TLG+FQL+ MR L+ M+P+ Sbjct: 588 ISDAVENIKSNRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647 Query: 641 EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694 E I A+++LYRPGP+ ++ Y RKNGK++I IHP ++ L T G+I+YQEQ Sbjct: 648 EHISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQ 707 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ F G NG S+ ++++L Sbjct: 708 VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILL 767 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+DY FNK+H AAY ++SY TA++K HYP E++AA +T DN +K+ + + R I Sbjct: 768 PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827 Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873 ++ P VN + F + I + + AI+ VG ++ A + ++S DF +V Sbjct: 828 TVLAPDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929 + N+R +ESL+ AGA D G++R L + A V++ ++F Sbjct: 888 LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988 + +T+ + + E+ +LG Y S HPL + L + + Sbjct: 948 DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007 Query: 989 ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032 G + LA M+ ++ + G++ V +P+ FF Sbjct: 1008 DSHVRDGETVTLAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056 >gi|298244334|ref|ZP_06968140.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297551815|gb|EFH85680.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 1170 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 321/1054 (30%), Positives = 540/1054 (51%), Gaps = 50/1054 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + F HL VH+ YSLL+G + ++ + A +AITD ++ A+EF + GI Sbjct: 2 ASDFAHLHVHTEYSLLDGLSRIPTLIKQAKALGMEHLAITDHGAMYGAMEFYLECQKQGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 P+IG + + N K +VLL T GY+ L++L + + Sbjct: 62 HPVIGMEAYLVDDVNYKPKKSN-----AYWHLVLLAHTQAGYENLMKLTTLGFTQGLYYG 116 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFG-DRLYVN 185 RI L + EGLI + G I A + + ++ +FG + Y+ Sbjct: 117 KPRIDKKML-KNHAEGLIATSSCLGGEIPELLVERQDMDSARRAVRWYQDVFGPENFYLE 175 Query: 186 LQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 Q+H + + Q+ + +P + TN+ +++++ AHD+ + + Sbjct: 176 FQQHYGKGSPQDACNTGLYQIYQSMHVPAILTNDLHYVNKDQANAHDLFLCIQMGNRYDD 235 Query: 243 KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 DR R + +++LK+ EM ++ D+P+ L NTV +A RC LP F Sbjct: 236 PDRFRFDSDEYFLKSPQEMALLYPDIPDVLRNTVLLAERCQIDPTAKKAGLPTFDIPAGF 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 ++ L + + G G + ++++D+E ++I + F+ YFLI Sbjct: 296 P---SPDDYLYDLCLKGARW-------RFGEVSTSVQEQIDYEFSIIKQKGFASYFLIQQ 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +A+ + I RGS AGS+ AY L IT++DPLR+ LLFERF+NP+R MPD D+D Sbjct: 346 DVTNYARDHGI-TCLARGSAAGSLIAYCLGITNVDPLRYGLLFERFMNPERNDMPDIDMD 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 + RR+EVI Y +YG E+ AQ++TF +L AK +++DV RAL +R+ +LIP Sbjct: 405 YPDSRREEVINYTMQRYGLEKTAQMVTFNTLAAKGSVKDVARALGKT-DLGERITRLIPT 463 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + ++ D + R + V +++ +++LEGL R HAAG+++ RPL++ Sbjct: 464 GPKVTL-QSSLDDVAELRMLYTQNGEVSEIIDFARQLEGLNRSTGVHAAGVLLSARPLNE 522 Query: 542 LVPMYRDVRSDLP---VTQFNMKWIEKA-GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 +VP+ R D V + KW+E GLIK+DFLGL L++L+++L+F+A+ + Sbjct: 523 IVPLSRKDPKDPTTPLVCGYEHKWLEDNLGLIKYDFLGLANLSVLREALNFVARTQGEEL 582 Query: 598 LSLIPF-----------DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646 L + + +L+ + +FQLES+ MR+ L+ ++P CIEDI+A+ Sbjct: 583 LLEHIPVDPTPDPVLRERREKAFAMLSRGDAIAVFQLESAKMREYLKQLKPTCIEDIMAM 642 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 V+LYRPGP+D+I + K+G++KI + P + L E+ GVI+YQ+QV+QIA L+G+S Sbjct: 643 VALYRPGPMDSIPEFVACKHGRKKIEYLDPRLSEWLAESYGVIVYQDQVLQIANNLAGFS 702 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 + + R+A+ KK EE++ K FI G NG+ A +FEL+ F YGFNK+HA Sbjct: 703 WGKVNKFRKALSKKKMEEVEGYKGDFIQGCVNNGMKAAAAEKLFELVLPFGGYGFNKAHA 762 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 A+Y V++Y TA++K +YP E++AA++T + + +++ F +A + ++++ P +N + Sbjct: 763 ASYGVVAYYTAYLKANYPAEYMAAALTADAGDSKQVAVFIAEAHKMGVKVLGPDINKSEL 822 Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V + I + L AIKG+G I+ A + PF SL DFC RV + + V+E+L Sbjct: 823 GFSVEEGNIRFGLLAIKGIGEGPITEILRARTDNGPFTSLVDFCVRV---GVGKGVIENL 879 Query: 886 VFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEK 942 + AGALD R QLL S++ Y + + R + ++F + +L + Sbjct: 880 IKAGALDSLEGEGKRHQLLASVETAITYGKRERQAREREVFSLFKDLASAPVPLVFSLVE 939 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGN-NIRLAA 999 + + + E+ ++G Y S HPL + E + G I L Sbjct: 940 AAEISRKQLLDWEKELIGIYISPHPLTYLAHLFDGRVTHSTTELLEKGAEVGKGTITLGG 999 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ + + T+KG + T + FP Sbjct: 1000 VITNIRAFSTKKGDMMCSFTLEDAQGGMVVTVFP 1033 >gi|122879149|ref|YP_200601.6| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577178|ref|YP_001914107.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521630|gb|ACD59575.1| DNA polymerase III, alpha subunit subfamily, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1196 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + +E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA V+ ++ KG +V + E + Sbjct: 1004 ASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|58426179|gb|AAW75216.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1321 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 127 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 186 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 187 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 234 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 235 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 292 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 293 ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 352 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 353 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 412 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 413 YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 468 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 469 NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 528 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 529 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 588 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 589 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 648 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 649 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 708 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + T +FQ ESSGMR+ L+ Sbjct: 709 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 768 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 769 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 828 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 829 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 888 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 889 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 948 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 949 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 1008 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 1009 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 1068 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + +E+ LGFY SGHP D ++ +R++ + Sbjct: 1069 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1128 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA V+ ++ KG +V + E + Sbjct: 1129 ASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1184 Query: 1031 FF 1032 F Sbjct: 1185 AF 1186 >gi|84623509|ref|YP_450881.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367449|dbj|BAE68607.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1196 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + +E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA V+ ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|306836456|ref|ZP_07469431.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium accolens ATCC 49726] gi|304567675|gb|EFM43265.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium accolens ATCC 49726] Length = 1190 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 301/1073 (28%), Positives = 514/1073 (47%), Gaps = 51/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F ++ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V DR + Y + + D +NT+ IA R +V Sbjct: 240 CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ + GL+ R ++Y +R +E++VI Sbjct: 300 HTHDRMPIADVPEGHTPTSWLTHEVMEGLQRRFPG-----RDVPEEYIERAKYEISVIEM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDPL LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + ++ + R+ DP V ++ + ++ LE Sbjct: 475 FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ +++ + + L + Y LL+ TLG+FQL+S GM++ L+ M Sbjct: 595 TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 655 KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F SG +NG SK+ + Sbjct: 715 VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWSGMQENGYSKSAMDAL 774 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + D Sbjct: 775 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 R I ++PPSVN DF+ I + + AI+ VG+ I+ + F S D+ Sbjct: 835 RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++D ++RV E+L+ AGA D F R L+ ++ Q +K ++FA Sbjct: 895 LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954 Query: 929 HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G + E+ +LG Y SGHPLD ++ L Sbjct: 955 GFGGGDDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTPL 1014 Query: 984 EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS VT + + E F Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067 >gi|227503307|ref|ZP_03933356.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC 49725] gi|227075810|gb|EEI13773.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC 49725] Length = 1190 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 300/1073 (27%), Positives = 513/1073 (47%), Gaps = 51/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ PA+ +TD N++ + F ++ + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V DR + Y + + D +NT+ IA R +V Sbjct: 240 CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ + GL+ R ++Y +R +E++VI Sbjct: 300 HPHDRMPIADVPEGHTPTSWLTHEVMEGLQQRFPG-----RDVPEEYIERAKYEISVIEM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDPL LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + ++ + R+ DP V ++ + ++ LE Sbjct: 475 FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ +++ + + L + Y LL+ TLG+FQL+S GM++ L+ M Sbjct: 595 TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 655 KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG SK+ + Sbjct: 715 VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + D Sbjct: 775 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868 R I ++PPSVN DF+ I + + AI+ VG+ I+ + F S D+ Sbjct: 835 RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 ++D ++RV E+L+ AGA D F R L+ ++ Q +K ++FA Sbjct: 895 LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954 Query: 929 HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G + E+ +LG Y SGHPLD ++ L Sbjct: 955 GFGGGDDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTPL 1014 Query: 984 EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS VT + + E F Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067 >gi|166712747|ref|ZP_02243954.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1196 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 414/1082 (38%), Positives = 605/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G + R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRNSLAGRLFSEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N++ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALNAAGVRGLPVVASNDARFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R+++ GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + D PVTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ IP DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEIILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE+++ AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + S ++ L + +E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSASAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA V+ ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1142 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 390/1038 (37%), Positives = 574/1038 (55%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P ++ L++H+ +S+ +G + + ++ K PA+ I+D N F+ ++F + Sbjct: 1 MT-APVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+ + I +L++ GY RL EL++ Y+ + Sbjct: 60 AGIKPVGAADVWI----------GNPAAPDKPFRAMLIIRNEAGYLRLSELLTAAYVGEG 109 Query: 125 GK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + WL GLI L+G G + + A L + F + Y Sbjct: 110 RNLHHAELNPEWLDSGDNSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + D + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I +PP +N F N+ Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGITFLPPDINESSYRFVPDGNKQ 823 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A A F L DFC RV +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R L+ ++D + A +K +F + L + S + Sbjct: 884 IEPNRAMLMANIDLAMENAD--QKAANANQGGLFDMMDDAIEP-VKLSAAPAWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y+ +R+ +++R+A + + G Sbjct: 941 EEKTVIGFYLSGHPFAPYEQEIRRFAPVSLGRLKTQ---DSVRVAGFATGVRTMNGKSG- 996 Query: 1014 RIGWVTFSEPAKEYEANF 1031 R V + + E + Sbjct: 997 RFAIVQLEDRSGFAEVSV 1014 >gi|300871757|ref|YP_003786630.1| DNA polymerase III subunit alpha [Brachyspira pilosicoli 95/1000] gi|300689458|gb|ADK32129.1| DNA polymerase III, alpha subunit [Brachyspira pilosicoli 95/1000] Length = 1208 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 361/1029 (35%), Positives = 572/1029 (55%), Gaps = 34/1029 (3%) Query: 17 HSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSALEFSQKA 62 H+ YS+L+GA + ++ +D+ PAIA+TD N+F A+EF +A Sbjct: 2 HTQYSILDGAARIKSLYSKVDKTKRLIPGLIDRAKELDMPAIAMTDHGNMFGAMEFFSEA 61 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 GI PIIGC++ + + + + +VLL EGY L +LV+ Y Sbjct: 62 KDKGIIPIIGCEVYVAPKTRFDK-KLDNSEEKSAMHLVLLAKDKEGYNNLCKLVTFGYT- 119 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + R+ +++ +GLI L+ G I A + A K +K +FG+ Sbjct: 120 EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIFGEDF 178 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ LQ H D+ S + +LA H + LV TN+ ++S+ED +AH++L+A+ + Sbjct: 179 YIELQDHGLAEDKTLNSALYKLANHHNIELVVTNDVHYVSKEDAKAHEILLAIQTKATLD 238 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R + + + +LK EM F+ LP+A ENTV+IA +C ++ ++ Sbjct: 239 SPRRYKFPSNEFHLKTEEEMKKSFAKLPKAFENTVKIAEQCK---DLNIMTKTYYMPNYE 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E LR + GL ++ +RLD EL VIA+M F GYFL+V Sbjct: 296 LPNGETETTALRKMCIEGLNKHYNND------IPKEAMERLDMELGVIAKMGFEGYFLVV 349 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DFI +A+ +++ VGPGRGS AGS+ A+A IT ++PL ++LLFERFLNP+R SMPD D+ Sbjct: 350 QDFINYARNHDVAVGPGRGSAAGSIVAFASGITKVNPLDYNLLFERFLNPERKSMPDIDV 409 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF D+R+ VI YV NKYG + V+QI TFG+L ++ +RDV R + + + DRL K IP Sbjct: 410 DFQDDKREVVIDYVTNKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRLAKSIP 469 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +D V + D + FR+ + + EIS +L+GL R+ HAAG++I P++ Sbjct: 470 DDIKRVVDIYDHPDCAEFRKEIDNSRELKNMYEISMRLDGLVRNVGLHAAGVIISSHPIA 529 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 L P+Y+D ++ Q+ M ++E AGLIK DFLG+K L L++ ++ + +R ++D+ Sbjct: 530 DLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKERYGKEIDID 589 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD Y + T G+FQ ES GMRQ L +QP +D+++ V+L+RPGP+ + + Sbjct: 590 KIPLDDEAVYKIFRHADTGGVFQFESPGMRQMLLNIQPTAFDDLVSSVALFRPGPLKSGM 649 Query: 660 --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 Y +RKN +++IV HP ++P+LKE+QGV+IYQEQ+M I++ + G++ +EAD LR+AM Sbjct: 650 DKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRAIGGFTAAEADDLRKAM 709 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 GKKI E+M+ +E+FISG + G + + +F+ + FA+YGFNKSH+ YA+I+YQ A Sbjct: 710 GKKIVEKMNSMREKFISGGLERGYDEELLNYLFDTMKGFAEYGFNKSHSVCYALIAYQEA 769 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837 ++K HYP+E+ A + + + +KI + + +Q NI+++ SV F + +I Y Sbjct: 770 YIKAHYPMEYYVALLNTVIADTDKIALYLNEIKQKNIEVVTASVFESDALFSQKNGKIVY 829 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +L A+KGVG A I E + F +LEDF RVD +NR+V E+L+ GA FG+ Sbjct: 830 ALHAVKGVGLQAALAIQEERENNGQFKNLEDFVKRVDVHLVNRKVYETLIKCGAFSDFGH 889 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954 + L+ SLD I +A +K + +F E T S + +EK +++ EN Sbjct: 890 TESALISSLDAILAHASNYQKETLSGQTMLFDSMSEDDTGSASLVIEKQVEYANNILMEN 949 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 E+ VLGF HP Y + E + A++++ + T+K S Sbjct: 950 EKEVLGFSLRYHPFARYITKIDYKYFNNLLELEELEDKYEFSIPAILMNISEGTTKKNSP 1009 Query: 1015 IGWVTFSEP 1023 + + + Sbjct: 1010 MLILKVIDL 1018 >gi|229093701|ref|ZP_04224800.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42] gi|228689586|gb|EEL43394.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42] Length = 1108 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAGRCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+LV++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEALVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|152976985|ref|YP_001376502.1| DNA polymerase III DnaE [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025737|gb|ABS23507.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1109 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 357/1026 (34%), Positives = 575/1026 (56%), Gaps = 46/1026 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + YSLL+ A ++ ++ + A+AITD N ++ + F + GI+PI Sbjct: 3 FVHLQCQTVYSLLKSACKIDELVARAKELGFSALAITDENVMYGVIPFYKACKKMGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASVFNEEE-----------ERAYPLVLLAENEVGYQNLLKISSTIMTKSKDG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GL ++ G G I++ + AE+ T++ +FG Y+++Q H Sbjct: 108 IPKKWLVHY-AKGLTAISPGKDGEIEQLLLQGKDERAEEVARTYQNMFG-HFYMSVQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D + L++V T ++ DRPR Sbjct: 166 IQDELLLQEKIEEFVRNMNIPIVATNDVRYINQNDALVQECLLSVQSGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ +EM ++FS + EAL NT+ IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSAEMEALFSHVEEALRNTIHIAERCHVEIPFHVNQLPKFPVP----TNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + RL EL VI+RM FS YFLIV DF+++A Sbjct: 282 AYLRRMCEEGLYK-------RYGTPKEVHVNRLYHELEVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N I GPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENRILTGPGRGSAAGSLVAYVLEITDIDPIAYNLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDLFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + R+ + +R+ EI++++EGL RH S HAAG+++ PL++ + + + Sbjct: 455 EA-YEESEALRDFIQGNLLYERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTKSIAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ L G ++D+ + D + Sbjct: 513 GHNDVYVTQYPADVLEELGLLKMDFLGLRNLTLLENILTFITTTTGKQIDIRNVSLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+ + SLYRPGP++ I V+ K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVVVNSLYRPGPMEQIPVFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +++ Sbjct: 633 RRNIQYLHPDLKPILESTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKSRDILEE 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP++F Sbjct: 693 ERKHFVQGCLQNGYDQTSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLQF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS++ F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKITQYIRETKRKGFCVLPPSLHRSGYHFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E PF L +FC R+ K + R LE+ V++G D F SR L S+ Sbjct: 813 ATVTALIEEREKAPFQDLFEFCLRMPVKFVTERNLEAFVWSGCFDDFQVSRTTLFNSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA ++ K + + + E+ LGFY S +P Sbjct: 873 ALEYA------------SLARELGEESVPKSVYVQGKELSFIEQLNKEKETLGFYLSSYP 920 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y +++++ I +++ +G R + + +T+K ++ +VTF + E Sbjct: 921 TAQYASLVKELEIPSLAQAMRQ-KGKVQRAIVYITRVKIIRTKKMQKMAFVTFCDQNDEM 979 Query: 1028 EANFFP 1033 EA FP Sbjct: 980 EAVVFP 985 >gi|283856496|ref|YP_163273.2| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|283775500|gb|AAV90162.2| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 1174 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 460/1047 (43%), Positives = 638/1047 (60%), Gaps = 32/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L++ S +++LEGA+ +I PA I D N L+ + FS Sbjct: 1 MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L + + + +P L +GY L LVS +L Sbjct: 60 DGVQPIIGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRP 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ Sbjct: 117 LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++ LAY +PLVATN FL + + AHD ++ +A S V Sbjct: 176 ELSRRSEEIEEAAEEGLIDLAYDRNIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR +P+ ++K+ EM +F D+PEA++N++ IA+RC+ V + I Sbjct: 236 DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPV-----RKPILPSLAGD 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E LR A AGLE RLA + Y +RL +ELN+I M F GYFLIVADF Sbjct: 291 REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ Sbjct: 409 ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + P + +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL Sbjct: 469 SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP Sbjct: 529 VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + Sbjct: 589 LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ Sbjct: 649 ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 709 SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y EF AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+ Sbjct: 769 YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828 Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I + + F SL+DF +R++ + LNRR LESL AGA D G R + Sbjct: 829 KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 QS + I A + + R + +F E+ I L + + + + R E+ GF Sbjct: 889 KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005 +FS HP+D Y+ +L + I+ + R I ++AAM+ + Sbjct: 948 FFSSHPIDNYRSLLSSLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +G R V S+ + ++ A+ F Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034 >gi|325923963|ref|ZP_08185552.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325545546|gb|EGD16811.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 1196 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + FVHL VH+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G + I TP T + LL EGY L Sbjct: 62 FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L++R ++ + V I WLQ L L G R F + +AE++L Sbjct: 110 SRLLTRAWMEGHRPEGGVAIHPEWLQSGHV-NLFAL-AGRDSLAGRLFGEGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++++FGD L++ L R R +Q + A LP+VA+N+ FL D+ AH+ Sbjct: 168 ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT +A+RC+ +++ Sbjct: 228 RVCISSGRVLDDPKRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + E + ++ +R++A GL RL + IA G QDY RL+FEL+ I Sbjct: 288 YFLPAYPVPE----DETLDSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN Sbjct: 344 KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Y Sbjct: 404 PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + V L++++++LE L R Sbjct: 464 GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PLS+ P++ + VTQF+ +E GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + R VD++ +P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINVRHARAGIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I +N RK+G+++I+ P + +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ YSL AD+LRRAMGKK+ EM K +E F GA+K G+S A IF+L+ Sbjct: 704 QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F + R Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823 Query: 814 IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 + + PP VN F+ + I Y L AIKGVG I+E P+ +L DFC+R Sbjct: 824 LTVKPPRVNESAYMFEAATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V + KLNRR LE++V AGA+D G +R L+ L + K + + + R + ++F Sbjct: 884 VGTAKLNRRTLEAMVNAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943 Query: 932 GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990 + ++ L + E+ LGFY SGHP D ++ +R++ + Sbjct: 944 PSAPALRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKIL 1003 Query: 991 RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 LA +VV ++ KG +V + E + Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRVECS 1059 Query: 1031 FF 1032 F Sbjct: 1060 AF 1061 >gi|171463884|ref|YP_001797997.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1205 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 390/1071 (36%), Positives = 587/1071 (54%), Gaps = 67/1071 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P FVHL+VHS +S+ +G + +++ + D A+AITD +NLF + F A ++GI+ Sbjct: 4 PRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G + I + + ++LLV GY L EL+SR L +Q + Sbjct: 64 PITGADVWISNPQDPDQPH----------RLLLLVQNHSGYLNLCELLSRASLDNQSRGR 113 Query: 129 VRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 + +W E + GLI L+G G + A + A+ ++K Sbjct: 114 AEVDSAWFSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEK 173 Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 LF Y+ +QR D LA +LP+VAT+ F+ D+ AH+ + +A Sbjct: 174 LFPKSFYIEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIA 233 Query: 236 HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++ R + + Y + EM F+DLP AL N+VEIA+RC+ L + P LP Sbjct: 234 EGELLGNPRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPD 293 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARM 351 F + L ++ GLE + + A++ Y +RL FE+ I++M Sbjct: 294 FPTPPG----ITLDEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQM 349 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+ Sbjct: 350 GFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPE 409 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFCQ RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+ Y+ Sbjct: 410 RVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNF 469 Query: 472 VDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 VD + KL+PN P ++++ + + E + V +LL ++Q+LEG+ R+ HA Sbjct: 470 VDGIAKLVPNKPGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAG 529 Query: 531 GIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 G++I L+ P+Y +D S ++QF+ +E GL+KFDFLGL TLT+L + Sbjct: 530 GVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAE 589 Query: 587 DFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643 ++ ++ IP DD + + +L T+ +FQLES GM+ L +PD EDI Sbjct: 590 RWIKALHADRRDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDI 649 Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 IALV+LYRPGP+D I + RK+G++K+ P I+P+L+ET G+++YQEQVMQ+AQ++ Sbjct: 650 IALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIG 709 Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 GYSL AD+LRRAMGKK EEM + ++ F GA GIS+ A I++L+ +FA YGFNK Sbjct: 710 GYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNK 769 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K D NI++ P +NT Sbjct: 770 SHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINT 829 Query: 824 PCVDFKVGD----------NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872 +F + + Y L A++G G I++A PF L DFC+RV Sbjct: 830 GVYEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARV 889 Query: 873 DSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEKNRTN 921 D +++NRR +E+L+ AGA D G + R LL SL + + Sbjct: 890 DRRQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQAEASI 947 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 ++F L + V + R + E+ LG +GH D Y+ + Sbjct: 948 YQVSLFEVAGEENRHLPELVREPVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIRQ 1007 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + +A ++ S + ++G R+ T + E + Sbjct: 1008 PLSKVTE---GKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLY 1054 >gi|145588791|ref|YP_001155388.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1204 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 388/1075 (36%), Positives = 591/1075 (54%), Gaps = 68/1075 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP FVHL++HS +S+ +G + +++ + D+ A+A+TD +NLF + F A + Sbjct: 1 MA-SPRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PI G + + + + ++LLV GY L +L+S+ L +Q Sbjct: 60 GGIKPIAGADVWVSNPQDPDQPH----------RLLLLVQNHSGYLNLCQLLSKASLDNQ 109 Query: 125 GKQSVRICLSWLQEIG------------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 + + L+W E GLI L+ +G + A + +A+ L Sbjct: 110 SRGRAEVDLAWFSEPAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAAL 169 Query: 173 TFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 +KLF Y+ +QR D LA +LP+VAT+ F+ D+ AH+ Sbjct: 170 RLEKLFPKSFYIEIQRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEAR 229 Query: 232 MAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A ++ R + + Y + EM F+DLP A+ N+VEIA+RC+ L + P Sbjct: 230 VCIAEGELLGNPRRQKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQP 289 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNV 347 LP F ++ L ++ GLE + + A++ Y RL FE+ Sbjct: 290 RLPDFPTPPG----ITLDDYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKT 345 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I++M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERF Sbjct: 346 ISQMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERF 405 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFDIDFCQ RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+ Sbjct: 406 LNPERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQ 465 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526 Y+ VD + KL+PN P ++++ ++ + E + V +LL ++Q+LEG+ R+ Sbjct: 466 GYNFVDGIAKLVPNKPGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVG 525 Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 HA G++I L+ P+Y D ++QF+ +E GL+KFDFLGL TLT+L Sbjct: 526 MHAGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTIL 585 Query: 583 QKSLDFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 + ++ D+ IP DD + + +L T+ +FQLES GM+ L +PD Sbjct: 586 AAAERWIKALHADRKDWDIGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREAKPDR 645 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 EDIIALV+LYRPGP+D I + RK+G++K+ P I+P+L+ET G+++YQEQVMQ+A Sbjct: 646 FEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMA 705 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ GYSL AD+LRRAMGKK EEM + ++ F GA GIS+ A I++L+ +FA Y Sbjct: 706 QMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMERFAGY 765 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K D I++ P Sbjct: 766 GFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNQIRVFSP 825 Query: 820 SVNTPCVDFKVGD----------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868 +NT +F + I Y L A++G G I++A AD PF L DF Sbjct: 826 DINTGVYEFTPLRAPDATPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKDLFDF 885 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEK 917 C+RVD +++NRR +E+L+ AGA D G + R LL SL + Sbjct: 886 CARVDRRQVNRRAIEALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQA 943 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + ++F L + + + R + E+ LG +GH D Y+ Sbjct: 944 EASIHQVSLFEVAGEEHRHLPELVREPIWSEKKRLQEEKASLGLCLTGHMFDAYRDETAH 1003 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + V G + +A ++ S + ++G R+ T + E + Sbjct: 1004 FIRQPLSKLVE---GKDQLVAGIITSARMLTGQRG-RMMIATIDDGTAAVEVTLY 1054 >gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314] gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens YS-314] Length = 1204 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 321/1072 (29%), Positives = 526/1072 (49%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + D++ Q PA+ ITD N++ + F +K Sbjct: 17 MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 76 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + +L A G + L Sbjct: 77 AGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFY 136 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 137 LSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 195 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + S+++++ LP + TN+ ++ E +AH+ ++ Sbjct: 196 QDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 255 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + +DR + Y +E + D +NT+ IA R ++ Sbjct: 256 CVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEE 315 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ +AGLE R + Q+Y +R ++E++VI Sbjct: 316 HPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVIDM 370 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 371 KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 430 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D R Q Sbjct: 431 ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPG 490 Query: 469 YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 Y DR+ K L P A + + + R DP V ++ + ++ LE Sbjct: 491 YQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLE 550 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ +PL + +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 551 GVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 610 Query: 580 TLLQKSLDFLAQRGVKV--DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 T++ +++ + DL + +D ETY LL+ TLGIFQL+ GM++ L+ MQP Sbjct: 611 TVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQP 670 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ L ET G+I+Y Sbjct: 671 TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVY 730 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+I+Q ++ Y+ +AD R+AMGKK E + K+ F +G NG S +++ Sbjct: 731 QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWD 790 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K + D R Sbjct: 791 TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRH 850 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870 I+++ P +N ++F I Y L AI+ VG+ I+E F D+ Sbjct: 851 LGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLD 910 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 ++D+ N+R+ ESL+ AGA D G++R L+ ++ +K ++FA Sbjct: 911 KIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF 970 Query: 931 KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 D++ + + E+ +LG Y SGHPLD Y+ L Sbjct: 971 GAEAEDEVGGFFQIAVPD-DKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLT 1029 Query: 985 ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G + + ++ ++ ++K GS VT + E F Sbjct: 1030 TIIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1081 >gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter sp. DR1] gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter sp. DR1] Length = 1187 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 377/1039 (36%), Positives = 579/1039 (55%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLD---------------DAQHRATLLAMSDVGWKSLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 108 VKKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRIY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I + Sbjct: 226 SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKVGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 QLNILHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 TAW+K HYP EF+AA MT EM N + + D R N++++PPSVN F D Sbjct: 761 HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNLEVLPPSVNMSTYHFHASNDK 820 Query: 834 RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|260753893|ref|YP_003226786.1| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553256|gb|ACV76202.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1174 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 460/1047 (43%), Positives = 639/1047 (61%), Gaps = 32/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L++ S +++LEGA+ +I PA I D N L+ + FS Sbjct: 1 MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L + + + +P L +GY L LVS +L Sbjct: 60 DGVQPIIGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRP 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ Sbjct: 117 LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++ LAY ++PLVATN FL + + AHD ++ +A S V Sbjct: 176 ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR +P+ ++K+ EM +F D+PEA++N++ IA+RC+ V + I Sbjct: 236 DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPV-----RKPILPSLAGD 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E LR A AGLE RLA + Y +RL +ELN+I M F GYFLIVADF Sbjct: 291 REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ Sbjct: 409 ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + P + +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL Sbjct: 469 SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP Sbjct: 529 VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + Sbjct: 589 LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ Sbjct: 649 ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 709 SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y EF AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+ Sbjct: 769 YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828 Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I + + F SL+DF +R++ + LNRR LESL AGA D G R + Sbjct: 829 KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 QS + I A + + R + +F E+ I L + + + + R E+ GF Sbjct: 889 KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005 +FS HP+D Y+ +L + I+ + R I ++AAM+ + Sbjct: 948 FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +G R V S+ + ++ A+ F Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034 >gi|59800539|ref|YP_207251.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA 1090] gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae DGI18] gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID24-1] gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA 1090] Length = 1144 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + +E A+ + + + +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + G Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F D + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDSSGQAEIMV 1014 >gi|240079974|ref|ZP_04724517.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA19] gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 1144 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + +E A+ + + + +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + G Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDSSGQAEIMV 1014 >gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|239998209|ref|ZP_04718133.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae 35/02] gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA6140] gi|240112181|ref|ZP_04726671.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae MS11] gi|240114926|ref|ZP_04728988.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID18] gi|240117214|ref|ZP_04731276.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID1] gi|240122764|ref|ZP_04735720.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae PID332] gi|240124957|ref|ZP_04737843.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|240127469|ref|ZP_04740130.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae SK-93-1035] gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291] gi|260441259|ref|ZP_05795075.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae DGI2] gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11] gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18] gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1] gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332] gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62] gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291] gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11] gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18] gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1] gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332] gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62] gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 1144 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+P+ + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F++ +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M+ F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+S A+ + +E A+ + + + +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + G Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L DFC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R LL ++D A +K +F + + L + + S + Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ V+GFY SGHP Y +R++ +++RLA V + + ++G Sbjct: 941 EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997 Query: 1014 RIGWVTFSEPAKEYEANF 1031 I +V+ + + + E Sbjct: 998 -IAFVSLEDSSGQAEIMV 1014 >gi|190573488|ref|YP_001971333.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia K279a] gi|190011410|emb|CAQ45028.1| putative DNA polymerase III, alpha chain [Stenotrophomonas maltophilia K279a] Length = 1196 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 410/1082 (37%), Positives = 602/1082 (55%), Gaps = 77/1082 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50 + S FVHL VH+ +SL + + + +L + PA+A+TD N Sbjct: 1 MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59 Query: 51 NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 NLF+ ++F + A GI+PI G + I + + LL EGY Sbjct: 60 NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107 Query: 111 RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L L++R ++ + V I WL + G L L G R ++AE+ Sbjct: 108 SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228 +L ++++FGD L++ L R +Q +A LP+VA+N+ FL+ D+ AH Sbjct: 166 QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLAPTDFSAH 225 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ Sbjct: 226 EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 LP + + + + ++ + GLE RL + +A G +DY +RL+FELN Sbjct: 286 GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREDYFERLEFELNT 341 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF Sbjct: 342 IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Sbjct: 402 LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518 PY VD + KLIPN + + + V L++++ +L Sbjct: 462 PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQL 521 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574 E L R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFL Sbjct: 522 EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628 GL+TLT++ ++ + +R + + IP DD TY + T +FQ ESSGM Sbjct: 582 GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R+ L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+ Sbjct: 642 RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A Sbjct: 702 MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+ F + Sbjct: 762 IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821 Query: 809 ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 R + ++PP VN F+ V + I Y L AIKGVG ++E PF L Sbjct: 822 VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLL 881 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DFC+RV S KLNRR LE+++ GALD G +R L+ L + K + + R + ++ Sbjct: 882 DFCTRVGSAKLNRRTLEAMINCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSL 941 Query: 927 FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978 F + + ++ L + R E+ LGFY SGHP D ++ +R + Sbjct: 942 FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001 Query: 979 --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 I LA VV ++ KG ++ + E + Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057 Query: 1031 FF 1032 F Sbjct: 1058 AF 1059 >gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314] Length = 1188 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 321/1072 (29%), Positives = 526/1072 (49%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ YS+L+G ++ + D++ Q PA+ ITD N++ + F +K Sbjct: 1 MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + +L A G + L Sbjct: 61 AGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + S+++++ LP + TN+ ++ E +AH+ ++ Sbjct: 180 QDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + +DR + Y +E + D +NT+ IA R ++ Sbjct: 240 CVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ +AGLE R + Q+Y +R ++E++VI Sbjct: 300 HPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D R Q Sbjct: 415 ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPG 474 Query: 469 YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 Y DR+ K L P A + + + R DP V ++ + ++ LE Sbjct: 475 YQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ +PL + +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRGVKV--DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 T++ +++ + DL + +D ETY LL+ TLGIFQL+ GM++ L+ MQP Sbjct: 595 TVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQP 654 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691 DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ L ET G+I+Y Sbjct: 655 TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVY 714 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+I+Q ++ Y+ +AD R+AMGKK E + K+ F +G NG S +++ Sbjct: 715 QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWD 774 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K + D R Sbjct: 775 TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRH 834 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870 I+++ P +N ++F I Y L AI+ VG+ I+E F D+ Sbjct: 835 LGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLD 894 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 ++D+ N+R+ ESL+ AGA D G++R L+ ++ +K ++FA Sbjct: 895 KIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF 954 Query: 931 KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 D++ + + E+ +LG Y SGHPLD Y+ L Sbjct: 955 GAEAEDEVGGFFQIAVPD-DKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLT 1013 Query: 985 ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + G + + ++ ++ ++K GS VT + E F Sbjct: 1014 TIIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1065 >gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2] Length = 1187 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 377/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 108 VKKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I + Sbjct: 226 SPEQHFKTSDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKVGLEERLDYLYPVEKRSEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + D Sbjct: 522 KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 598 ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|227504715|ref|ZP_03934764.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940] gi|227198725|gb|EEI78773.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940] Length = 1190 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 294/1073 (27%), Positives = 515/1073 (47%), Gaps = 51/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F +K + Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSNAFYKKMTS 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + +L A G + L + Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLKNLFK 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E +H+ ++ Sbjct: 180 QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V DR + Y + + D +NT+ IA R ++ Sbjct: 240 CVQTGKTFMDPDRFKFDGTGYYIKSAAQMREIWDDMIPDGCDNTLWIAERVQDYGEIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ + GL Q ++Y +R ++E++VI Sbjct: 300 HTHDRMPIADVPEGHTPTSWLTHEVMEGL-----QDRFPGKEVPEEYVKRAEYEISVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I+Y +++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMIQYAADRWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + ++ + R+ DP V ++ E ++ LE Sbjct: 475 FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVRLMDHIPMWQRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ L+ + + ++ + + Y LL+ TLG+FQL+S GM++ L+ M Sbjct: 595 TVIGDCLENIKKNRGEEIHLEEIHADDPNVSKVYELLSRGETLGVFQLDSGGMQELLKRM 654 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 655 KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLREILDETYGLI 714 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG SK + Sbjct: 715 VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKDAMDAL 774 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + D Sbjct: 775 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 R I ++ P VN +F+ I + + AI+ VG+ I++ + + S D+ Sbjct: 835 RHLGIHVLSPDVNESVENFQAVGEDIRFGMGAIRNVGSEVVESIVKTRKEKGAYTSFSDY 894 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +++ +RV ESL+ AGA D + R L+ ++ Q +K ++FA Sbjct: 895 LDKIELTACTKRVTESLIKAGAFDSMEHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954 Query: 929 HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G ++ + E+ +LG Y SGHPLD ++ L Sbjct: 955 GFGGEEQAEVASAFAIDIPDENWDRKHELALEREMLGLYVSGHPLDGFEEALEAQTDTPL 1014 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS V + + + F Sbjct: 1015 PKILSGEVYNGQELVIGGIISGVDRRFSKRDGSPWAIVNMEDHNGAQVDILVF 1067 >gi|294501515|ref|YP_003565215.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294351452|gb|ADE71781.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1118 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 365/1011 (36%), Positives = 579/1011 (57%), Gaps = 39/1011 (3%) Query: 27 LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86 + ++ +++ AIA+TD N ++ + F + AGI+PIIG L I + + Sbjct: 19 VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPIIGLTLSILEHEESER- 77 Query: 87 NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146 +VLL +GY+ L++L S + ++ + WL + GLI Sbjct: 78 ---------AYPLVLLAENDKGYENLLKLSSLVQTKEKHG----VNKKWLHHY-SGGLIA 123 Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206 +T G +G I+ N Q A++ L FKK++ LY+++QRH + + Q+ +LA Sbjct: 124 ITPGVTGEIETLLAENKLQDAKQVLQFFKKVYSQSLYISIQRHGQDEAFINQQLTELAAE 183 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QKDRPRVTPDHYLKNRSEMVSI 263 +PLVATN +L +ED +A++ L A+ + ++ + ++Y K+ EM + Sbjct: 184 ENIPLVATNQVKYLKKEDRDAYECLAAIRDGEKLHSDEDEEVKSKSSEYYFKSPDEMEDL 243 Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323 F D +E +++IARRC + + +P++ LR GL+ Sbjct: 244 FHDQHFLIEESIKIARRCELEISLGVMSIPKYPVP----PSVTSSAYLRTLCEKGLQE-- 297 Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 + Y +RLD+ELN+I M+FS YFLIV DF+ +A ++ I GPGRGS AG Sbjct: 298 -----RFQVITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAG 352 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 S+ +YAL IT++DP++ LLFERFLNP+R+SMPD DIDF ++RD+VI+YV KYG V Sbjct: 353 SLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVTQKYGALHV 412 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503 AQIITFG+L AKAA+RDVGR + ++++ K IP P + + D ++ Sbjct: 413 AQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLKSA-LRDSRVLQDYLS 471 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 + + + I+ K+EGL RH STHAAG+VI ++PL+Q V + + D+ +TQ+ M+ + Sbjct: 472 ENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEAL 530 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQ 622 + GL+K DFLGL+ LT+L L + + + LS IPF+D +T+ LL+ T GIFQ Sbjct: 531 QDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQ 590 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682 LES GMR+ L+ ++P +EDI+A+ +LYRPGP++NI Y RK+G EK++ HP + +L Sbjct: 591 LESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDIL 650 Query: 683 KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742 + T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK + +D+++ FI G+ K G Sbjct: 651 QSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYD 710 Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802 ++A +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T + N KI Sbjct: 711 LSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKI 770 Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 ++ + ++ IQ++PPS+N F V I YSLAAIK +G + I E K F Sbjct: 771 AQYINELKRKKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRF 830 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 + L DFC+RV K +N++ LE+L+ +G D FG +R LL ++D ++A V + Sbjct: 831 EDLFDFCARVSQKAVNKKALEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG 890 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 F E FS K + R + E+ +LGFY S HP Y+ + + Sbjct: 891 ----FGAE---FSLKPKYMEKEELKIEDRLQYEKDMLGFYLSSHPASQYEALNSFYSVVS 943 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + L V+ + +T+KG ++ ++ ++ + E E FP Sbjct: 944 LHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 994 >gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum JL354] Length = 1155 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 455/1041 (43%), Positives = 634/1041 (60%), Gaps = 33/1041 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L+V S++S+LEGA+ I PAIA+ D N L+ ++ F+Q Sbjct: 1 MAFAP-FVPLRVLSAFSMLEGAIEPKAIAKLATERGFPAIAMCDRNGLYGSVPFAQACIE 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPI+G L + D + + L V G+ L LVS +L Sbjct: 60 NGVQPIVGALLGVARPD-----------SDQIDHLPLYVQDDAGWLNLCRLVSAAHLERP 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 +Q + L+ L+ T+GLI LTG S G + R A + L + LF RLY+ Sbjct: 109 LEQVPHVPLAALEGY-TDGLIALTGASEGAVTRLLAQGQGVHAARYLDRLEALFPQRLYI 167 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + E ++ LAY +LPLVATN + F Y+AHD ++ +A+S + ++ Sbjct: 168 ELARRGEPTEVAAEEALLDLAYARDLPLVATNPANFAEPHFYKAHDAMLCIANSRKLWEE 227 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DRPR Y+K+ M +F+DLPEAL NT+ IA+RC+F API Sbjct: 228 DRPRSAKAAYVKSAPMMQELFADLPEALANTLTIAQRCAFAPPQRAPI-----LPSLAGD 282 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E L A GL+ RLA Q Y +RLD+E+ +I M F GYFLIVADF Sbjct: 283 LEGEAKMLAEDARRGLDARLAIYEDLSDEERQTYYERLDYEVGIIHNMGFPGYFLIVADF 342 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK +NIPVGPGRGSGAGS+ A++LTITD+DP+R LLFERFLNP+R+SMPDFDIDFC Sbjct: 343 IKWAKDHNIPVGPGRGSGAGSLVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYG ++VAQIITFG ++A+A LRD GR L M Y QVDRLCK++PN P Sbjct: 403 ETRRGEVIRYVQEKYGADKVAQIITFGKMKARAVLRDCGRILDMSYGQVDRLCKMVPNHP 462 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P S +A+ + F+ D V L++++ +LEGL R++STHAAG+VIGDRPL++L Sbjct: 463 TDPWSLPRALNGAAEFKGEYDNDNEVRTLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAEL 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLKTL++LQK++D L +RG++ DL + Sbjct: 523 VPLYRDPRSDMPVTQFDMKVVEGAGLVKFDFLGLKTLSVLQKAVDLLKRRGIECDLGTVS 582 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y L+ T+G+FQLES GMR+ L ++P EDIIALVSLYRPGP+DNI ++ Sbjct: 583 WDDKAVYDLMQRGDTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK G E I H ++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK + Sbjct: 643 KRKAGVEPIEYPHAKLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702 Query: 723 EEMDKQKERFISGASKNGISKTIA-VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMDKQ++RFI G K + +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 703 AEMDKQRQRFIDGCKKVSDIEANEASALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKA 762 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837 HYP EF AA+M +MD EK+ F DAR+ I++ P +N +F V + Y Sbjct: 763 HYPEEFYAAAMCFDMDQSEKLAVFVDDARRNGIEVAAPDLNRSEAEFSVERTDDGYAVRY 822 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LA ++ VG I+ A F+SL+DF SR+ +N R LE+L+ AGA D Sbjct: 823 GLAGLRNVGEKAMDAIVAEREAHGWFESLDDFFSRLPKGAMNSRQLEALIAAGAFDHLEP 882 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R QL ++D + A + R++ E +F +E + + + ++ + + R E+ Sbjct: 883 NRGQLTANVDLLLAVADAAIRERSSGQEGLFGNE-DSANQGLRMKDAEDWSRAERMAKER 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESV-----ATIRGNNIRLAAMVVSKQQKKTRK 1011 GFYFS HP++ ++ + G + Y + RG + +AAMV ++ +TR+ Sbjct: 942 ETFGFYFSAHPIEQFRDVASANGARSYSSLMTGGPAGEARGRAV-IAAMVEGAKRGQTRR 1000 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G FS+ ++ A F Sbjct: 1001 GKDFIRADFSDSTGQFSAACF 1021 >gi|217962084|ref|YP_002340654.1| DNA polymerase III DnaE [Bacillus cereus AH187] gi|229141330|ref|ZP_04269868.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26] gi|217066627|gb|ACJ80877.1| DNA polymerase III, alpha subunit [Bacillus cereus AH187] gi|228642111|gb|EEK98404.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26] Length = 1108 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ N AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLENKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI IHP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|222098066|ref|YP_002532123.1| DNA polymerase iii dnae [Bacillus cereus Q1] gi|221242124|gb|ACM14834.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1108 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI IHP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|42783781|ref|NP_981028.1| DNA polymerase III DnaE [Bacillus cereus ATCC 10987] gi|42739711|gb|AAS43636.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987] Length = 1108 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 368/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFISKINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|324328496|gb|ADY23756.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1108 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 584/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ K +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEEEKP-----------YPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 TYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+ Q+ ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIMQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|91761976|ref|ZP_01263941.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717778|gb|EAS84428.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 1138 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 419/1033 (40%), Positives = 631/1033 (61%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+ EGA+ ++N+ D + P + I+DT+NL ALEF++ G QPI Sbjct: 9 FNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG Q+ +D + + L+ GY+R+IEL SR YL + Sbjct: 69 IGTQIYFRFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDALSDPH 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L I TEG+ +L+G G + F K + F D Y+ +QRH Sbjct: 116 LDVKDLL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHG 174 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + ++P++ATN +L+ + +EAHD L + T V++K+R + + Sbjct: 175 DQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYS 234 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HY K+ EM +FSDLPEALEN + +C+F Q P+LP ++ + Sbjct: 235 NQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----GSADE 290 Query: 310 ELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L+ ++ GL+ + + + Y+ RLD EL +I MK+ YFLIV+D+ Sbjct: 291 ILKKDSLDGLKEKFLKVFKVEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDY 350 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDIDFC Sbjct: 351 IKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFC 410 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +++RD V +Y+ KY + VA IITFG L+A+ +RDVGR L +PY VD + K+IP DP Sbjct: 411 EEKRDLVFKYLTTKYK-DSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDP 469 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + P S + I + R ++ DP V +L ++S KLEGL R+ +THAAG+VI DR L+++ Sbjct: 470 SRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEV 529 Query: 543 VPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D +DL + TQF+M E AGLIKFDFLGLKTLT++ ++ + ++ + Sbjct: 530 VPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFKIED 589 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I FDD + + LL++ T+G+FQ+ES+GMR+AL M+P+ IEDIIALV+LYRPGP+ NI + Sbjct: 590 IDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSNIPI 649 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ EAD+LRRAMGKK Sbjct: 650 YNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAMGKK 709 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + E++KQK+ FI+GA KNGISK +A +IF + FA+YGFNKSHAAAYA+ISYQTA++K Sbjct: 710 KRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTAFLK 769 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 T+YP EF AASMT+++ N K+ +F ++ ++ NI+++ P +N DF+ DN YY+L Sbjct: 770 TYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYYALG 829 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG ++++ + F S+ DF +RV+ K +N+ LE LV AGA D +R Sbjct: 830 GIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDNNRQ 889 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L S+ N + + +N+ ++F ++ ++ + R E + Sbjct: 890 ALFNSIPNFILKTKNIYENKAANQIDLFGSDEEQDNEIVL--NIEDWKFEDRLSREFEAI 947 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ S HPL+ +K I I Y + +AA ++ ++KT KG+ G + Sbjct: 948 GFFISDHPLNQFKEIFDDYKIVDYAQFNLDDTIKEANIAATLLKITERKTAKGNSYGVIK 1007 Query: 1020 FSEPAKEYEANFF 1032 F++ +E F Sbjct: 1008 FTDLTSVFELFIF 1020 >gi|206977128|ref|ZP_03238027.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97] gi|206744613|gb|EDZ56021.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97] Length = 1108 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 368/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|229099065|ref|ZP_04229999.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29] gi|228684293|gb|EEL38237.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29] Length = 1108 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 367/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F D Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 TYLRRACEEGLHK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVVFP 984 >gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024] gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024] Length = 1187 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 377/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D LL + G++ L E+VSR ++ Q Sbjct: 63 LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ + K +EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I + Sbjct: 226 SPEQHFKTSNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKVGLEERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + D Sbjct: 522 KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 598 ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +S +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TAW+K HYP EF+AA M+ EM N + + D R ++++PPSVN F D++ Sbjct: 761 HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820 Query: 835 -IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + E + Sbjct: 995 NRVVIV-LDDGTARIEVSC 1012 >gi|229076107|ref|ZP_04209075.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18] gi|228706970|gb|EEL59175.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18] Length = 1108 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 367/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKYGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 TYLRRVCEEGLHK-------RYGAPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVVFP 984 >gi|228935912|ref|ZP_04098722.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823680|gb|EEM69502.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1108 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|94498252|ref|ZP_01304812.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58] gi|94422254|gb|EAT07295.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58] Length = 1181 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 463/1050 (44%), Positives = 629/1050 (59%), Gaps = 36/1050 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +FV L++ SS+++LEGA+ I + A PA AITD N L+ ++ FS Sbjct: 1 MSHA-AFVPLRIFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L + Q I L A GY + LVS +L Sbjct: 60 EGVQPIIGAMLGVLRPGRPANAAQVHDW------ITLYAQDARGYDNICALVSMAHLDRP 113 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 ++ + L L E T+G+I LT G G + R F + A + LF DRLYV Sbjct: 114 VEEVPHVTLDAL-EGRTDGVIALTAGGEGALARLFAEDQPDAALAYAERLEALFPDRLYV 172 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + R + E+ ++ LAY LPLVATN + F +EAHDV++ +A S V Sbjct: 173 EICRRLDPVEGKAEAALLDLAYDRGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDTA 232 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR + +PD ++K +EM +F DLPEAL NT+ +A+RC+ + I Sbjct: 233 DRRKSSPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E LR++A GLE RL + I + Y +RL FE ++I +M F GYFLIVADF Sbjct: 288 IEGEAAMLRDQAAEGLEARLEKAGILGEEMRRPYYERLKFETDIIIQMGFPGYFLIVADF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK+ +IPVGPGRGSGAGS+ A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC Sbjct: 348 IKWAKEQDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P Sbjct: 408 ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +++ S F+ D V RL++ + KLEG RH+STHAAG+VIGDRPLSQL Sbjct: 468 TDPWTLERSLNGVSEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ L+ RGV VDL + Sbjct: 528 VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLSARGVTVDLDTLA 587 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +DD Y LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ Sbjct: 588 WDDTAVYDLLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG+E I H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK Sbjct: 648 RRKNGQEDIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707 Query: 723 EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMD Q+ RF+ A+K+ I A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K Sbjct: 708 AEMDAQRARFVEGCAAKSDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKA 767 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831 HYP EF A SM ++ EK+ F D R+ + + P +N DF V Sbjct: 768 HYPAEFYAGSMAFDIHLTEKLTVFVDDMRRMGLTCLAPDINRSEADFTVEPVAYEGEDAR 827 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + Y+L +KGVG ++E F SL+DF R++ + LNRR LESL AG Sbjct: 828 LGFAVRYALGGLKGVGEKAMEQLVEERNKGGAFKSLDDFADRIEPRLLNRRQLESLAAAG 887 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 A D R + + + I A R + +F + +D + + + Sbjct: 888 AFDGIHADRAGVHAAAETILSVASSNAAARESGQGGLFGDVETPHAD-VRIPPHQAWTVA 946 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGNNIRL-AAMVV 1002 R E+ GFYFS HP+D YK + G + Y G + + AAMV Sbjct: 947 DRMAQEKEAFGFYFSAHPVDRYKHLADARGARSYGLICQSPMPAPNAEGRAMTIMAAMVE 1006 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++T++G+R TFS+ + +++A+ F Sbjct: 1007 DVRWRETKRGARYASATFSDQSGQFQASCF 1036 >gi|311741557|ref|ZP_07715381.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|311303727|gb|EFQ79806.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 1194 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 299/1077 (27%), Positives = 519/1077 (48%), Gaps = 51/1077 (4%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F + Sbjct: 1 MMSRMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYR 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 + AG++PIIG + + + + ++ A G + Sbjct: 61 RMTGAGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLR 120 Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170 L L S Q + R+ + E +G+I TG SG + A + Sbjct: 121 NLFTLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEA 179 Query: 171 LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228 ++ ++G D ++ L H ++ ++++ +LP + TN+ ++ E AH Sbjct: 180 AAMWQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAH 239 Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQ 286 + ++ V DR + Y + + D +NT+ IA R + Sbjct: 240 EAMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGE 299 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + + + L ++ + GL+ R + ++Y +R +E++ Sbjct: 300 IWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEIS 354 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDPL LLFER Sbjct: 355 VIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFER 414 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 FLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHF 474 Query: 467 MPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515 + K IP + ++ + R+ +DP V ++ + + Sbjct: 475 GQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTA 534 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 + LEG+ R A HA +++ L +PM++ +T ++ E GL+K DFLG Sbjct: 535 RGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLG 594 Query: 576 LKTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 L+ LT++ +++ + + L + Y LL+ TLG+FQL+S GM++ Sbjct: 595 LRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQEL 654 Query: 632 LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKET 685 L+ M+P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET Sbjct: 655 LKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDET 714 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745 G+I+YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG SK+ Sbjct: 715 YGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSA 774 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 ++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + Sbjct: 775 MDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIY 834 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864 D R I+++PPSVN DF+ I + + AI+ VG+ I+++ D F S Sbjct: 835 LSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTS 894 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 D+ +++ +RV E+L+ AGA D + R L+ ++ Q +K Sbjct: 895 FSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQF 954 Query: 925 NIFAHEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 ++FA G D + + E+ +LG Y SGHPLD ++ L Sbjct: 955 DLFAGIGGGEDDAASNAFALDIPEDNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQT 1014 Query: 980 IKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS VT + + E F Sbjct: 1015 DTPLTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1071 >gi|229118095|ref|ZP_04247454.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3] gi|228665318|gb|EEL20801.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3] Length = 1108 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 367/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F D Y+ LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMCLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA+ NTV+IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 TYLRRACEEGLHK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ +K + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVVFP 984 >gi|320102869|ref|YP_004178460.1| DNA polymerase III subunit alpha [Isosphaera pallida ATCC 43644] gi|319750151|gb|ADV61911.1| DNA polymerase III, alpha subunit [Isosphaera pallida ATCC 43644] Length = 1243 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 349/950 (36%), Positives = 538/950 (56%), Gaps = 29/950 (3%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + P FVHL HS YSLL+GA + +++ + + A+A+TD NL +A+EF +++ Sbjct: 8 AMSHRP-FVHLHCHSHYSLLDGASKIPDLIARAKSLGMNALAVTDHGNLHAAMEFLRESK 66 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AA QPIIG + + G T + LL AEG++ L+ L S+ +L + Sbjct: 67 AADFQPIIGLEAYVAPGHRASKIPGGCNGQETSFHLTLLARDAEGFRNLMRLSSKAFL-E 125 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 RI L E ++GLI L+G +S + + AE+ + K+FG + Sbjct: 126 GFYYKPRIDKEIL-ERHSKGLICLSGCASSEFSDFLLHDRFEEAERLAAWYLKVFGPENF 184 Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q + + E + + LA LPLVAT+++ +L+ ED AHDVL+ + + Sbjct: 185 FIEIQNNGVAIQKECEEKSIDLARRMGLPLVATSDAHYLTREDAPAHDVLLCINTGKTFN 244 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R R T + ++++ EM +AL+ + +IA R + + Sbjct: 245 DPTRMRFETDEFFIRSPEEMYRAMPGHEDALKRSADIAARIDYSGLDLGTRRFPVFKP-- 302 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E LR GL R + +RL+ EL +I RM F+ YFLIV Sbjct: 303 -PTGQTPEEYLRALCQRGLVERYGNN------PPPEATRRLEHELEIILRMGFASYFLIV 355 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 DF+++A++ IP RGS G++ +Y L ++ +DPL + LLFERFL+P+R PD DI Sbjct: 356 WDFVRFARERGIP-NSARGSACGALVSYVLHLSHVDPLTYDLLFERFLDPNRSEAPDIDI 414 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 D CQ+RR EVI YV+NKYG E VAQI TFG+L A+A LRDVGR L +P S+VD++ KL+P Sbjct: 415 DLCQERRYEVIEYVRNKYGVENVAQIGTFGTLAARAVLRDVGRVLGIPLSKVDQVAKLVP 474 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 + QAI + R DP V R+L+ ++LEGL R+ THAAG+VI DRPL Sbjct: 475 QVLNISLD-QAIKQEPELRRLGELDPEVGRMLDYGRRLEGLVRNVGTHAAGVVIADRPLI 533 Query: 541 QLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595 +LVP+ +D ++ TQ++M +EKAGL+K DFLGL+ LT+L +++ + R + Sbjct: 534 ELVPLQKLPNKDKEKEVVTTQWDMGDVEKAGLLKMDFLGLRNLTILDRAVRLIRARHPRL 593 Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 + +P DD +T+ LL T G+FQLES+G+R L M+PD DIIA +LYRPGP Sbjct: 594 DFRIENLPLDDPDTFALLQKGETKGVFQLESAGIRDLLIKMKPDVFNDIIATNALYRPGP 653 Query: 655 ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 ++ + Y + K+G+++ HP++ +L+ET GV++YQEQVM+I L G LS A Sbjct: 654 LNGGMVDDYIDCKHGRKQPNYPHPVMREILEETHGVMVYQEQVMRILNRLGGIELSAAYQ 713 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 +A+ KK E + K K +F++GA + G++K A IF+L+ F YGFNKSH+ AYA++ Sbjct: 714 CIKAISKKKTEVIAKNKAQFVAGAVERGLAKEKAEEIFDLIEYFGGYGFNKSHSTAYALV 773 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMD--NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +YQTA++K H+P E++AA ++ E+D +K+ + +D R+ I+++PP +N+ +F V Sbjct: 774 AYQTAYLKAHFPTEYMAALLSSEIDGAERDKLVEHIEDCRRMGIEVLPPDINSGEAEFAV 833 Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 D +I +SLAAIKGVG I++ + PF + DF RV S+ + +E L+ A Sbjct: 834 VDQGKIAFSLAAIKGVGIKAVEAIVKERNERGPFAHIGDFLERVPSQVVTSSTVEILIKA 893 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 GA D G +R QLL +L + + AQ +++R N+F Sbjct: 894 GAFDHLGGNRAQLLAALPRLVQAAQTAQEDRKRGQRNLFDAIADDPPKPF 943 Score = 94.1 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 S++ E++VLGFY S HPL + ++R + ++ I L M+ S Q K Sbjct: 1004 DSLKLAEEKKVLGFYMSSHPLTRHAAMIRALASHSIDQLADVPEKTEIILGGMIASMQIK 1063 Query: 1008 ---KTRKG-SRIGWVTFSEPAKEYEANFFP 1033 K+R G +R+ +TF + A +P Sbjct: 1064 TVQKSRSGLTRMAKLTFEDLTGSMPAMLWP 1093 >gi|322379743|ref|ZP_08054053.1| DNA polymerase III subunit alpha [Helicobacter suis HS5] gi|321147814|gb|EFX42404.1| DNA polymerase III subunit alpha [Helicobacter suis HS5] Length = 1212 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 366/1056 (34%), Positives = 583/1056 (55%), Gaps = 45/1056 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + KI +++++D N+F A++F GI+PI Sbjct: 19 FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I NL G + L EGY L+ L S+ +L + R Sbjct: 79 IGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFL-EGFYYFPR 132 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L+E +GLI + G I+ A++ ++ +FG+ Sbjct: 133 INKKLLKER-CKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFGE 191 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH ++ E Q+++L+ + L+ATN++ + ++ED A ++ M VA Sbjct: 192 DFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGKT 251 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y+K+ ++M +F+D+PEALENT EIA++C + + P + Sbjct: 252 LNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPPR 311 Query: 299 ECDDIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + KE+ +KA GL+ RL I + Y +RL++E+ VI Sbjct: 312 FKFTQEYALSEGLDIKEDAPYFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKVIT 368 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERFLN Sbjct: 369 DMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFLN 428 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD D DFCQ RR E++ Y+ KYG VAQ+ITF + AK +RDV R L MPY Sbjct: 429 PERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 488 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + D + KLIPN + +A + + + + + S +LE L R A HA Sbjct: 489 KEADEMAKLIPNRLGITL-QEAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGKHA 547 Query: 530 AGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A +V+ +R L P+Y R+ VTQ++MK++E LIKFDFLGLKTLT++ +L+ Sbjct: 548 AALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALNI 607 Query: 589 LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + K+D + DD + Y + T+GIFQ+ES + + ++P EDIIA++ Sbjct: 608 IKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIAII 667 Query: 648 SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +L RPGP+++ + + NRK+G I + ++P+L+ T G IIYQEQVMQI Q ++G+ Sbjct: 668 ALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIAGF 727 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL EAD++RRAMGKK + M + +F+ GA K G A +F+L+ KFA YGFNKSH Sbjct: 728 SLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNKSH 787 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++++QTA++KTHY F+AA ++ E +++ + + ++A I+I P VN Sbjct: 788 SAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNVSD 847 Query: 826 VDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 V F+V D I + L AIKG G ++E F LED S++D K ++R Sbjct: 848 VQFRVQDQEGERVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFSKR 907 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKI 938 +LE L+ +G+LD GY+R +L++LD I + + +K+ +FA+ + + Sbjct: 908 ILEPLIKSGSLDNLGYNRRTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKAHL 967 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997 TL+ + + S + E +G YFSGHPLD +K ++ + + + + G+ Sbjct: 968 TLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQATF 1027 Query: 998 AAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 ++ ++K +K G G + + + ++ F Sbjct: 1028 IGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063 >gi|71083603|ref|YP_266322.1| DNA polymerase III subunit alpha [Candidatus Pelagibacter ubique HTCC1062] gi|71062716|gb|AAZ21719.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique HTCC1062] Length = 1138 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 419/1033 (40%), Positives = 630/1033 (60%), Gaps = 32/1033 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+ EGA+ ++N+ D + P + I+DT+NL ALEF++ G QPI Sbjct: 9 FNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQPI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG Q+ +D + + L+ GY+R+IEL SR YL + Sbjct: 69 IGTQIYFKFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDALSDPH 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L I TEG+ +L+G G + F K + F D Y+ +QRH Sbjct: 116 LDVKELL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHG 174 Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + ++P++ATN +L+ + +EAHD L + T V++K+R + + Sbjct: 175 DQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYS 234 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HY K+ EM +FSDLPEALEN + +C+F Q P+LP ++ + Sbjct: 235 NQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----GSADE 290 Query: 310 ELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 L+ ++ GL+ + + + Y+ RLD EL +I MK+ YFLIV+D+ Sbjct: 291 ILKKDSLDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDY 350 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDIDFC Sbjct: 351 IKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFC 410 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +++RD V +Y+ KY + VA IITFG L+A+ +RDVGR L +PY VD + K+IP DP Sbjct: 411 EEKRDLVFKYLTTKYK-DSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDP 469 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + P S + I + R ++ DP V +L ++S KLEGL R+ +THAAG+VI DR L+++ Sbjct: 470 SRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEV 529 Query: 543 VPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 VP+Y+D +DL + TQF+M E AGLIKFDFLGLKTLT++ ++ + ++ + Sbjct: 530 VPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFKIED 589 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I FDD + + LL++ T+G+FQ+ES+GMR+AL M+P+ IEDIIALV+LYRPGP+ NI + Sbjct: 590 IDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSNIPI 649 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ EAD+LRRAMGKK Sbjct: 650 YNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAMGKK 709 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + E++KQK+ FI+GA KNGISK +A +IF + FA+YGFNKSHAAAYA+ISYQTA++K Sbjct: 710 KRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTAFLK 769 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 T+YP EF AASMT+++ N K+ +F ++ ++ NI+++ P +N DF+ DN YY+L Sbjct: 770 TYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYYALG 829 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 IK VG ++++ + F S+ DF +RV+ K +N+ LE LV AGA D +R Sbjct: 830 GIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDNNRQ 889 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L S+ N + + +N+ ++F + ++ + R E + Sbjct: 890 ALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEIVL--NIEDWKFEDRLSREFEAI 947 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF+ S HPL+ +K I I Y + +AA ++ ++KT KG+ G + Sbjct: 948 GFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANIAATLLKITERKTAKGNSYGVIK 1007 Query: 1020 FSEPAKEYEANFF 1032 F++ +E F Sbjct: 1008 FTDLTSVFELFIF 1020 >gi|196047476|ref|ZP_03114687.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108] gi|225866581|ref|YP_002751959.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102] gi|196021691|gb|EDX60387.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108] gi|225787407|gb|ACO27624.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102] Length = 1107 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 50/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEE------------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 106 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 164 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 165 IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 281 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 334 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 512 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 572 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 632 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 692 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 752 MTALLSSAIGNEDKIMQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 918 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 919 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 976 Query: 1027 YEANFFP 1033 EA FP Sbjct: 977 MEAVLFP 983 >gi|229124170|ref|ZP_04253362.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201] gi|228659472|gb|EEL15120.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201] Length = 1108 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas europaea ATCC 19718] gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas europaea ATCC 19718] Length = 1169 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 413/1055 (39%), Positives = 605/1055 (57%), Gaps = 50/1055 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P F+HL++HS YS+++G + + + K PA+A+TD +NLF ++F Q A Sbjct: 1 MPIDPVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI GC + + +++ ++LL + GY L L+SR Y + Sbjct: 61 AGIKPIAGCDVWVTNENDADRP----------FRLLLLCQSFSGYLLLSRLLSRAYRENM 110 Query: 125 GKQSVRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + SW +E GTEGLI L+GG G +++ A + LF R Sbjct: 111 CRGRAELKKSWFREEDAGTEGLIALSGGGQGEVEQLLLA-DPPAAVTAAQQWADLFPGRF 169 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QR R + ++ LA + +LP+VAT+ F+ ED+ AH+ + +A V+ Sbjct: 170 YLEIQRCGRPNEETSGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLG 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + RP+ T Y K +EM +F D+PEAL N+VEIARRCS +L++ LP F Sbjct: 230 DRRRPKEFTGQQYFKTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + E LR A GLE RL Q + + Y+ RLDFE+ I +M F+GYF Sbjct: 290 ISV----EQHLRELAQTGLEARLLQSFPQVLQRDERRPIYQMRLDFEVETIIQMGFAGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIVADFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 346 LIVADFIGWAKQHDVPVGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L K Sbjct: 406 FDIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 465 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L+P + + + + + V LLE++++LEGL R+ HA G++I Sbjct: 466 LVPFELGMTLRKAR-EIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPG 524 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593 ++ P+Y D V+Q++ +EK GL+KFDFLGL+TLT+L +++ + Q Sbjct: 525 KITDFCPVYCADSGDAVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQYRAASP 584 Query: 594 --------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 L I +D T+ L+ T+GIFQ ES GM+ L+ +PD Sbjct: 585 GSAVAEPDVQSAEESHFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQRARPDR 644 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 ED+IALV+LYRPGP+D I + RK+GK ++ + P + P+L T G++IYQEQVMQIA Sbjct: 645 FEDLIALVALYRPGPMDLIPDFIERKHGK-RVDYLDPRLQPILGPTYGIMIYQEQVMQIA 703 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ GYSL AD+LRRAMGKK EEM +Q+ F+ GA +N +++ AV +F L+ KFA Y Sbjct: 704 QVIGGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLMEKFAGY 763 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSHAAAYA+I+YQTA++KTHYP EF+AA M+ +MD+ +K+ F +D + I I+PP Sbjct: 764 GFNKSHAAAYALIAYQTAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIVILPP 823 Query: 820 SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877 +N F D++ I Y L A+KG G I++ F L DFC RVD + + Sbjct: 824 DINESGYYFVPVDHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRRVDRRIV 883 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 NRR +E+L+ AGA D +R LL+S+ N +YA+ + ++F E Sbjct: 884 NRRTIEALIRAGAFDSVETNRAALLESVGNAMEYAEQC--SLAASQVSLF-DENTDLIQP 940 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 + + + +NE+ LGFY SGHP D Y L V + Sbjct: 941 PAITGVAQWPEREKLQNEKMALGFYLSGHPYDSYARELSCFIPVRLSRIVPGREPQ--LI 998 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A ++ + + + +R+G + VT + E + Sbjct: 999 AGVIYAIRTQMSRRGK-MAIVTLDDGLARVEVVVY 1032 >gi|9105008|gb|AAF83017.1|AE003874_1 DNA polymerase III, alpha chain [Xylella fastidiosa 9a5c] Length = 1212 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 405/1081 (37%), Positives = 618/1081 (57%), Gaps = 75/1081 (6%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDT 49 + S SFVHL +H+ +SL + + + +L + PA+A+TD Sbjct: 19 GMSTS-SFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDL 77 Query: 50 NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109 NNLF+ ++F + A GI+PI G L I ++ + LL GY Sbjct: 78 NNLFALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGY 125 Query: 110 QRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 L +L+SR +L + V + W+++ + L L G + F + +AE Sbjct: 126 LNLSQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAE 183 Query: 169 KRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 ++L ++ +FG+ L++ L R + +Q+A +P++A+N+ FL D+ A Sbjct: 184 QQLADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLA 243 Query: 228 HDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 H+ + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ ++ Sbjct: 244 HEARVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMR 303 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 + LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ Sbjct: 304 LGTYFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELD 359 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 I +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFER Sbjct: 360 TIIKMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFER 419 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L Sbjct: 420 FLNPERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLG 479 Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEG 520 PY VD + KLIPN + + + + A+ V LL ++++LE Sbjct: 480 FPYGLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLED 539 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGL 576 L R+A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL Sbjct: 540 LTRNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGL 599 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630 +TLT++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ Sbjct: 600 RTLTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRR 659 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L+ +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++ Sbjct: 660 LLKDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMV 719 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF Sbjct: 720 YQEQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIF 779 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 +L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR Sbjct: 780 DLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEAR 839 Query: 811 QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 N++++ P++N F+ + I Y L AIKGVG + I++ P+ SL +F Sbjct: 840 NLNLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNF 899 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 C+RV S KLNRR LE+++ AGALD G +R ++ L + K + + + R + +F Sbjct: 900 CTRVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFG 959 Query: 929 H-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-- 985 + + T + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 960 NADPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSA 1019 Query: 986 ----SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + RGN N LA +VVS ++ KG +V + E + Sbjct: 1020 LERILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSA 1075 Query: 1032 F 1032 F Sbjct: 1076 F 1076 >gi|301056108|ref|YP_003794319.1| DNA polymerase III subunit alpha [Bacillus anthracis CI] gi|300378277|gb|ADK07181.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis str. CI] Length = 1108 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|77747494|ref|NP_297497.2| DNA polymerase III subunit alpha [Xylella fastidiosa 9a5c] gi|14194684|sp|Q9PGU4|DPO3A_XYLFA RecName: Full=DNA polymerase III subunit alpha Length = 1193 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 404/1078 (37%), Positives = 617/1078 (57%), Gaps = 74/1078 (6%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52 + SFVHL +H+ +SL + + + +L + PA+A+TD NNL Sbjct: 2 STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61 Query: 53 FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112 F+ ++F + A GI+PI G L I ++ + LL GY L Sbjct: 62 FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGYLNL 109 Query: 113 IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 +L+SR +L + V + W+++ + L L G + F + +AE++L Sbjct: 110 SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAEQQL 167 Query: 172 LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230 ++ +FG+ L++ L R + +Q+A +P++A+N+ FL D+ AH+ Sbjct: 168 ADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227 Query: 231 LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289 + +A ++ RPR + YL++ EM ++F+D+P+AL+NT +A+RC+ +++ Sbjct: 228 RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 LP + + ++ +R ++ GLE RL + +A G +DY RL+FEL+ I Sbjct: 288 YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 +M FSGYFLIVADFIQW K+ IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLN Sbjct: 344 KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLN 403 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPDFDIDFC +RRDEVI YV KYG ERV+QIIT+G++ AKA +RDVGR L PY Sbjct: 404 PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523 VD + KLIPN + + + + A+ V LL ++++LE L R Sbjct: 464 GLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523 Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579 +A HA G+VI PL++ P++ + + PVTQF+ +E+ GL+KFDFLGL+TL Sbjct: 524 NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583 Query: 580 TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633 T++ ++ + +R + + + P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 584 TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLK 643 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +PD ED+IALVSLYRPGP+D I + RK+G ++ + P +LK+T G+++YQE Sbjct: 644 DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K G+ A IF+L+ Sbjct: 704 QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+ F +AR N Sbjct: 764 EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823 Query: 814 IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 ++++ P++N F+ + I Y L AIKGVG + I++ P+ SL +FC+R Sbjct: 824 LKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTR 883 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930 V S KLNRR LE+++ AGALD G +R ++ L + K + + + R + +F + + Sbjct: 884 VASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNAD 943 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985 T + ++ L + + E+ LG YFSGHP D Y+ ++++ Sbjct: 944 PSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003 Query: 986 -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + RGN N LA +VVS ++ KG +V + E + F Sbjct: 1004 ILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057 >gi|196032965|ref|ZP_03100378.1| DNA polymerase III, alpha subunit [Bacillus cereus W] gi|196040926|ref|ZP_03108224.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99] gi|218905831|ref|YP_002453665.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820] gi|228948329|ref|ZP_04110612.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195994394|gb|EDX58349.1| DNA polymerase III, alpha subunit [Bacillus cereus W] gi|196028380|gb|EDX66989.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99] gi|218538695|gb|ACK91093.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820] gi|228811316|gb|EEM57654.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1108 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|241761529|ref|ZP_04759616.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373837|gb|EER63370.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1174 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 458/1047 (43%), Positives = 638/1047 (60%), Gaps = 32/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L++ S +++LEGA+ +I PA I D N L+ + FS Sbjct: 1 MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L + + + + L +GY L LVS +L Sbjct: 60 DGVQPIIGSLLAVARPLRGGEASGQELKIDW---LSLYAQDEDGYNNLCALVSHAHLGRP 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + +L++ ++GL+ LTGG G + R AE L +K+F DRLY+ Sbjct: 117 LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLMAEEQQSEAEAYLTLLQKIFPDRLYI 175 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++ LAY ++PLVATN FL + + AHD ++ +A S V Sbjct: 176 ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DR +P+ ++K+ EM +F D+PEA++N++ +A+RC+ V + I Sbjct: 236 DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPV-----RKPILPSLAGD 290 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ E LR A AGLE RLA + Y +RL +ELN+I M F GYFLIVADF Sbjct: 291 REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR LLFERFLNP+R+SMPDFDIDFC Sbjct: 349 IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+ Sbjct: 409 ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + P + +A+ A + V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL Sbjct: 469 SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++ L RGV+VDL IP Sbjct: 529 VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD + LL T+G+FQLES GMR+ L ++P EDIIALV+LYRPGP+DNI + Sbjct: 589 LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RKNG E+IV HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+ Sbjct: 649 ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 EMD Q+ RF+ G+ K+ I++ A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H Sbjct: 709 SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 Y EF AA+M +M +K++ F D R+ ++ +PP +N DF V D + Y+L A+ Sbjct: 769 YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828 Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 KGVG I + + F SL+DF +R++ + LNRR LESL AGA D G R + Sbjct: 829 KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 QS + I A + + R + +F E+ I L + + + + R E+ GF Sbjct: 889 KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005 +FS HP+D Y+ +L + I+ + R I ++AAM+ + Sbjct: 948 FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +G R V S+ + ++ A+ F Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034 >gi|254524078|ref|ZP_05136133.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] gi|219721669|gb|EED40194.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] Length = 1196 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 405/1082 (37%), Positives = 603/1082 (55%), Gaps = 77/1082 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50 + S FVHL VH+ +SL + + + +L + PA+A+TD N Sbjct: 1 MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59 Query: 51 NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 NLF+ ++F + A GI+PI G + I + + LL EGY Sbjct: 60 NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107 Query: 111 RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L L++R ++ + V + WL + G L L G R ++AE+ Sbjct: 108 SLSRLLTRAWMEGHRPEGGVAVHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228 +L ++++FGD L++ L R +Q +A LP+VA+N+ FLS ++ AH Sbjct: 166 QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSNFSAH 225 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ Sbjct: 226 EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 LP + + + + ++ + GLE RL + +A G ++Y +RL+FELN Sbjct: 286 GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF Sbjct: 342 IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Sbjct: 402 LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518 PY VD + KLIPN + + + V L++++ +L Sbjct: 462 PYGLVDGVSKLIPNILGIHLKDALGKGKEGPGSEMASPELIQRYETEDDVRDLIDLALQL 521 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574 E L R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFL Sbjct: 522 EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628 GL+TLT++ ++ + +R + + IP DD TY + T +FQ ESSGM Sbjct: 582 GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R+ L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+ Sbjct: 642 RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A Sbjct: 702 MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+ F + Sbjct: 762 IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821 Query: 809 ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 R + ++PP VN F+ V + I Y L AIKGVG +++ + L Sbjct: 822 VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGEYKDLL 881 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DFC+RV S KLNRR LE+++ GALD G++R L+ L + K + + R + ++ Sbjct: 882 DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSL 941 Query: 927 FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978 F + + ++ L + R E+ LGFY SGHP D ++ +R + Sbjct: 942 FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001 Query: 979 --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 I + LA VV ++ KG ++ + E + Sbjct: 1002 VEKIWSANSGGGSGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057 Query: 1031 FF 1032 F Sbjct: 1058 AF 1059 >gi|30264675|ref|NP_847052.1| DNA polymerase III DnaE [Bacillus anthracis str. Ames] gi|47530144|ref|YP_021493.1| DNA polymerase III DnaE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187493|ref|YP_030746.1| DNA polymerase III DnaE [Bacillus anthracis str. Sterne] gi|65321971|ref|ZP_00394930.1| COG0587: DNA polymerase III, alpha subunit [Bacillus anthracis str. A2012] gi|165869605|ref|ZP_02214263.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488] gi|167634005|ref|ZP_02392328.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442] gi|167638118|ref|ZP_02396396.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193] gi|170685920|ref|ZP_02877143.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465] gi|170705551|ref|ZP_02896015.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389] gi|177651072|ref|ZP_02933903.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174] gi|190569023|ref|ZP_03021923.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I] gi|227817389|ref|YP_002817398.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684] gi|229600791|ref|YP_002868883.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248] gi|254687412|ref|ZP_05151268.1| DNA polymerase III DnaE [Bacillus anthracis str. CNEVA-9066] gi|254724975|ref|ZP_05186758.1| DNA polymerase III DnaE [Bacillus anthracis str. A1055] gi|254736712|ref|ZP_05194418.1| DNA polymerase III DnaE [Bacillus anthracis str. Western North America USA6153] gi|254741749|ref|ZP_05199436.1| DNA polymerase III DnaE [Bacillus anthracis str. Kruger B] gi|254754653|ref|ZP_05206688.1| DNA polymerase III DnaE [Bacillus anthracis str. Vollum] gi|254757485|ref|ZP_05209512.1| DNA polymerase III DnaE [Bacillus anthracis str. Australia 94] gi|30259350|gb|AAP28538.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Ames] gi|47505292|gb|AAT33968.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49181420|gb|AAT56796.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Sterne] gi|164714434|gb|EDR19953.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488] gi|167513935|gb|EDR89303.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193] gi|167530806|gb|EDR93508.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442] gi|170129676|gb|EDS98539.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389] gi|170670384|gb|EDT21124.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465] gi|172082898|gb|EDT67960.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174] gi|190559805|gb|EDV13790.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I] gi|227004404|gb|ACP14147.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684] gi|229265199|gb|ACQ46836.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248] Length = 1108 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDAK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|322378547|ref|ZP_08052994.1| DNA polymerase III subunit alpha [Helicobacter suis HS1] gi|321149024|gb|EFX43477.1| DNA polymerase III subunit alpha [Helicobacter suis HS1] Length = 1212 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 366/1056 (34%), Positives = 583/1056 (55%), Gaps = 45/1056 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA + + KI +++++D N+F A++F GI+PI Sbjct: 19 FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I NL G + L EGY L+ L S+ +L + R Sbjct: 79 IGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFL-EGFYYFPR 132 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L+E +GLI + G I+ A++ ++ +FG+ Sbjct: 133 INKKLLKER-CKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFGE 191 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y+ + RH ++ E Q+++L+ + L+ATN++ + ++ED A ++ M VA Sbjct: 192 DFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGKT 251 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 ++ R R + + Y+K+ ++M +F+D+PEALENT EIA++C + + P + Sbjct: 252 LNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPPR 311 Query: 299 ECDDIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + KE+ +KA GL+ RL I + Y +RL++E+ VI Sbjct: 312 FKFTQEYALSEGLDIKEDAPYFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKVIT 368 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERFLN Sbjct: 369 DMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFLN 428 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R+SMPD D DFCQ RR E++ Y+ KYG VAQ+ITF + AK +RDV R L MPY Sbjct: 429 PERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 488 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + D + KLIPN + +A + + + + + S +LE L R A HA Sbjct: 489 KEADEMAKLIPNRLGITL-QEAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGKHA 547 Query: 530 AGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A +V+ +R L P+Y R+ VTQ++MK++E LIKFDFLGLKTLT++ +L+ Sbjct: 548 AALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALNI 607 Query: 589 LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + K+D + DD + Y + T+GIFQ+ES + + ++P EDIIA++ Sbjct: 608 IKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIAII 667 Query: 648 SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +L RPGP+++ + + NRK+G I + ++P+L+ T G IIYQEQVMQI Q ++G+ Sbjct: 668 ALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIAGF 727 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL EAD++RRAMGKK + M + +F+ GA K G A +F+L+ KFA YGFNKSH Sbjct: 728 SLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNKSH 787 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA++++QTA++KTHY F+AA ++ E +++ + + ++A I+I P VN Sbjct: 788 SAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNVSD 847 Query: 826 VDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880 V F+V D I + L AIKG G ++E F LED S++D K ++R Sbjct: 848 VQFRVQDENGEKVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFSKR 907 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKI 938 +LE L+ +G+LD GY+R +L++LD I + + +K+ +FA+ + + Sbjct: 908 ILEPLIKSGSLDNLGYNRKTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKAHL 967 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997 TL+ + + S + E +G YFSGHPLD +K ++ + + + + G+ Sbjct: 968 TLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQATF 1027 Query: 998 AAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 ++ ++K +K G G + + + ++ F Sbjct: 1028 IGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063 >gi|49478699|ref|YP_038648.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330255|gb|AAT60901.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1108 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +F D Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-DNFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|228967702|ref|ZP_04128721.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|228791994|gb|EEM39577.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] Length = 1108 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21] gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21] Length = 1157 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 448/1040 (43%), Positives = 618/1040 (59%), Gaps = 30/1040 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FV L+V S+YS+LEGA+ + PAIA+ D N L+ A+ F+ A Sbjct: 1 MPYKP-FVPLRVLSAYSMLEGAIDPKAMAKLAKERGFPAIAMADRNGLYGAVMFANACKA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GIQPI G L + + + + + L GY L LVS+ +L Sbjct: 60 EGIQPITGTLLGVARDEEGRTVDY----------LPLYAQDEAGYDNLCHLVSKAHLERP 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I + L E T+GLI LTG S G + R + A L + LF RLYV Sbjct: 110 LEFEPHIRMEDL-EGRTDGLIALTGASEGGVTRLLAEGQTSHATAMLDKLEALFPGRLYV 168 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + E+ ++ LAY +LPLVATN + F Y+AHD ++ +A+ST + + Sbjct: 169 ELARRGNPVEEAAEAALIDLAYERDLPLVATNPANFAEPHMYKAHDAMLCIANSTHIDNE 228 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +R + P+ Y+K M F DLPEA NT+ +A+RC++ I Sbjct: 229 ERAKSNPEAYVKTAHMMEEAFDDLPEATTNTLVVAQRCAYAPP-----YRDPILPSLAGD 283 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E L A GLE RL + Y RLD+E+ +I +M F GYFLIVADF Sbjct: 284 LEGEARMLEADARKGLEKRLEPYGEMTEEARKVYFDRLDYEVGIINQMGFPGYFLIVADF 343 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DP++ LLFERFLNP+R+SMPDFDIDFC Sbjct: 344 IKWAKDHDIPVGPGRGSGAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFC 403 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYGH+ VAQIITFG L+A+A LRD GR LQM Y VDR+CK++PN P Sbjct: 404 ETRRGEVIRYVQAKYGHDHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRICKMVPNHP 463 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ + F+ D V RL++++ KLEG R++STHAAG+VIGDRPL+QL Sbjct: 464 TDPWTLPRALNGAADFKAEYDNDNEVKRLIDLAMKLEGFPRNSSTHAAGVVIGDRPLAQL 523 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K+ D L +R + +DLS + Sbjct: 524 VPLYRDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLKKATDLLKKRDITIDLSQLE 583 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD Y L+ T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI ++ Sbjct: 584 LDDPAVYELMKAGNTVGVFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFG 643 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK G+ I H ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ Sbjct: 644 KRKAGEVPIEYPHEKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQ 703 Query: 723 EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMD Q+ERF++G +GI K A +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK Sbjct: 704 AEMDIQRERFVAGCKDVSGIEKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKA 763 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837 HYP EF AASM +M EK+ F DAR+ I + PP +N +F V + Y Sbjct: 764 HYPEEFFAASMCFDMHQSEKLTIFVDDARRQGIAVEPPCLNKSEAEFTVEQTDTGYAVRY 823 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 +LA I+ VG +I+ FDSL+D R+ +N R LE+L AGALD Sbjct: 824 ALAGIRNVGEKAMENIVAEREVSGQFDSLQDLFERIPKGSMNSRQLEALACAGALDSLEP 883 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R ++ ++ D + A ++ RT+ ++F + + + L + + R E+ Sbjct: 884 NRSKVFENADMLLAVADAADRERTSGQASMFGGDDAP-GETLRLREVEDWPRAERMARER 942 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNN--IRLAAMVVSKQQKKTRKG 1012 GFYFS HP+ +K I G + Y ++ G +AAMV + TR+G Sbjct: 943 ENFGFYFSNHPVAAWKDIASANGARTYASLMSGGAPAGGRSNAVMAAMVEKVNKGTTRRG 1002 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 FS+ ++ A F Sbjct: 1003 KPFIRADFSDATGQFSAACF 1022 >gi|47565015|ref|ZP_00236058.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241] gi|47557801|gb|EAL16126.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241] Length = 1108 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 368/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGK-FYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 TYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ + PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSEEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|229112070|ref|ZP_04241613.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15] gi|228671393|gb|EEL26694.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15] Length = 1108 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|218899758|ref|YP_002448169.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842] gi|218545476|gb|ACK97870.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842] Length = 1108 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|308448573|ref|XP_003087689.1| hypothetical protein CRE_05365 [Caenorhabditis remanei] gi|308253615|gb|EFO97567.1| hypothetical protein CRE_05365 [Caenorhabditis remanei] Length = 1015 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 390/1036 (37%), Positives = 583/1036 (56%), Gaps = 47/1036 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ +S+ E + + +++ A+D+ PA+AITD +NL +A++F K+ GI+PI Sbjct: 3 FVHLGIHTEFSITESIVRIPDLIKAAASDEMPALAITDLSNLHAAVKFYNKSLGKGIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + ++ ++ LL T +G++ L E+VSR ++ Q Sbjct: 63 FGSVIRLNDANHKA---------------TLLAMTNKGWRGLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + W+ E ++ +I+L G + + AE L + + FG+R+Y+ L R Sbjct: 108 VQKDWVLE-QSQDIIVLLG-LHSDVGEMLCAAYPEKAEPLLEQWIEKFGNRVYLALTRTG 165 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 + + V+LA + + +VA N+ F+ EDYEAH+ + +A V+ RP+ Sbjct: 166 RPLEESFNEEAVKLAAKYNIGVVAHNDVHFVRPEDYEAHEARVCIADGYVLGDSKRPKHY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ Y K +EM+ +F+D+P A+ENT++IA+RC+ L++ LP + E I Sbjct: 226 SPEQYFKTSAEMIKLFADIPSAIENTLQIAKRCTVSLRLGFHDLPDYPIPEGHTIH---- 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + + GLE + + Y +RL +EL +I +M F GYFLIV D Sbjct: 282 SYFEHLSEIGLEERLDFLYPVETRDEDWAEIRKPYDERLAYELGIINKMDFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDIDF Sbjct: 342 FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDIDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD+VI YV YG + V+QI TFG++ AK A+RDV R L Y DR+ K+IP Sbjct: 402 CIAGRDKVIDYVARHYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P ++I + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGLTLEESIEAEPQLKDIVTNPSNPDYDDAAEIWEMALKLEGITRNTGKHAGGVVIAPT 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + + V QF+ +E AGL+KFDFLGL+ LT+++ ++ + +R Sbjct: 522 KITDYSAILCEADGTGRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRIQSDK 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++S IP DD ++Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 PLNISNIPLDDPKSYAVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + + +HPL++ +L+ T G+++YQEQVMQ AQ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ+ FI GA+K I + A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKVEEMVKQRATFIEGAAKKDIDEGTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833 QTAW+K HYP EF+AA M+ EM N + I D R N+ ++PPSVN F D N Sbjct: 761 QTAWLKAHYPSEFMAAVMSSEMQNTDNIVFLIDDCRINNLVVLPPSVNMSFYQFYASDVN 820 Query: 834 RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + ++++ D PF L DFC RVD KK+N+R LE+L+ AGALD Sbjct: 821 TIIYGLGAIKGVGEQAMQSVIDSREQDGPFKDLFDFCHRVDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR ++F + + + + VR Sbjct: 881 CLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E T RG A +VV Sbjct: 939 KGEKDTLGLYLTGHPIDVYRADLKSFIPNKINELTLTRRGVTTVFAGLVVDIAFFP---- 994 Query: 1013 SRIGWVTFSEPAKEYE 1028 +R+ T + E Sbjct: 995 NRMMI-TLDDGTARIE 1009 >gi|218235458|ref|YP_002369400.1| DNA polymerase III DnaE [Bacillus cereus B4264] gi|228960872|ref|ZP_04122505.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147164|ref|ZP_04275522.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24] gi|296505075|ref|YP_003666775.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171] gi|218163415|gb|ACK63407.1| DNA polymerase III, alpha subunit [Bacillus cereus B4264] gi|228636274|gb|EEK92746.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24] gi|228798768|gb|EEM45748.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326127|gb|ADH09055.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171] Length = 1108 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|229072106|ref|ZP_04205315.1| DNA polymerase III subunit alpha [Bacillus cereus F65185] gi|228711040|gb|EEL63006.1| DNA polymerase III subunit alpha [Bacillus cereus F65185] Length = 1108 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 371/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|182413909|ref|YP_001818975.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1] gi|177841123|gb|ACB75375.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1] Length = 1271 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 375/1122 (33%), Positives = 572/1122 (50%), Gaps = 111/1122 (9%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + P+FVHL VHS YSLL+G+ ++ +L + AIA+TD NL+ A+EF + A Sbjct: 1 MPSADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAK 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A ++P+IGC+L + L+ + T+ + LL GYQ L++LVS +L Sbjct: 61 DAQVKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLK- 119 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182 R + L + GLI +G + + + + A K F ++FG + Sbjct: 120 GFYYKPRTDIETLAKY-AGGLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENY 178 Query: 183 YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ LQ H ++ ++ LA +L ++ +N+ +++ D HD ++ + + + Sbjct: 179 FIELQDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKID 238 Query: 242 QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + R R + YLK+R EM +F ++P +L NT +A C + Sbjct: 239 DEKRMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLP 298 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGY---------------------------- 332 +I+ + L++ VAGL R A Sbjct: 299 PEIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGL 358 Query: 333 -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 H ++ R+ +EL++I F YFL+V DFI WAK + +PVGPGRGSGAG + AY L Sbjct: 359 THEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLG 418 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT++DPLRF LLFERFLNP+R+S PDFDIDFC RR+EVI YV+ KYG + VA IIT+G+ Sbjct: 419 ITNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGT 478 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511 L AK +RDV R +P+++ DRL K+IP++ ++ AIA + +P ++ Sbjct: 479 LGAKMVIRDVSRVHNLPFAEADRLAKMIPDELNITLT-DAIAKSAELSSEIARNPVAKKI 537 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 ++ + LEG+ R+ HAAGI+I D+PL VP+ + QF+M + K GL+K Sbjct: 538 VDQALVLEGMVRNTGKHAAGIIITDQPLDDFVPLTL--QEGDVTVQFDMGAVTKLGLLKM 595 Query: 572 DFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLT++ ++D + + K D+ IP DD +TY +L T+G+FQLESSGM+ Sbjct: 596 DFLGLKTLTVIADAVDNVRRTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGMQS 655 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 A + + I+DI A+ +LYRPGP+ I Y K + HPL++ L+ET G+I+ Sbjct: 656 ACKQVGVSNIDDINAICALYRPGPMQFIPDYARGKKDPSTVEYPHPLLEQSLQETYGIIV 715 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG-ISKTIAVNI 749 YQEQVM+ A++++GY+L AD+LRRAMGKK E M K++ +F+ GA + I + A I Sbjct: 716 YQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDEKKANEI 775 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+LL KFA YGFNKSH+AAYA++SYQTA++K +YPV+F+AA +T E+ N EK+ F +A Sbjct: 776 FDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVSHFIAEA 835 Query: 810 RQFNIQIMPPSVNTPCVDFKVG-------------------------------------- 831 I ++ P +N F Sbjct: 836 EAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLSAAEADR 895 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I + LA IKGVG A+ I+E + F +DF +R+D + +N+RVLE LV G Sbjct: 896 AGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLEHLVKTG 955 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHE---------------- 930 A D G R L +D ++R ++FA + Sbjct: 956 AFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNGSNGHGA 1015 Query: 931 ------KGTFSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 + SD TL+ S+ R E+ +LGFY SGHPL+V+ + + Sbjct: 1016 ATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAGLTEAID 1075 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020 E + RL +V ++ ++K T Sbjct: 1076 TYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRPWASFTL 1117 >gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] Length = 1187 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 378/1039 (36%), Positives = 579/1039 (55%), Gaps = 47/1039 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +++ +S+ E + + ++++ DQ PA+A+TD +NL +A++F GI+P+ Sbjct: 3 FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D + LL + G++ L E+VSR ++ Q Sbjct: 63 LGSIIRLD---------------DAQHRVTLLAMSDIGWKSLTEIVSRGFIEGQQLSIPC 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + W+ E + +I+L G + + ++ Q A L + + FG+R+Y+ L R Sbjct: 108 VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R + + +LA + + +VA N+ F+ +ED+EAH+ + +A V++ RPR Sbjct: 166 RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRTY 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +P+ + K EM+ +FSD+P A+ENT IA+RC+ LQ+ LP + + I + Sbjct: 226 SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281 Query: 309 NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + GLE + + + Y +R+D+E+ +I +M F GYFLIV D Sbjct: 282 TYFEHLSKVGLEERLNYLYPVEKRGEDWLEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF Sbjct: 342 FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C RD VI YV YG E V+QI TFG++ AK A+RDV R L Y DR+ K++P Sbjct: 402 CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537 P AI + + ++ + D + E++ KLEG+ R+ HA G+VI Sbjct: 462 PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 ++ + D V Q++ +E AGL+KFDFLGL+ LT+++ ++ + + Sbjct: 522 KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 ++ +P DD + Y + T +FQ ES GM++ L+ +P E+IIA VSLYRPGP Sbjct: 582 QLNILNVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641 Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +D I + + +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L AD+LR Sbjct: 642 MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTLGGADLLR 700 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RAMGKK EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y Sbjct: 701 RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833 TAW+K HYP EF+AA MT EM N + + D R NI ++PPSVN F D Sbjct: 761 HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNIDVLPPSVNMSTYHFHASNDK 820 Query: 834 RIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I Y L AIKGVG + +++ P+ L DFC R+D KK+N+R LE+L+ AGALD Sbjct: 821 TIVYGLGAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C G R L+ L + A+ NR + ++F + + + + VR Sbjct: 881 CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E+ LG Y +GHP+DVY+ L+ E AT RG A +V+ Sbjct: 939 KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994 Query: 1013 SRIGWVTFSEPAKEYEANF 1031 +R+ V + +E + Sbjct: 995 NRVVIV-LDDGTARFEVSC 1012 >gi|228903122|ref|ZP_04067258.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222] gi|228856531|gb|EEN01055.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222] Length = 1108 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366] gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366] Length = 1476 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 362/1105 (32%), Positives = 559/1105 (50%), Gaps = 95/1105 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------ 60 K +FVHL H+ +S+L+ +++ +++ AA + PA+AITD N+ A F Sbjct: 257 KDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHANMMGAFHFVSQVLNHN 316 Query: 61 --------KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105 A G I+PIIGC+ + ++ K +V L Sbjct: 317 KGVEARNAAAIEKGETAEEQTIKPIIGCEFFVC------ENHEDKKRKDDGYQVVFLAKN 370 Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165 GY L ++ S Y RI + +++ E +++L+G G I + Sbjct: 371 KAGYHNLAKMSSIAYTRG-FYYIPRIDKAIVEQY-KEDILVLSGNLYGEISSKLLNMGEK 428 Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224 AE+ LL +K FGD Y+ L RH D + +V LA HE+ L+ATNN+ +++++D Sbjct: 429 QAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNNTYYINKKD 488 Query: 225 YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 AHD+L+ V + ++Y K+ EM S+F+DLPEA+ N E+ Sbjct: 489 ANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPEAISNIQEV 548 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329 + +LP+F E ++++EE+ LR+ G + Sbjct: 549 VDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKK-------R 601 Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 G D +RLDFEL I + + GYFLIV DFI A+ ++ VGPGRGS AGS AY Sbjct: 602 YGEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAYC 661 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+++ LLFERFLNPDR+SMPD DIDF + R V+ YV KYG +VAQIIT+ Sbjct: 662 LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIITY 721 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDSR 497 G++ AK++++D R L +P + +++ KLIPN + Sbjct: 722 GTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFTLDEKSLKEALRADEYEKILE 781 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 + A + LE +Q LEG R+ HA G++I ++ VP+ SDL VTQ Sbjct: 782 LKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKDSDLYVTQ 841 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616 F+ +E AGL+K DFLGLKTLTL++ ++ + R D P DD TY L Sbjct: 842 FDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTYELFQRGE 901 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T+GIFQ ES+GM++ ++ ++P D+IA+ +LYRPGP++ I + RKNG+E+I Sbjct: 902 TIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDLD 961 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 + LKET G+ +YQEQVM ++Q L+G++ EADVLR+AMGKK K+ +DK K +FI A Sbjct: 962 ACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQA 1021 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 ++ G I I++ FA Y FNKSH+ YA I+YQTA++K HYP E++AA ++ M Sbjct: 1022 AEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM 1081 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855 +++++ F ++ +Q +Q++ P VN + F V + + L+ IKGVG I+E Sbjct: 1082 SDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEKAVESIIE 1141 Query: 856 AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLD 906 + L DF R +++ +N++ ES V++GA D FGY R Q ++ Sbjct: 1142 DRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGINDKMNGIE 1201 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + KYA + N ++ ++F + L + + + E+ +G + SGH Sbjct: 1202 KVIKYANDFQNNESSSQSSLFGGSVADLILEPALPVAPEWSLIDKLKYEKDAIGIFLSGH 1261 Query: 967 PLDVYKPILRKMG-----IKGYEESVATIRGNNIRLAAMVVSKQ--------------QK 1007 PLD YK L++ + T N + A S + Q+ Sbjct: 1262 PLDNYKLELKEFCQHKVKCLSLVNKIRTGDTNE-EVLAEFESIKNRELVVGGLVVVAAQR 1320 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G G + F + E F Sbjct: 1321 MTKTGKPFGTLVFEDYDDSCELALF 1345 >gi|194365029|ref|YP_002027639.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194347833|gb|ACF50956.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 1196 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 409/1082 (37%), Positives = 606/1082 (56%), Gaps = 77/1082 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50 + S FVHL VH+ +SL + + + +L + PA+A+TD N Sbjct: 1 MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59 Query: 51 NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110 NLF+ ++F + A GI+PI G + I + + LL EGY Sbjct: 60 NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107 Query: 111 RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169 L L++R ++ + V I WL + G L L G R ++AE+ Sbjct: 108 SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165 Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228 +L ++++FGD L++ L R +Q +A LP+VA+N+ FLS D+ AH Sbjct: 166 QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPTDFSAH 225 Query: 229 DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 + + ++ V+ RPR + YLK+ EM ++F+D+P+A++NT+ +A RC+ +++ Sbjct: 226 EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285 Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 LP + + + + ++ + GLE RL + +A G ++Y +RL+FELN Sbjct: 286 GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I +M F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF Sbjct: 342 IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNP+R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L Sbjct: 402 LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461 Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518 PY VD + KLIPN + + + ++ V L++++ +L Sbjct: 462 PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASAELIQRYESEDDVRDLIDLALQL 521 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574 E L R+A HA G+VIG PLS+ P+Y + + PVTQF+ +E+ GL+KFDFL Sbjct: 522 EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628 GL+TLT++ ++ + +R + + IP DD TY + T +FQ ESSGM Sbjct: 582 GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641 Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 R+ L+ +PD ED+IALVSLYRPGP+D I +N RK+G+E+I+ P + +LK+T G+ Sbjct: 642 RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748 ++YQEQVMQ+AQ++ GYSL AD+LRRAMGKK+ EM K +E F GA+K+G+ + A Sbjct: 702 MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761 Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808 IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN EK+ F + Sbjct: 762 IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDE 821 Query: 809 ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866 R + ++PP VN F+ V + I Y L AIKGVG +++ + L Sbjct: 822 VRNLGLTVLPPKVNHSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGDYKDLL 881 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 DFC+RV S KLNRR LE+++ GALD G++R L+ L + K + + + R + ++ Sbjct: 882 DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSL 941 Query: 927 FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978 F + T + ++ L + R E+ LGFY SGHP D ++ +R + Sbjct: 942 FGGPDPSTVTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGTDLGS 1001 Query: 979 --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 I LA VV ++ KG ++ + E + Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057 Query: 1031 FF 1032 F Sbjct: 1058 AF 1059 >gi|15618576|ref|NP_224862.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae CWL029] gi|15836198|ref|NP_300722.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae J138] gi|16752374|ref|NP_444633.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae AR39] gi|33242023|ref|NP_876964.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae TW-183] gi|14194705|sp|Q9Z7N8|DPO3A_CHLPN RecName: Full=DNA polymerase III subunit alpha gi|4376966|gb|AAD18805.1| DNA Polymerase III Alpha [Chlamydophila pneumoniae CWL029] gi|7189016|gb|AAF37967.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae AR39] gi|8979038|dbj|BAA98873.1| DNA polymerase III alpha [Chlamydophila pneumoniae J138] gi|33236533|gb|AAP98621.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae TW-183] Length = 1240 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 355/1075 (33%), Positives = 569/1075 (52%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K PA+A+TD NL+ A++F ++ GIQPII Sbjct: 4 IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+ I + ++ ++LL +GY+ L L S + + RI Sbjct: 64 GCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L++ +EGLI L+G S + A S + L F+ LF D + +Q H+ Sbjct: 121 DKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLHKM 178 Query: 192 YDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + + V++ + +P VATN+ +++ D++AH+ Sbjct: 179 SEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHE 238 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V V + + ++Y K+ ++M +F D+PE + NT+E+A+ Sbjct: 239 ILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAK 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAK- 330 RC F P ++ + + E L+ A L + + +A Sbjct: 299 RCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHI 358 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 ++R+D E+ +I Y LIV D I WAK N IPVGPGRGSGAGS Sbjct: 359 AKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L M S+V+ + K IP + +A+ D + + Sbjct: 479 QIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP--DLNTTLSKALETDPDLHQLYIN 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++ LEG R+ HAAG++I L+ +P+ S + TQ++MK +E Sbjct: 537 DAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K D LGLKTLT + + G + ++ +P DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +LK Sbjct: 657 ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M++++E+F A NGI Sbjct: 717 ETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EKI Sbjct: 777 ELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKIG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K ++A+ I I+PP +N F D I +++ AIKG+G I+E P+ Sbjct: 837 KLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEERDHHGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 +S+ DF R D KK++++ +ESL+ AG DCF +R LL S++ + + +K + Sbjct: 897 ESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAASG 956 Query: 923 HENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F +++ + + + + E+ +LG Y + HP+D + L ++ Sbjct: 957 VMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSRLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033 + E G+ +R ++ K ++ + + S+ YE +P Sbjct: 1017 VVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071 >gi|228923349|ref|ZP_04086637.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836303|gb|EEM81656.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1108 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIKNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|255325317|ref|ZP_05366423.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum SK141] gi|255297882|gb|EET77193.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum SK141] Length = 1190 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 299/1073 (27%), Positives = 518/1073 (48%), Gaps = 51/1073 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ SFVHL H+ +S+L+G ++ + D++ + PA+ +TD N++ + F ++ Sbjct: 1 MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 60 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + + + + ++ A G + L Sbjct: 61 AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E +G+I TG SG + A + + Sbjct: 121 LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ +LP + TN+ ++ E AH+ ++ Sbjct: 180 QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V DR + Y + + D +NT+ IA R ++ Sbjct: 240 CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGEIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + + L ++ + GL+ R + ++Y +R +E++VI Sbjct: 300 HTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEISVIEM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDPL LLFERFLNP Sbjct: 355 KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+I Y ++G ++VAQ+ITFG+++ K A++D + Sbjct: 415 ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474 Query: 471 QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519 + K IP + ++ + R+ +DP V ++ + ++ LE Sbjct: 475 FQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R A HA +++ L +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 T++ +++ + + L + Y LL+ TLG+FQL+S GM++ L+ M Sbjct: 595 TVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654 Query: 636 QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689 +P +DI+A ++LYRPGP+ + Y +RKNG+++I IHP ++ L ET G+I Sbjct: 655 KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQ+M+I+Q ++ Y+ EAD R+AMGKK E + +Q ++F G +NG SK+ + Sbjct: 715 VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 + + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + D Sbjct: 775 WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868 R I+++PPSVN DF+ I + + AI+ VG+ I+++ D F S D+ Sbjct: 835 RHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTSFSDY 894 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928 +++ +RV E+L+ AGA D + R L+ ++ Q +K ++FA Sbjct: 895 LDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954 Query: 929 HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 G D + + E+ +LG Y SGHPLD ++ L Sbjct: 955 GIGGGEDDAASNAFALDIPEDNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTDTPL 1014 Query: 984 EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 + + G + + ++ ++ +++ GS VT + + E F Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067 >gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46] Length = 1185 Score = 683 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 314/1070 (29%), Positives = 516/1070 (48%), Gaps = 50/1070 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+G ++ + D++A PA+ +TD N+F + F ++ + Sbjct: 1 MANS-SFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMT----------NQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + + + + + +L + A+G + L Sbjct: 60 KGIKPIIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFY 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 120 LSSMASYEGQISKYPRMDAELVAER-AEGIIATTGCPSGDVQTRLRLGQFDEALQAAGMW 178 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G + ++ L H + S+++++ LP + TN+ +++ + +AH+ ++ Sbjct: 179 QDIYGKENYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAML 238 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAP 290 V ++ DR + D Y +E + D P A +NT+ IA R ++ Sbjct: 239 CVQTGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDELWEE 298 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + K + L + + GL R ++Y +R ++E+ VI Sbjct: 299 HPHDRMPKADVPEGETPTTWLHHNVMEGLRKRF-----EGREVPEEYIRRAEYEIEVIDG 353 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A++ I VGPGRGS AGS+ AYA IT+IDP+ LLFERFLNP Sbjct: 354 KGYPSYFLIVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFERFLNP 413 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468 +R S PD DIDF RRDE+IRY +++G ++VAQ++TFG+++ K AL+D R Q Sbjct: 414 ERPSAPDIDIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQFGQPG 473 Query: 469 YSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519 Y DR+ K P A + + + R+ DP V R+ E ++ LE Sbjct: 474 YQIADRITKALPPAIMAKDIPLGGIVDPEHPRYGEAAEVRQLIETDPDVARIYETARGLE 533 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R HA +V+ PL +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 534 GVVRQTGVHACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKMDFLGLRNL 593 Query: 580 TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T++ ++ + RG V L + DD + Y LL+ TLG+FQL+ GMR+ L+ MQP Sbjct: 594 TVIGDCIEHIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRELLKRMQPT 653 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI------HPLIDPMLKETQGVIIYQ 692 +DI+A ++LYRPGP+ ++ + + +L+ET G+I+YQ Sbjct: 654 GFDDIVASLALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEETHGLIVYQ 713 Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 EQ+M+I+Q L+ Y+ +AD R+AMGKK E + K+ F G +NG SK ++++ Sbjct: 714 EQIMKISQKLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKDAVQKLWDI 773 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + FA Y FNKSHAA Y ++SY TA++K +Y E++AA +T D+ K+ + D R Sbjct: 774 ILPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAIYLSDCRHL 833 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871 I+++PP VN +DF+ I + L AI+ VG I++ + F S D+ + Sbjct: 834 GIKVLPPDVNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFTSFSDYLDK 893 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +++ N+R+ ESL+ AGA D G+ R L + +K ++FA Sbjct: 894 IETLPCNKRITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQFDLFAGFG 953 Query: 932 GTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 G +I + + E+ +LG Y SGHPLD ++ L Sbjct: 954 GDEDTGSESIFEIRVPD-EKWDRKHELTLEREMLGLYVSGHPLDGFEESLAAQTDTALTT 1012 Query: 986 SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032 V I + +V S ++ + G + + E F Sbjct: 1013 VVGGEVANNTEITIGGIVSSVDRRVNKNGQPWAIIGIEDHNGARVEVMAF 1062 >gi|52140905|ref|YP_085924.1| DNA polymerase III DnaE [Bacillus cereus E33L] gi|51974374|gb|AAU15924.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 1108 Score = 683 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPVFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|229048311|ref|ZP_04193879.1| DNA polymerase III subunit alpha [Bacillus cereus AH676] gi|228723036|gb|EEL74413.1| DNA polymerase III subunit alpha [Bacillus cereus AH676] Length = 1108 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTTLLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|323356540|ref|YP_004222936.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037] gi|323272911|dbj|BAJ73056.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037] Length = 1154 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 361/1045 (34%), Positives = 544/1045 (52%), Gaps = 47/1045 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+GA + ++ + PAIA+TD N F+A EF + A AGI+PIIG + + Sbjct: 1 MLDGAARIGPMVQEAVKQGMPAIAVTDHGNTFAAYEFYKTAKDAGIKPIIGIEAYVTPGT 60 Query: 82 NLKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 + + + P + LL T EG L L S+ + + R Sbjct: 61 HRSDKTRVRWGSPEQQSDDVSGSGAYTHMTLLSETTEGMHNLFRLSSKASM-EGYYFKPR 119 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + LQ GLI TG SG + + A F+ +FG + + + H Sbjct: 120 MDRELLQTYSR-GLIATTGCPSGEVQTRLRLGQYEAARAAAAEFQDIFGKENYFAEIMDH 178 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +R S +++++ +PL+ TN+ + + D +H L+ V + + R + Sbjct: 179 GLSIERRVMSDLLKISKDLNIPLLGTNDLHYTHQHDATSHAALLCVQSGSTLDDPKRFKF 238 Query: 249 TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D +Y+K+ +EM +F D PEA +NT+ IA RC A +PRF + E Sbjct: 239 DGDGYYVKSPAEMRQVFRDNPEACDNTLLIAERCDVEFDTSANYMPRFPVPPGE----TE 294 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + + + GL+ R G R++ ++E +VI +M F GYFL+VADFI WA Sbjct: 295 GSWMIKEVENGLQDRYPGG------IPDAVRKQAEYETDVILQMGFPGYFLVVADFINWA 348 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N I VGPGRGSGAGS+ AYA+ ITD+DPL+ L+FERFLNPDR+SMPDFD+DF RR Sbjct: 349 KNNGIRVGPGRGSGAGSMVAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDFDDRRR 408 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHP 486 EVI+YV KYG ERVAQI+T+G+++AK AL+D GR L P+S D+L K +P Sbjct: 409 GEVIQYVTEKYGDERVAQIVTYGTIKAKQALKDAGRVLGFPFSMGDKLTKAMPPAVMGKD 468 Query: 487 VS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + FR DP + + + LE L R HAAG+++ P Sbjct: 469 MPLDGMFNPEHPRYKEAGEFRTLIETDPEAKTVFDTALGLENLKRQWGVHAAGVIMSSEP 528 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597 L ++P+ R + VTQF+ E GLIK DFLGL+ LT++ +LD A RG + Sbjct: 529 LIDIIPIMRREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIEANRGHPLV 588 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655 L + DD +Y LL TLG+FQL+ MR L M+PD EDI A+++LYRPGP+ Sbjct: 589 LEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMRPDNFEDISAVLALYRPGPMGV 648 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPML----KETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 ++ + Y RKN +++I IHP ++ L T G+I+YQEQVM +AQ ++GY+L +AD Sbjct: 649 NSHINYALRKNKQQEIEPIHPELEEPLADILDTTYGLIVYQEQVMAVAQRVAGYTLGQAD 708 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK K E+DKQKE F G ++ G ++++L FADY FNK+H AAY + Sbjct: 709 LLRRAMGKKKKSELDKQKEIFFGGMTERGYGDVAQQTLWKVLESFADYAFNKAHTAAYGL 768 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SY TA++K HYP E++AA +T D+ +K+ + + R+ I+++PP VN F Sbjct: 769 VSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAVYLNECRRMGIRVLPPDVNESIRFFAAV 828 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I + L A++ VG I+ A D + S DF ++V N+R +ESL+ AGA Sbjct: 829 GEDIRFGLGAVRNVGANVVDGIVAARQDAKYTSFHDFLAKVPMHVANKRTVESLIKAGAF 888 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSV 950 D G +R LL+ ++ + A ++ N F + + Sbjct: 889 DTLGSTRRALLEIHEDACEGAVSDKRREANGEVGFDFDSLWDEPQQVTKVPERPEWTKKD 948 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQK 1007 + E+ +LG Y S HPL + L K + +++ G+ + +A ++ S Q + Sbjct: 949 KLAFEREMLGLYVSDHPLAGLEVPLAKHASTSIHDLLSSEDVQDGDQVTVAGLLTSVQHR 1008 Query: 1008 KTR-KGSRIGWVTFSEPAKEYEANF 1031 + G+ G VT + E F Sbjct: 1009 VAKQSGNPYGMVTVEDFNGEVTVMF 1033 >gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814] gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814] Length = 1145 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 470/1031 (45%), Positives = 653/1031 (63%), Gaps = 25/1031 (2%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+V S+ SLL +++ + + PA+AITD NN+F ALE S+ G Sbjct: 11 DKPRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPMG 70 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 +QPII L I + N P + L GY+ ++ L ++ +L Sbjct: 71 VQPIIAITLHIYDRIN---------PAAEPTELALFAQNEAGYKNMMILTTKGFLESPSG 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L+ +EGLI TGG +G + + + A + LL + F +RLYV L Sbjct: 122 GTGVYLDDVLE--HSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVEL 179 Query: 187 QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 QRH + E +V LAY +LPLVATN + F+ ++AHD L+ +A ST VS +DR Sbjct: 180 QRHGRLTEDKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDR 239 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 P+ +P+ Y+K EM+++FSDLPEA+ENT EIARRCS+ + I Sbjct: 240 PKASPEQYMKTEEEMINLFSDLPEAIENTCEIARRCSYRP-----AWRKPILPNFTGDDG 294 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 +E EL +A GL++RL+ G + Q Y RLDFELN+I +M F GYFLIV+DFI+ Sbjct: 295 DEGEELDRQAREGLKMRLSSGIL--YEEEQVYWDRLDFELNIIRQMGFPGYFLIVSDFIK 352 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK+++IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQD Sbjct: 353 WAKEHDIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQD 412 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR EVI Y + KYG +RVA IIT+G+LQAKA +RDVGR Q+P+ QVD+L KLIP +PA+ Sbjct: 413 RRHEVIEYTKRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPAN 472 Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 P + +AI + +F++ + V L+E + +LEGLYR+A THAAG+VIGDRPL +L P Sbjct: 473 PPTLQEAIDGEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSP 532 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604 +Y+D +SD+P TQFNMKW E GL+KFDFLGLKTLT++Q++L F+ G ++ FD Sbjct: 533 LYKDPKSDIPATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHTFD 592 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D E Y LL++ TLG+FQLES+GMR L ++PDCIEDIIAL+SLYRPGP+ NI Y R Sbjct: 593 DEEAYKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKNIDTYVAR 652 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 K G+E+I +H + P+L+ET GVI+YQEQVM+IAQ+L+GYSL EAD+LRRAMGKK EE Sbjct: 653 KEGREEIDYLHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKPEE 712 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M KQK RF+ GA+K +SK A IFEL+ +FA YGFNKSHAAAYAVI+YQTA++K +P Sbjct: 713 MLKQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAKHP 772 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844 VEFLA SM+L++ N EK+ F Q+ ++ I ++ P + DF V D +IYY+L A+KG Sbjct: 773 VEFLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQKIYYALGAVKG 832 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 VG + A +KPF+ L DF RVD +++N+RV ++L G D +R + ++ Sbjct: 833 VGKEAMLDVERARNEKPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAKAFEA 892 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 + + + ++R + ++F E + L K + +S + E +GFY S Sbjct: 893 SEMLAAMSNAANRDRNSNQNSLFGDEPPM---RPKLPKAAPWSSEKILDYELSSVGFYLS 949 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRK-GSRIGWVTFSE 1022 GHPLD + I + + R + +V + +K + G + ++T S+ Sbjct: 950 GHPLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAYITLSD 1009 Query: 1023 PAKEYEANFFP 1033 P+ EYE P Sbjct: 1010 PSGEYELFVAP 1020 >gi|163942337|ref|YP_001647221.1| DNA polymerase III DnaE [Bacillus weihenstephanensis KBAB4] gi|163864534|gb|ABY45593.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1110 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 366/1027 (35%), Positives = 584/1027 (56%), Gaps = 47/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ T++ +F Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ Sbjct: 166 IQDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 TYLRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL- 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 A + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 RDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 921 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 922 TAQYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDE 979 Query: 1027 YEANFFP 1033 EA FP Sbjct: 980 MEAVIFP 986 >gi|229175312|ref|ZP_04302827.1| DNA polymerase III subunit alpha [Bacillus cereus MM3] gi|228608144|gb|EEK65451.1| DNA polymerase III subunit alpha [Bacillus cereus MM3] Length = 1108 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------EKSYPLVLLAENEMGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE+ ++ +F D Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQSMF-DNFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVP----ANETND 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A Sbjct: 282 MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++DL +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGTQIDLRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKVFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|71892068|ref|YP_277798.1| DNA polymerase III, alpha chain [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796174|gb|AAZ40925.1| DNA polymerase III, alpha chain [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 1163 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 406/1048 (38%), Positives = 617/1048 (58%), Gaps = 41/1048 (3%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL VHS YS+++G ++N ++ K A + PA+A+TD NNLF ++F A +GI+ Sbjct: 4 PRFIHLHVHSDYSMIDGLATVNKLITKAAYLKMPALALTDFNNLFGFIKFYDVAYKSGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PIIG + Q + LV+ +GY LI L+S+ Y + Sbjct: 64 PIIGADFLV----------QDLIMDNKPSKLTCLVTDKQGYYHLIMLISKAYKNKCNNVA 113 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + I WL+E +GLI+L+GG +G I R N E+ L + K F +R Y+ L R Sbjct: 114 LMIQRHWLKEY-NKGLILLSGGRNGDIGRYLLRNEKSKIEQCLYFYSKYFPNRYYLELIR 172 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 ++ ++L+ LP+VATN+ F++E+D+ AH+V +A+ T ++ + R Sbjct: 173 TGRQHEESYLQLAIELSIAKGLPVVATNDVRFINEKDFLAHEVRVAIYAGTTLNNVQQLR 232 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + ++K+ EM +FSD+PE+L N+VEIA RC+F + + + + K Sbjct: 233 KYSSQQFMKSEQEMCELFSDVPESLVNSVEIAYRCNFTIDL-----GGYFLPQFPTGCKS 287 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ L A GLE RL + Y RL EL VI M F YFLIV +F Sbjct: 288 AKDFLTTHAKKGLEERLILLFPKTKERLVQRKPYDLRLKNELQVINNMNFPSYFLIVMEF 347 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+WAK N+IPVGPGRGSGA S+ AY L IT++DPL+F LLFERFLNP+R+SMPD DIDFC Sbjct: 348 IKWAKNNDIPVGPGRGSGASSLVAYVLKITELDPLQFDLLFERFLNPERISMPDLDIDFC 407 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY+ ++R+ KLIP + Sbjct: 408 MDHRDLVIEHVSKTYGSEAVSQIITFGTMAAKAVIRDVGRVLGHPYALINRIAKLIPLES 467 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + +A + + + + D + L++++ +LEG+ R+ S HA G+VI ++ Sbjct: 468 GITLK-KAFSIEPQLKLLYENDEDITELIDMALQLEGIVRNVSKHAGGVVIAPIKITDFS 526 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598 P+Y D S P+TQF+ IE+ GLIKFDFLGL+TLT++ +L + +D+ Sbjct: 527 PLYYDNDSIHPMTQFDKDDIERIGLIKFDFLGLRTLTIINHALKMINNTRLKQGLTIIDI 586 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 I D +++H+L + T IFQLES G+++ ++ ++PDC ED+IAL++L+RPGP+ + Sbjct: 587 HSISLHDQKSFHVLQSSETTAIFQLESRGIKELIKRLKPDCFEDLIALIALFRPGPLQSG 646 Query: 659 VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + NRK+G E I H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD Sbjct: 647 MVDNFINRKHGYETISYPDAKWQHESLRPVLESTYGIILYQEQVMQIAQVLAGYTLGQAD 706 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRA+GKK E+M KQ+ F GA+KNGI T+++ IF+L+ KFA YGFNKSH+AAYA+ Sbjct: 707 ILRRAIGKKKPEDMAKQRSFFNLGAAKNGIDNTLSMKIFDLVEKFAGYGFNKSHSAAYAL 766 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQT W+KTHYP EF+AA+++ +MDN+ K+ + ++ + I PP++NT F V Sbjct: 767 ISYQTLWLKTHYPAEFMAAALSSDMDNLNKVVYLIGECQKMKLIISPPNINTSQYHFYVN 826 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y AIKG+G T+ I+ + F L DFC R+DS K+N R++E L+ +G Sbjct: 827 ANKEIVYGFGAIKGIGKTSIESIITSRNKGGNFKELFDFCIRIDSTKINHRMIEKLILSG 886 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946 A D FG R +L+ SL+++ K A KN+ +K +IF E T + + Sbjct: 887 ACDSFGIHRSKLMASLNDVLKRANQHIKNKYSKQTDIFEMRLDESNTIAISDRDDNTPQW 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVVSK 1004 ++ + E E+ LG Y + HP Y +++ I ++ + + + ++VS Sbjct: 947 SNQLLLEKEKEALGLYLTSHPTIQYIKTIKRCASNIVNIKDVLLETDNKILHIFGLIVSI 1006 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K ++KG R+ + + + E F Sbjct: 1007 RTKLSKKGKRVVFFILEDYSGRLEIMIF 1034 >gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans DSM 12444] gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans DSM 12444] Length = 1215 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 449/1066 (42%), Positives = 649/1066 (60%), Gaps = 40/1066 (3%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ + +FV L++ SSY++L+GA+ I A PA AITD N L+ ++ +++ Sbjct: 19 HMPHA-AFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACK 77 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G+QP+IG L + + PT+ + L A GY L LVSR +L Sbjct: 78 DMGVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDR 137 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + L+ L T+GLI LT S G + + AE + +LF +RLY Sbjct: 138 PLEFAPHVVLADLV-GHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLY 196 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + + R+ + E+ ++ LAY +LPLVATN + F Y+AHD ++ +A ST V Sbjct: 197 IEIARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDS 256 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DRPR + + ++K + M +F DLPEAL NT+ +A+RC+ + PILP + + Sbjct: 257 ADRPRSSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGE 316 Query: 303 IQKEEEN--------------ELRNKAVAGLEVRLAQGAIAKGYHAQ-----------DY 337 + E+ E + +A + H Q DY Sbjct: 317 ARMCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDY 376 Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397 R+RL+FE+ +I RM F GYFLIVADFI+WAK++ IPVGPGRGSGAGS+ A+ALTITD+DP Sbjct: 377 RKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDP 436 Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457 ++ LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A Sbjct: 437 IKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAV 496 Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQ 516 LRD GR LQM Y Q DRLCK++PN P P +A+ + + DP V RL++++ Sbjct: 497 LRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAM 556 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGL Sbjct: 557 QLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGL 616 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 KTL++L+K++D + +R +++DLS +P+DD +TY LL + T+G+FQLES GMR+ L ++ Sbjct: 617 KTLSVLRKAVDLMKKRSIEIDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRTLAAVK 676 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 P DIIALVSLYRPGP+DNI ++ RKNG E I H + +L ET G+ +YQEQVM Sbjct: 677 PTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHDKLAGILSETYGIFVYQEQVM 736 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAK 755 Q AQ+L+GYSL +AD+LRRAMGKK++ EMD Q++RF+ G + +GI A +F+L+ K Sbjct: 737 QAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPAAKANELFDLIDK 796 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M +M EK+ F D R+ + Sbjct: 797 FAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLSVFVDDMRRNGVA 856 Query: 816 IMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870 + P +N +F V + Y+LA ++ VG I+E A+ PF SL+D Sbjct: 857 LAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREANGPFASLDDLFR 916 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 R+ + +NRR LE+L GALDC +R Q++ + + + A+ ++RT+ +F + Sbjct: 917 RIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRSRTSGQGGLFGGD 976 Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989 + L + + + E+ GFYF+ HP++ Y+ + G + Y + + Sbjct: 977 -DHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANGARSYGSLMTSS 1035 Query: 990 -IRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G +AA+V + Q++KT+KG FS+ + + A+ F Sbjct: 1036 GEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081 >gi|269302450|gb|ACZ32550.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae LPCoLN] Length = 1240 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 354/1075 (32%), Positives = 569/1075 (52%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K PA+A+TD NL+ A++F ++ GIQPII Sbjct: 4 IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+ I + ++ ++LL +GY+ L L S + + RI Sbjct: 64 GCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L++ +EGLI L+G S + A S + L F+ LF D + +Q H+ Sbjct: 121 DKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLHKM 178 Query: 192 YDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + + V++ + +P VATN+ +++ D++AH+ Sbjct: 179 SEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHE 238 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V V + + ++Y K+ ++M +F D+PE + NT+E+A+ Sbjct: 239 ILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAK 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAK- 330 RC F P ++ + + E L+ A L + + +A Sbjct: 299 RCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHI 358 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 ++R+D E+ +I Y LIV D I WAK N IPVGPGRGSGAGS Sbjct: 359 AKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L M S+V+ + K IP + +A+ D + + Sbjct: 479 QIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP--DLNTTLSKALETDPDLHQLYIN 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++ LEG R+ HAAG++I L+ +P+ S + TQ++MK +E Sbjct: 537 DAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K D LGLKTLT + + G + ++ +P DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +LK Sbjct: 657 ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M++++E+F A NGI Sbjct: 717 ETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGIDP 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 ELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K ++A+ I I+PP +N F D I +++ AIKG+G I+E P+ Sbjct: 837 KLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGHGLIESIVEERDHHGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 +S+ DF R D KK++++ +ESL+ AG DCF +R LL S++ + + +K + Sbjct: 897 ESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAASG 956 Query: 923 HENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F +++ + + + + E+ +LG Y + HP+D + L ++ Sbjct: 957 VMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSRLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033 + E G+ +R ++ K ++ + + S+ YE +P Sbjct: 1017 VVLSGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071 >gi|282891879|ref|ZP_06300358.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498139|gb|EFB40479.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1241 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 372/1071 (34%), Positives = 579/1071 (54%), Gaps = 66/1071 (6%) Query: 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 ++ + S+N I +K A + PA+A+TD N++ A+EF + A ++PI+GC++ + + Sbjct: 1 MDASASINLIAEKAAEFKMPAVALTDHGNMYGAVEFFKACQGAQVKPILGCEVYVAPESR 60 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142 L G + LL + EGY+ L +L S +L + RI L++ E Sbjct: 61 LDRKKIGNRSD---FHLTLLAKSMEGYKNLCKLSSIGFL-EGFYYHPRIDHEVLEKY-KE 115 Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE----- 197 GLI L+G S + + + K L +K LFG+ Y+ +QRH + + Sbjct: 116 GLICLSGCLSSRLSSEILQGTPESIRKHLAWYKDLFGEDYYLEVQRHTMSEENIQRDGLY 175 Query: 198 --------------------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 +V+L+ +PLVATN+S ++ ED+ H++L+ V Sbjct: 176 QETWLLQNYQEYIEKQTKVTQALVELSQEFGIPLVATNDSHYIEREDWREHEILLNVQSG 235 Query: 238 TV----------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281 ++ K R + + Y K+ ++M +F DLP+AL +T+EIA +C Sbjct: 236 EPCEILEKDAMGNPKFRQLNPKRRVYSSHECYFKSPTQMQEVFKDLPQALASTLEIAEKC 295 Query: 282 SFILQVHAPILPRFIEKECDDIQKEEEN-------ELRNKAVAGLEVRLA-------QGA 327 L P ++ + +E L + G++ R Q Sbjct: 296 HVQLDFKTKHYPVYVPPFLEGQSYTKEERAQAVEKYLWDLCEEGIKKRYDADKLAKIQEL 355 Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387 Q R+RL++E+ +I + S Y LIV DFI WAK+N IPVGPGRGSGAGS+ Sbjct: 356 FPDKDPTQIVRERLEYEMGIIVPKEMSDYLLIVWDFINWAKRNQIPVGPGRGSGAGSIVL 415 Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447 Y + +TDI+PLRF L FERF+NP+R+S PD D+D C DRR +VI+Y KYG + VAQII Sbjct: 416 YLIGVTDIEPLRFHLFFERFINPERLSYPDIDVDICMDRRGDVIQYTLEKYGKDNVAQII 475 Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507 TFG+++A+ A++DVGR L +P S+V+ + KL+P D + + D R D Sbjct: 476 TFGTMKARMAIKDVGRVLSVPLSKVNEIAKLVPEDLNITLEKA-LEKDPDLRAMYETDED 534 Query: 508 VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 R+++I +KLEG R HAAGI+I PLS ++P+ SD+P TQ++MK +E G Sbjct: 535 AKRIIDIGKKLEGSIRSTGIHAAGIIISGAPLSSIIPICNAKDSDMPATQYSMKPVEMVG 594 Query: 568 LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 ++K DFLGLKTLT +Q+ + + G +D +P DD T+ LL TLG+FQLES+ Sbjct: 595 MLKVDFLGLKTLTAIQQCVASVNVSTGKLIDWVNLPLDDVRTFDLLNQGKTLGVFQLESA 654 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM+ + D E+IIA+ +LYRPGP+D I + NRK+G+E I + HP + +L ET Sbjct: 655 GMQDLARQLHLDKFEEIIAVGALYRPGPMDMIPSFINRKHGREPIENDHPWMKDILAETY 714 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+++YQEQVMQIA L+ YSL E DVLRRAMGKK +M +Q+E+F GA +N I +T + Sbjct: 715 GIMVYQEQVMQIASKLARYSLGEGDVLRRAMGKKDMAQMAQQREKFRLGALENEIEETTS 774 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 + +F+ + KFA YGFNKSHAAAY +SY TA++K ++P E++A+ MT + D++ K+ KF Sbjct: 775 MLVFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANHPREWMASLMTCDSDDLSKVAKFI 834 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 ++A+ I I+PP +N F I +++ IKGVG I++ PF Sbjct: 835 REAQTMGIAILPPDINEAGSTFIATPQGIRFAMKGIKGVGEGVVEAIVQERNRSGPFTHF 894 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 F R+D KK+ ++ +E+LV AG+ D G+SR L QS+D + + A ++ + Sbjct: 895 YQFFKRIDLKKVGKKSIENLVDAGSFDFTGWSRDALRQSIDPMYETALKEKREEQSGVLT 954 Query: 926 IFAHEKGTFSDKITLEK--FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 F T K + + + E+ +LGF+ +GHPLD ++ ++++ + Sbjct: 955 FFDLMGATSEAKFSFAPNVLNPTSKQNILLKEKELLGFFLTGHPLDSFQEYMQRLSCVNF 1014 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033 R A ++ S Q + + K + + S+ + YE +P Sbjct: 1015 SAIDMLGNDAVFRSAVIIESVQLRLSAKTQKKFAILRISDGIESYELPIWP 1065 >gi|229163596|ref|ZP_04291545.1| DNA polymerase III subunit alpha [Bacillus cereus R309803] gi|228619846|gb|EEK76723.1| DNA polymerase III subunit alpha [Bacillus cereus R309803] Length = 1105 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 365/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ T++ +FGD Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARTYQNMFGD-FYISLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFINKVNIPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS EA+ NT +IA RC + H LP++ + + Sbjct: 225 QYYLKSSDEMGALFSQAEEAIYNTAKIAERCHVEIPFHVNQLPKYPVP----SSETNDTY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR G+ G + + QRL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGMRK-------RYGAPKEVHIQRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ + + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSIAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKQIDIRKLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G KNG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLKNGYEETSANKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLGKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|206969546|ref|ZP_03230500.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134] gi|206735234|gb|EDZ52402.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134] Length = 1108 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 368/1027 (35%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PE ++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEVIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + +L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKSILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1191 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 415/1078 (38%), Positives = 600/1078 (55%), Gaps = 78/1078 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNLFS 54 FVHL VH+ YSL + + + +L + PA+A+TD NNLF+ Sbjct: 2 SGFVHLHVHTEYSLADSIIRVPEKPDQADPAKAKRPNLLSRAVELGLPALAVTDLNNLFA 61 Query: 55 ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 ++F + A GI+P+ G L I +P + LV GY L Sbjct: 62 LIKFYKACEAVGIKPVAGADLMIA-----------SSPGEAPWRMTALVRDHGGYLNLSR 110 Query: 115 LVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L++R ++ + V + W++E G+ GLI+L G R N +A++ L Sbjct: 111 LLTRAWMEGHRQEGGVAVRPEWVRECGS-GLILL-AGRESLAGRLASENRHDLAQQHLAD 168 Query: 174 FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 +++ F L + L R R + S + A +P+VA+N+ FL ++AH+ + Sbjct: 169 WQRDFDGNLCLELTRTRRDGEEAFNSFALHAAAERGIPVVASNDVRFLDRAGFDAHEARV 228 Query: 233 AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 +A V+ RPR +P+ YLK+ EM ++F+D+P+A+ NTVE+ARRC+ L + Sbjct: 229 CIASGRVLDDPKRPRDYSPEQYLKSPEEMAALFADIPDAISNTVELARRCNLELTLGKYA 288 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 LP + + ++ +R ++ AG+E RLA+ +A G +DY RLDFEL+ I +M Sbjct: 289 LPDYPVP----SDETLDSWIRKESYAGIEERLAKNPLAPGKTREDYFARLDFELDTIIKM 344 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 F GYFLIVADFIQW K IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+ Sbjct: 345 GFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPE 404 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R+SMPDFDIDFC DRRDEVI YV KYG ERV+QIIT+G++ AKA +RD GR L PY Sbjct: 405 RVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDTGRVLGFPYGF 464 Query: 472 VDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYRHA 525 VD + KL+PN + + + ++ V L++++++LE L R+A Sbjct: 465 VDGVAKLVPNILGITLKDAMGEGKDSEMASAELIQRYGSEDDVRDLIDLARQLEDLTRNA 524 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 HA G+VI PL P++ + D PVTQF+ +E+ GL+KFDFLGL+TLT+ Sbjct: 525 GKHAGGVVIAPTPLHTFCPLFAEHDHDGLGRNPVTQFDKNDVEEVGLVKFDFLGLRTLTI 584 Query: 582 LQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGM 635 + ++ + +R + + +P DD TY + + T +FQ ESSGMR+ L+ Sbjct: 585 IDWAVKAINRRHERAGIPPLDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLKDA 644 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +PD ED+IALVSLYRPGP+D I +N RK+G+++IV P + +L +T G+++YQEQV Sbjct: 645 RPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILADTYGIMVYQEQV 704 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 MQ+AQ++ GYSL AD+LRRAMGKKI EM K +E F GA++ G+ + A IF+L+ K Sbjct: 705 MQMAQIVGGYSLGGADLLRRAMGKKIPAEMAKHREMFREGAARGGVDEKKADEIFDLMEK 764 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+M+ +MDN +K+ F +AR + Sbjct: 765 FAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATMSSDMDNTDKVVGFLVEARNLGLA 824 Query: 816 IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873 I+PP+VN F+ V + I Y L AIKGVG I+ A + L DFC RVD Sbjct: 825 ILPPTVNDSPYMFEAVTADTIRYGLGAIKGVGRGLCEAIVAEREAGGDYRDLLDFCRRVD 884 Query: 874 SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933 S KLNRR LE++V AGALD G +R L+ L + K + K ++F Sbjct: 885 STKLNRRALEAMVNAGALDALGRNRATLMLQLPEVLKATDQMAKEAAAGQTSLFGMPSAD 944 Query: 934 FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 ++ L + + + E+ LG Y SGHP D Y+ +R + + Sbjct: 945 AGPSMQLDLPECAEWPLRQVLDGERETLGHYLSGHPFDPYREDVRGLVGSDLGDLEKL-- 1002 Query: 992 GNNIRLAAMVVSKQQKKT-----------------RKGSRIGWVTFSEPAKEYEANFF 1032 A +K++ RKG +V + E F Sbjct: 1003 ----WAAGT-SGANEKRSWRPEVQVVVAGLVVGLRRKGDSQVFVQLEDGRGRLECGVF 1055 >gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC 13032] Length = 1194 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 318/1073 (29%), Positives = 521/1073 (48%), Gaps = 51/1073 (4%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 6 HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113 GI+PIIG + + + K + +L G + L Sbjct: 66 EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 126 YLSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ ++G D ++ L H + S+++++ LP + TN+ ++ E +AH+ + Sbjct: 185 WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHA 289 + V + +DR + Y +E + D +NT+ IA R ++ Sbjct: 245 LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + L ++ +AGLE + +DY +R ++E++VI Sbjct: 305 EHSHDRMPIADVPEGYTPTTWLHHEVMAGLE-----DRFSGQQVPEDYIERAEYEISVID 359 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLN Sbjct: 360 MKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D R Sbjct: 420 PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479 Query: 470 SQVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKL 518 + +L P A + L I D RF R+ DP V R+ + ++ L Sbjct: 480 GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EG+ R + HA +++ PL +PM++ +T ++ E GL+K DFLGL+ Sbjct: 540 EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599 Query: 579 LTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +++ + L L +D ETY LL TLG+FQL+ GM++ L+ MQ Sbjct: 600 LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVII 690 P DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ +L ET G+I+ Sbjct: 660 PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG S ++ Sbjct: 720 YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K + D R Sbjct: 780 DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869 I+++ P +N ++F I Y L AI+ VG I++ + F D+ Sbjct: 840 HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++D+ N+R+ ESL+ GA D G++R L+ ++ +K ++FA Sbjct: 900 DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959 Query: 930 EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 +D + T+ + E+ +LG Y SGHPLD Y+ + Sbjct: 960 FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 V G + + ++ ++ ++K GS VT + E F Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071 >gi|228987852|ref|ZP_04147961.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771900|gb|EEM20357.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1105 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETNDTY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 1188 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 318/1072 (29%), Positives = 520/1072 (48%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 1 MAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTE 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114 GI+PIIG + + + K + +L G + L Sbjct: 61 MGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFY 120 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 121 LSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H + S+++++ LP + TN+ ++ E +AH+ ++ Sbjct: 180 QDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290 V + +DR + Y +E + D +NT+ IA R ++ Sbjct: 240 CVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWEE 299 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 + L ++ +AGLE + +DY +R ++E++VI Sbjct: 300 HSHDRMPIADVPEGYTPTTWLHHEVMAGLE-----DRFSGQQVPEDYIERAEYEISVIDM 354 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLNP Sbjct: 355 KGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D R Sbjct: 415 ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPG 474 Query: 471 QVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKLE 519 + +L P A + L I D RF R+ DP V R+ + ++ LE Sbjct: 475 YQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLE 534 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 G+ R + HA +++ PL +PM++ +T ++ E GL+K DFLGL+ L Sbjct: 535 GVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594 Query: 580 TLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 T++ +++ + L L +D ETY LL TLG+FQL+ GM++ L+ MQP Sbjct: 595 TVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQP 654 Query: 638 DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691 DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ +L ET G+I+Y Sbjct: 655 TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVY 714 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG S +++ Sbjct: 715 QEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWD 774 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K + D R Sbjct: 775 TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRH 834 Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870 I+++ P +N ++F I Y L AI+ VG I++ + F D+ Sbjct: 835 LGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLD 894 Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930 ++D+ N+R+ ESL+ GA D G++R L+ ++ +K ++FA Sbjct: 895 KIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAF 954 Query: 931 KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 +D + T+ + E+ +LG Y SGHPLD Y+ + Sbjct: 955 DSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALT 1013 Query: 985 ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 V G + + ++ ++ ++K GS VT + E F Sbjct: 1014 TIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1065 >gi|172040866|ref|YP_001800580.1| DNA polymerase III subunit alpha [Corynebacterium urealyticum DSM 7109] gi|171852170|emb|CAQ05146.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM 7109] Length = 1188 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 312/1072 (29%), Positives = 522/1072 (48%), Gaps = 51/1072 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S SFVHL H+ YS+L+G ++ + ++++ PA+ +TD N+F A F + A Sbjct: 1 MSRS-SFVHLHNHTEYSMLDGMAKVDMLAEEVSRQGMPAVGMTDHGNMFGADAFYRTMTA 59 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AGI+PIIG + + + + +L A G + L Sbjct: 60 AGIKPIIGIEAYMAPDSRFNMNRVRWGNPEQKKDDVSASGAYLHQTMLAENATGLRNLFY 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + E EG+I TG SG + A + + Sbjct: 120 LSSMASYEGQLGKWPRMDAELIAE-HAEGVIATTGCPSGDVQTRLRLGQFNEALEAAAMW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ +++++ +LP + TN+ ++ E AH+V++ Sbjct: 179 QDIYGKDNFFLELMDHGLEIEKRVRDELMEIGRKLDLPPLVTNDCHYVLENQAAAHEVML 238 Query: 233 AVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFI 284 V + + + R + Y +E + D +NT+ IA R Sbjct: 239 CVQTGSTMDEPTIDEGGKRFAFSGSSYYIRTAEDIRNQWDHVVPDGCDNTLWIAERVQDY 298 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 ++ + + L ++ GLE R G + Q+Y R ++E Sbjct: 299 GEIWEEHPYDRMPVAEVPEGHTPTSWLTHEVNRGLEERFNGGPV-----PQEYLDRAEYE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI + YFLIVA+ I++A+ I VGPGRGS AG++ AYALTIT+IDP+ LLF Sbjct: 354 ISVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D RA Sbjct: 414 ERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARA 473 Query: 465 LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513 + K I A+ + R+ DP V+++ E Sbjct: 474 WYGQAGFQMADRITKALPPAIMAKDIELKGIKDPEHPRYAEAAEVRQLIDTDPQVNKIYE 533 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + LEG+ R A HA +++ PL +PM++ + +T + E GL+K DF Sbjct: 534 DALGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593 Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ ++D + + RG DL + +D TY LL TLG+FQL+S GM++ L Sbjct: 594 LGLRNLTVIGDAIDNIKKNRGEDFDLEGLATEDAATYELLARGDTLGVFQLDSGGMQELL 653 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPM----LKETQ 686 + MQP DI+A ++LYRPGP+ + +RKNG++ I IHP ++ L+ET Sbjct: 654 KRMQPTGFNDIVAALALYRPGPMGVKAHWEYADRKNGRKPITPIHPELEEPLKEILEETY 713 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK +E +D++ E F G NG SK Sbjct: 714 GLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKREVLDQEYETFSGGMIDNGYSKDAI 773 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 ++ + FADY FNKSHAA Y ++S+ TA++K +Y E++AA +T + +K + Sbjct: 774 DTLWNTILPFADYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSNQKDKSAIYL 833 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 D R I+++ P VN F+ I + L A++ VG I+ + + F Sbjct: 834 SDCRHLGIKVLSPDVNESAFTFQSVGEDIRFGLGAVRNVGEDVVESIIASREEKGDFKDF 893 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ ++D+ ++RV ESL+ AGA D G+ R L+ ++ +K + Sbjct: 894 SDYLDKIDAVAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVVATKKAAAKGQFD 953 Query: 926 IFAHEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 +FA + + + E+ +LG Y SGHPLD ++ L Sbjct: 954 LFAGLGAEEAGDVFKVEVPDQEWERKHELALERDMLGLYVSGHPLDGFEDALDAQIDTPL 1013 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032 + ++++ ++ S +++ R G+ T + + E F Sbjct: 1014 PTVLSGELPNNKDVKIGGIISSVERRVDRNGAPWVIATLEDQHGAQVELLVF 1065 >gi|75760293|ref|ZP_00740343.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492203|gb|EAO55369.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1108 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 368/1027 (35%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D F SR L +S+ Sbjct: 813 ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFXVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|258648347|ref|ZP_05735816.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC 51259] gi|260851512|gb|EEX71381.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC 51259] Length = 1256 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 356/1138 (31%), Positives = 565/1138 (49%), Gaps = 126/1138 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65 FVHL VHS YS+L+G S+ N+L K AD +A+TD N+ EF +A A Sbjct: 3 DFVHLHVHSQYSILDGQASIGNLLKKAVADGMQGMALTDHGNMMGVKEFYNEAKKAIGKA 62 Query: 66 ------------------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 +PI+GC++ + + ++ + +++ Sbjct: 63 KESLKKAQEEGGSEEQIAKLQRAAAFKPILGCEMYVA---RRTLKDKKDKTDQSGHHLIV 119 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L + GY LI+LVS+ + +D R L + EGLI+ + G I Sbjct: 120 LAKNSVGYHNLIKLVSKAW-VDGFYMRPRTDHEELAKY-REGLIVCSACLGGEIPSNILK 177 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------------RYRESQVVQLAYTHE 208 + A++ FK +FGD Y+ LQRH D ++QLA + Sbjct: 178 DDIDKAKEAARWFKSIFGDDYYLELQRHEVKDPSIQANREVYGLQTKVNEVLIQLAKELD 237 Query: 209 LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268 + L+ +N+ F++EED EAHD L+ ++ + R T + K + EM IF D+P Sbjct: 238 IKLICSNDVHFVNEEDGEAHDRLICLSTGKDLDDPKRLLYTKQEWFKTQREMNKIFEDIP 297 Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---------------------- 306 EA+ NT+EI + HAPI+P F E ++E Sbjct: 298 EAMRNTIEICNKVELYSIDHAPIMPNFPIPESFGTEEEYRSRLTEEDLFNEFTRDENGKE 357 Query: 307 -------------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341 E + L A G + R + + + ++R+ Sbjct: 358 IVSREEGLKKIEKLGGFNRLYRIKFEADYLAKLAYDGAKRRYGEPL------SDEVKERV 411 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 +FEL+++ M F GYFLIV D+I A+ + VGPGRGS AGS AY L IT IDP+++ Sbjct: 412 NFELHIMKVMGFPGYFLIVQDYINTARNELGVSVGPGRGSAAGSAVAYCLGITQIDPIKY 471 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNPDR+S+PD D+DF D R V+++V +KYG E A IIT+G++ K+A++D Sbjct: 472 DLLFERFLNPDRISLPDIDVDFDDDGRGRVLQWVTDKYGAENCAHIITYGTMATKSAIKD 531 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVS--------LQAIADDSRFREARL-ADPSVDRL 511 V R ++P S+ +RLCKLIP+ S AIA REA +P + Sbjct: 532 VARVERLPLSESNRLCKLIPDKLPEDSSGKSPKLTLDNAIAAIPGLREAEASDNPLLRDT 591 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAG 567 + +++LEG R+ HA G +I +S VP+ + TQ+ + IE+ G Sbjct: 592 IRYARQLEGNVRNTGVHACGFIICKDKISDWVPISTADDKETGEKLRCTQYEGRVIEETG 651 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 LIK DFLGLK L++++++L+ + G+ +D+ I D TY L + T+G FQ ES+ Sbjct: 652 LIKMDFLGLKNLSIIKEALENIKLSLGIDLDIDKIDISDKATYQLFSDGNTIGTFQFEST 711 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM+ L +QP ED+IA+ +LYRPGP+ I + RK G+E I P ++ LKET Sbjct: 712 GMQGHLRNLQPSTFEDLIAMNALYRPGPMQYIPKFIQRKKGEETITYDLPCMEKYLKETY 771 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+ +YQEQVM +++ ++ ++ E+D LR+AMGKK+ ++++ +FISG NG + I Sbjct: 772 GITVYQEQVMLLSREIANFTRGESDTLRKAMGKKLIDKLNHMYPKFISGGKANGYDEKIL 831 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I++ FA Y FNKSHA Y+ I+YQT ++K +YP +++A +M+ + N+ +I KF Sbjct: 832 EKIWDDWKAFASYAFNKSHATCYSWIAYQTGYLKANYPSQYMAGAMSRALSNITEITKFM 891 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864 ++++ I + P +N + F V I + L AIKGVG+ +I++ + F Sbjct: 892 DESKRMGINTLGPDINESLMKFSVNHRGDIRFGLGAIKGVGSQAVENILKEREVNGQFSD 951 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEK 917 + + R++ NR+ LE+L AGA D FG +R Q ++ LD + +Y + Sbjct: 952 IYNVMERINLTTCNRKTLENLAIAGAFDSFGIAREQFVEIDESGGDFLDALIRYGTQYKI 1011 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 +++ ++F E K S + R E+ ++G Y SGHPLD YK IL Sbjct: 1012 DQSQAQNSLFGEEAAAIITKPLPAPVSQPWTNLERLNKERDLIGIYISGHPLDKYKIILN 1071 Query: 977 KMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 K+ + + + +I +V ++ T++ G + + YE F+ Sbjct: 1072 KVCTTTVADLDNLNALADQDISFGGIVTDTREGMTKRDKPYGVIKLEDYKGAYELMFW 1129 >gi|118479750|ref|YP_896901.1| DNA polymerase III DnaE [Bacillus thuringiensis str. Al Hakam] gi|118418975|gb|ABK87394.1| DNA polymerase III catalytic subunit, DnaE type [Bacillus thuringiensis str. Al Hakam] Length = 1108 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 366/1027 (35%), Positives = 579/1027 (56%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PI Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I + +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSE-----------QEEKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ + AE ++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDEESQAEAVARAYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPAFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT+ IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIRIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL+ G + + RL+ EL+VI+ M FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLQK-------RYGTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ VLGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|311069419|ref|YP_003974342.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942] gi|310869936|gb|ADP33411.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942] Length = 1113 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 377/1026 (36%), Positives = 588/1026 (57%), Gaps = 37/1026 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQVHS YSLL A ++ ++ + ++A+TD + ++ A++F + A GI+P Sbjct: 2 SFVHLQVHSGYSLLNSAAAVEELVKEADTLGYTSLALTDDHVMYGAIQFYKACKARGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + +N +VLL + GYQ L+++ S + Q K Sbjct: 62 IIGLTASVFTDENEV----------EACPLVLLAKSNMGYQNLLKISSVL----QSKSKE 107 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 + WL+ EG+I +T G G I+ AE+ L + +FG D Y+ Q Sbjct: 108 GLKQKWLKSY-REGIIAITPGEKGYIETLLEAGLYDKAEQSALELQSVFGTDAFYLGYQP 166 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 +G + +++L+ +P+ AT + ++ +ED A+ L A+ ++ +R Sbjct: 167 FKGN-QALSDHILRLSAKTGIPVAATGDVHYIRKEDKTAYRCLKAIKAGEKLADLNREE- 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 TPD LK+ EM + + PEAL +V+IA +C + + LP F + K + Sbjct: 225 TPDLDLKSIEEMRMFYQEHPEALSASVQIAEQCHVDVNLGQTRLPSFPAPDG----KPAD 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L +G++ + +RL +EL+VI RMKFS YFLIV DF+++A Sbjct: 281 EYLAELCFSGMKE-------RFKSPDERVIRRLQYELDVIKRMKFSDYFLIVWDFMKYAH 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N I GPGRGS AGS+ AY L IT++DP++ +LLFERFLNP+R+SMPD DIDF RRD Sbjct: 334 ENGIVTGPGRGSAAGSLVAYVLYITNVDPIKHNLLFERFLNPERVSMPDIDIDFPDTRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+I+YV+NKYG AQIITFG+L AKAALRDVGR + + D+L KLIP+ P + Sbjct: 394 EMIQYVKNKYGAMHAAQIITFGTLAAKAALRDVGRVFGVNPKEADQLAKLIPSKPGVTLE 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + ++ I++K+EGL RH STHAAG+V+ + PL+ +VP+ + Sbjct: 454 DAR-KMSPQLNQRLNESSLLSQVFSIAKKIEGLPRHTSTHAAGVVLSEEPLTGIVPLQ-E 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ LTL++ + +K+D S I +DD + Sbjct: 512 GHEGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKEEKIKIDFSSISYDDEK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL+ T G+FQLESSGMR L ++P +EDI+A+ +LYRPGP++NI ++ +RK+G Sbjct: 572 TFSLLSKGDTTGVFQLESSGMRSVLRRLKPTGLEDIVAVNALYRPGPMENIPLFIDRKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 + + H + +LK+T GVI+YQEQ+M IA ++G++L EAD+LRRA+ KK K+ +D+ Sbjct: 632 RVPVHFPHNDLKDILKDTYGVIVYQEQIMVIASKMAGFTLGEADLLRRAVSKKKKDILDR 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ G K S A +++L+ KFA+YGFN+SHA AY++I Q A++K HYP+ F Sbjct: 692 ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + +T + N +KI ++ +A+ I+I+PPSVN F V + + YSL A+K VG Sbjct: 752 MCGLLTSVIGNEDKIAQYLYEAKGNGIRILPPSVNKSSFPFTVENGAVRYSLRAVKNVGV 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + + I +A DK F+ L DFC RV SK +NR+ +E+L+ +GA+D FG +R LL S+D Sbjct: 812 SAVKDIYKARKDKKFEDLFDFCFRVPSKSVNRKTIEALILSGAMDEFGQNRATLLASIDV 871 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++A+ + + +F + +FS K + + E+ LG YFS HP Sbjct: 872 AAEHAELFSAD--DDQMGLF--LEESFSIKPKYVETEEFPLVDLLQFEKETLGIYFSSHP 927 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L ++ L G ++ + + I L A+V + +T+ G + ++T S+ E Sbjct: 928 LSAHRDRLSARGAVPILKAQQSEKKQ-ILLGALVTKTKTIRTKTGQNMSFLTLSDETGEI 986 Query: 1028 EANFFP 1033 EA FP Sbjct: 987 EAVVFP 992 >gi|229158207|ref|ZP_04286274.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342] gi|228625165|gb|EEK81925.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342] Length = 1105 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLVHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETNDTY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|228941783|ref|ZP_04104330.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974708|ref|ZP_04135274.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981302|ref|ZP_04141602.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407] gi|228778502|gb|EEM26769.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407] gi|228785111|gb|EEM33124.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817995|gb|EEM64073.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942388|gb|AEA18284.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar chinensis CT-43] Length = 1108 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 368/1026 (35%), Positives = 589/1026 (57%), Gaps = 47/1026 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTMKIAERCQVEIPFHVNQLPKFPV----SSNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRLPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y + +++ I +++ + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQAMRYKK-KVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEM 978 Query: 1028 EANFFP 1033 EA FP Sbjct: 979 EAVLFP 984 >gi|228917242|ref|ZP_04080799.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842443|gb|EEM87534.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1105 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 367/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|326440734|ref|ZP_08215468.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC 27064] Length = 1146 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 323/1034 (31%), Positives = 519/1034 (50%), Gaps = 48/1034 (4%) Query: 39 DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM----------TNQ 88 IA+TD NL A +F +A AGI PIIG + + + Sbjct: 1 MGMSHIAMTDHGNLHGAYDFFHQAKGAGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRD 60 Query: 89 GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148 + + + G L L S Y ++ R+ + + +EGLI T Sbjct: 61 DVSGSGGYTHKTIWAANRTGLHNLFRLSSDAYAEGWLQKWPRMDKETIAQW-SEGLIAST 119 Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYT 206 G SG + A K ++ +FG R ++ L H +R ++++ Sbjct: 120 GCPSGELQTRLRLGQFDEALKAASEYQDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKK 179 Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266 ++P + TN+S + + + AHD L+ + +S DR R Y ++ + D Sbjct: 180 LDIPPLVTNDSHYTFDHEAGAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDQM-YAID 238 Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQ 325 +A + + + + + + + E + + G+ R Sbjct: 239 SSDAWQEGCRNTLLVAEQIDTSGMFEAKNLMPKFEIPAGFTEVTWFQEEVRTGMARRYPG 298 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 G +D +++ ++E++VI M F GYFL+VADFI WAKKN I VGPGRGS AGS+ Sbjct: 299 GV------PEDRQRQAEYEMDVIVSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSI 352 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AYA+ ITD+DP+ L+FERFLNP+R+SMPD DIDF + RR EVIRYV KYG ++VA Sbjct: 353 VAYAMGITDLDPIEHGLIFERFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAM 412 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND---PAHPVS------LQAIADDS 496 I T+G+++AK A++D R L PY+ DRL K +P D P+S ++ Sbjct: 413 IGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEAG 472 Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556 R +P V ++++ ++ +EGL R HAAG+++ P++ P++ + +T Sbjct: 473 EIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTIT 532 Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTK 615 Q++ E GL+K DFLGL+ LT++ ++ + +G+++++ IP DD TY LL Sbjct: 533 QWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYELLCRG 592 Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVS 673 TLG+FQ + MR L M+PD EDI A+ +LYRPGP+ Y RKN +++I Sbjct: 593 DTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITP 652 Query: 674 IHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 IHP ++ LKE T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK EE+ K Sbjct: 653 IHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNF 712 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 F +GA KNG S ++++L FA Y FNK+H++AY +++Y TA++K ++P E++A Sbjct: 713 TIFQAGARKNGYSDEAVQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMA 772 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTT 848 A +T D+ +K + + R+ I+++PP+VN +F GD+ I + L+A++ VGT Sbjct: 773 ALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTN 832 Query: 849 TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 I+ + S DF +V+ N+R +ESL+ AGA D G++R L+ + Sbjct: 833 VVESIIRCRKSKGKYSSFPDFLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEP 892 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQRVLGF 961 + V++ ++F +D+ S E+ +LG Sbjct: 893 MIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGFGLDVEFSDV-EWEKSYLLAQEREMLGL 951 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 Y S HPL + +L + G + + ++ Q+K T++G+ T Sbjct: 952 YVSDHPLFGIEHVLSDKSDASISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIAT 1011 Query: 1020 FSEPAKEYEANFFP 1033 + A E FFP Sbjct: 1012 VEDLAGSIECMFFP 1025 >gi|146329848|ref|YP_001209597.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A] gi|146233318|gb|ABQ14296.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 1175 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 408/1053 (38%), Positives = 600/1053 (56%), Gaps = 47/1053 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +V L VHS YSL + L +++I+ +IA+TD NNL++A++F Q A A I+P Sbjct: 3 DYVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC L I + + ++LL A G++ L ELVS Y DQ + Sbjct: 63 ILGCDLSIRDE------------VGQIHQLILLAQNALGFRHLCELVSFAYTHDQTPNEI 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L +GLI L+GG G + +A + A + ++K+F +R Y+ + R Sbjct: 111 AVDKTRLTAEQCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARF 170 Query: 190 RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 + SQ + ++ + VATN + F + D++ H+ + +A + R R Sbjct: 171 GQTEPPLFSQNLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRR 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 TP H+L+ ++ IF+D P+ L NT IA+RC+ +L + LP F EC DI Sbjct: 231 FTPQHHLRAPQDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDI---- 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364 E L +A GLE RL Q A+ Y++RL EL VI RM+F GYFLIVADFI Sbjct: 287 ERYLVQEAERGLEERLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFI 346 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 QWAK +++PVGPGRGSGAGS+ A+ L IT++DP+ + LLFERFLNP+R+SMPDFD+DFC Sbjct: 347 QWAKNHDVPVGPGRGSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCM 406 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 ++RD+VIRYV +KYGH++V+QI T G++ AKA +RDVGR L +PY VD++ K++PN Sbjct: 407 NKRDDVIRYVADKYGHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLG 466 Query: 485 HPVSL----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 + + + D V L++I+ LEGL R+ HA G+VI Sbjct: 467 VTLPDALGKTEKSRTHPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVI 526 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594 L+ +Y + VTQF+ + IE AGL+KFDFLGL+TLT++ ++ + Q Sbjct: 527 APTTLTDFSALYCEHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAP 586 Query: 595 KV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 D+ I DD T+ LL + T +FQLESSGM+ + +QPD ED+IALV+L+R Sbjct: 587 ANEKLDIRQIRDDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFR 646 Query: 652 PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 PGP+ + + + NRK+G+ K+V HP + +LK T GV++YQEQVMQ+AQ+L+ YSL E Sbjct: 647 PGPLQSGMVDDFINRKHGRAKVVYPHPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGE 706 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQK F++ AS G+ + +A++IF+L+AKFA+YGFNKSH+AAY Sbjct: 707 ADLLRRAMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAY 766 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQTAW+K HYP F+AA +T EMD EKI + + ++I+PPS+N DF Sbjct: 767 ALLSYQTAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFT 826 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I + L AIKGVG I+ E F SL D C R+D K L R+ LE+L++ Sbjct: 827 INQQGEILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIY 886 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVE 946 AGA D +R L L K A+ +++ N+ N+F+ + L + Sbjct: 887 AGAFDLIEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSW 946 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLA 998 + E+ VLG + SGHP V ++R + K E + L Sbjct: 947 QPQQQLMWEKSVLGLFLSGHPAQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLG 1006 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 ++V K+ ++KG ++T + + + E Sbjct: 1007 GLLVDKRNITSKKGKNFCFITIDDCSGKIEIAV 1039 >gi|229032249|ref|ZP_04188222.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271] gi|228729029|gb|EEL80032.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271] Length = 1105 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 366/1025 (35%), Positives = 581/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I +++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEED-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESEAEELARMYQSMFG-NFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVP----ANETNDMY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGTQIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|228929651|ref|ZP_04092669.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830038|gb|EEM75657.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1105 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLESSGMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +K+ ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKVVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|229186859|ref|ZP_04314014.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1] gi|228596596|gb|EEK54261.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1] Length = 1104 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 365/1025 (35%), Positives = 579/1025 (56%), Gaps = 50/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEE------------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 105 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 106 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 163 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 164 DELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 223 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 224 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 279 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RL+ EL+VI+ M FS YFLIV DF+++A +N Sbjct: 280 LRRVCEEGLQK-------RYGTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAHEN 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 333 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 393 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 453 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 510 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 511 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEKTF 570 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 571 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 630 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 631 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 690 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 691 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 750 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 751 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 810 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 811 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 870 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 871 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 917 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 918 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 975 Query: 1029 ANFFP 1033 A FP Sbjct: 976 AVLFP 980 >gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R] gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1194 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 317/1073 (29%), Positives = 522/1073 (48%), Gaps = 51/1073 (4%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 ++ K SFVHL H+ +S+L+G ++ + D++ A PA+ ITD N++ + F +K Sbjct: 6 HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113 GI+PIIG + + + K + +L G + L Sbjct: 66 EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 L S Q + R+ + E EG+I TG SG + A + Sbjct: 126 YLSSMASYEGQLGKWPRMDADIIAER-AEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184 Query: 174 FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 ++ ++G D ++ L H + S+++++ LP + TN+ ++ E +AH+ + Sbjct: 185 WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHA 289 + V + +DR + Y +E + D +NT+ IA R ++ Sbjct: 245 LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + + L ++ +AGL+ + +DY +R ++E++VI Sbjct: 305 EHSHDRMPIADVPEGHTPTSWLHHEVMAGLK-----DRFSGQQVPEDYIERAEYEISVID 359 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLFERFLN Sbjct: 360 MKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 P+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K AL+D R Sbjct: 420 PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479 Query: 470 SQVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKL 518 + +L P A + L I D RF R+ DP V R+ + ++ L Sbjct: 480 GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539 Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 EG+ R + HA +++ PL +PM++ +T ++ E GL+K DFLGL+ Sbjct: 540 EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599 Query: 579 LTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 LT++ +++ + L L +D ETY LL TLG+FQL+ GM++ L+ MQ Sbjct: 600 LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659 Query: 637 PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVII 690 P DI+A ++LYRPGP+ + Y +RKNG++ I IHP ++ +L ET G+I+ Sbjct: 660 PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F G NG S ++ Sbjct: 720 YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + + FA Y FNKSHAA Y ++S+ TA++K HY E++AA +T DN +K + D R Sbjct: 780 DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869 I+++ P +N ++F I Y L AI+ VG I++ + F D+ Sbjct: 840 HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 ++D+ N+R+ ESL+ GA D G++R L+ ++ +K ++FA Sbjct: 900 DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959 Query: 930 EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 +D + T+ + E+ +LG Y SGHPLD Y+ + Sbjct: 960 FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018 Query: 984 EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032 V G + + ++ ++ ++K GS VT + E F Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071 >gi|228954873|ref|ZP_04116893.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804862|gb|EEM51461.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1105 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 369/1025 (36%), Positives = 587/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|229152799|ref|ZP_04280982.1| DNA polymerase III subunit alpha [Bacillus cereus m1550] gi|228630619|gb|EEK87265.1| DNA polymerase III subunit alpha [Bacillus cereus m1550] Length = 1105 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 369/1025 (36%), Positives = 586/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + FI G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFIQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|229129888|ref|ZP_04258854.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4] gi|228653579|gb|EEL09451.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4] Length = 1105 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 367/1025 (35%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|254456520|ref|ZP_05069949.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083522|gb|EDZ60948.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 1138 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 408/1041 (39%), Positives = 642/1041 (61%), Gaps = 34/1041 (3%) Query: 5 LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + +S +F HL++H+ YS+ EGA+ ++++ D +++ ++A+ DT+NL ALEF++K Sbjct: 1 MAESAIQNFNHLKIHTQYSICEGAVKIDDLQDFAKSNKIKSLALCDTSNLCGALEFAEKI 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G QPI+G Q++ D + + + L +GY+R+I+L S +L Sbjct: 61 SKVGTQPIVGTQINFKFGDTVGL-------------LPLFSLNEKGYKRIIKLSSLSFLE 107 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + + + L E EG+ + +G + G F F DR Sbjct: 108 NDKLSDPHVDFNNLLE-NNEGVAIFSGTTFGLFGELFNKGKFTEIHDLYKKLNSTFDDRF 166 Query: 183 YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +QRH + + + + ++P++ATN +++++ +EAHD L+ + + T ++ Sbjct: 167 YIEIQRHNDQNELGFEKFNLNKSLELKIPIIATNEVFYINQDMHEAHDALICIGNKTYIN 226 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +K+R ++ HY K+ SEM +F+DLPEALEN RC+F PILP +E Sbjct: 227 EKNRKHLSNQHYFKSNSEMSELFADLPEALENNYNFPLRCNFRPLFSNPILPNISSEEG- 285 Query: 302 DIQKEEENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 ++ L+ +++GL+++ + + + DY+ RL+ EL++I MK+S Sbjct: 286 ---GNADDLLKKDSLSGLKIKFNKIFGIKENELDNDKNYLDYKDRLNHELSIIIEMKYSS 342 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SM Sbjct: 343 YFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRISM 402 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PDFDIDFC+++RD V Y+ KY + VA IITFG L+A+ +RDVGR L +PY VD + Sbjct: 403 PDFDIDFCEEKRDLVFEYLTKKYQ-DSVAHIITFGKLKARMVVRDVGRVLGLPYGFVDSI 461 Query: 476 CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 K+IP DP+ P + Q I+ + R ++ D V +L ++S KLEGL R+ +THAAG+VI Sbjct: 462 SKMIPFDPSRPQTLTQCISGEPRLQKLINEDQRVKKLTDLSLKLEGLNRNVATHAAGVVI 521 Query: 535 GDRPLSQLVPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 D+ L+++VP+Y+D S+L + TQF+M E AGL+KFDFLGLKTLT++ + + + Sbjct: 522 ADKKLTEVVPLYKDASSELLLPSTQFDMYSAENAGLVKFDFLGLKTLTVINNTQKLVKKI 581 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 D+ I ++D + + LL++ T+G+FQ+ESSGMR+AL M+P+ IEDIIALV+LYRP Sbjct: 582 DKNFDIEKISYEDQKVFELLSSGNTVGLFQVESSGMREALVQMKPNHIEDIIALVALYRP 641 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP+ NI YN+ K+G++ +HPL++ +LK T GVIIYQEQVMQIAQ LSG++ +AD+ Sbjct: 642 GPMSNISTYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGQADL 701 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKK + E++KQK+ FI+GA +NGI+K +A IF + FA+YGFNKSHAAAYA+I Sbjct: 702 LRRAMGKKKRAELEKQKQGFIAGAVQNGIAKDVAAGIFLKIEPFAEYGFNKSHAAAYAII 761 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQTA++KT+YP EF+AASMT+++ N K+ +F ++ ++ NI+++ P++N DF+ Sbjct: 762 SYQTAFLKTYYPKEFIAASMTMDISNQNKLSEFYEELKRLNIKVVRPNINECYADFRTEG 821 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 ++ YY+L IK VG ++++ + FDS+ DF RV+ K +N+ LE LV AGA Sbjct: 822 DKFYYALGGIKAVGYEAISNVIKERSENGKFDSINDFLKRVNPKDMNKLQLEGLVKAGAF 881 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D +R L S+ N + + N++ ++F+ ++ +D N R Sbjct: 882 DNLNNNRQSLFNSIPNFILKTKNIFDNKSANQIDLFSEDESLQNDITH--DIEDWNFEER 939 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 E +GF+ S HPL+ + I IK Y + + +AA ++ Q++KT K Sbjct: 940 LSKEFEAVGFFISNHPLNQFTEIFDDYKIKDYSNFNSNDEIKDANIAATLLKLQERKTAK 999 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G+ + ++ +E F Sbjct: 1000 GNAYAVLKLTDLNSVFELFIF 1020 >gi|229198755|ref|ZP_04325451.1| DNA polymerase III subunit alpha [Bacillus cereus m1293] gi|228584688|gb|EEK42810.1| DNA polymerase III subunit alpha [Bacillus cereus m1293] Length = 1105 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 365/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GI PIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ ++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFG-SFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPAFMNRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS + EA+ NTVEIA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + +RL+ ELNVI+ M FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|194306037|dbj|BAG55471.1| putative DNA polymerase III, alpha subunit [uncultured bacterium] Length = 1317 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 346/1101 (31%), Positives = 565/1101 (51%), Gaps = 81/1101 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +FVHL VHS YSLL+G +N+++++ QPAIA+TD ++ + F + + Sbjct: 1 MSDQGTFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++PIIG + + M+ Q +++L + GY L+E+ SR L D Sbjct: 61 GGVKPIIGIETYLAMRSMQDKDAQ---RDKERFHMLMLAANQTGYMNLLEVASRAQL-DG 116 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 RI +++ +EG+I TG + I RA + +A+K + + +FG DRL+ Sbjct: 117 YYYKPRIDRNFMAA-HSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLF 175 Query: 184 VNLQRHRGYD-RYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 V LQ H + +++++A L +ATN+ + D H+VL+ + + V Sbjct: 176 VELQEHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTV 235 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI--LPRFIEK 298 + +YLK+ EM ++F + + R I+++ + Sbjct: 236 NAPKLTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLP 295 Query: 299 ECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E D + LR+ GL R + + + +D R RL+ ELN+I RM F YF Sbjct: 296 EFDVPEGYDAHGYLRHLCEQGLIWRYGE---ERARNDEDLRARLEHELNIITRMGFDTYF 352 Query: 358 LIVADFIQWAKKNNIP---------------------VGPGRGSGAGSVTAYALTITDID 396 LIV D +WA +++ RGSGAGSV AY L IT ID Sbjct: 353 LIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIWWNVRGSGAGSVVAYTLGITSID 412 Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456 PL L+FERFLNP R+SMPD D+D+ D R +++ Y + +YG E+VAQIITFG++ A+A Sbjct: 413 PLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMGARA 472 Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD------DSRFREARLADPSVDR 510 A+RDVGRAL MP VD + +L+P P PV ++ + D + + + +V Sbjct: 473 AIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESAVKT 532 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD------LPVTQFNMKWIE 564 LL+ + LEG+ RHAS+HAAG+++ DRPL + VP+ R D VTQ+ M+ +E Sbjct: 533 LLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPMEIVE 592 Query: 565 KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD------------DHETYHLL 612 GL+K DFLGL TLT+++++ + +R V + +L Sbjct: 593 SIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLFDML 652 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN-----G 667 G+FQ+E +GMR+ + M+P + IIA +SLYRPGP++NI Y R + Sbjct: 653 GRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMENIPEYIRRMHSSIYDN 712 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K+ + P ++P+LK+T G+++YQEQ+++IA L+GY+ +AD++R+A+ KK K+ M++ Sbjct: 713 KDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKLMEE 772 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + +F GA + G S+ + I+ + FA YGFNK+HAA YA ++ QTA++K HYPVE+ Sbjct: 773 HRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYPVEY 832 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIK 843 LAA +++E DN EK++++ +A+ I I PP +N +DF + D+ I + L AIK Sbjct: 833 LAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLGAIK 892 Query: 844 GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 G I+ E A+ F L+D RVD +++ +R LE ++ A + +G + Q L Sbjct: 893 NAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMPQFL 951 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----------TLEKFSVENSSVRF 952 ++LD I + + ++F G+ ++ Sbjct: 952 EALDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIPHKQML 1011 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 E E+ LG + S HP++ +L T+ G +R+A M+ + + T+KG Sbjct: 1012 EWEKEALGVHVSEHPMERPLAMLTSHTSATIGGLDITMNGKQVRIAGMISTLRTLTTKKG 1071 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + + T + + + FP Sbjct: 1072 DPMAFATLEDMDNKIDLVLFP 1092 >gi|193215617|ref|YP_001996816.1| DNA polymerase III subunit alpha [Chloroherpeton thalassium ATCC 35110] gi|193089094|gb|ACF14369.1| DNA polymerase III, alpha subunit [Chloroherpeton thalassium ATCC 35110] Length = 1190 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 355/1073 (33%), Positives = 556/1073 (51%), Gaps = 62/1073 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F+HL H+ YS+ + + + A+ +TD +++F+ E A ++ Sbjct: 2 SEFIHLHTHTHYSMQSSTIMPGELFAECQKLDMAAVGVTDYSSMFNMPELFSYAKKHEVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG +L + + + ++LLV GY+ L +++S KQ Sbjct: 62 LIIGAELFLVPG------AMTEKKEQVLYHLILLVKNETGYKNLCKILSAAARDGFYKQM 115 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R + +Q+ EGLI LT G + + + A + +K LF D Y+ + Sbjct: 116 PRADFNLIQK-NAEGLICLTACREGELSQYILKDEIDKARDFVARYKNLFQDDFYIEMHS 174 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R ++ + LA + LVATN+ +L +ED + D L A+ + +S +R R Sbjct: 175 HNAPDDARLNEAKIALAKEFGIKLVATNDVHYLKKEDAQYQDALQALKNKQTLSSPNRNR 234 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 T YLK EM +F + L NT+EIA +C+F+ P LP F + Sbjct: 235 LPTEHFYLKTPDEMARMFDNAQGELVNTLEIAEKCTFVFNDQQPHLPHFPIPSEF---EN 291 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 +E LR+ G + A G + R+R+++EL++I +M ++ YFLIV+D I Sbjct: 292 DEAYLRHLTYEGAKK-KYGDLDAMGEKGAEVRERIEYELSIICKMGYATYFLIVSDLISA 350 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 +++ VGPGRGS AGS+ AY IT +DP+++ LLFERFLNP+R+SMPD DIDF Sbjct: 351 SREMGYSVGPGRGSAAGSIVAYLTNITQVDPIKYKLLFERFLNPERVSMPDIDIDFTPVG 410 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 + V+ Y KYG VA++I G+L AKAA+RDVGR L + VD++ KL+P P Sbjct: 411 KQRVLDYTIKKYGAASVAKVIAVGTLGAKAAIRDVGRVLDINLQTVDKIAKLVPGKPGMT 470 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +S A + + +L++ ++ LEG R+ S HAA +V+ D P+ ++VP+Y Sbjct: 471 LSKAADQVKEFAELESSPEQKIQKLMKFAKALEGRARNVSMHAAAVVVTDGPVEEVVPLY 530 Query: 547 ----------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIEKAGL+K D+LGL+T Sbjct: 531 VSNKIETEERRYIDEFDEKSEKEKGKGKSGDDQKQVVTQFDKDWIEKAGLLKIDYLGLET 590 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R V +DL +P DD + Y + GIFQ ES GM+Q + ++P Sbjct: 591 LAVVDETLRLIQKRYGVTIDLESVPIDDKKAYKIFQEGKMAGIFQFESQGMQQYMMKLRP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ + N KNG+EKI +HP++ +L+ET GVI Sbjct: 651 TVIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKNGREKIEYMHPMLAEILEETYGVI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVM ++Q++ G+SL++AD LR+AMGKK E M K K+ F+ GA + + K +A I Sbjct: 711 VYQEQVMLVSQVMGGFSLAKADNLRKAMGKKKPEIMAKFKDEFVEGAVEKSVDKAVATGI 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+L+A+FA YGFNKSH+AAY +++Y TA++K HY EF+AA + E + ++K +A Sbjct: 771 FDLMAEFAGYGFNKSHSAAYGILAYWTAYLKAHYTAEFMAAILNSEAGDTARMKHLTDEA 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEA--SADKPF 862 + I I+PPS+N F V D I +AIK VG AR I+ + +PF Sbjct: 831 KSMGIAILPPSINHSDALFMVEDIEKGKKAIRVGFSAIKHVG-GAAREIVRSRWRRKEPF 889 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L D CS VD + +N++ LE L+ AGALD F +R +L+ +L +Y Q K+ T Sbjct: 890 ADLFDLCSTVDLRVVNKKALECLIEAGALDEFDENRAKLIGNLPKAVEYGQKRNKSATLG 949 Query: 923 HENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 E F E +E+F + + E E+ ++GFY S HPL+ Y+ Sbjct: 950 QEGFFNDENFFADKADAYPEMEEFEPWPDAEKLEREKNLIGFYVSTHPLEPYRRDYEAFA 1009 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ ++V ++ +KG+ + + + + + F Sbjct: 1010 TIKLSD-KDIQNKRLQKVIGVIVETKKHFDKKGNEMMFGVIEDFTGKADFTVF 1061 >gi|116667751|pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E. Coli Replicative Dna Polymerase Iii Length = 910 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 402/926 (43%), Positives = 570/926 (61%), Gaps = 36/926 (3%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 P FVHL+VHS YS+++G ++ K AA PA+AITD NL ++F AG Sbjct: 2 SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI+G ++ Q + + +L + GYQ L L+S+ Y G Sbjct: 62 IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ L Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170 Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 R D V+LA LP+VATN+ F+ D++AH++ +A+ + R Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 PR +P Y+++ EM +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285 Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E+ L +A GLE RLA + +Y +RL+ EL VI +M F GYFLIV Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L PY VDR+ KLIP Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI ++ Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596 P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 D++ IP DD +++ +L T +FQLES GM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644 Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + +V + +RK+G+E+I H + P+L+ T G+I+YQEQVMQIAQ+LSGY+L Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 AD+LRRAMGKK EEM KQ+ F GA KNGI+ +A+ IF+L+ KFA YGFNKSH+AAY Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A++SYQT W+K HYP EF+AA MT +MDN EK+ + + ++I+PP +N+ F Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824 Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L+ Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQ 913 +GA D G R L+ SL + K A Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAAD 910 >gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152] Length = 1445 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 344/1071 (32%), Positives = 550/1071 (51%), Gaps = 64/1071 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64 F HL H+ +S+L+ + + NI+ A D PA+A+TDT N+ ++ F K Sbjct: 260 FAHLHNHTQFSVLQSTMQIGNIVKAAAKDNMPAVAMTDTANMMASFHFVSAVLNHNKTAE 319 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++PIIGC+ +I ++ K+ +VLL GY L ++ S + +D Sbjct: 320 TPMKPIIGCEFNICED------HKNKSQKDNGYQVVLLAKNKNGYHNLAKMSSIAF-VDG 372 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI +++ + +I+LTG G + + AE+ LL +K+ F D Y+ Sbjct: 373 FYYVPRIDKEIIKKY-KDDIIVLTGNLYGEVPSKILNLGEKQAEEALLWWKEQFQDDFYI 431 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH D +++ + H++ +VATNN+ +L ++D AHD+L+ V + Sbjct: 432 ELMRHNQQDENIVNETLLKFSKKHDIKIVATNNTFYLEKKDANAHDILLCVKDGEKQATP 491 Query: 244 -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVH 288 ++Y K+ EM ++F+DLPEA+ N EI + Sbjct: 492 KGKGRGYRYGLPNEEYYFKSSDEMKTLFADLPEAIINIQEIVDKIEIFTLARDVLLPAFD 551 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348 P + D ++ E N L++ G + I G + ++RLDFEL VI Sbjct: 552 IPDEFKDARDNEDGGKRGENNFLKHLTFEGAK-------IRYGEITPEIKERLDFELEVI 604 Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL Sbjct: 605 EKTGYPGYFLIVEDFIREARKMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 NP+R+SMPD DIDF + R V+ YV +KYG +VAQIIT+G++ AK+++RD R L +P Sbjct: 665 NPERVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIAD--------------DSRFREARLADPSVDRLLEI 514 + DR+ KLIP + R V + Sbjct: 725 LFEADRIAKLIPGIKLKNIFGDDPKSKGKVDGLRAEEKQLVEELRTMSSGSDLVSETINK 784 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + LEG R+ HA G++I ++ VP+ SD+ VTQF+ +E AGL+K DFL Sbjct: 785 ATILEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844 Query: 575 GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GLKTLTL++ ++ + + GV++D P DD +TY L T+GIFQ ES GM++ + Sbjct: 845 GLKTLTLIKDTVKIVKAKHGVELDPENFPLDDEKTYELFQRGETVGIFQYESPGMQKHMR 904 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 ++P D+IA+ +LYRPGP++ I + NRK+G E I P ++ L ET G+ +YQE Sbjct: 905 SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGITVYQE 964 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVM ++Q L+ ++ EADVLR+AMGKK +DK K +FI A KNG + I++ Sbjct: 965 QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGKNGHDEEKLEKIWKDW 1024 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 FA Y FNKSH+ YA I+YQTA++K HYP E++A+ ++ M +++ + F ++ ++ Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMKDIKAVSFFMEECKRMG 1084 Query: 814 IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871 ++++ P +N + F V + + + +AA+KGVG R I+ + + S+ D R Sbjct: 1085 LEVLGPDINESYLKFSVNQEGAVRFGMAAVKGVGAAAVRAIIAERKENGNYSSIFDLAKR 1144 Query: 872 VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923 VD + N++ +SL+ AGA D F R Q + L+ K+ ++N + Sbjct: 1145 VDLRAANKKSFDSLIKAGAFDSFSDTHRAQYFATDEKGITFLERAMKFGSKYQENENSAQ 1204 Query: 924 ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKMGIK 981 ++F + + + + E+ V+G Y S HPLD +K + +K Sbjct: 1205 VSMFGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCNASLK 1264 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + G N+ A ++ Q + ++ G + E F Sbjct: 1265 YFKGDLNKYVGMNLSFAGIITEVQHRVSKAGKGWASFFIEDYGDSNEFRVF 1315 >gi|229081856|ref|ZP_04214348.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2] gi|228701444|gb|EEL53938.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2] Length = 1105 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 368/1025 (35%), Positives = 587/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDI+P+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDINPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|228910428|ref|ZP_04074243.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200] gi|228849194|gb|EEM94033.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200] Length = 1105 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 367/1025 (35%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG + A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDEMSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|229013809|ref|ZP_04170937.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048] gi|229135439|ref|ZP_04264226.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196] gi|229169331|ref|ZP_04297041.1| DNA polymerase III subunit alpha [Bacillus cereus AH621] gi|228614094|gb|EEK71209.1| DNA polymerase III subunit alpha [Bacillus cereus AH621] gi|228648000|gb|EEL04048.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196] gi|228747478|gb|EEL97353.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048] Length = 1107 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 364/1025 (35%), Positives = 582/1025 (56%), Gaps = 47/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ T++ +F Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ T Sbjct: 165 DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETNDTY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL-RD 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 453 AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 921 QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978 Query: 1029 ANFFP 1033 A FP Sbjct: 979 AVIFP 983 >gi|68535846|ref|YP_250551.1| DNA polymerase III subunit alpha [Corynebacterium jeikeium K411] gi|260578063|ref|ZP_05845985.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC 43734] gi|68263445|emb|CAI36933.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411] gi|258603803|gb|EEW17058.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC 43734] Length = 1189 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 306/1075 (28%), Positives = 521/1075 (48%), Gaps = 54/1075 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S SFVHL H+ YS+L+G ++ + ++ PA+ +TD N++ A F + A Sbjct: 1 MSGS-SFVHLHNHTEYSMLDGMAKVDLLAKEVVRQGMPAVGMTDHGNMYGADAFYRAMTA 59 Query: 65 AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114 AG++PIIG + I + + + + ++ A G + L Sbjct: 60 AGVKPIIGIEAYIAPESRFNQQRVRWGKPEQKSDDVSASGAYLHQTMIAENATGLRNLFY 119 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 L S Q + R+ + + +EG+I TG SG + A + + Sbjct: 120 LSSMASYEGQLGKWPRMDAELIAQ-HSEGIIATTGCPSGDVQTRLRLGQFDKALEAAGMW 178 Query: 175 KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 + ++G D ++ L H ++ ++++ ELP + TN+ ++ E+ AH+V++ Sbjct: 179 QDIYGKDNFFLELMDHGLEIEKRVRDDLLEIGRKLELPPLVTNDCHYVLEQQAPAHEVML 238 Query: 233 AVAHSTVVSQKDRPR--------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284 V + + + + T + ++P+ +NT+ +A R Sbjct: 239 CVQTGSTLDEPTLDQGGKRFAFSGTGYYVRSAEDIRAQWDKEVPKGCDNTLWVAERVQDY 298 Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 +V + L ++ + GLE R +Y R +E Sbjct: 299 SEVWEEHPHDRMPIADVPEGHTPTTWLTHEVMKGLEERFPG-----KEVPAEYIDRAKYE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++VI + YFLIVA+ I+ A+ I VGPGRGS AG++ AYALTIT+IDP+ LLF Sbjct: 354 ISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R S PD DIDF RR E+IRY +++G +++AQ+ITFG+++ K A++D RA Sbjct: 414 ERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARA 473 Query: 465 L--QMPYSQVDRL------CKLIPNDPAHPVSLQAIADDS---RFREARLADPSVDRLLE 513 Q + DR+ + + P H ++ R+ DP V ++ + Sbjct: 474 HYGQAGFQMADRITKALPPAIMAKDIPLHGITDPEHERYPEAAEVRQLIETDPDVAKIYK 533 Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573 + LEG+ R A HA +++ PL +PM++ + +T + E GL+K DF Sbjct: 534 DALGLEGVIRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593 Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632 LGL+ LT++ +L+ + R +DL + D TY LL TLG+FQL+S+GM++ L Sbjct: 594 LGLRNLTVIGDALENIKANRDFDLDLENLDTVDDPTYELLARGETLGVFQLDSAGMQKLL 653 Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPL----IDPMLKETQ 686 + M+P DI+A ++LYRPGP+ + +RKNG++ IV IHP + +L+ET Sbjct: 654 KRMKPTGFNDIVAALALYRPGPMGVDAHWEYADRKNGRKPIVPIHPELEEALHEILEETY 713 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 G+I+YQEQ+M+I+Q ++ Y+ +AD R+AMGKK E ++K+ F SG NG S Sbjct: 714 GLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVTFESGMKSNGYSADAI 773 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 +++ + FA Y FNKSHAA Y ++S+ TA++K +Y E++AA +T D +K + Sbjct: 774 KTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYL 833 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865 D R I+++ P VN F+ I + L A++ VG I+ + + F Sbjct: 834 ADCRHLGIRVLSPDVNDSRYTFQSVGKDIRFGLGAVRNVGEDVVNSIIASREEKGAFTDF 893 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 D+ ++D N+RV ESL+ AGA D G+ R ++ ++ +K + Sbjct: 894 SDYLDKIDLVAANKRVTESLIKAGAFDSLGHPRKGMVLVHEDAVDAVTATKKAAAKGQFD 953 Query: 926 IFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 +FA G ++ + + E+ +LG Y SGHPLD ++ L Sbjct: 954 LFAGLGGDDDAGDVFRVEVPD-QEWERKHQLALERDMLGLYVSGHPLDGFEDALDAQVDT 1012 Query: 982 GYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFFP 1033 + ++++ ++ + +++ R G+ T + + E FP Sbjct: 1013 PLTTVLSGELPNNKDLKIGGIISAVERRIDRNGNPWAIATLEDQHGAQVELLVFP 1067 >gi|229062288|ref|ZP_04199609.1| DNA polymerase III subunit alpha [Bacillus cereus AH603] gi|228717016|gb|EEL68697.1| DNA polymerase III subunit alpha [Bacillus cereus AH603] Length = 1107 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 364/1025 (35%), Positives = 582/1025 (56%), Gaps = 47/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQPIIG Sbjct: 2 HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ + AE+ T++ +F Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TP 250 D ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ T Sbjct: 165 DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS EA++NT+ IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETNDTY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL+ G + + RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + + +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL-RD 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 453 AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + + + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 RIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E +K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL Sbjct: 812 VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 921 QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978 Query: 1029 ANFFP 1033 A FP Sbjct: 979 AVIFP 983 >gi|302388689|ref|YP_003824510.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM 16646] gi|302199317|gb|ADL06887.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM 16646] Length = 1061 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 352/1033 (34%), Positives = 548/1033 (53%), Gaps = 36/1033 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F HL VHS YSLL+G L ++ K A PA+A+TD L+ + F + AGI+P Sbjct: 2 AFCHLHVHSEYSLLDGLCRLPLLVKKAAELAMPALALTDHGGLYGMVPFYRLCLEAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC++ + + + +VLL EG++ L+ LV+R + +D Sbjct: 62 ILGCEVYV------VEDVTCRWGKESFHHLVLLSENQEGFKNLLSLVTRSH-VDGFYYRP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R+ L +GLI L+G G + + AE+ + +FG D ++ LQ Sbjct: 115 RVDKKLLAS-HAKGLIALSGCIRGQVADLILRGDVKAAEEAAKEYADIFGRDNFFLELQY 173 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H ++ + +A + LVATN+ +L D H VL+AV + + Sbjct: 174 HGLAAEKKANFWMRSIAERLGIGLVATNDVHYLQPSDAGTHRVLLAVQTLS-ALGEAASL 232 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 HYLK+ +EM ++F ++P ALENTV IA RC L + LP E Sbjct: 233 PGNQHYLKSPAEMEALFREIPGALENTVAIAERCDVRLPLGGTKLPEIALPEGV----SA 288 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR G R Q+ + RL++EL+VI + ++GYFLIV D + +A Sbjct: 289 DDYLRKLCFQGAAARYG------RPLPQEVKDRLNYELSVIKKTGYAGYFLIVKDIVDFA 342 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +K I VG GRGS AGS+ AY L ITD+DPL++ L+FERFLNP+R+S PD DID C R Sbjct: 343 RKRGIIVGAGRGSAAGSLAAYVLGITDVDPLKYGLIFERFLNPERISPPDIDIDLCHLGR 402 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EV+ Y+++++G ER+A + F +LQA+AALRD GRAL + Y ++D C IP +H Sbjct: 403 REVLEYIRHRFGRERIAHVGAFSTLQARAALRDTGRALGLAYEKIDAACSRIPY--SHIN 460 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ + D V R I++KL+GL RH + H+AG+ I DRPL++ VP+ R Sbjct: 461 LEDALKESPHLSSLVKNDAGVRRAFAIARKLQGLPRHMTQHSAGVAIADRPLTEYVPLQR 520 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 ++ +M +E+ GL+K D LGL+ LT++ ++L + R + + IP DD Sbjct: 521 ASGEEIITQA-DMYALEELGLVKIDLLGLRFLTVIGETLKLVRDRYGIDMKPEEIPLDDE 579 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L T G FQLES GMR+ L ++P IED+ A+++LYRPGP+ + + Sbjct: 580 KTYMVLARGDTGGCFQLESGGMRKMLRRIKPKNIEDLSAVLALYRPGPLKSGMAEEFIAR 639 Query: 667 GK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 + + + IHP ++P+L++T GV +YQEQ+MQ A L+SGY+ EAD+LRRA+ KK K+E Sbjct: 640 RQGIKPVSYIHPALEPVLRDTYGVFVYQEQLMQAACLISGYTPGEADLLRRAIAKKKKDE 699 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++++K RF+ A + GI + A +F L F DYGFNKSH+ +YAV++Y+T +++ H+P Sbjct: 700 IEREKPRFLKRAVERGIDEKTAGELFATLEAFGDYGFNKSHSISYAVMAYRTVYLREHFP 759 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLA 840 +E+ A+ L MD +++ + +AR+ I+++ P +N F I LA Sbjct: 760 LEYFASLFNLYMDTPSRLQLYLCEARRREIRLLLPDINMSGAGFVPEGGPHQRAIRAGLA 819 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IK +G I++A D PF DFC RVD + +N R LESLVF+GA D FG R Sbjct: 820 LIKNLGPRGMEEILQAREDCPFTGFFDFCRRVDRRVINARALESLVFSGAFDSFGIPRPA 879 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L+ SL + R + + L + S + E +G Sbjct: 880 LIISLKWMLSGCS----GRPQNQLCLLNENPDVEALAADLS-VADFTPSQKMAQEMMSMG 934 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 +Y + HP++ K + + +R++ +++ + +TR G R+ + Sbjct: 935 YYITAHPMEFIKGRPEETCTHTASDVEEIGEKQRVRISGILLDLRSGRTRSGERMLFARL 994 Query: 1021 SEPAKEYEANFFP 1033 + E FP Sbjct: 995 EDLTGSVELVIFP 1007 >gi|229192805|ref|ZP_04319763.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876] gi|228590644|gb|EEK48505.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876] Length = 1105 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 367/1025 (35%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 D ++ + + +VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 DELLLQEKLPEFISRVNISVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 YILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G NG ++T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLGNGYNETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ LGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|148555255|ref|YP_001262837.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1] gi|148500445|gb|ABQ68699.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1] Length = 1155 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 466/1035 (45%), Positives = 625/1035 (60%), Gaps = 28/1035 (2%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L++ S+Y++LEGA+ I PA A+TD N L++A+ FS A G+QP Sbjct: 5 SFVPLRIFSAYTMLEGAIDPKAIAKHAKKLGFPAAALTDRNGLYAAMAFSDGAKKEGVQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG L I ++ + L GY L LVS +L + Sbjct: 65 VIGTMLAIRRPGIDQLIIDW---------LALYAQDMTGYDNLCALVSAAHLERPVHEDA 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + LS L E T+GLI LT G G + R + A + LF RLYV L R Sbjct: 116 HVPLSAL-EGRTDGLIALTAGGEGALTRLLAAEQAGAAASYADKLEALFPGRLYVELARR 174 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ LAY LPLVATN + F E + AHD ++ +A S+ + +RPR Sbjct: 175 GNADEEAAEEALIDLAYARNLPLVATNPACFAEPEFHAAHDAMLCIASSSYIDTAERPRS 234 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +PD ++K +EM +F D+PEAL NT+ +A+RC+ A + I ++ E Sbjct: 235 SPDLWMKPAAEMAKLFEDIPEALANTLVVAQRCAV-----AAPYRKPILPSLAGDREGEA 289 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A GLE+RL + + Q Y RL FE +I +M F GYFLIVADFI+WAK Sbjct: 290 EALRRDAREGLEMRLEKLGVTDAEQRQAYFDRLAFETEIIIKMGFPGYFLIVADFIKWAK 349 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 ++IPVGPGRGSGAGSV A+ALTITD+DPLR LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 350 DHDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRG 409 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P + Sbjct: 410 EVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 469 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ D V RLL+++ KLEGL RH+STHAAG+VIGDR L LVP+YR Sbjct: 470 LDRALNGVPELAAEYKGDIEVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRRLDALVPLYR 529 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ FL QRG+ VDL +P+DD E Sbjct: 530 DPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLNQRGIAVDLDSLPWDDPE 589 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y LL T+G+FQLES GMR+ L ++P C EDIIALVSLYRPGP+DNI + RKNG Sbjct: 590 VYALLQRGDTVGVFQLESEGMRRTLAAVRPTCFEDIIALVSLYRPGPMDNIPTFGARKNG 649 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E+I HPL++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD Sbjct: 650 REEIEYPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 709 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+ RF+ G + N I+ A +F+L+ KFA YGFNKSHAAAYA+++Y TAW+K H+ EF Sbjct: 710 QRSRFVEGCAANDIAAAKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHKAEF 769 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIK 843 AASM +M +K+ F D R+ IQ + P +N +F V + Y+L A+K Sbjct: 770 YAASMCYDMAQTDKLAIFIDDMRRMGIQCLGPCINHSEAEFAVEQQDEELFVRYALGALK 829 Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 GVG ++EA PF SLEDF R+D ++LNRR LESL GA D R + Sbjct: 830 GVGEKAMEQLVEARKAKGPFGSLEDFADRIDPRQLNRRQLESLAGGGAFDEIETERAGIF 889 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 S + I +A + R + +F + I +++ + R E+ GFY Sbjct: 890 ASAELILAHASSAAEQRESGQGGLFGDSPAALAP-IRIDRGLHWTLADRMAAEKESFGFY 948 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017 FS HP D + + G + + A G + ++A++ + + + KG R Sbjct: 949 FSSHPTDQVRHLAEANGARSFAALCALPAPVDGGRVNSVMSALIEDARWRTSAKGKRYMM 1008 Query: 1018 VTFSEPAKEYEANFF 1032 T S+ + ++ A F Sbjct: 1009 ATCSDSSGQFIATCF 1023 >gi|229180923|ref|ZP_04308258.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W] gi|228602480|gb|EEK59966.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W] Length = 1105 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 367/1025 (35%), Positives = 586/1025 (57%), Gaps = 49/1025 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+IG Sbjct: 2 HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 I ++ +VLL GYQ L+++ S + + I Sbjct: 62 LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 107 KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164 Query: 193 DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250 ++ + +P+VATN+ ++++ D H+ L++V T ++ DRPR T Sbjct: 165 AELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 225 QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GL G + + +RL+ ELNVI+RM FS YFLIV DF+++A +N Sbjct: 281 LRRVCEEGLRK-------RYGEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAHEN 333 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+ Sbjct: 334 HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 394 IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 454 -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + G ++D+ +P D +T+ Sbjct: 512 NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK Sbjct: 572 QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+++ Sbjct: 632 KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ Sbjct: 692 KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T Sbjct: 752 ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 812 VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA + G K + + + E+ VLGFY S +P Sbjct: 872 EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918 Query: 970 VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 Y + +++ I + A + R + S + +T+K ++ ++TF + E E Sbjct: 919 QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976 Query: 1029 ANFFP 1033 A FP Sbjct: 977 AVLFP 981 >gi|88607188|ref|YP_505564.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ] gi|88598251|gb|ABD43721.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ] Length = 1127 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 468/1025 (45%), Positives = 662/1025 (64%), Gaps = 31/1025 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ + PA+A+TD+ NLF +LEFS A AG+QPI Sbjct: 5 FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + ++ N + +I+LL +AEG+ L L+S + Q ++ R Sbjct: 65 IGCNIMVEESGN------------NLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L ++ GLI LTGG + RA N + + L + ++F D +YV LQRH Sbjct: 113 VNIDDLLKL-NGGLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRHG 169 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 R E +++ AY +PLVATN+ F D++AHD+L ++ V Q+DR R+T Sbjct: 170 LNGQREVEELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRLT 229 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+HY K SEM +FSD+PEA+ NT IA+RCSFI +V P LP F E + E Sbjct: 230 PEHYFKTASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEG----RTEAE 285 Query: 310 ELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL A+AGLE ++G Y +RL +EL V+ M++SGYFLIVADFI+W+K Sbjct: 286 ELTECALAGLEIRLKSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSK 345 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 346 QNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY+Q+DR+CK+IP+DP PV+ Sbjct: 406 KVIEYVKEKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVT 463 Query: 489 L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 L +AI D + + D +V +L+EIS KLEGLYRHAS HAAGIVI D+PL VP+Y Sbjct: 464 LLEAIEMDQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYY 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ+NMK++EKAGL+KFDFLGL+TLT++ + + RG +++LS IP +D + Sbjct: 524 DKSSSLPITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARGEEIELSKIPLNDKK 583 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+ ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI +Y +RK+G Sbjct: 584 TYEMLSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKHG 643 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E+ IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL EAD+LRRAMGKKIKEEMD+ Sbjct: 644 LEEPDYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDR 703 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q++ F+ GA NGI ++ A IF+L+AKFA YGFNKSHAAAYA+IS+QTA+++ +Y EF Sbjct: 704 QRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEF 763 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 ASM L++D+ +K+ CQ A+ I +MPP +N +F V N I Y L A+K VG Sbjct: 764 FTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNSIRYGLGALKNVGQ 823 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 TA I+ + + DF V + +R LESL+ +G+LD +R QL SL Sbjct: 824 LTAHEILPV-EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASLGI 882 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 I + + + ++F+ ++ LE+ + E+E +GFY HP Sbjct: 883 ILNIIENKKVSMDAHQFSLFSEKEEG-----QLEEVDDWTEDEKIEHEFATIGFYLRYHP 937 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L Y+ +L K G++ + + A +V S + ++ R V S+P Sbjct: 938 LSKYEQVLGKFGVRFVSSTQEEKESGVTKRAGVVSSVK-MRSANKERFAIVRVSDPHGVN 996 Query: 1028 EANFF 1032 + F+ Sbjct: 997 DVAFY 1001 >gi|315453387|ref|YP_004073657.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179] gi|315132439|emb|CBY83067.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179] Length = 1190 Score = 673 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 367/1067 (34%), Positives = 582/1067 (54%), Gaps = 61/1067 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E F HL +H+ YSLL+GA + + +I +++++D N+F A++F Sbjct: 1 MEN---FTHLHLHTEYSLLDGANKIKILAQRIKELGMTSVSMSDHGNMFGAIDFYTCMKK 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + + +NL+ + L EGY L+ L S+ +L Sbjct: 58 EGIKPIIGIETYLHNAENLE-----DKQSRQRFHLCLYAKDQEGYANLMYLSSQAFLK-G 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174 RI L+E +GLI + G I+ N+ + A++ + Sbjct: 112 FYYFPRINKKLLKER-AKGLICSSACLQGEINWHLNLNNPKNKQYGAKGYEEAKRIACEY 170 Query: 175 KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 + +FGD Y+ + RH D+ Y + Q+++L+ + L+ATN++ + +ED A +V M Sbjct: 171 QDIFGDDFYMEIMRHGITDQLYIDEQLIKLSLQTGIKLIATNDTHYTKQEDARAQEVAMC 230 Query: 234 VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 VA + KDR + + + Y+K+ ++M +F+D+PEALE+T EIAR+C L + Sbjct: 231 VAMNKTFGDKDRLKHSVHEFYIKSPAQMAELFADIPEALEHTQEIARKCQLELDLKDDSN 290 Query: 293 PRFIEKECDDIQKEEEN---------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 P + + + +KA GL+ RL ++ Y++RL++ Sbjct: 291 PPTPPRFKFTKEYATKEGLDFEEDALYFAHKAREGLKKRLEIIDPSQHAT---YQERLEY 347 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 E+ I MKF+GY LIV DFI+ A+++ IPVGPGRGS AGS+ A+ L ITDIDPL++ LL Sbjct: 348 EIKTIVEMKFAGYMLIVWDFIRHARESGIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLL 407 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNP+R+SMPD D DFCQ RR E++ Y+ +KYG VAQ+ITF + AK +RDV R Sbjct: 408 FERFLNPERVSMPDIDTDFCQRRRGEMLDYMVSKYGKYNVAQVITFNKMLAKGVIRDVAR 467 Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523 L MPY + D + KLIPN + +A + + + + ++ E + LE L R Sbjct: 468 VLDMPYKEADEMAKLIPNRLGITLK-EAFELEPKIAMLINTNKTAKQVWEFALNLENLNR 526 Query: 524 HASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAA +V+ +R L P+Y R+ VTQ++MK++E LIKFDFLGLKTL+++ Sbjct: 527 SAGKHAAALVVDSERELWHKTPLYTSERTGGIVTQYSMKYLEAVDLIKFDFLGLKTLSVI 586 Query: 583 QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 +L + + K+D + DD Y + T+GIFQ+ES + + ++P C E Sbjct: 587 DDALKLIEKYAHQKIDFLSVDMDDPSVYQTIQEGNTIGIFQIESGMFQTLNKRLRPSCFE 646 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++L RPGP+++ + + NRK+G E I ++P+L+ T G I+YQEQVMQI Sbjct: 647 DIIAIIALGRPGPMESGMVDDFVNRKHGLEPITYAFDALEPILRPTYGTIVYQEQVMQIV 706 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q + G+SL EAD++RRAMGKK + M + +FI GA K G A ++F+L+ KFA Y Sbjct: 707 QTIGGFSLGEADLIRRAMGKKDAQIMADNRAKFIEGARKRGYEADKAGDLFDLIVKFAGY 766 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA++++QTA++KTHY EF+AA ++ E ++E++ + +A I++ P Sbjct: 767 GFNKSHSAAYAMLTFQTAYLKTHYKHEFMAAMISSECRHIEEVAHYVDEASSMGIEVQRP 826 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 VN V F+V G I + L AIKG G ++E F L+DF S++D Sbjct: 827 HVNVSDVRFRVQEEGGKKHIVFGLEAIKGAGEGPLGTLVEIREKHGAFKDLQDFISKIDF 886 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 K ++R+LE L+ +G+LD GY+R +L++LD I + + +K +FA T Sbjct: 887 SKFSKRILEPLIKSGSLDNLGYNRRTMLENLDAICEEGRRKDKTNAQMRAGLFADA-QTE 945 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGN 993 + L + + + + E +G YFSGHPL+ +K ++ + I + G+ Sbjct: 946 RAHLELTPYEEYDINTLLDFEYECMGIYFSGHPLNEFKDQIKPLKNILKSTDIKRVEIGS 1005 Query: 994 NIRLAAMVVSK--------QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 N+ L ++ ++ G + + + +E F Sbjct: 1006 NVVLVGKILELKRKLGKKSKKPY---GEAVIV----DLSGRFELMLF 1045 >gi|30022680|ref|NP_834311.1| DNA polymerase III DnaE [Bacillus cereus ATCC 14579] gi|29898239|gb|AAP11512.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 1108 Score = 673 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 369/1027 (35%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQ + +SLL+ A ++ ++ + ++AITD N ++ + F + GIQP+ Sbjct: 3 FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG I ++ +VLL GYQ L+++ S + + Sbjct: 63 IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I WL +GLI ++ G G I++ ++ AE+ T++ +FG Y++LQ H Sbjct: 108 ILKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVDRTYQNMFG-HFYMSLQHHA 165 Query: 191 GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D + + +P+VATN+ ++++ D H+ L++V T ++ DRPR Sbjct: 166 IQDELLLQEKLLEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +YLK+ EM ++FS PEA++NT++IA RC + H LP+F + + Sbjct: 226 TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL G + + +RLD ELNVI+RM FS YFLIV DF+++A Sbjct: 282 IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N+I GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRD Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E+IRYV++KYG RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + RE + +R+ EI++++EGL RH S HAAG+++ PL+ V + + Sbjct: 455 DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 +D+ VTQ+ +E+ GL+K DFLGL+ LTLL+ + F+A + ++D+ +P D + Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEK 572 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+G Sbjct: 573 TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 K KI +HP + P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D+ Sbjct: 633 KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++ F+ G +NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF Sbjct: 693 ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 + A ++ + N +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G Sbjct: 753 MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 T ++E K F+ L +FC R+ SK + R LE+ V++G D FG SR L +S+ Sbjct: 813 ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +YA + G K + + + E+ LGFY S +P Sbjct: 873 ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 Y + +++ I + A + R + S + +T+K ++ ++TF + E Sbjct: 920 TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977 Query: 1027 YEANFFP 1033 EA FP Sbjct: 978 MEAVLFP 984 >gi|32491128|ref|NP_871382.1| hypothetical protein WGLp379 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166335|dbj|BAC24525.1| dnaE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 1159 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 407/1046 (38%), Positives = 618/1046 (59%), Gaps = 37/1046 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K+ F+HL++HS YS+++G + I+++ PA+AITD NL+ ++F A Sbjct: 1 MSKT-YFIHLRIHSDYSIIDGLPKIETIINRAKKLNMPALAITDFTNLYGLIKFYIFAKK 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + + + I +L S GY+ LI L+S+ Y Q Sbjct: 60 NGIKPIIGSDFYL---------KKIICGKEEISEITILASNNMGYKNLILLISKAYQFGQ 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I L WL + + GLI+L+GG G I + N+ + + + +KK F +R Y+ Sbjct: 111 TNIGPTINLYWLSKYNS-GLIILSGGIYGEIGKYLIKNNLENIKYCINFYKKYFHNRYYL 169 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + R + + + L+ + +PLVATNN F+ D+ H++ +++ +T + Sbjct: 170 EITRTGKSEEEIYINYALNLSINYNIPLVATNNVRFIFRNDFNVHNIKVSIYQNTTLKNL 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + T + Y+K EM +FSD+PE+LEN++EIA+RC+ +++ ++ Sbjct: 230 KKNNYTDNQYMKCEKEMCDLFSDIPESLENSIEIAKRCNVNIEL-----NKYHLPHFSSG 284 Query: 304 QKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + + NK+ GLE L +I K + + Y RL EL VI +MKF YFLI+ Sbjct: 285 ELSPKKYIINKSYLGLEKKLDFLFPNSIEKNKNKKKYETRLKNELKVINKMKFPSYFLII 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +FI WAKKNNIPVGPGRGSGAGS+ AY+L ITDIDPL F LLFERFLNP+R+SMPDFDI Sbjct: 345 MEFISWAKKNNIPVGPGRGSGAGSLVAYSLNITDIDPLSFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC ++RD VI +V N YG + VAQIITFG + A++ ++DVGR L PY VD++ KLIP Sbjct: 405 DFCMEKRDLVINHVANIYGKKSVAQIITFGKMTARSVIKDVGRVLGFPYRFVDKISKLIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 DP + + + + + +D V +++++S+ LEGL ++ S HA GIVI + ++ Sbjct: 465 LDPGVTLEKS-LNTEHQLIKLYSSDEEVKKIIDMSKNLEGLIKNVSKHAGGIVISPKEIT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS- 599 P+Y D++++ +TQF+ IEK GL+KFDFLGL+TLT++ ++ + ++ K +L Sbjct: 524 NFTPIYYDIKNNTQITQFDKDDIEKIGLVKFDFLGLRTLTIIDWTVKIINKKREKNNLDL 583 Query: 600 ----LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 IP +D +++ LL T+ +FQLES G+R ++ +QPDC EDII+LV+L+RPGP+ Sbjct: 584 IDISKIPLNDIKSFELLKKSKTISVFQLESKGIRDLIKRLQPDCFEDIISLVALFRPGPL 643 Query: 656 DNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + +V + NRK+GKEKI H L++P+LK T G+I+YQEQVM IAQ+L+GYSL Sbjct: 644 KSGMVENFINRKHGKEKIFYPDKNWQHELLEPILKSTYGIILYQEQVMSIAQVLAGYSLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 EAD+LRRAMGKK +EM +Q+ RF +GA KNGI K ++ IF+LL KF+ YGFNKSH+AA Sbjct: 704 EADILRRAMGKKKVKEMSEQRNRFKNGALKNGIDKIFSMKIFDLLEKFSGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++SYQT W+KTHY EF++++M+ +MDN ++I + + I+I+ P +NT F Sbjct: 764 YALLSYQTLWLKTHYATEFMSSAMSADMDNSDRIISLINECKNIGIKILLPDINTCNYHF 823 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 KV D +I Y L AIKG+G ++ + I + + F L D C R D KKL R+ +E L+F Sbjct: 824 KVVDKKIIYGLGAIKGIGLSSIKEIKNQIKKNGNFTDLFDLCLRSDPKKLTRKTIEKLIF 883 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GALD R +++L K+AQ KN+ ++F + + E S Sbjct: 884 SGALDKLNKDRSFNVKNLPYAMKFAQQKIKNKKLGQIDMFNYRLKSKYIFKHFE--SSMQ 941 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQ 1006 + E E+ +LG Y S HP+ Y + + G N + M+ S ++ Sbjct: 942 NFSILEEERNMLGIYLSNHPMKYYLQEFIYYSNRNLIKNINKNSSGKNKNICGMISSVKK 1001 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 T+ G I + + + E F Sbjct: 1002 IYTKSGDIIISLLLEDSSDILEVILF 1027 >gi|313847630|emb|CBY16618.1| putative DNA polymerase III alpha subunit [Chlamydophila psittaci RD1] Length = 1248 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 364/1075 (33%), Positives = 566/1075 (52%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+PII Sbjct: 10 IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 69 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + K+ ++LL GY+ L L S + + RI Sbjct: 70 GCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 126 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + EGLI L+ SG + +A S + EK L ++ LFG+ Y +Q H+ Sbjct: 127 DRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 184 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + + VATN+ ++ +D+ AH+ Sbjct: 185 SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 244 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V + + + ++Y K+ EM +F+D PE + NT+E+A Sbjct: 245 ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEVAD 304 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330 +C+ L + + P ++ D E E LR GL + +A Sbjct: 305 KCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLAHI 364 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGAGS Sbjct: 365 SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 424 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 425 VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 484 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L + S+V+ + K IP + +A+ D E Sbjct: 485 QIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 542 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++ +LEG R+ HAAG++I L+ +P+ S + TQF+MK +E Sbjct: 543 DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 602 Query: 565 KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + ++ + G ++++ +P DD T+ LL T+GIFQ+ Sbjct: 603 SVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 662 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +LK Sbjct: 663 ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 722 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNGI Sbjct: 723 ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGIDA 782 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 783 DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEKVG 842 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K +A +I I+PP +N DF D I +++ AI+G+G I+E P+ Sbjct: 843 KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 902 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S++DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 903 QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 962 Query: 923 HENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ ITL + + + E+ +LG Y + HP+D K IL ++ Sbjct: 963 VMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPRLS 1022 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 + E G IR ++ + + KG R + S+ YE +P Sbjct: 1023 VVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1077 >gi|29839841|ref|NP_828947.1| DNA polymerase III subunit alpha [Chlamydophila caviae GPIC] gi|29834188|gb|AAP04825.1| DNA polymerase III, alpha subunit [Chlamydophila caviae GPIC] Length = 1242 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 360/1075 (33%), Positives = 570/1075 (53%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+PII Sbjct: 4 IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECRQNDIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + K+ ++LL +GY+ L L S + + RI Sbjct: 64 GCEIYVAPTSRFDKKKERKSRVAN--HLILLCKNEQGYRNLCLLSSLAFT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + +EGL+ L+ SG + +A S + EK LL ++ LFGD Y +Q H+ Sbjct: 121 DRELLSQ-HSEGLVCLSACLSGSVAQAALE-SEEALEKDLLWYQNLFGDDFYSEIQLHKM 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + + VATN+ ++ D+ AH+ Sbjct: 179 SEEKIASLGEEWLKHEYHQFIEAQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLAHE 238 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V + + + ++Y K+ EM +F+D PE + NT+E+A Sbjct: 239 ILLNVQIGETIRIAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEVAD 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330 +C+ L + + P ++ + + Q E E LR GL + +A Sbjct: 299 KCNLSLNLSSKHYPIYVPEFLKEKQTYTEEERYAASSTFLRELCEQGLFTKYTAEQLAHI 358 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + ++RL+ E+++I Y LIV D I+WAK N IPVGPGRGSGAGS Sbjct: 359 SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRWAKDNGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L +P S+V+ + K IP + +A+ D E Sbjct: 479 QIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPEM--NTTLAKALETDPHLNELYTN 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++L+++ LEG R+ HAAG++I L+ +P+ S + TQF+MK +E Sbjct: 537 DSEAAQVLDMAMHLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + ++ + G ++++ +P DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + + PD E+IIA+ +LYRPGP+D I + +RK+GKE I HPL++ +LK Sbjct: 657 ESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHGKEIIEYDHPLMESILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M +++ +F A KNGI Sbjct: 717 ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIQQMLQERTKFCERACKNGIDA 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K +A +I I+PP +N +F D I +++ AI+G+G I+E P+ Sbjct: 837 KLIHEAHSMDICILPPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKHGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S++DF R D KK+ ++ E+L+ AG D F R +L+ + +K Sbjct: 897 QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEKKEAATG 956 Query: 923 HENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ ++ L + + + E+ +LG Y + HP+D K IL ++ Sbjct: 957 VMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPQLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 + E G+ IR ++ + + KG R + ++ YE +P Sbjct: 1017 VVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1071 >gi|329942392|ref|ZP_08291202.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10] gi|325506690|gb|ADZ18328.1| DNA polymerase III subunit alpha [Chlamydophila psittaci 6BC] gi|328815302|gb|EGF85290.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10] gi|328914265|gb|AEB55098.1| DNA polymerase III, alpha subunit, form 1 [Chlamydophila psittaci 6BC] Length = 1242 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 364/1075 (33%), Positives = 566/1075 (52%), Gaps = 60/1075 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+PII Sbjct: 4 IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + K+ ++LL GY+ L L S + + RI Sbjct: 64 GCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + EGLI L+ SG + +A S + EK L ++ LFG+ Y +Q H+ Sbjct: 121 DRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V+ + + VATN+ ++ +D+ AH+ Sbjct: 179 SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 238 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V + + + ++Y K+ EM +F+D PE + NT+E+A Sbjct: 239 ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEVAD 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330 +C+ L + + P ++ D E E LR GL + +A Sbjct: 299 KCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLAHI 358 Query: 331 ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384 + ++RL+ E+++I Y LIV D I WAK N IPVGPGRGSGAGS Sbjct: 359 SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 418 Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444 V + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G + VA Sbjct: 419 VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478 Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504 QIITFG+++AK A++DVGR L + S+V+ + K IP + +A+ D E Sbjct: 479 QIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 536 Query: 505 DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564 D ++++++ +LEG R+ HAAG++I L+ +P+ S + TQF+MK +E Sbjct: 537 DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 596 Query: 565 KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623 G++K DFLGLKTLT + ++ + G ++++ +P DD T+ LL T+GIFQ+ Sbjct: 597 SVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 656 Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 ES GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPL++ +LK Sbjct: 657 ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET G+++YQEQVMQIA L+ YSL E DVLRRAMGKK ++M K++ RF A KNGI Sbjct: 717 ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGIDA 776 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ Sbjct: 777 DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEKVG 836 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862 K +A +I I+PP +N DF D I +++ AI+G+G I+E P+ Sbjct: 837 KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 896 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S++DF R D KK+ ++ E+L+ AG D F R +L+++ +K Sbjct: 897 QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 956 Query: 923 HENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 F+ ITL + + + E+ +LG Y + HP+D K IL ++ Sbjct: 957 VMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPRLS 1016 Query: 980 IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 + E G IR ++ + + KG R + S+ YE +P Sbjct: 1017 VVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1071 >gi|328955785|ref|YP_004373118.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2] gi|328456109|gb|AEB07303.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2] Length = 1274 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 341/1147 (29%), Positives = 543/1147 (47%), Gaps = 133/1147 (11%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58 +FVHL HS YS+L+GA + +++++ PA+A+TD ++ + Sbjct: 2 AFVHLHNHSEYSMLDGATRIEDMVERAVELGMPAVALTDHGYMYGIPQLALACNKVNHDM 61 Query: 59 -------SQKA--------------------------------CAAG----------IQP 69 A G I+P Sbjct: 62 PEYRVWSHDAAFLAKGRGDELEDPDARSDPRGHAQHLRDMQAWREHGSLESVRPRPLIKP 121 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I GC++ + L ++ P + ++LL GY L++LVS + Sbjct: 122 IFGCEVYFTPDETLARDHK-----PELYHLILLARNEVGYVNLMQLVSEA-AVSGFYYKP 175 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 R+ L L+ EG+I + +G I R +++ A TF+ LF Y+ +Q Sbjct: 176 RVTLDNLRR-HREGIIGSSACLAGVIPRCIDEGNTEQAIIWAETFRDLFEPGSFYIEIQE 234 Query: 189 HRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 H D Q++++A + ++ATN+ +L+ D D+++ + + + Sbjct: 235 HGITTDAGMTDEQLSHQLIEIAARVGVKVIATNDFHYLTRADAPVQDLMLCIGTNAKMDD 294 Query: 243 KDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +R R+ + EM ++F PEAL+NTVE+A RC L + ILPRF Sbjct: 295 PNRMRMQGSEFYMKSEEEMRALFPYCPEALDNTVELAERCEVELDWDSIILPRFP---GL 351 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D + E++ R + GL R + + +R ++E VI F+ YFLIVA Sbjct: 352 DEGETHESQFRRECERGLARRYGDDWREREISGVNIAERFEYEYRVICDKGFAAYFLIVA 411 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D+++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R MPD D+D Sbjct: 412 DYVRWAKENGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERAEMPDIDMD 471 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR EV+ YV+ +YG ++V +IT+ +++AK A+ D R L P S RL K+I + Sbjct: 472 FDDERRLEVVEYVRGRYGADKVTHVITYSTIKAKQAINDAARVLDYPVSTGQRLSKMISS 531 Query: 482 DPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 P+ +S + F +A D R+++ + +EGL R HA ++I Sbjct: 532 APSVKLSQVLKQQKKKEELYNPDFADAYRGDDDARRIIDAALSIEGLTRGEGVHACAVLI 591 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593 P+++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + Sbjct: 592 CRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANILANFG 651 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VD+ IPFDD + L+ T G+FQ+ES+GM ++ M+P + ++AL++LYRPG Sbjct: 652 TEVDVDAIPFDDPAIFELMAAGRTAGVFQVESAGMTATIKNMRPSEFKHVVALIALYRPG 711 Query: 654 PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + Y +R +G++K+V + P+L+ET G I+YQEQVMQI+ +SG++ E+D Sbjct: 712 PLGAGMVADYIDRMHGRKKVVYYDNRLAPLLEETYGTIVYQEQVMQISMHMSGFTAGESD 771 Query: 712 VLRRAMGK------------KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 +R+A+ K + ++ +++GA +N S+ IA I+ + KFA+Y Sbjct: 772 KVRKAVAKKHIELMETVVQHWDDGTDETMQDHWMNGAVRNDFSRAIAEQIWADVLKFAEY 831 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+A YA++ QTAW+K HYP E++AA +T EKI + R I+++PP Sbjct: 832 AFNKSHSAGYAILVMQTAWLKAHYPYEYMAAVLTSFTGKTEKIVHYISACRHEGIEVLPP 891 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878 +N DF I + LA I+GVG AR I+E F +L D+ R+D N Sbjct: 892 DINESNKDFTAVHEGIRFGLAGIRGVGEGVARTIIEERERGGAFKNLHDYMERLDPACAN 951 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWVEKNRTNKHENIF----AH 929 RRV E+L+ AGA D G+ R QL+ +D I K R + F Sbjct: 952 RRVCEALIKAGAFDASGFPRRQLMGFIDKNNPENILDAVVRRNKTRATGQVSFFDVLGDV 1011 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986 E F K+ + + E+ VLG Y S HPL Y+ L + + Sbjct: 1012 EGSGFEVKVPEPDGQEWDRHTKLAQEREVLGIYVSDHPLRPYECALARARDYALSQIEVG 1071 Query: 987 --------------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 A A MV ++ T+ G + V + E Sbjct: 1072 EEIDAALGGDAPTASAPAAGQAIPEDRAFWFAGMVADVSKRVTKNGDAMAIVRLEDMEGE 1131 Query: 1027 YEANFFP 1033 FP Sbjct: 1132 ATVVVFP 1138 >gi|225163584|ref|ZP_03725893.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801819|gb|EEG20106.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 1183 Score = 671 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 346/968 (35%), Positives = 521/968 (53%), Gaps = 46/968 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F+HL VH+ YSLL+G+ ++ ++ + Q AIA+TD N+F A+ F +A Sbjct: 1 MPSPSDFIHLHVHTDYSLLDGSCRVDRLMSRAKELGQTAIALTDHGNMFGAISFYNEAKK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P+IGC+ I L+ T + + + + +L EGYQ L++LVS +L Sbjct: 61 AGIKPLIGCEFYIAPGSRLEKTGKSEDGK-SYYHLGVLARNLEGYQNLLKLVSDAHLKG- 118 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 R L L ++GLI TG + + + + + A + ++FG + + Sbjct: 119 FYYKPRADLETLARY-SKGLIGFTGCLASEVCQNLMHDRFEDARAACARYVEIFGRENYF 177 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V +Q H ++ +++L L ++ATN+ ++ ED HD L+ + +++ Sbjct: 178 VEIQDHGIPEQRKIIPGLLKLGEEFGLKVIATNDVHYIRSEDANPHDALLCIQTGAKLAE 237 Query: 243 KDRPRVTPDHYLKNR--SEMVSIFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEK 298 ++R + + +LPE+L NT+ +A C + PR+ Sbjct: 238 ENRMKFDTQEFYLKSRDEMFKIFGRELPESLTNTLAVAEMCDLSIPFPKGSERYPRYPLP 297 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--------------------AQDYR 338 + L V GL+ R DY Sbjct: 298 AEIKARYSASQYLHQLCVEGLKHRYGHDHDPVALRPVVAERLAKLHNLAPGQKPAPPDYT 357 Query: 339 Q---------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389 + R+ +E +I F YFL+V DFI WAK++ IPVGPGRGSGAG + AY Sbjct: 358 ELAPEEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHTIPVGPGRGSGAGCLVAYL 417 Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449 L IT+IDP+RF LLFERFLNP+R+S PDFDIDFC RR+EVI YV+ KYG++ VA IIT+ Sbjct: 418 LGITNIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANIITY 477 Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509 G+L AK A+RD+ R + ++ DR+ K+IP + + +I R +P Sbjct: 478 GTLGAKMAIRDIARVHDLAFADADRISKMIPEEIGISLE-DSIKKSEELRTEISRNPMTK 536 Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569 R+++ + +EGL R+ HAAGI+I D+PL VP+ + QF+M I K GL+ Sbjct: 537 RIIDTALVVEGLVRNTGKHAAGIIITDQPLDDFVPL--TSQEGDVTVQFDMGAITKLGLL 594 Query: 570 KFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626 K DFLGLKTLT++ ++D + D+ IP DD +TY LL T+G+FQLES Sbjct: 595 KMDFLGLKTLTIISDAVDNVRHTVPGQKDFDIDTIPLDDPKTYELLNAGKTVGVFQLESP 654 Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686 GM+ A + ++DI A+ +LYRPGP+ I Y K I H L++P+LKET Sbjct: 655 GMQNASRQVGISTVDDINAISALYRPGPMQFIPDYARGKKDPANITYPHKLLEPVLKETF 714 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTI 745 G+I+YQEQVM+ A++++GY+L AD+LRRAMGKK E M +++ +F+SGA + I + Sbjct: 715 GIIVYQEQVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERVKFVSGAKEHHNIDEKK 774 Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805 A IF+LL KFA YGFNKSH+AAYAV++YQTA++K +YPV+F+AA +T E+ N EK+ F Sbjct: 775 ANEIFDLLNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNAEKVAHF 834 Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864 +A + ++ P +N +F ++I + LA IKGVG ++ I+ A+ P+ Sbjct: 835 IAEAEAMGLTVLGPDINESGANFTPVGDKIRFGLAGIKGVGEGASQKIIAEREANGPYKD 894 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 +DF RVD+K N+RVLE L GA D G SR + +D A K+R Sbjct: 895 FDDFTLRVDNKSANKRVLEHLAKTGAFDFSGESRKAIFARVDAALASAVLQAKDRAAGQS 954 Query: 925 NIFAHEKG 932 F + Sbjct: 955 GFFDLLEA 962 >gi|319779485|ref|YP_004130398.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9] gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9] Length = 1178 Score = 671 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 384/1068 (35%), Positives = 601/1068 (56%), Gaps = 57/1068 (5%) Query: 5 LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + FVHL+ H+ +S+ +G + + ++ K+ + PAIAI+D NLF ++F + A Sbjct: 1 MTTLNPKQFVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGA 60 Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 GI+PI C +D Q I ++ + +GY RL E++S+++L Sbjct: 61 RKLGIKPIAACDFVLDTQG----------VSGEAHRIEIIATNNKGYLRLCEIISKVWLE 110 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++G R+ WL + GLI L+GG G I +A F N A K L + + F D Sbjct: 111 NEGLDVARLKKEWLTDTS--GLIALSGGIYGDIGQALF-NKPIEAPKLLEDWVERFPDGF 167 Query: 183 YVNLQRHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 Y+ LQR R S+ VQLA +P+VAT+ FL + +++HDV Sbjct: 168 YIELQRELPDQHGRYSKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVR 227 Query: 232 MAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 + +A +S R R + + Y + +M +F D+P A+ NT EIA+RC+ L++ P Sbjct: 228 VCIAEGEFLSDPKRKQRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKP 287 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 LP F E + E L + +A L + A Y+ RL+ E+ VI Sbjct: 288 QLPIFPTPEGVSVD-EYFAYLAKEGLAKRLEFLFPDEAIRKEKAPIYQARLNKEIEVIES 346 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 M F+GYFLIV DFI W K N +PVGPGRGSGAGS+ AY+L IT +DPL++ LLFERFLNP Sbjct: 347 MGFTGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNP 406 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R+SMPDFD+DFCQD R++VI YV +KYG + V+QI+TFG+L A+A ++DVGR +Q+PY+ Sbjct: 407 ERVSMPDFDVDFCQDNREKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYA 466 Query: 471 QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADP----SVDRLLEISQKLEGLYRHA 525 D L KLIPN P P + +A+ + ++ + +++ S K+EGL R+ Sbjct: 467 VCDELSKLIPNSPVDPYTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNT 526 Query: 526 STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585 THA G++I L+ P++R S V+Q++ IE GL+KFDFLGL+ LT+L + Sbjct: 527 GTHAGGVLIAPGKLTDFTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWT 586 Query: 586 LDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + ++ + DL +P DD TY LL+ T +FQLES GM+ L ++P ED Sbjct: 587 VRYVKEFNEAQKDFDLDRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFED 646 Query: 643 IIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 I+A+++LYRPGP+++ + + +RK+G+ K+ H ++ +LK T GVI+YQEQVM I+Q Sbjct: 647 IVAVLALYRPGPLNSGMVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQ 706 Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760 ++ GYSL AD+LRRAMGKK EEM +Q+E F GA + G +A N+F+L+ FA YG Sbjct: 707 IIGGYSLGGADILRRAMGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYG 766 Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820 FNKSH+ AYA+I+YQTAW+K ++P EF+AA+MT +M++ +K++ F +D ++++ P+ Sbjct: 767 FNKSHSVAYALIAYQTAWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHNGLKLLAPN 826 Query: 821 VNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869 +NT F+ + I Y L AIKGVG I++A F SL+D Sbjct: 827 INTSYYRFEPVKDEQSNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLI 886 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 RVD + +R +E+L+ +GA+D +R L+ +D+ Y + + ++FA Sbjct: 887 KRVDRTIVTKRSIEALIKSGAMDVLDKNRALLMAMVDDC--YIAANQAEESKDQWDLFAD 944 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 ++G + E + E+ +GFYFS V++ +RK + + Sbjct: 945 DEGGAIEVSVPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKFIKTPIKNLGS- 1003 Query: 990 IRGNNIRLAAMVVSKQQKKTR---KG-SRIGWVTFSEPAKEYEANFFP 1033 + +A ++ + + ++ KG +R+ ++T + ++ E P Sbjct: 1004 -NQGALSIAGVLTNLRINISKNSDKGDNRLIFLTLDDGSETVEVFCPP 1050 >gi|326387647|ref|ZP_08209253.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326207693|gb|EGD58504.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 1196 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 447/1065 (41%), Positives = 630/1065 (59%), Gaps = 40/1065 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L+V SSY++L+GA+ I A PAIAITD N L+ ++ F++ Sbjct: 1 MPHAP-FVSLRVFSSYTMLDGAVDPKVIAKTAAERGFPAIAITDRNGLYGSVAFAKACKD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QP+IG L + + T PT+ + L + GY + LVSR +L Sbjct: 60 VGVQPVIGTMLAVARPERGGATTTFGPQAPTIDWLALYAQDSTGYDNICHLVSRAHLDRP 119 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + + L T+GL+ L+ G G I R AE LF DR Y+ Sbjct: 120 LEFAPHVRVEDLA-GHTDGLLCLSAGGEGAITRLLAEGQQDAAEAYADEIAGLFPDRFYI 178 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + E ++ LAY + PLVATN + F Y AHD ++ +A ST V Sbjct: 179 ELARRGDPVEERAEDALIDLAYARDWPLVATNPACFAERAFYPAHDAMLCIASSTHVDSA 238 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--------- 294 DRPR + + ++K M +F D+PEAL NT+ +A+RC+ + PILP Sbjct: 239 DRPRSSVEWWIKPAPVMEELFKDIPEALANTLVVAQRCAAMPPKRKPILPSLAGDKEGEA 298 Query: 295 -------------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YR 338 + EE + L G V A++ + YR Sbjct: 299 RMCAADSRTGLVARLMPYYPADTHEELSALLTMGPEGEPVEAEFPALSAAGIFGEVCNYR 358 Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398 RL+FE+ +I RM F GYFLIVADFI+WAK+++IPVGPGRGSGAGS+ A+ALTITD+DP+ Sbjct: 359 HRLEFEIGIINRMGFGGYFLIVADFIKWAKEHSIPVGPGRGSGAGSLVAWALTITDLDPI 418 Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458 R LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A L Sbjct: 419 RLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAVL 478 Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQK 517 RD GR LQM Y QVDRLCK++PN P P +A+ + + DP V RL++++ + Sbjct: 479 RDTGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVRRLIDLAMQ 538 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLK Sbjct: 539 LEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLK 598 Query: 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 TL++L+K++D L +RG+++DLS + +DD + Y LL + T+G+FQLES GMR+ L ++P Sbjct: 599 TLSVLRKAVDLLGKRGIQIDLSTLGWDDAQVYRLLQSGDTVGVFQLESEGMRRTLAAVKP 658 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 DIIALVSLYRPGP+DNI ++ RKNG E+I H + +L ET G+ +YQEQVMQ Sbjct: 659 TNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEEIEYPHDKLAGILSETYGIFVYQEQVMQ 718 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT-IAVNIFELLAKF 756 AQ+L+GYSL +AD+LRRAMGKKI+ EMD+Q+ RF++G + A +F+L+ KF Sbjct: 719 AAQILAGYSLGDADLLRRAMGKKIQAEMDQQRARFVAGCKEVSQIDAGKANELFDLIDKF 778 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M +M EK+ F D R+ + Sbjct: 779 AGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLNIFVDDMRRNGFAL 838 Query: 817 MPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 P +N +F V + Y+LA ++ VG I+ A+ PF +L++ R Sbjct: 839 AGPDINRSVAEFTVERTEESYAVRYALAGLRNVGEKAMEAIVAEREANGPFQTLDELFRR 898 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 + + +NRR LE+L GALDC +R +L+ + + + A + RT+ +F + Sbjct: 899 LPAGAMNRRQLEALAAGGALDCLEPNRAKLIANAELLMAVADEASRARTSGQGGLFGGD- 957 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---- 987 L + + + + E+ GFYF+ HP++ Y+ I G + Y + Sbjct: 958 DHVEQATRLVETKPWSRAEQMAAERENFGFYFAAHPVEEYRAISSANGARTYASLMMGGG 1017 Query: 988 ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +AA+V Q++KT++G FS+ + + A F Sbjct: 1018 TATGRTGAVMAALVEGVQKRKTKRGKDFVMADFSDKSGLFSACCF 1062 >gi|56477932|ref|YP_159521.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1] gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1] Length = 1164 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 409/1061 (38%), Positives = 599/1061 (56%), Gaps = 64/1061 (6%) Query: 5 LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAA-----------DQQPAIAITDTNN 51 + S P F+HL++HS YS+ +G I+ A I+D N Sbjct: 1 MTASHEPCFIHLRLHSEYSISDG------IVQIDQAIARAAADAMPALG-----ISDLAN 49 Query: 52 LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111 LF ++F + A G++P++G I +L+ +GY + Sbjct: 50 LFGMVKFYKGARGKGMKPVVGVDTWITND----------ADRDKPFRALLICRNRKGYGQ 99 Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171 L EL++R YL ++ + + W + L+ L+G G I +A + VAE+ Sbjct: 100 LCELLTRAYLDNKYRSRAEMHRQWFADGAASDLLCLSGAMGGDIGQALVNGNPDVAERLA 159 Query: 172 LTFKKLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + +LF D Y+ LQR H G + Y Q VQLA LP+VAT+ FL ED++AH+ Sbjct: 160 AEWAQLFPDAFYIELQRAGHPGTEAYI-RQAVQLAGKLGLPVVATHPVQFLEPEDFKAHE 218 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A V++ K RPR T + Y K++ EM ++F+D+PEALEN+VEIARRCS +Q+ Sbjct: 219 ARVCIAQGYVLADKRRPRDFTEEQYFKSQDEMCALFADIPEALENSVEIARRCSLTVQLG 278 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFEL 345 LP+F E + L +A +GLEVRLA+ A+ + Y RL FE Sbjct: 279 KNFLPQFPTPEGM----TLDEFLVAEAKSGLEVRLAELYPAEAERERQRRTYEDRLKFET 334 Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405 + I +M F GYFLIVADFI WAK+N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFE Sbjct: 335 DTIVQMGFPGYFLIVADFINWAKENGVPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFE 394 Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465 RFLNP+R+SMPDFDIDFCQD R VI YV+++YG E V+QI TFG++ +KA +RDVGR L Sbjct: 395 RFLNPERVSMPDFDIDFCQDNRYRVIEYVRSRYGKEAVSQIATFGTMASKAVVRDVGRVL 454 Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGL 521 +PY DRL KLIP + A PVSL + + SV L +++ LEGL Sbjct: 455 DLPYGLCDRLSKLIPIEGAKPVSLAKAYEMESQIGEMMKDGNDGESVQELWSLAEPLEGL 514 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 R+ HA G++I L+ P+Y + PV+QF+ +E GL+KFDFLGL+ LT Sbjct: 515 SRNVGMHAGGVLIAPGKLTDFCPLYIADGDEATPVSQFDKDDVEAVGLVKFDFLGLRNLT 574 Query: 581 LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +++ +++++ + G K DL+ +PF D Y +L T IFQ+ES GM++ L+ + PD Sbjct: 575 IIELAVEYVERLTGEKPDLAALPFTDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDR 634 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697 EDIIA+++LYRPGP+ + +V + K ++I HP + P L T GVI+YQEQVMQ Sbjct: 635 FEDIIAVLALYRPGPLGSGMVDDFILRKKGQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQ 694 Query: 698 IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757 I+Q++ GY+L AD+LRRAMGKK EEM K +E +GA + G +A +F+L+ KFA Sbjct: 695 ISQIIGGYTLGGADMLRRAMGKKKAEEMAKHRETIAAGAKQKGYDPALAEQLFDLMTKFA 754 Query: 758 DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817 +YGFNKSH AAYAV++Y TAW+K H+ F+AA+M+ ++DN + I+ F +DA + I+ Sbjct: 755 EYGFNKSHTAAYAVVTYHTAWLKAHHCAAFMAATMSADLDNTDTIRIFFEDAVANGVTIL 814 Query: 818 PPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875 PP VN F D I Y L A+KG G R I+ A A F L DFC+RVD + Sbjct: 815 PPDVNASDFRFVPTDRKTIRYGLGAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRR 874 Query: 876 KLNRRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +NRRV+E+L+ AGA D R +LL ++ + A+ N +F Sbjct: 875 AVNRRVIEALIRAGAFDLIEPSGTADRARLLATVGLAMEAAEQAAANAMQG--GLFDLIP 932 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + + R + E+ +GF+ SGHP + ++ +R+ + E + Sbjct: 933 EAAGAAPEYVRARPWSERERLKEEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPSRD 992 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + LA +V+ + K T +G + +V + + E + F Sbjct: 993 --LLMLAGVVMDVRTKMTGRGK-MAFVVLDDGSHVREVSVF 1030 >gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans CJ2] gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 1173 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 411/1045 (39%), Positives = 599/1045 (57%), Gaps = 36/1045 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ +S+++G ++ I+ AADQQPA+AITD +NLF ++F ++ G++P+ Sbjct: 5 FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ GK ++LLV ++GY L EL++R + + + Sbjct: 65 IGADIWLE--------APGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAV 116 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L WLQE+ EGLI L+G G + +A S A + L +F R Y+ LQR Sbjct: 117 VKLQWLQEL-NEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRSG 175 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D + VQLA +LP+VAT+ FL+ +DYEAH+ + ++ ++ R R Sbjct: 176 HPEDERHVTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRKF 235 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + Y K+ +M ++F+D+P AL NTVEIA+RCS L++ P+LP F E + + E Sbjct: 236 TREQYFKSADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPPE 295 Query: 309 NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + R+ + GLE L + +Y RL+FE+N I +M F GYFLIV DFIQ Sbjct: 296 DYFRHTSFEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFIQ 355 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 WAK N PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ Sbjct: 356 WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQS 415 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RD VI YV++KYGH V+QI+TFG++ A+AA+RDVGR L PY D + KLIPN P Sbjct: 416 NRDRVIDYVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 475 Query: 486 PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 V+ + A+ + + + V LL++++KLEGL R+ HA G Sbjct: 476 AVTLQLVPADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAGG 535 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I L+ P+Y S V+QF+ +E GL+KFDFLGL TLT+L+ + +F+ Sbjct: 536 VLIAPGKLTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIA 595 Query: 592 RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 R +P DD Y L T +FQ ES GM++ L+ +PD +ED+IA+ + Sbjct: 596 RYPAQKDFKFEDLPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIAMNA 655 Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 LYRPGP+D I Y RK GKE P + PML+ET G+++YQEQVMQ AQ+L GYSL Sbjct: 656 LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGYSLG 715 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK ++EM + +E F GA NG+++ A +F+L+ KFA YGFNKSH+AA Sbjct: 716 GADMLRRAMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSHSAA 775 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA+++Y TAW+K H+P EF AA+MT+EMD+ +K+K DA++ + P +N F Sbjct: 776 YALLAYHTAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQKMGLSFEVPDINQGDYRF 835 Query: 829 K-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886 + + + Y L AIKG G I+ A + PF SL DFC RVD K+N+R +E+L+ Sbjct: 836 EPITAKSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVEALI 895 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 GA D +R +LL S + +A + N + + + L + + Sbjct: 896 KGGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEMPMF 955 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 R E+ +GFY SGH D + +R+ + E+ + LA +V + Sbjct: 956 GVKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIEDMSESRDSQ--LLAGIVTDLRI 1013 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 +G I + + E + Sbjct: 1014 INGNRGKLIIF-KLDDKTDVLEVSV 1037 >gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 1172 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 399/1050 (38%), Positives = 600/1050 (57%), Gaps = 43/1050 (4%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 P F+HL++H+ YS+ +G + ++ + + AAD PA+ I+D NLF ++F + A Sbjct: 8 PHEPRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGK 67 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++PIIG I Q + ++L+ + +GY +L EL+++ YL ++ Sbjct: 68 GVKPIIGVDAWI----------QNEAERDKPYRVLLICKSRKGYGQLCELLTQAYLENKY 117 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + W + + L+ L+G G + +A + +AE+ + +LF Y+ Sbjct: 118 RGRAEMRREWFENGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIE 177 Query: 186 LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR H G + Y + Q+A +LP+VAT+ FL+ +D++AH+ + +A V++ K Sbjct: 178 IQRAGHPGTETYIRHAL-QIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADK 236 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR T YLK++ EM ++F+D+P+ALEN VEIA+RCS +Q+ LP F + Sbjct: 237 RRPRDFTEQQYLKSQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGM- 295 Query: 303 IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 ++ L +A GLE +L + Y +RL FE + I +M F GYFLI Sbjct: 296 ---TLDDFLVQEAKKGLEERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLI 352 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 VADFIQW K N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFD Sbjct: 353 VADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFD 412 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 IDFCQD R VI YV+ +YG + V+QI TFG+L +KA +RDVGR L MPY DRL KL+ Sbjct: 413 IDFCQDNRYRVIEYVRERYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLV 472 Query: 480 PNDPAHPVS-LQAIADDSRFREAR---LADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P + A PVS +A + + E +V L +++Q LEGL R HA G++I Sbjct: 473 PIEGAKPVSLARAYEMEPQIGEMMKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIA 532 Query: 536 DRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 L+ P+Y D PV+QF+ +E GL+KFDFLGL+ LT+++ +LD++ + G Sbjct: 533 PGKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTG 592 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 +VDL + F D Y +L T IFQ+ES GM++ L+ + PD EDIIA+++LYRPG Sbjct: 593 ERVDLMSLGFQDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPG 652 Query: 654 PIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 P+ + +V + K ++I HP + L+ T GVI+YQEQVMQI+Q++ GY+L AD Sbjct: 653 PLGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGAD 712 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKK EEM K + GA + G +A +F+L+ KFA+YGFNKSH AAYAV Sbjct: 713 MLRRAMGKKKPEEMAKHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAV 772 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ++Y TAW+K H+ F+AA+M+ ++DN + +K F +D I I+PP VN F Sbjct: 773 VTYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFFEDTLANKIAILPPDVNESDYRFVPV 832 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADK----PFDSLEDFCSRVDSKKLNRRVLESLV 886 D I Y L A+KGVG R I+ A A P+ L DFC RVD + +NRRV+E+L+ Sbjct: 833 DRKTIRYGLGAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALI 892 Query: 887 FAGALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 AGA+D G R Q+L ++ + A+ N +F + Sbjct: 893 RAGAMDTLEGHRGRDRAQVLATVPLAMEAAEQAAANALQG--GLFDLVPEAAGAALEFAD 950 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 R + E+ +GF+ SGHP + +KP +R+ + + + + +A +V+ Sbjct: 951 VRPWTERERLKEEKTAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRD--LVMMAGVVM 1008 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + K +G + +V + E + Sbjct: 1009 EARVKMGNRGKMM-FVQIDDGTTPREVAVY 1037 >gi|194333751|ref|YP_002015611.1| DNA polymerase III subunit alpha [Prosthecochloris aestuarii DSM 271] gi|194311569|gb|ACF45964.1| DNA polymerase III, alpha subunit [Prosthecochloris aestuarii DSM 271] Length = 1190 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 365/1075 (33%), Positives = 564/1075 (52%), Gaps = 61/1075 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL H+ YS+ + + ++A+TD + +F+ E A Sbjct: 1 MSNI-DFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASD 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++ IIG ++ + L+ PS++LLV EGY+ L L+SR Sbjct: 60 AGVKLIIGSEVYL-----LEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGF 114 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + S L+E GLI L+G +G I RA + A + +FGD Y+ Sbjct: 115 VNATPHVDSSLLKEYHA-GLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYL 173 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242 LQRH +D S + LA H + LVATNN +L ++D + ++A+ + S Sbjct: 174 ELQRHFATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSS 233 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +HY K+ EM S+FS+ L NT IA +CS++ P LP F+ E Sbjct: 234 NLQCLPNSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEGF- 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +E LR+ G + A ++G Q R++ EL VI M FS YFLIV+D Sbjct: 293 --SDEAEYLRHLTYEGAREKYA-DPESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSD 349 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 I +++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF Sbjct: 350 LIAASRRLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDF 409 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 + V+ Y +KYG + VA+++ G+L A+AA+RD GR L++P +VDRL KL+P+ Sbjct: 410 TPVGKQRVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSK 469 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + Q + + + RE + L++ + LEG R+ S HA +VI D PL + Sbjct: 470 PGTTL-QQGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQ 528 Query: 543 VPMY---------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 VP+Y + VTQF+ WIE AGL+K D+LG Sbjct: 529 VPLYVSNKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLG 588 Query: 576 LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 L+TL ++ ++L + +R ++L +P D+ + + + GIFQ ES GM+ + Sbjct: 589 LETLAVIDETLHLIKKRHAEVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQ 648 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLKETQ 686 +QP I DIIA+ +LYRPG ++ V + +RK+ +E I +HP+++ +LKET Sbjct: 649 LQPTQIGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDYMHPMLEEILKETY 708 Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746 GVI+YQEQVMQI+Q++ G+SL++AD LR+AMGKK E M K K F+ GA G+ +A Sbjct: 709 GVIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKLA 768 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 IF+L+A+FA YGFNKSH+AAY V++Y TA++K HYP EF+ A + E+ + ++K Sbjct: 769 NRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHLT 828 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIM--EASADK 860 +AR FNI I+PP +NT F + D I L+AIK VG AR ++ K Sbjct: 829 DEARSFNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRKK 887 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + +L D + VD + +NR+ LE L+ AGALD +R +L+ ++D K+ Q ++ T Sbjct: 888 EYVNLFDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSVT 947 Query: 921 NKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 F+ + S + + E++++GFY S HPLD ++ Sbjct: 948 LGQCGFFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRRDWEA 1007 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++ +VVS + + RKG+++ + + + + + F Sbjct: 1008 FANLHL-DARNVQPSRQYKIIGVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTVF 1061 >gi|71065735|ref|YP_264462.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4] gi|71038720|gb|AAZ19028.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4] Length = 1247 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 388/1066 (36%), Positives = 602/1066 (56%), Gaps = 72/1066 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YS+ + + + ++ AAD Q A+A+TD +NL++ ++F + AGI+P Sbjct: 2 AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125 IIG ++ ++ +D + LL EGYQ + +VS + + Sbjct: 62 IIGSEVIMENED---------------TRLTLLAMDNEGYQNITRIVSLGFTEGRADPVN 106 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I S + E G G+I+L + +A + + A++ + ++ F DRLY Sbjct: 107 HGTPVIKRSHILEHGA-GVIVLF-TEKSDVGQALVGSMPEKADELITEWQASFDDRLYFA 164 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++R +R + + H +P++A N+ FL ++D++AH+ + +A S V++ ++ Sbjct: 165 IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + YLK +++M +F+D+P+ ++NT+ +A RC+ L + +LP F E + Sbjct: 225 RPQTYSDAQYLKTQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGE-- 282 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ R ++ GLE RL + Q Y +RL++EL VI M F GYF Sbjct: 283 --TTESFFRLESQRGLENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFPGYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD Sbjct: 341 LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC + RD VI YV YG E V+QIITFG++ AKA +RDV RA Y ++ K Sbjct: 401 FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532 LIP P +S QA+ + + ++ ++D + E++ KLEG+ R+ HA G+ Sbjct: 461 LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ +++ + +R Sbjct: 520 LIAPHKITDFSAIYCDD-EGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKR 578 Query: 593 GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 K L +P DD + Y LL T +FQLES GM++ L +QP IED+IA+ Sbjct: 579 RAKEGKEALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +LYRPGP+D +V Y +RK+G+E+++ HP ++P+L+ T GVI+YQEQVMQI+Q+++GY Sbjct: 639 ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQ++ F++GA+ GI + + +F+L+ KFA YGFN+SH Sbjct: 699 SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824 +AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ + ++ PSVN Sbjct: 759 SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRS 818 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882 F I Y L AIKGVG I+EA + PF L DFC RVD KK+N+R L Sbjct: 819 EWHFVADTPTNIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTL 878 Query: 883 ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 E L+ AG D F + R L+ L + + A+ +NR ++F Sbjct: 879 EGLINAGCFDDFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938 Query: 930 EKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEES 986 G + L R + E+ LG Y +GHP+D Y+ L++ ++ Sbjct: 939 MDGVVA-APPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKL 997 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T + A +++ TR +T + E + + Sbjct: 998 ADTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038 >gi|89898738|ref|YP_515848.1| DNA polymerase III subunit alpha [Chlamydophila felis Fe/C-56] gi|89332110|dbj|BAE81703.1| DNA polymerase III alpha subunit [Chlamydophila felis Fe/C-56] Length = 1241 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 358/1074 (33%), Positives = 563/1074 (52%), Gaps = 59/1074 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 + L HS YS+L+ S+ + + K Q P++A+TD NL+ A+EF ++ I+PII Sbjct: 4 IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECYQQDIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC++ + + K+ ++LL +GY+ L L S + + RI Sbjct: 64 GCEVYVAPSSRFDKKKEKKSRVAN--HLILLCKNEQGYRNLCLLSSLAFT-EGFYYFPRI 120 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L + +EGL+ L+ SG + +A S + EK L ++ LFG+ Y +Q H+ Sbjct: 121 DRELLSQY-SEGLVCLSACLSGSVAQAALE-SEEALEKDLRWYQSLFGEDFYSEVQLHKM 178 Query: 192 YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229 + V++ + + VATN+ ++ ED+ AH+ Sbjct: 179 SEEKIASLGEEWLKHEYHQFIETQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLAHE 238 Query: 230 VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +L+ V + + + ++Y K+ EM ++F+D PE + NT+E+A Sbjct: 239 ILLNVQLGETIRIAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEVAD 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGA---- 327 +C+ L P ++ + + Q E E LR GL Sbjct: 299 KCNLKLDFSVKHYPIYVPEFLKEKQTYTEEERYTASSAFLRELCEKGLLKYTPDKLAHIS 358 Query: 328 --IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 + ++R++ E+++I Y LIV D I WAK + IPVGPGRGSGAGSV Sbjct: 359 KKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHGIPVGPGRGSGAGSV 418 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 + L IT+I+P+RF L FERF+NP+R+S PD DID C R+ VI Y ++G VAQ Sbjct: 419 MLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKNNVAQ 478 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505 IITFG+++AK A++DVGR L + S+V+ + K IP A +A+ D + D Sbjct: 479 IITFGTMKAKMAVKDVGRTLDVSLSKVNLIAKHIPELNA--TLSKALETDPHLNQLYADD 536 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565 ++++++ +LEG R+ HAAG++I L+ +P+ S + TQF+MK +E Sbjct: 537 AEAAQVIDMAMQLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVES 596 Query: 566 AGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624 G++K DFLGLKTLT + ++ + G ++++ +P DD T+ LL T+GIFQ+E Sbjct: 597 VGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTMGIFQME 656 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S GM++ + ++PD E+IIA+ +LYRPGP+D I + NRK+GKE I HPLI+ +LKE Sbjct: 657 SKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEVITYDHPLIESILKE 716 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+++YQEQVMQIA L+ YSL E DVLRRAMGKK +M +++ +F A KNGI Sbjct: 717 TYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDINQMLQERTKFCERACKNGIDAD 776 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ K Sbjct: 777 LATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVGK 836 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863 +A NI ++PP +N +F D I +++ AIKG+G I+E P+ Sbjct: 837 LIHEAHSMNICVLPPDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEEREKHGPYQ 896 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 +++DF R D KK+ ++ E+L+ AG D F R L++I + +K Sbjct: 897 NIQDFLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKKEAATGV 956 Query: 924 ENIFAHEKGTFSDKITLEK---FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F+ I L + E+ +LG Y + HP+D K IL ++ + Sbjct: 957 MTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLTEHPMDAVKDILPRLSV 1016 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033 E + G IR ++ + + KG R + ++ YE +P Sbjct: 1017 VSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1070 >gi|295698553|ref|YP_003603208.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola USDA] gi|291157151|gb|ADD79596.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola USDA] Length = 1177 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 396/1060 (37%), Positives = 614/1060 (57%), Gaps = 46/1060 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + K P F+HL V S YS+ +G ++ ++D+ + P+IAITD NL ++F + + + Sbjct: 1 MNKEPKFIHLHVRSDYSMSDGLSRIDILIDRALELKMPSIAITDFVNLHGMIKFYELSRS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG + + K F T + +L+ +GYQ L++L+S Y Sbjct: 61 VGIKPIIGSDVIVQDLS--------KNGFETYYELTILIKDHKGYQNLVQLISLAYRDGN 112 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL EGLI+L+GG SG I + N+ +K L + F + Y+ Sbjct: 113 STMGPIIKKDWLILY-REGLILLSGGISGDIGKNILENNLSDLKKNLNFYGTYFHNHYYM 171 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST--VVS 241 + R + +V+QL+ ++P+VATNN F+ + D+ AH + +A+ + S Sbjct: 172 EITRTGKIEEEKYIHKVIQLSKKKKIPIVATNNVRFVFKNDFFAHKIRVAIQNGFVLSKS 231 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +KD R + YL++ EM +F D+PE+L+NTVEIA+RC+ F+ Sbjct: 232 RKDDLRYSDQQYLRSSKEMNDLFRDIPESLKNTVEIAKRCNLQFSF-----SNFLLPVFP 286 Query: 302 DIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E+ A +GLE ++ + Y QRL E+N+I +M FSGYFL Sbjct: 287 IKNVRIEDFFVFSARSGLEERLKKIYPDPSIRKRKRDKYDQRLSEEINIIHQMGFSGYFL 346 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV +F+ W+K+ NIPVGPGRGSGAGS+ AY+L IT++DP++F+L+FERFLN +R+SMPDF Sbjct: 347 IVMEFVNWSKRKNIPVGPGRGSGAGSLVAYSLKITELDPIKFNLVFERFLNKERISMPDF 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDFC ++RD VI +V KYG + V+QII FG++ A++ ++DVGRA+ PYS +R+ KL Sbjct: 407 DIDFCVEKRDLVIEHVIKKYGKDFVSQIIAFGTMTARSVVKDVGRAMCYPYSFTNRISKL 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 IP DP + A++ + + ++ + V LL+ ++KLEG+ R+ S HA GIVI + Sbjct: 467 IPFDPGMTIE-HALSSEKKLKKLYENEEEVKILLDTAKKLEGIVRNVSKHAGGIVISPKK 525 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------QR 592 + + P+Y D +T + IEK GL+KFDFLGLKTLT+++ +++ + ++ Sbjct: 526 IIKYFPLYYDSIGKNSLTHLDKDDIEKIGLVKFDFLGLKTLTIIRDTIEIINFHSSDLKK 585 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 DL+ I +D ++ LL + T+ IFQLES GM+ + +QPDC EDII+L++L+RP Sbjct: 586 ITLSDLNSISLNDPMSFDLLRSAETVAIFQLESRGMKDLIRRLQPDCFEDIISLIALFRP 645 Query: 653 GPIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + + + NRKNG EKI H L+ P+LK T G+I+YQEQVMQIAQ+L+GY Sbjct: 646 GPLKSGMISNFINRKNGLEKISYPEEECQHDLLKPILKNTYGIILYQEQVMQIAQILAGY 705 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL EAD+LRRAM KK K+EM Q++ F K GI + +A +F+L+ KF+ YGFNKSH Sbjct: 706 SLGEADILRRAMSKKNKKEMKDQRKNFERRCLKRGIDREMASRMFDLMEKFSGYGFNKSH 765 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAYA+ISYQT W+K+HYP EF+AASMT EM+N++KI + + R+ I+I+PP+VN Sbjct: 766 SAAYALISYQTLWLKSHYPSEFIAASMTSEMNNLDKIFELVNECRRLKIKILPPNVNQGM 825 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883 F+V + I Y + AIKG+G + ++ + F + DFC R++ K +NR+ LE Sbjct: 826 YFFQVNRNGEIIYGMGAIKGIGKSVIEKMISSRNKYGKFLDIFDFCRRINVKTVNRKTLE 885 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 L+ +G+ DCFG R ++L L + K +K +++ ++F + ++ Sbjct: 886 KLILSGSFDCFGQKRFEMLHILKDALKLTAQEKKVQSSGQIDMFETDIRKNRSIREIDDL 945 Query: 944 SVENSSVRFEN-EQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT--IRGNNIRLAA 999 S + E+ LGFY + HP Y+ + K + ++ + +++ + Sbjct: 946 SRKRLKRMVFYGERDTLGFYLTNHPTSFYRSEISYYTRGKNIRDILSHSFSQESSLTVVG 1005 Query: 1000 MVVS---KQQKKT---RKGSRIGWVTFSEPAKEYEANFFP 1033 + S + K + R IG T S+ + E FP Sbjct: 1006 SISSCRLVKCKTSNFFRNSKTIGICTLSDFSGNLEIVLFP 1045 >gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1] gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1] Length = 1165 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 451/1047 (43%), Positives = 633/1047 (60%), Gaps = 36/1047 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P FV L+V SSYS+LEGA+ I PAI+I D N L+ A+ F+ + Sbjct: 1 MPFAP-FVPLRVLSSYSMLEGAIDPKAIAKLAKERGFPAISICDRNGLYGAVMFANACKS 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+QPIIG L + + + + LL GY L LVS+ +L Sbjct: 60 EGVQPIIGTLLGVAREGSEGKLVDY---------LPLLAQDEAGYDNLCHLVSKAHLDRP 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + + L E T+GLI LTG G + R A + KLF +RLY+ Sbjct: 111 LELEPHVVMDDL-EGHTDGLIALTGAGEGALTRLLAEGQVDTATTFVERLDKLFVNRLYI 169 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L RH E ++++AY LPLVATN + F ++AHD ++ +A+ST + + Sbjct: 170 ELARHGDPVCERAEDALIEMAYNRALPLVATNPANFAEPHMHKAHDAMLCIANSTYIENE 229 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 DRPR ++K+ + M +F+DLPEA NT+ IA+RC++ I Sbjct: 230 DRPRTNHAAFVKSSNMMEELFADLPEATANTLVIAQRCAYAPP-----YRDPILPSLAGD 284 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + E L ++ AGLE RL+ + Y RLD+E+++I M F GYFLIVADF Sbjct: 285 LEGEAKMLAEQSKAGLEERLSSYEDLSEEDRKVYFDRLDYEIDIIVGMGFPGYFLIVADF 344 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK IPVGPGRGSGAGS+ A+ALTITD+DP++ LLFERFLNP+R+SMPDFDIDFC Sbjct: 345 IQWAKDQGIPVGPGRGSGAGSIVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFC 404 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RR EVIRYVQ KYGH+ VAQIITFG ++A+A LRD GR LQM Y QVDRLCK++PN P Sbjct: 405 ETRRGEVIRYVQKKYGHDHVAQIITFGKMKARAVLRDCGRILQMSYGQVDRLCKMVPNHP 464 Query: 484 AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + +A+ + F++ D V RL++++ +LEGL R++STHAAG+VIGDRPL+QL Sbjct: 465 TDPWTLPRALNGAADFKKEYDNDNEVKRLVDLALQLEGLPRNSSTHAAGVVIGDRPLAQL 524 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602 VP+YRD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K++D LA RG+++DL +P Sbjct: 525 VPLYRDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLRKAVDLLAMRGIEIDLGALP 584 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD Y L+ T+G+FQLES GMR+ L+ ++P DIIALVSLYRPGP+DNI ++ Sbjct: 585 LDDTAVYDLMQMGNTVGVFQLESEGMRRTLKAVKPSNFGDIIALVSLYRPGPMDNIPLFG 644 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK G+ I HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++ Sbjct: 645 QRKAGEVAIEYPHPKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQ 704 Query: 723 EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 EMD Q+ RF+ G +GI A +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK Sbjct: 705 AEMDIQRGRFVEGCKDVSGIEAKQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKA 764 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQF--------NIQIMPPSVNTPCVDFKVG-- 831 HYP EF AASM ++ EK+ F DAR++ ++++PP VN F V Sbjct: 765 HYPEEFYAASMCFDLHQSEKLNIFVDDARRYPAERANGSGVEVLPPDVNHSEARFTVEQT 824 Query: 832 --DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + Y+LA I+ VG I+ E + PF+SL+D R+ +NRR LE L+ A Sbjct: 825 DDGYAVRYALAGIRNVGEKAMEAIVAERRSKGPFESLKDLFERMPHGAMNRRQLEGLICA 884 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GALD +R +L + D + A + R++ +F + D + L+ + Sbjct: 885 GALDGLYPNRGELFANADLLLATADAAARERSSGQGGLFGGDNAPQED-LRLQPAESWSR 943 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG-NNIRLAAMVVSKQ 1005 + E+ GFYFS HP+ Y+ + G + Y+ + G +AAMV S Sbjct: 944 PDQMAKERENFGFYFSAHPVQQYREVASAQGARTYQSLMDGGAPAGRQTAVIAAMVESAG 1003 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +T++G+ FS+ + ++ A F Sbjct: 1004 KGRTKRGAEFVRGQFSDSSGQFSAACF 1030 >gi|294786036|ref|ZP_06751323.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27] gi|294486373|gb|EFG33736.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27] Length = 1133 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 381/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L I +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS K + + ++F + Sbjct: 108 -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKISKIIDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA H L LVATNN ++ + YE D+++ + V Sbjct: 166 YLEIQANELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+ENT IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNVEISFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ I++ P++N+P F+V + I Sbjct: 754 AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNEGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T D+ L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKSSKTDEIQQMNLFGEAAKT-IDRFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK IL IK E ++ + + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDRYKDILITFSIKKLSEI-DLEEKQVVKTFGTITNLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 + FP Sbjct: 992 AMFNLICYDRT--ISCIAFP 1009 >gi|228993333|ref|ZP_04153249.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442] gi|228766401|gb|EEM15044.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442] Length = 1096 Score = 668 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 357/1015 (35%), Positives = 574/1015 (56%), Gaps = 46/1015 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + ++AITD N ++ + F + G++PIIG + ++ Sbjct: 1 MLKSACKIDELVSRAKELGFSSLAITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +VLL GYQ L+++ S + + I WL Sbjct: 61 E-----------EQSYPLVLLAENEIGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR T +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F + + LR GL Sbjct: 224 MEALFSHAEEALQNTVRIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 G +R+RL+ EL VI+RM FS YFLIV DF+++ ++ I GPGRG Sbjct: 280 NK-------RYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++KYG Sbjct: 333 SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + + R Sbjct: 393 QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E + +R+ EI++++EGL RH S HAAG+++ PL+ V + + +D+ VTQ+ Sbjct: 452 EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 + +E+ GL+K DFLGL+ LTLL+ L + + G ++D+ +P D +T+ LL T Sbjct: 511 AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H + Sbjct: 571 GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKRQIHYLHSDL 630 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G + Sbjct: 631 KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + N Sbjct: 691 NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 751 EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 811 RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ K + + + NE+ LGFY S +P Y +++++ Sbjct: 865 ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I +++ R R V + +T+K ++ +VTF + E EA FP Sbjct: 919 EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|296327603|ref|ZP_06870148.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155277|gb|EFG96049.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1133 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 381/1040 (36%), Positives = 591/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L I +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS K + + ++F + Sbjct: 108 -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA H+L LVATNN ++ + YE HD+++ + V Sbjct: 166 YLEIQANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELHDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+EN IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A NG ++ + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAVHNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V ++ I Sbjct: 754 AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHEVRVYSPNINSPSAYFEVKNDGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK IL IK E I+ +++ ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDKYKDILTTFSIKKLSEF-DLEGNQVIKTFGTIINLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 S + FP Sbjct: 992 AMFNLSCYDRT--LSCIAFP 1009 >gi|294782977|ref|ZP_06748303.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA] gi|294481618|gb|EFG29393.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA] Length = 1133 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 374/1038 (36%), Positives = 594/1038 (57%), Gaps = 38/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSLLEG S+++ L + ++A+TD N+F A+EF +KA Sbjct: 1 MENN--FVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + ++ + ++ LL EGY+ L++L S +Y + Sbjct: 59 MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182 + +RI L+E ++GLI L+ G I +A N S+ +K + + ++F + Sbjct: 107 DNRELRISKEILKE-HSKGLIALSSSMKGEIGKAILMNFPSEKLDKIVDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + ++A + LVATNN ++ + YE D+++ + + Sbjct: 166 YLEIQANELLETKVINDKFYEIAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225 Query: 242 QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 K+R R S+ +A+ENT IA C+ ++ P + Sbjct: 226 DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIKFGNLQFPYYEVPN 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L++ ++ + +D +RL++EL+VI +M +SGYF++ Sbjct: 286 QYSGM---DEYLKSICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++DRL KL+ Sbjct: 397 IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + + ++ + D + +++++S ++E RH STHAAGI+I L Sbjct: 457 SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + + ++L Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K +YP + AA MT E+ I + DA++ I+I PP+VNTP F++ ++ I Sbjct: 754 AYLKAYYPAFYFAAIMTSEISETGDIAYYFNDAKEHKIRIYPPNVNTPSAYFEIKNDGIS 813 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK +G A+ I+E + + L++F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNLGLNLAKKIVEDYEKNGVYSKLDEFLIRNKKNGINKRALEALILSGALDELE 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y K + N+F T + K TL N + E Sbjct: 874 GNRKEKFLSIDKVLDYVSKASKTDEIQQMNLFGEASKTIN-KFTLTSCEDFNLDEKLTKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK I+ I E ++ + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDKYKDIITTFSINKLSEI-DAEESKVLKTFGTITGLKKIITKKEEQM 991 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + + FP Sbjct: 992 ALFSILCYDRAISCIAFP 1009 >gi|93006042|ref|YP_580479.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5] gi|92393720|gb|ABE74995.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5] Length = 1247 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 385/1066 (36%), Positives = 597/1066 (56%), Gaps = 72/1066 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS YS+ + + + ++ AAD Q A+A+TD +NL++ ++F + AGI+P Sbjct: 2 AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQSALALTDLSNLYATVKFYRACLGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125 IIG ++ ++ +D + LL EGYQ + +VS + + Sbjct: 62 IIGSEVIMENED---------------TRLTLLAMNNEGYQNITRIVSLGFTEGRADPVN 106 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + I S + G+I+L + +A + + A++ L ++ F DRLY Sbjct: 107 HGTPVIKRSHILA-HAAGVIVLF-TEKSDVGQALIGSMPEKADELLTEWQAQFADRLYFA 164 Query: 186 LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++R +R + + H +P++A N+ FL ++D++AH+ + +A S V++ ++ Sbjct: 165 IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP+ + YLK +++M +F+D+P+ ++NT+ +A RC+ L + +LP F E + Sbjct: 225 RPQTYSDAQYLKTQAQMEQLFADIPQVIDNTLRLATRCNVSLTLGINVLPEFPVPEGE-- 282 Query: 304 QKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ R ++ GL+ RL + Q Y RL++EL VI M F GYF Sbjct: 283 --TTESFFRLESQRGLDNRLDKLFPVDARSDNWSDIRQRYDDRLEYELKVILSMGFPGYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD Sbjct: 341 LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC + RD VI YV YG E V+QIITFG++ AKA +RDV RA Y ++ K Sbjct: 401 FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532 LIP P +S QA+ + + ++ ++D + E++ KLEG+ R+ HA G+ Sbjct: 461 LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ ++ + R Sbjct: 520 LIAPHRITDFSAIYCDD-EGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVIDAAVRNINLR 578 Query: 593 GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 K L +P DD + Y LL T +FQLES GM++ L +QP IED+IA+ Sbjct: 579 RAKEGKDALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +LYRPGP+D +V Y +RK+G+E+++ HP ++P+L+ T GVI+YQEQVMQI+Q+++GY Sbjct: 639 ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQ++ F++GA+ GI + + +F+L+ KFA YGFN+SH Sbjct: 699 SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824 +AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ ++ ++ PSVN Sbjct: 759 SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLTVVNPSVNRS 818 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882 F I Y L AIKGVG I+ + PF L DFC RVD KK+N+R L Sbjct: 819 EWHFVADTPTNIIYGLGAIKGVGEGAVESIVDARRREGPFKDLYDFCRRVDIKKVNKRTL 878 Query: 883 ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 E+LV AG D F + R L+ L + + A+ +NR ++F Sbjct: 879 EALVSAGCFDDFAATLRPDLPADEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938 Query: 930 EKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEES 986 G + L R + E+ LG Y +GHP+D Y+ L++ ++ Sbjct: 939 MDGVVA-APPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKL 997 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 T + A +++ TR +T + E + + Sbjct: 998 TDTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038 >gi|237745381|ref|ZP_04575862.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229432610|gb|EEO42822.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1133 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 378/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S++N L + ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L I +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPIFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS + + ++F + Sbjct: 108 -NRELKLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA + L LVATNN ++ + YE DV++ + V Sbjct: 166 YLEIQANELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+EN IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKENL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ I++ P++N+P F+V ++ I Sbjct: 754 AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNDGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK I+ I E +++ + + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDRYKDIILAFRINKLSEI-DLEGNQSVKTFGTITNLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 S + FP Sbjct: 992 AMFNLSCYDRT--ISCIAFP 1009 >gi|330950665|gb|EGH50925.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7] Length = 939 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 389/957 (40%), Positives = 554/957 (57%), Gaps = 53/957 (5%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SFVHL++H+ YSL++G + + ++ + PA+A+TD NN+ S ++F + A Sbjct: 1 MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +GI+PI G L + G+ + I LL A+GY+ L EL+SR ++ Q Sbjct: 59 SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + I W+ + +EG+I L+ G I A + A++ L + ++F DR Y+ Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QR +R D V LA H PLVATN+ F+ + D+EAH+ + + + Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + YLK+ EM +FSDLPEALENTVEIA+RC+ +++ LP F + Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287 Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 I + R + GLE R Q Y RL+FEL++I +M F GYF Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYF 343 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV R Y DRL K Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 +IP + + +A + R+ D + E++ KLEG+ R+ HA G+VI Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592 L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT++ +L + + Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D++ IP DD TY LL T +FQLES GM++ ++ ++PDC+ED+IALV+L+RP Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642 Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GP+ + +V + + + + P+L T G+I+YQEQVMQIAQ+++GY Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 +L AD+LRRAMGKK EEM KQ+ FI G N I +A NIF+L+ KFA YGFNKSH Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 +AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ R +++ P VNT Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822 Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 F V D RI Y L AIKGVG I +A + PF L DFC+RVD K++N+R L+ Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882 Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 L+ +GALD G +R LL +L+ + A+ ++R + H ++ Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDL 939 >gi|237740911|ref|ZP_04571392.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229431208|gb|EEO41420.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1132 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 379/1034 (36%), Positives = 585/1034 (56%), Gaps = 40/1034 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA GI+PI Sbjct: 4 FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L I +D + S+ LL GY+ L++L S +Y ++ + ++ Sbjct: 64 IGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188 I L++ ++ LI+L+ +G I +A NSS K + + ++F + Y+ +Q Sbjct: 112 INKEVLKKY-SQDLIVLSSSINGEIGKAILTNSSDEKISKIIDEYIEIFSKENFYLEIQA 170 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + + LA H L LVATNN ++ + YE D+++ + V +K+R R Sbjct: 171 NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKR 230 Query: 248 VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + F +A+ENT IA C+ + P + Sbjct: 231 AISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNIEISFGNLQFPYYEVPSEYSGM- 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L+ ++ + +D +RL++EL+VI +M +SGYF++V DFI Sbjct: 290 --DEYLKTICHTNIKKLYKEDL------TKDILERLEYELSVIIKMGYSGYFIVVWDFIS 341 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++ Sbjct: 342 YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 402 RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPF--- 458 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + ++ + D + ++++++ ++E RH STHAAGI+I L + VP+ Sbjct: 459 QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL IP D Sbjct: 519 YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + + + Sbjct: 579 DKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRAMGKK Sbjct: 639 NRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K H Sbjct: 699 AIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKVH 758 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP + AA MT E+ I + DA++ I++ P++N+P F+V + I YSLAAI Sbjct: 759 YPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAAI 818 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD +R + Sbjct: 819 KNFGLTMAKKIIEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 S+D + Y+ K + N+F T DK L + E+ LGF Sbjct: 879 FLSIDKVLDYSSKASKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKEKEFLGF 937 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HPLD YK I+ I E ++ + + ++ T+K ++ Sbjct: 938 YLSSHPLDRYKDIILAFRINKLSEI-DLEGSQIVKTFGTITNLKKIITKKEEQMAMFNLI 996 Query: 1022 --EPAKEYEANFFP 1033 + FP Sbjct: 997 CYDRT--ISCIAFP 1008 >gi|256028238|ref|ZP_05442072.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766170|ref|ZP_06525548.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289717725|gb|EFD81737.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1133 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 376/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI + +G I +A NSS + + + ++F + Sbjct: 108 -NRELKLNKEILKEY-SQDLIAFSSSMNGEIGKAILTNSSDEKIDSIINEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA + L LVATNN ++ + YE D+++ + V Sbjct: 166 YLEIQANELLETKIINDKFYDLAKFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+EN IA C+ + P + Sbjct: 226 EKNRKRTISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNIEITFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V + I Sbjct: 754 AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNEGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK +L IK E +++ + + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDRYKDVLTTFSIKKLSEF-DLEGNQSVKTFGTITNLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 S + FP Sbjct: 992 AMFNLSCYDRT--ISCIAFP 1009 >gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996] gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996] Length = 1124 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 388/1017 (38%), Positives = 569/1017 (55%), Gaps = 34/1017 (3%) Query: 26 ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85 + + ++ K PA+ I+D N F ++F + +AGI+P+ + I Sbjct: 1 MVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWI-------- 52 Query: 86 TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGL 144 +L++ GY RL EL++ Y+ D+ + WL+ GL Sbjct: 53 --GNPNAPDKPFRAMLVIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLENGDNSGL 110 Query: 145 IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQ 202 I L+G G + + A L + F D Y+ LQR R S V+ Sbjct: 111 ICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVK 170 Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMV 261 LA LP+VAT+ + F+S +D+ AH+ + +A V++ K RPR TP + M+ Sbjct: 171 LAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETML 230 Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321 F+DLPEALENTVEIA+RC+ + + LP F + ++ L + GL+ Sbjct: 231 ERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG----LSLDDYLVKLSNEGLQE 286 Query: 322 RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 R+ Q + A+ +Y++RLDFELN+I +MKF GYFLIV DFI WAK + PVGPGR Sbjct: 287 RMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGR 346 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFCQ R VI YV+ KY Sbjct: 347 GSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKY 406 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSR 497 G E V+QI+TFG++ +KA +RDVGR L++P++ D+L KLIP + P+ A+ + + Sbjct: 407 GAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQ 466 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 +E A D L+ +++KLE L R HA G++I +S P+Y+ S PV+ Sbjct: 467 IQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSM 525 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616 ++ +E GL+KFDFLGL+ LT+++ + + + VD+ IP DD Y + Sbjct: 526 YDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVGTIPLDDQLAYKIFRDAN 585 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676 T +FQ ES+GM++ L+ E++IA VSLYRPGP+DNI + R G+ + IHP Sbjct: 586 TTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQ-EFQYIHP 644 Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736 L++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRRAMGKK EEM K +E F GA Sbjct: 645 LLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGA 704 Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796 +K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+ Sbjct: 705 AKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSEL 764 Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME 855 DN +++K F D R I+ +PP +N F N +I Y+L AIKG G I+ Sbjct: 765 DNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIA 824 Query: 856 ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 A F L DFC RV + +NRR LE+L+ GA D +R LL ++D A Sbjct: 825 ARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD- 883 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 +K +F + + L + + S + E+ V+GFY SGHP Y Sbjct: 884 -QKAANANQGGLFDMMEDAIEP-VQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQE 941 Query: 975 LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +R++ +++RLA V + + ++G I +V+ + + + E Sbjct: 942 VRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQIEIMV 994 >gi|205374532|ref|ZP_03227328.1| DNA polymerase III DnaE [Bacillus coahuilensis m4-4] Length = 1115 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 385/1029 (37%), Positives = 603/1029 (58%), Gaps = 45/1029 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLLE +S+ ++ K +D +A+TD N ++ + F Q+ AGIQP Sbjct: 2 SFVHLQVWSAYSLLESTISIEKLVQKAKSDGYTHLALTDKNVMYGVIPFYQECRKAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG DI D T+ +VLL T GY+ L+++ S + +G Sbjct: 62 IIGVTADILHDD------------DTIHPLVLLAETERGYRNLMKISSVIQTKPEG---- 105 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I WL+ EGLI +T G G I+ + + A+K + ++ +F Y+++Q Sbjct: 106 AIPFKWLKGY-KEGLIAITPGEDGKIEDELTNGAVEAAKKTIYSYLSIFSSHNFYLSIQW 164 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247 + +S++ QL P++ ++ +L++E+ A + L+A+ +S+ DR Sbjct: 165 QT---THIQSELKQLGKETSTPILCSHPVRYLTKEEAFAQECLLAIRDGKKLSEDDRTIL 221 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + ++ K+ SEMV +FS L+NTV +A+RC + + +LP++ KE Sbjct: 222 PSNEYDFKSPSEMVELFSTEWGCLQNTVSVAKRCHIEIPLQQSLLPKYPLKEG----TSP 277 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L + GL+ R+ YH Y +RL +EL++I M+F YFLIV DF+++A Sbjct: 278 IDALSSLCKKGLKERVP-------YHHHTYVERLQYELSIIENMQFEDYFLIVWDFMKYA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I GPGRGS AGS+ AY L ITD+DP+ LLFERFLNP+R+SMPD DIDF RR Sbjct: 331 REHDIVTGPGRGSAAGSLVAYVLHITDVDPIEHHLLFERFLNPERVSMPDIDIDFPDHRR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEVI+YV++KYG VAQI+TFG+ KAALRDV R+ +++RL +++P P + Sbjct: 391 DEVIQYVKDKYGELHVAQIVTFGTYGVKAALRDVARSFGFNTKEMERLSRMVPTTPGTTL 450 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 ++A + + +E +L + + LEGL RH STHAAG+VI +RPL +VP+ Sbjct: 451 -VKAYRESKQLQEFIKESDLHQKLYKTAVLLEGLPRHTSTHAAGVVISERPLVDIVPIQT 509 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 + + +TQ++M +E+ GL+K DFLGL+ LT+L++ + + + + L I +D Sbjct: 510 GS-NGIYLTQYSMTVLEEIGLLKMDFLGLRNLTILEQLVKTINRYSKEEFKLDQIDQNDS 568 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T+ LL+ T GIFQLES GMR+ L ++P EDI+A+ +LYRPGP++NI Y RK+ Sbjct: 569 KTFELLSKGDTSGIFQLESEGMRKVLLSLKPSGFEDIVAVNALYRPGPMENIPDYVERKH 628 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G++ I SIHP ID +L T+GVI+YQEQ+MQIA +++G+SL EAD+LRRA+ KK + + Sbjct: 629 GRKPIPSIHPDIDSILNVTKGVIVYQEQIMQIASVMAGFSLGEADLLRRAVSKKKADVLQ 688 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K++E F+ GA+ G +A +++L+ KFA+YGFN+SHA AY++ISYQ A++K H+P Sbjct: 689 KEREHFVQGATAKGYPVKLANEVYDLIVKFANYGFNRSHAVAYSMISYQLAYIKAHFPSY 748 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 FLAA +T + N +K+ + +AR+ NI + PS+N F N I YSL AI+GVG Sbjct: 749 FLAALLTSVIGNEDKVAAYIHEARKKNIDLFSPSINRSYYSFFATKNGITYSLGAIRGVG 808 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I+ A +KPF+ L DFC RVDSK +NR+ +ESL++AGALD F R LL SLD Sbjct: 809 VKAYQEILRARNEKPFEDLMDFCLRVDSKVVNRKTIESLIYAGALDEFKKDRAVLLASLD 868 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ ++ ++ +F E + + + ++ + E+ VLG Y S H Sbjct: 869 AALDHSDLLKPKGSD--FALFDEEDMLLL-RPKYVEIEPMPTDIKLQYEREVLGIYLSDH 925 Query: 967 PLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PL ++ + R++G + + + + + +T+KG + +V ++ Sbjct: 926 PLRQFEGLQRRIGALPLSDTPIGKKEHDHIV----YLSEVKPIRTKKGDVMAFVKLTDQT 981 Query: 1025 KEYEANFFP 1033 E + FP Sbjct: 982 GEVDGVVFP 990 >gi|256846853|ref|ZP_05552308.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_36A2] gi|256717819|gb|EEU31377.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_36A2] Length = 1132 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 373/1034 (36%), Positives = 583/1034 (56%), Gaps = 40/1034 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+PI Sbjct: 4 FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L I +D + ++ LL GY+ L++L S +Y ++ + ++ Sbjct: 64 IGLELPISNRDE-----------QNIFTLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188 I L++ ++ LI+L+ +G I +A +SS K + + ++F + Y+ +Q Sbjct: 112 INKEVLKKY-SQDLIVLSSSINGEIGKAILTDSSDEKINKIIDEYIEMFSKENFYLEIQA 170 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + + LA + L LVATNN ++ ++ YE D+++ + V +++R + Sbjct: 171 NELPETKIINDKFYNLAKLNGLELVATNNVYYVDKDGYELQDIIICIQSGLKVKERNRKK 230 Query: 248 VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +A+EN IA C+ + P + Sbjct: 231 AISKELYLKSKEEMQRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYYEVPSEYSGM- 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L+ ++ + +D RL++EL+VI +M +SGYF++V DFI Sbjct: 290 --DEYLKTICHTNIKKLYKENL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFIS 341 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++ Sbjct: 342 YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI A Sbjct: 402 RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQAL 461 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + ++ + D + ++++++ ++E RH STHAAGI+I L + VP+ Sbjct: 462 ERT---LKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL IP D Sbjct: 519 YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D + +H+L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + + + Sbjct: 579 DKKVFHMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRAMGKK Sbjct: 639 NRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M + +E+FI A NG ++ + IFEL+ KFA YGFNKSH+ AYA+ISY T + K H Sbjct: 699 AIMRENREKFIERAINNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTGYFKVH 758 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP + AA MT E+ I + D ++ I++ P+VN+P F+V + I YSLAAI Sbjct: 759 YPAYYYAAVMTSEISETGDIAYYFNDTKEHGIRVYSPNVNSPSAYFEVKNEGITYSLAAI 818 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD +R + Sbjct: 819 KNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 S+D + Y+ K + N+F T DK L + E+ LGF Sbjct: 879 FLSIDKVLDYSSKASKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKEKEFLGF 937 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HPLD YK IL IK E ++ + + ++ T+K ++ Sbjct: 938 YLSSHPLDRYKDILITFSIKKLSEI-DLEEKQVVKTFGTITNLKKIITKKEEQMAMFNLI 996 Query: 1022 --EPAKEYEANFFP 1033 + FP Sbjct: 997 CYDRT--ISCIAFP 1008 >gi|254442121|ref|ZP_05055597.1| DNA polymerase III, alpha subunit subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198256429|gb|EDY80737.1| DNA polymerase III, alpha subunit subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 1259 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 357/1109 (32%), Positives = 567/1109 (51%), Gaps = 98/1109 (8%) Query: 5 LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 + FVHL H+ YSLL+G + PA+A+TD NLF A++F + Sbjct: 1 MSNPAEGPFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSC 60 Query: 63 CAAGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIV-------------------LL 102 GI+P+IGC+L ++ + + + + I ++ Sbjct: 61 KKVGIKPLIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVI 120 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 EGYQ L +LVS ++ + R + L + ++GLI L+G +G + + Sbjct: 121 AKNFEGYQNLCKLVSDAHI-NGVYYKPRADIETLAKY-SKGLIGLSGCINGVAAQYLIYG 178 Query: 163 SSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFL 220 + A K TF +FG + ++ +Q H R +++LA +L ++ N+S ++ Sbjct: 179 DEENARKATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYV 238 Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279 +ED HD L+ + ++ ++R + + + YLK+R EM IF ++PE+L+NTV +A Sbjct: 239 YKEDANPHDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAE 298 Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENE----------------------------- 310 + P F + +++ Sbjct: 299 MVDLEIPFDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAE 358 Query: 311 -----------LRNKAVAGLEVRLAQGAI----------AKGYHAQDYRQRLDFELNVIA 349 L + GL+ R + A+ ++DF+L +I Sbjct: 359 ERANHKKNGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIIT 418 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 F YFLIV DFI +A+ IPVGPGRGSGAG + AY L ITDIDPLRF LLFER LN Sbjct: 419 GTGFVDYFLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLN 478 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 +R+S PDFDIDFC RRD V+ YV+ KYGH+ VA IITFG+ AK +RD+ R + + Sbjct: 479 LERVSPPDFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQF 538 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 ++ D++ K+IP++ + ++ S R +P +++E + +EG+ R+ HA Sbjct: 539 AEADKIAKMIPDELNISLD-DSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHA 597 Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589 GI+IGD+P+ LVP+ + TQ+ E GL+K DFLGLKTLT++ + D + Sbjct: 598 CGIIIGDQPIHNLVPVTL--QEGDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNI 655 Query: 590 A--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + D+ + +D +TY LL T+G+FQLES GM+ + + E+IIAL+ Sbjct: 656 QATRNLPDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIALI 715 Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 +LYRPGP+ I + K +KI HPL++ ++ ET GV++YQEQVM+ A++++GY+L Sbjct: 716 ALYRPGPMQFIPQFIEGKRDPKKIQIPHPLLEELVSETYGVLVYQEQVMESARIIAGYTL 775 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHA 766 AD+LRRAMGKKI M+ QK+ F+ GA +GI + A+NIF +L KFA YGFNKSH+ Sbjct: 776 GGADMLRRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQYGFNKSHS 835 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 AAYA++SY+TA++K +YPVEF+AA ++ E+ N +K+ F +A I+++ P +N Sbjct: 836 AAYAMLSYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLSPDINKSKE 895 Query: 827 DFK--------VGDNR---IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 F + D + I + + A+KGVG + A+ I+ A+ P++ +++ RVD+ Sbjct: 896 MFTPVIDSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMDELLERVDT 955 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932 K +N+RVLE+L+ GA D G R L L+ A ++++ E+ F E+ Sbjct: 956 KSVNKRVLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESFFDMIVEEP 1015 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 D + + E+ +LGFY SGHPLD YK I + + Sbjct: 1016 KEKDAPQWDLSKQFTKTEMLRYEKELLGFYVSGHPLDEYKGIAEALTNFDLSKVDQLGDK 1075 Query: 993 NNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020 + + +K +RK + + Sbjct: 1076 VEFQACGVAGGVVKKLSRKDNRPWAFFSL 1104 >gi|269836260|ref|YP_003318488.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] gi|269785523|gb|ACZ37666.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM 20745] Length = 1095 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 304/1055 (28%), Positives = 484/1055 (45%), Gaps = 64/1055 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +V L +H++YS L+GA I+ + + A+AITD + L A+EF+Q A A Sbjct: 1 MGREHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 A IQPI G +L + + LL + GY L L++ + Sbjct: 61 ADIQPITGAELTLADGS----------------HLTLLAESVTGYGNLCRLITAAH-HAG 103 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 + R+ L EGLI+LTG G + R AE L + + FG + + Sbjct: 104 EDRVPRLDPDLLPR-HAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVV 162 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V LQ++ Y D R +V+LA L AT N + E + DVL+A+ T + Sbjct: 163 VELQQNLVYGDTRRVRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDG 222 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R + +E V++ D A + + R Sbjct: 223 AHRARRANAEFYLRAAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYR-FPDYPTA 281 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + ++ L L R + A RL EL +IAR + +G+FL+ D Sbjct: 282 PGETPDDLLARICREALAERYPEPERRAAAEA-----RLAEELRLIARHRLAGFFLLYRD 336 Query: 363 FIQWAKKN--------------NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408 + A++ N+P G GRGS S+ Y + ++ +DPL L RFL Sbjct: 337 LLLLAQEVAAEVRGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLGRFL 396 Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468 N D S+PD D+DF +D R+ +I V YG E A + F + + ++A+RD+G+AL +P Sbjct: 397 NEDLRSVPDIDLDFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKALGLP 456 Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 +D++ KL A + + +A F R A P + L+E++++L G RH + H Sbjct: 457 QPDIDKIAKLSEARSAKDL-GEELARIPEFAARRDA-PPLRYLVELAEELAGFPRHVTQH 514 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 G+++ PL +LVP+ + Q++ + A IK DFL L L+L+++ L+ Sbjct: 515 VGGMIVSSSPLVELVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEECLEL 574 Query: 589 LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + VDLS I F D Y ++ T+G+FQ+ES Q L QP +ED+I V Sbjct: 575 IVRSGKPPVDLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLIVQV 634 Query: 648 SLYRPGPI-------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700 ++ RPGPI +N + I HP ++P+L+ET GVI+YQEQV+++A Sbjct: 635 AIVRPGPIVGKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLEVAM 694 Query: 701 LLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 +L+G++ +A+ LRRAM K+ +E M +F GA G+ +A +F L FA+Y Sbjct: 695 VLAGFTAGQAEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGFAEY 754 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GF KSH+AA+AV++YQ+AW++ +YP EF A + DA++ ++I+PP Sbjct: 755 GFPKSHSAAFAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRILPP 814 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 VN V N + ++G+G A I A+ P+ SL DF RV L Sbjct: 815 DVNQSGARCTVEGNAVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRVP---LA 871 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 R +E+L+ GA D FG R + L L + + K + D + Sbjct: 872 REAVENLIVVGAFDGFGLGRREALWQLGLFIPARGFGKNGAAGKQLPL---ALPVEQDMV 928 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 L S + + LG HPL + +P L + I + G +R+A Sbjct: 929 ELRPMSAW---EQMAADYDTLGLSPRYHPLGLLRPHLPE-AIVSTVDLAEIPDGTEVRVA 984 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +VV +Q+ T KG I ++ + +P Sbjct: 985 GLVVCRQRPGTAKG--ITFLLLEDERGLVNVIIYP 1017 >gi|19704718|ref|NP_604280.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715034|gb|AAL95579.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1133 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 381/1040 (36%), Positives = 591/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L I +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS K + + ++F + Sbjct: 108 -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA H+L LVATNN ++ + YE D+++ + V Sbjct: 166 YLEIQANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+EN IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KL+ Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLV 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SHS---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + +DL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNVQRTIDYIKKYKNIDIDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ I+I P++N+P F+V ++ I Sbjct: 754 AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGIRIYSPNINSPSAYFEVKNDGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK IL IK E I+ +++ ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDKYKDILTTFFIKKLSEF-DLEGNQVIKTFGTIINLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 S + FP Sbjct: 992 AMFNLSCYDRT--LSCIAFP 1009 >gi|260495663|ref|ZP_05815787.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_33] gi|260196846|gb|EEW94369.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_33] Length = 1133 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 376/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S++N L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + +D + S+ LL GY+ L++L S +Y ++ Sbjct: 59 MGIKPIIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS + + ++F + Sbjct: 108 -NRELKLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + ++ LA + L LVATNN ++ + YE D+++ + V Sbjct: 166 YLEIQANELTETKIINDKLYDLAEFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+ENT IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIASLCNVEITFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KLI Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K HYP + AA MT E+ I + DA++ +++ P++N+P F+V ++ I Sbjct: 754 AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNDGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD YK I+ I E ++ + + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDRYKDIILAFKINKLSEI-DLEGNQGVKTFGTITNLKKIITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 + FP Sbjct: 992 AMFNLICYDRT--ISCIAFP 1009 >gi|229019828|ref|ZP_04176629.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273] gi|229026053|ref|ZP_04182436.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272] gi|228735269|gb|EEL85881.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272] gi|228741435|gb|EEL91634.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273] Length = 1095 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 358/1016 (35%), Positives = 573/1016 (56%), Gaps = 49/1016 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + ++AITD N ++ + F + GIQPIIG I ++ Sbjct: 1 MLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIGLTASIFSEE 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +VLL GYQ L+++ S + + I WL Sbjct: 61 E-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IPKKWLAHY-A 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200 +GLI ++ G G I++ + AE+ T++ +F Y++LQ H D ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQDELLLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 + +P+VATN+ ++++ D H+ L++V T ++ DRPR+ T +YLK+ E Sbjct: 164 PEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTDQYYLKSSDE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EA++NT++IA RC + H LP+F + + LR GL Sbjct: 224 MEALFSHAEEAIQNTIKIAERCRVEIPFHVNQLPKFPVP----SNETNDTYLRRVCEEGL 279 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 G + + QRL+ EL+VI+ M FS YFLIV DF+++A +N+I GPGRG Sbjct: 280 RK-------RYGTPKEVHIQRLNHELDVISSMGFSDYFLIVWDFMKYAHENHILTGPGRG 332 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF RRDE+IRYV++KYG Sbjct: 333 SAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + + R Sbjct: 393 QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA-YEESQSLR 451 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E + +R+ EI++++EGL RH S HAAG+++ PL+ V + + +D+ VTQ+ Sbjct: 452 EFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 +E+ GL+K DFLGL+ LTLL+ + + + G +D+ +P D +T+ LL T Sbjct: 511 ADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKHIDIRNLPLQDEKTFQLLGRGDTT 570 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQLES GMR L G++P+ EDI+A+ SLYRPGP++ I + K+GK +I +HP + Sbjct: 571 GVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRRIEYLHPDL 630 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+L+ T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK ++ +D++++ F+ G K Sbjct: 631 KPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQGCLK 690 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG +T + I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A ++ + N Sbjct: 691 NGYDETASEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGN 750 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +KI ++ ++ ++ ++PPS+ +F++ N I YSL +I+ +G T ++E Sbjct: 751 EDKIVQYIRETKRKGFHVLPPSLQRSGYNFQMEGNAIRYSLLSIRNIGMATVTALLEERE 810 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 K F+ L +FC R+ SK + R LE+ V++G D FG SR L +SL +YA Sbjct: 811 GKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYANLAR-- 868 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 + G K + + E+ LGFY S +P Y + +++ Sbjct: 869 -----------DLGDAVPKSKYVQGEELPFIEQLNKEKEALGFYLSSYPTAQYAKLGKEL 917 Query: 979 GIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I + A + R + S + +T+K ++ ++TF + E EA FP Sbjct: 918 EIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEMEAVVFP 971 >gi|319760423|ref|YP_004124361.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str. BVAF] gi|318039137|gb|ADV33687.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str. BVAF] Length = 1169 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 398/1050 (37%), Positives = 606/1050 (57%), Gaps = 42/1050 (4%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P+F+HL S YS+++ +N +L+K PA+A+TD NLF ++F + GI+ Sbjct: 4 PNFIHLHTRSDYSMIDSIAKVNELLEKAKLFNMPALALTDFTNLFGLIKFHNYSYELGIK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G I + I LV ++GYQ LI+L+S+ Y Sbjct: 64 PITGSDFCIQDSS---------SDNIDFHEITCLVINSQGYQNLIQLISKAYKYKSNTSF 114 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I +SWLQE +GLI+L+GG +G I + + ++RL + F +R Y+ L R Sbjct: 115 PVIKMSWLQEY-NKGLILLSGGRNGDIGQYLLKDKKNKIDERLSFYNNYFPNRYYIELIR 173 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246 Y+ ++L+ LP+VATN+ F++E+D+ AH++ +A+ V + Sbjct: 174 TGREYEELYLQLAIELSKIKGLPVVATNDIRFINEKDFLAHEIRVAIHDGVVVDKIQQLN 233 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + ++KN +M +F D+PE+L NTVEIA+RC+ I+ + + Sbjct: 234 KYSKQQFMKNAQDMCLLFKDVPESLTNTVEIAQRCNCIINL-----NGSFLPKFPTGSIS 288 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363 EN L A GLE RL + Y +RL EL+VI +M F GYFLIV +F Sbjct: 289 IENFLIKFAQKGLEKRLLHLFPDDKKRYINRKPYDERLSHELHVIIQMGFPGYFLIVMEF 348 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 IQWAK N IPVGPGRGSGA S+ AY LTIT++DP++F LLFERFLNP+R+SMPD DIDFC Sbjct: 349 IQWAKNNKIPVGPGRGSGASSLVAYVLTITELDPIKFDLLFERFLNPERISMPDLDIDFC 408 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 + RD VI +V YG VAQIITFG++ AKA +RDVGRAL PY+ ++ + KLIP+ Sbjct: 409 MEHRDLVIDHVVKTYGSCAVAQIITFGTMAAKAVIRDVGRALGYPYTFINSIAKLIPSKI 468 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S Q+ A DS+ + + + +L+++S +LEGL R+ S HA G+VI ++ Sbjct: 469 GITLS-QSYATDSQLKLMYDNNEEIKKLIDLSLQLEGLIRNVSKHAGGVVIAPSKITDFS 527 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----L 598 P+Y D P+TQF+ IE+ GLIKFDFLGL+TLT++ +SL + +K + Sbjct: 528 PLYYDSDHTHPMTQFDKNDIERIGLIKFDFLGLRTLTVIDRSLKMINNLRLKSCLSIIDI 587 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + I +D E++ +L T T GIFQLES G++ ++ ++PDC ED+IAL++L+RPGP+ + Sbjct: 588 NQISLNDQESFDVLQTSKTTGIFQLESRGIKALIKRLKPDCFEDLIALIALFRPGPLQSG 647 Query: 659 VV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 +V + NRK+G E I H + P+LK T G+I+YQEQVMQIAQ+L+GY+ +AD Sbjct: 648 MVDNFINRKHGYEAIYYPDSQWEHKSLRPVLKSTYGIILYQEQVMQIAQVLAGYTPGKAD 707 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRA+GKK E+M KQ+ FI GA +NGI K ++ IF+L+ KFA YGFNKSH+ AYA+ Sbjct: 708 ILRRAIGKKKPEDMAKQRSIFIDGAVRNGIDKILSKKIFDLMEKFAGYGFNKSHSVAYAL 767 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 +SYQT W+KTHYP EF+A+++ +MDN+ + + ++ ++I PP +N F V Sbjct: 768 LSYQTLWLKTHYPAEFMASTLNSDMDNLNRTINLLNECKRIGLKIHPPDINNSQYYFCVN 827 Query: 832 DNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I Y + AIKG+G T+ I+++ F L DFC R+++ K+N R++E L+F+G Sbjct: 828 KKKEIVYGIGAIKGIGKTSIDEIVKSRNCHGEFKGLFDFCVRIENLKINFRMVEKLIFSG 887 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS----- 944 A D F R +LL +L + A + +K ++F T + + S Sbjct: 888 AFDSFKTHRSKLLSTLKDTINNATQYINKKNSKQTDMFETYINTQVTEYNVLNMSCMTST 947 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVV 1002 N+ + E E+ +G Y + HP+D Y + + + I ++ + + ++ Sbjct: 948 KWNNQILLEKEKETVGLYLTNHPVDQYIDEIEQYILNINKIKDVFRKKNNEMVCIFGLLS 1007 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 S + K ++KG+ I + + + E F Sbjct: 1008 SVRIKLSKKGNYILFGILEDKDDQVEIVVF 1037 >gi|228999385|ref|ZP_04158964.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17] gi|228760330|gb|EEM09297.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17] Length = 1096 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 356/1015 (35%), Positives = 574/1015 (56%), Gaps = 46/1015 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + +++ITD N ++ + F + G++PIIG + ++ Sbjct: 1 MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +VLL GYQ L+++ S + + I WL Sbjct: 61 E-----------EQSYPLVLLAENEMGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR T +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F + + LR GL Sbjct: 224 MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 G +R+RL+ EL VI+RM FS YFLIV DF+++ ++ I GPGRG Sbjct: 280 NK-------RYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++KYG Sbjct: 333 SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + + R Sbjct: 393 QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E + +R+ EI++++EGL RH S HAAG+++ PL+ V + + +D+ VTQ+ Sbjct: 452 EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 + +E+ GL+K DFLGL+ LTLL+ L + + G ++D+ +P D +T+ LL T Sbjct: 511 AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H + Sbjct: 571 GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G + Sbjct: 631 KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + N Sbjct: 691 NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 751 EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 811 RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ K + + + NE+ LGFY S +P Y +++++ Sbjct: 865 ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I +++ R R V + +T+K ++ +VTF + E EA FP Sbjct: 919 EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|134302515|ref|YP_001122485.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134050292|gb|ABO47363.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 1159 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSMVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|118602780|ref|YP_903995.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567719|gb|ABL02524.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1144 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 386/1041 (37%), Positives = 606/1041 (58%), Gaps = 35/1041 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S +FVHL S +S+ + + +++K+ +IA+TD +NLF+A++F QKA Sbjct: 1 MTNS-NFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATI 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 A I+PI G +++I ++ S++LL +GY L EL+S Y + Sbjct: 60 ANIKPIFGARINIKDKEG------------EFYSVLLLCQDYQGYLNLSELISLSYTQGR 107 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + V + L + +GLIM+ + + N A+++ ++ + +R Y+ Sbjct: 108 SFECVSVTQQQLID-HNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYL 166 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 ++QR R +D V+LA ++ +VATN+ FL+E D++AH+ + ++ ++ Sbjct: 167 SVQRTSREFDEEHLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDV 226 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + +LK+ +M +FSDLPE LENT+EIA+RC+ ++ Sbjct: 227 RREKHFSNQQFLKSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLP---DFPVP 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E ++ GL RL + Y QRL FELNVI +M F GYFLIVAD Sbjct: 284 KDLTIERFFCEESEHGLVQRLQNLKVDTLV----YYQRLKFELNVIIQMGFPGYFLIVAD 339 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP+R LLFERFLNP+R+SMPDFDIDF Sbjct: 340 FIRWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDIDF 399 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C DRRDEVI YV KYG+++V+QIIT+G++ AK +RDVGR L PY D++ K+IPND Sbjct: 400 CTDRRDEVIDYVAKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPND 459 Query: 483 PAHPV----SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + S R ++ SV L+++S++LEGL R+ THA G+VI Sbjct: 460 LKMTLEKALSKPEEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSK 519 Query: 539 LSQLVPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594 +S P+Y+ +D V+QF+ IE GL+KFDFLGL LT++ K++ ++ + Sbjct: 520 ISDFCPVYKGYGENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSNE 579 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +DL +P DD + Y LL T GIFQLES GMR L+ +Q D EDI+A+++LYRPGP Sbjct: 580 PIDLDALPLDDKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPGP 639 Query: 655 IDNIVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +D +V + ++ HP+++ +LK T GV +YQEQVM+ AQ+++GYSL AD+L Sbjct: 640 LDAGMVDDYINVKHGAQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLL 699 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RRAMGKK EM +Q+ F+ GA++ GI + A IF+L+ KF+ YGFNKSH+ AYA +S Sbjct: 700 RRAMGKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAYVS 759 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y TAW+K+H+P F+AA ++ MDN ++I + R+ + + P+V +F + D Sbjct: 760 YHTAWLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSINDE 819 Query: 834 R-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + + Y L AIKGVG ++ E + + + SL +FCSR++ + LN+R +E+L+++GA Sbjct: 820 KTVAYGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSGAF 879 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 D G R L+++ + A+ + + + + +F++ + ++ S + R Sbjct: 880 DVLGVDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNIEQHNEYEMNYLSASSFSFKER 939 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + E+ VLG+YF+ HP D YK L+ +G + V ++R+ A++ + + T+ Sbjct: 940 LQLEKSVLGYYFNDHPTDEYKTDLKHIGAILPSKIV-FRNNKDMRILALISELRYRATKS 998 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G +I +T + AK A F Sbjct: 999 GGQIALITVEDGAKLLNAVIF 1019 >gi|224373354|ref|YP_002607726.1| DNA polymerase III subunit alpha [Nautilia profundicola AmH] gi|223588342|gb|ACM92078.1| DNA polymerase III alpha subunit [Nautilia profundicola AmH] Length = 1132 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 376/1045 (35%), Positives = 585/1045 (55%), Gaps = 50/1045 (4%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74 +HS YSLL + + ++ K A+AIT+ +N+FSA+EF + A I+PIIG Sbjct: 5 HIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPIIGSD 64 Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134 + + + ++L+ GY L+ L S YL + + Sbjct: 65 VSV-------------IRDGNIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPFE 111 Query: 135 WLQEIGTEGLIMLTGGSSGPID--------RAFFFN--SSQVAEKRLLTFKKLFGDRLYV 184 + + EGL + + A++ L +++ + +Y+ Sbjct: 112 EIVK-NKEGLCFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNLNE-VYL 169 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + R +R E +++L+ PL+A++N FL++ DY D L + ++ Sbjct: 170 EITRDSKEERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFDDLH 229 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R ++Y +++ E IF DLPEA+ENT ++A + + + P P F + + Sbjct: 230 RRPKVKENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDYAAE 289 Query: 305 KEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + K GLE RL ++YR+RLD+E+++I RMKF GY LI Sbjct: 290 EGLDIDNDVEYFEYKCKEGLEERLKHIPEN---LHEEYRKRLDYEIDIIKRMKFPGYMLI 346 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DF++ AKK IPVGPGRGS AG++ AY+L IT+IDPLR+ LLFERFLNP+R+SMPD D Sbjct: 347 VWDFVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSMPDID 406 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFCQ+RR E+I YV+ KYG VAQ+ITFGSL AK LRDV R + YS+ DR KLI Sbjct: 407 MDFCQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRFVKLI 466 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P+ + + + E DP +RL + LEGL R+ HAAG+VI D L Sbjct: 467 PDQLGITLEKAK-ELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVISDEEL 525 Query: 540 SQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597 + P+YR D D VTQ+++ ++E LIKFDFLGLKTLT++ +++ + + ++ Sbjct: 526 WKKSPLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVKFNKNEDIN 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + L+ DD + + L+ + TLG+FQ+ES GM+ + ++P EDIIA+++LYRPGP+D+ Sbjct: 586 IDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPGPMDS 645 Query: 658 IV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 + Y +RK+G++ + + P+L+ T GVI+YQEQVMQI Q + G+SL E+D Sbjct: 646 GMLDDYIDRKHGRKPVSYFFDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIGGFSLGESD 705 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 ++RRAMGKK + M K E F A + G S A ++FEL+ KFA YGFNKSH+AAYA+ Sbjct: 706 IIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSAAYAM 765 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 I+YQTA++KT+YP EFL+A +T E +N +KI K+ ++A+ I+++PP+VN +F Sbjct: 766 ITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAEFTPI 825 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 +++I + L+AIKGVG+ I+ A++P++SLEDF +VD+ K+N++VLE L+ AGA+ Sbjct: 826 EDKILFGLSAIKGVGSKAIESIV---ANRPYESLEDFILKVDTSKVNKKVLEQLIKAGAM 882 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGTFSDKITL--EKFSVEN 947 D FG SR +L ++ I ++ + V +KN N ++FA + L + Sbjct: 883 DDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNTVEFD 942 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 E E + LGFY S HPLD YK ++ + E I + + + + Sbjct: 943 IKTLLEYEYQTLGFYVSAHPLDPYKDRMKGINYNLSSEVEEIIS-QEALFVGKIDAMKVR 1001 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032 ++KG++ T + + + F Sbjct: 1002 ISKKGNKFAIATLMDFHGKIDVMIF 1026 >gi|254373926|ref|ZP_04989408.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] gi|151571646|gb|EDN37300.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548] Length = 1159 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|118497099|ref|YP_898149.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida U112] gi|194323396|ref|ZP_03057173.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida FTE] gi|208778892|ref|ZP_03246238.1| DNA polymerase III alpha subunit [Francisella novicida FTG] gi|118423005|gb|ABK89395.1| DNA polymerase III, alpha subunit [Francisella novicida U112] gi|194322251|gb|EDX19732.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida FTE] gi|208744692|gb|EDZ90990.1| DNA polymerase III alpha subunit [Francisella novicida FTG] Length = 1159 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|262066954|ref|ZP_06026566.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379302|gb|EFE86820.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1133 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 374/1038 (36%), Positives = 588/1038 (56%), Gaps = 38/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSLLEG S++N L K ++A+TD N+F A+EF +KA Sbjct: 1 MENN--FVHLNLHTEYSLLEGVNSIDNFLVKAKELGMNSLAVTDYANMFCAIEFYEKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + ++ + ++ LL EGY+ L++L S +Y + Sbjct: 59 MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182 + +RI L+E +GLI L+ G I +A N S+ + + + ++F + Sbjct: 107 DNRELRISKEILKE-HNKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + + L +L LVATNN ++ + YE D+++ + + Sbjct: 166 YLEIQANELPENKVINDKFYDLVKEKKLELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225 Query: 242 QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 K+R R S+ +A+ENT IA C+ ++ P + Sbjct: 226 DKNRKRAVSKELYLKSKEEMQRSLDEKFHKAIENTNYIASLCNLEIEFGNLQFPYYEVPN 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D +RL++EL+VI +M +SGYF++ Sbjct: 286 QYSGM---DEYLKAICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++DRL KL+ Sbjct: 397 IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + + ++ + D + +++++S ++E RH STHAAGI+I L Sbjct: 457 SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + + ++L Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFEMLSQGDSTGVFQLESPGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP + AA MT E+ + + DA++ I I PP+VNTP F++ ++ I Sbjct: 754 AYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGIS 813 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK +G A+ I+E + L++F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNIGLNLAKKIVEDYEKHGTYTKLDEFMIRNKKNGMNKRALEALILSGALDELE 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + + K + N+F T + K L N + E Sbjct: 874 GNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTIN-KFALTNSDDFNLDEKMTKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD Y+ I+ I E I+ + ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDKYRDIVTAFSINKLSEI-DIEESKVIKTFGTITGLKKVLTKKDEQM 991 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + ++ FP Sbjct: 992 ALFSILCYDRKISCIVFP 1009 >gi|328676562|gb|AEB27432.1| DNA polymerase III alpha subunit [Francisella cf. novicida Fx1] Length = 1159 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 387/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ R+ E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRVQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINTKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|330814006|ref|YP_004358245.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487101|gb|AEA81506.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 1140 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 444/1040 (42%), Positives = 663/1040 (63%), Gaps = 29/1040 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ F H +VH+ YS+ EGAL + ++ ++ ++ I+D+ N+ LEFSQ+ Sbjct: 1 MPENNYFNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISK 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG QPIIG Q++ +N + I L+ GY+ L++L S YL + Sbjct: 61 AGCQPIIGTQINFSFSEN---------NLEKMGKISLVAKNDTGYKNLLKLSSSSYLSIE 111 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + + L + ++GLI+L G S + N+ +E L +K F LY+ Sbjct: 112 KNEDPHCDIQELID-NSDGLIVLVGASHSLLSSLVLENNILDSELLLQKIQKFFEGNLYI 170 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 +QRH +++ E+Q++ + +P++AT+ +L ++ YEAHD + V T V+ Sbjct: 171 EIQRHNEPHEQALETQLLYFSEKFSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDI 230 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R + +HY K+ EM +F DLPEALEN +A RCS+ + + + Sbjct: 231 KRLRYSEEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLT-----SKPMLPNFNTE 285 Query: 304 QKEEENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 +EL+ A GLE RL + Q Y++RL++E+ +I++MKFSGY Sbjct: 286 SSNVNDELKINANKGLEDRLKNFILINIADEDQRLATKQVYKERLNYEIEMISKMKFSGY 345 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV+D+I+WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP++F L+FERFLNPDR+SMP Sbjct: 346 FLIVSDYIKWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIKFGLIFERFLNPDRISMP 405 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ+ RD+VI YV++KY + +VAQIITFG LQA+ ALRD+GR + +PY +VD+L Sbjct: 406 DFDIDFCQEDRDKVINYVKDKYKN-KVAQIITFGKLQARMALRDIGRVIGLPYGRVDQLS 464 Query: 477 KLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K+IP DP+ P++ +++A + R +EA+ DP++++L+ ++ KLEGL+R+ +THAAGIVIG Sbjct: 465 KMIPFDPSRPLTLAESVAMEPRLQEAQKEDPTIEKLINLALKLEGLFRNIATHAAGIVIG 524 Query: 536 DRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 D+ L+++VP+Y+D S +PVTQF+M W E+AGL+KFDFLGLKTLT+++K+++ + + Sbjct: 525 DKNLTEIVPLYKDHDSSIPIPVTQFDMNWSEQAGLVKFDFLGLKTLTVIKKTIELIEKDS 584 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 K+D+ IP DD +T+ LL++ T+GIFQLES+GMR+ L+ M P+ EDIIALV+LYRPG Sbjct: 585 QKLDIEKIPLDDSKTFELLSSGETMGIFQLESAGMREVLKQMIPNKFEDIIALVALYRPG 644 Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 P+ NI YNNRK+G E+ +HP I+ +LKET GVIIYQEQVMQIAQ LSG+S +AD+L Sbjct: 645 PMQNIPSYNNRKHGLEEPDYLHPKIENILKETYGVIIYQEQVMQIAQALSGFSAGKADIL 704 Query: 714 RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+AMGKK EMD+QK+ FI GA KN I K AV IF+L+ KFA YGFNKSHAAAYA+I+ Sbjct: 705 RKAMGKKKSAEMDRQKKDFIEGAIKNDIPKEQAVYIFQLVEKFAQYGFNKSHAAAYALIA 764 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 YQTA++KTHYP+ F +ASM++EM N +K+ +F ++ ++ +I++ P +N DF D Sbjct: 765 YQTAYLKTHYPLSFFSASMSMEMSNTDKLNQFYEELKRLSIKVHNPCINHCFADFVPKDG 824 Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I+Y+L+ IK VG ++++ + F S+EDF RV SK +N+ LE L+ AGA D Sbjct: 825 TIFYALSGIKAVGFEAISNVIKEREENGKFLSMEDFLKRVSSKDINKLQLEGLIKAGAFD 884 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 C +R +L +++ I K ++ ++N N+F + KI + + Sbjct: 885 CIDKNRSKLYENVPEIIKQSKSYDENLQVDQINLFESQTNDNF-KINFTVHPAWDEPEKI 943 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + E +GF+ S HPL YK IL + ++ N L+ V++ Q+KKT KG Sbjct: 944 KREFESIGFFVSEHPLKNYKHILDNYSVVQFQSFSDNKNINECMLSGTVMAIQEKKTAKG 1003 Query: 1013 SRIGWVTFSEPAKEYEANFF 1032 V FS+ ++ +E F Sbjct: 1004 MPFAIVKFSDLSRMFEFFIF 1023 >gi|229006940|ref|ZP_04164570.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4] gi|228754340|gb|EEM03755.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4] Length = 1096 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 355/1015 (34%), Positives = 573/1015 (56%), Gaps = 46/1015 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ + +++ITD N ++ + F + G++PIIG + ++ Sbjct: 1 MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 +VLL GYQ L+++ S + + I WL Sbjct: 61 E-----------EQSYPLVLLAENEMGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200 +GLI ++ G G I++ ++AE+ ++ +FG Y++LQ H D ++ Sbjct: 105 KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259 Q A +P+VATN+ ++++ D + L++V T ++ DRPR T +YLK+ +E Sbjct: 164 PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M ++FS EAL+NTV IA RC + H LP+F + + LR GL Sbjct: 224 MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 G +R+RL+ EL VI+ M FS YFLIV DF+++ ++ I GPGRG Sbjct: 280 NK-------RYGAVQDVHRKRLNHELEVISCMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF RRDE+IRYV++KYG Sbjct: 333 SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 RVAQI+TFG+L AKAA+RD+ R + +P +D KLIP+ + + R Sbjct: 393 QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 E + +R+ EI++++EGL RH S HAAG+++ PL+ V + + +D+ VTQ+ Sbjct: 452 EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 + +E+ GL+K DFLGL+ LTLL+ L + + G ++D+ +P D +T+ LL T Sbjct: 511 AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQLES GMR L ++P+ EDI+A+ +LYRPGP++ I + K+GK +I +H + Sbjct: 571 GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+LK T GVI+YQEQ+MQIA L+G+SL EAD+LRRA+ KK +E +D++++ F+ G + Sbjct: 631 KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 NG +T A I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++ + N Sbjct: 691 NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858 +KI ++ ++ ++ ++PPS++ +F++ N I YSL +I+ +G T ++E Sbjct: 751 EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 PF L +FC R+ +K + R LE+ V+AG D F SR L S+ +YA Sbjct: 811 RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 ++ K + + + NE+ LGFY S +P Y +++++ Sbjct: 865 ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 I +++ R R V + +T+K ++ +VTF + E EA FP Sbjct: 919 EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972 >gi|237739930|ref|ZP_04570411.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229421947|gb|EEO36994.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1133 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 371/1038 (35%), Positives = 589/1038 (56%), Gaps = 38/1038 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSLLEG S+++ L + ++A+TD N+F A+EF +KA Sbjct: 1 MENN--FVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L + ++ + ++ LL EGY+ L++L S +Y + Sbjct: 59 MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182 +RI L+E ++GLI L+ G I +A N S+ + + + ++F + Sbjct: 107 DNGELRISKGILKEY-SKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA + LVATNN ++ + YE D+++ + + Sbjct: 166 YLEIQANELPETKVINDKFYDLAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225 Query: 242 QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 K+R R S+ +A+ENT IA C+ ++ P + Sbjct: 226 DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIEFGNLQFPYYEVPN 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L++ ++ + +D +RL++EL+VI +M +SGYF++ Sbjct: 286 QYSGM---DEYLKSICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L + ++DRL KL+ Sbjct: 397 IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 + + + ++ + D + +++++S ++E RH STHAAGI+I L Sbjct: 457 SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E GL+K DFLGLK L+ +Q+++D++ + + + ++L Sbjct: 514 DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + + +L+ + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A +N ++ A IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFTIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A++K HYP + AA MT E+ + + DA++ I I PP+VNTP F++ ++ I Sbjct: 754 AYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGIS 813 Query: 837 YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK +G A+ I+E + L++F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNLGLNLAKKIVEDYEKYGAYTKLDEFVLRNKKNGMNKRALEALILSGALDELE 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + + K + N+F T DK L + + E Sbjct: 874 GNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKT-IDKFVLTNSEDFSLDEKLTKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LGFY S HPLD Y+ I+ I E ++ ++ ++ T+K ++ Sbjct: 933 KEFLGFYLSSHPLDKYRDIVTIFSINKLSEI-DMEETKVLKTFGTIMGLKKLLTKKDEQM 991 Query: 1016 GWVTFSEPAKEYEANFFP 1033 + + FP Sbjct: 992 ALFSILCYDRVISCIAFP 1009 >gi|297583642|ref|YP_003699422.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142099|gb|ADH98856.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1126 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 364/1029 (35%), Positives = 577/1029 (56%), Gaps = 38/1029 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++ HL VH+ +SLL + ++++ ++ ++ A+A+TD NN++ A+ F + A GI+P Sbjct: 2 AYAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ++ + S++L + GYQ L+ LV+ + Sbjct: 62 ILGVELSMERLS-------LNSGRDVPTSLLLYAKSFRGYQSLVRLVTMACAREA---EP 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + + L+ G E L++++ S G + + A L T + +FG+ +YV +Q Sbjct: 112 YVTMDELEAEGEE-LVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQN 170 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R R ++ + +P+VATN+ L + + A L A+ + + D Sbjct: 171 HWLRWERERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESL 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 PD YLKN EM F+ AL+ T EI +C L + ILP + + + Sbjct: 231 RAPDMYLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGE----TA 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LRN GL R + +R+RL+ EL VI M + YFLIVADF+ +A Sbjct: 287 ASLLRNWCEKGLYERYH-------APEEKHRERLEKELQVIHDMGYEDYFLIVADFMDYA 339 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +N I GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R+SMPD DIDF R Sbjct: 340 HRNGILTGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDR 399 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D+VI YV +YG +VAQI+TFG+L AKAALRD R L +P + VDRL KLIP P + Sbjct: 400 DQVIHYVHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTI 459 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + F +A P D LL+ + +EG+ RH S HAAG+V+ PL+ +VP+ Sbjct: 460 TAA-LEEAPAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQ- 517 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 L +TQF M +E GL+K DFLGL+ L+ +++ + + ++ + DL+ +P +D Sbjct: 518 PSNDGLTITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGEALDLTRLPLEDE 577 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 + LL T GIFQLES GMR+ L+ ++P+ EDI+A+ +LYRPGP++ I +Y RKN Sbjct: 578 RMFALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQIPLYIRRKN 637 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G+E + H + +L T GV+IYQEQ+MQIA ++G+SL+EAD+LRRA+ KK KEE++ Sbjct: 638 GEEPVTYPHEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKKEELE 697 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + + F+ GA G ++ A ++EL+ +FA+YGFN+SHA AY++IS + AW+KT +P Sbjct: 698 RSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTVHPEA 757 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F+AA M + +K+ ++ +A+Q +++ PSV F V + I +L I+ G Sbjct: 758 FMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVNNGEIVMALQVIRHTG 817 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 A I+ A + PF SL DFC RV K ++R+ +ESL+ AGA+D FG R L SL Sbjct: 818 HHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSLFASL 877 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 ++ ++ + + ++F E+G + + + + E+ V+GFY SG Sbjct: 878 EDAFQFG-----DEDAEGFSLFEQEEG----EPDYRQGGRMTLMDKLDEEREVMGFYLSG 928 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP++ +L+ + E++ +RLA M+ + +T+KG ++ +V+ S+ Sbjct: 929 HPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFVSMSDET 988 Query: 1025 KEYEANFFP 1033 + FP Sbjct: 989 GAMDITVFP 997 >gi|289548089|ref|YP_003473077.1| DNA polymerase III subunit alpha [Thermocrinis albus DSM 14484] gi|289181706|gb|ADC88950.1| DNA polymerase III, alpha subunit [Thermocrinis albus DSM 14484] Length = 1150 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 371/1058 (35%), Positives = 543/1058 (51%), Gaps = 67/1058 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+GA+ + ++ ++ A A+AITD NLF LEF + GI+P Sbjct: 3 DFVHLHLHTQYSLLDGAIKIKDLAERAQAYGYRAVAITDHGNLFGLLEFYKTLKEKGIKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++G + +G I+L+ EG + L L S Y + Sbjct: 63 LLGMEAYFTTGSRFDRKGKGSDDNLTDRINHHIILIAKDQEGLKNLFRLSSLSY-REGFY 121 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 RI LQ+ GLI +T G + AE+ + K LFGD LY+ L Sbjct: 122 YKPRIDYELLQKYHR-GLIAVTACLKGVPTYYASMGEERKAEEWVKKLKDLFGDDLYLEL 180 Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV----VS 241 Q + ++ ++ ++ +A + LVAT ++ +L ED AH VLMA+ Sbjct: 181 QANGLPEQETANRVLINIAKRFGVKLVATADAHYLDPEDKTAHSVLMALQMKKTLQDIQK 240 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + + V H+ + + + + Sbjct: 241 EGLKYSVCDLHFAPPQEMWERFRGKFDGWEDALKNTLEVAEKCADSFPQLENKDYLLPKA 300 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 EE L + A GL R A G +++Y RL++E+ + RM F+GYFLIV Sbjct: 301 YEGVEEGQLLEDLAREGLRRRQALGHCP---DSKEYWDRLEYEIEQVRRMGFAGYFLIVQ 357 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI WAK +PVGPGRGS AGS+ AYAL ITD+DP++ LLFERFLNP+R+SMPD D+D Sbjct: 358 DFINWAKNQGVPVGPGRGSAAGSLLAYALGITDVDPVKHGLLFERFLNPERISMPDVDVD 417 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC + R++VI+YV+ KYG ++VAQIIT+ ++AK ALRD RAL +PYS DRL KL+P Sbjct: 418 FCMEGREKVIQYVREKYGEDKVAQIITYNVMKAKQALRDAARALGLPYSVGDRLAKLVPP 477 Query: 482 DP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQKLE 519 +SL+ + FR+ D + R++EI+ KLE Sbjct: 478 GDVQGSWLSLEEMVHTPLEELLEKYGHHRTDIEENVKTFRQLMETDAEIRRVVEIALKLE 537 Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 GL RH S HAAGIVI PL ++VP Y D TQ +M +EK GL+K DFLGLKTL Sbjct: 538 GLVRHTSLHAAGIVISPLPLEEVVPTYYD--DGQVATQLDMGQLEKLGLVKMDFLGLKTL 595 Query: 580 TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 T L + + +R VD IP DD T+ LL T G+FQLES GM++ L + PD Sbjct: 596 TELNAMRNLIRERHKADVDFLKIPLDDERTFELLRKGNTSGVFQLESKGMQRLLSKLSPD 655 Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 ED++A ++LYRPGP+ + + Y RK+GKE++ P ++P+LKET GV +YQEQ+M Sbjct: 656 RFEDLVAAIALYRPGPLKSGLVDSYVKRKHGKEEVEYPFPELEPVLKETYGVWVYQEQIM 715 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 + +Q+L+G++ EAD LR+A+GKK KE M +E+FI GA + G + ++E KF Sbjct: 716 KASQILAGFTPGEADTLRKAIGKKDKELMASLREKFIRGAVERGYKEEKITKLWEDFEKF 775 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSH+ AY +SY TA++K HY EF A ++ E ++ + + DA++ I I Sbjct: 776 ASYSFNKSHSVAYGYLSYWTAYLKAHYTEEFFAVKLSYEKNDAKFL-ALVNDAKKHRITI 834 Query: 817 MPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 +PP +N V F + +R + + LA IKG+G TA I++A + + Sbjct: 835 LPPDINKSHVHFVIEGDRTLRFGLARIKGIGEDTAYQIVKARK----TTWTQPSQVARAA 890 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 LN++ LE+L+ AGA D G SR LL++L++ KN ++F + Sbjct: 891 GLNKKALEALIKAGAFDFTGKSRTALLKALES---------KNALLGGVSLFEKNSQSTE 941 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 D+ F E+ VLGFY + HP+DV++ L E V + G Sbjct: 942 DR----------QEDIFHYEKEVLGFYLTRHPIDVWEGFLED--TCKKLEEVEELEGGPY 989 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A + + KKT K + + ++ P Sbjct: 990 LFAGSLTDIKVKKTTKNTLMATAHLTDRTGMVPLIIPP 1027 >gi|56707551|ref|YP_169447.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110670022|ref|YP_666579.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|254370074|ref|ZP_04986080.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|56604043|emb|CAG45035.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320355|emb|CAL08418.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568318|gb|EDN33972.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|282158705|gb|ADA78096.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis NE061598] Length = 1159 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 387/1043 (37%), Positives = 588/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+ +++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + +I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|126641511|ref|YP_001084495.1| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978] Length = 1155 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 369/1009 (36%), Positives = 563/1009 (55%), Gaps = 47/1009 (4%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+A+TD +NL +A++F GI+PI+G + ++ Sbjct: 1 MPALALTDLSNLHAAVKFYNSCLKKGIKPILGSTIRLN---------------DAQHRAT 45 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 LL + G++ L E+VSR ++ Q + W+ E + +I+L G + + Sbjct: 46 LLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLEQHQD-IIVLLG-QHSDVGQMLC 103 Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLF 219 ++ Q AE L + + FG+R+Y+ L R R + + +LA + + +VA N+ F Sbjct: 104 SSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFIQEAAKLAAKYNIGVVAHNDVHF 163 Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278 + +ED+EAH+ + +A V++ RPR +P+ Y K EM+ +FSD+P A+ENT +IA Sbjct: 164 IEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIA 223 Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV------RLAQGAIAKGY 332 +RC+ L++ LP + + I + + + GLE + + Sbjct: 224 KRCNVTLKLGTYFLPEYPIPDGFTI----DTYFEHLSKEGLEERLNYLYPVEKRGEDWPE 279 Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392 + Y +R+D+E+ +I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L I Sbjct: 280 IRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKI 339 Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452 TD+DPLR+ LLFERFLNP+R+SMPDFD+DFC RD VI YV YG E V+QI TFG++ Sbjct: 340 TDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTM 399 Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-- 510 AK A+RDV R L Y DR+ K++P P AI + + ++ + D Sbjct: 400 AAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLATAIEMEPQLKDIVTNPSNPDNDD 459 Query: 511 ---LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567 + E++ KLEG+ R+ HA G+VI ++ + D V Q++ +E AG Sbjct: 460 ASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAG 519 Query: 568 LIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLE 624 L+KFDFLGL+ LT+++ ++ + + ++S +P DD + Y + T +FQ E Sbjct: 520 LVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFE 579 Query: 625 SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684 S GM++ L+ +P E+IIA VSLYRPGP+D I + + + +HPL++ +L+ Sbjct: 580 SVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFI-HRMHGGEFEYLHPLLEGVLEP 638 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T G+++YQEQVMQ AQ+ +GY+L AD+LRRAMGKK EEM KQ++ F+ GA + GI ++ Sbjct: 639 TYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDES 698 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 A +IF+ + KFA YGFNKSHAAAYA+++Y TAW+K HYP EF+AA M+ EM N + + Sbjct: 699 TANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVF 758 Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIME-ASADKPF 862 D R ++++PPSVN F D++ I Y L AIKGVG + +++ P+ Sbjct: 759 LIDDCRNNGLEVLPPSVNMSTYHFHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPY 818 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 L DFC R+D KK+N+R LE+L+ AGALDC G R L+ L + A+ NR + Sbjct: 819 TDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESG 878 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 ++F + + + + VR + E+ LG Y +GHP+DVY+ L+ Sbjct: 879 IMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAK 936 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 E AT RG A +V+ +R+ V + E + Sbjct: 937 LNEITATRRGVTTVYAGLVLDVANFP----NRVVIV-LDDGTARIEVSC 980 >gi|225630393|ref|YP_002727184.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi] gi|225592374|gb|ACN95393.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi] Length = 1158 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 468/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 51 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 IGC + + + I+LL +GY L+ LVS + + Sbjct: 111 IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 157 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + + GLI LTG G + + + EK L F LYV LQRH Sbjct: 158 YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 209 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 210 GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 269 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 270 TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 325 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 326 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 382 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 383 ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 442 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 443 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 500 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 501 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 560 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K+D+S +P DD + Sbjct: 561 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 620 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 621 TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 680 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK Sbjct: 681 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 740 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 741 QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 800 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 801 FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 860 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + A I+ + + +F +N+R LESL+ +GA D +R QL +S+D Sbjct: 861 SIAEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 918 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A +++R + +F K LE + + E+E LGFY + HP Sbjct: 919 LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 975 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I E + A ++++ + + + +G R +T S+P Sbjct: 976 LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 1028 Query: 1028 EANFF 1032 E F+ Sbjct: 1029 EIAFY 1033 >gi|58696665|ref|ZP_00372218.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537166|gb|EAL60270.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 1120 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 468/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 13 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 72 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 IGC + + + I+LL +GY L+ LVS + + Sbjct: 73 IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 119 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + + GLI LTG G + + + EK L F LYV LQRH Sbjct: 120 YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 171 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 172 GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 231 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 232 TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 288 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 345 ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 404 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 405 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 462 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 463 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 522 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K+D+S +P DD + Sbjct: 523 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 582 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 583 TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 642 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK Sbjct: 643 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 702 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 703 QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 762 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 763 FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 822 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + A I+ + + +F +N+R LESL+ +GA D +R QL +S+D Sbjct: 823 SIAEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 880 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A +++R + +F K LE + + E+E LGFY + HP Sbjct: 881 LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 937 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I E + A ++++ + + + +G R +T S+P Sbjct: 938 LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 990 Query: 1028 EANFF 1032 E F+ Sbjct: 991 EIAFY 995 >gi|254372464|ref|ZP_04987953.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. novicida GA99-3549] gi|151570191|gb|EDN35845.1| DNA polymerase III alpha subunit [Francisella novicida GA99-3549] Length = 1159 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKRLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFCSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|158520278|ref|YP_001528148.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] gi|158509104|gb|ABW66071.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3] Length = 1217 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 332/1044 (31%), Positives = 527/1044 (50%), Gaps = 44/1044 (4%) Query: 5 LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + P FVHL VH+ YSLL+G + ++++ + + PA+AITD +F ++F +A Sbjct: 1 MTTVPDQFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAV 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 AGI+PIIGC+ + + T + +VLL T EGY+ L L + D Sbjct: 61 RAGIKPIIGCECYVAPRTIADKTPADHA---GLSHLVLLAETMEGYRNLCRLATIA-QQD 116 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-L 182 RI + LQ+ +GLI L+ G I A+ + + GDR Sbjct: 117 GFFHKPRIDKALLQK-HAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNF 175 Query: 183 YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ +Q + ++ + ++ ++ +PLV TN+ +L ED AH++ + + + Sbjct: 176 FLEVQNNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIH 235 Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 DR + T K+ EM P A NTV IA RC A P Sbjct: 236 DTDRLKFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPG 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 K + L + A+AGL+ R + Y+QRL +EL VI M GYFLI Sbjct: 296 ----KTMADMLEDSAMAGLKKRWQHICKQSSHADKSVYQQRLAYELAVINEMGAPGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 +ADFI +AK N I GPGRGS GS+ Y L IT +DP+ LLFERFLNP+R MPD D Sbjct: 352 IADFIAYAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDID 411 Query: 420 IDFCQDRRDEVIRYVQNKYGH----ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 +D C + R+++ +Y+ +KY + A I T G+++++AALR+VGRAL MP V+++ Sbjct: 412 VDICINGREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKV 471 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 KLIP P A+ + R + P L+++ +KLEGL H +AAGIV+ Sbjct: 472 AKLIP--PGARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLS 529 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594 D+PL+ P+YR +TQ + + +E GL + D LG++ LT++ +L + + Sbjct: 530 DKPLTCYTPLYRF--KGEMITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQ 587 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 DLS I D T LL+ T G+FQL S+GM++ L +P + ++ L++LYRPG Sbjct: 588 TPDLSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGL 647 Query: 655 IDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 ++N +V + + + ++P+LKET G+ +YQEQ+MQ Q+L+GY+ ++D Sbjct: 648 LENGMVADYLGRKQGLKDTTYPTAKLEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDD 707 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 R+AMGK+I E++ ++RFI+GA+ GI K A+ +FE L F YGFNK+H+ AYA I Sbjct: 708 FRKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFI 767 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 ++Q A +K H+P EF+A + + V++I + + R NI ++PP VN F V + Sbjct: 768 AWQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVVN 827 Query: 833 NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL----NRRVLESLVF 887 +I LA +K I+ A PF SL DFC+R+ + + +R+ LE+LV Sbjct: 828 GQIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVK 887 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AGA D G +R Q++ LD I K + +++ R L + + Sbjct: 888 AGAFDSTGATRSQMMAVLDEILKPSLDLQQPRK--------------PAVPALPEVGEWS 933 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 +R E+R +G + P L++ +G + + + + + K Sbjct: 934 PHLRRALEKRAMGICLTPAPPAYCHAKLKRPTTTPLCSIYENPQGGRVAVDGIWKAVEYK 993 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031 + + G + + E Sbjct: 994 QGKDGCPMALAELEDNNAAIEVVI 1017 >gi|34763539|ref|ZP_00144477.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886788|gb|EAA23923.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1093 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 374/1034 (36%), Positives = 584/1034 (56%), Gaps = 40/1034 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA GI+PI Sbjct: 4 FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L I +D + S+ LL GY+ L++L S +Y ++ + ++ Sbjct: 64 IGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188 I L+E ++ LI L+ +G I +A NSS + + + ++F + Y+ +Q Sbjct: 112 INKEVLKEY-SQDLIALSSSINGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQA 170 Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + LA H+L LVATNN ++ + YE D+++ + V +K+R R Sbjct: 171 SELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKR 230 Query: 248 VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + F +A+EN IA C+ + P + Sbjct: 231 AISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYYEVPSEYSGM- 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L+ ++ + +D RL++EL+VI +M +SGYF++V DFI Sbjct: 290 --DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFIS 341 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++ Sbjct: 342 YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KL+ + Sbjct: 402 RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLVSHS--- 458 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + + ++ + D + ++++++ ++E RH STHAAGI+I L + VP+ Sbjct: 459 QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL IP D Sbjct: 519 YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662 D + + +L+ + G+FQLES+G+R+ ++ ++PD EDI+AL++LYRPGP+ + + + Sbjct: 579 DKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRAMGKK Sbjct: 639 NRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 M + +E+FI A KNG + + IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K H Sbjct: 699 AIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKVH 758 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP + AA MT E+ I + DA++ I++ P++N+P F+V + I YSLAAI Sbjct: 759 YPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAAI 818 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD +R + Sbjct: 819 KNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 S+D + Y+ K + N+F T D+ L + + E+ LGF Sbjct: 879 FLSIDKVLDYSSKASKTDEIQQMNLFGEATKT-IDRFNLAISEDFSLDEKLNKEKEFLGF 937 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 Y S HPLD +K I+ I E ++ + + ++ T+K ++ Sbjct: 938 YLSSHPLDRHKDIILAFRINKLSEI-DLEGSQIVKTFGTITNLKKIITKKEEQMAMFNLI 996 Query: 1022 --EPAKEYEANFFP 1033 + FP Sbjct: 997 CYDRT--ISCIAFP 1008 >gi|89255882|ref|YP_513244.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115314369|ref|YP_763092.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica OSU18] gi|156501865|ref|YP_001427930.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009646|ref|ZP_02274577.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica FSC200] gi|290953372|ref|ZP_06557993.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica URFT1] gi|295313376|ref|ZP_06803984.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica URFT1] gi|89143713|emb|CAJ78912.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115129268|gb|ABI82455.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|156252468|gb|ABU60974.1| DNA polymerase III alpha subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1159 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 386/1043 (37%), Positives = 584/1043 (55%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 WL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I + IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|33519751|ref|NP_878583.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus] gi|33504096|emb|CAD83357.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus] Length = 1166 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 407/1053 (38%), Positives = 611/1053 (58%), Gaps = 45/1053 (4%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P+FVHL V S YS+++G N +L+K + PA+A+TD +NLF ++F +C GI Sbjct: 2 NPNFVHLHVRSDYSMIDGLSKTNALLEKAVSLNMPALALTDFSNLFGFIKFYDYSCKLGI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G I + LV +GYQ L+EL+SR Y Sbjct: 62 KPIAGADFLIQDISCYS---------DNWSKLTCLVLNNQGYQHLVELISRAYKYKSNTN 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I SWL E EGLI+L+GG G I + N EK LL + K F +R Y+ L Sbjct: 113 YPIIQRSWLMEY-NEGLILLSGGCDGDIGKYLLRNKRNDIEKTLLFYHKYFPNRYYIELI 171 Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245 R ++ V+L+ LP+VATN+ F+ ++D++AH++ +A+ VV++ + Sbjct: 172 RTGRVHEESYLKLAVELSRIKGLPVVATNDVRFVEKKDFQAHEIRVAIHAGVVVNKIQQS 231 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + ++K+ EM +F+D+PE+L NTVEIA+RC+F++ + Sbjct: 232 NKYSAQQFMKSSQEMCHLFNDIPESLVNTVEIAQRCNFMINF-----KGPFLPKFPTGSL 286 Query: 306 EEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 EN L +A GLE L + + Y RL+ EL VI +M F GYFLIV + Sbjct: 287 STENFLVTQARLGLEKRLKFLFPNSKERQVKRSVYDIRLNQELQVINQMGFPGYFLIVME 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FIQW+K NNIPVGPGRGSGA S+ AY L IT++DP++F LLFERFLNP+R+SMPD DIDF Sbjct: 347 FIQWSKDNNIPVGPGRGSGASSLVAYVLRITELDPIKFDLLFERFLNPERISMPDLDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 C + RD VI +V YG V+QIITFG++ AKAA+RDVGRAL PY V+RL KLIP + Sbjct: 407 CMEHRDLVIDHVAQMYGSHAVSQIITFGTMAAKAAIRDVGRALGYPYVFVNRLAKLIPLE 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + + + D V L+++S +LEG+ R+ S HA G+VI ++ Sbjct: 467 PGMTLRKACTTIN-QLKLMYNTDEEVKILIDLSYQLEGIIRNVSKHAGGVVIAPNKITDF 525 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597 P+Y D + +TQF+ IE+ GLIKFDFLGL+TLT + +++ + R + Sbjct: 526 SPLYYDDNYNHSMTQFDKDDIERIGLIKFDFLGLRTLTTVNRAIKMINDRKSKSNSLICN 585 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 ++LIP +D ++ LL T T GIFQLES G++ ++ ++PD ED+IAL++L+RPGP+ + Sbjct: 586 INLIPLNDRNSFRLLQTAKTTGIFQLESKGIKMLIKRLKPDHFEDLIALIALFRPGPLQS 645 Query: 658 IVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 +V N + H L+ P+LK T G+I+YQEQVMQIAQ+L+GY+L +A Sbjct: 646 GMVDNFINRKNGREIISYPDVKWEHELLKPVLKSTYGIILYQEQVMQIAQVLAGYTLGKA 705 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRA+GKK E+M KQ+ F +GA +NGI++T++ IF+L+ KFA YGFNKSH+AAYA Sbjct: 706 DILRRAIGKKKYEDMVKQRAIFNAGAQRNGINQTLSKKIFDLMEKFAGYGFNKSHSAAYA 765 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +ISYQT W+K HYP EF+A+ ++ +MDNV +I + R+ ++++ P++N+ F V Sbjct: 766 LISYQTLWLKAHYPAEFMASILSSDMDNVNRIIILIHECRRMGLKVLSPNINSSRYFFYV 825 Query: 831 GDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 +N I Y + AIKG+G + I+ + D F SL DFC RVD+ K+N+R++E L+++ Sbjct: 826 NNNQEIVYGIGAIKGIGKLSIDSIVASRDCDGEFHSLFDFCVRVDNSKVNQRIIEKLIYS 885 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--- 945 GA D FG R +L+ SL+ A K + + IF + + T+ K + Sbjct: 886 GAFDFFGIHRSELISSLNVTICQAIQYAKRKQCQQIGIFEDDIQEHTIVDTIPKCNSVIK 945 Query: 946 --ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLAA 999 +NS + E+ LG Y + HP++ Y +++ I + +R N + Sbjct: 946 LHQNSLIILTKEKEALGLYLTDHPVNQYMNEVKQY-IPEISKIQNVLRKIVINNTVCTFG 1004 Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ S K T+KG+ + + + + E F Sbjct: 1005 LLSSIHIKSTKKGNYMLFGILEDQYSQLEIIVF 1037 >gi|78188863|ref|YP_379201.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3] gi|78171062|gb|ABB28158.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3] Length = 1189 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 366/1072 (34%), Positives = 572/1072 (53%), Gaps = 62/1072 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL H+ YS+ + + + A P IA+TD +F+ E +A GI+ Sbjct: 2 DFIHLHTHTHYSMQSSPIFPSELFKAAKAFGMPTIAVTDYGAMFNMPELFSEAKQVGIRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + D + + + PS+VLLV GY+ L L+SR Sbjct: 62 IIGSEVLLLEHDEHQTSRHTVS-----PSLVLLVKNETGYRNLCILLSRASREGFVNGMP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L++ +GL+ L+ +G I RA S A ++++FG Y+ LQRH Sbjct: 117 HVESRLLEQYH-DGLLCLSAYGAGRIGRALMAGSLDEAANFSAYYQEIFGSNFYLELQRH 175 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247 +D Q++ LA + LVATNN +L + D + L+A +S Sbjct: 176 NTSFDALLNEQIIGLAQKFSIELVATNNVHYLRQNDAGCYRALVANRTKEKLSGPVSAAL 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +HYLK+ EM +FS+ LENT+ IA +C+F P LPRF D +E Sbjct: 236 PGSEHYLKSAEEMQQLFSNEYGELENTLRIAEQCTFTFSDKEPALPRFPLP---DGFSDE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR+ G + A+ + +G ++ ++R++ EL VI +M FS YFLIV+D I + Sbjct: 293 ASYLRHLTWEGAAEKYAK-SEEEGISQEEVKERIELELGVIEKMGFSSYFLIVSDLIAAS 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT +DPLR+ LLFERFLNP+R+SMPD DIDF + Sbjct: 352 RRMGYSVGPGRGSAAGSIVAYLTGITRVDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG + VA++I G+L AKAA+RD GR L++P VD+L KL+P P + Sbjct: 412 QKVLEYTVEKYGADSVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ D RE + P + L++ ++ +EG R+ S HA +VI D L + VP+Y Sbjct: 472 E-KALTDSRDLREMAESTPELKTLMQYARSMEGRARNVSMHAGAVVITDGALEEQVPLYV 530 Query: 548 -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIE AGL+K D+LGL+T Sbjct: 531 SNKIETEERRFADELDLDQPDNGKAKAGESNDEKQVVTQFDKNWIETAGLLKIDYLGLET 590 Query: 579 LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R +DL +P D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 LAVIDETLRMIKRRHGLDIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ V + +RK+G+E I +HP+++ +LKET GVI Sbjct: 651 TQIGDIIAMSALYRPGALNARVDEHRNAVDLFVDRKHGREAIDYMHPMLEGILKETYGVI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+S+++AD LR+AMGKK E M+K K FI+G G+ T+A + Sbjct: 711 VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFIAGGVAQGVHDTLATRV 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+L+++FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +A Sbjct: 771 FDLMSEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDTERMKHLTDEA 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIM--EASADKPF 862 + F I +PPS+N F V + + I L+AIK VG AR I+ + F Sbjct: 831 KSFGIATLPPSINKSDALFSVENSSNGRSAIRVGLSAIKQVG-GAARAIVTSRMRRKRDF 889 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 ++ D + VD + +NR+ LE L+ AGA D F R +LL ++D K+ Q + T Sbjct: 890 LNIFDLTASVDLRVMNRKALECLILAGACDDFDPHRARLLANIDKAIKFGQMQNRTVTMG 949 Query: 923 HENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F++E+G D L+ + + +E++++GFY S HPL Y+ + Sbjct: 950 QCGFFSNEEGQEGDIHYPELDNADMMPDGEKLLHEKKLVGFYLSRHPLSAYRRDWQAFAN 1009 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++ +VVS + + +KG ++ + + + + F Sbjct: 1010 LPLNT-KEIVKNKQYKVIGVVVSLKPYQDKKGKQMLFGAIEDFTGKADFTIF 1060 >gi|254304372|ref|ZP_04971730.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324564|gb|EDK89814.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1133 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 382/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E + FVHL +H+ YSL EG S+++ L K ++A+TD N+F A+EF QKA Sbjct: 1 MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG +L I +D + S+ LL GY+ L++L S +Y + Sbjct: 59 MGIKPIIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELY-KNN 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182 + +++ L+E ++ LI L+ +G I +A NSS K + + ++F + Sbjct: 107 ENRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165 Query: 183 YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ +Q + + + LA H+L LVATNN ++ + YE D+++ + V Sbjct: 166 YLEIQANELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225 Query: 242 QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +K+R R + + F +A+EN IA C+ + P + Sbjct: 226 EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYYEVPS 285 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + L+ ++ + +D RL++EL+VI +M +SGYF++ Sbjct: 286 EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V DFI +AK+ IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D Sbjct: 337 VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L + ++D+L KL+ Sbjct: 397 IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLV 456 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 A + + ++ + D + ++++++ ++E RH STHAAGI+I L Sbjct: 457 SPFQALEKT---LKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 + VP+Y D + + TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + V +DL Sbjct: 514 DKTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNVDIDL 573 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD + +H+L+ + G+FQLES G+R+ ++ ++PD EDI+AL++LYRPGP+ + Sbjct: 574 YKIPLDDKKVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633 Query: 659 V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + + NRKNGKEKI H ++ +LKET GVI+YQEQVM+IA ++ YSL EAD+LRRA Sbjct: 634 MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK M + +E+FI A NG + + IFEL+ KFA YGFNKSH+ AYA+ISY T Sbjct: 694 MGKKNFAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836 A+ K +YP + AA MT E+ I + DA++ +++ P+VN+P F+V + I Sbjct: 754 AYFKAYYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEGIT 813 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 YSLAAIK G T A+ I+E + + +LE+F R +N+R LE+L+ +GALD Sbjct: 814 YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + S+D + Y+ K + N+F T DK L + E Sbjct: 874 GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKT-IDKFNLAISEDFTLDEKLNKE 932 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 Q LGFY S HPLD YK IL IK E I+ + + ++ T+K ++ Sbjct: 933 QEFLGFYLSSHPLDRYKDILTTFSIKKLSEF-DLEGNQVIKTFGTITNLKKTITKKEEQM 991 Query: 1016 GWVTFS--EPAKEYEANFFP 1033 S + FP Sbjct: 992 AMFNLSCYDRT--ISCIAFP 1009 >gi|138896305|ref|YP_001126758.1| DNA polymerase III subunit alpha [Geobacillus thermodenitrificans NG80-2] gi|134267818|gb|ABO68013.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1095 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 367/1032 (35%), Positives = 571/1032 (55%), Gaps = 53/1032 (5%) Query: 4 YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + FVHL V S YSL + ++ ++ K A+A+TD L+ A+ F ++ Sbjct: 2 AMT----FVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQ 57 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G++PIIG D+ + +VLL + EGY+ LIE+ + + + + Sbjct: 58 RHGLRPIIGMMADVVLD-----------GDSGAFPLVLLAANEEGYRHLIEISTAVQMRE 106 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + + L+ + + G+I +T G +G ++ A++ LL +++LF RLY Sbjct: 107 EK----HVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLY 161 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + +QR ES +++LA +P+VATN ++ ED A L A+ ++ Sbjct: 162 IAIQRGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHI 221 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + YL EM F+DLPEALEN++ IA +C ++ LP+F + + Sbjct: 222 P---EEDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE-- 276 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 ++ LR GL R+ YR+RL+ EL++I M+FS YFLIVAD Sbjct: 277 --TADSYLRRLCEQGLARRVP-------SADARYRERLEHELHIIQTMRFSDYFLIVADV 327 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A++ I GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF Sbjct: 328 LAYARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFP 387 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR+EVIRYV YG + VAQIITFG+ AKAALR+ + L + + +R+ L+PN Sbjct: 388 DDRREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQ 447 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +S + + FR A A P +R L I++KLEGL RH S HAAG++I PL + V Sbjct: 448 GVTISQWH-RESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHV 506 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIP 602 P+ + P+TQ+ M +E GL+K DFLGL+TLTLL + + Q G D+ +P Sbjct: 507 PLQ-PSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALP 565 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 DD +TY LL+ T G+FQLESSGM++ L ++P +E+I+A+ +LYRPGP++ I Y Sbjct: 566 LDDEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYI 625 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 RK G+E I +HP ++P+L T GV+IYQEQ+MQIA ++G+SL +ADVLRRA+ KK K Sbjct: 626 RRKRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEK 685 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + +E F++G NG +A ++ + +FADYGFN+SHA +Y ++SY A++K H Sbjct: 686 ALLAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAH 745 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842 YP+ F A ++ + EK+ + +A + I ++PPSVN F V I LA + Sbjct: 746 YPLCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATV 805 Query: 843 KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 K VG + A+ I++ + PF DF R+ K L R LE+L+ AGA D G R L Sbjct: 806 KHVG-SAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSL 864 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L S++ ++ Q + ++ K + + R + E+ +LGF Sbjct: 865 LASIEIAIEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPAERRQREKELLGF 914 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 + HP V +P+ + + E G+ + + + ++ +T+ G + ++T S Sbjct: 915 AVTPHPAAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVS 970 Query: 1022 EPAKEYEANFFP 1033 + + E EA FP Sbjct: 971 DESGELEAVAFP 982 >gi|196249927|ref|ZP_03148622.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196210441|gb|EDY05205.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1093 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 367/1026 (35%), Positives = 570/1026 (55%), Gaps = 49/1026 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL V S YSL + ++ ++ K A+A+TD L+ A+ F ++ G++P Sbjct: 2 TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG D+ + +VLL + EGY+ LIE+ + + + ++ Sbjct: 62 IIGMMADVVLD-----------GDSGAFPLVLLAANEEGYRHLIEISTAVQMREEK---- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L+ + + G+I +T G +G ++ A++ LL +++LF RLY+ +QR Sbjct: 107 HVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQRG 165 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ES +++LA +P+VATN ++ ED A L A+ ++ Sbjct: 166 ERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIP---EE 222 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + YL EM F+DLPEALEN++ IA +C ++ LP+F + + ++ Sbjct: 223 DERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE----TADS 278 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR GL R+ YR+RL+ EL++I M+FS YFLIVAD + +A++ Sbjct: 279 YLRRLCEQGLARRVP-------SADARYRERLEHELHIIQTMRFSDYFLIVADVLAYARQ 331 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF DRR+E Sbjct: 332 RGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREE 391 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VIRYV YG + VAQIITFG+ AKAALR+ + L + + +R+ L+PN +S Sbjct: 392 VIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTISQ 451 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + + FR A A P +R L I++KLEGL RH S HAAG++I PL + VP+ Sbjct: 452 WH-RESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQ-PS 509 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608 + P+TQ+ M +E GL+K DFLGL+TLTLL + + Q G D+ +P DD +T Sbjct: 510 HGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLDDEKT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y LL+ T G+FQLESSGM++ L ++P +E+I+A+ +LYRPGP++ I Y RK G+ Sbjct: 570 YALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRRKRGE 629 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E I +HP ++P+L T GV+IYQEQ+MQIA ++G+SL +ADVLRRA+ KK K + + Sbjct: 630 EAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLAEH 689 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +E F++G NG +A ++ + +FADYGFN+SHA +Y ++SY A++K HYP+ F Sbjct: 690 REAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLCFY 749 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A ++ + EK+ + +A + I ++PPSVN F V I LA +K VG + Sbjct: 750 AVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKHVG-S 808 Query: 849 TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 A+ I++ + PF DF R+ K L R LE+L+ AGA D G R LL S++ Sbjct: 809 AAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIEI 868 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++ Q + ++ K + R + E+ +LGF + HP Sbjct: 869 AIEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPDERRQREKELLGFAVTPHP 918 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 V +P+ + + E G+ + + + ++ +T+ G + ++T S+ + E Sbjct: 919 AAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESGEL 974 Query: 1028 EANFFP 1033 EA FP Sbjct: 975 EAVAFP 980 >gi|149181134|ref|ZP_01859634.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1] gi|148851221|gb|EDL65371.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1] Length = 1081 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 376/995 (37%), Positives = 574/995 (57%), Gaps = 41/995 (4%) Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103 +AITD N ++ + F Q+ I+PIIG D+ + +VLL Sbjct: 1 MAITDRNVMYGVIPFYQECRKNNIKPIIGMTADVMSE-----------REERSFPLVLLA 49 Query: 104 STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163 GYQ L+++ S + I WL+ G EGLI +T G G I++ Sbjct: 50 KNNAGYQNLLKISSVIGTKSPEG----IPYKWLKGYG-EGLIGITPGGKGEIEQHLLAGD 104 Query: 164 SQVAEKRLLTFKKLFGD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 AE + +++FG+ +++LQ H DR E + +L + V TN+ F+ Sbjct: 105 INQAEDVVHRMQQVFGEESFFLSLQNHGLEDDRKIEDGIEKLKQKLSIRQVVTNDVQFVE 164 Query: 222 EEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280 +ED AH+ L+A+ + +Y K+R EM+ +F +ALENT+++A + Sbjct: 165 KEDAFAHECLLAIRDGVKLADDDREILPNDQYYFKSRDEMLDLFGSHVDALENTMKVANQ 224 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+ + + +LP++ + E + L + GL+ R + DY R Sbjct: 225 CNVEIAFNQNLLPKYPLPAGE----EADQYLHGVCMQGLKERGLENIP-------DYLDR 273 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L++EL VI +M FS YFLIV DF+++AK +I GPGRGS AGS+ AYAL ITD+DP++ Sbjct: 274 LEYELTVIQKMNFSDYFLIVWDFMKYAKDQHILTGPGRGSAAGSLVAYALRITDVDPIKH 333 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFLNP+R+SMPD DIDF RR+EVI YV KYG VAQIITFG+L AKAALRD Sbjct: 334 GLLFERFLNPERISMPDIDIDFPDYRREEVIEYVHKKYGDLHVAQIITFGTLAAKAALRD 393 Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520 R ++++L K IP+ P + + FR RL + + KLEG Sbjct: 394 TARVFGFNSKELEQLSKFIPSRPGS--LKSVYDESADFRNFINESQHKQRLFQTALKLEG 451 Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 L RHASTHAAG++I +RPL L+P+ + ++ +TQ+ M+ +E+ GL+K DFLGL+ LT Sbjct: 452 LPRHASTHAAGVIISERPLVDLIPIQ-AGQGNVHLTQYPMEILEEIGLLKMDFLGLRNLT 510 Query: 581 LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 +L + + + + G ++ L +P +D +T+ LL+ T G+FQLES GM+ L ++P+ Sbjct: 511 ILDRIVASIRKGTGKRLSLDDLPQNDEKTFDLLSQGRTDGVFQLESDGMKNVLVKLRPNS 570 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 EDI+A+ +L+RPGP++NI ++ +RK+G+E I HP + +L T GVI+YQEQ+MQIA Sbjct: 571 FEDIVAVNALFRPGPMENIPLFISRKHGEETIEYPHPDLKEILGVTYGVIVYQEQIMQIA 630 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 ++G+SL EAD+LRRA+ KK +E +D +++ FI GA G S A I++L+ +FA+Y Sbjct: 631 SKMAGFSLGEADLLRRAVSKKKREVLDSERKHFIDGALNKGYSFETAQEIYDLIVRFANY 690 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFN+SHA AY++I+YQ A++K +YP FLAA +T + N K+ ++ ++A+Q +I I+PP Sbjct: 691 GFNRSHAVAYSMIAYQLAYLKANYPSYFLAALLTSVIGNDTKVSQYIREAKQNDINILPP 750 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879 S+N FKV I YSL A++GVG + I + +KPF L DFC RV K +NR Sbjct: 751 SINLSQFPFKVEKGGIRYSLGAVRGVGAAALKEIYQERQEKPFVDLFDFCLRVSLKAVNR 810 Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKI 938 + LE+LVF+GALD FG R LL SLD ++++ V R + ++F E+ F K Sbjct: 811 KTLEALVFSGALDDFGVDRSTLLASLDVALEHSELV---RPQDQDYDLFQEEEAFFL-KP 866 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + + E E++VLG Y S HP+ ++ + + + + A NIR+ Sbjct: 867 KYTEVEDMPLEKKLEYEKQVLGLYLSDHPVSPFESLFKNVSAIDLFDLEAG--NKNIRVG 924 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + + +T+KG + ++T S+ + E E FP Sbjct: 925 VYLTAVKTIRTKKGEVMAFITMSDSSGEMEGVIFP 959 >gi|254368720|ref|ZP_04984733.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC022] gi|157121641|gb|EDO65811.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica FSC022] Length = 1159 Score = 656 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 386/1043 (37%), Positives = 583/1043 (55%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 WL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL+ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLKGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I + IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGMILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|187931355|ref|YP_001891339.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] gi|187712264|gb|ACD30561.1| DNA polymerase III subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] Length = 1159 Score = 656 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 387/1043 (37%), Positives = 584/1043 (55%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ ++ LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+I VGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDISVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQSRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025 >gi|308177849|ref|YP_003917255.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117] gi|307745312|emb|CBT76284.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117] Length = 1169 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 347/1052 (32%), Positives = 531/1052 (50%), Gaps = 48/1052 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+GA L + + A+AITD LF A +F ++A AG++PIIG + + Sbjct: 1 MLDGAARLGELFAEANRQDMKALAITDHGYLFGAFDFWRQATGAGVKPIIGVEAYVTPGT 60 Query: 82 NLKMTNQGKTPFPT------------VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 + K + LL +G L + SR L + Sbjct: 61 ARDDKTRVKWRTDESQKGDDVSGGGLYNHMTLLSYNNKGMDNLFKGSSRASLDSVFGKYP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 R L E EG+I TG SG + A+ + LFG + + + Sbjct: 121 RWDRELLNE-HHEGIIATTGCPSGEVQTKLRLGQYDAAKAAAAELQDLFGKENYFCEIMD 179 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +R +++LA ++PLVATN+ + E D +AH+ L+A+ + + + + Sbjct: 180 HGLEIERRITKDLLRLAKELDIPLVATNDLHYTHESDAKAHEALLAINSGSTLDEPTYDQ 239 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC---SFILQVHAPILPRFIEKECDDIQ 304 + ++ E + E + ++V ++ K Sbjct: 240 GGSRFAFSGTGYYLKSAREMRELFKELPEACDNTLAIADRVEVSFDTNANYMPKFPCPPG 299 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 ++E + L + GL R G + R++ D+EL+VI +M F GYFL+VADFI Sbjct: 300 EDETSWLIKEVDKGLHYRYPNG------IPEASRKQADYELDVIIKMGFPGYFLVVADFI 353 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 W+K + I VGPGRGSGAGS+ AYA+ ITD+DPL L+FERFLNP+R+SMPDFD+DF Sbjct: 354 NWSKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPERVSMPDFDVDFDD 413 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR EVIRYV KYG ERV+ I+T+GS++ K AL+D R L P+S + L K +P Sbjct: 414 RRRSEVIRYVTEKYGDERVSMIVTYGSIKTKQALKDSSRVLGYPFSMGESLTKALPPAVM 473 Query: 485 HPVSLQAIADDSR---------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 D+ FR DP R+ E ++ LEGL R HAAG+++ Sbjct: 474 AKDIPLNDIDNPESKRYSEAGDFRNLVANDPEAARVFETAKGLEGLKRQWGVHAAGVIMS 533 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594 P+ +VP+ R ++ +TQF+ E GLIK DFLGL+ LT++ +L+ + G Sbjct: 534 SDPIIDVVPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALENIEYNTGT 593 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 K+DL + +D E Y+LL TLG+FQL+ MR L+ M+PD EDI A+++LYRPGP Sbjct: 594 KIDLETLTIEDPEAYNLLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDISAVIALYRPGP 653 Query: 655 I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLS 708 + ++ Y RK G +++ IHP + L E T G+I+YQEQVM IAQ L+GYSL Sbjct: 654 MGANSHTNYALRKTGLQEVTPIHPELAEPLAEILGGTYGLIVYQEQVMAIAQKLAGYSLG 713 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 +AD+LRRAMGKK K E+DKQ F G + NG S ++++L F+DY FNK+H+AA Sbjct: 714 QADILRRAMGKKKKSELDKQFAGFKQGMNDNGYSDAAVQTLWDILLPFSDYAFNKAHSAA 773 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y V+SY TA++K HYP E++AA +T D+ +K+ + + R I ++PP VN ++F Sbjct: 774 YGVVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLALYLNECRHIGITVLPPDVNESALNF 833 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887 I + + AI+ VGT ++EA A+ ++ DF +V + N+R +ESL+ Sbjct: 834 TPVGKDIRFGMGAIRNVGTNAVSGMVEARAEKGNYNDFNDFLGKVPAVVCNKRTIESLIK 893 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFS 944 AGA D + R L+ + V++N ++F E + S + + Sbjct: 894 AGAFDSMKHPRRALVAIHEEAVDSVIQVKRNEAANQFDLFSALGAEDSSESMHVAIPDLP 953 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMV 1001 + + E+ +LG Y S HPL L + ++ G+ I +A M+ Sbjct: 954 DWDKKEKLAYERDMLGLYVSDHPLQGLGSALDQYADMPVTHVLSDDGPQDGHIISIAGMI 1013 Query: 1002 VSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 Q++ +K G+ + + E FF Sbjct: 1014 SGLQRRIAKKSGNPYARCEIEDLSGSMEVMFF 1045 >gi|328675636|gb|AEB28311.1| DNA polymerase III alpha subunit [Francisella cf. novicida 3523] Length = 1159 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 388/1043 (37%), Positives = 593/1043 (56%), Gaps = 45/1043 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ +S+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGFSVVDSTVRLTDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ ++ LVS+ Y D+ I Sbjct: 64 VELKVDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV-NLQRHR 190 +WL++I +I L GG G + +A + A++ + ++FG Y+ + + Sbjct: 111 PKNWLKDINLANVICLNGGQQGELGKAILAKDYRKADEIINQNVEIFGANNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ + ++ P LP E+ Sbjct: 231 TKEQYLKSAEEMYETFSALPVLVDNTLAIAKRCNVMFELGKPCLPTVDIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M FSGYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILANRSADKHEHIIKVYKDRLQREIDIICDMGFSGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLTYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFNKILKEGEP-LYDEMQADEEVAEVIERAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PIYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+G+++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHGRKQIAYLHPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM++Q++ F GA+K + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEQQRKIFKEGAAKYHNIDAKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + I ++ P+VN D + I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAISKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ A+ F S+ D RVD +K+N++ LE+L FAGA+ Sbjct: 826 GLGAIKGLGGEAVKSILTERDAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISR 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953 +R S++ K A +V + +++F + LEK N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDTELEKECIVEEWNLKELLI 945 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008 NE++ LG YFSGH +D + R + + + GN++R+ A M+ ++K Sbjct: 946 NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLNKIQQPNMDGNSVRIIASMITPAIRRK 1002 Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031 T+ G + + + + Sbjct: 1003 TKTGKVLYIINIDDEFDRADCLI 1025 >gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666] gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666] Length = 1190 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 412/1056 (39%), Positives = 605/1056 (57%), Gaps = 42/1056 (3%) Query: 2 TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61 + +++ FVHL++H+ +S+++G ++ I+ AADQQPA+AITD +NLF ++F ++ Sbjct: 12 SPKMKRM--FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKE 69 Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 AG++P+IG + + + + V GY L EL++R + Sbjct: 70 GRGAGVKPLIGADVWVQVPGKDAAAPAARLLLL--------VQNHRGYLNLSELLTRAWT 121 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + + I L WL+E+ EGLI L+G G + +A A + L LF R Sbjct: 122 RNVVRDQAVIKLEWLEEL-NEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHR 180 Query: 182 LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ LQR R D + VQLA +LP+VAT+ FL+ +DYEAH+ + +A ++ Sbjct: 181 FYLELQRAQRPDDERHVAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEIL 240 Query: 241 SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R R T + Y K+ ++M +F+D+P AL NT+EIARRC+ L++ P+LP + E Sbjct: 241 GNTRRVRKFTREQYFKSAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPE 300 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGY 356 + ++ + R+ + GLE RLA + Q Y +RL+FE+N I +M F GY Sbjct: 301 VEGVRMPIDAYFRHASFEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGY 360 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FLIV DFI WAK N PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMP Sbjct: 361 FLIVGDFINWAKNNGCPVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMP 420 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 DFDIDFCQ RD VI YV++KYGH+ V+QI+TFG++ A+AA+RDVGR L PY D + Sbjct: 421 DFDIDFCQSNRDRVIDYVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGIS 480 Query: 477 KLIPNDPAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522 KLIPN P V+ + A+ + E + V LL++++KLEGL Sbjct: 481 KLIPNKPGQAVTLQLLPAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLT 540 Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 R+ HA G++I L+ P+Y S V+QF+ +E GL+KFDFLGL TLT+L Sbjct: 541 RNVGMHAGGVLIAPGKLTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTIL 600 Query: 583 QKSLDFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 + + +F+ QR + +D Y L T +FQ ES GM++ L+ +P+ Sbjct: 601 EIAREFIIQRHPSQKDFKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNR 660 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 +ED+IA+ +LYRPGP+D I Y RK GKE P + P+L+ET G+++YQEQVMQ A Sbjct: 661 LEDLIAMNALYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTA 720 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q+L GYSL AD+LRRAMGKK ++EM Q++ F GA NG+++ A +F+L+ KFA Y Sbjct: 721 QILGGYSLGGADMLRRAMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGY 780 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+++Y TAW+K HY EF AA+MT+EMD+ +K+K DA++ IQ P Sbjct: 781 GFNKSHSAAYALLAYHTAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQKMGIQFESP 840 Query: 820 SVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKL 877 +N F+ + + Y L A+KG G I+ A + PF SL DFC RVD KL Sbjct: 841 DINRGDYRFEPISATAVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKL 900 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFS 935 N+R +E+L+ GA D +R +LL S+D ++A E N +F + Sbjct: 901 NKRTVEALIKGGAFDNLHLNRAELLASVDRAFEFAAATEAN--ANQGGLFDMSDSHAAST 958 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995 + L + R E+ +GFY SGH D + +R+ + E+ + + Sbjct: 959 QEPPLVEAVPFGVKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLIDSREPQ-- 1016 Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 LAA++ + +G I + + EA+ Sbjct: 1017 LLAAILSDLRVINGNRGKLIIF-KLDDKTDVLEASV 1051 >gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B] gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B] Length = 1153 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 398/1036 (38%), Positives = 585/1036 (56%), Gaps = 29/1036 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + SP FVHL+ HS YS+ +G + ++ ++ + A+ I+D N+F L F A A Sbjct: 19 MP-SPRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALA 77 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++PI+GC L + +L + +L EGY L L+++ +L + Sbjct: 78 AGLKPILGCDLKVINPKDLNKP----------FRLGVLCMNHEGYHSLSVLLTKAFLTNN 127 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + W + G+EGLI L+G + G + +A + FK F R YV Sbjct: 128 DAARGLVDPKWFDDGGSEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYV 187 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R D +++ A +LP+VAT+ FL ED+EAH+V ++A + Sbjct: 188 ELQRAGRPTDELATARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDP 247 Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R R TP+ YLK+ +EM +F+D+P A+ENTVEIA+RC+ + P LP F + Sbjct: 248 RRVKRYTPEQYLKSEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMS 307 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + L + + L Y +RL++EL +I MKF GYFLIV D Sbjct: 308 LDDYIDQ-LSKEGLQKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMKFPGYFLIVQD 366 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI W+K + +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DF Sbjct: 367 FINWSKTHGVPVGPGRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPERVSMPDFDVDF 426 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ RD I YV+ YG + V+QI TFG+L AKA +RDVGRAL +PY + D L KLIP Sbjct: 427 CQYNRDRTIDYVKRTYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKTDALAKLIPMQ 486 Query: 483 PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P +S AIA+ F+EA D ++ +++ LEGL R+ HA G++I L+ Sbjct: 487 PGRNISLDDAIAEVPEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGGVLIAPGKLTD 546 Query: 542 LVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDL 598 P+Y D R + ++QF+ K +E GL+KFDFLGL TL++L K+++ + + +L Sbjct: 547 FCPLYNSDGRPENTISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIIDKLYPEQHFEL 606 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY L T +FQ ES GMR L+ +PD +ED++AL +LYRPGP+D I Sbjct: 607 ERIPVDDAATYELFQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNALYRPGPMDLI 666 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 Y +RK G+EK+ + ++P+LKET G+++YQEQVM++AQ++ GYSL AD+LRRAMG Sbjct: 667 PSYIDRKFGREKVEYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLGGADLLRRAMG 726 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EEM +Q+ FI GA + G+ +++A IF+L+ KFA YGFNKSHAAAY+ ++YQTA+ Sbjct: 727 KKNVEEMKRQRAVFIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAAYSYVAYQTAY 786 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837 +K H+ F AA++ + MD+ +K+K DAR + P VN F V +N I Sbjct: 787 LKVHHTAAFFAANLCMVMDDGDKMKALIDDARANGVDFRLPDVNVSEWFFSVPTENVIQL 846 Query: 838 SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+ I+ E A+ PF+ + DF +RV+ +N R+ ES+V AGA D Sbjct: 847 GLGAIKGINRALVEAIVSEREANGPFEDIFDFAARVE--GVNFRIFESMVRAGAFDSTDA 904 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R +L ++ N + V ++ +++F E+ + + + E E Sbjct: 905 DRGKLFSNISNALQGGAAVR--QSAGQDSLFGGEETKKI--VNWVEGEQWSFRRNLEEEM 960 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 GF SGH D YK LR +G +E + + + ++ S +Q ++G +G Sbjct: 961 TAFGFSLSGHFFDEYKDDLRAIGCMPLDELQVSKEN--VCVGGVISSIRQINGKRG-VMG 1017 Query: 1017 WVTFSEPAKEYEANFF 1032 V + E F Sbjct: 1018 VVGIDDGTHSIEFFAF 1033 >gi|42520619|ref|NP_966534.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410358|gb|AAS14468.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 1109 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 465/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEF++ A + GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 IGC + + + I+LL +GY L+ LVS + + Sbjct: 62 IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + + GLI LTG G + + + EK L F LYV LQRH Sbjct: 109 YVDFDELLNL-STGLIALTG---GSLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 160 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 161 GLNKELELEEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 220 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 221 TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 276 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 277 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 334 ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 394 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS +LEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 452 LSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + G K+D+S +P +D + Sbjct: 512 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L++ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 572 TYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK Sbjct: 632 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E FI GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 692 QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P +N +F + D RI Y +AA++ VG Sbjct: 752 FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINNSQAEFSIEDERIRYGIAALRNVGF 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I+ + + +F +N+R LESL+ +GA D +R QL +S+D Sbjct: 812 SIVEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A ++++ + +F K LE + + E+E LGFY + HP Sbjct: 870 LIYFANKNKQDKESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 926 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I E + A ++++ + + + +G R +T S+P Sbjct: 927 LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 979 Query: 1028 EANFF 1032 E F+ Sbjct: 980 EIAFY 984 >gi|194336619|ref|YP_002018413.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194309096|gb|ACF43796.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 1189 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 374/1072 (34%), Positives = 573/1072 (53%), Gaps = 62/1072 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL H+ YS+ + + I ++A+TD +F+ E +A +AGI+ Sbjct: 2 DFIHLHAHTHYSMQSSPIFPDEIFSAAVKFGMKSVAVTDYCAMFNMPELFSEAKSAGIKL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + L+ + P PS+VLLV GY+ L L+SR Sbjct: 62 IIGSELLL-----LETDAHQHSRIPVSPSLVLLVQNDAGYRNLCILLSRAAREGFVNGMP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L+ EGLI L+ S+G I RA ++ AE +K++FGDR Y+ LQRH Sbjct: 117 HIESRLLESCH-EGLIALSAYSAGRIGRALLAGATDEAETFAAYYKQIFGDRFYLELQRH 175 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 +D Q + LA + LVATNN +L +D + + ++A + +Q + Sbjct: 176 NTPFDDKLNEQTIALAEKLGIELVATNNVHYLERKDADCYRAMVANRTKEKLSNQNLQAL 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 DHYLK+ EM ++FSD L NT IA +CS+ PILP F E + E Sbjct: 236 AGSDHYLKSSGEMSALFSDAHRELSNTALIAGKCSYSFSDKEPILPHFPLPEGF---ESE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR+ + G + + A A A G A+D R R++ EL VI +M FS YFLIV+D I + Sbjct: 293 FAYLRHLTLEGAKEKYA-DADADGISAEDVRARIELELGVIEKMGFSSYFLIVSDLIAAS 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R SMPD DIDF + Sbjct: 352 RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA++I G+ AKAA+RD GR L++P VD+L KL+P P + Sbjct: 412 QKVLEYTVEKYGTESVAKVIAIGTFAAKAAIRDAGRVLEVPLPLVDKLAKLVPVKPGITL 471 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+++ ++ + P + L+ ++ LEG R+ S HA +VI D L + VP+Y Sbjct: 472 E-KALSEAKEMQQFAESTPELRELIRYARALEGRARNVSMHAGAVVITDGRLEEQVPLYV 530 Query: 548 -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIE +GL+K D+LGL+T Sbjct: 531 SNKIETEVRKFADEIDLDEPDHVRGKASDGSEEKQVVTQFDKNWIETSGLLKIDYLGLET 590 Query: 579 LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R ++L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 LAVIDETLKMIKRRHNLDIELEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ + K+G+E I +HP+++ +LKET GVI Sbjct: 651 TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLETILKETYGVI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+SL++AD LR+AMGKK E M+K K F+ GA K G+ T+A + Sbjct: 711 VYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMEKYKADFVQGAIKQGVHDTLATRV 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ ++E++K +A Sbjct: 771 FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDIERMKHLTDEA 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFD 863 + F I +PPS+N F V D I L+AIK VG AR ++ + F Sbjct: 831 KSFGISTLPPSINKSDALFAVEDAGGRSFIRVGLSAIKQVG-AAARAVVTSRLRRKRDFV 889 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 +L D + VD + +NR+ LE L+ +GA D R +LL ++D K+ Q ++ T Sbjct: 890 NLFDLAASVDLRVMNRKALECLILSGAFDEIDQHRARLLANVDKAFKFGQMQNRSVTLGQ 949 Query: 924 ENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F E+G ++ + + +E++++GFY S HPL Y+ + Sbjct: 950 CGFFTAEEGAELEEAHYPDMDAAEMMPEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAFAT 1009 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ + ++ ++VS + + RKG ++ + + + + F Sbjct: 1010 LQL-DAKEVVAAKQYKVLGLIVSVKPYQDRKGKQMLFGIIEDFTGKADFTVF 1060 >gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301] Length = 1269 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 356/1148 (31%), Positives = 563/1148 (49%), Gaps = 129/1148 (11%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-------K 61 P FVHL VH+ YS+L+G S+ ++DK AD QP IA+TD ++F EF K Sbjct: 2 PQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKGK 61 Query: 62 AC-----------------------AAGI----------------QPIIGCQLDIDMQDN 82 AA I +PIIGC++ + Sbjct: 62 CKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVA---R 118 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142 ++ ++ P + ++LL +GY LI++VS+ + + R + +++ E Sbjct: 119 RRLHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWT-EGFYMRPRTDRTEIEKYH-E 176 Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------G 191 GLI + +G + RA N + AE+ + KK+FGD Y+ LQ H+ Sbjct: 177 GLICCSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYP 236 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + + +LA H + +V TN+ F+ E++ EAHD L+ ++ + R + Sbjct: 237 MQLHVNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQ 296 Query: 252 HYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---- 306 +LK +EM +IF A+ TV+I + HAPI+P F E + E Sbjct: 297 EWLKTTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRAR 356 Query: 307 ---------------------EENELRNKAVAGLEVRLAQGAIAKGYH------------ 333 EE L+ G +L + Y Sbjct: 357 LTEKDLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRY 416 Query: 334 ----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAY 388 ++ +RL FEL+++ M F GYFLIV DFI+ A++ ++ VGPGRGS AGS AY Sbjct: 417 GEQLTEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAY 476 Query: 389 ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448 L IT IDP+ + LLFERFLNPDR+S+PD D+DF D R V+ +V KYG E+VA IIT Sbjct: 477 CLGITQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEKVAHIIT 536 Query: 449 FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-AD 505 +G++ K A++DV R ++ S+ DRLCKL+P+ AI + A + Sbjct: 537 YGTMATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKAAEQSDN 596 Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMK 561 P + + ++ LEG R+ HA G +I ++ VP+ + + VTQ+ Sbjct: 597 PILRDTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGS 656 Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLLTTKGTLG 619 IE GLIK DFLGLKTL++++ +++ + +D TY L T+G Sbjct: 657 VIEDTGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYGEGRTVG 716 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 FQ ES+GM++ L +QP ED+IA+ +LYRPGP+D I + RK+G+ I P+++ Sbjct: 717 TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEYDIPVME 776 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 LK+T G+ +YQEQVM +++LL+ ++ E+D LR+AMGKK+K+++D K +FI G KN Sbjct: 777 KYLKDTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFIEGGRKN 836 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G + I+ KFA Y FNKSHA Y+ ++YQTA++K +YP E++AA ++ + N+ Sbjct: 837 GHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLSRNLTNI 896 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858 E++ + + ++ I +M P +N F + + LAA+KGVG I+ Sbjct: 897 EQLTLYMNECKRMGISVMGPDINESMRTFSSNAAGDVRFGLAAVKGVGAAAVESIIAERK 956 Query: 859 -DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----------LD 906 + PF + DF RV+ +NR+ LE+L +AGA D ++R + ++ Sbjct: 957 ANGPFKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSSGITFIE 1016 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + +Y Q + + N +++F + + L + + + E+ ++G Y S H Sbjct: 1017 QLMRYGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVGLYLSAH 1076 Query: 967 PLDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 PLD YK I+ M E ++G I +A MVV Q T+ G G + Sbjct: 1077 PLDDYKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWGKFKLEDYN 1136 Query: 1025 KEYEANFF 1032 +E F Sbjct: 1137 GGHEFALF 1144 >gi|213019585|ref|ZP_03335391.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995007|gb|EEB55649.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 1118 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 464/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+A+TD+ NLF +LEF++ A GIQ I Sbjct: 14 FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 73 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 +GC + + SI+LL +GY L+ LVS + + Sbjct: 74 VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L T GLI LTG G + + + ++ + F LYV LQRH Sbjct: 121 YVDFDELLSFNT-GLIALTG---GCLAQLLL----EQDKETVEKLLSAFDGHLYVELQRH 172 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 173 GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 232 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 233 TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 288 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 289 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 345 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 346 ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 406 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 463 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 464 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 523 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K D+S + D Sbjct: 524 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 583 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 584 TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 643 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK Sbjct: 644 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 703 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF Sbjct: 704 QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 763 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P ++ +F +G I Y +AA++ VG Sbjct: 764 FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 823 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 A I+ A + + + +F + +N+R LESL+ +G D +R QL +S+D Sbjct: 824 AIAEGIVNARSS-SYKDIWEFIQNLGH-IINKRALESLIKSGTFDSVHKNRKQLYESIDT 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A KNR + +F H K LE N + E+E LGFY + HP Sbjct: 882 LIYFA---NKNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 935 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L+K+ I ES I+ A ++++ + + + +G R +T S+P Sbjct: 936 LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 988 Query: 1028 EANFF 1032 E F+ Sbjct: 989 EIAFY 993 >gi|190571064|ref|YP_001975422.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357336|emb|CAQ54766.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 1106 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 464/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+A+TD+ NLF +LEF++ A GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 +GC + + SI+LL +GY L+ LVS + + Sbjct: 62 VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L T GLI LTG G + + + ++ + F LYV LQRH Sbjct: 109 YVDFDELLSFNT-GLIALTG---GCLAQLLL----EQDKETVEKLLSAFDGHLYVELQRH 160 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 161 GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 220 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 221 TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 276 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 ELR +AVAGLE R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 277 EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 334 ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+ Sbjct: 394 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 452 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + + K D+S + D Sbjct: 512 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 572 TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK Sbjct: 632 LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q+E F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF Sbjct: 692 QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P ++ +F +G I Y +AA++ VG Sbjct: 752 FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 811 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 A I+ A + + + +F + +N+R LESL+ +G D +R QL +S+D Sbjct: 812 AIAEGIVNARSS-SYKDIWEFIQNLGH-IINKRALESLIKSGTFDSVHKNRKQLYESIDT 869 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A KNR + +F H K LE N + E+E LGFY + HP Sbjct: 870 LIYFA---NKNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 923 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L+K+ I ES I+ A ++++ + + + +G R +T S+P Sbjct: 924 LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 976 Query: 1028 EANFF 1032 E F+ Sbjct: 977 EIAFY 981 >gi|210635289|ref|ZP_03298485.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279] gi|210158450|gb|EEA89421.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279] Length = 1267 Score = 653 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 339/1139 (29%), Positives = 537/1139 (47%), Gaps = 124/1139 (10%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL H+ YS+L+GA + +++ + QPA+AITD ++ E A Sbjct: 2 AFVHLHNHTVYSMLDGATRIKDMVQRAVDLGQPAVAITDHGYMYGVPELGLACDAVN--- 58 Query: 70 IIGCQLD---------IDMQDNLKMTNQGKTPFPTVPS---------------------I 99 G ++ ++ K P + Sbjct: 59 -HGTPEYKVWSHDKSFLEKGRRDELECPDKDADPRGYEQHMKDLAMWDAQGNIDELKPPL 117 Query: 100 VL---------------LVSTA--------------EGYQRLIELVSRMYLLDQGKQSVR 130 V+ L +GY L++ VS + R Sbjct: 118 VIKPIFGCEVYFTPDDTLARDRKPELYHMVLFAQNEKGYVNLMQTVSEA-AVQGFYYKPR 176 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189 + L L+ EGLI + +G I + A + TF+ F Y+ +Q H Sbjct: 177 VTLDNLRR-HREGLIASSACIAGIIPKCIDRGEMDKAIEWAETFRDTFEPGNFYIEIQEH 235 Query: 190 ------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 D ++++A + ++ATN+ +L+ +D DV+M + + + Sbjct: 236 GITTDSGITDEELSKTLIEIARQVGVKVIATNDFHYLTRDDAPVQDVIMCIGTGSKIDDP 295 Query: 244 DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +R R+ + Y+K EM ++F PEA +NT+EIA +C+ L + ILP + D Sbjct: 296 NRIRMEGSEFYMKTEDEMRALFPYCPEACDNTLEIAEKCNVELDWDSIILPNYPL---LD 352 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + E++ R + GL R K D R+R +FE VI F+ YFLIVA+ Sbjct: 353 PGETHESQFRRECEEGLAKRYGADWDGKEIGGVDIRERFEFEYKVICDKGFAAYFLIVAE 412 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R MPD D+DF Sbjct: 413 YVRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDF 472 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR EV+ +V+ YG E+V +IT+ +++AK A+ D R L P RL K++P D Sbjct: 473 DDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVPGD 532 Query: 483 PAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 P + + + EA D R+++ + +EGL R HA ++I Sbjct: 533 PGVKLKQVLEKIPGKEDMYNPDLVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 592 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594 +++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + + + Sbjct: 593 RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGI 652 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +D+ IPFDD + + L+++ T G+FQ+ES+GM ++ M+P + ++AL++LYRPGP Sbjct: 653 DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 712 Query: 655 IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD- 711 + +V Y NR NGKE VS P +D +L ET G ++YQEQVM I+ + G+S E+D Sbjct: 713 LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 772 Query: 712 ------------VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 +L + K E + + +++GA KNG + +A I++ + +FA Y Sbjct: 773 RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKREVAQKIWDDVLEFASY 832 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R I ++PP Sbjct: 833 AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 892 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878 +N +F + + LA I+GVG I+ PF +L DF RVD+ + N Sbjct: 893 DINESGTEFTATAEGVRFGLAGIRGVGEGVTEAIIAEREKGGPFKNLHDFVERVDASQAN 952 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF----AH 929 RRV+E+L+ GA D GY R QL+ +D NI A +K+R ++F Sbjct: 953 RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1012 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986 E F + + ++ E+ VLG Y S HPL Y+ L K + Sbjct: 1013 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1072 Query: 987 ------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G A MV S ++ T+ G + VT + E FP Sbjct: 1073 FETMGPAGNAVNQEIPEGKPYWWAGMVSSVSKRVTKNGDPMAIVTLEDMEGEATVVIFP 1131 >gi|315124217|ref|YP_004066221.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017939|gb|ADT66032.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 961 Score = 653 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 366/967 (37%), Positives = 556/967 (57%), Gaps = 46/967 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL +H+ YSLL+GA L + + ++A+TD N+F ++F Q A G++PI Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + D L + L GYQ L+ L S+ Y+ R Sbjct: 64 IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180 I L++ +EGLI + G ++ + A++ L +KK+F D Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176 Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 Y + RH D+ + +++L+ + ++ATN++ + +E AH+V M +A Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293 ++ DR R + + Y+K+ +M +F+D+PEA+ENT EIA++C+ L + Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296 Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 R K+ + I EE E GLE RL ++Y+QRL+ E Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 +N+I MKFSGY LIV DFI+ AK IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK +RDV R Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524 M D L KL+P + + + + +E P + E ++ LEGL R+ Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532 Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 A HAAG+VI + L + P++R ++D VTQ++ +E LIKFDFLGLKTLT++ Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592 Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++ + +R K + I +D + Y + + TLGIFQ+ES GM+ ++P+ E Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652 Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699 DIIA+++LYRPGP+++ + + +RK+G + I ++ +L+ T GVI+YQEQVMQI Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712 Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759 Q++ G+SL ADV+RRAMGKK E+M K K F GA K G + A +++EL+ KFA Y Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772 Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI + + ++ NI+++PP Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832 Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 S+N +F G + I Y L AIK VG +++EA D F + DF ++D Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892 Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 K+NRR LESL+ AGA D FG++R L +++N+ + ++ + + R N ++F E+ T Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952 Query: 936 DKITLEK 942 ++ Sbjct: 953 VQVNFTP 959 >gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327] gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327] Length = 1190 Score = 653 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 355/1069 (33%), Positives = 560/1069 (52%), Gaps = 65/1069 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL H+ YS+ + + +A+TD +F+ E +A A ++ I Sbjct: 11 FVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQAAKAEVKLI 70 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ + D ++LL+ GY+ + ++SR Sbjct: 71 MGSEIYLAGTDAHDTGRPAT--------LILLIRNDIGYRNMCVILSRAARDGFSNGLPH 122 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + S L+E +EGL L+ SG I R + A K ++ LFG+ Y+ LQ+H Sbjct: 123 VDRSVLKEC-SEGLTCLSAAHSGQIGRTLLAGNEAEAAKLAEQYRSLFGEHFYLELQKHG 181 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248 Y+ ++LA +PLVATNN +L D + ++A + SQ + Sbjct: 182 VPYEELLVPATIRLAEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLNSQNLQCLP 241 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 ++Y K+ SEM ++F + + L NTV+IA CS+ P LP+F E D E+ Sbjct: 242 GHENYFKSASEMSALFDNSHDELSNTVKIAEACSYKFVDQDPHLPKFPLPEGFD---SEK 298 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR+ G + + G ++ ++R++ EL VI +M +S YFLIV+D I ++ Sbjct: 299 GYLRHLTWEGARNKY---GVEDGAIPEEVKERIELELGVIEKMGYSAYFLIVSDLIAASR 355 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 356 EMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGKQ 415 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ Y KYG E VA+++ G+L AKAA+RD GR L +P VD+L KL+P+ P + Sbjct: 416 KVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSLK 475 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR- 547 A + + +DP +L++ ++ +EG R+ S HA +VI D L + VP+Y Sbjct: 476 -DAFKEVKELKRLVDSDPQYQQLMQYARAMEGRARNVSMHAGAVVITDGALEEQVPLYVS 534 Query: 548 -------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582 VTQF+ IE+AGL+K D+LGL+TL ++ Sbjct: 535 NKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAVI 594 Query: 583 QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641 ++L + +R + ++L +P DD +T+ + GIFQ ESSGM+ + +QP I Sbjct: 595 DETLRLIKKRHGIDIELEKVPMDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTIG 654 Query: 642 DIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 DIIA+ +LYRPG + + + ++ +RK+G+E+I +HP+++ +LKET GVI+YQE Sbjct: 655 DIIAMSALYRPGALNAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQE 714 Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753 QVMQI+Q++ +SL +AD LR+AMGKK M K KE F+ GA +++ +A IF+L+ Sbjct: 715 QVMQISQVMGRFSLGKADNLRKAMGKKNPALMQKFKEEFVQGAVSIDVNEALATRIFDLM 774 Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +A+ F Sbjct: 775 AEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGFG 834 Query: 814 IQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA---SADKPFDSLE 866 I +PPS+N F V +++ I L+AIK VG AR ++ A KPF +L Sbjct: 835 IFTLPPSINQSDALFSVDEHKGKPCIRVGLSAIKQVGNG-ARAVVAARLRRDGKPFANLF 893 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D + VD + +NR+ LE L+ AGALD +R +LL ++D K+ Q K T Sbjct: 894 DLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQNKAVTLGQGGF 953 Query: 927 FAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 F + I + S + ++E+R++GFY S HPLD Y+ Sbjct: 954 FNDDFSNEQAGIYYPELDNGEPMPESEKLQHEKRLVGFYLSHHPLDRYRRDWEAFANLTL 1013 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + ++VS + + RKG ++ + + + + F Sbjct: 1014 -DMREVTPSKLYKTIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061 >gi|189346342|ref|YP_001942871.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245] gi|189340489|gb|ACD89892.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245] Length = 1189 Score = 653 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 369/1071 (34%), Positives = 564/1071 (52%), Gaps = 62/1071 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL VH+ YS+ + + ++A+TD ++F+ E A A ++ I Sbjct: 3 FVHLHVHTHYSMQSSPVFPGELFSACRQLGMKSVAVTDYCSIFNMPELFSDAKKADVKLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L + L+ + PSI+LLV + GY+ L L+SR + Sbjct: 63 IGTELFL-----LESATHSQAKNTFSPSIILLVQSEAGYRNLCVLLSRASREGFINGTPH 117 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 + L++ +GLI L+ SSG I RA S AE +K +FGD Y+ LQRH Sbjct: 118 LESRLLED-HHDGLICLSAYSSGRIGRALLAGSLHEAETVTGYYKDIFGDNFYLELQRHA 176 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248 +D + + LA + LVATNN +L +D + ++A + SQ + Sbjct: 177 TSFDDKLNAATIALAEKFSVELVATNNVHYLDRKDSGCYRAMIANRTKEKLSSQNLQALP 236 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +HYLK EM IF D AL N+ IA +C+++ + PILP + + D +E Sbjct: 237 GSEHYLKTAEEMARIFPDNGSALANSARIAEKCTYVFKKKEPILPHYRLPDGFD---DEA 293 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR+ G + A G+ A G +D R R++ EL VI +M FS YFLIV+D I ++ Sbjct: 294 KYLRHLTWEGAAEKYA-GSEADGITEEDVRARIELELGVIEKMGFSSYFLIVSDLISASR 352 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 353 RMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 412 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 +V+ Y KYG + VA+++ G+L AKAA+RD GR L++P VDRL KL+P P + Sbjct: 413 KVLEYTVEKYGDQSVAKVVAIGTLGAKAAIRDAGRVLEVPLPIVDRLAKLVPTKPGITLE 472 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 I++ ++ + P +LLE ++ LEG R+ S HA +VI D PL + VP+Y Sbjct: 473 KA-ISEVRDLKQFVESSPENLKLLEYARALEGRARNVSMHAGAVVITDGPLEEQVPLYVS 531 Query: 549 V-----------------------------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579 VTQF+ WIE AGL+K D+LGL+TL Sbjct: 532 NKIETEVRKYADEIDLDETVQIGVKGADGVDEKQIVTQFDKNWIETAGLLKIDYLGLETL 591 Query: 580 TLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638 ++ ++L + +R DL +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 592 AVIDETLHLIRRRHNIDIDLEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQPT 651 Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVII 690 I DIIA+ +LYRPG ++ + N K+G+E I +HP+++ +LKET GVI+ Sbjct: 652 QIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKHGRESIDYMHPMLEEILKETYGVIV 711 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVMQI+Q++ G+S+++AD LR+AMGKK+ E M++ K F+SG G+ T+A +F Sbjct: 712 YQEQVMQISQVMGGFSMAKADNLRKAMGKKMPEIMEQFKADFVSGGVAQGVHDTLATRVF 771 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 EL+A+FA YGFNKSH+AAY V++Y T ++K HY EF+ A + E+ + +++K +A+ Sbjct: 772 ELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTAEFMTAILNSEIGDTDRMKHLTDEAK 831 Query: 811 QFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFDS 864 F I +PPS+N F + D++ I L+AIK VG AR ++ + F + Sbjct: 832 SFGIMTLPPSINKSDTLFAIEDDKGKPCIRVGLSAIKQVG-GAARAVVTSRLRKKRDFLN 890 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 L D + VD + +NR+ LE L+ AG+ D +R +LL ++D K+ Q ++ T Sbjct: 891 LFDLTASVDLRVMNRKALECLILAGSFDELDSNRAKLLANVDKAIKFGQMQNRSVTLGQC 950 Query: 925 NIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 F E G + + S + E++++GFY S HPL Y Sbjct: 951 GFFTSEAGGTGEDVHYPDLDPADPMPESEKLLQEKKLVGFYLSRHPLSPYHRDWEAFATL 1010 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + ++ ++VS + + RKG + + + + + F Sbjct: 1011 QLN-AKEVTPARQYKVIGLIVSIKPHQDRKGKAMLFGALEDFTGKADFTVF 1060 >gi|148244870|ref|YP_001219564.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326697|dbj|BAF61840.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 1141 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 377/1039 (36%), Positives = 598/1039 (57%), Gaps = 39/1039 (3%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P FVHL S +S+ + ++ ++K+ +IA+TD +NLF+A++F QKA AA I Sbjct: 3 NPGFVHLHCQSEFSVENSVVRISKFIEKVQEIGMDSIALTDESNLFAAVKFYQKATAANI 62 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 +PI G +++I ++ + S +LL +GY L EL+S Y + + Sbjct: 63 KPIFGARINIKDKEG------------ELYSGLLLCQDHQGYLNLSELISLSYTQGRSCE 110 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 V I L + +GLIM+ + + N A+++ ++ +F DR Y+ +Q Sbjct: 111 RVSITQQELIDY-NQGLIMIATPIYSDVAKYLISNKIVKAKQKSEFWQAIFVDRYYLGVQ 169 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R +D ++LA + +VATN+ FL+E D++AH+ + ++ +++ R Sbjct: 170 RTSRKFDEKHLHLCIKLALELGIAVVATNDVQFLNESDFDAHEARICISQGSLLDDTQRK 229 Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R + +LK+ +M +FSDLPE LENT+E+A+RC+ ++ Sbjct: 230 RHFSNQQFLKSPKQMYKLFSDLPEILENTLELAKRCNVHFELFKKNYLP---DFPIPEHL 286 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 E ++ GL RL + Y+QRL FEL++I +M FSGYFLIVADFI+ Sbjct: 287 TIEQFFSEESEGGLVQRLKNLKVDVN----IYQQRLKFELDIIIQMGFSGYFLIVADFIK 342 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 W+K+N+IPVGPGRGSGAGS+ AY L IT++DP++ LLFERFLNP+R+SMPD DIDFC D Sbjct: 343 WSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIKHELLFERFLNPERVSMPDLDIDFCTD 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RRDEVI YV +YGHE+V+QIIT+G++ AK +RDVGR L PY D++ K+IPND Sbjct: 403 RRDEVIGYVAKRYGHEKVSQIITYGTMAAKGVVRDVGRVLGHPYGFSDQISKMIPNDLRA 462 Query: 486 PVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + R ++ SV L+++S++LEGL R+ THA G+VI +S Sbjct: 463 TLEKALSEPEKGGSKELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKISD 522 Query: 542 LVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVD 597 P+Y+ + V+QF+ +E GL+KFDFLGL LT++ K++ ++ ++ Sbjct: 523 FCPVYKGYGENNSVVSQFDKDDVEAVGLVKFDFLGLSNLTVIHKAIKLISVKGLSDEPIN 582 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L +P DD Y LL + T G+FQLES GMR L+ +Q D EDI+A+++LYRPGP+D Sbjct: 583 LDALPLDDKRVYKLLQSCDTTGVFQLESKGMRSYLKKLQADNFEDIVAMLALYRPGPLDA 642 Query: 658 IVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 +V + ++ HP+++ +LK T GV +YQEQVM+ AQ+++GYSL AD+LRRA Sbjct: 643 GMVDDYINVKHGAQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLLRRA 702 Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 MGKK EM++Q+ F+ GA++ GI++ A IF+L+ KF+ YGFNKSH+ AYA +SY T Sbjct: 703 MGKKKASEMNRQRSVFVKGAAERGINEKKANEIFDLIDKFSGYGFNKSHSVAYAYVSYHT 762 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835 AW+K+HYP F+AA ++ MD+ +++ + RQ + + P+V +F + N + Sbjct: 763 AWLKSHYPAPFMAAVLSGVMDDTDRVSFTISEIRQMGLIVNGPNVCESNYEFSILDKNTV 822 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 Y L AIKGVG ++ E S + + L +FCSR++ + LN+R +E+L+++GA D Sbjct: 823 LYGLGAIKGVGVALVDAVVFERSTNGTYKDLFEFCSRIEKRYLNKRAIEALIYSGAFDIL 882 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G +R L+++ + A+ + + + +F+H + + R + Sbjct: 883 GVNRESLIKTYPIAIRQAEQKQSDYFSGQNGLFSH----NEYETRYLLAPSFSFKKRLQL 938 Query: 955 EQRVLGFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 E+ VLG+YF HP + Y L+ + + V + ++R+ A++ + + + G Sbjct: 939 EKSVLGYYFDNHPTNEYTVADLKNINVVLPSNIV-FRKNRDVRVLALISDLRYRSIKNGE 997 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 RI +T + + A F Sbjct: 998 RIALITIEDGSASLNAVVF 1016 >gi|217964278|ref|YP_002349956.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23] gi|217333548|gb|ACK39342.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23] Length = 1108 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 364/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D +A T E+A RC + + +LPRF E + Sbjct: 226 PNYFTSQEEMERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QNAP 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A GL+ R GA +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|290894457|ref|ZP_06557416.1| DNA polymerase III [Listeria monocytogenes FSL J2-071] gi|290555995|gb|EFD89550.1| DNA polymerase III [Listeria monocytogenes FSL J2-071] Length = 1108 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 365/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D A T E+A RC + + +LPRF KE + Sbjct: 226 PNYFTSQEEMERDWQTDFEKRACLETGELAERCHVEIALDQHLLPRFPLKEG----QNAP 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A GL+ R GA +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|58616909|ref|YP_196108.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel] gi|58416521|emb|CAI27634.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel] Length = 1122 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 464/1027 (45%), Positives = 666/1027 (64%), Gaps = 41/1027 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A AG+QPI Sbjct: 8 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNAGVQPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 68 IGCNIMVHYHGN------------NIGELVLLAKNQAGYNNIIDLVSNSFKGNQSGKLNR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F + LYV LQR Sbjct: 116 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 170 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 171 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F K E Sbjct: 231 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 287 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 346 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 406 DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 464 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 524 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 584 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 644 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 704 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 764 FFTASMNLDITDKDKLEMFCNQAKLHGISILPPDINYSKVFFVIEGSSIRYALGALKNVG 823 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S+ Sbjct: 824 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ + N + ++F + L + + NE +GFY + H Sbjct: 881 LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935 Query: 967 PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 P+ Y+ +L K+ I ++ + +A ++ + + + + + VT S+P Sbjct: 936 PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 991 Query: 1026 EYEANFF 1032 +E F+ Sbjct: 992 IHEIAFY 998 >gi|148653037|ref|YP_001280130.1| DNA polymerase III subunit alpha [Psychrobacter sp. PRwf-1] gi|148572121|gb|ABQ94180.1| DNA polymerase III, alpha subunit [Psychrobacter sp. PRwf-1] Length = 1203 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 382/1067 (35%), Positives = 594/1067 (55%), Gaps = 74/1067 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL +HS +S+ + + + ++ AAD Q A+A+TD +NL++ ++F + A I+P Sbjct: 2 AFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125 IIG ++ +D + + LL EGYQ + +VS + Sbjct: 62 IIGAEIILDDEH---------------TRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDN 106 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + + + + L + + G+I+L + +A + + + + ++ +FGDRLY Sbjct: 107 RGTPIVNKAHLLD-NSAGVIVLF-TEKSDVGQALLGANPERGHQLISEYQAVFGDRLYFA 164 Query: 186 LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 ++R R + Q + H + VA N+ FL EED++AH+ + +A S V++ + Sbjct: 165 IKRTKRALEDTFIEQAILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPN 224 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RP + + YLK +++M +FSD+P+ ++NTV +A+RC+ L + +LP F E + I Sbjct: 225 RPHDYSSEQYLKTQAQMTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETI 284 Query: 304 QKEEENELRNKAVAGLE------VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E+ R ++ GLE +++ + Y +RL+ ELN+I M F GYF Sbjct: 285 ----ESFFRAESQRGLEARLDKLYPVSERDETWPEIRRPYDERLEHELNIILEMGFPGYF 340 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD Sbjct: 341 LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPLHYDLLFERFLNPERVSMPD 400 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FDIDFC + RD VI YV ++YG E V+QIITFG++ AKA +RDV R Y D++ K Sbjct: 401 FDIDFCIEGRDRVIEYVASQYGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLADKISK 460 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532 LIP P + + + + ++ ++D + E++ KLEG+ R+ HA G+ Sbjct: 461 LIPKTPGISLKDALLE-EPQLKDLLSNPDNMDYEDANEIWEMAIKLEGITRNVGKHAGGV 519 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 +I ++ +Y D V+QF+ +E GL+KFDFLGL+ LT++ ++ + +R Sbjct: 520 LIAPNKITDFSAIYCDE-EGHRVSQFDKDDVESVGLVKFDFLGLRNLTVINAAVKNINER 578 Query: 593 GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + L +P DD Y LL T +FQLESSGM++ L +QP IED+IA+ Sbjct: 579 RARENKPALELEDLPLDDTNAYKLLQDAKTTAVFQLESSGMKKYLAKLQPTNIEDVIAMC 638 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +LYRPGP+D +V Y +RK+G+E++V HP ++P+L+ T GVI+YQEQVMQI+Q+++GY Sbjct: 639 ALYRPGPLDAGMVEMYIDRKHGREEVVYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 SL AD+LRRAMGKK EEM KQ++ F++GA+ GI I+ +F+L+ KFA YGFNKSH Sbjct: 699 SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDPVISGGVFDLMEKFAGYGFNKSH 758 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824 +AAY V++YQTA++K +YP EF+AA +T +M+N + + F D R+ ++ + PSVN Sbjct: 759 SAAYGVLAYQTAYLKYYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLSVDNPSVNRS 818 Query: 825 CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882 F I Y L AIKGVG I+ F L DFC RVD KK+N+R L Sbjct: 819 EWHFVADTPTNIIYGLGAIKGVGEGAVDSIVQARRQGGKFTDLYDFCRRVDIKKVNKRTL 878 Query: 883 ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 E+L+ +G D F + R L+ L + + A+ +N ++F+ Sbjct: 879 EALIKSGCFDDFAITQRPDLAADERHQIRGALMAQLPSAVQAAEQERQNNEMGMMDLFSE 938 Query: 930 EKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEES 986 + L S + R + E+ LG Y +GHPLD Y+ + + Sbjct: 939 VDNATT-APPLPTDSGLIWGDKHRLKAEKDTLGLYLTGHPLDQYRKEVAVYTSNARLDSL 997 Query: 987 VATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 T + A +++ G+R +T + E + + Sbjct: 998 ADTGYNGSTFFAGLIMDI-----ANFGNR-CVITLDDGTARLEVSCY 1038 >gi|110597394|ref|ZP_01385681.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031] gi|110340938|gb|EAT59409.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031] Length = 1191 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 369/1076 (34%), Positives = 573/1076 (53%), Gaps = 68/1076 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YS+ + + A ++A+TD +F+ E +A AGI+ Sbjct: 2 DFVHLHAHTHYSMQSSPIFPGELFSAAAGFGMKSVAVTDYCAIFNMPELFYEAKNAGIKL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L + L+ + PT PS+VLLV GY+ L L+SR Sbjct: 62 IIGSELLL-----LESDTHQHSRIPTSPSLVLLVQNDTGYRNLCILLSRAAKDGFVNGMP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I L+ +GL+ L+ SSG I RA + AE ++++FGD Y+ LQ+H Sbjct: 117 HIESRLLEHYH-DGLVCLSAYSSGRIGRALLAGAIDEAETFAAYYQEIFGDNFYLELQQH 175 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 + +D + + LA + LVATNN +L +D + ++A + SQ + Sbjct: 176 QAPFDEKLNRETIALAEKLSIELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAL 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 DHYLK+ EM +FSD L N++ IA +C++ P+LP F E ++E Sbjct: 236 AGSDHYLKSSDEMSRLFSDEHRELSNSLLIAEKCTYTFCQKEPVLPHFPLPEGF---QDE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L + G + + A + A+G ++ + R++ EL VI +M FS YFLIV+D I + Sbjct: 293 FTYLSHLTWEGAKEKYA-DSEAEGISKEEVKSRIELELGVIEKMGFSSYFLIVSDLIAAS 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + VGPGRGS AGS+ AY IT IDPLR+ LLFERFLNP+R SMPD DIDF + Sbjct: 352 RTLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERSSMPDIDIDFTPVGK 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA++I G+L AKAA+RD GR L++P VD+L KL+P P + Sbjct: 412 QKVLEYTVEKYGTESVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A+ + + ++ + P + L+ ++ LEG R+ S HA +VI PL + VP+Y Sbjct: 472 E-KALHESNELKQFSESSPEIRELVRYARALEGRARNVSMHAGAVVITSGPLEEQVPLYV 530 Query: 548 DV-----------------------------RSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIE AGL+K D+LGL+T Sbjct: 531 SNKIETEVRKFADEIDLDEPGPGSMKGSDGVDEKQLVTQFDKNWIETAGLLKIDYLGLET 590 Query: 579 LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R ++L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 LAVIDETLRMIKRRYDLDIELEKVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 650 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ + K+G+E I +HP+++ +LKET GVI Sbjct: 651 TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLEEILKETYGVI 710 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+SL++AD LR+AMGKK+ E M+K K F+ GA G+ T+A + Sbjct: 711 VYQEQVMQISQVMGGFSLAKADNLRKAMGKKMPEIMEKYKADFVQGAIAQGVHDTLATRV 770 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +A Sbjct: 771 FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAVLNSEIGDTERMKHLTDEA 830 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNR------IYYSLAAIKGVGTTTARHIM--EASADKP 861 + F I +PPS+N F V D+ I L+AIK VG AR ++ + + Sbjct: 831 KSFGISTLPPSINKSDALFSVEDSDDGRSCSIRVGLSAIKQVG-GAARAVVTSKLRRKRD 889 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F +L D + VD + +NR+ LE L+ AGA D R +L+ ++D K+ Q ++ T Sbjct: 890 FQNLFDLAASVDLRVMNRKALECLILAGAFDEIDQHRARLIANVDKAIKFGQMQNRSVTL 949 Query: 922 KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 F E+G ++ + + +E++++GFY S HPL Y+ + Sbjct: 950 GQCGFFTAEEGALLEEEHYPDMDQAEPMAEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAF 1009 Query: 979 GI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +E +A ++ ++VS + + RKG ++ + T + + + F Sbjct: 1010 TTLQLNAKEIIAA---KQYKVIGVIVSVKPYQDRKGKQMLFGTIEDFTGKADFTVF 1062 >gi|330998876|ref|ZP_08322603.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis YIT 11859] gi|329576090|gb|EGG57609.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis YIT 11859] Length = 1148 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 381/1024 (37%), Positives = 595/1024 (58%), Gaps = 30/1024 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL++H+ +S+ +G L+ ++ K A A+AITD +F + F + A A Sbjct: 1 MTQ--DFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G I N ++ L +GY L +L+SR +L +Q Sbjct: 59 AGIKPILGADCSITNHYNR----------DDYLRLLFLARNHQGYLTLCDLLSRAWLTNQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K + L W+ +GLI+L+G ++G I +A SS AE+ + F ++ Sbjct: 109 YKDRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSSSAAEQEARRLSQKFP-HFFM 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R D ++ V+LA LP+VAT F + ED+E H+ +A+A ++ K Sbjct: 168 ELQRVGRPNDEMLIAESVKLAKKLGLPVVATQPIQFENPEDFEFHEARVAIADGFTLANK 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR TP Y + + EM +F D+P A+EN+VEIA+RC+ +++ P LP F + Sbjct: 228 ARPRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMS 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + K+ +L + + L + Y++RL+ E+ +I M F GYFLIV D Sbjct: 288 L-KDYMAQLAREGLDRRLKVLYPDEKKREAAFPRYKERLEREIKIIQDMDFPGYFLIVQD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ R VI YV++KYG E V+QI TFG++ AK ++DVGR L M YS+ DRL ++IP Sbjct: 407 CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466 Query: 483 PAH-PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P H +A++++ +FR +P +L+E + KLEG R HA G++I L Sbjct: 467 PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526 Query: 542 LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599 P+Y + ++ ++ K +E GL+KFDFLGL TLT+++++LD++ + V+ D+ Sbjct: 527 FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNIGVRPDIE 586 Query: 600 LIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + DD +TY + T T+ +FQ ES GM + L +P + D+IAL +LYRPGP+D I Sbjct: 587 HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + + G++K P + P+L++T G+++YQEQVM +AQ + GYSL AD+LRRAMG Sbjct: 647 PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W Sbjct: 707 KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837 +K +YP EFLA+S++ M + EK K DA++ +++++ P +N ++ I Sbjct: 767 LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+KGVG+ A I + PF D RV S+ + +++++ AG D Sbjct: 827 GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R + ++ D + + AQ E + ++F E S+++ +++ + + R E EQ Sbjct: 887 NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 VLGFYFSGHPL+ Y+ L++ + +A M + +Q++ + GS Sbjct: 942 YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998 Query: 1017 WVTF 1020 +VT Sbjct: 999 FVTL 1002 >gi|229814931|ref|ZP_04445269.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM 13280] gi|229809418|gb|EEP45182.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM 13280] Length = 1272 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 345/1146 (30%), Positives = 544/1146 (47%), Gaps = 128/1146 (11%) Query: 3 QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 Q++ +FVHL H+ YS+L+GA + +++ + PA+AITD ++ E Sbjct: 4 QHM----AFVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGLAC 59 Query: 63 CAAGIQPIIGC-------------------QLDIDMQD-----------NLKMTNQGKTP 92 A G +L+ Q+ +L M ++ Sbjct: 60 DAVN----HGTPEYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNI 115 Query: 93 FPTVPSIVL---------------LVSTA--------------EGYQRLIELVSRMYLLD 123 P +V+ L +GY L++ VS + Sbjct: 116 DELKPPLVIKPIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEA-AVQ 174 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182 R+ L L+ EGLI + +G I + A + TF+ F Sbjct: 175 GFYYKPRVTLDNLRR-HREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNF 233 Query: 183 YVNLQRH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 Y+ +Q H D ++Q+A + ++ATN+ +L+ ED DV+M + Sbjct: 234 YIEIQEHGITTDSGITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGT 293 Query: 237 STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 ++ + +R R+ + Y+K EM ++F PEA +NTVEIA +C+ L + ILP + Sbjct: 294 NSKIDDPNRIRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNY 353 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 D + E++ R + GL R + D R+R +FE VI F+ Sbjct: 354 PL---LDPGETHESQFRRECEEGLAKRYGDDWDGREIGGVDIRERFEFEYKVICDKGFAA 410 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFLIVA++++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P+R M Sbjct: 411 YFLIVAEYVRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEM 470 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF +RR EVI +V+ YG E+V +IT+ +++AK A+ D R L P RL Sbjct: 471 PDIDMDFDDERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRL 530 Query: 476 CKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528 K++ DP + F EA D R+++ + +EGL R H Sbjct: 531 SKMVSADPGVKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVH 590 Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588 A ++I +++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ Sbjct: 591 ACAVLICRDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKAN 650 Query: 589 LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647 + + + +D+ IPFDD + + L+++ T G+FQ+ES+GM ++ M+P + ++AL+ Sbjct: 651 IKKSFGIDIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALI 710 Query: 648 SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 +LYRPGP+ +V Y NR NGKE VS P +D +L ET G ++YQEQVM I+ + G+ Sbjct: 711 ALYRPGPLGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGF 770 Query: 706 SLSEAD-------------VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752 S E+D +L + K E + + +++GA KNG +++A I++ Sbjct: 771 SKGESDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDD 830 Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812 + +FA Y FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R Sbjct: 831 VLEFASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHD 890 Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 I ++PP +N +F + + LA I+GVG + I+E PF +L DF R Sbjct: 891 GIAVLPPDINESGTEFTATPEGVRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVER 950 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENI 926 VDS + NRRV+E+L+ GA D GY R QL+ +D NI A +K+R ++ Sbjct: 951 VDSSQANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSL 1010 Query: 927 F----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 F E F + + ++ E+ VLG Y S HPL Y+ L K Sbjct: 1011 FDVFGDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFT 1070 Query: 983 YEES---------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 + G A MV ++ T+ G + V + E Sbjct: 1071 LSQIDTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEA 1130 Query: 1028 EANFFP 1033 FP Sbjct: 1131 TVVVFP 1136 >gi|21673669|ref|NP_661734.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS] gi|21646788|gb|AAM72076.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS] Length = 1190 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 356/1079 (32%), Positives = 566/1079 (52%), Gaps = 65/1079 (6%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + L + FVHL H+ YS+ + ++ A+A+TD +F+ E Sbjct: 1 MQPDLRSALEFVHLHTHTHYSMQSSPIFPGDLFAACKKQGMTAVAVTDYGAMFNMPELFG 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 +A A ++ I+G ++ + G +++LL+ GY+ + ++SR Sbjct: 61 QAKKAEVKLIMGAEIYLA--------GTGSRDSGKPATLILLIRDDIGYRNMCVILSRAA 112 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + S L+E +GL+ L+ SG I RA + A ++ L+G+ Sbjct: 113 RDGFSNGLPHVDRSVLEEC-RDGLVCLSAAHSGLIGRALLSGNETEAANFANYYRDLYGE 171 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238 Y+ LQ+H Y+ ++L+ +PLVATNN +L D + ++A Sbjct: 172 HFYLELQKHGAPYEEQLVPGTIRLSEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKQR 231 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + SQ + ++Y K+ +EM +F + L+NTV+IA CS+ P LP+F Sbjct: 232 LNSQNLQCLPGHENYFKSAAEMSLLFDNAHGELDNTVKIAEACSYTFINKDPHLPKFPLP 291 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E D E+ LR+ G + + A G ++ + R++ EL VI +M +S YFL Sbjct: 292 EGFD---SEKEYLRHLTWEGAKEKY---GAADGTIPEEVKARIELELGVIEKMGYSAYFL 345 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV+D I ++K VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD Sbjct: 346 IVSDLIAASRKMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDI 405 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DIDF + +V+ Y KYG E VA+++ G+L AKAA+RD GR L +P VD+L KL Sbjct: 406 DIDFTPVGKQKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKL 465 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 +P+ P + A + + DP +L++ ++ +EG R+ S HA +VI D Sbjct: 466 VPSRPGTSLE-DAFREVKELKRLVDTDPQYQQLVQYARAMEGRARNVSMHAGAVVITDGA 524 Query: 539 LSQLVPMYR--------------------------DVRSDLPVTQFNMKWIEKAGLIKFD 572 L + VP+Y VTQF+ IE+AGL+K D Sbjct: 525 LEEQVPLYVSNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKID 584 Query: 573 FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 +LGL+TL ++ ++L + +R + +DL +P DD +T+ + GIFQ ESSGM+ Sbjct: 585 YLGLETLAVIDETLRLIKKRHGIDIDLEKVPMDDRKTFRIFQEGKMAGIFQFESSGMQSY 644 Query: 632 LEGMQPDCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683 + +QP I DIIA+ +LYRPG + + + ++ +RK+G+E+I +HP+++ +LK Sbjct: 645 MMRLQPTTIGDIIAMSALYRPGALNAVIDEHRNAVDLFIDRKHGREEIDYMHPMLEEILK 704 Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743 ET GVI+YQEQVMQI+Q++ +SL +AD LR+AMGKK + M K KE F+ GA+ ++K Sbjct: 705 ETYGVIVYQEQVMQISQVMGRFSLGKADNLRKAMGKKDPKLMQKFKEEFVEGAASIDVNK 764 Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803 +A IF+L+A+FA YGFNKSH+AAY V++Y TA++K HY +EF+ A + E+ + E++K Sbjct: 765 ALATRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYTIEFITAILNSEIGDTERMK 824 Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA--- 856 +A+ F I ++PPS+N F V +++ I L+AIK VG AR ++ A Sbjct: 825 HLTDEAKGFGIFMLPPSINKSDALFSVEEHKGRPCIRVGLSAIKQVGGG-ARAVVAARLR 883 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 KPF +L D + VD + +NR+ LE L+ AGALD +R +LL ++D K+ Q Sbjct: 884 RDGKPFLNLFDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQN 943 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 K T F + + S + + E+R++GFY S HPLD ++ Sbjct: 944 KAVTLGQGGFFNDDFSDGQAGVHYPDLDNAEPMPESEKLQYEKRLVGFYLSHHPLDRFRR 1003 Query: 974 ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + ++VS + + RKG ++ + + + + F Sbjct: 1004 DWEAFASLTL-DKRDVTPSKLYKAIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061 >gi|241667125|ref|ZP_04754703.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875679|ref|ZP_05248389.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841700|gb|EET20114.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 1159 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 385/1045 (36%), Positives = 585/1045 (55%), Gaps = 45/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+++ + L ++ + A+A+TD NLF+A++F ++A + G++PI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129 G +L ID + + +VLL +GYQ ++ LVS+ Y D+ Sbjct: 62 FGVELKIDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I WL++I +I L GG +G + +A E+ + +FG D + + + Sbjct: 109 LIPKDWLKDINLANVICLNGGQNGELGKAILAKDDIRVEEIISENIAIFGRDNYIIEIHK 168 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 + + ++ A H L VATN ++F+ +DY+ H++ + T + + R Sbjct: 169 LEYENEGLYNEKALEFASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T + YLK+ EM FS+LP LENT+ IA+RC+ + P LP + Sbjct: 229 KFTREQYLKSADEMYQTFSELPVLLENTLVIAKRCNVTFDLGKPCLPTVDIPDG----LT 284 Query: 307 EENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E GL+ RLA+ + + Y+ RL E+++I M F GYFLIV Sbjct: 285 EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID Sbjct: 345 DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RD VI+YV+ KYG + V QIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 405 FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + + AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 465 TPGTTFKKILHEGEP-LYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----D 597 P+Y + + VTQF+ +E GL+KFDFLGLK LT+++ ++ + + D Sbjct: 524 FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANEVPLD 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD +T+ LL T+GIFQLES GM+Q ++ + E+IIALV+LYRPGP++N Sbjct: 584 ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + +RK+G+++ + +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAM Sbjct: 644 IPTFVDRKHGRKQTIYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTI-AVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKK EEM++Q++ F GA+K + A IF+ + FA YGFNKSHAAAYA+I+YQT Sbjct: 704 GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835 AW+K HYP E++AA M+ +M N +++ KF DA+ I ++ P+VN D I Sbjct: 764 AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L AIKG+G+ + I+ F S+ D RVD +K+N++ LE+L FAGA+ Sbjct: 824 LLGLGAIKGLGSEAIKSILNEREVGGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951 +R S++ K A +V + ++F + LE+ N Sbjct: 884 SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQ 1006 NE++ LG YFSGH +D + R + + + GN++R+ A M+ + Sbjct: 944 LINEKKALGMYFSGHIIDG-ESHWRNH--VSFSDLEKIQKPNMDGNSVRIIASMITPPAR 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 +KT+ G + + + + Sbjct: 1001 RKTKTGRVLYIINIDDEFDRADCLV 1025 >gi|167626567|ref|YP_001677067.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596568|gb|ABZ86566.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 1159 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 388/1045 (37%), Positives = 585/1045 (55%), Gaps = 45/1045 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL++H+ YS+++ + L ++ + A+A+TD NLF+A++F ++A + G++PI Sbjct: 2 FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129 G +L ID + + +VLL +GYQ ++ LVS+ Y D+ Sbjct: 62 FGVELKIDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 I WL+ I +I L GG +G + +A E+ + +FG D + + + Sbjct: 109 LIPKDWLKNINLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHK 168 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 + + ++LA H L VATN ++F+ +DY+ H++ + T + + R Sbjct: 169 LEYENEGLYNEKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + T + YLK+ EM FS+LP LENT+ IA+RC+ + P LP + Sbjct: 229 KFTREQYLKSADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDG----LT 284 Query: 307 EENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E GL+ RLA+ + + Y+ RL E+++I M F GYFLIV Sbjct: 285 EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID Sbjct: 345 DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC RD VI+YV+ KYG + V QIIT+G++ AK +RDV R + + DR+ KLIP Sbjct: 405 FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P + + AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 465 TPGTTFKKILHEGEP-LYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----D 597 P+Y + + VTQF+ +E GL+KFDFLGLK LT+++ ++ + + D Sbjct: 524 FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANETPLD 583 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 +S IP DD +T+ LL T+GIFQLES GM+Q ++ + E+IIALV+LYRPGP++N Sbjct: 584 ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643 Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717 I + +RK+G+++ +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAM Sbjct: 644 IPTFVDRKHGRKQTTYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703 Query: 718 GKKIKEEMDKQKERFISGASKNGISKTI-AVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 GKK EEM++Q++ F GA+K + A IF+ + FA YGFNKSHAAAYA+I+YQT Sbjct: 704 GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835 AW+K HYP E++AA M+ +M N +++ KF DA+ I ++ P+VN D I Sbjct: 764 AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823 Query: 836 YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L AIKG+G + I+ E A F S+ D RVD +K+N++ LE+L FAGA+ Sbjct: 824 LLGLGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951 +R S++ K A +V + ++F + LE+ N Sbjct: 884 SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQ 1006 NE++ LG YFSGH +D + R + + + GN++R+ A M+ + Sbjct: 944 LINEKKALGMYFSGHIIDD-ESHWRNH--VSFSDLEKIQKPNMDGNSVRIIASMITPPAR 1000 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 +KT+ G + + + + Sbjct: 1001 RKTKTGRVLYIINIDDEFDRADCLV 1025 >gi|145652210|gb|ABP88150.1| putative DnaE [Borrelia lonestari] Length = 1072 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 350/957 (36%), Positives = 546/957 (57%), Gaps = 19/957 (1%) Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 + ++LL GY+ L++L S YL + RI S +++ + Sbjct: 1 EFTHIKKNDELGKPYYHLILLAKNELGYKNLLKLTSISYL-EGFYYRPRIDKSDIEKY-S 58 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200 +GLI + G I + A+ +L FK +FGD Y+ LQRH + ++ Sbjct: 59 KGLICTSACIGGIIPQLIIAGRFDDAKNEILWFKTVFGDDFYLELQRHGIKQQDMVNKKL 118 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259 + + +PL +N+S ++++ED +A D+++ + + ++ +R ++ T + Y+K++ E Sbjct: 119 IGYSKELNVPLTVSNDSHYVNKEDAKAQDIIICIGTGSKINDPNRLKMETDEFYIKSQEE 178 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 M +F DLPEAL NT+EIA +C P F E + L GL Sbjct: 179 MYELFKDLPEALANTLEIAEKCDEF--EIKFPGPIFPEYQIPSEFSTLGQYLEYLTFEGL 236 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 + ++R +EL+ I +M F YFLIV DFI++A N IPVGPGRG Sbjct: 237 K-------FRYDNINDSIKERALYELSTIIKMGFEAYFLIVWDFIKFAHDNGIPVGPGRG 289 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 SGAGS+ AYAL +TDIDPL+++LLFERFLNP+R+SMPDFDIDFC + RDEVI+YV +KYG Sbjct: 290 SGAGSIVAYALRVTDIDPLKYNLLFERFLNPERVSMPDFDIDFCFEGRDEVIKYVTSKYG 349 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 +RVAQIITFG+L+ KA +DVGR L +P+S+ + + KLIP+ P + D R Sbjct: 350 EDRVAQIITFGTLKPKAVFKDVGRVLDIPFSESNEITKLIPDGPKVCLKEVF--ADGALR 407 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + L+ + LEG+ RH STHAAGIVI L+ VP+Y+D + + TQ+ Sbjct: 408 AYLNKGSIYNELMNAALVLEGMNRHVSTHAAGIVIAKTALTDYVPLYKDYKQNTVSTQYT 467 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619 M +E GL+K DFLGLKTLTL++ + + ++ I D +T+ +L + Sbjct: 468 MDLLEDCGLVKMDFLGLKTLTLIKNAEKLIRITNPDFSIANISDSDPKTFKMLAEGRSAS 527 Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679 +FQ ES GM+Q L +PD IED+IAL +LYRPGP+ I + + K G ++I HP + Sbjct: 528 VFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQFISAKTGIKRIKYPHPDLK 587 Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739 +LK T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK ++EM++ K FI GA Sbjct: 588 DVLKPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKKEDEMNRMKVDFIKGAISK 647 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G +++A++IFELL FA+YGFNKSHAAAY++I+YQTA++K +YP F+AA++T E++N Sbjct: 648 GYDESLAIDIFELLKPFANYGFNKSHAAAYSLIAYQTAYLKANYPENFMAANLTNEINNT 707 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-A 858 EK+ + ++A+ I ++ P +N +F+V D +I Y L IK +G + I+ Sbjct: 708 EKLSYYIEEAKLMGIDVLKPDINQSFKEFRVVDCKISYGLNGIKNIGGSMVDLIIAERQK 767 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 + + S EDF RVD K +N++ LES + +G D G +R L ++LD + + + Sbjct: 768 NSEYKSFEDFVRRVDDKVINKKFLESAIKSGLFDSLGQNRRTLFENLDRLIDVVTQDKND 827 Query: 919 RTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 R ++F+ + + + F + E+ +LGFY SGHPLD YK + Sbjct: 828 RKFGQNSLFSIFGPQDVAYKSFSYDIFEEYSYIELLGFEKELLGFYVSGHPLDPYKTEIE 887 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFF 1032 E +A + + ++ A ++ S + T++ + ++ + + + F Sbjct: 888 CFTDFNILEDLAIKKDSTVKFAGILNSIRVIHTKRNNAKMAFAIIEDFKGVMDIVVF 944 >gi|296113397|ref|YP_003627335.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4] gi|295921091|gb|ADG61442.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4] Length = 1240 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 390/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 233 ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDTDVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IEDIIA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDIIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|297618290|ref|YP_003703449.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297146127|gb|ADI02884.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM 12680] Length = 1031 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 309/1028 (30%), Positives = 523/1028 (50%), Gaps = 53/1028 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL VHS +S L+G S+ +++D+ A PA+A+TD +NL A++F +A AGI+PI G Sbjct: 2 HLHVHSCFSFLDGGSSIKSLVDRAAESGMPALALTDHDNLCGAVQFKLEAQKAGIKPIQG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 ++ + + LL EGY+ L ++++ +L D ++ + Sbjct: 62 VEVTVA----------------GGYHLTLLAEDEEGYRNLCRILTKAHL-DNPRRQPQAG 104 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR-HR 190 L L+E EG+I L+G G I A + L + +++G D Y+ LQ + Sbjct: 105 LDILKE-HAEGIIALSGCRKGEIPARILSRQYDAAYRAALAYLEIWGKDGFYLELQDTYL 163 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249 R + +LA + +VATNN + ED++ HD+L V T V + R Sbjct: 164 PGTRTLNRDLAELAEKLGVGVVATNNVHYACPEDFKVHDILTCVRTLTRVYEVHPERPLN 223 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +++LK EM +F + P+A+ NT EIA RC L+ A + PRF + E+ Sbjct: 224 AENHLKPEREMKKLFREYPQAVANTWEIAERCRPSLEPGASLFPRFNPPPG----QTAES 279 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR A G G + +RL+ E+++I + ++ YFL+V D +++A++ Sbjct: 280 LLRELAYRGARK-------KYGRVTRRVEERLEHEIHIINTLGYADYFLVVWDIVEYARR 332 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A S AY L IT++D L LLFERF++ +R PD DIDF RD Sbjct: 333 QGIR-HTGRGSVADSFVAYCLGITEVDSLARGLLFERFMSLERAEKPDIDIDFDARWRDR 391 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 + YV KYG ++VA++ T+ + +A++A+R++G+AL +P +++DR+ K +P Sbjct: 392 ISEYVTRKYGEDKVAKVCTYSTYRARSAVRELGKALGLPEAELDRVAKRLPYGAYADRIR 451 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 ++ RE+ L LL++ +++ G R TH G+V+ PL + P+ + Sbjct: 452 DMLSLLPELRESGLDRDKFALLLDLCERVAGFPRFLGTHLGGLVVSREPLCDITPLQQ-S 510 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 VTQF+ +E+ GL+K D L L+ ++ ++ ++ + Q D IP DD TY Sbjct: 511 AKGEIVTQFDKDDVEELGLVKLDLLSLRAMSAVEDTVRAVKQEKKTFDYEKIPLDDDATY 570 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667 ++ T+G+FQLES R + IEDI+A V+L RPGPI + Y +R+ G Sbjct: 571 RMINKGQTIGVFQLESPAQRALQARLGASDIEDIVASVALIRPGPIKGNMVEPYISRRQG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726 +E + +HP ++P+L +T GVI++QEQV++IA ++ ++ EAD LR+ M + ++ MD Sbjct: 631 REPVTFLHPALEPILAKTYGVILFQEQVIEIATAIARFTPGEADRLRKVMTHARSQKVMD 690 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + FI A +NG+S+ A IF+ +A +A YGF ++HAAA+A SY+TA++ HYP + Sbjct: 691 EVGREFIKKAVENGVSQEAAATIFKAMAGYASYGFCEAHAAAFATTSYKTAYLLRHYPAQ 750 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F AA ++ + +AR+ I+I+PP +N F+V I LA +KG+ Sbjct: 751 FYAAVLSNQPMGYYPPHVILNEARRRGIKILPPCINRSGEAFRVEKGGIRIPLARVKGLS 810 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 + I+ PF SL + + L R +++L+ GALD F +R +LL Sbjct: 811 REGLKKILVYR---PFASLTEVWEKT---GLARDEMKNLIKCGALDVFDTNRRRLL---- 860 Query: 907 NIQKYAQWVEKNRTNK--HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 K + + + E I A + G +D ++ E +LG Sbjct: 861 --VKARKLYFRPQPAGNVKEGIIAFDDGEAADAKM--DIPDFTEDEKYAMEFEILGLSPR 916 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 H + ++ L++ G K + A G+ +++A +++ + T+ G +++ + Sbjct: 917 EHLMARFRGYLKRNGFKSSRDLAALPDGSWVKVAGVLLCPHRPPTKSGRITVFMSLEDEF 976 Query: 1025 KEYEANFF 1032 + F Sbjct: 977 GLTDVTVF 984 >gi|330984024|gb|EGH82127.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1201 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 402/1055 (38%), Positives = 586/1055 (55%), Gaps = 60/1055 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS YSL + + + ++ K QPAIAI+DT+N+F+ ++ A A G++P Sbjct: 2 SFVHLSVHSEYSLHDSLIRVKPLMSKAKEFNQPAIAISDTSNMFATIKAYNGAMAMGVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGKQ 127 II ++ I KTP +I L +GYQ L EL+SR Y + Sbjct: 62 IIAAEVQI------------KTPRLPASTITLYCMNNDGYQALCELISRGYNEAPRDDQN 109 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 I L WL + T+ LI L+GG G I R N + + L +K LFGDRL++ LQ Sbjct: 110 HPVIPLEWL-DGQTDNLIALSGGREGEIGRLMMSNRKALVAEALSDYKLLFGDRLFIELQ 168 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D + V LA H+LP+VATN S FL D++ H+V +A+A V Sbjct: 169 RIGHPADDRYVKEAVSLAIEHKLPVVATNPSRFLDPADFQTHEVRIAIAQGRSVRALRED 228 Query: 247 R---VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 T Y K+ EM +FSD+P+A++NTV IA CS L + LP F + Sbjct: 229 LNPPCTQHQYFKSSEEMTELFSDIPQAIQNTVRIAALCSVDLTLGKSFLPSFPAPDKM-- 286 Query: 304 QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E + L + GLE RLA + Y +RL FEL VI +M F GYFLIV Sbjct: 287 --SEADYLEKTSYEGLEERLAYLFKDKDEIDAKRPTYVERLKFELGVINQMGFPGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI+WAK N+IPVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+ Sbjct: 345 ADFIKWAKANDIPVGPGRGSGAGSLVAYSLGITDLDPLPYDLLFERFLNPERVSMPDFDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFC D+RD+VIRYV + YGH+ V+QIIT+G++ AK +RDV RAL PY +++ +LIP Sbjct: 405 DFCMDKRDQVIRYVADAYGHDAVSQIITYGTMAAKMVVRDVARALGYPYRLGNQISQLIP 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 +P + + + D V ++ + KLEG+ R HA G++I L+ Sbjct: 465 KEPDITLEKA-LDRVPTLKVMLDTDHDVKNIMLHALKLEGITRQVGKHAGGVLISPGALT 523 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595 Q P Y D V+Q++ +EKAGL+KFDFLGL+ LT++ +L + R K Sbjct: 524 QFTPTYCDPDGGSLVSQYDKDDVEKAGLVKFDFLGLRNLTIIDHALKSINGRREKEGLAK 583 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 +D++ I D TY ++ T +FQLESSGM+ ++ +QPDC ED+IALV+L+RPGP+ Sbjct: 584 IDINGIDLTDKLTYEMIQRCETTAVFQLESSGMKNLIKRIQPDCFEDLIALVALFRPGPL 643 Query: 656 DNIV--VYNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 + + + +RK+G+ ++ HP + P+L+ T G+I+YQEQVMQIAQ+++GY+L Sbjct: 644 QSGMVDDFIDRKHGRAELSYPHPNYQYAGLKPVLEPTYGIILYQEQVMQIAQVMAGYTLG 703 Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD+LRRAMGKK EEM KQ+ F+ G KNGI +A NIF+L+ KFA YGFNKSH+AA Sbjct: 704 GADMLRRAMGKKKPEEMAKQRGGFVEGCGKNGIDAHLAGNIFDLVEKFAGYGFNKSHSAA 763 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 YA++++QTAW+K HYP +F+AA ++ +MDN +K+ +F + R ++I P N F Sbjct: 764 YALVAFQTAWLKAHYPADFMAAVLSSDMDNTDKVVRFIHECRNMGVEIQTPHANHSQWHF 823 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I Y L AIKG G + ++ ++ + + DF R LN+ +E+ + Sbjct: 824 TSHNGVILYGLGAIKGFGESASKAMLADRKAGGSYQDIIDFLRR---NSLNKSSIEACIH 880 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AG D G R +LL + + KN +F + + + +V + Sbjct: 881 AGMFDFSGLQRSELLAIYPTAASAGKQLRKNV--NQGMLFDMD----LPVVKRTETTVMD 934 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----------NNIRL 997 VR E++ LG Y +GHP Y+ L+ E ++ ++ + Sbjct: 935 DDVRLAGERKHLGLYLTGHPYAKYQTRLKHSLTASLIEIAQSVEDDVDGVEKAKFKHVTV 994 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 A ++ + KG+ + + + + F Sbjct: 995 AGLLSDIDARSNTKGT-YAFFKLDDGTARLDCSIF 1028 >gi|88658193|ref|YP_507712.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str. Arkansas] gi|88599650|gb|ABD45119.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 1120 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 457/1026 (44%), Positives = 658/1026 (64%), Gaps = 38/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++++++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 5 FVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGVQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + ++ +VLLV GY ++ LVS + Q + R Sbjct: 65 IGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIVNLVSNSFKDSQSNKVNR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L ++ +G+I+LTGG G + + N + F LYV LQRH Sbjct: 113 VDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYG--IIDKLLLAFNGNLYVELQRHG 169 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E +V AY +LPLVATN+ LF + D+ AHDVL ++ ++Q+ R T Sbjct: 170 MEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEGRKMFT 229 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +HY K+ EM +F D+PEA+ NTV IA+RCSF+ + P+LP F K E Sbjct: 230 EEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHFPCSSG----KNESQ 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 EL ++A+ GL+ RL +++ ++ Y +RL +EL++I M ++GYFLIV+DFI W+K+ Sbjct: 286 ELISQAINGLDNRLKSKSLSTEQVSK-YYERLHYELDIIISMDYAGYFLIVSDFICWSKR 344 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 345 NDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKRDY 404 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488 VI YV+ KYG VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P PV+ Sbjct: 405 VIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVKPVTL 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI D ++ + D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y D Sbjct: 463 SEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELLPLYYD 522 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + + G VD+S IP +D +T Sbjct: 523 STSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNRGGHSVDISRIPLNDRKT 582 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI +Y RK+G Sbjct: 583 YEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKHGF 642 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 EK IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Q Sbjct: 643 EKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMDNQ 702 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + FI+GA NGI + A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +EF Sbjct: 703 RRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLEFF 762 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847 ASM L++ + +K++ C A+ I+I+PP +N+ V F + + I Y+L A+K VG Sbjct: 763 TASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIEGASSIRYALGALKNVGQ 822 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +A+ I++ A + + DF RV +K +++R+LES++ AG LD +R QL +S+ Sbjct: 823 HSAKEIVDDVA---YKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESVFL 879 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++ + N ++F + L + + NE +GFY + HP Sbjct: 880 FLDIIEYNKYNANFNQFSLFND-----KNHYKLSETDDWTKEEKLNNEFSSIGFYLNHHP 934 Query: 968 LDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 ++ YK +L K+ I + ++ + ++ + + + T K + VT S+P Sbjct: 935 MENYKYLLDKLNIGFIHYDDKSSYNN---VIVGIISNVKVRSTNK-DKFAVVTLSDPFNI 990 Query: 1027 YEANFF 1032 +E F+ Sbjct: 991 HEIVFY 996 >gi|57238919|ref|YP_180055.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] gi|57160998|emb|CAH57904.1| DNA polymerase III, alpha subunit [Ehrlichia ruminantium str. Welgevonden] Length = 1119 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 463/1027 (45%), Positives = 665/1027 (64%), Gaps = 41/1027 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A G+QPI Sbjct: 5 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 65 IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F + LYV LQR Sbjct: 113 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 167 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 168 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 227 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F K E Sbjct: 228 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 283 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 284 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 342 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 343 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 403 DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 460 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 461 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 520 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 521 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 580 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 581 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 640 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 641 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 701 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 760 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 761 FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 820 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S+ Sbjct: 821 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 877 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ + N + ++F + L + + NE +GFY + H Sbjct: 878 LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 932 Query: 967 PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 P+ Y+ +L K+ I ++ + +A ++ + + + + + VT S+P Sbjct: 933 PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 988 Query: 1026 EYEANFF 1032 +E F+ Sbjct: 989 IHEIAFY 995 >gi|58578851|ref|YP_197063.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] gi|58417477|emb|CAI26681.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Welgevonden] Length = 1122 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 463/1027 (45%), Positives = 665/1027 (64%), Gaps = 41/1027 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + ++ +++ PA+A+TD+ NLF +LEFS A G+QPI Sbjct: 8 FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + + N + +VLL GY +I+LVS + +Q + R Sbjct: 68 IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L+ L ++ +G+I+LTGG G + + + V K LL F + LYV LQR Sbjct: 116 IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 170 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +++ AY LPLVATN+ LF+ +ED+ A+DVL ++ V+Q+DR Sbjct: 171 HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +HY K+ EM S+F D+PEA+ NT+ IA+RCSF+ ++ PILP F K E Sbjct: 231 FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 EL +A+AGLE RL +++ + Y +RL +EL+VI M ++GYFLIV+DFI W+ Sbjct: 287 SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R Sbjct: 346 KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 D VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P PV Sbjct: 406 DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y Sbjct: 464 TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + +RG +D+ IP DD Sbjct: 524 YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +TY +L++ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI VY RK+ Sbjct: 584 KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G EK IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Sbjct: 644 GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 Q+ FI+GA NGI++ A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E Sbjct: 704 NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F ASM L++ + +K++ FC A+ I I+PP +N V F + + I Y+L A+K VG Sbjct: 764 FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 823 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 A ++ +D ++ + DF R+ +K +++R+LE+++ AG LD +R QL +S+ Sbjct: 824 QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 ++ + N + ++F + L + + NE +GFY + H Sbjct: 881 LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935 Query: 967 PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 P+ Y+ +L K+ I ++ + +A ++ + + + + + VT S+P Sbjct: 936 PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 991 Query: 1026 EYEANFF 1032 +E F+ Sbjct: 992 IHEIAFY 998 >gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae FF5] Length = 1081 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 379/961 (39%), Positives = 544/961 (56%), Gaps = 45/961 (4%) Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168 Y+ L EL+SR ++ Q + I W+ + +EG+I L+ G I A + A+ Sbjct: 1 YRNLTELISRGFIEGQRNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEAD 59 Query: 169 KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 + L + ++F DR Y+ +QR +R D V LA H PLVATN+ F+ + D+EA Sbjct: 60 ELLREWLEVFPDRFYIEVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEA 119 Query: 228 HDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 H+ + + + R + YLK+ EM +FSDLPEALENTVEIA+RC+ ++ Sbjct: 120 HETRVCIGEGRALDDPRRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVK 179 Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRL 341 + LP F + I + R + GLE R Q Y RL Sbjct: 180 LGTHFLPNFPIPDGMTI----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRL 235 Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401 +FEL++I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY ITD+DPL + Sbjct: 236 NFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYD 295 Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461 LLFERFLNP+R+SMPDFD+DFC D RD VI YV KYG V+QIITFGS+ AKA +RDV Sbjct: 296 LLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDV 355 Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521 R Y DRL K+IP + + +A + R+ D + E++ KLEG+ Sbjct: 356 ARVQGKSYGLADRLSKMIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGI 414 Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581 R+ HA G+VI L+ P+Y D D VTQF+ +E AGL+KFDFLGL+TLT+ Sbjct: 415 VRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 474 Query: 582 LQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 + +L + + +D++ IP DD TY LL T +FQLES GM++ ++ ++ Sbjct: 475 IDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLK 534 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVI 689 PDC+ED+IALV+L+RPGP+ + +V + + + + P+L T G+I Sbjct: 535 PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGII 594 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQIAQ+++GY+L AD+LRRAMGKK EEM KQ+ FI G N I +A NI Sbjct: 595 LYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNI 654 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP F+AA ++ +M N +K+ ++ Sbjct: 655 FDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEV 714 Query: 810 RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868 R +++ P VNT F V D RI Y L AIKGVG I +A D PF L DF Sbjct: 715 RTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDF 774 Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQ 913 C+RVD K++N+R L+ L+ +GALD G +R LL +L+ + A+ Sbjct: 775 CARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAE 834 Query: 914 WVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++ + H ++F + K + R E+ LG Y +GHP+D Y Sbjct: 835 QTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEY 894 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + +R+ + + +A ++++ + K +KG ++G++T + + EA+ Sbjct: 895 EGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASL 952 Query: 1032 F 1032 F Sbjct: 953 F 953 >gi|326570853|gb|EGE20877.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC7] Length = 1240 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 390/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 233 ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNITITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|326570115|gb|EGE20160.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC8] Length = 1240 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 389/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + N+ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 233 ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNSISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|27904720|ref|NP_777846.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395824|sp|Q89AN8|DPO3A_BUCBP RecName: Full=DNA polymerase III subunit alpha gi|27904117|gb|AAO26951.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 1077 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 382/1046 (36%), Positives = 588/1046 (56%), Gaps = 38/1046 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+VHS +S+++G + N + PAIAITD++NL ++F + + GI+PI Sbjct: 6 FVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SV 129 IG + D +N I LL GY+ L+ L+SR Y + + V Sbjct: 66 IGVDFKVFPDDKYVSSNM-------FTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGV 118 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188 I WL E +G+I+L+GG G I N+ + L + + F + Y+ + R Sbjct: 119 FITKEWLVE-HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRI 177 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247 R + S++ ++ +P+VATN FL+++D+E H + + + + Sbjct: 178 GRSNEEQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYN 237 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 TP +++ +EM +F D P+A+ NT+EI++RC+ IL+ ++ + Sbjct: 238 YTPQQFMRTSNEMEELFLDFPDAISNTIEISKRCNVILKF-----NKYFLPKFQTGNMNT 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L KA G++ RL Q K Y RL ELNVI +M F GYFLIV +FI Sbjct: 293 TDFLVMKAKKGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFI 352 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAKKN+IPVGPGRGSGAGS+ +Y L IT++DPL F LLFERFLNP+R+ MPD D+DFC Sbjct: 353 NWAKKNDIPVGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCM 412 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 D+RD+VI +V YG E V+QII+FG+L AK+ +RDVGR PY ++RL KLIP D Sbjct: 413 DKRDKVIEHVSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG 472 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + +AI+ E D V L+ I+++LEG+ R+ S HA G+VI + ++ VP Sbjct: 473 MTLE-KAISQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVP 531 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LS 599 +Y D + PVTQF+ I GL+KFDFLGLKTLT++ ++ + + ++ Sbjct: 532 LYYDENGNNPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGTVKMINTKFSNNQKKLININ 591 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 I D + L T T+ +FQLES+GM+ + ++PD ED++ALV+L+RPGP+ + + Sbjct: 592 TISLKDKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGM 651 Query: 660 V--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 V + NRK+GKEKI+ H L+ P+LK T G+I+YQEQVM+I Q+ + Y+L AD+ Sbjct: 652 VDNFINRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADL 711 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRR M KK + EM+K +E F +GA +N I+ ++ IF LL +FA Y FNKSH+ +YA++ Sbjct: 712 LRRTMEKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALV 771 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 SYQT W+K +YP EF+A++M ++DN++KI + + ++I+PP+VN FKV D Sbjct: 772 SYQTLWLKLYYPEEFMASAMNADIDNIKKIVVLINECKVMKLKIIPPNVNQSDYYFKVDD 831 Query: 833 NR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 ++ I Y L AIKG+G + I+ A ++ F L D C V+SK++ +V+E L+ +G Sbjct: 832 DKNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSGG 891 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENS 948 DCFG +R L+ S + I K A K+ K ++F F+ K + + Sbjct: 892 CDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKKLYSM 951 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQ 1006 + E+ LG Y +GHP+D + +R + ++ I + M+ + Sbjct: 952 KQILDWEKDSLGLYLTGHPVDEHVHLQMRYNNVIRLKDLFNNKITTEQISILGMISFLKF 1011 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 K T+ + ++ + + E F Sbjct: 1012 KVTKTKKNMVFMILEDSFVQIEVIIF 1037 >gi|313633079|gb|EFR99983.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL N1-067] Length = 1108 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 368/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ T GY L+++ S + ++G++ + Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 SWL+ ++ LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 113 ---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 NP---RLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP F Sbjct: 692 ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I+++ PS+N F++ +N I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQIEGENAIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N R+A V + +T+KG + ++T S+ K Sbjct: 930 HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYVHEVKSIRTKKGETMCFLTISDDTK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|16800677|ref|NP_470945.1| hypothetical protein lin1609 [Listeria innocua Clip11262] gi|16414096|emb|CAC96840.1| dnaE [Listeria innocua Clip11262] Length = 1108 Score = 648 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 359/1028 (34%), Positives = 575/1028 (55%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G ++R + A + +FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEVERLLMEENRDGALEVYENLVSIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + + P+VAT + ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIEAFSAEEKAPVVATKDVQYMEPKDAQAKEVLTAIRDNRTVDWATLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +A T ++A RC + + +LPRF + ++ Sbjct: 226 PNYFTSQAEMERDWQTGFEKQACLETEKLAERCHVEIALDQHLLPRFPL----NEEQNAP 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R A++Y++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRETAYAGLKER--------NLLAKEYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP F Sbjct: 692 ERIHFVEGARSKGYSESSANQVYDMIIQFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFKDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITR---LASVSSGKIYQVAAYVHEVKSIRTKKGETMCFLTISDESK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|15615731|ref|NP_244035.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125] gi|14194680|sp|Q9K838|DPO3A_BACHD RecName: Full=DNA polymerase III subunit alpha gi|10175791|dbj|BAB06888.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125] Length = 1116 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 357/1024 (34%), Positives = 589/1024 (57%), Gaps = 42/1024 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VH+ VHS Y+LL + +++K A Q A+A+TD + ++ A+ F + +G++PII Sbjct: 4 VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + + ++ + ++L + +GY+ L++L + + ++ ++ + Sbjct: 64 GMETTVRFAEDRE------------SDLLLYARSNKGYEHLLKLSTIIQCREEKEKY--V 109 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 L + L ++ S G + + + E+ + K G + +Y+ +Q Sbjct: 110 TWEELLAYKDDLLYVI-PYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQ--- 165 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G DR + + QLA +PLV + + L ED +A V+ A+ +V + R Sbjct: 166 GTDRSKVEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVE-ELRIEQEE 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 D +EM F PEAL+NT ++A RC L + P LP+F ++ E+ Sbjct: 225 DVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPN----EQSAEDY 280 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR G + R + ++ QRL EL VI RM FS YFLIV DF+++A++ Sbjct: 281 LRKLCEQGAKERYGE------EWTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFAREA 334 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I GPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+S+PD D+DF RR+EV Sbjct: 335 SIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREEV 394 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+ KYG RVAQI+TFG+L A+A++RDVG+AL +P + ++++ K I P + ++ Sbjct: 395 IVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTL-VK 453 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A ++ R R+ A +++++++K+EGL RH STHAAG+VI ++PL++++ + + Sbjct: 454 AYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHG-Q 512 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609 ++P+TQ M+ +E GLIK DFLGL+ LTLL+ + + + ++ +P +D +T+ Sbjct: 513 GEVPLTQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLNVKQLPLNDAKTF 572 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR+ L ++P+ DI+A+ +LYRPGP++ I Y K G + Sbjct: 573 ALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGKEGTK 632 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 +I +HP ++P+L T GVI+YQEQ+MQIA ++G+SL EAD+LRRA+ KK E + +Q+ Sbjct: 633 EITYLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQE 692 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 E F++GA + G + A I+EL+ +FA+YGFNKSHA AY++++YQ A++K HYP F A Sbjct: 693 EAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFYA 752 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + + EK+++ Q+ +Q I+++PPS++ + F + + + L ++ V Sbjct: 753 ALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEGVRFPLLPLRYVSVRA 812 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 R +++A + P SL D CSRVD + + RV+ESL+ AGALD G R LL +++ Sbjct: 813 IRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANIEEAF 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 ++A+ V++ + +F ++ K + E+ +GFY SGHPL Sbjct: 872 QFAEQVKEFQE-NTGGLF----QLSVEEPEYIKVEPLTDLEKLAYEKEAVGFYLSGHPLL 926 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 Y LR+ Y + ++LA M+ ++ +T++G +G++T S+ E+EA Sbjct: 927 AYTESLRQYDRLTY---LEGTERRFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETGEWEA 983 Query: 1030 NFFP 1033 FP Sbjct: 984 VVFP 987 >gi|73666820|ref|YP_302836.1| DNA polymerase III alpha subunit [Ehrlichia canis str. Jake] gi|72393961|gb|AAZ68238.1| DNA polymerase III, alpha subunit [Ehrlichia canis str. Jake] Length = 1123 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 464/1026 (45%), Positives = 655/1026 (63%), Gaps = 38/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLL G + + ++++ PA+A+TD+ NLF +LEFS A +GIQPI Sbjct: 5 FVHLRSHSDYSLLHGMVKIESLVNLCVQHNMPALALTDSGNLFGSLEFSDCASNSGIQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC + I + ++LLV GY ++ LVS + DQ + R Sbjct: 65 IGCNIMISYNG------------DNIGELILLVKNQVGYSNIVNLVSNSFRNDQSGKINR 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+ L + +G+I+LTGG G + + N + F LYV LQRH Sbjct: 113 IDLNTLISL-KDGIIVLTGGHDGFLAQLLLGNVIDYG--IIDKLLLAFKGNLYVELQRHN 169 Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E +++ AY ++PLVATN+ LF ED+ AHDVL ++ ++Q+DR T Sbjct: 170 IEEEKLIERTLIKFAYEKDVPLVATNDILFARREDFLAHDVLSCISDGNYIAQEDRKMFT 229 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +HY K+ +EM +F D+PEA+ NTV IA+RCSF+ ++ P+LP F + E Sbjct: 230 EEHYFKSSNEMHELFVDIPEAISNTVLIAQRCSFMPEIRKPMLPHFPCSSG----RNESQ 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 EL ++A+ GL RL ++ Y +RL +EL++I M ++GYFLIV+DFI W+K+ Sbjct: 286 ELISQAIDGLNSRLKDSNLS-KEQTSKYYERLHYELDIIISMDYAGYFLIVSDFICWSKR 344 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ+ RD Sbjct: 345 NDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEGRDH 404 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488 VI YV+ KYG VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P PV+ Sbjct: 405 VIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVRPVTL 462 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI D ++ R D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y D Sbjct: 463 SEAIEMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRRLEELLPLYYD 522 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + G VD+S IP +D +T Sbjct: 523 NVSFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNNGGQNVDISRIPLNDKKT 582 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYRPGP+DNI +Y RK+G Sbjct: 583 YEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKHGF 642 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 EK IHP+++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Q Sbjct: 643 EKPDYIHPILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMDNQ 702 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + FISGA NGI + A IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +EF Sbjct: 703 RRAFISGAINNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLEFF 762 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847 ASM L++ + +K++ C A+ I+I+PP +NT V F + + I Y+L A+K VG Sbjct: 763 TASMNLDITDKDKLEMLCHQAKLHGIKILPPDINTSKVFFTIEGSSSIRYALGALKNVGQ 822 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +A+ I++ D + + DF RV +K +++R+LES++ AG LD +R QL +S+ Sbjct: 823 HSAKEIVD---DIAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESVFL 879 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 ++ + N ++F T L + + +NE +GFY + HP Sbjct: 880 FLDIIEYNKYNANFNQFSLF-----TDRAHYKLSETDDWTKEEKLDNEFSSIGFYLNHHP 934 Query: 968 LDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 ++ YK +L K+ I + + R+ ++ S + + + + VT S+P Sbjct: 935 MENYKCLLEKLNIGFINYDDRSAYNN---RIVGIISSVKVR-SASRDKFAVVTLSDPYNI 990 Query: 1027 YEANFF 1032 +E F+ Sbjct: 991 HEIAFY 996 >gi|294635137|ref|ZP_06713647.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685] gi|291091473|gb|EFE24034.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685] Length = 904 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 384/922 (41%), Positives = 553/922 (59%), Gaps = 39/922 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P F+HL VHS YS+++G + ++ K+AA PA AITD NL ++F A Sbjct: 1 MAE-PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+P++G + + + + S+ +L S GYQ L +L+S Y Sbjct: 60 AGIKPLVGADV----------LMRSEMMGDELASLTILASDNTGYQNLTQLISHAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G + I WL + +GLI+L+G G + + + + + +++ F D ++ Sbjct: 110 GAEGPTIDRDWLVQY-RQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA +LPLVA+N+ FL D++AH++ +A+ + Sbjct: 169 ELVRTGRPDEENYLHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR + Y+++ +EM +F+DLPEAL+N+VEIA+RC+ +++ + + Sbjct: 229 KRPRNYSAQQYMRSEAEMCELFADLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359 + E L KA GLE RL + Y +RL+ EL VI +M F GYFLI Sbjct: 284 GEMTTEAFLVKKAHEGLEERLTFLFPDEAERARCRPPYDERLEIELKVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD VI +V YG E V+QIITFG++ AKA +RDVGR L PY VDR+ KL+ Sbjct: 404 VDFCMEKRDRVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 + P+Y D + PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + R + L Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARHGLE 582 Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 IP DD +++ +L T +FQLES GM+ ++ ++PDC ED+IALV+L+RPGP Sbjct: 583 PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T GVI+YQEQVMQIAQ+L+GYSL Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA NG+ +A++IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTHYP EF+AA MT +MDN +K+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822 Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRV+E Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVME 882 Query: 884 SLVFAGALDCFGYSRMQLLQSL 905 L+ +GA D G R L+ SL Sbjct: 883 KLIMSGAFDRLGPHRAALMSSL 904 >gi|58584756|ref|YP_198329.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419072|gb|AAW71087.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 1112 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 464/1025 (45%), Positives = 657/1025 (64%), Gaps = 42/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+VHS YSLLE ++ + ++ ++ PA+AITD+ NLF +LEFS+ A + GIQ I Sbjct: 2 FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFSEYAASRGIQLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129 GC + + + I+LL +GY L+ LVS + + Sbjct: 62 TGCNIIVRYSE-------------QNLPILLLTKNEQGYTNLVTLVSESFRKRKNNSDIP 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L + + GLI LTGG G + + F + EK LL F LYV LQRH Sbjct: 109 YVDFDELLNL-STGLITLTGGCDGILAQLLFRQDKGIVEKLLL----AFNGHLYVELQRH 163 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + E ++ AY H +PLVATN+ F + DYEA+D+L ++ + + +R ++ Sbjct: 164 GLNKELELEETLIDFAYQHNIPLVATNDVFFPNRSDYEAYDILTCISEGSYTLENNRKKL 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T +HY K+ +EM +FSD+PEA+ NT+ IA+RCS++ + PILP+F +E K E Sbjct: 224 TTEHYFKSVAEMEKLFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL+ +A AGLE+R+A + Y RL++EL+VI M ++GYFLIV+DFI+W+K Sbjct: 280 EELKEQATAGLELRIAN---KIDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 336 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N IPVGPGRGSGAGS+ A+AL ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD Sbjct: 337 ANGIPVGPGRGSGAGSIVAWALQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 396 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YVQ KYG VAQIITFG LQA+A LRDVGR LQM Y+QVD++ K++P +P +PV+ Sbjct: 397 LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMSYTQVDKISKMVPFNPVNPVT 454 Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QAI D ++ R +D + +LL+IS KLEG+YRH STHAAGIVI D+ L VP+Y Sbjct: 455 LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 514 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D S LP+TQ++MK++EKAGLIKFDFLGL TLTL+ + Q G K+D++ + +D + Sbjct: 515 DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINQNGKKIDIASVSLNDRK 574 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY +L+ ++G+FQLESSGMR+AL ++PDCIEDIIAL+SLYRPGP+DNI Y RK+G Sbjct: 575 TYEMLSNGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYIARKHG 634 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 EK IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK Sbjct: 635 LEKPDYIHPLLERVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 694 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 Q++ F+ GA+KNG+ A IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF Sbjct: 695 QRKLFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 754 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A M L +D+ +K+ F A+ + ++ P ++ +F + I Y +AA++ VG Sbjct: 755 FTALMNLNIDDRDKLNLFYHAAKFSGVSVLLPDISKSKAEFSIEGKHIRYGIAALRNVGF 814 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + A I+ + + + +F N+R LESL+ +GA D +R QL +S+D Sbjct: 815 SIAEGIVNTRSS-TYKDIWEFIQN-SGHITNKRALESLIKSGACDSVHKNRKQLYESIDT 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + +A ++R + +F + K LEK N + E+E LGFY + HP Sbjct: 873 LVYFANKNRQDRESNQAVLFGNFNVL---KPKLEKVKDFNEEEKLEHELFSLGFYLTSHP 929 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 L+ ++ +L K+ I E + A ++++ + + + +G R +T S+P Sbjct: 930 LEKFRTLLEKLNIGFIGE------NKIAKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 982 Query: 1028 EANFF 1032 E F+ Sbjct: 983 EIAFY 987 >gi|51893023|ref|YP_075714.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|71151840|sp|Q67N73|DNAE2_SYMTH RecName: Full=Error-prone DNA polymerase gi|51856712|dbj|BAD40870.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1085 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 313/1076 (29%), Positives = 503/1076 (46%), Gaps = 89/1076 (8%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VHS +S L+GA L++++ + A PA+A+TD NN+ A+ F +KA AGIQP Sbjct: 2 SFVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------- 121 I G +L ++ + LL + +GY L L++ +L Sbjct: 62 IQGAELTLE----------------GGYHLTLLATGPKGYANLNRLITAAHLGQEPRATP 105 Query: 122 -------LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 + LS L T+GLI L+G G I AE + Sbjct: 106 GAMFALAPGHDRLQPACPLSALS-HDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRY 164 Query: 175 KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233 F R Y+ L R ++ + L LPLV T+N + E++ HD+L Sbjct: 165 AAWFPGRFYLELHDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTC 224 Query: 234 VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 V T + Q R YLK M+ F + PEA++NT+ IA RC +L + A + Sbjct: 225 VRTLTRIDQPHPERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLH 284 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F + L + G G + R+RL+ EL +I R+ Sbjct: 285 PEFQTPDGSH----PAAYLTHLVYDGAAR-------RYGRITERIRRRLEHELTIITRLG 333 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 + YFL+V D +++A++ I GRGS A S AY L ITD+D + LLFERF++ +R Sbjct: 334 YEDYFLLVWDVVRFARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLER 392 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 PD DIDF RRDEV YV KYG + VA + T+ + QA++A+RD+G+A+ + + Sbjct: 393 AQKPDIDIDFDARRRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADL 452 Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 D L K IP L +A R++ + ++L++ ++++ R TH G+ Sbjct: 453 DYLAKRIPWHAGADEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGL 512 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI RPL ++ P+ V QF+ +++E GL+K D L L+T T + ++ + Sbjct: 513 VISRRPLLEVTPLQMAA-KGQVVCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAI--- 568 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +D IP D TY +L ++G+FQLES R ++PD EDI+A V++ RP Sbjct: 569 -GDIDYEQIPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRP 627 Query: 653 GPIDNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GPI +V R++GKE++ +HP + P+L++T GV+++QEQV++IA ++G++ EA Sbjct: 628 GPIKGNMVEPFLARRHGKEEVTYLHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEA 687 Query: 711 DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 D LRR M + +E+M+ F A+ G+ +A IF + +A YGF ++HAAA+ Sbjct: 688 DQLRRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAF 747 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A +Y+TA++ HYP E+ AA M+ + I +AR+ + ++P +N F Sbjct: 748 ANTAYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFT 807 Query: 830 VGD-----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 V + I L A+KGVG A I+ A F SL Sbjct: 808 VEEWSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARDGGEFRSLA 867 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D R + R LE+LV AGA D +R L + ++ + A+ + + R + Sbjct: 868 DLVRRTGG-AVPRGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGL 925 Query: 927 FAHEKGTFSDKITL----------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + + ++ R+ E + G H + + L Sbjct: 926 LDGDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTHFMRFVRERLA 985 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G +E G +++A + V + TR G + +++ + + F Sbjct: 986 REGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIF 1041 >gi|289434854|ref|YP_003464726.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171098|emb|CBH27640.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1108 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 368/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ T GY L+++ S + ++G++ + Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 SWL+ ++ LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 113 ---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 NP---RLFGKIETFCMEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQKEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP F Sbjct: 692 ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I+++ PS+N F++ +N I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N R+A V + +T+KG + ++T S+ K Sbjct: 930 HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYVHEIKSIRTKKGETMCFLTISDDTK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|303256875|ref|ZP_07342889.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47] gi|302860366|gb|EFL83443.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47] Length = 1148 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 381/1024 (37%), Positives = 593/1024 (57%), Gaps = 30/1024 (2%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + FVHL++H+ +S+ +G L+ ++ K A A+AITD +F + F + A A Sbjct: 1 MTQ--DFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASA 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G I N ++ L +GY L +L+SR +L +Q Sbjct: 59 AGIKPILGGDCSITNHYNR----------DDYLRLLFLARNHQGYLTLCDLLSRAWLTNQ 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K + L W+ +GLI+L+G ++G I +A S AE+ + F ++ Sbjct: 109 YKDRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKFP-HFFM 167 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 LQR R D ++ V+LA LP+VAT F + ED+E H+ +A+A ++ K Sbjct: 168 ELQRVGRPNDEMLVAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANK 227 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR TP Y + + EM +F D+P A+EN+VEIA+RC+ +++ P LP F + Sbjct: 228 ARPRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMS 287 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + K+ +L + + L + Y++RL+ E+ +I M F GYFLIV D Sbjct: 288 L-KDYMAQLAREGLDRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF Sbjct: 347 FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+ R VI YV++KYG E V+QI TFG++ AK ++DVGR L M YS+ DRL ++IP Sbjct: 407 CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466 Query: 483 PAH-PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P H +A++++ +FR +P +L+E + KLEG R HA G++I L Sbjct: 467 PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526 Query: 542 LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLS 599 P+Y + ++ ++ K +E GL+KFDFLGL TLT+++++LD+ GV+ D+ Sbjct: 527 FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRPDIE 586 Query: 600 LIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + DD +TY + T T+ +FQ ES GM + L +P + D+IAL +LYRPGP+D I Sbjct: 587 HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + + + G++K P + P+L++T G+++YQEQVM +AQ + GYSL AD+LRRAMG Sbjct: 647 PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 KK EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W Sbjct: 707 KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837 +K +YP EFLA+S++ M + EK K DA++ +++++ P +N ++ I Sbjct: 767 LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L A+KGVG+ A I + PF D RV S+ + +++++ AG D Sbjct: 827 GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R + ++ D + + AQ E + ++F E S+++ +++ + + R E EQ Sbjct: 887 NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 VLGFYFSGHPL+ Y+ L++ + +A M + +Q++ + GS Sbjct: 942 YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998 Query: 1017 WVTF 1020 +VT Sbjct: 999 FVTL 1002 >gi|46907805|ref|YP_014194.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b F2365] gi|46881074|gb|AAT04371.1| DNA polymerase III, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 1108 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 362/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + ++ +LPRF + + Sbjct: 226 PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALNQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|78187124|ref|YP_375167.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273] gi|78167026|gb|ABB24124.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273] Length = 1188 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 366/1072 (34%), Positives = 554/1072 (51%), Gaps = 63/1072 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YS+ + + K A+ ++A+TD +F+ E A AG++ Sbjct: 2 DFVHLHAHTHYSMQSSPIFPGELFTKAASLGMKSVAVTDYCAIFNMPELFSDAAGAGVRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + L + + PS+VLLV GY+ L L+SR Sbjct: 62 IIGS------ELLLLEGEEHQQKQAQAPSLVLLVQNETGYRNLCVLLSRASKDGFHNGMP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + L+ +GL L+ SSG I RA ++ AE + ++++FG+R ++ LQRH Sbjct: 116 HVDPKLLETYH-DGLFCLSAYSSGRIGRALLSGAAGEAESQAAYYREVFGNRFHLELQRH 174 Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 YD + V L +PLVATNN +L D + ++A + SQ Sbjct: 175 STHYDDELNAATVALGEKLSIPLVATNNVHYLERRDAGCYRAMVANRTKEKLSSQNLLAL 234 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 ++YLK+ EM +F D L T+ IA C++ PILP F E +E Sbjct: 235 PGKEYYLKSPEEMGLLFDDRYGELSATLRIAEACTYAFSEKDPILPHFPVPEAFP---DE 291 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR+ G + G +D ++R++ EL VI +M FS YFLIV+D IQ + Sbjct: 292 AAYLRHLTWEGAREKYGDN-PEDGITPEDVKERIELELGVIEKMGFSSYFLIVSDLIQAS 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +K VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R+SMPD DIDF + Sbjct: 351 RKMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGK 410 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA+++ G+L AKAA+RD R L++P S DRL KL+P+ P + Sbjct: 411 QKVLEYTVEKYGPESVAKVVAVGTLGAKAAIRDAARVLEVPLSVADRLAKLVPSRPGTTL 470 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + RE + P + L++ ++ LEG R+ S HA +VI + PL + VP+Y Sbjct: 471 EKALLE-VKELREYADSTPEIRELMDYARALEGRARNVSMHAGAVVITEGPLEEQVPLYV 529 Query: 548 -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIE AGL+K D+LGL T Sbjct: 530 SNKIETEERQYADEIDLDEPAAGKPKSADGAGEKQVVTQFDKNWIETAGLLKIDYLGLVT 589 Query: 579 LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R V ++L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 590 LAVIDETLRLIKKRHGVDIELEEVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 649 Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ + K+G+E I +HP+++ +LKET GVI Sbjct: 650 TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGRETIDYMHPMLETILKETYGVI 709 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+S+++AD LR+AMGKK E M+K K F+ G + G+ ++A + Sbjct: 710 VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFVKGGVEQGVHDSLATRV 769 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 FEL+A+FA YGFNKSH+AAY V++Y T W+K HY +EF+ A + E+ + E++K +A Sbjct: 770 FELMAEFAGYGFNKSHSAAYGVLAYWTGWLKAHYTIEFMTAILNSEIGDTERMKHLTDEA 829 Query: 810 RQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEA--SADKPFD 863 + F I I+PPS+N F V D I L+AIK VG AR I+ A + + Sbjct: 830 KSFGISILPPSINKSDALFSVDDSTGPPAIRVGLSAIKQVG-GAARAIITARLRRKRDYL 888 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 +L D + VD + +NR+ LE L+ GA D R +LL ++D K+ Q + T Sbjct: 889 NLFDLTASVDQRVMNRKALECLILCGAFDEIDPHRARLLANIDKAIKFGQIENRAVTLGQ 948 Query: 924 ENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F+ E+GT + + +E++++GFY S HPL ++ Sbjct: 949 CGFFSVEEGTVEEDAHYPDMEPAAEMPEPEKLMHEKKLVGFYLSRHPLSPWRRDWAAFSS 1008 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 R+ +VVS + RKG ++ + + + + + F Sbjct: 1009 LQL-HMREITLSRQYRVIGLVVSTKPYCDRKGKQMLFGSIEDFTGKADFTVF 1059 >gi|326559880|gb|EGE10280.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 7169] Length = 1240 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 233 ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|326569634|gb|EGE19686.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC1] Length = 1240 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 233 ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|47094219|ref|ZP_00231932.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|226224175|ref|YP_002758282.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes Clip81459] gi|47017408|gb|EAL08228.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|225876637|emb|CAS05346.1| Putative DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465072|gb|EGF36346.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 1816] Length = 1108 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 362/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|254824367|ref|ZP_05229368.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] gi|293593601|gb|EFG01362.1| DNA polymerase III [Listeria monocytogenes FSL J1-194] Length = 1108 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 363/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R GA +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|254992099|ref|ZP_05274289.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL J2-064] Length = 1108 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 362/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|326559241|gb|EGE09672.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 46P47B1] Length = 1240 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 390/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+S ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 233 ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNHISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|254852197|ref|ZP_05241545.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] gi|258605503|gb|EEW18111.1| DNA polymerase III [Listeria monocytogenes FSL R2-503] Length = 1108 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 362/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|254931514|ref|ZP_05264873.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|293583067|gb|EFF95099.1| DNA polymerase III [Listeria monocytogenes HPB2262] gi|328474924|gb|EGF45724.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 220] Length = 1108 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 361/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AG++ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|326576416|gb|EGE26325.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E] Length = 1240 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + AGI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+S ++ RPR T Y K++ +M +F+DLP+A++NT +A RC+ + + Sbjct: 233 ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|161869391|ref|YP_001598558.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442] gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442] Length = 1109 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 387/1002 (38%), Positives = 564/1002 (56%), Gaps = 34/1002 (3%) Query: 41 QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100 PA+ I+D N F ++F + +AGI+PI + I + Sbjct: 1 MPALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWI----------GNPNAPDKPFRAM 50 Query: 101 LLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159 L++ GY RL EL++ Y+ D+ + WL+ GLI L+G G + Sbjct: 51 LIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNL 110 Query: 160 FFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNS 217 + A L + F D Y+ LQR R S V+LA LP+VAT+ + Sbjct: 111 LNGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPT 170 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276 F+S +D+ AH+ + +A V++ K RPR TPD + M+ F+DLPEALENTVE Sbjct: 171 QFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVE 230 Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-- 334 IA+RC+ + + LP F + ++ L + GL+ R+ Q + A Sbjct: 231 IAKRCNLHITLGKNFLPLFPTPDG----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAK 286 Query: 335 -QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393 +Y++RLDFELN+I +MKF GYFLIV DFI WAK + PVGPGRGSGAGS+ AY+L IT Sbjct: 287 MPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKIT 346 Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453 D+DPL+++LLFERFLNP+R+SMPDFD+DFCQ R VI YV+ KYG + V+QI+TFG++ Sbjct: 347 DLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMS 406 Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLL 512 +KA +RDVGR L++P+ D+L KLIP + P+ A+ + + +E A D L+ Sbjct: 407 SKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELI 465 Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572 +++KLE L R HA G++I +S P+Y+ S PV+ ++ +E GL+KFD Sbjct: 466 TLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFD 525 Query: 573 FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631 FLGL+ LT+++ + + + +D+ IP DD Y + T +FQ ES+GM++ Sbjct: 526 FLGLRNLTIIEMAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKM 585 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 L+ E++IA VSLYRPGP+DNI + R G+ + IHPL++ +L T G+++Y Sbjct: 586 LKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVY 644 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQ AQ++ GYSL AD+LRRAMGKK EEM K +E F GA+K GIS+ + IF Sbjct: 645 QEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFN 704 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F D R Sbjct: 705 YMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRA 764 Query: 812 FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869 I+ +PP +N F D +I Y+L AIKG G I A F L DFC Sbjct: 765 NGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFC 824 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 RV + +NRR LE+L+ GA D +R LL ++D A +K +F Sbjct: 825 ERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDM 882 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + + L + + S + E+ V+GFY SGHP Y +R++ + + Sbjct: 883 MEDAIEP-VRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ 941 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +++RLA V + + ++G I +V+ + + + E Sbjct: 942 ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQVEIMV 979 >gi|254828191|ref|ZP_05232878.1| DNA polymerase III [Listeria monocytogenes FSL N3-165] gi|258600578|gb|EEW13903.1| DNA polymerase III [Listeria monocytogenes FSL N3-165] Length = 1108 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY +L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETAIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|296132555|ref|YP_003639802.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031133|gb|ADG81901.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1028 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 316/1029 (30%), Positives = 511/1029 (49%), Gaps = 50/1029 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL VH+ +S L+GA + +++ K PAIA+TD NNL A++F Q A AAGI+P Sbjct: 2 SFVHLHVHTPFSFLDGAGKIEDLIAKAVEMGCPAIAMTDHNNLCGAVKFHQLATAAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + LL GY L +++ +L + Sbjct: 62 IIGTEITMQDGH----------------HLTLLARNPLGYANLCRILTDGHLNS-PRGYP 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ- 187 + LS L + +I+L+G G I + A + LFG ++ LQ Sbjct: 105 TVKLSTLAK-HCRDIIILSGCRMGKIPSLILRGRFREALNTAAEYLHLFGRSNFFLELQP 163 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 + + + QLA ++ +VATNN + ++E + HD+L V T + R Sbjct: 164 PLLPGSQALNNYLAQLAEQLKMDIVATNNVHYCTKEGFPVHDLLTCVRTLTKLEDVHPER 223 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 ++ LK+ +EM ++F P A+ NT+ IA RC+ L+ I P F + Sbjct: 224 RLNAENDLKSPAEMANLFYQYPRAVHNTLMIADRCAPALKPPEKIFPSFPVPSGEP---- 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR G G + +RL+ EL++I R+ + YFL+V D + + Sbjct: 280 AAAYLRRLTYEGARK-------RYGRLTRAITERLEHELDIICRLGYEDYFLLVWDLVDY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AKK I GRGS A S AY L IT++D + LLFERF++ +R PD DIDF Sbjct: 333 AKKQKIRYA-GRGSAADSAVAYCLFITEVDSINRGLLFERFMSLERAQKPDIDIDFDSRY 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RD V Y+ KYG RVA + T+ + +A++A RD+G+A+ P ++D + K +P A Sbjct: 392 RDRVADYLYKKYGSNRVAGVCTYNTFRARSAFRDLGKAMDFPAEEIDLIAKRLPFIRADQ 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ RE L +L + G R STH GIV+ PL L P+ Sbjct: 452 ID-LALEKFPELREGGLPLEKYRQLFGYCTAVSGFPRFISTHLGGIVVSRDPLVNLTPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 + + V+QF+ ++IE GL+K D L L+T+++++ + + + D IP +D Sbjct: 511 KAA-KGIVVSQFDKEYIEDLGLVKLDLLSLRTMSVVENATLTIRAENPEFDYETIPLNDK 569 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664 TY LL T T+G+FQLES R +Q C+EDI+A V+L RPGPI + + R Sbjct: 570 ATYELLNTGQTIGVFQLESPAQRALQSRLQASCLEDIVASVALIRPGPIKGNMVEPFIAR 629 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723 ++GKE + +HP + P+L++T GV+++QEQV++IA +++G++ EAD LRR M + E Sbjct: 630 RHGKEPVSYLHPKLKPILEKTYGVVLFQEQVIEIATVIAGFTPGEADRLRRVMTHARSHE 689 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +M F++ A NGISK IA IF + +A YGF ++HAAA+A +Y+TA++ HY Sbjct: 690 DMLGIGREFVAKAIANGISKEIAETIFGYIVGYASYGFCEAHAAAFATTAYKTAYLVKHY 749 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P E+ AA ++ + C +AR+ I I+PP +N DF V I SL+ +K Sbjct: 750 PAEYYAAILSHQPMGFYGSNTICVEARRRGINILPPDINLSQRDFTVEKGNIRISLSQVK 809 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ + +I+ PF ++DF +RV K++R +L L+ GA D +R QLL Sbjct: 810 GMKASVLDNILAERNIAPFSGIDDFLNRV---KIDRALLTHLILCGAFDSLHSNRKQLLW 866 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ + + ++K G+ + + + + +F E ++LG Sbjct: 867 WVNQQRTF--KLQKEERVCQN-------GSLPVNLPWPEIADYSEVEKFNWEYKILGIDV 917 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 H + ++ L K G + + G ++ A + + + TR G +++ + Sbjct: 918 RRHYMSYWRAYLDKHGFTNSLKIKSLPHGAKVKAAGLPIRPHRPPTRSGKVAVFLSLEDE 977 Query: 1024 AKEYEANFF 1032 + F Sbjct: 978 FGLVDVTLF 986 >gi|300766000|ref|ZP_07075971.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017] gi|300513318|gb|EFK40394.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017] Length = 1108 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 361/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ + LI ++ G+ G I+R + + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N ++ +D +A +VL A+ + V P Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ ++ A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI FG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGMFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|16803614|ref|NP_465099.1| hypothetical protein lmo1574 [Listeria monocytogenes EGD-e] gi|224501486|ref|ZP_03669793.1| hypothetical protein LmonFR_03047 [Listeria monocytogenes FSL R2-561] gi|254831975|ref|ZP_05236630.1| hypothetical protein Lmon1_11500 [Listeria monocytogenes 10403S] gi|284801965|ref|YP_003413830.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578] gi|284995107|ref|YP_003416875.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923] gi|16411003|emb|CAC99652.1| dnaE [Listeria monocytogenes EGD-e] gi|284057527|gb|ADB68468.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578] gi|284060574|gb|ADB71513.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923] Length = 1108 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY +L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|47096787|ref|ZP_00234369.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|254898259|ref|ZP_05258183.1| hypothetical protein LmonJ_00550 [Listeria monocytogenes J0161] gi|254912248|ref|ZP_05262260.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254936575|ref|ZP_05268272.1| DNA polymerase III [Listeria monocytogenes F6900] gi|47014820|gb|EAL05771.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609171|gb|EEW21779.1| DNA polymerase III [Listeria monocytogenes F6900] gi|293590225|gb|EFF98559.1| DNA polymerase III [Listeria monocytogenes J2818] Length = 1108 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY +L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|224499768|ref|ZP_03668117.1| hypothetical protein LmonF1_08799 [Listeria monocytogenes Finland 1988] Length = 1108 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY +L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + SWL+ ++ LI+++ G+ G I+R + A + ++FG + +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + +P+VAT N +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ + +A T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R G +Y++RL++EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + + GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + +L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F Sbjct: 692 ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|326576004|gb|EGE25927.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis CO72] Length = 1240 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 388/1087 (35%), Positives = 581/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + A I+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 233 ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|326563512|gb|EGE13771.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 12P80B1] Length = 1240 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 385/1087 (35%), Positives = 580/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + A I+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+ ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 233 ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL + + + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVEERGDDWDQVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|116873003|ref|YP_849784.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741881|emb|CAK21005.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1108 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 361/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S++ ++ K PA+AITD N L+ +EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ + GY +L+++ S + ++G Sbjct: 63 IGMTVTI----------QGYFNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189 + SWL+ ++ LI ++ G+ G I+R + A + +FG+ +Y++ Q+ Sbjct: 110 LPQSWLRAYSSD-LIAISPGAKGEIERLLMEENRDGALEAYENLVAIFGNSSVYLSAQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 +++ + E+P+VAT + +L +D +A +VL A+ + V P Sbjct: 169 NP---RLFAKIEVFSAEEEVPVVATKDVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D +A T ++A RC + + +LPRF D ++ Sbjct: 226 PNYFSSQDEMERDWQTDFEKQACLETGKLAERCHVEIALDQHLLPRFPL----DEKQNAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR A AGL+ R ++Y+ RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 DVLRQTAYAGLKER--------DLLTREYQNRLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGMTLP 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 454 KA-LQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYASEKPLTLADISLEDKK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+G Sbjct: 572 TLTLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KEKI HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S+ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP F Sbjct: 692 ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I ++ PS+N F++ + I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 I+ PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D Sbjct: 812 AKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+ Y+ L+ + I + G N ++AA V + +T+KG + ++T S+ +K Sbjct: 930 HPVSYYQNKLQNLSITKLANITS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986 Query: 1026 EYEANFFP 1033 E A FP Sbjct: 987 ELSAVMFP 994 >gi|326560771|gb|EGE11138.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 103P14B1] Length = 1240 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 389/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHL + S Y++++ + + +++ AD Q +A+ D NN+F+A++F + GI+P Sbjct: 2 SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGDGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 IIG ++ + + K S++L + GYQ L+ L+S Y Sbjct: 62 IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114 Query: 125 --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 ++ I + L E E + +LT I + ++ A L T++ +FGDRL Sbjct: 115 SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172 Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229 Y+ ++R + D + A + ++A N+ F+ ++AH+ Sbjct: 173 YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232 Query: 230 VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288 + +A+S ++ RPR T Y K++ +M +F+DLP+A+ENT +A RC+ + + Sbjct: 233 ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292 Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342 +LP F + + I E + + GL RL Q + Y +RLD Sbjct: 293 INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348 Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402 +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L Sbjct: 349 YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408 Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462 LFERFLNP+R+SMPDFDIDFC + RD VI YV YG + V+QIITFG++ A+A +RDV Sbjct: 409 LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468 Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517 R P+ DR+ K+IP P + A + + +E + D + E+++K Sbjct: 469 RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527 Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577 LEGL R+ HA G++I +S +Y D PV+Q++ +E GL+KFDFLGL+ Sbjct: 528 LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586 Query: 578 TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631 LT+LQ ++D + Q DL +P DD + Y +L T +FQLESSGM++ Sbjct: 587 NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646 Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684 L ++P IED+IA+ +LYRPGP+++ + + +RK+G +++ HP + P L+ Sbjct: 647 LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706 Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744 T GVI+YQEQVMQIAQ+L+GY+L AD+LRRAMGKK EEM KQ+ F+ GA + I Sbjct: 707 TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766 Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804 +A IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++ Sbjct: 767 LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826 Query: 805 FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862 D R + I+PPSVN F V D I Y L A+KGVG I+ A D F Sbjct: 827 LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906 L DFC+RVD KK+ +R LE+L+ AG D + R L + L Sbjct: 887 KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 A +N+ ++F + LE R EQ LG Y +GH Sbjct: 947 EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005 Query: 967 PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 PLD Y+ L +K + T +G +A ++ G RI V + Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059 Query: 1026 EYEANFF 1032 E + + Sbjct: 1060 RIEMSCY 1066 >gi|269120359|ref|YP_003308536.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614237|gb|ACZ08605.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1122 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 358/1027 (34%), Positives = 572/1027 (55%), Gaps = 36/1027 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSLLEG + LD+ +A+TDT +F +EF +KA GI+PI Sbjct: 6 FVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDTA-MFGVVEFYEKAFKKGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ +D S+ LL GY+ L +L S + ++ Sbjct: 65 IGLEIFMD-----------GFFSEGEYSLTLLARNQTGYKNLCKLSSLSFSRFNRSRNK- 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ +EGL +L+GG + + + + + + FG+ YV + Sbjct: 113 IRYEELKK-HSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAE 171 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + + +++A VA N+ + + D +++++ T ++ ++ Sbjct: 172 RL-KDKVKLYIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYN 230 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 D YLK+ +M FS +A+EN+++IAR C+ + P + E K E Sbjct: 231 DLYLKSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEG----KSETEY 286 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 +R GL+ + + + +R ++EL++I +M ++GYF+IV DFI++AK N Sbjct: 287 IRELVYDGLKKKYGEPL------EEKITERAEYELDIINKMGYNGYFIIVWDFIKYAKDN 340 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I VGPGRGS AGS+ +YAL IT++DP++++L+FERFLNP+R+SMPD DIDF Q++R++V Sbjct: 341 GIYVGPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQV 400 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV KYGHE+VA IITFG+L+A+AA+RDVGR L + +VD++ KLIP+ Sbjct: 401 IDYVVKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHFS---ELED 457 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A+ + + +D V +++ S KLEG RHAS HAAG+VI L +P Y D R Sbjct: 458 AVKNVRELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGR 517 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609 + TQ+ MK +E G++K DFLGLK LT+L+K+++ + + L IP DD ETY Sbjct: 518 ASFLSTQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGKVMVLDDIPLDDKETY 577 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 +LT TLG+FQ ES G+R+ ++ M+ + EDI+AL++LYRPGP+ + +V + + E Sbjct: 578 KMLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNE 637 Query: 670 --KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 I H + +L ET GVI+YQEQV++I +L+ Y++ E D LRRAMGKKI E M + Sbjct: 638 GAAIKYPHEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPELMAQ 697 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +E FI A +N I+ A IF L+ KF+ YGF KSH+ AYA+++Y TA++KT+Y EF Sbjct: 698 NREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNYFKEF 757 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 AA+M+ EM N++++ F +AR ++++ P VN +F + I + L AIK VG Sbjct: 758 FAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDGIRFGLLAIKHVGI 817 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + ++E ++ FDS EDF + + LN++ LE+ VF+G+LD +R ++ S+D Sbjct: 818 NIVKKVIEVRKNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMFSSIDR 877 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + ++ + + + +F K ++EK + S+ E E+ LG Y S HP Sbjct: 878 VLEWCEKKFNSEEDLQMILFGG-KSQKIGLFSMEKSEEYSESLLLEKEKEFLGVYLSKHP 936 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026 LD YK ++R + + G R+ +V ++ T+K G + + + Sbjct: 937 LDNYKLLMRTIDKTRMDSLKQ---GKRARVIGLVKDIKKMITKKTGEPMARFFVEDYGTK 993 Query: 1027 YEANFFP 1033 E FP Sbjct: 994 AEVVCFP 1000 >gi|160947425|ref|ZP_02094592.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270] gi|158446559|gb|EDP23554.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270] Length = 1122 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 340/1042 (32%), Positives = 567/1042 (54%), Gaps = 51/1042 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + FVHL VH+ YSLL + +++K A+AITD NN++ ++F ++ Sbjct: 1 MAN--DFVHLNVHTEYSLLNNYNPIEKLIEKAKELNFKAMAITDYNNMYGVIDFYKRCKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+PIIGC+L + +N +I+LL GY+ L +LVS +Y+++ Sbjct: 59 NSIKPIIGCELTLSYSNN------------EFYNIILLAKNNLGYKNLCKLVSNLYVVEN 106 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 + I L++ ++ LI++ G I + + A+ +L FK LF + L+ Sbjct: 107 RNREF-ITFDELEKY-SKNLILIVGSKRSFIRKCLYSEDILSAKNEILNFKSLFNREDLF 164 Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L H D ++ ++ A + V TN+ +L D+ + ++ ++S+ Sbjct: 165 LELNFHFEENDELMMNRYLEFANEVNIETVVTNDVHYLENTDFNLFKIARCISKGVLLSE 224 Query: 243 KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 T +++LK+ EM+ IFS L +++ NT IA+RC+ LP + Sbjct: 225 LKEDNFTQAEYFLKSEEEMLKIFSTLEDSMYNTKMIAQRCNVEFDFSTYHLPEYKVP--- 281 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 D +E+ L + + G++ R + ++R+++E +VI +M F+ YFLIV Sbjct: 282 DGVSTKEDYLHSLIIEGMKKRYEN-------LTDEIKKRVNYEFSVINKMGFTDYFLIVW 334 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+ +AKKN IPVGPGRGSGA S+ AY L ITDIDP+ + L+FERFLNP+R+SMPDFDID Sbjct: 335 DFVNFAKKNKIPVGPGRGSGANSIVAYCLEITDIDPIEYDLIFERFLNPERVSMPDFDID 394 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 FC +RR+EVI YV KYG V+QIITFG+++ +AA+RD+GR L S VD++ KLIPN Sbjct: 395 FCNERREEVIDYVIKKYGKNHVSQIITFGTMKPRAAVRDIGRVLGYKLSTVDKVAKLIPN 454 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + A+ D ++ D ++ +L+ IS+K E +RH S HAAGIVI L++ Sbjct: 455 NLDVTFK-NALRDSLELKKLYDEDINIKKLINISEKFEKFHRHISIHAAGIVITKEELTE 513 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600 +P+ + VTQFNM +E+ GL+K DFLGL+TLT++ ++ + + + D+ Sbjct: 514 YIPL--AKSGENIVTQFNMVELEELGLLKMDFLGLRTLTVIDDTIKLVKKNYNRDIDIEK 571 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 I +D +L T T+GIFQ ES+GMR L+ ++ D ++++A SL+RPGP++ I Sbjct: 572 ISLNDKNVLNLFKTADTIGIFQFESTGMRLFLKDLKADNFDELVAANSLFRPGPMNQIPN 631 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y K I + ++ LK T G+I+YQEQVMQIA+ L+GY+ +AD LR+A+GKK Sbjct: 632 YIKNKRNPSGIRYLDKRLEKYLKSTYGIIVYQEQVMQIARELAGYTWGQADNLRKAIGKK 691 Query: 721 IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 + M+ ++ FI G +NG+ + +A NIF+L+ +F +Y FNKSH+A Sbjct: 692 HMDIMEYNRKIFIYGLDNLDGSIKIKGCIRNGVDEKLAQNIFDLIVEFGNYAFNKSHSAC 751 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 Y++ +Y+TA++K +YP+E++ + ++ + + Q+ ++ I+I+ PSVN Sbjct: 752 YSLNAYRTAYLKYYYPLEYMVCLLNSVINYERQFFLYFQEIKRMGIKILLPSVNFSFYKI 811 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVF 887 + + + IKG A+ I+EA F + ++F R+ DSK +N +E+L+ Sbjct: 812 STENKCMRVGFSQIKGFNRLLAKDIIEARKAGKFKNFKEFLERLKDSKNMNLISIENLIK 871 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +GA D +R+++L S + + KN + ++ + + + ++ + Sbjct: 872 SGAFDEIEKNRIEILNSCETLFTQIVSKSKNELSGQLSLISSD----FMQEKFVEYKNFS 927 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 E E+ VLGFY S HPLD YK ++ + +G ++ V S + + Sbjct: 928 KDDTLEFEKDVLGFYISAHPLDSYKEYIKSKNSMKLIDLKVLDKG-IYKVIVYVNSVKTR 986 Query: 1008 KTRKGSRIGWVTFSEPAKEYEA 1029 K++K + + + + E Sbjct: 987 KSKKNKTLKIINVEDFSSSIEL 1008 >gi|332184948|ref|ZP_08386697.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17] gi|332014672|gb|EGI56728.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17] Length = 1157 Score = 638 bits (1646), Expect = e-180, Method: Composition-based stats. Identities = 463/1037 (44%), Positives = 628/1037 (60%), Gaps = 30/1037 (2%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 L++ SS+++L+GA+ I + A+ PA +TD N L++A+ FS A AG+QPIIG Sbjct: 2 PLRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKAGVQPIIG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 L + D + P V I L GY L LVS +L + + + Sbjct: 62 TMLGVARPD------MPDSVTPVVDWIALYAQDMTGYDNLCALVSAAHLERPIELAAHVG 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L + + GLI LT G G I R F A+ + +FGDRLY+ L R Sbjct: 116 FDTLGKF-STGLIALTAGGEGGIARLFAEGQPDRAKAYCDRLQAMFGDRLYIELARRDDP 174 Query: 193 -DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + E ++ LAY +LPLVATN F +AHD ++ +A+ST V DRP+ +P+ Sbjct: 175 TEIAAEQDLIDLAYDRDLPLVATNPCCFADSGFRDAHDAMLCIANSTYVEMDDRPKSSPE 234 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 +LK M +F+DLPEA++NT+ +A+RC+ + + I ++ E L Sbjct: 235 AWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAP-----WRKPILPSLAGDREGEAAML 289 Query: 312 RNKAVAGLEVRLAQGAIAKGY----HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 R A AGLE RL + A +G + Y +RL FE+++I +M F GYFLIVADFI+WA Sbjct: 290 RRDATAGLEARLDRIAELEGEGEPGWREAYHERLTFEVDIIIQMGFPGYFLIVADFIKWA 349 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K ++IPVGPGRGSGAGSV A+ALTITD+DPL+ LLFERFLNP+R+SMPDFDIDFC+ RR Sbjct: 350 KDHDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P P Sbjct: 410 GEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 469 Query: 488 S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +A+ + D V RLL+++ KLEGL RH+STHAAG+VIGDRPL+QLVP+Y Sbjct: 470 DLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLVPLY 529 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ L +RGV VDL + +DD Sbjct: 530 RDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLRKRGVDVDLGALAWDDE 589 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY LL T+G+FQLES GMR+ L ++P DIIALVSLYRPGP+DNI + RK Sbjct: 590 ATYALLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQ 649 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G E+I+ HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL AD+LRRAMGKK+K EMD Sbjct: 650 GTEEIIYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKAEMD 709 Query: 727 KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 Q+ F+ G + NGI A +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H+P Sbjct: 710 AQRAIFVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPH 769 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLAA 841 EF AASM +M +K+ F DAR+ + ++PP +N +F V + Y+L A Sbjct: 770 EFYAASMCYDMALTDKLAIFVDDARRMGVTMLPPCINASQAEFDVEPYEDGLAVRYALGA 829 Query: 842 IKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +K VG + +E A F SL+ RVD + +N+R LE+L AGA D +R Sbjct: 830 LKSVGEGAMEKLVVEREAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEANRAG 889 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + + + A + RT+ +F E D I L S R E E+ G Sbjct: 890 VHAVAETVLAIAARTHEGRTSGQGGLFG-ETEVAGDAIKLPSGVRWTLSQRMEQEKEAFG 948 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI--RLAAMVVSKQQKKTRKGSRI 1015 FYFS HP+D + I + G + Y I G I +AA+V + + + +G R Sbjct: 949 FYFSAHPVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARGKRY 1008 Query: 1016 GWVTFSEPAKEYEANFF 1032 S+ ++ A F Sbjct: 1009 MMAQLSDATGQFLATCF 1025 >gi|145219820|ref|YP_001130529.1| DNA polymerase III, alpha subunit [Prosthecochloris vibrioformis DSM 265] gi|145205984|gb|ABP37027.1| DNA polymerase III, alpha subunit [Chlorobium phaeovibrioides DSM 265] Length = 1187 Score = 638 bits (1646), Expect = e-180, Method: Composition-based stats. Identities = 362/1069 (33%), Positives = 557/1069 (52%), Gaps = 58/1069 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL H+ YS+ + + + A +IA+TD +F+ E +A +GI+ Sbjct: 2 DFVHLHAHTHYSMQSSPVFPGQLFEAAAKLGMQSIAVTDYGAIFNMPELFSEAEKSGIRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + ++ S++LLV GY+ L L+SR Sbjct: 62 IIGSEILL-----RETSHHQDGRNTPASSLILLVQNDTGYRNLCILLSRAARDGFVDGMP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + S +E GL+ L+G SSG I R+ + A + + ++ +FGDR Y+ LQRH Sbjct: 117 HLERSLFREFH-GGLVCLSGYSSGRIGRSLLAGAVDDAREHAVFYRDIFGDRFYLELQRH 175 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 + D S + LA + +VATNN +L +D + + + A+ + SQ Sbjct: 176 NSHFDDELNSSTIALAEECGVGVVATNNIHYLERKDSDCYRAMAALKAKQKLSSQNLSAL 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +H+LK+ +EM +F D L NTV IA CSF+ + PILP F E +E Sbjct: 236 PGSEHFLKSPAEMRELFGDGHGELSNTVFIAESCSFVFREKEPILPHFPLPEGF---ADE 292 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR+ G + + G ++ R R++ EL VI +M FS YFLIV+D I + Sbjct: 293 AAYLRHLTAEGAKEKYP-GISEDEPSQEEVRDRIELELGVIEKMGFSSYFLIVSDLIAAS 351 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT IDPLR+ LLFERFLNP+R+SMPD DIDF + Sbjct: 352 RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y +YG E VA+++ G+L AKAA+RD R L +P S D+L KL+P P + Sbjct: 412 QKVLDYTVERYGAESVAKVVAIGTLGAKAAIRDAARVLDVPLSVADQLAKLVPQRPGITL 471 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+++ +E A P L+ + LEG R+ S HA +VI PL + VP+Y Sbjct: 472 E-TALSEVRELKEQAEATPQNRELMTYASALEGRARNVSVHAGAVVITGGPLEEQVPLYV 530 Query: 548 ---------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580 +TQF+ WIE AGL+K D+LGL+TL Sbjct: 531 SNRIETEARVSLDAIAPEAPQPGKHADPSAGKQVITQFDKNWIETAGLLKIDYLGLETLA 590 Query: 581 LLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639 ++ ++L + +R ++DL +P D +T+ + GIFQ ESSGM+ + +QP Sbjct: 591 VIDETLQLIRRRHNVEIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTQ 650 Query: 640 IEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVIIY 691 I DIIA+ +LYRPG ++ + K+G+E I +HP+++ +LKET GVI+Y Sbjct: 651 IGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREVIDYMHPMLETILKETYGVIVY 710 Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751 QEQVMQI+Q++ G+SL++AD LR+AMGKK E M++ K F+ GA G+ T+A +FE Sbjct: 711 QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMERFKVDFVQGAVAQGVHDTLATRVFE 770 Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811 L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ + E++K +AR Sbjct: 771 LMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDTERMKHLTDEARS 830 Query: 812 FNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866 F I +PPS+N F V ++ I L+AIK VG I + F +L Sbjct: 831 FGIATLPPSINRSDAIFSVEESPDGAAIRVGLSAIKQVGGAAKAIIAARLRRKREFLNLF 890 Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926 D + VD + +NR+ LE L+ AGA D R +L+ ++D K+ Q ++ Sbjct: 891 DLTASVDQRVMNRKALECLILAGAFDEIDSHRARLIANIDKAIKFGQIENRSAALGQCGF 950 Query: 927 FAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983 F E+G + + ++E+R++GFY S HPL ++ + Sbjct: 951 FTAEEGAVQEDGHYPDMENALQMPEQEKLQHEKRLVGFYLSRHPLSPWRRDWQAFASLHL 1010 Query: 984 EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E + R+ +VVS + + RKG ++ + + + + + F Sbjct: 1011 NE-RDVVAQRQYRIIGLVVSTKPYQDRKGKQMLFGSIEDFTGKADFTVF 1058 >gi|119357011|ref|YP_911655.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM 266] gi|119354360|gb|ABL65231.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM 266] Length = 1190 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 369/1072 (34%), Positives = 567/1072 (52%), Gaps = 61/1072 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL VH+ YS+ + + + +IA+TD F+ E +A AGI+ Sbjct: 2 DFVHLHVHTHYSMQSSPVFPAELFSACSRFGMKSIAVTDYCAAFNMPELFAEAENAGIKL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +L + L+ + +T PS++LLV EGY+ L L+SR Sbjct: 62 VIGTELYL-----LESASHHQTRHTVSPSLILLVQNDEGYRHLCILLSRAAKDGFINGMP 116 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 I S L+ GLI L+G SSG I +A + + AE + +K +FGD Y+ LQ H Sbjct: 117 HIESSLLEACH-GGLIALSGYSSGRIGKALLSGAQEEAESFVRYYKSVFGDNFYLELQNH 175 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247 R +D + +A + + LVATNN +L +D + ++A + SQ + Sbjct: 176 RMPFDDELRKATIAIAEKYAVELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAH 235 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 ++YLK+ EM +F D+ +AL NTV I+ +C++ + + + +E Sbjct: 236 AESEYYLKSPEEMAMLFPDISKALTNTVIISDKCTYAFKKKDHPILPHF--HLPEGFSDE 293 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR+ G + + A A G ++D R++ EL VI +M FS YFLIV+D I + Sbjct: 294 AAYLRHLTWEGAKEKYADSG-ADGISSEDVEARIELELGVIEKMGFSSYFLIVSDLIAAS 352 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ VGPGRGS AGS+ AY IT IDPL++ LLFERFLNP+R SMPD DIDF + Sbjct: 353 RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 412 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +V+ Y KYG E VA++I G+L AKAA+RD GR L++P VDRL KL+P P + Sbjct: 413 QKVLEYTVEKYGSESVAKVIAIGTLGAKAAIRDAGRVLEVPLPVVDRLAKLVPTKPGITL 472 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AI++ ++ + P LL+ ++ LEG R+ S HA +VI PL + VP+Y Sbjct: 473 E-KAISEVRELKQFVESSPQTRELLDYARALEGRARNVSMHAGAVVITAGPLEEQVPLYV 531 Query: 548 D-----------------------------VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578 VTQF+ WIEKAGL+K D LGL+T Sbjct: 532 SNKIETEVRKYADELDLGEPDPVVSKTAEVADEKQVVTQFDKNWIEKAGLLKIDLLGLET 591 Query: 579 LTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637 L ++ ++L + +R + L +P +D +T+ + GIFQ ESSGM+ + +QP Sbjct: 592 LAVIDETLRLIQRRHQRTIELEKLPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQP 651 Query: 638 DCIEDIIALVSLYRPGPIDNI--------VVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689 I DIIA+ +LYRPG ++ ++ +RK+G+E I +HP+++ +LKET GVI Sbjct: 652 TQIGDIIAMSALYRPGALNARIDDHRNAVDLFVDRKHGREAIDYMHPMLEIILKETYGVI 711 Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749 +YQEQVMQI+Q++ G+SL++AD LR+AMGKK E M K +E FI GA G+ +A + Sbjct: 712 VYQEQVMQISQVMGGFSLAKADDLRKAMGKKKPEIMSKYEEDFIKGAVAQGVHDALARRV 771 Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809 F L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A + E+ ++E++K +A Sbjct: 772 FTLMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDIERMKHLTDEA 831 Query: 810 RQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFD 863 + F I +PPS+N F V ++ I L+AIK VG AR I+ + F Sbjct: 832 KSFGIATLPPSINKSDTLFSVEEHNGKASIRVGLSAIKQVG-GAARAIVTSRMRKKREFI 890 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923 +L D + +D + +NR+ LE L+ +GALD R +L+ ++D K+ Q ++ T Sbjct: 891 NLFDLTASLDLRLMNRKALECLILSGALDEIDEHRARLIANIDKAIKFGQVQNRSVTLGQ 950 Query: 924 ENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 F E G + I S + +E++++GFY S HPL Y+ Sbjct: 951 CGFFTSEHGGVMEDIHYPDMDPADPMPDSEKLLHEKKLVGFYLSRHPLSTYRRDWEAFTT 1010 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ ++ +VVS + + RKG + + + + + F Sbjct: 1011 LQL-DAKEVTPARQYKVIGVVVSVKPYQDRKGKPMLFGAIEDFTGKSDFTVF 1061 >gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III, epsilon subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 1435 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 341/1068 (31%), Positives = 551/1068 (51%), Gaps = 64/1068 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66 H+ H+S+S+L + + +++++ PA+ ITD N+ A F +A Sbjct: 251 HIHNHTSFSILYSTIDIQSLIERAIYFDMPAVGITDYGNMMGAFHFLNAIHSANKKYSSL 310 Query: 67 ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 I+ I+GC++ I D K V L GYQ L +L S ++ Sbjct: 311 KKYIKGIVGCEVFIS--DFYSQKKFTKEQPDKRYHQVFLSKNKAGYQNLSKLCSHGFIEG 368 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 R+ +++ + LI LTG I + AEK L +K+LF + Y Sbjct: 369 FYAGVPRVGKDLIEKY-KKNLIALTGDLYAEIPQTILNKGKIKAEKVFLWWKELFEEDFY 427 Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L RH + Y +++ + + + + NN+ +L ++ AHD+L+ V + S Sbjct: 428 IELLRHGLEEEDYVNKVLLKFSEKYHVKYIVQNNTFYLDPKESYAHDILLCVKNGEKKST 487 Query: 243 K-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + Y K+ EM IFSD PE+ + E+ + +LP+F Sbjct: 488 PIGRGRGYRFGFPNHEFYFKSPEEMKEIFSDFPESFDFLEELVNKVESYHLSQKVLLPKF 547 Query: 296 IEK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347 + D + E + LR+ A G + R + ++R+ FEL Sbjct: 548 KIPESFENSLDKIDGGHRGENSFLRSLAYEGAKKRYPHM-------TPEIQERIHFELKT 600 Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407 I ++ + GYFLIV +FI AKK NI VGPGRGS AGSV AY + ITDIDP++++LLFERF Sbjct: 601 IEKIGYPGYFLIVQNFISQAKKMNISVGPGRGSVAGSVVAYCIGITDIDPIKYNLLFERF 660 Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467 LNPDR+S+PD DIDF R+++I +V KYG +VAQIIT+ ++ AK+A+RD R L + Sbjct: 661 LNPDRISLPDIDIDFDDKGREKIIEWVVQKYGKNQVAQIITYATMGAKSAIRDTARVLDL 720 Query: 468 PYSQVDRLCKLIPNDPAH------------PVSLQAIADDSRFREARLADPS-VDRLLEI 514 + D L K++PN + +S + + + + + + ++L+ Sbjct: 721 SLKKTDYLAKMVPNLLSLKILLSKKDHLLEKMSKEDMENVKKLKSISEKKDTLEGQVLQQ 780 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEG R HA GI+I + + VP+ SDL +TQF+ +E+AGL+K DFL Sbjct: 781 AKILEGSIRSTGIHACGIIISSYDIKEYVPVSISKESDLLITQFDNHVVEQAGLLKMDFL 840 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 GLKTLT++++ L+ + +R +S P +D +TY L T+ +FQ ES GM++ L Sbjct: 841 GLKTLTIIKEVLNIIKKRINVEKIS-FPLEDIKTYSLFQKGETVAVFQYESPGMQKYLRL 899 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 ++PD +D+IA+ +LYRPGP+ + + RK+GKE I P ++ LKET G+ IYQEQ Sbjct: 900 LKPDKFDDLIAMNALYRPGPLQYLTNFIYRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 959 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++G+S E D LR+AMGKK KE ++K K +FI AS+ G K I I++ Sbjct: 960 VMLIAQKIAGFSKGETDFLRKAMGKKQKEVLNKMKNQFIIQASRKGYPKKILEKIWKDWE 1019 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNKSHA YA I++QTA++K H+P E++A+ ++ MDN++++ F ++ ++ I Sbjct: 1020 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPSEYMASVLSHNMDNIKQLTYFIKECKRMGI 1079 Query: 815 QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872 ++ P +N FKV D N I + + IKGVG ++I++ + P+ S+ D R+ Sbjct: 1080 SVIGPDINESDAFFKVTDSNCIRFGMRGIKGVGENAVKNIIQERENHGPYTSIFDLVKRI 1139 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHE 924 D + +N++ LESLV +G+LD F R Q +L+ I ++ +K + + Sbjct: 1140 DLRIVNKKTLESLVLSGSLDKFHIHREQYFHFEEEKKLSTLEKIIRFGSKFQKRKMQEK- 1198 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 N +K +K + K N+ + E+ VLG Y S HPLD Y + + Sbjct: 1199 NFPKKKKKIEVEKPMIIKSEPWNNIYKLSKEKEVLGLYASSHPLDDYSYERKYFTNLSLD 1258 Query: 985 ESVATIR---GNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYE 1028 + + G I + ++ ++ + G + G + E Sbjct: 1259 QLNKNEQKLIGKEIYICGILSKIEKKIYIKSGKKYGIFLLEDYHSSKE 1306 >gi|311031337|ref|ZP_07709427.1| DNA polymerase III DnaE [Bacillus sp. m3-13] Length = 1108 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 362/1022 (35%), Positives = 586/1022 (57%), Gaps = 45/1022 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL + SSYSLL ++ + ++++ ++A+TD + ++ A++F + +A I+PII Sbjct: 4 VHLYIKSSYSLLNSSVRFSKLVERANELGLNSLALTDEDVMYGAVDFYKACKSANIKPII 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G L + + ++LL +G+ L++L S + + Sbjct: 64 GLTLSV---------LSDGEDGESTYPVILLAKNNQGFTNLMKLSSVVQTKSPQG----V 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 WL+ T+GLI + GS + + N Q AE L F++ D LY+ + R+ Sbjct: 111 PKRWLKHY-TKGLIAILSGSESELAQ----NEEQTAEAYLEMFEQ---DCLYLGIDRNSA 162 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 R + + ELP+VA + +L +ED ++ L ++ T + + Sbjct: 163 ESREQSETTRK--RHSELPIVAMSKVHYLHKEDVFVYECLRSIKQGTKLESLPKEAPDYL 220 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 +++ D ALENT +I+ +C L+ LP + E ++ + L Sbjct: 221 RATNEMTQLFEDIPD---ALENTWKISNQCHVELEFGQAALPSYPVPE----EENADEYL 273 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 GL G AQ+Y++RL +EL VI MKFS YFLIV DF+ +A+ Sbjct: 274 EKICWEGLHK-------RVGEPAQEYKERLQYELQVIKGMKFSDYFLIVWDFMYYARNAG 326 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I GPGRGS AGS+ AY+L ITD+DP+ LLFERFLNP+R++MPD DIDF ++RDEVI Sbjct: 327 ILTGPGRGSAAGSLVAYSLFITDVDPIEHDLLFERFLNPERITMPDIDIDFQDNKRDEVI 386 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 RYV KYG VAQIITFG+L AKAA RDV +AL + +++ + K+IP+ P + Sbjct: 387 RYVAEKYGQLHVAQIITFGTLAAKAAWRDVAKALNLSGKELEMISKMIPSRPGITLDAA- 445 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 ++ + + A R + +QK+EGL RH+STHAAG+VI +PL++L+P+ + Sbjct: 446 YQENEKLQSAINETKERKRAFQTAQKIEGLPRHSSTHAAGVVITHKPLTELIPIQ-AGQQ 504 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611 D+ +TQ+ M+ +E+ GL+K DFLGL+ LT++Q S+ +R K + IP DD T+ L Sbjct: 505 DIYLTQYTMETLEELGLLKMDFLGLRNLTMIQ-SIRHQVKRETKQHIEEIPLDDAATFRL 563 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L+ T GIFQLES GM++ L ++P +EDI+A+ +LYRPGP++ I ++ RK+G +K+ Sbjct: 564 LSEGDTSGIFQLESPGMKKVLTKLKPSNLEDIVAVNALYRPGPMEQIPLFIERKHGLKKV 623 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 HP + P+L++T GVI+YQEQ+MQIA +++G+SL EAD+LRRA+GKK K+ + K++E Sbjct: 624 EYPHPDLIPILEKTFGVIVYQEQIMQIAAVMAGFSLGEADLLRRAVGKKKKDVLAKEREH 683 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ G K G + +A ++++L+ +FADYGFN+SHA AY++ISY+ A++K +YP F+A Sbjct: 684 FVEGCLKKGYDEKVANSVYDLIVRFADYGFNRSHAVAYSMISYELAYLKANYPKIFMATL 743 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 ++ M + +K+ ++ + ++ IQ++PPS+N + F+V + I +SL IKGVG + Sbjct: 744 LSSVMGSEQKLSQYITETKRKGIQVLPPSINKSGIAFQVEEAGIRFSLLTIKGVGVQAIK 803 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 ++E K F L DFC+R S K+NR+ +E L+F G++D F R LL +LD ++ Sbjct: 804 ALIEERRKKEFSDLFDFCNRA-SSKVNRKTIEMLIFGGSMDEFEEDRATLLATLDVAMQH 862 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 A+ V + + F E+ F+ K K + + + E+ LGFY S HP + + Sbjct: 863 AELVM-PSDDNQIDFFMEEE--FNIKPKYVKVEPLQLTEQLQLEKEALGFYLSKHPTEPF 919 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + G + +T R+ + + +++ +T+KG + ++T S+ + + EA Sbjct: 920 AAYFQLGGGCLILDLPSTGA-RKARVGSFISNERVIRTKKGDLMAFLTLSDQSGDLEAVA 978 Query: 1032 FP 1033 FP Sbjct: 979 FP 980 >gi|157964927|ref|YP_001499751.1| DNA polymerase III subunit alpha [Rickettsia massiliae MTU5] gi|157844703|gb|ABV85204.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5] Length = 1181 Score = 635 bits (1638), Expect = e-179, Method: Composition-based stats. Identities = 405/1081 (37%), Positives = 601/1081 (55%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ +A++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + D K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + +R A G + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+SYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I P++N F V Sbjct: 765 VLSYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVRPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + YA Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYAT 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 SYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVSLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|77459371|ref|YP_348878.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf0-1] gi|123604378|sp|Q3KBG7|DNAE2_PSEPF RecName: Full=Error-prone DNA polymerase gi|77383374|gb|ABA74887.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf0-1] Length = 1025 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 291/1032 (28%), Positives = 468/1032 (45%), Gaps = 76/1032 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + + A+AITD L + Q A + + I Sbjct: 5 YAELHCLSNFSFQRGASSALELFQRAKKHGYQALAITDECTLAGIVRAWQAAKSVELPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ I+ P +VLLV EGYQ L L+++ Q K + Sbjct: 65 IGSEIRIENG----------------PKLVLLVENIEGYQALCGLITQARRRTQ-KGQYQ 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I E GL++L + A E+ K+ FG+RL++ +Q HR Sbjct: 108 ILREDFSEPLP-GLLVL------WVPEAV-----DEVEE-GRWLKQTFGERLWLAVQLHR 154 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D+ R + ++ LA ++P VA+ + + D + A+ H V++ R+ Sbjct: 155 GQNDQQRLAALLSLADELQIPAVASGDVHMHARGRRALQDTMTAIRHHVPVAEAGL-RLH 213 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+ RS V L+ ++++ARRC+F L P+ + E + + Sbjct: 214 PNGERHLRSLDVLRELYPQTLLDESLKLARRCTFDLGELRYQYPKELVPE----EHSASS 269 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR+ G+ R +GA +++D EL +IA + + YFL V D +++A++ Sbjct: 270 WLRHLTEQGIAWRWPKGA------QPKVLKQIDDELELIAELGYESYFLTVHDVVRFARE 323 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A S +AL IT+IDP R +LLFERF++ +R PD D+DF +RR+E Sbjct: 324 QKIL-CQGRGSAANSAVCFALGITEIDPDRTTLLFERFMSRERNEPPDIDVDFEHERREE 382 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V++YV +YG R A + A A+RDV +AL +P Q++ L + + Sbjct: 383 VLQYVFRRYGRRRAALTAVVSTYHASGAIRDVAKALGLPPDQINALADCCGHWSDETPPV 442 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + + + P + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 443 ERLRE----GGFDPESPLLHRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAA 498 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608 +D + Q++ ++ GL+K D L L L+ +++ D R + L+ IP +D T Sbjct: 499 MADRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHQDLSLATIPPEDRPT 558 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666 Y +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R+N Sbjct: 559 YDMISRADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRRN 618 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725 +E+ P ++ +LK T GV ++QEQVMQIA + + YS EAD LRR+M + Sbjct: 619 KEEEETYPSPELEVVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRRSMAAWKRHGGL 678 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + KER +G KNG S A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 679 EPHKERLAAGMKKNGYSPEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPA 738 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840 F A + + QDAR+ ++QI P V D + I L Sbjct: 739 AFACALINSWPMGFYSPDQILQDARRHHLQIRPVDVRASDWDCSLEPIAGEQPAIRMGLR 798 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 IKG AR I +A A F + D R L+ R L AGAL R + Sbjct: 799 MIKGFREEDARSIEKARARGAFADVADLGERA---GLDSRAQALLADAGALRGLAGHRHR 855 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +QK +FA + L + S + LG Sbjct: 856 ARWEVAGVQK------------QLGLFAGLPSQEEPDVLLP---TPSVSEDLFTDYATLG 900 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL + + LR + + + G + +A +V +Q+ T G + +VT Sbjct: 901 TTLGPHPLTLLRNELRARRCRSSRDLLEVEHGRPVSVAGLVTGRQRPGTASG--VTFVTL 958 Query: 1021 SEPAKEYEANFF 1032 + + Sbjct: 959 EDEFGNVNVVVW 970 >gi|288553705|ref|YP_003425640.1| DNA polymerase III subunit alpha [Bacillus pseudofirmus OF4] gi|288544865|gb|ADC48748.1| DNA polymerase III alpha subunit [Bacillus pseudofirmus OF4] Length = 1117 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 356/1029 (34%), Positives = 568/1029 (55%), Gaps = 43/1029 (4%) Query: 14 LQ--VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 L V+S YSLL + ++ K A+A+TD N+F+A+ F + GI+P+I Sbjct: 4 LHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPVI 63 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++ I ++ S+ LL GY+ L+++ + + D + Sbjct: 64 GLEIPIKDNEHSG-------------SLRLLAKNTTGYKSLLKISTLLQTEDNL--RAGL 108 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR 190 L+ + LI++ P+ + + A++ + + + Y++L + Sbjct: 109 APDDLRSRINDCLIII--PYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDLAGNA 166 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + + V Q A + L L +N F S+E+YEA+ + A+ + +D Sbjct: 167 DRESHHWEAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQDEGHAER 226 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 YLK++ E+ FS +P AL EI +C+ + + R++ + + Sbjct: 227 SFYLKSKEELKQSFSPVPAALSGLGEIVEQCNITIDL----DRRYLPAYPFTKSEPAKEV 282 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 L+ + G R + R+RL+ EL VI +M F+ YFLIVADF+Q A+K Sbjct: 283 LKKACLEGANKRFNH------TITDEVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKR 336 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 N+ GPGRGS AGS+TAY L ITD++PL++ LLFERFLNP+R+S+PD DIDF RRDEV Sbjct: 337 NMMTGPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEV 396 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I+YVQ KYG + VAQI TFG+L A+AA+RD G+AL ++++ KLIP+ P + Sbjct: 397 IQYVQEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKA 456 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + + ++ R ++LL I++ +EGL RH STHAAG+VI PL++LV + + Sbjct: 457 -MEQERGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVALQKGQG 515 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609 M +E GL+KFDFLGL+ LTLL++ L + Q +VD+ IP+DD +TY Sbjct: 516 PVRLTQA-TMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRRVDIHSIPWDDVKTY 574 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T G+FQLES GMR+ L + P EDI+A+ +LYRPGP+D I VY N K+ K Sbjct: 575 ELLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMDYIQVYINGKHKKA 634 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 I IH + P+L +T GVI+YQEQ+MQIA ++G+SL+ AD+LRRA+ KK K +++K + Sbjct: 635 PINDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKNKADLEKSR 694 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 F+ GA + G ++ IA +F+L+ +FA+YGFN+SHA AY++ISYQ A++K H+P F Sbjct: 695 GDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYT 754 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847 A ++ + EK+ + Q+ ++ I IMPPS++ + F + D+ + + L + VG Sbjct: 755 ALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGV 814 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 A+HI++ + + P+ L D+C RV+ + +NRR E+L+ AGA+D +G R LL +LD Sbjct: 815 QAAKHIIDTAREAPYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRATLLYNLDQ 874 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 +A+ V + ++ +F + + E + + EQ LG Y SGHP Sbjct: 875 AYSFAEKVLSFQ-DEMAGLFTLD----IETPQYEHVDPLSLQEKLSFEQEALGVYVSGHP 929 Query: 968 LDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 ++ +L K + + +G +R+A MV S ++ T+KG + ++ ++ + Sbjct: 930 IEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGDPMAFLEAADES 989 Query: 1025 KEYEANFFP 1033 E FP Sbjct: 990 GHCEVVVFP 998 >gi|45644755|gb|AAS73143.1| predicted DNA polymerase III, alpha subunit [uncultured marine gamma proteobacterium EBAC20E09] Length = 1148 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 356/1029 (34%), Positives = 592/1029 (57%), Gaps = 31/1029 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HL+V S +S+ +G L+++ I++ + P++A+TD +N+F ++F K + GI+PI Sbjct: 5 FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + I+ L T G++ L++++S + + Sbjct: 65 SGVTIRTIFD-----------GDDKSYEILCLAKTNIGHKNLMKIISNAHNSNSFN-VPI 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L + + +++++GG I N+ + A K++ F++ FGD + +QR Sbjct: 113 IKFDDLISL-KDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTN 171 Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D ++ ++Y +PL+ATN+ LF S++DY+ H+ + + ++ +R + Sbjct: 172 RSDELEYFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLF 231 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + Y K+ EM +F+D ++NT EI+++C+ L LP + + D + Sbjct: 232 SDQQYFKSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDF----D 287 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + ++ + L ++ A +Y+ RL++EL+ I +M FS YFLIV DFI+W+K Sbjct: 288 SFIKKLSSDRLNTLISGLAKD---KQDEYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSK 344 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N++PVGPGRGSGAGS+ AYAL IT +DP++ LLFERFLNP+R+SMPDFD+DFC ++RD Sbjct: 345 NNDVPVGPGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRD 404 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 VI YV KYG E V+QI TFG++ A+A +RDV RAL P+ DR+ K+IP P + Sbjct: 405 LVIDYVSQKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLD 464 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + F E + V +++++ KLEG+ R+ HA G+VI +S P+Y D Sbjct: 465 QAK-KEQPLFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVD 523 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDD 605 SD +TQ++ +EK GL+KFDFLGL+TLT++ +++ + + K+DL+ IP DD Sbjct: 524 RSSDSIMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNKLDLNKIPLDD 583 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 + L++ T +FQLESSGMR ++ ++P E+I AL++LYRPGP++ + + Sbjct: 584 KNVFKFLSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVD 643 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G + H L++P+L+ET GVI+YQEQVM+ A++L+G+SL +AD+LRRAMGKK KE Sbjct: 644 RKHGNSPVTYPHKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKE 703 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 EM++Q+E F++G +KN IS + A +IF L+ +FA+YGFNKSH+AAYA+ISYQTA++KT+Y Sbjct: 704 EMEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYY 763 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842 P F+A+ ++ E+ N +KI Q+ + NI+++ P++ F V + I Y L AI Sbjct: 764 PEYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAI 823 Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902 KGV ++ H+ E A +L DF ++D K ++ LE+L ++GA D +R + Sbjct: 824 KGVASSFIDHVCEKRASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAI 883 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 + + ++ + K ++FA + F + + + E E++ LG+Y Sbjct: 884 ECVKDMVRDGANRSAKNNLKSGDLFAQVEEDFDPYEKFKDLPKLKLTEKLEFEKKSLGYY 943 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP+ + ++ + ++ L ++ + +Q K RKG + +V FS+ Sbjct: 944 LSGHPVLAIENKIKNLRTLAIQQVTN--DTQKASLVCLINNVRQIKDRKGQPLIFVNFSD 1001 Query: 1023 PAKEYEANF 1031 + Sbjct: 1002 GTGSMDGII 1010 >gi|269959021|ref|YP_003328810.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel] gi|269848852|gb|ACZ49496.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel] Length = 1127 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 460/1033 (44%), Positives = 649/1033 (62%), Gaps = 49/1033 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + +++++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIDSLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC + + + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGCNIMVHD------------AGEDLGNILMLTKSREGFANLISLVSNGFRENQSGKANR 113 Query: 131 ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + +S L G + ++ RA S + + FG Sbjct: 114 VNVSDLLRQGSGLLLLTGGHDDILA----------RALLRKS--AGLGAINAVLEAFGSD 161 Query: 182 LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +YV LQRH + E ++ AY +PLVATN+ F +D++AHDVL ++ T + Sbjct: 162 VYVELQRHGLESQKEVEGLLISFAYERNVPLVATNDVFFARRDDFQAHDVLSCISDGTYI 221 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q+ R R+T +HY K EM +F+D+PEA+ NT IARRCSFI ++ P LP F + Sbjct: 222 VQEGRRRLTEEHYFKTSKEMFELFADIPEAVRNTPMIARRCSFIAEIRKPSLPHFPCSDG 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E EL A GLE RL I Y RL +EL V+ M +SGYFLIV Sbjct: 282 ----RTEAEELTECAKTGLEARLRTKNID-EDRRAKYHDRLQYELGVVISMDYSGYFLIV 336 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI Sbjct: 337 ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ++RD VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP Sbjct: 397 DFCQEKRDRVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 DP PV+ +AI D + + +D +V +LLEIS KLEGLYRHAS HAAGIVI D+PL Sbjct: 455 LDPVSPVTLSEAIEMDQNLKREQESDHTVAKLLEISLKLEGLYRHASVHAAGIVICDKPL 514 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 VP+Y D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RG+ ++LS Sbjct: 515 EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGISIELS 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI Sbjct: 575 ELPLDDSKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 +Y RK+G E IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGK Sbjct: 635 IYIARKHGLESPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGSADLLRRAMGK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMDKQ++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++ Sbjct: 695 KIKEEMDKQRQNFVNGAVKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y EF ASM L++ + +K++ CQ A+ ++++PP VN+ V F + + I Y L Sbjct: 755 KANYTKEFFTASMNLDIGDKDKLELLCQQAKACGVRVLPPDVNSSGVLFTISGDAIKYGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R Sbjct: 815 GALKNVGQTAAREVVPE-AGKQYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL +SL I + +K N+F +G L + + + +E L Sbjct: 874 QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIAHEFSTL 928 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY HPL Y+ +LR +GI+ E ++ + A + S + ++ R V Sbjct: 929 GFYLRYHPLAKYEGVLRGLGIRFVSECQNSVESGIKKSAGTISSV-RIRSANKERFAVVR 987 Query: 1020 FSEPAKEYEANFF 1032 S+P + F+ Sbjct: 988 ISDPYGVNDVAFY 1000 >gi|56416564|ref|YP_153638.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St. Maries] gi|56387796|gb|AAV86383.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St. Maries] Length = 1127 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 462/1033 (44%), Positives = 652/1033 (63%), Gaps = 49/1033 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC + + + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGCNIMVHD------------AGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113 Query: 131 ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + ++ L G + ++ RA + + FG+ Sbjct: 114 VDVNSLLRQGSGLLLLTGGHDDILA----------RALL--GKSAGMGAINAILETFGND 161 Query: 182 LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +YV LQRH + E ++ AY +PLVATN+ F+ D++AHDVL ++ T + Sbjct: 162 VYVELQRHGLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYI 221 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q+ R R+T +HY K EM +FSD+PEA+ NT IARRC+FI ++ P LP F + Sbjct: 222 VQEGRRRLTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPCSDG 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E EL A GLE RL I G + Y RL +EL ++ M +SGYFLIV Sbjct: 282 ----RTEAEELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIV 336 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI Sbjct: 337 ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ++RD+VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP Sbjct: 397 DFCQEKRDKVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +DP PV+ +AI D + + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL Sbjct: 455 HDPVSPVTLSEAIEMDQNLKREKESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPL 514 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 VP+Y D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RG ++LS Sbjct: 515 EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGGSIELS 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI Sbjct: 575 ELPLDDGKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 +Y RK+G EK IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGK Sbjct: 635 IYIARKHGLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMDKQ++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++ Sbjct: 695 KIKEEMDKQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y EF ASM L++ + +K++ CQ AR +Q++PP VN+ V F + + I Y L Sbjct: 755 KANYTKEFFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R Sbjct: 815 GALKNVGQTAAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL +SL I + +K N+F +G L + + + E+E L Sbjct: 874 QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIEHEFSTL 928 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY HPL Y+ ILR +G+K E + + A ++ S + ++ R V Sbjct: 929 GFYLRYHPLAKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVR 987 Query: 1020 FSEPAKEYEANFF 1032 S+P + F+ Sbjct: 988 ISDPYGVNDVAFY 1000 >gi|312140803|ref|YP_004008139.1| DNA polymerase iii alpha subunit dnae2 [Rhodococcus equi 103S] gi|311890142|emb|CBH49460.1| DNA polymerase III alpha subunit DnaE2 [Rhodococcus equi 103S] Length = 1093 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 284/1032 (27%), Positives = 476/1032 (46%), Gaps = 61/1032 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + ++ + F++ A G++ + Sbjct: 59 YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 118 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D T + TP P +++L EGY+RL ++ +L K R Sbjct: 119 FGAELSLD------ATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 172 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + A AE L FG DR+ V L Sbjct: 173 YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTHR 232 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D + + ++A +LP++A+ + F + AV + + Sbjct: 233 GLPEDDEINAALAEIATRQQLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDEAAGWLA 292 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +L++ +EM +F+ PEA+ + C+F L++ AP LP F + E Sbjct: 293 PTGGAHLRSGAEMARLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HTE 348 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R + +AQ ++ EL++I R+ F GYFL+V D + + Sbjct: 349 ASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSFC 403 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+I GRGS A S YA+ IT++DP+R LLFERFL+P+R PD D+D DRR Sbjct: 404 KDNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 462 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V KYG E AQ+ + + K+++RD+ RAL Q D K + Sbjct: 463 EEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVGQ 522 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 523 E--------------TDTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 568 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + V Q++ GL+KFD LGL L+ L +D +A+ ++VDL+ + + Sbjct: 569 ARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEQ 628 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 629 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 688 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E +V HP ++ L T GV ++QEQ+MQ+A +G+S +EAD LRRAM K+ E Sbjct: 689 RNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSPE 748 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ + R G + +GI+ +A I+E L FA++GF +SH+ ++A + + ++W K H Sbjct: 749 KMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKLH 808 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F A + + + DAR+ +++ VN + + L Sbjct: 809 HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGLG 868 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++G+G A I+ A A D PF S+ D R+D L +ESL AGAL CFG SR Sbjct: 869 EVRGIGDALAERIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSRR 925 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + + + T + + + Sbjct: 926 EALW----------AAGAAAGERPDRLPGMGASTRA-----PALPGMSDLELAAADVWAT 970 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P + +P L +G+ + G+ + + V +Q+ T G + +V Sbjct: 971 GVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFVN 1028 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1029 LEDETGMVNVVC 1040 >gi|222474932|ref|YP_002563347.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Florida] gi|255002906|ref|ZP_05277870.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Puerto Rico] gi|222419068|gb|ACM49091.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str. Florida] Length = 1127 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 463/1033 (44%), Positives = 652/1033 (63%), Gaps = 49/1033 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL+ HS YSLLEG + + +++ PA+A+TD+ NLF +LEFS A + G+QPI Sbjct: 6 FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC + + + +I++L + EG+ LI LVS + +Q ++ R Sbjct: 66 VGCNIMVHD------------AGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113 Query: 131 ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 + ++ L G + ++ RA + + FG+ Sbjct: 114 VDVNSLLRQGSGLLLLTGGHDDILA----------RALL--GKSAGMGAINAILETFGND 161 Query: 182 LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +YV LQRH + E ++ AY +PLVATN+ F+ D++AHDVL ++ T + Sbjct: 162 VYVELQRHGLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYI 221 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 Q+ R R+T +HY K EM +FSD+PEA+ NT IARRC+FI ++ P LP F Sbjct: 222 VQEGRRRLTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPCSGG 281 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + E EL A GLE RL I G + Y RL +EL ++ M +SGYFLIV Sbjct: 282 ----RTEAEELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIV 336 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI Sbjct: 337 ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ++RD+VI YV+ KYG VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP Sbjct: 397 DFCQEKRDKVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454 Query: 481 NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 +DP PV+ +AI D + + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL Sbjct: 455 HDPVSPVTLSEAIEMDQNLKREQESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPL 514 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 VP+Y D LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L + + RGV ++LS Sbjct: 515 EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGVSIELS 574 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 +P DD +TY +L+T ++G+FQLES+GMR+A+ ++PD I+DIIAL+SLYRPGP++NI Sbjct: 575 ELPLDDGKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 +Y RK+G EK IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL AD+LRRAMGK Sbjct: 635 IYIARKHGLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGK 694 Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 KIKEEMDKQ++ F++GA KNGI + A IF+L+AKFA YGFNKSHAAAYA+IS+QTA++ Sbjct: 695 KIKEEMDKQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839 K +Y EF ASM L++ + +K++ CQ AR +Q++PP VN+ V F + + I Y L Sbjct: 755 KANYTKEFFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGL 814 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A+K VG T AR ++ A K + + DF + +K +RV+ESL+ +GALD +R Sbjct: 815 GALKNVGQTAAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 QL +SL I + +K N+F +G L + + + E+E L Sbjct: 874 QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIEHEFSTL 928 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GFY HPL Y+ ILR +G+K E + + A ++ S + ++ R V Sbjct: 929 GFYLRYHPLAKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVR 987 Query: 1020 FSEPAKEYEANFF 1032 S+P + F+ Sbjct: 988 ISDPYGVNDVAFY 1000 >gi|254822689|ref|ZP_05227690.1| error-prone DNA polymerase [Mycobacterium intracellulare ATCC 13950] Length = 1095 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 281/1039 (27%), Positives = 482/1039 (46%), Gaps = 62/1039 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +S + L HS++S L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 57 ARSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAEL 116 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++ + G +L + + + P P P +++L EGY+RL ++ +L Sbjct: 117 DMRTVFGAELSL------GGEARTERPDPAGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 170 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 K R L E +LTG G + +A AE+ L FG + V Sbjct: 171 KGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAERALADLVDRFGAQSVSV 230 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L H D R + + LA + +VAT + F + A+ + Sbjct: 231 ELTHHGQPLDDERNAVLAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSA 290 Query: 244 DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +L++ +EM +F+ P+ + E+ +C+F L + AP LP F + Sbjct: 291 AGWLAPLGGSHLRSGAEMARLFAGGPDVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 348 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E++ LR +AG G +A +++ EL VIA+++F GYFL+V D Sbjct: 349 --HTEDSWLRQLTMAGAR-------DRYGPNAPRAYAQIEHELKVIAQLQFPGYFLVVHD 399 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 ++ + NNI GRGS A S YAL +T +DP+ LLFERFL+P R PD D+D Sbjct: 400 IARFCRDNNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDI 458 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D+R++VI+YV +KYG + AQ+ + + K A+RD+ RAL Q D K I + Sbjct: 459 ESDQREKVIQYVYDKYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISHW 518 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +AD + +++++ ++ L RH H+ G+VI DRP++ + Sbjct: 519 GG-------LADSPEVEDIPEP------VIDLANQIRNLPRHMGIHSGGMVICDRPIADV 565 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VDL+ + Sbjct: 566 CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARL 625 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 626 DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVH 685 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 Y R+NG++ +V HP ++P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM Sbjct: 686 PYIRRRNGEDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGS 745 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+ E M + + RF G +G + +E L FA++GF +SHA ++A + + ++ Sbjct: 746 KRSTERMRRLRGRFYEGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSS 805 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRI 835 W K H+P F AA + + + DAR+ + + P VN + + Sbjct: 806 WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENTGTEV 865 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L A++ +G A ++E + PF SL D SR+ +L+ E+L AGA CF Sbjct: 866 RLGLGAVRHIGDDLAEQLVEERKANGPFASLLDVTSRL---QLSVPQTEALATAGAFACF 922 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G SR + L + T + + + + + Sbjct: 923 GMSRREGLWAAGAA----------ATQRPGRLPGVGSSS-----HVPALPGMSELELAAA 967 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + G +P + L MG+ E+ + G+ + +A V +Q+ T +G Sbjct: 968 DVWATGISPDSYPTQFLREDLDAMGVVPAEKLGSVPDGDRVLIAGAVTHRQRPGTAQG-- 1025 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++ + P Sbjct: 1026 VTFLNLEDETGMVNVLCAP 1044 >gi|167033740|ref|YP_001668971.1| error-prone DNA polymerase [Pseudomonas putida GB-1] gi|166860228|gb|ABY98635.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1] Length = 1026 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 282/1036 (27%), Positives = 452/1036 (43%), Gaps = 76/1036 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S + + + A+AITD L + Q A A Sbjct: 2 NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHQ 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ I+G ++ + P +VLLV GYQ L L++R + K Sbjct: 62 LRLIVGSEVQLHDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 ++ LQ+ +GL+ L V + + +F +RL++ + Sbjct: 105 GEYQLFRDDLQQ-HHQGLLALWVADDS------------VDKATGEWLRSVFAERLWLAV 151 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 HRG D R ++ LA + VA + D + A+ V++ R Sbjct: 152 HLHRGCDDAMRLQRLQALAADVGVRAVACGDVHMHVRGRRALQDCMTAIRQHCQVNEAGR 211 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + RS+ L T+ IA+RC F L P + E Sbjct: 212 FLF-ANGERHLRSQAQLGELYPANLLAETLTIAQRCQFDLSELKYQYPCELVPEG----H 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR+ GL +R G ++ R L EL +I + + YFL V D + Sbjct: 267 TPASWLRDLCEQGLPLRWPNG------PSEKVRDVLAKELALIEELGYESYFLTVHDIVA 320 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ I GRGS A SV + L IT++DP+ LLFERFL+ +R PD D+DF D Sbjct: 321 FARSQRIL-CQGRGSAANSVVCFVLGITELDPMEHHLLFERFLSRERNEPPDIDVDFEHD 379 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YV +YG R A + A A+RDV R L +P QVD L K Sbjct: 380 RREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDR 439 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 Q +A+ PS+ R+L ++ +L G RH S H G VI +PL QLVP+ Sbjct: 440 IPDEQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPV 495 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFD 604 + V Q++ ++ GL+K D L L L+ L++ D RG ++ L+ IP + Sbjct: 496 ENAAMAQRTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRQLTLATIPSE 555 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 556 DPATYAMISRAETMGVFQIESRAQMAMLPRLRPTTFYDLVIEVAIVRPGPIQGDMVHPYL 615 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R+ +E + + + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 616 RRRLKQEPVTYPSAQLKAVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKR 675 Query: 723 EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + +ER + G +NG A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 676 HGGLEPHRERLVQGMLRNGYELAFAQRIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836 H P F A + + Q+AR+ I++ P V D + + I Sbjct: 736 HEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDEHGTLAIR 795 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L ++G+ AR + +A A +P+ +ED C R L+ R L AGAL Sbjct: 796 MGLRLVRGLAEADARRLQQARAQRPWRDVEDLCLRA---GLDSRARARLADAGALRALAS 852 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R Q + + +FA + + L + Sbjct: 853 DRHQARWQVAAV------------QPQLPLFADVQALPEVAVALP---APTVDEDLVADY 897 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + LG HPL + + LR +G + E G+ I +A +VV +Q+ +T G + Sbjct: 898 QTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDTIAVAGLVVGRQRPQTASG--VT 955 Query: 1017 WVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 956 FVTLEDEHGMVNVVVW 971 >gi|91204889|ref|YP_537244.1| DNA polymerase III subunit alpha [Rickettsia bellii RML369-C] gi|122426107|sp|Q1RKF9|DPO3A_RICBR RecName: Full=DNA polymerase III subunit alpha gi|91068433|gb|ABE04155.1| DNA polymerase III alpha chain [Rickettsia bellii RML369-C] Length = 1172 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 412/1069 (38%), Positives = 605/1069 (56%), Gaps = 69/1069 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ SSYS L AL+ I++ ++ + AI +TD NLF +LEF+ A G+QPI Sbjct: 5 FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+I + + I+L+ GY+ L++L S + + K Sbjct: 65 HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E EGLI L + G I + N + AE +++FGDR Y + RH Sbjct: 113 ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171 Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E +++A +PLVATN LF + ++AHDVL+ ++ DR V+ Sbjct: 172 LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y K+ EM+ +F+DLP A+ENTV + +RC F A + E + Sbjct: 232 ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYF-----AAHTNPPMLPNFATKDISETD 286 Query: 310 ELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +R +A G + +Y RLD+ELN+I M F+GYFLIV+D Sbjct: 287 LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF Sbjct: 347 FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 407 CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466 Query: 483 PAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532 +PV+ QAI + A + + +L+ S LEGL+RH+STHAAGI Sbjct: 467 AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L ++ Sbjct: 527 VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +++D + + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LYRP Sbjct: 587 NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L AD+ Sbjct: 647 GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKKIK EM++Q+E F+ GA N IS+ A +IF +AKFA YGFNK+HAAAY VI Sbjct: 707 LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVI 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831 SYQTA++K +YP EF+ A + LE++N +KI F Q+A+ NI+I+ P++N F V Sbjct: 767 SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826 Query: 832 -------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 D+ I ++L AIKGV + + + A F S+ Sbjct: 827 VIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ + + + + Sbjct: 887 VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + K + K L + + E +G + S HPL YK I ++ I + Sbjct: 947 L---IKVSSLSKEILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003 Query: 986 S-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ K + + +G R + S+P +E + F Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051 >gi|108798154|ref|YP_638351.1| error-prone DNA polymerase [Mycobacterium sp. MCS] gi|119867250|ref|YP_937202.1| error-prone DNA polymerase [Mycobacterium sp. KMS] gi|108768573|gb|ABG07295.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. MCS] gi|119693339|gb|ABL90412.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS] Length = 1099 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 281/1034 (27%), Positives = 479/1034 (46%), Gaps = 57/1034 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS+YS L+GA + ++++ A AIA+TD + L+ + F++ A ++ + Sbjct: 61 YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + M + + + P P P +++L EGY+RL +++ +L K R Sbjct: 121 FGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + +A AEK L FG DR+ V L H Sbjct: 178 YDYDTLTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247 D R + + +LA L +VAT + F + A+ ++ Sbjct: 238 GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +L++ EM +F+ P+ + ++ +C+F L + AP LP F E Sbjct: 298 PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HTE 353 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR+ + G R A Q Y +++ EL VI ++ F GYFL+V D ++ Sbjct: 354 DSWLRHLVMLGARNRYGPPERA----PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRFC 408 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I GRGS A S YAL +T++DP+ LLFERFL+P R PD DID D R Sbjct: 409 KENGIL-AQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDLR 467 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++ I+YV ++YG + AQ+ + + ++A+RD+ RAL Q D K + Sbjct: 468 EQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSKWNG--- 524 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AD +++++ ++ L RH H+ G+VI DRP++ + P+ Sbjct: 525 ----LADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVEW 574 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606 ++ V Q++ GL+KFD LGL L+ L +D + + VDL+ + + Sbjct: 575 ARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSEP 634 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 635 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIKR 694 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E + HP + L++T GV ++QEQ+MQ+A +G++ +EAD LRRAM K+ E Sbjct: 695 RNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRSTE 754 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M + + RF G + +GI+ +A I++ L FA++GF +SH+ ++A + + ++W K H Sbjct: 755 KMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKLH 814 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F AA + + + DAR+ + + P VN + + L Sbjct: 815 HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGLG 874 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A++ +G A I+E + PF+SL D RV +L+ E+L AGAL CFG +R Sbjct: 875 AVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVTRR 931 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + A +R + + + + Sbjct: 932 EGLWA----AGAAAAERPDRLPGVGS-----------AGQVPSLPGMSKLELAAADVWAT 976 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P + L MG+ + G + +A V +Q+ T +G + ++ Sbjct: 977 GVSPDSYPTQFLRENLDAMGVVPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFLN 1034 Query: 1020 FSEPAKEYEANFFP 1033 + P Sbjct: 1035 LEDETGMVNVVCSP 1048 >gi|325675561|ref|ZP_08155245.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707] gi|325553532|gb|EGD23210.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707] Length = 1115 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 285/1032 (27%), Positives = 477/1032 (46%), Gaps = 61/1032 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + ++ + F++ A G++ + Sbjct: 81 YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 140 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D T + TP P +++L EGY+RL ++ +L K R Sbjct: 141 FGAELSLD------ATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 194 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + A AE L FG DR+ V L Sbjct: 195 YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTHR 254 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D + + ++A +LP++A+ + F + AV + + Sbjct: 255 GLPEDDEINAALAEIATRQQLPVIASTAAHFAGPHRRRLAMAMAAVRARQSLDEAAGWLA 314 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +L++ +EMV +F+ PEA+ + C+F L++ AP LP F + E Sbjct: 315 PTGGAHLRSGAEMVRLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HTE 370 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R + +AQ ++ EL++I R+ F GYFL+V D + + Sbjct: 371 ASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSFC 425 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+I GRGS A S YA+ IT++DP+R LLFERFL+P+R PD D+D DRR Sbjct: 426 KGNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 484 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V KYG E AQ+ + + K+++RD+ RAL Q D K + Sbjct: 485 EEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVGQ 544 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 545 E--------------TDTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 590 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + V Q++ GL+KFD LGL L+ L +D +A+ ++VDL+ + + Sbjct: 591 ARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEQ 650 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 651 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 710 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E +V HP ++ L T GV ++QEQ+MQ+A +G+S +EAD LRRAM K+ E Sbjct: 711 RNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSPE 770 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ + R G + +GI+ +A I+E L FA++GF +SH+ ++A + + ++W K H Sbjct: 771 KMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKLH 830 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F A + + + DAR+ +++ VN + + L Sbjct: 831 HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGLG 890 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++G+G A I+ A A D PF S+ D R+D L +ESL AGAL CFG SR Sbjct: 891 EVRGIGDALADRIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSRR 947 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + + + T + + + Sbjct: 948 EALW----------AAGAAAGERPDRLPGMGASTRA-----PALPGMSDLELAAADVWAT 992 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P + +P L +G+ + G+ + + V +Q+ T G + +V Sbjct: 993 GVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFVN 1050 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1051 LEDETGMVNVVC 1062 >gi|297529096|ref|YP_003670371.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297252348|gb|ADI25794.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1092 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 385/1025 (37%), Positives = 574/1025 (56%), Gaps = 51/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 2 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + +VLL + EGY+ L+E+ + M + + + Sbjct: 62 IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L + + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 106 MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 E+ ++QLA +P+VATN+ ++ D A L A+ +++ Sbjct: 165 QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 221 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 YL EM F+DLPEALEN++ IA +C ++ LP + + + ++ Sbjct: 222 GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR + GL R+ + Y +RL EL+VI + FS YFLIVAD + +A++ Sbjct: 278 LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF RR+EV Sbjct: 331 GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ + + Sbjct: 391 IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 450 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 451 H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609 + P+TQ+ M +E GL+K DFLGL+TLTL+++ + Q G D+ +P +D +TY Sbjct: 509 GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T GIFQLESSGM++ L ++P ED++A+ +LYRPGP+ I VY RK G+E Sbjct: 569 ALLGAGDTNGIFQLESSGMKRILAELRPSEFEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + IHP + P+L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K + KQ+ Sbjct: 629 PVEYIHPDLAPILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQR 688 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F++G + NG K IA +++ +A+FADYGFN+SHA +YA++SY A+MK HYP+ F A Sbjct: 689 QAFVAGCAANGYPKEIAEELYQHIARFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 +T + EK + +A + I ++ PSVN V + I LA +K VG + Sbjct: 749 VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 807 Query: 850 ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I+E + PF DF +R+ K L R LE+L+ GA D FG R LL S+D Sbjct: 808 AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++AQWV+ A E G S K S R E LGF + HP Sbjct: 868 IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V +P+L+ G + G + + VV ++ +T++G + + T + + E E Sbjct: 917 AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972 Query: 1029 ANFFP 1033 A FP Sbjct: 973 AVAFP 977 >gi|126433813|ref|YP_001069504.1| error-prone DNA polymerase [Mycobacterium sp. JLS] gi|126233613|gb|ABN97013.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. JLS] Length = 1099 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 281/1034 (27%), Positives = 479/1034 (46%), Gaps = 57/1034 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS+YS L+GA + ++++ A AIA+TD + L+ + F++ A ++ + Sbjct: 61 YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + M + + + P P P +++L EGY+RL +++ +L K R Sbjct: 121 FGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + +A AEK L FG DR+ V L H Sbjct: 178 YDYDALTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247 D R + + +LA L +VAT + F + A+ ++ Sbjct: 238 GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +L++ EM +F+ P+ + ++ +C+F L + AP LP F E Sbjct: 298 PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HTE 353 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR+ + G R A Q Y +++ EL VI ++ F GYFL+V D ++ Sbjct: 354 DSWLRHLVMLGARNRYGPPERA----PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRFC 408 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K+N I GRGS A S YAL +T++DP+ LLFERFL+P R PD DID D R Sbjct: 409 KENGIL-AQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDLR 467 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++ I+YV ++YG + AQ+ + + ++A+RD+ RAL Q D K + Sbjct: 468 EQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSKWNG--- 524 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +AD +++++ ++ L RH H+ G+VI DRP++ + P+ Sbjct: 525 ----LADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVEW 574 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606 ++ V Q++ GL+KFD LGL L+ L +D + + VDL+ + + Sbjct: 575 ARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSEP 634 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 635 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIKR 694 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E + HP + L++T GV ++QEQ+MQ+A +G++ +EAD LRRAM K+ E Sbjct: 695 RNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRSTE 754 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M + + RF G + +GI+ +A I++ L FA++GF +SH+ ++A + + ++W K H Sbjct: 755 KMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKLH 814 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F AA + + + DAR+ + + P VN + + L Sbjct: 815 HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGLG 874 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 A++ +G A I+E + PF+SL D RV +L+ E+L AGAL CFG +R Sbjct: 875 AVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVTRR 931 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + A +R + + + + Sbjct: 932 EGLWA----AGAAAAERPDRLPGVGS-----------AGQVPSLPGMSKLELAAADVWAT 976 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P + L MG+ + G + +A V +Q+ T +G + ++ Sbjct: 977 GVSPDSYPTQFLRENLDAMGVIPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFLN 1034 Query: 1020 FSEPAKEYEANFFP 1033 + P Sbjct: 1035 LEDETGMVNVVCSP 1048 >gi|157827786|ref|YP_001496850.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389] gi|157803090|gb|ABV79813.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389] Length = 1172 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 412/1069 (38%), Positives = 605/1069 (56%), Gaps = 69/1069 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F+HL+ SSYS L AL+ I++ ++ + AI +TD NLF +LEF+ A G+QPI Sbjct: 5 FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G L+I + + I+L+ GY+ L++L S + + K Sbjct: 65 HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L+E EGLI L + G I + N + AE +++FGDR Y + RH Sbjct: 113 ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171 Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + E +++A +PLVATN LF + ++AHDVL+ ++ DR V+ Sbjct: 172 LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y K+ EM+ +F+DLP A+ENTV + +RC F A + E + Sbjct: 232 ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYF-----AAHTNPPMLPNFATKDISETD 286 Query: 310 ELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 +R +A G + +Y RLD+ELN+I M F+GYFLIV+D Sbjct: 287 LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 FI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF Sbjct: 347 FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 407 CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466 Query: 483 PAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532 +PV+ QAI + A + + +L+ S LEGL+RH+STHAAGI Sbjct: 467 AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592 VI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L ++ Sbjct: 527 VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586 Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 +++D + + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LYRP Sbjct: 587 NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646 Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712 GP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L AD+ Sbjct: 647 GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706 Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 LRRAMGKKIK EM++Q+E F+ GA N IS+ A +IF +AKFA YGFNK+HAAAY VI Sbjct: 707 LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFVTVAKFAGYGFNKAHAAAYGVI 766 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831 SYQTA++K +YP EF+ A + LE++N +KI F Q+A+ NI+I+ P++N F V Sbjct: 767 SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826 Query: 832 -------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865 D+ I ++L AIKGV + + + A F S+ Sbjct: 827 VIPQLDRSIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886 Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925 DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ + + + + Sbjct: 887 VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 + K + K L + + E +G + S HPL YK I ++ I + Sbjct: 947 L---IKVSSLSKEILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003 Query: 986 S-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A ++ K + + +G R + S+P +E + F Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051 >gi|307571155|emb|CAR84334.1| dnaE [Listeria monocytogenes L99] Length = 1095 Score = 632 bits (1629), Expect = e-178, Method: Composition-based stats. Identities = 355/1017 (34%), Positives = 565/1017 (55%), Gaps = 41/1017 (4%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L S++ ++ K PA+AITD N L+ +EF QK AA I+PIIG + I Sbjct: 1 MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIGMTVTI---- 56 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 QG ++L+ + GY L+++ S + ++G + SWL+ + Sbjct: 57 ------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PELPQSWLRAYSS 107 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200 LI ++ G+ G I+R + A + +FG + +Y++ Q+ +++ Sbjct: 108 -NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKENP---RLFAKI 163 Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260 + +P+VAT N +L +D +A +VL A+ + V P P+++ Sbjct: 164 ETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAGPNYFTSQEEME 223 Query: 261 VSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319 +D +A T E+A RC + + +LPRF E + + LR A GL Sbjct: 224 RDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QNAPDVLRQTAYDGL 279 Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379 + R GA +Y++RL++EL VI M F+ YFLIV D I+++++ + GPGRG Sbjct: 280 KERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGRG 331 Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439 S AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRDEVI YV +KYG Sbjct: 332 SAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKYG 391 Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499 VAQI TFG+L AKAA+RD R+ + + KLIP+ + +A+ + R Sbjct: 392 EAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL-QKALQESPRLE 450 Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559 + + + E++ +LEGL RH STHAAGIVI D+PL + V + D +TQF Sbjct: 451 NHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLGS-GDARLTQFA 509 Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618 M +EK GL+K DFLGL+ L+LL + L R + L+ I +D +T L T T Sbjct: 510 MGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKKTLKLFQTGDTT 569 Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678 G+FQ ES G+R+ L ++P ED++A+ +LYRPGP++ I + RK+GKEKI HP + Sbjct: 570 GVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHGKEKIQYPHPDL 629 Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738 P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++++ F+ GA Sbjct: 630 APILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKS 689 Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798 G S A +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P F+++ ++ N Sbjct: 690 KGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGN 749 Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857 +KI ++ +A+ + I ++ PS+N F+V + I YS I+ V T I+ Sbjct: 750 DDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINER 809 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 PF DFC R+ K L+ VLE+LVF+G D FG R +L ++D + +Y + + Sbjct: 810 KKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGE 869 Query: 918 NRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + +K N+FA + K K + + + E E+ G Y S HP+ Y+ L+ Sbjct: 870 D--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQ 927 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + I + G N ++AA V + +T+KG + ++T S+ +KE A FP Sbjct: 928 NLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 981 >gi|218893372|ref|YP_002442241.1| error-prone DNA polymerase [Pseudomonas aeruginosa LESB58] gi|218773600|emb|CAW29414.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa LESB58] Length = 1031 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 281/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +L + ++ L S++S GA S + + A A+AITD +L + Q Sbjct: 1 MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +Q IIG ++ ++ P +VLL EGYQ L L++R Sbjct: 61 AAREHQVQLIIGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K R+ LQ+ L + G ++ ++ F Sbjct: 105 -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RL++ ++ HRG D R +++ LA LP VA + + D + A+ + Sbjct: 150 RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS+ P+ R+ L T++IA RC F L+ PR + Sbjct: 210 VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + LR+ G+ R GA A R++++ EL +IA + + YFL Sbjct: 269 GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D Sbjct: 319 VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF +RR+EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 378 VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 S + + + P + R+L ++ +L G RH S H G VI ++PL Sbjct: 438 GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+ ++ V Q++ ++ GL+K D L L L+ L++S D + LS Sbjct: 494 DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDILALGMLSALRRSFDLIHALRGGKRLS 553 Query: 600 LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 554 IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR Sbjct: 614 DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673 Query: 716 AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M + + +ER G G A IFE + F YGF +SHAA++A+++Y Sbjct: 674 SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P F A + + QDAR+ +Q P V D + Sbjct: 734 ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I L I+G AR I + +PF + D R +L+ R LE L AG Sbjct: 794 QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + ++ ++ +FA ++L + + Sbjct: 851 ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 ++ +LG HPL + + L+ + E G IR+A +VV +Q+ +T Sbjct: 896 EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 G I ++T + Sbjct: 956 ASG--ITFITLEDEFGMVNVVV 975 >gi|254244906|ref|ZP_04938228.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192] gi|126198284|gb|EAZ62347.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192] Length = 1031 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 281/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +L + ++ L S++S GA S + + A A+AITD +L + Q Sbjct: 1 MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +Q IIG ++ ++ P +VLL EGYQ L L++R Sbjct: 61 AAREHQVQLIIGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K R+ LQ+ L + G ++ ++ F Sbjct: 105 -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RL++ ++ HRG D R +++ LA LP VA + + D + A+ + Sbjct: 150 RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS+ P+ R+ L T++IA RC F L+ PR + Sbjct: 210 VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + LR+ G+ R GA A R++++ EL +IA + + YFL Sbjct: 269 GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D Sbjct: 319 VQDIVAFARGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF +RR+EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 378 VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 S + + + P + R+L ++ +L G RH S H G VI ++PL Sbjct: 438 GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+ ++ V Q++ ++ GL+K D L L L+ L++S D + LS Sbjct: 494 DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553 Query: 600 LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 554 IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR Sbjct: 614 DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673 Query: 716 AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M + + +ER G G A IFE + F YGF +SHAA++A+++Y Sbjct: 674 SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P F A + + QDAR+ +Q P V D + Sbjct: 734 ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I L I+G AR I + +PF + D R +L+ R LE L AG Sbjct: 794 QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + ++ ++ +FA ++L + + Sbjct: 851 ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 ++ +LG HPL + + L+ + E G IR+A +VV +Q+ +T Sbjct: 896 EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 G I ++T + Sbjct: 956 ASG--ITFITLEDEFGMVNVVV 975 >gi|238650797|ref|YP_002916652.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic] gi|238624895|gb|ACR47601.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic] Length = 1181 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 405/1081 (37%), Positives = 608/1081 (56%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLKQALHEVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|116048576|ref|YP_792625.1| error-prone DNA polymerase [Pseudomonas aeruginosa UCBPP-PA14] gi|115583797|gb|ABJ09812.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 1031 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 280/1042 (26%), Positives = 459/1042 (44%), Gaps = 78/1042 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +L + ++ L S++S GA S + + A A+AITD +L + Q Sbjct: 1 MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +Q I+G ++ ++ P +VLL EGYQ L L++R Sbjct: 61 AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K R+ LQ+ +G + + ++ ++ F Sbjct: 105 -RQADKGHYRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQAAWLRERFPQ 149 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RL++ ++ HRG D R +++ LA LP VA + + D + A+ + Sbjct: 150 RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS+ P+ R+ L T++IA RC F L+ PR + Sbjct: 210 VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + LR+ G+ R GA A R++++ EL +IA + + YFL Sbjct: 269 GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D Sbjct: 319 VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF +RR+EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 378 VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 S + + + P + R+L ++ +L G RH S H G VI ++PL Sbjct: 438 GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPL 493 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+ ++ V Q++ ++ GL+K D L L L+ L++S D + LS Sbjct: 494 DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553 Query: 600 LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 554 IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR Sbjct: 614 DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673 Query: 716 AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M + + +ER G NG A IFE + F YGF +SHAA++A+++Y Sbjct: 674 SMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P F A + + QDAR+ +Q P V D + Sbjct: 734 ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFG 793 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I L I+G AR I + +PF + D R +L+ R LE L AG Sbjct: 794 QAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + ++ ++ +FA ++L + + Sbjct: 851 ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRG 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 ++ +LG HPL + + L+ + E G IR+A +VV +Q+ +T Sbjct: 896 EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 G I ++T + Sbjct: 956 ASG--ITFITLEDEFGMVNVVV 975 >gi|146282691|ref|YP_001172844.1| error-prone DNA polymerase [Pseudomonas stutzeri A1501] gi|145570896|gb|ABP80002.1| DNA polymerase III, alpha subunit, putative [Pseudomonas stutzeri A1501] Length = 1065 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 280/1034 (27%), Positives = 449/1034 (43%), Gaps = 79/1034 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + ++ A+AITD +L + Q + G+ I Sbjct: 44 YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 103 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ I+ P +VLLV GYQ L +L++R + K + Sbjct: 104 IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 146 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L E EGL+ A + A+ + F +RL++ ++ HR Sbjct: 147 ALREDLSEGSLEGLL------------AIWLPGHAGADTDGRWLLERFRERLWLGIELHR 194 Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D Q + A +P VA + + D + A+ H V++ Sbjct: 195 GPDDALQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLF- 253 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+ RS L T+ I++RC F L P + D + Sbjct: 254 PNGERHLRSREELAQLYPAALLSETLRISQRCHFQLDQLKYHYPHELVPPGHDTT----S 309 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G R G + R +++ EL +IA + + YFL V D +++A++ Sbjct: 310 WLRKLVEDGARWRWPDG------IPEKARAQIEHELELIADLHYESYFLTVHDIVRFARE 363 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A S + L IT++DP+R LLFERFL+ +R PD D+DF DRR+E Sbjct: 364 RGIL-CQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREE 422 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV +YG R A S +A ALRDV +AL +P Q++ L Sbjct: 423 VIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWS------ 476 Query: 490 QAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + I DDSR RE +P + R+L ++ L G RH S H G VI ++PL LVP+ Sbjct: 477 EHIPDDSRLREAGFDPDNPILRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIEN 536 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 +D V Q++ ++ GL+K D L L L+ +++ D + RG + ++ +P +D Sbjct: 537 ASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAEDK 596 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 597 PTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 656 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +N +E++ + P+ + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 657 RNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRHG 716 Query: 725 M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + R G IFE + F YGF +SHAA++A+++Y + W+K H Sbjct: 717 SLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRHE 776 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYS 838 P F A + + QDAR+ ++I P V D + I Sbjct: 777 PAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRLG 836 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L ++G A+ I A +PF + D C R + L R E L AGAL R Sbjct: 837 LRMVRGFREADAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADAGALRGLAGHR 893 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + ++ I +FA I L + + N+ Sbjct: 894 HRARWAVAGI------------EPQLPLFASLPAPEETSINLP---LPSVGEDLFNDYAT 938 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG HPL + + L+ + E G + +A +V+ +Q+ +T G + +V Sbjct: 939 LGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIFV 996 Query: 1019 TFSEPAKEYEANFF 1032 T + + Sbjct: 997 TLEDEFGMVNVVVW 1010 >gi|327480947|gb|AEA84257.1| error-prone DNA polymerase [Pseudomonas stutzeri DSM 4166] Length = 1026 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 282/1034 (27%), Positives = 451/1034 (43%), Gaps = 79/1034 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + ++ A+AITD +L + Q + G+ I Sbjct: 5 YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ I+ P +VLLV GYQ L +L++R + K + Sbjct: 65 IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 L E EGL+ A + A+ + F +RL++ ++ HR Sbjct: 108 ALREDLSEGSLEGLL------------AIWLPGHAGADTDGRWLLERFRERLWLGIELHR 155 Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D + Q + A +P VA + + D + A+ H V++ Sbjct: 156 GPDDTLQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLF- 214 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+ RS L T+ I++RC F L P + D + Sbjct: 215 PNGERHLRSREELAQLYPAALLSETLRISQRCHFQLDQLKYHYPHELVPPGHD----STS 270 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G R G + R +L+ EL +IA + + YFL V D +++A++ Sbjct: 271 WLRKLVEDGARWRWPDG------IPEKARAQLEHELELIADLHYESYFLTVHDIVRFARE 324 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A S + L IT++DP+R LLFERFL+ +R PD D+DF DRR+E Sbjct: 325 RGIL-CQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREE 383 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV +YG R A S +A ALRDV +AL +P Q++ L Sbjct: 384 VIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWS------ 437 Query: 490 QAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + I DDSR RE +P + R+L ++ L G RH S H G VI ++PL LVP+ Sbjct: 438 EHIPDDSRLREAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIEN 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 +D V Q++ ++ GL+K D L L L+ +++ D + RG + ++ +P +D Sbjct: 498 ASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAEDK 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 PTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +N +E++ + P+ + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 618 RNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRHG 677 Query: 725 M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + R G IFE + F YGF +SHAA++A+++Y + W+K H Sbjct: 678 SLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRHE 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYS 838 P F A + + QDAR+ ++I P V D + I Sbjct: 738 PAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRLG 797 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L ++G T A+ I A +PF + D C R + L R E L AGAL R Sbjct: 798 LRMVRGFRETDAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADAGALRGLAGHR 854 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + ++ I +FA I L + + N+ Sbjct: 855 HRARWAVAGI------------EPQLPLFASLPAPEETSINLP---LPSVGEDLFNDYAT 899 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG HPL + + L+ + E G + +A +V+ +Q+ +T G + +V Sbjct: 900 LGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIFV 957 Query: 1019 TFSEPAKEYEANFF 1032 T + + Sbjct: 958 TLEDEFGMVNVVVW 971 >gi|308154503|ref|NP_249360.3| DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1] gi|71151832|sp|Q9I5Q2|DNAE2_PSEAE RecName: Full=Error-prone DNA polymerase gi|9946548|gb|AAG04058.1|AE004502_1 probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1] Length = 1031 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 280/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +L + ++ L S++S GA S + + A A+AITD +L + Q Sbjct: 1 MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +Q I+G ++ ++ P +VLL EGYQ L L++R Sbjct: 61 AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K R+ LQ+ L + G ++ ++ F Sbjct: 105 -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RL++ ++ HRG D R +++ LA LP VA + + D + A+ + Sbjct: 150 RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS+ P+ R+ L T++IA RC F L+ PR + Sbjct: 210 VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + LR+ G+ R GA A R++++ EL +IA + + YFL Sbjct: 269 GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D Sbjct: 319 VQDIVAFARGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF +RR+EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 378 VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 S + + + P + R+L ++ +L G RH S H G VI ++PL Sbjct: 438 GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+ ++ V Q++ ++ GL+K D L L L+ L++S D + LS Sbjct: 494 DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553 Query: 600 LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 554 IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR Sbjct: 614 DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673 Query: 716 AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M + + +ER G G A IFE + F YGF +SHAA++A+++Y Sbjct: 674 SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P F A + + QDAR+ +Q P V D + Sbjct: 734 ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I L I+G AR I + +PF + D R +L+ R LE L AG Sbjct: 794 QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + ++ ++ +FA ++L + + Sbjct: 851 ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 ++ +LG HPL + + L+ + E G IR+A +VV +Q+ +T Sbjct: 896 EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 G I ++T + Sbjct: 956 ASG--ITFITLEDEFGMVNVVV 975 >gi|238029059|ref|YP_002913284.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1] gi|237880636|gb|ACR32964.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1] Length = 1049 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 289/1037 (27%), Positives = 466/1037 (44%), Gaps = 63/1037 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQ S++S L GA ++++ A AIAITD +L + +A AAG+ Sbjct: 10 PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L EGY L EL++ K + Sbjct: 70 LIIGSHFQLTSADGSPALA-----------FTALAMNREGYGNLCELITLARTRGA-KGT 117 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L+ E L L + I F + Q + ++ F +FGDR V L Sbjct: 118 YRLAPLDLEHPEAPLTHLRGLPDCMT--ILTPDFPANEQRLDAQIEWFAAVFGDRARVAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V + A + +P+VAT+ + DVL A+ V ++ Sbjct: 176 TLHARAMDDIHRGAVERAAARYGVPVVATSWPVMHVRSRKPLQDVLTAIRLGRSV-RECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV +ARRC+F L P + Sbjct: 235 YELAPNAERHLRSRLRLSNLYPAGALEETVRVARRCTFSLDELRYEYPDELVPAG----Y 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + G R G + +++ EL +IA++K+ YFL V D ++ Sbjct: 291 SPASYLREQTYIGAHARFPGGIPFH------VQAQIEHELQLIAKLKYEPYFLTVYDIVR 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ NI GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 345 FARSQNIL-CQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISCERNEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ KYG +R A + + + ALR+ G+AL + VDR+ K + Sbjct: 404 RREEVMQYIYAKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSK 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L A+ + P + + L G RH S H+ G VI LS++VP+ Sbjct: 464 ADLLARFAE----AGLDVEAPLNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPI 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 +D + Q++ IE G++K D L L L++++++L+ + +RG +L IP + Sbjct: 520 ENAAMADRTIIQWDKDDIEALGILKVDILALGMLSMVRRALEMISEKRGEPFELQDIPPE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L ++G+FQ+ES L +QP C D++ V++ RPGP+ +V+ Sbjct: 580 DAATYAMLCEGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFL 639 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + P ++ LK T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ R + G G + A IF + F DYGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHARLVEGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLAA + + + QDAR+ +++I+P V D + + + Sbjct: 760 HEPGVFLAALLNSQPMGFYTPSQLLQDARRRSVRILPVDVTISTWDSTLEGDTTAAPVRV 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896 ++ IKG+ A I A + +PF + D R L+R L+ L AGAL G Sbjct: 820 GMSLIKGMRAEAAARIELARSVRPFADVADLARRA---ALDRHDLQVLAAAGALRSLAGG 876 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R L + + + E+ + + ++ Sbjct: 877 NRRDALW-----------LAAAAVPGRDLLRGTERDDAA-----PALPQASEGRELVSDY 920 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R +GF HPL++ + LR + E G R +V +Q+ T KG + Sbjct: 921 RSMGFTLGRHPLELLRARLRTDRLLPAAELAQLRNGQFARACGIVTVRQRPGTAKG--VL 978 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + + +P Sbjct: 979 FITLEDETGQTNVIIWP 995 >gi|330808697|ref|YP_004353159.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376805|gb|AEA68155.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1025 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 291/1032 (28%), Positives = 455/1032 (44%), Gaps = 76/1032 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + + + A+AITD L + Q A +Q I Sbjct: 5 YAELHCLSNFSFQRGASSALELCRRARQEGYQALAITDECTLAGIVRAWQAAKELELQLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ P +VLLV EGYQ L L++R + K R Sbjct: 65 VGSEIQVENG----------------PKLVLLVENLEGYQALCRLITRARRRSE-KGHYR 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189 I + + GL+ L AE+ + +F RL++ +Q H Sbjct: 108 IVREDFDQPLS-GLLALW----------IAEGK--DAEEHGRWLQSIFAGRLWLTVQLHC 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 DR R + + LA +LP+VA+ + D + A+ H V++ + Sbjct: 155 GQDDRRRLADSLALAERLDLPVVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQRLHP 214 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + RS L+ T+ IARRC+F L PR + E D + Sbjct: 215 NGEH-HLRSRKDLADLYPRALLDETLNIARRCTFDLGQLRYQYPRELVPEGHD----PAS 269 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G+ R GA R ++D EL++IA + + YFL V D + +A+ Sbjct: 270 WLRELTERGMRERWKDGA------TDKVRAQIDKELSLIAELGYDSYFLTVQDIVSFARS 323 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 +I GRGS A S YAL IT+IDP SLLFERFL+ +R PD D+DF DRR+E Sbjct: 324 RHIL-CQGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFEHDRREE 382 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V++YV +YG R A S A+RDV +AL +P QV+ L + Sbjct: 383 VLQYVFQRYGRHRAALTAVVSSYHGAGAVRDVAKALGLPPDQVNALADCCGRWSDEAPPV 442 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + + R P + R+L ++++L G RH S H G VI ++PL LVP+ Sbjct: 443 ERL----REGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAA 498 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 ++ + Q++ ++ GL+K D L L L+ +++ D + RG + L+ +P +D T Sbjct: 499 MAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLIEHYRGQRYALASLPQNDRAT 558 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666 Y +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R+N Sbjct: 559 YEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGGMVHPYLRRRN 618 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725 +E + + +L T GV ++QEQVMQIA + + Y+ EAD LRR+M + Sbjct: 619 KEEAVTYPSEALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHGGL 678 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + +ER G KNG + A IFE + F +YGF +SHAA++A+++Y ++W+K H P Sbjct: 679 EPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWLKCHEPA 738 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLA 840 F A + + QDAR+ + I P V D + I L Sbjct: 739 AFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMEGRQPAIRMGLR 798 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +KG AR I A +PF + D R +L+ R L L AGAL R + Sbjct: 799 MVKGFREEDARRIEAARRHRPFSDVADLGERA---QLDARALAQLADAGALQGLAGDRHR 855 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 + +QK +FA + L K + LG Sbjct: 856 ARWEVAGVQK------------QLGLFAGLPSQEEPPVALPK---PTLGENLFADYTTLG 900 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL + +P LR + E G N+ +A +V +Q+ T G + +VT Sbjct: 901 TTLGPHPLALLRPELRARRCRSSRELQDVEHGRNVSVAGLVTGRQRPGTASG--VTFVTL 958 Query: 1021 SEPAKEYEANFF 1032 + + Sbjct: 959 EDEFGNLNVVVW 970 >gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase III subunit epsilon [Candidatus Sulcia muelleri SMDSEM] gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia muelleri SMDSEM] Length = 1406 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 323/1071 (30%), Positives = 546/1071 (50%), Gaps = 67/1071 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------A 64 F H+ H+ +S+L + +N+++ K + A+ ITD N+ K Sbjct: 228 FSHIHNHTYFSILSSTIDINSLIKKTIEYEMDAVGITDYGNMMGVFNLINKIKTINESEK 287 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 I+PIIGC+L I DN + K + VL+ GY L +L S+ ++ Sbjct: 288 KKIKPIIGCELFIS--DNYLIKKFTKKNPDKIYHQVLVAKNKNGYDNLSKLCSKGFIDGY 345 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 RI + +++ E LI ++G + I + AEK + LF D Y+ Sbjct: 346 YSGIPRIGKNLVEKY-KENLIAISGDLNSEIPLTLLNKGEKEAEKVFKWWHNLFKDDFYI 404 Query: 185 NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + RH + ++ +++ A +++ +A NN+ +L ++D AHD+L+ V + S Sbjct: 405 EILRHGLEEEDHVNKILIKFAKKYKVKFIAQNNNFYLEKKDANAHDILLCVKNCQKQSIP 464 Query: 244 -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-------LQVHA 289 + Y K + +M ++FSD+PEA +N E+ + L Sbjct: 465 IGKGKGFRFGFPNKEFYFKKKLQMYNLFSDIPEAFDNLKELIEKVEVYEISNPILLPKFE 524 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 + + E L+ G + + + +++++FEL I Sbjct: 525 IPKKWRKKDCKSNDIHYENEYLKYLTYKGAKK-------KFDHLNEQIKKKIEFELETIK 577 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ + GYFLIV D I AKK + VGPGRGS AGSV AY + IT IDP++++LLFERFLN Sbjct: 578 KIGYPGYFLIVQDLILQAKKIGVEVGPGRGSVAGSVVAYCIGITKIDPIKYNLLFERFLN 637 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+S+PD DIDF R+++I++V NKYG + VAQIIT+G + AK+++RD R L + Sbjct: 638 PDRVSLPDIDIDFDDKGREKIIQWVVNKYGKDNVAQIITYGKMGAKSSIRDTARVLNLSL 697 Query: 470 SQVDRLCKL-IPNDPAHPVSLQAIADDSRF-------------REARLADPSVDRLLEIS 515 + D++ K+ N + + I D + + + + + L+ + Sbjct: 698 EETDKMAKMVPTNFSLKEIITKDIKDLKKILKFEELKNVITLKKIFKEKNTLQAKTLKQA 757 Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575 +EG R+ HA GI+I + + +P+ + S+L +TQF+ + +EK GL+K D LG Sbjct: 758 MGIEGSVRNTGIHACGIIITPSDIKKYIPVAKTKDSNLLLTQFDNEVVEKMGLLKMDLLG 817 Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 LKTLT+++++L + R + L IP DD +TY L T+ +FQ ES GM++ L+ + Sbjct: 818 LKTLTIMKETLFLIKNRN--IKLENIPLDDEKTYELFKNGETVAVFQYESHGMQKYLKQL 875 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695 +PD +D+IA+ +LYRPGP+ I + RK+G+EKI P + LKET G+ +YQEQV Sbjct: 876 KPDKFDDLIAMNALYRPGPMQYIPNFIARKHGQEKISYDLPELKEFLKETYGITVYQEQV 935 Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 M I+Q +SG+S +AD+LR+A+GKK K + K++FI G KNG S I I++ Sbjct: 936 MLISQKISGFSKGDADLLRKAIGKKEKNLLSNMKKQFIDGGKKNGFSSQILEKIWKDWKS 995 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSH+ Y+ I+++TA++KTHYP E++A+ ++ M N++ I F ++ ++ + Sbjct: 996 FASYAFNKSHSTCYSYIAFKTAYLKTHYPAEYMASVLSNNMKNIKDISFFIEECKRIGVI 1055 Query: 816 IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 ++ P +N F V I + + AIKG+G + + I++ K ++S+ +VD Sbjct: 1056 VLGPDINESDYKFTVNKLGFIRFGIGAIKGIGEYSVKSILKERK-KKYNSILGLIKKVDL 1114 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNIQKYAQWVEKNRTNKHENIFA 928 + +N++VLE+LV +GA D F R Q ++ I K+ +K + N ++F Sbjct: 1115 RLVNKKVLENLVVSGAFDNFKIQRSQYFYEENGSNMIEKIIKFGVKYKKIKENIKNSLFK 1174 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-- 986 + K K + N + + E+ V+G Y + HPL+ YK ++ + E+ Sbjct: 1175 NIKDIEILKPNFKSCKNWNLFEKLKKEKEVIGMYLTYHPLNEYKYEIKHLTNATIEDLNF 1234 Query: 987 -VATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032 G I++ ++ K+ + + + E F Sbjct: 1235 NKEKFIGKQIKICGIIS-----KSLNLLKNNKNYIIFILEDYKSKKEFKLF 1280 >gi|221194701|ref|ZP_03567758.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626] gi|221185605|gb|EEE17995.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626] Length = 1276 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 328/1038 (31%), Positives = 523/1038 (50%), Gaps = 76/1038 (7%) Query: 61 KACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +A A I+PI GC+ D ++ + T ++LL GY L+++ Sbjct: 114 EAVKANKPHPLIKPIFGCEAYFITDDCIERGTK-----QTRYHLILLAKNETGYVNLMKM 168 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +S + R L L+ EG+I + SG I R+FF + AE+ L +K Sbjct: 169 MSEAASKEMFYFKPRTTLDMLRRYH-EGIICTSACVSGIIPRSFFAGQPEEAERWALIYK 227 Query: 176 KLFGDRLYVNLQRHRGYDRYRE--------SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 ++FGD Y+ +Q H D Q++ L + + +VATN++ +L+ ED Sbjct: 228 EIFGDDFYLEVQDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASV 287 Query: 228 HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 D+ + + + +R R++ + Y K EM IFS PE ++NT+E+A +C++ L Sbjct: 288 QDIASCIGTGSKFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELD 347 Query: 287 VHAPILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D+ + E R + GL R + + ++R ++E Sbjct: 348 -----WTHMYLPKFPDLAEGETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYE 402 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++I + F+ YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+F Sbjct: 403 YDIICKKGFADYFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMF 462 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFL+P R MPD D+DF +RR EV+ +V+ YG ERV+ +IT+ +++AK A+ D R Sbjct: 463 ERFLSPQRSEMPDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRV 522 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQ 516 L P Q RL K+I NDP +S + F EA + + +++ + Sbjct: 523 LDYPVYQGQRLSKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAAL 582 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EGL+R HA ++I P++ VP D + ++ +TQF + GL+K DFLGL Sbjct: 583 AIEGLHRGEGVHACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGL 642 Query: 577 KTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635 +TLT++ ++L + +++ IPF+D E Y L+ T G+FQ+ES+GM ++GM Sbjct: 643 RTLTVISRALKNIKANFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGM 702 Query: 636 QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693 +P + I+AL++LYRPGP+ +V Y +R NG+E+ V P + +L ET G ++YQE Sbjct: 703 RPTEFKHIVALIALYRPGPLGAGMVSSYIDRMNGREEPVDYDPRLHDILAETYGTMVYQE 762 Query: 694 QVMQIAQLLSGYSLSEADV------------LRRAMGKKIKEEMDKQKERFISGASKNGI 741 QVMQI+ +SG++ E+D ++ + + ++ + GA +NG Sbjct: 763 QVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGF 822 Query: 742 SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801 + A I+E + KFA Y FNKSH+A YA++ QTAW+K HYP E++AA +T M +K Sbjct: 823 KRETAEIIWEDVLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDK 882 Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860 I + RQ I++ P +N DF I + A I+GVG A IM Sbjct: 883 IVHYVSACRQEGIKVSQPDINESGRDFTATKEGIRFGFAGIRGVGAGVAEAIMAERQKGG 942 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWV 915 PF +L DF R+D+ + R V+E+L+ AGA D GY+RMQL++ +D + A Sbjct: 943 PFSNLRDFIDRMDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKR 1002 Query: 916 EKNRTNKHENIFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 ++++ + ++F E F++ + E VLG Y S HPL Y Sbjct: 1003 QRDKASGQISMFDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYVSDHPLTPY 1062 Query: 972 KPILRKMGIKGYEESVAT----------------IRGNNIRLAAMVVSKQQKKTRKGSRI 1015 L + AT G NIRL+ MV + Q++ T+ G + Sbjct: 1063 AYALSLARDYELVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKRITKNGDPM 1122 Query: 1016 GWVTFSEPAKEYEANFFP 1033 VT + E FP Sbjct: 1123 AIVTLEDMEGELSLVLFP 1140 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +FVHL HS +S+L+ A +N+++ + + PA+A+TD LF +F Sbjct: 2 AFVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDLACRKYN 58 >gi|15893134|ref|NP_360848.1| DNA polymerase III subunit alpha [Rickettsia conorii str. Malish 7] gi|81595527|sp|Q92GB2|DPO3A_RICCN RecName: Full=DNA polymerase III subunit alpha gi|15620342|gb|AAL03749.1| DNA polymerase III alpha chain [Rickettsia conorii str. Malish 7] Length = 1181 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 404/1081 (37%), Positives = 607/1081 (56%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y K+ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATENISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|296168813|ref|ZP_06850495.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896516|gb|EFG76163.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1080 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 278/1038 (26%), Positives = 481/1038 (46%), Gaps = 61/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S + L HS++S L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 42 SSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAELE 101 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + +TP P P +++L EGY+RL ++ +L K Sbjct: 102 LRTVFGAELSLGPG------ARTETPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R L E +LTG G + +A A + L FG DR+ + Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQG-PDAAGRALADLVDRFGADRVSIE 214 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 215 LTHHGQPPDDERNAALAGLAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARQSLDAAA 274 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ P+A+ ++ +C+F L + AP LP F Sbjct: 275 GWLAPLGGSHLRSGEEMARLFAWRPDAVTAAADLGEQCAFGLALIAPRLPPFDVPAG--- 331 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR + G G A +++ EL VIAR++F GYFL+V D Sbjct: 332 -HTEDSWLRQLTMTGAR-----GRYGTPDAAPRAFSQIEHELKVIARLQFPGYFLVVHDI 385 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++NNI GRGS A S YAL +T +DP+ LLFERFL+P R PD D+D Sbjct: 386 ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 444 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + + A+RD+ RAL Q D K + + Sbjct: 445 SDQREKVIQYVYDKYGRDYAAQVANVITYRGRIAVRDMARALGFSQGQQDAWSKQLGHWN 504 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +AD ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 505 G-------LADSPDVEGI------PPQVVDLANQIRNLPRHMGIHSGGMVICDRPIADVC 551 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L ++D +A+ ++VDL+ + Sbjct: 552 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 611 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 612 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRIFYDLVVEVALIRPGPIQGGSVHP 671 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + +V HP ++P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 672 YIRRRNGLDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 731 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + ++RF G +G + + +E L FA++GF +SHA ++A + + ++W Sbjct: 732 RSTERMRRLRDRFYDGMRALHGATDEVIDRAYEKLEAFANFGFPESHALSFASLVFYSSW 791 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + + Sbjct: 792 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 851 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ + PF SL D +R+ +L+ E+L AGA CFG Sbjct: 852 LGLGAVRHIGDDLAERLVAERKANGPFASLLDLTTRL---QLSVPQTEALATAGAFGCFG 908 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + L + A +R + + + + Sbjct: 909 MSRREGLWAAG----AAATQRPDRLPGVGS-----------SSHVPALPGMSELELAAAD 953 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ + + G+ + +A V +Q+ T +G + Sbjct: 954 VWATGVSPDSYPTQFLRADLDAMGVVPAGKLLDVPDGDRVLIAGAVTHRQRPGTAQG--V 1011 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1012 TFLNLEDETGMVNVLCTP 1029 >gi|254239049|ref|ZP_04932372.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719] gi|126170980|gb|EAZ56491.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719] Length = 1031 Score = 629 bits (1621), Expect = e-177, Method: Composition-based stats. Identities = 279/1042 (26%), Positives = 460/1042 (44%), Gaps = 78/1042 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + +L + ++ L S++S GA S + + A A+AITD +L + Q Sbjct: 1 MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +Q I+G ++ ++ P +VLL EGYQ L L++R Sbjct: 61 AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 K R+ LQ+ +G + + +++ ++ F Sbjct: 105 -RQADKGHYRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQVAWLRERFPQ 149 Query: 181 RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 RL++ ++ HRG D R +++ LA LP VA + + D + A+ + Sbjct: 150 RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 VS+ P+ R+ L T++IA RC F L+ PR + Sbjct: 210 VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + LR+ G+ R GA A R++++ EL +IA + + YFL Sbjct: 269 GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D Sbjct: 319 VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF +RR+EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 378 VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 S + + + P + R+L ++ +L G RH S H G VI ++PL Sbjct: 438 GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPL 493 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599 LVP+ ++ V Q++ ++ GL+K D L L L+ L++S D + LS Sbjct: 494 DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553 Query: 600 LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 + D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 554 IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR Sbjct: 614 DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673 Query: 716 AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M + + +ER G NG A IFE + F YGF +SHAA++A+++Y Sbjct: 674 SMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P F A + + QDAR+ +Q P V D + Sbjct: 734 ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 I L I+G AR I + +PF + D R +L+ R LE L AG Sbjct: 794 QAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAG 850 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + ++ ++ +FA ++L + + Sbjct: 851 ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRG 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 ++ +LG HPL + + L+ + E G IR+A +V+ +Q+ +T Sbjct: 896 EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVIGRQRPQT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031 G I ++T + Sbjct: 956 ASG--ITFITLEDEFGMLNVVV 975 >gi|157829043|ref|YP_001495285.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933767|ref|YP_001650556.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. Iowa] gi|157801524|gb|ABV76777.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908854|gb|ABY73150.1| DNA polymerase III alpha subunit [Rickettsia rickettsii str. Iowa] Length = 1181 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 405/1081 (37%), Positives = 608/1081 (56%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHINFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDATEGLLARLAAKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 QFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|34581196|ref|ZP_00142676.1| DNA polymerase III alpha chain [Rickettsia sibirica 246] gi|28262581|gb|EAA26085.1| DNA polymerase III alpha chain [Rickettsia sibirica 246] Length = 1181 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 404/1081 (37%), Positives = 607/1081 (56%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + + A +++ GDR Y + R Sbjct: 111 DHIGFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNIADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|261418242|ref|YP_003251924.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC61] gi|319767798|ref|YP_004133299.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261374699|gb|ACX77442.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317112664|gb|ADU95156.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1092 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 381/1025 (37%), Positives = 569/1025 (55%), Gaps = 51/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 2 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + +VLL + EGY+ L+E+ + M + + + Sbjct: 62 IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L + + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 106 MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 E+ ++QLA +P+VATN+ ++ D A L A+ +++ Sbjct: 165 QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 221 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 YL EM F+DLPEALEN++ IA +C ++ LP + + + ++ Sbjct: 222 GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR + GL R+ + Y +RL EL+VI + FS YFLIVAD + +A++ Sbjct: 278 LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF RR+EV Sbjct: 331 GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ + + Sbjct: 391 IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 450 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 451 H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609 + P+TQ+ M +E GL+K DFLGL+TLTL+++ + Q G D+ +P +D +TY Sbjct: 509 GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T GIFQLESSGM++ L ++P +ED++A+ +LYRPGP+ I VY RK G+E Sbjct: 569 ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + HP ++ +L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K + KQ Sbjct: 629 PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQH 688 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F++G NG K +A ++ + +FADYGFN+SHA +YA++SY A+MK HYP+ F A Sbjct: 689 QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 +T + EK + +A + I ++ PSVN V + I LA +K VG + Sbjct: 749 VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSFVEGSAIRLGLAMVKQVG-SA 807 Query: 850 ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I+E + PF DF R+ K L R LE+L+ GA D FG R LL S+D Sbjct: 808 AKLIVEERKANGPFADFFDFAVRLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++AQWV+ A E G S K S R E LGF + HP Sbjct: 868 IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V +P+L+ G + G + + VV ++ +T++G + + T + + E E Sbjct: 917 AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972 Query: 1029 ANFFP 1033 A FP Sbjct: 973 AVAFP 977 >gi|229587140|ref|YP_002845641.1| DNA polymerase III subunit alpha [Rickettsia africae ESF-5] gi|228022190|gb|ACP53898.1| DNA polymerase III alpha chain [Rickettsia africae ESF-5] Length = 1181 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 403/1081 (37%), Positives = 606/1081 (56%), Gaps = 79/1081 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + + A +++ GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEAKAMLFARKLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + ++ A GL RLA ++ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +++ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGL+KFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLVKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAA+Y Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP FL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854 I ++L AIKGV + + Sbjct: 825 KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884 Query: 855 EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913 + F S+ DF R+ K +N ++LE+L+ +G D +R+QLL S+ + Y+ Sbjct: 885 DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944 Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQA 1001 Query: 974 ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 I ++ I + G + LA ++ K + + +G R + S+P +E + Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060 Query: 1032 F 1032 F Sbjct: 1061 F 1061 >gi|148547815|ref|YP_001267917.1| error-prone DNA polymerase [Pseudomonas putida F1] gi|148511873|gb|ABQ78733.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1] Length = 1026 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 286/1037 (27%), Positives = 457/1037 (44%), Gaps = 78/1037 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S + + + A+AITD L + Q A Sbjct: 2 NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ I+G ++ + P +VLLV GYQ L L++R + K Sbjct: 62 LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104 Query: 127 QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + ++ L + +GL+ L SG + +F +RL++ Sbjct: 105 GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 150 Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + HRG D R ++ LA + VA + D + A+ VS+ Sbjct: 151 VHLHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 210 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + RS+ + L T+ IARRC F L PR + E Sbjct: 211 RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR G+ +R G + R L EL +I + + YFL V D + Sbjct: 266 HTPASWLRELCEQGMPLRWPGG------PSGKVRAVLAKELGLIEELGYESYFLTVHDIV 319 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF Sbjct: 320 AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVI+YV +YG R A + A A+RDV R L +P QVD L K Sbjct: 379 DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSD 438 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q +A+ PS+ R+L ++ +L G RH S H G VI +PL QLVP Sbjct: 439 RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 494 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPF 603 + + V Q++ ++ GL+K D L L L+ L++ D RG + L+ IP Sbjct: 495 VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATIPS 554 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 555 EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 614 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ +E + P + + + T GV ++QEQVM++A + + Y+ EAD LRR+M Sbjct: 615 LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 674 Query: 722 KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + +ER + G +NG + A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 675 RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 734 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835 H P F A + + Q+AR+ I++ P V D + + I Sbjct: 735 CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 794 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++G+ T AR + +A A +P+ ++ED C R L+ R L GAL Sbjct: 795 RMGLRLVRGLAETDARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 851 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + + +FA + + + L V + Sbjct: 852 SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 896 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG HPL + + LR +G + E G+NI +A +VV +Q+ +T G + Sbjct: 897 YQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 954 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 955 TFVTLEDEHGMVNVVVW 971 >gi|118464788|ref|YP_883471.1| error-prone DNA polymerase [Mycobacterium avium 104] gi|118166075|gb|ABK66972.1| DNA polymerase III, alpha subunit, putative [Mycobacterium avium 104] Length = 1093 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 278/1038 (26%), Positives = 480/1038 (46%), Gaps = 60/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S + L HS++S L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 54 SSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + + P P P +++L EGY+RL ++ +L K Sbjct: 114 VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R L L E +LTG G + +A A + L FG R+ + Sbjct: 168 GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSEGGPDEAARALADLVDRFGAARVSIE 227 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L RH D R + + LA + +VAT + F + A+ + Sbjct: 228 LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAA 287 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ +C+F L + AP LP F + Sbjct: 288 GWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR + G R HA +++ EL VIA+++F GYFL+V D Sbjct: 345 -HTEDSWLRQLTMTGARDRYG-----SPEHAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++NNI GRGS A S YAL +T +DP+ LLFERFL+P R PD D+D Sbjct: 399 ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV ++YG + AQ+ + + K A+RD+ RAL Q D K I + Sbjct: 458 SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISSWS 517 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +AD ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 518 G-------LADSPDVEGI------PPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VDL+ + Sbjct: 565 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 624 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 625 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP ++P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 685 YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + +E L FA++GF +SHA ++A + + ++W Sbjct: 745 RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + + Sbjct: 805 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A +++ + PF SL D +R+ +L+ E+L AGA CFG Sbjct: 865 LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARL---QLSVPQTEALATAGAFGCFG 921 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 922 MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ + G+ + +A V +Q+ T +G + Sbjct: 967 VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042 >gi|145225469|ref|YP_001136147.1| error-prone DNA polymerase [Mycobacterium gilvum PYR-GCK] gi|145217955|gb|ABP47359.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium gilvum PYR-GCK] Length = 1087 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 278/1036 (26%), Positives = 475/1036 (45%), Gaps = 60/1036 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +S + L HS+YS L+GA + ++++ + A+A+TD + L+ + F++ A Sbjct: 48 RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 107 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 + + G +L + + P P P +++L EGY+RL ++ +L K Sbjct: 108 VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 +R L E +LTG G + +A AE L FG +R+ V Sbjct: 162 GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 221 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQK 243 L H D R + + LA L ++AT + F + A+ +++ Sbjct: 222 LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 281 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PE + ++ +C+F L + AP LP F Sbjct: 282 GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 338 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + LR+ + G R A +AQ ++ EL VI ++ F GYFL+V D Sbjct: 339 -HTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 392 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++N I GRGS A S YAL +T++DP+ LLFERFL+P R PD DID Sbjct: 393 TRFCRENAILS-QGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 451 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D R++ I+YV +YG E AQ+ + + ++A+RD+ RAL Q D K I Sbjct: 452 SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 510 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + D +++++ ++ L RH H+ G+VI DRP++ + Sbjct: 511 GNLADATHVEDIPE------------PVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 558 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ +VDL+ + Sbjct: 559 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 618 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 619 LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVHP 678 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y R+NG+E + HP ++ L++T GV ++QEQ+MQ+A +G+S +EAD LRRAMG K Sbjct: 679 YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 738 Query: 721 IKEEMDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 E + + F A +GIS +A I+E L FA++GF +SH+ ++A + + ++W Sbjct: 739 RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 798 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIY 836 K H+P F AA + + + DAR+ + + P VN + ++ + Sbjct: 799 FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 858 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L +I+ +G A+ ++E + PF SL D RV +L E+L AGAL CFG Sbjct: 859 LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 915 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L + A +R + + + Sbjct: 916 ITRREGLWAAG----AAATERPDRLPGVGS-----------SSQVPSLPGMTELELTAAD 960 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + + L MG+ + ++ G + +A V +Q+ T +G + Sbjct: 961 VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1018 Query: 1016 GWVTFSEPAKEYEANF 1031 ++ + Sbjct: 1019 TFLNLEDETGMVNVLC 1034 >gi|315445823|ref|YP_004078702.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1] gi|315264126|gb|ADU00868.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1] Length = 1099 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 278/1036 (26%), Positives = 475/1036 (45%), Gaps = 60/1036 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +S + L HS+YS L+GA + ++++ + A+A+TD + L+ + F++ A Sbjct: 60 RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 119 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 + + G +L + + P P P +++L EGY+RL ++ +L K Sbjct: 120 VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 +R L E +LTG G + +A AE L FG +R+ V Sbjct: 174 GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 233 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQK 243 L H D R + + LA L ++AT + F + A+ +++ Sbjct: 234 LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 293 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PE + ++ +C+F L + AP LP F Sbjct: 294 GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 350 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E + LR+ + G R A +AQ ++ EL VI ++ F GYFL+V D Sbjct: 351 -HTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 404 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++N I GRGS A S YAL +T++DP+ LLFERFL+P R PD DID Sbjct: 405 TRFCRENAILS-QGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 463 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D R++ I+YV +YG E AQ+ + + ++A+RD+ RAL Q D K I Sbjct: 464 SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 522 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + D +++++ ++ L RH H+ G+VI DRP++ + Sbjct: 523 GNLADATHVEDIPE------------PVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 570 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ +VDL+ + Sbjct: 571 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 630 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 631 LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 690 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y R+NG+E + HP ++ L++T GV ++QEQ+MQ+A +G+S +EAD LRRAMG K Sbjct: 691 YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 750 Query: 721 IKEEMDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 E + + F A +GIS +A I+E L FA++GF +SH+ ++A + + ++W Sbjct: 751 RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 810 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIY 836 K H+P F AA + + + DAR+ + + P VN + ++ + Sbjct: 811 FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 870 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L +I+ +G A+ ++E + PF SL D RV +L E+L AGAL CFG Sbjct: 871 LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 927 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L + A +R + + + Sbjct: 928 ITRREGLWAAG----AAATERPDRLPGVGS-----------SSQVPSLPGMTELELTAAD 972 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + + L MG+ + ++ G + +A V +Q+ T +G + Sbjct: 973 VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1030 Query: 1016 GWVTFSEPAKEYEANF 1031 ++ + Sbjct: 1031 TFLNLEDETGMVNVLC 1046 >gi|56421279|ref|YP_148597.1| DNA-directed DNA polymerase III subunit alpha [Geobacillus kaustophilus HTA426] gi|56381121|dbj|BAD77029.1| DNA-directed DNA polymerase III alpha subunit [Geobacillus kaustophilus HTA426] Length = 1091 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 376/1025 (36%), Positives = 570/1025 (55%), Gaps = 51/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL V S YSL + A ++ + + A+A+TD N L+ A+ F ++ GI+PI Sbjct: 3 FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG D+ + +VLL + EGY+ L+E+ + M + + + Sbjct: 63 IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 106 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L + + G+I +T GS G ++ + A++ L + +LF RLYV +QR Sbjct: 107 MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 165 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 E+ ++QL +P+VATN+ ++ D A L A+ +++ Sbjct: 166 QTRAPYEAGLLQLVEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 222 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 YL EM F+DLPEALEN++ IA +C ++ LP + + + ++ Sbjct: 223 GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 278 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR + GL R+ + Y +RL EL+VI + FS YFLIVAD + +A++ Sbjct: 279 LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 331 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 I GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF DRR+EV Sbjct: 332 GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDDRREEV 391 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV +KYG +RVAQIITFG+ AKAALR+ +AL +P + +++ L+P+ + + Sbjct: 392 IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 451 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A+ + FR A A P L ++QKLEGL RH S HAAG++I PL + VP+ Sbjct: 452 H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 509 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609 + P+TQ+ M +E GL+K DFLGL+TLTL+++ + Q G D+ +P +D +TY Sbjct: 510 GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 569 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 LL T GIFQLESSGM++ L ++P +ED++A+ +LYRPGP+ I VY RK G+E Sbjct: 570 ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 629 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + HP ++ +L T GV+IYQEQ+MQIA L+G+SL +ADVLRRA+ KK K + +Q+ Sbjct: 630 PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAEQR 689 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 + F++G NG K +A ++ + +FADYGFN+SHA +YA++SY A+MK HYP+ F A Sbjct: 690 QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 749 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 +T + EK + +A + I ++ PSVN V + I LA +K VG + Sbjct: 750 VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 808 Query: 850 ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A+ I+E + PF DF +R+ K L R LE+L+ GA D FG R LL S+D Sbjct: 809 AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 868 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++AQWV+ + ++ K S R E LGF + HP Sbjct: 869 IEHAQWVQALQAGG-LSL----------KPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 917 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 V +P+L+ G + G + + VV ++ +T++G + + T + + E E Sbjct: 918 AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 973 Query: 1029 ANFFP 1033 A FP Sbjct: 974 AVAFP 978 >gi|313498875|gb|ADR60241.1| DnaE2 [Pseudomonas putida BIRD-1] Length = 1026 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 285/1035 (27%), Positives = 455/1035 (43%), Gaps = 78/1035 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S GA S + + + A+AITD L + Q A ++ Sbjct: 4 PGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLR 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ + P +VLLV GYQ L L++R + K + Sbjct: 64 LIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-KGA 106 Query: 129 VRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 ++ L + +GL+ L SG + +F +RL++ + Sbjct: 107 YQLFRDDLL-LHHQGLLALWVAADSGDTATGV-------------WLRSVFAERLWLAVH 152 Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 HRG D R ++ LA + VA + D + A+ VS+ R Sbjct: 153 LHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRF 212 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + RS+ + L T+ IARRC F L PR + E Sbjct: 213 LF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG----HT 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR G+ +R G + R L EL +I + + YFL V D + + Sbjct: 268 PASWLRELCEQGMPLRWPDG------PSGKVRAVLAKELGLIEELGYESYFLTVHDIVAF 321 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF DR Sbjct: 322 ARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDR 380 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV +YG R A + A A+RDV R L +P QVD L K Sbjct: 381 REEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDRI 440 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 Q +A+ PS+ R+L ++ +L G RH S H G VI +PL QLVP+ Sbjct: 441 PDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPVE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605 + V Q++ ++ GL+K D L L L+ L++ D RG + L+ IP +D Sbjct: 497 NAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATIPSED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 557 PATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ +E + P + + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 617 RRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKRH 676 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +ER + G +NG + A IFE + F YGF +SHAA++A++ Y ++W+K H Sbjct: 677 GGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKCH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837 P F A + + Q+AR+ I++ P V D + + I Sbjct: 737 EPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAQGTLAIRM 796 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L ++G+ AR + +A A +P+ ++ED C R L+ R L GAL Sbjct: 797 GLRLVRGLAEADARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRALASD 853 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R Q + + +FA + + + L V + + Sbjct: 854 RHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMADYQ 898 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 LG HPL + + LR +G + E G+NI +A +VV +Q+ +T G + + Sbjct: 899 TLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--VTF 956 Query: 1018 VTFSEPAKEYEANFF 1032 VT + + Sbjct: 957 VTLEDEHGMVNVVVW 971 >gi|257784701|ref|YP_003179918.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469] gi|257473208|gb|ACV51327.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469] Length = 1278 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 329/1040 (31%), Positives = 524/1040 (50%), Gaps = 78/1040 (7%) Query: 61 KACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 +A A I+PI GC+ + D ++ + ++LL GY L+++ Sbjct: 114 EAVKANKPSPLIKPIFGCEAYFILDDCIEKGTK-----QVRYHLILLAKNETGYVNLMKM 168 Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175 +S + R L L+ EG+I + SG I R F + AE+ ++ Sbjct: 169 MSEAGSKEMFYYKPRTTLEMLKRYH-EGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQ 227 Query: 176 KLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 +FGD Y+ +Q H D R ++V++ + + +VATN++ +L++ED Sbjct: 228 DIFGDDFYLEIQDHGLSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASV 287 Query: 228 HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286 D+ + V ++R R+T + YLK+ EM IFS PEA+ENT+E+A +C++ L Sbjct: 288 QDIASCIGSGARVDDENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELD 347 Query: 287 VHAPILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344 + D+ + E R + GL R + + + R ++E Sbjct: 348 -----WTHMYLPKFPDLAEGETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYE 402 Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404 ++I + F+ YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT DPL L+F Sbjct: 403 YDIICKKGFADYFLIVQEYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMF 462 Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464 ERFL+P R MPD D+DF +RR EV+ +V+ YG ERV+ +IT+ +++AK A+ D R Sbjct: 463 ERFLSPQRSEMPDIDMDFDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRV 522 Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIA----------DDSRFREARLADPSVDRLLEI 514 L P RL K+IP DP + + F EA DP R+++ Sbjct: 523 LGYPVYMGQRLSKMIPGDPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDA 582 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 + +EGL+R HA ++I P++ VP D + + +TQ+ + GL+K DFL Sbjct: 583 ALSIEGLHRGEGVHACAVLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFL 642 Query: 575 GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633 GL+TLT++ +++ + + +D+ IPF D E Y LL T G+FQ+ES+GM ++ Sbjct: 643 GLRTLTVISRAIKNVKDSYGIDIDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIK 702 Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691 GM+P + I+AL++LYRPGP++ +V Y NR NG+E++ P + +L+ET G ++Y Sbjct: 703 GMRPTEYKHIVALIALYRPGPLNAGMVTSYINRMNGREEVKDYDPRLHDILEETYGTMVY 762 Query: 692 QEQVMQIAQLLSGYSLSEADV------------LRRAMGKKIKEEMDKQKERFISGASKN 739 QEQVMQI+ +SG++ E+D ++ + + + + +GA +N Sbjct: 763 QEQVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRN 822 Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799 G +++A +I++ + +FA Y FNKSH+A YA++ QTAW+K HYP EF+AA +T M Sbjct: 823 GFDRSVAESIWDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKT 882 Query: 800 EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASA 858 +KI + R I+I+PP +N DF I + A I+GVG IM E Sbjct: 883 DKIVHYVSACRHEGIKILPPDINESGKDFTATKEGIRFGFAGIRGVGAGVGEAIMLERQK 942 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQ 913 PF ++ DF R+D+ + R V+E+L+ AGA D GY+RMQ++ +D I A Sbjct: 943 GGPFANIHDFVDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAAT 1002 Query: 914 WVEKNRTNKHENIFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +K++ ++F E FSD + + + E VLG Y S HPL Sbjct: 1003 KRQKDKAVGQFSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLR 1062 Query: 970 VYKPILRKMGIKGYEESVA----------------TIRGNNIRLAAMVVSKQQKKTRKGS 1013 Y+ L K E G IR A MV + ++ T+ G Sbjct: 1063 PYEYALAKSRDYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGD 1122 Query: 1014 RIGWVTFSEPAKEYEANFFP 1033 + VT + FP Sbjct: 1123 PMAIVTLEDMEGSVTIVMFP 1142 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +FVHL HS +S+L+GA + +++ K PA+A+TD LF +F Sbjct: 2 AFVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDFDLACRKYN 58 >gi|196229518|ref|ZP_03128383.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428] gi|196226750|gb|EDY21255.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428] Length = 1219 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 295/1119 (26%), Positives = 471/1119 (42%), Gaps = 113/1119 (10%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 + SFVHL H+ YS L+GA+ + + K PA+AITD NLF A+EF Q ++G Sbjct: 2 SADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSSG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 + PIIGC++ + +LK T + + + LL +GY+ L++LVS +L D Sbjct: 62 VNPIIGCEVYVAPDSHLKKTATTQR--ESAFHLTLLAQNDQGYRNLVKLVSIAHL-DGMY 118 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 RI L + G +GLI L+G G I++A ++ A++ ++ + G + ++ Sbjct: 119 YKPRIDKELLAQYG-KGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIE 177 Query: 186 LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H + + + LA L LVA N+ FL D+ AHD L+ + + ++ + Sbjct: 178 LHNHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADER 237 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + Y K+ +EM ++F+++PEA +NT+ IA RC+ + Sbjct: 238 RMHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDTSPKYPNYTPPP-----G 292 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + + LR +AG+ R A ++ ++R + E++V+ + F+ YFLIV DFI Sbjct: 293 RTQNEYLREITLAGMHRRYGSDA-----DSEIVQKRFELEISVLEKQGFTNYFLIVWDFI 347 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 WAK++ IPVGPGRGS AGS+ AYA+ ITDIDP++F LLFERFLNP+R+S PD D+DFC Sbjct: 348 NWAKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCV 407 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR EVI YV+ KYG V+QIITFG+L AK+ LRDV R Y DR+ K+IPN+ Sbjct: 408 NRRGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELG 467 Query: 485 HPVSLQA---------------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529 + I + ++A +P+ +L +++ KLEGL R HA Sbjct: 468 ITLKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHA 527 Query: 530 AGIVIGDR-----------------------PLSQLVPMYRDVRSDLPVT---------- 556 AG+VIGDR PL+ + + D +T Sbjct: 528 AGVVIGDRDLSDYIPLTRANDNSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLIR 587 Query: 557 ----QFNMKWIEKAGLIKFDFL----GLKTLTLLQKSLDFLAQRGVKVDLSLIP----FD 604 F++ I FD L + L + + ++ D+ I Sbjct: 588 HREPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAILALY 647 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--------- 655 L+ + + + L M + ++ + + I Sbjct: 648 RPGPMDLIPDYIKRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAAQILAGYTLGGA 707 Query: 656 ------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 + K + + ++T I + + + A S S Sbjct: 708 DLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIF--DTLEKFAGYGFNRSHSA 765 Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN------- 762 A +K + + S + + Sbjct: 766 AYAWISYQTAYLKANYPVEF--MAAVMSNEVSNTDKISIFVGECERMGMTILPPDVNKSG 823 Query: 763 ---KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819 I+ A + +++E+ +D Sbjct: 824 LKFTPEEVNVEGIAAAQAARRKLQVAAQATEQGEDAPESIEEENVRFEDLPSGPGTNGSA 883 Query: 820 SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLN 878 TP D K+ I Y LAAIK VG I+E + F SLEDFC RVD KK+N Sbjct: 884 GAETPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMN 943 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----GTF 934 ++ LE LV GA D G R QL +D A ++R ++F + T Sbjct: 944 KKALECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATK 1003 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + K + K + +S+ + E+ +LGFY +GHPLD Y+ L K + + Sbjct: 1004 TTKGSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEKF--VPIAKLSEEEDKST 1061 Query: 995 IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 + + + S ++K T+K V + E + Sbjct: 1062 VTIGGALASVEKKFTKKDNKPFAVVVLEDVTASLEVMIW 1100 >gi|157826231|ref|YP_001493951.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford] gi|157800189|gb|ABV75443.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford] Length = 1185 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 403/1085 (37%), Positives = 598/1085 (55%), Gaps = 83/1085 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL+L I++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTLEKIVELASSNKMPAICLADRGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------VDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L + EGLI L + G + + + A T +++ GDR Y + R Sbjct: 111 DHITFEDLIKY-QEGLIALCCYTDGIVGKCLLAREQEQAMLFARTLQEILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIEDSYIKIASELSIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM IFSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMREIFSDLPNAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + +R A G + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSEHISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKKGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYGH RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGHNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PV+ QA+ + A + + +L+ S LEGL+RH STHAA Sbjct: 465 FSAVNPVTLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHVSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIACTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLKQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++ +E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEHEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +Y EFL A + LE++N +KI F Q+A+ I+I+ P++N+ F Sbjct: 765 VISYQTAYLKANYSAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINSSEGYFTT 824 Query: 831 ----------------------------------------GDNRIYYSLAAIKGVGTTTA 850 + I ++L AIKGV + Sbjct: 825 CHFGSALCHPRVGVDPEKTSEMKMDSRFCENNIESTGYDKEERAIIFALGAIKGVTPSFG 884 Query: 851 RHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + + + F S+ DF R+ K +N ++LE+L+ +G D +R+QL S+ + Sbjct: 885 KLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFLSISKLL 944 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Y+ + + + ++ K + L + + E +G + S HPL Sbjct: 945 AYSTSYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFESMGLFISNHPLT 1001 Query: 970 VYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 Y+ I ++ I G + LA ++ K + + +G R + S+P + Sbjct: 1002 EYQEIFSRLNILNTAYLYNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIF 1060 Query: 1028 EANFF 1032 E + F Sbjct: 1061 ELSVF 1065 >gi|296390977|ref|ZP_06880452.1| error-prone DNA polymerase [Pseudomonas aeruginosa PAb1] Length = 1024 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 280/1034 (27%), Positives = 455/1034 (44%), Gaps = 78/1034 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S GA S + + A A+AITD +L + Q A +Q Sbjct: 2 SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ ++ P +VLL EGYQ L L++R K Sbjct: 62 LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ LQ+ L + G +++ ++ F RL++ ++ Sbjct: 105 YRLLREDLQQPLAGLLAIWLPNDHGD--------------EQVAWLRERFPQRLWLGVEL 150 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HRG D R +++ LA LP VA + + D + A+ + VS+ Sbjct: 151 HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ R+ L T++IA RC F L+ PR + D Sbjct: 211 F-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR+ G+ R GA A R++++ EL +IA + + YFL V D + +A Sbjct: 266 ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D+DF +RR Sbjct: 320 RSREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 379 EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + + P + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 439 SAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605 ++ V Q++ ++ GL+K D L L L+ L++S D + LS+ D Sbjct: 495 ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 555 PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 615 RRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +ER G NG A IFE + F YGF +SHAA++A+++Y ++W+K H Sbjct: 675 GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837 P F A + + QDAR+ +Q P V D + I Sbjct: 735 EPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFGQAQPAIRL 794 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I+G AR I + +PF + D R +L+ R LE L AGAL Sbjct: 795 GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + ++ ++ +FA ++L + + ++ Sbjct: 852 RHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDYA 896 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG HPL + + L+ + E G IR+A +VV +Q+ +T G I + Sbjct: 897 LLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954 Query: 1018 VTFSEPAKEYEANF 1031 +T + Sbjct: 955 ITLEDEFGMVNVVV 968 >gi|313105494|ref|ZP_07791765.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016] gi|310878267|gb|EFQ36861.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016] Length = 1024 Score = 625 bits (1612), Expect = e-176, Method: Composition-based stats. Identities = 279/1034 (26%), Positives = 456/1034 (44%), Gaps = 78/1034 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S GA S + + A A+AITD +L + Q A +Q Sbjct: 2 SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ ++ P +VLL EGYQ L L++R K Sbjct: 62 LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ LQ+ +G + + ++ ++ F RL++ ++ Sbjct: 105 YRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQAAWLRERFPQRLWLGVEL 150 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HRG D R +++ LA LP VA + + D + A+ + VS+ Sbjct: 151 HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ R+ + L T++IA RC F L+ PR + D Sbjct: 211 F-PNGERHLRTLEALLGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR+ G+ R GA A R++++ EL +IA + + YFL V D + +A Sbjct: 266 ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D+DF +RR Sbjct: 320 RGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 379 EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + + P + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 439 SAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605 ++ V Q++ ++ GL+K D L L L+ L++S D + LS+ D Sbjct: 495 ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 555 PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 615 RRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +ER G NG A IFE + F YGF +SHAA++A+++Y ++W+K H Sbjct: 675 GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837 P F A + + QDAR+ +Q P V D + I Sbjct: 735 EPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFGQAQPAIRL 794 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I+G AR I + +PF + D R +L+ R LE L AGAL Sbjct: 795 GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + ++ ++ +FA ++L + + ++ Sbjct: 852 RHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDYA 896 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG HPL + + L+ + E G IR+A +VV +Q+ +T G I + Sbjct: 897 LLGTTLGPHPLKLLRGKLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954 Query: 1018 VTFSEPAKEYEANF 1031 +T + Sbjct: 955 ITLEDEFGMVNVVV 968 >gi|209515641|ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] gi|209503877|gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] Length = 1049 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 266/1038 (25%), Positives = 450/1038 (43%), Gaps = 64/1038 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S+++ L GA + + A A+AITD +L + A A + Sbjct: 9 PAYAELFCFSNFTFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + D ++LL GY L EL++ + K Sbjct: 69 FIVGSYFRLVNADG-----------SPAFGLILLARNRNGYGNLSELITLARMR-APKGE 116 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L+ + + + F S + ++ F R +V L Sbjct: 117 YRLTPQDLSRPEKAYRHLLGMPDCLAILVPD--FPASEDALDAQVEWLDATFTGRAWVGL 174 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V +A + ++P+VA + D + A+ V + Sbjct: 175 VLHQRAMDDMHRGAVEFVARSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPV-HECG 233 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + +AL T++I RC+F L P + Sbjct: 234 YDLAPNAEQHLRSRLRLANLYPQDALAATLDITSRCTFSLDELRYEYPDELVPAG----H 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + G + R G +Q+++ EL +IA +++ YFL V D ++ Sbjct: 290 TPASYLRQETYIGAQRRFPSG------IPHHVQQQIEHELELIADLQYEPYFLTVYDIVR 343 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 344 FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG +R A + + + ALR+ G+AL + VD + K Sbjct: 403 RREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPLIVDAVAKSHHWFDGR 462 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L A+ P + +++ +L RH S H+ G VI L++LVP+ Sbjct: 463 QDLLARFAES----GLDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPV 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604 D V +++ +E GL+K D L L L+ ++++LD QRG + ++ IP + Sbjct: 519 ENAAMVDRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPAE 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +++ T+G+FQ+ES L M+P D++ V++ RPGPI V+ Sbjct: 579 DEATYAMISAADTVGVFQIESRAQMSMLPRMRPTEFYDLVIEVAIVRPGPIQGGAVHPYL 638 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + + L T GV I+QEQVMQ+A L +G++ EAD LRRAM Sbjct: 639 QRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++K +R + G + G ++ A IFE + F +YGF +SHAA++A++ Y ++W+K Sbjct: 699 KGGLEKYYDRIVLGMQERGYTQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RI 835 H P FLAA + + + QDA++ ++++P V D + N + Sbjct: 759 HEPEAFLAAMLNSQPMGFYSPSQLVQDAKRHGVKVLPVDVTVSGWDSSLEPNAGTPRPAV 818 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L+ ++G+ A I A A +PF S+ D R +L+R+ L +L A AL Sbjct: 819 RLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLDRKDLHALAQANALTSLA 875 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L ++ + + + + + Sbjct: 876 GNRREALWQ--SVVAVPDKDMLAAAAAQD--------------ETPELGAPSEADDIVAD 919 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 R LG + HPL++ +P L + G R +V +Q+ T KG + Sbjct: 920 YRSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRDGRLARACGLVTVRQRPGTAKG--V 977 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT + +P Sbjct: 978 VFVTLEDETGNVNVIIWP 995 >gi|240173286|ref|ZP_04751944.1| error-prone DNA polymerase [Mycobacterium kansasii ATCC 12478] Length = 1100 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 291/1038 (28%), Positives = 482/1038 (46%), Gaps = 58/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L H++YS L+GA + ++++ A A+A+TD N L+ A+ F++ A Sbjct: 59 SSAAYAELHAHTAYSFLDGASTPEELVEEAARLDLCALALTDHNGLYGAVRFAEAAAELD 118 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + P P P +++L EGY+RL ++ +L K Sbjct: 119 MRTVFGAELSL------GSEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 172 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185 R L E +LTG G + +A A++ L FG R+ + Sbjct: 173 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSEGGPDAAQRALADLVDRFGAYRVSIE 232 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 233 LTHHGHPLDDERNATLAGLAPRFGVGVVATTGAHFAHPSRSRLAMAMGAIRARQSLDSAA 292 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ +C+F L + AP LP F Sbjct: 293 GWLAPLGGSHLRSGDEMARMFAWRPEAVTAAAELGGQCAFELALIAPQLPPFDVPGG--- 349 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR +AG R A +AQ + EL VIA++KF GYFL+V D Sbjct: 350 -HTEDSWLRQLVMAGARHRYGPPDGAPRAYAQ-----IGHELKVIAQLKFPGYFLVVHDI 403 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 Q+ ++NNI GRGS A S YAL IT +DP+ LLFERFL+P R PD DID Sbjct: 404 TQFCRRNNIL-CQGRGSAANSAVCYALGITAVDPVANELLFERFLSPARDGPPDIDIDIE 462 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 DRR++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K I + Sbjct: 463 SDRREKVIQYVYDKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISHWN 522 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 523 GQAAEVDGIPE---------------QVVDLATQIRNLPRHMGIHSGGMVICDRPIADVC 567 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ +VDL+ + Sbjct: 568 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAMDLVAEHKGLEVDLAKLD 627 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 628 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLRPRVFYDLVVEVALIRPGPIQGGSVHP 687 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + +V HP + P L++T GV ++QEQ+MQ+A +G++ +EAD LRRAM K Sbjct: 688 YIRRRNGIDPVVYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSK 747 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 748 RSTERMQRLRGRFYDGMRALHGTRDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 807 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + + Sbjct: 808 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNASLAHATLENAGMEVR 867 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ E+L AGAL CFG Sbjct: 868 LGLGAVRHIGDDLAEKLVGERNANGPFASLLDLASRV---QLSVPQTEALATAGALGCFG 924 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + A W + + +D + + + Sbjct: 925 MSRRE-----------ALWAAGAAATQRPDRLPGVGAQGADGSHIPVLPGMSELELAAAD 973 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ + + G+ + +A V +Q+ T +G + Sbjct: 974 VWATGISPDSYPTQFLRADLDAMGVLPADALGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1031 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1032 TFINLEDETGMVNVLCTP 1049 >gi|330998194|ref|ZP_08322020.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT 11841] gi|329568886|gb|EGG50684.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT 11841] Length = 1316 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 329/1059 (31%), Positives = 522/1059 (49%), Gaps = 98/1059 (9%) Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A +PI GC++ + + ++ K +++L GY L++LVS+ + Sbjct: 142 AARKRLFKPIFGCEMYVAPR---RLDQMEKEKDGRRYHLIVLAKNETGYHNLVKLVSKSW 198 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 D R L E EGLI+ + +G + R + AE+ + +K++FGD Sbjct: 199 T-DGFYVRPRTDRFEL-EAHREGLIICSACIAGEVPRKILSGDLEGAEEAVQWYKRVFGD 256 Query: 181 RLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227 Y+ LQRH D + +++++LA +++ LV TN+ F+ +ED EA Sbjct: 257 NYYLELQRHEVKDPDQRANRETFPLQQRANARLIELARKYDVKLVCTNDCHFVEQEDAEA 316 Query: 228 HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287 HD L+ ++ + + R + + K R+EM +F+D+PEAL NT +I + F Sbjct: 317 HDRLICLSTNRDLDDPKRMLYSKQEWFKTRAEMNEVFADVPEALANTCDICDQVEFYSID 376 Query: 288 HAPILPRFIEKECDDIQKE----------------------------------------- 306 HAPI+P F E ++ Sbjct: 377 HAPIMPNFAIPEEFGTEEGYRKKYTDEDLFEEFTRDENGNVVLSREDAEQKVKKLGGCDK 436 Query: 307 ------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 E + L G + R+R++FEL+V+ M F GYFLIV Sbjct: 437 LYRLKLEADYLAELTYIGAAKLYGDPL------PEHVRERINFELHVMKTMGFPGYFLIV 490 Query: 361 ADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 D+I A+ N+ VGPGRGS AGS AY L IT IDP+ + LLFERFLNPDR+S+PD D Sbjct: 491 QDYINAARHELNVSVGPGRGSAAGSAVAYCLGITKIDPIEYDLLFERFLNPDRISLPDID 550 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF D R +V+ +V KYG E+VA IIT+G++ K A++DV R ++P + LCKLI Sbjct: 551 VDFDDDGRGKVLSWVTQKYGEEKVAHIITYGTMATKLAIKDVARVEKLPLDISNGLCKLI 610 Query: 480 P--------NDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAA 530 P AI+ ++A +P + + ++ LEG R+ HA Sbjct: 611 PDKLPDDENGKSRKMNLPNAISCIPELQQAEASPNPLLRDTIRYARMLEGNVRNTGVHAC 670 Query: 531 GIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586 G++I +S VP+ + TQ+ IE GLIK DFLGLKTL+++++ Sbjct: 671 GVIICRDDVSDWVPVSTAEDKETGEKLRCTQYEGSVIEDTGLIKMDFLGLKTLSIIKECQ 730 Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645 + G+++D+ + D TY L T+G FQ ES GM++ L +QP ED+IA Sbjct: 731 ANIYDSLGMEIDVDALDITDPATYRLYCDGRTIGTFQFESPGMQKYLRELQPSTFEDLIA 790 Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 + +LYRPGP+D I + +RK G++ + P ++ LK+T G+ +YQEQVM +++ L+ + Sbjct: 791 MNALYRPGPMDYIPDFIDRKQGRKPVEYDIPCMEKYLKDTYGITVYQEQVMLLSRQLADF 850 Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 + E+D LR+AMGKK+ E+++ +FI G KNG + I+ KFA Y FNKSH Sbjct: 851 TRGESDTLRKAMGKKLIEKLNHMYPKFIEGGKKNGHDPKVLEKIWADWKKFASYAFNKSH 910 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 A Y+ ++YQTA++K ++P +++AA M+ + N+ I K + + I + P VN Sbjct: 911 ATCYSWVAYQTAYLKANFPAQYMAAVMSRSLANITDITKLMSECKSIGINTLGPDVNISR 970 Query: 826 VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883 F V D I + L A+KG+G + I++ A P+ ++ DF RV S + R LE Sbjct: 971 RKFSVDVDGNIRFGLGAVKGLGDSAVDAIVKEREAHGPYKNIFDFIQRVPSGAVKRNNLE 1030 Query: 884 SLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 SLV +GA DCF G +R Q +D + +Y + ++ ++F Sbjct: 1031 SLVLSGAFDCFEGITREQYFGVNAKGESFIDQLARYGSRYQTDKDAVQNSLFGDMDMVEI 1090 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GN 993 + + +S R E+ ++G Y S HPLD Y IL+ + + + Sbjct: 1091 ATPEVPQAEPWSSLERLNKERDLVGIYLSAHPLDDYAVILQNVCNVHMADLKDLEQFVNM 1150 Query: 994 NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ L MV + ++ ++ G G VT + YE F Sbjct: 1151 DLTLGGMVTAVRKGISKTGKPYGIVTMEDFTGAYELALF 1189 Score = 91.4 bits (225), Expect = 8e-16, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 FVHL VH+ YS+L+G S++ ++DK D +AITD N+ + EF Sbjct: 3 DFVHLHVHTQYSILDGQASVSRLVDKAMKDGMRGMAITDHGNMMAIKEFFNYTTKKN 59 >gi|107100135|ref|ZP_01364053.1| hypothetical protein PaerPA_01001156 [Pseudomonas aeruginosa PACS2] Length = 1024 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 279/1034 (26%), Positives = 453/1034 (43%), Gaps = 78/1034 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S GA S + + A A+AITD +L + Q A +Q Sbjct: 2 SAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ ++ P +VLL EGYQ L L++R K Sbjct: 62 LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ LQ+ L + G ++ ++ F RL++ ++ Sbjct: 105 YRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQRLWLGVEL 150 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HRG D R +++ LA LP VA + + D + A+ + VS+ Sbjct: 151 HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ R+ L T++IA RC F L+ PR + D Sbjct: 211 F-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR+ G+ R GA A R++++ EL +IA + + YFL V D + +A Sbjct: 266 ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D+DF +RR Sbjct: 320 RGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV +YG +R A + A+RDV +AL +P QVD L Sbjct: 379 EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + + P + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 439 SAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605 ++ V Q++ ++ GL+K D L L L+ L++S D + LS+ D Sbjct: 495 ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 555 PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+NG+E + ++ + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 615 RRNGEEPVAYPSAELEKVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +ER G G A IFE + F YGF +SHAA++A+++Y ++W+K H Sbjct: 675 GGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837 P F A + + QDAR+ +Q P V D + I Sbjct: 735 EPAAFACALINSWPMGFYSPDQLLQDARRHTLQTRPVDVRHSGWDCSLESFGQAQPAIRL 794 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I+G AR I + +PF + D R +L+ R LE L AGAL Sbjct: 795 GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + ++ ++ +FA ++L + + ++ Sbjct: 852 RHKARWAVASV------------EPQLPLFAEGTVIEETTVSLP---LPSRGEELLSDYA 896 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG HPL + + L+ + E G IR+A +VV +Q+ +T G I + Sbjct: 897 LLGTTLGPHPLKLLRGQLKACRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954 Query: 1018 VTFSEPAKEYEANF 1031 +T + Sbjct: 955 ITLEDEFGMLNVVV 968 >gi|307730066|ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003] gi|307584601|gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003] Length = 1049 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 274/1038 (26%), Positives = 450/1038 (43%), Gaps = 64/1038 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S++S L GA + + A A+AITD +L + A A + Sbjct: 9 PAYAELFCLSNFSFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + D ++LL GY L EL++ K Sbjct: 69 FIVGSYFRLVNADG-----------SPAFGLILLAKNRNGYGNLSELITLARTR-APKGE 116 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L + L+ + + + F +V + +L + F R +V L Sbjct: 117 YRLTPQDLSRPDRDYRHLLGVPDCLAILVPN--FPAKEEVLDAQLEWLDETFPGRAWVGL 174 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V +A ++P+VA L D L A+ V + Sbjct: 175 VLHQRAMDDIHRGAVEFIARNRDVPVVALGEVLMHVRSRKPLQDTLTAIRVGKPV-HECG 233 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + PEAL TV+IA RC+F L P + Sbjct: 234 YDLAPNAEQHLRSRLRLANLYSPEALAATVDIAARCTFSLDELRYEYPDELVPSGF---- 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G + R G +++++ EL +IA +++ YFL V D ++ Sbjct: 290 TPAAYLRQETYIGAQRRFPSG------IPLQVQEQIEHELELIAELQYEPYFLTVYDLVR 343 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 344 FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG +R A + +A+ LR+ G+AL + VD + K Sbjct: 403 RREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAKSHHWFDNS 462 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ + P + ++ +L G RH S H+ G VI L++LVP+ Sbjct: 463 ADLLKRFEEC----GLNPQTPLIRAWATLAAQLYGFPRHLSQHSGGFVISRGKLTRLVPV 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604 + V Q++ +E GL+K D L L L+ ++++L+ QRG + ++ IP + Sbjct: 519 ENAAMPERSVIQWDKDDLESLGLLKVDVLALGMLSAIRRTLELVSEQRGERFEMQDIPAE 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662 D TY ++ T+G+FQ+ES L M+P D++ V++ RPGPI + Y Sbjct: 579 DEATYDMICAADTVGVFQIESRAQMSMLPRMRPRVFYDLVIEVAIVRPGPIQGGAVHPYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ G E + ++ L T GV I+QEQVMQ+A L +G++ EAD LRRAM Sbjct: 639 RRRQGFEPVTYPSAALETALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K + K +R + G + G A IFE + F +YGF +SHAA++A++ Y ++W+K Sbjct: 699 KGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALLVYTSSWLKC 758 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRI 835 H P FLAA + + + QDA++ ++++P V+ + + + Sbjct: 759 HEPEAFLAAMLNSQPMGFYSSSQLVQDAQRHGVKVLPVDVSVSGWNSSLERRAGGERPAV 818 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L+ ++G+ TA I A A +PF S++D R L+RR L L A AL Sbjct: 819 RLGLSLLRGMKEGTAGRIENARAVRPFASVKDLARRA---ALDRRDLHILADANALASLA 875 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L + +++ A + + + + Sbjct: 876 GNRREALW------------QSAAAVPEKDMLAAAAVEDET----PELGAPSEAHDIVAD 919 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 R LG HPL++ +P L + G R +V +Q+ T KG + Sbjct: 920 YRSLGLTLGRHPLELLRPQLLANRLMPASTLRTYRDGRLARGCGLVTVRQRPGTAKG--V 977 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT + +P Sbjct: 978 IFVTIEDETGNVNVIIWP 995 >gi|149198162|ref|ZP_01875209.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155] gi|149138764|gb|EDM27170.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155] Length = 1223 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 336/1019 (32%), Positives = 544/1019 (53%), Gaps = 24/1019 (2%) Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81 +L+ A ++ ++ ++ A A+TD N+ ++ F+ A I+PI+GC ++ Sbjct: 1 MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNS- 59 Query: 82 NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141 Q + + ++LL GYQ L ++ ++ +L RI S+L++ + Sbjct: 60 ----RTQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHLES-FHIKPRIDRSFLRQY-S 113 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-RGYDRYRESQ 199 EG+I + I N L + +FG + Y+ +Q+H R D + Sbjct: 114 EGIIAIAPFHDSDIASDLSKNIDPT--NALNFYVDIFGKENFYLEIQKHKREGDDEKYPL 171 Query: 200 VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259 V+QLA +E+ LVA+ + + HD++ V TV + ++YL E Sbjct: 172 VLQLAKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEKTVHDPQKLRFPEKNYYLHLPEE 231 Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG- 318 M +FSD+PEALENT +IA +C + ++ L V G Sbjct: 232 MEGLFSDVPEALENTRKIANQCDVAFDTSEHYPV-----YPMSDDRTQQQFLLEICVGGL 286 Query: 319 LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378 E K ++ +R DFEL VI + + YFL+V DFI W+K N+IPVGPGR Sbjct: 287 KERYGLDHKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGR 346 Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438 GSGAGS+ AY IT+IDP++++LLFERFLNP+R+S PDFDIDFC+ RR EVI YV+ KY Sbjct: 347 GSGAGSIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKY 406 Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA---DD 495 G E+VAQI T+G+++AKA ++DV RAL +++ D++ KLIP D + Sbjct: 407 GSEKVAQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITLHKALFDPKIKS 466 Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555 ++ V ++++ + LEGL R+ HA G++IGD+ L+ L+P+ + V Sbjct: 467 EELIALNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLI-SGANGEVV 525 Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614 TQF+ E GL+K DFLGL+TLTL++ +L + + +++D+ IP DD TY L Sbjct: 526 TQFSAGPCEDLGLLKMDFLGLRTLTLIKDTLGLIKENHDIEIDIEAIPIDDRRTYKLFQE 585 Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674 T +FQ ES+GM++ ++ +QP D+IA+ +LYRPGPI I + RK+G+E+I Sbjct: 586 GKTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIAYIPSFIERKHGREEITYD 645 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 +D L+ET G+ +YQEQVM ++Q L ++ EAD LR+AMGKK + + + K +F+ Sbjct: 646 CEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLKPKFLD 705 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 NG + +E FA Y FNKSH+ YA ++YQTA++K HYP EF+AA MT Sbjct: 706 QGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMAAVMTS 765 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854 E+ N +K+ F ++ R ++++PP++N V F V + I ++L AIKGVGT+ + I+ Sbjct: 766 ELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVENGAIRFALGAIKGVGTSASETIV 825 Query: 855 EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 + ++S + C RV ++R+VLE ++ +G +D FG R L Q +D +++ Sbjct: 826 RIRKEGEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRALEHSSS 885 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + ++FA + + + + + + E+ +LGFY +GHP+ +K + Sbjct: 886 KANDLAMGQMSLFAEVEEVNTISPD-DSMPEWDLRYKLDMEKTLLGFYATGHPVGEHKQL 944 Query: 975 LRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++K + RL M+ + +KT+KG + + E + Sbjct: 945 IKKFSSNSITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDLSDGIECICW 1003 >gi|104781527|ref|YP_608025.1| error-prone DNA polymerase [Pseudomonas entomophila L48] gi|95110514|emb|CAK15222.1| probable DNA polymerase III, alpha subunit [Pseudomonas entomophila L48] Length = 1026 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 287/1036 (27%), Positives = 457/1036 (44%), Gaps = 76/1036 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S + + + A+AITD L + Q A A Sbjct: 2 STPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHE 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ IIG ++ + P +VLLV GYQ L L++R K Sbjct: 62 LRLIIGSEVQVH----------------QGPKLVLLVQDLHGYQNLCALITRARRR-ARK 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 S ++ L E +GL+ L + + + LFG+RL++ Sbjct: 105 GSYQLLGEDL-EAHHQGLLAL------------WVAGPDEPSESGPWLRALFGERLWLAA 151 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 HRG D+ R + + +PLVA + + D + A+ V++ Sbjct: 152 HLHRGADDQARLAWLRAQGLRLGVPLVACGDVHMHARGRRALQDCMTAIRAHCSVAEAGG 211 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + + L+ T+ IAR+C+F L PR + E Sbjct: 212 LLFANGERHLRPLDQLREL-YPAPLLDETLNIARQCTFELSQLKYRYPRELVPEG----H 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR GL R G + R LD EL +I + + YFL V D + Sbjct: 267 SPASWLRALCEQGLPGRWPAG------PSDKVRAVLDKELALIEELGYESYFLTVHDIVA 320 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I GRGS A SV + L IT++DP+ LLFERFL+ +R PD D+DF D Sbjct: 321 FARRQRIL-CQGRGSAANSVVCFVLGITELDPMVHRLLFERFLSRERNEPPDIDVDFEHD 379 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YV ++YG R A S A A+RDV RAL + QVD L K Sbjct: 380 RREEVIQYVFSRYGRHRAALTAVVSSYHAAGAVRDVARALGLSADQVDALAKCCGRWSDR 439 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 Q +A+ PS+ R+L ++ +L G RH S H G VI ++PL QLVP+ Sbjct: 440 IPDDQRLAE----AGFDAQSPSLRRILVLAGELIGFPRHLSQHPGGFVISEQPLDQLVPV 495 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFD 604 V Q++ ++ GL+K D L L L+ L++ D RG+++ L+ IP D Sbjct: 496 ENATMEARTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLYRHRGIELTLASIPPD 555 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY ++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 DPATYAMIGRAETMGVFQIESRAQMAMLPRLRPENFYDLVIEVAIVRPGPIQGDMVHPYL 615 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R+ +E + + + + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 616 RRRLRQEPVTYPSEKLREVFQRTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKR 675 Query: 723 EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + ++R +SG +NG A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 676 HGGLEPHRQRLVSGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIY 836 H P F A + + Q+AR+ I++ P V D + + I Sbjct: 736 HQPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVLHSAWDCTLEPVGEGELAIR 795 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L ++G T +R + +A A +P+ +ED C R L+ R L AGAL Sbjct: 796 LGLRQVRGFSETDSRRLEQARAQRPWRDVEDLCLRA---GLDSRARGRLADAGALRALAG 852 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R Q + + +FA + + L + + Sbjct: 853 NRHQARWQVAAV------------QAQLPLFAQVEPAPEPVVALP---APTVTQDLHADY 897 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG HPL + + LR +G + E G+NI +A +VV +Q+ +T G + Sbjct: 898 DTLGTTLGPHPLSLLRSRLRALGCRSAGELAGVEDGDNIAVAGLVVGRQRPQTASG--VT 955 Query: 1017 WVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 956 FVTLEDEHGMVNVVVW 971 >gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 1434 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 343/1076 (31%), Positives = 545/1076 (50%), Gaps = 73/1076 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 + H+ H+ +S+L + + +++D+ PA+ ITD NL + F + Sbjct: 253 YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312 Query: 67 ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+ I+GC++ + DN K V L +GY L +L S + Sbjct: 313 PKKLIKGIVGCEVFLS--DNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTE 370 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 RI +++ E LI LTG + I + AEK L +K+LFGD Sbjct: 371 GFYAGIPRIGKKLIEKY-KENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDF 429 Query: 183 YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L RH + + +++ + + + + NN+ +L + + AHD+L+ V + S Sbjct: 430 YIELLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQS 489 Query: 242 QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 + Y KN EM IFSDLPE+ + E+ + +LP+ Sbjct: 490 TPIGKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPK 549 Query: 295 FIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346 F D + E L+ G + R ++ ++R+ FEL Sbjct: 550 FQIPRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKNM-------TKEIQERILFELK 602 Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406 I R+ + GYFLIV +FIQ A+K NI +GPGRGS AGSV AY + IT+IDP+++ LLFER Sbjct: 603 TIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFER 662 Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466 FLNP+R+S+PD DIDF RD++I +V KYG +VAQIIT+ ++ AK+++RD GR L Sbjct: 663 FLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLD 722 Query: 467 MPYSQVDRLCKLIPNDPAHP--------VSLQAIADDSRFREARLADPSVDRLL----EI 514 + + DRL K+IPN + + D + ++ R + D L + Sbjct: 723 LSLKETDRLAKMIPNMLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQ 782 Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574 ++ LEG R HA GI+I + + +P+ SDL +TQF+ +E AGL+K DFL Sbjct: 783 AKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFL 842 Query: 575 GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634 GLKTLT+++ +++ + ++ P +D +TY L T+ +FQ ES GM++ L Sbjct: 843 GLKTLTIIKDAVNLIKKKRKNNTELSFPLEDEKTYCLFQKGETIAVFQYESPGMQKYLRQ 902 Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694 ++PD +D+IA+ +LYRPGP+ I + +RK+GKE I P ++ LKET G+ IYQEQ Sbjct: 903 LKPDKFDDLIAMTALYRPGPLQYIPNFISRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 962 Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754 VM IAQ ++ +S +AD+LR AMGKK KE ++ + +FI A K G SK I I++ Sbjct: 963 VMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILEKIWKDWE 1022 Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814 F+ Y FNKSHA YA I++QTA++K H+P E++A+ ++ M N+ ++ F ++ R+ NI Sbjct: 1023 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIEECRKMNI 1082 Query: 815 QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872 ++ P +N F+V D NRI + L IKGVG + I++ + P+ S+ D R+ Sbjct: 1083 SVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSILDLVKRI 1142 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKNRTNKHE 924 D + +N++ LESL+ +G+LDCF R Q L +L+ I ++ +K + Sbjct: 1143 DLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQKAKNK--- 1199 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 D+ + + ++ + E+ VLG Y S HPLD Y ++ Sbjct: 1200 -----STEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDYYYEMKYFMNTSLS 1254 Query: 985 ES------VATIRGNNIRLAAMVVSKQQKKT--RKGSRIGWVTFSEPAKEYEANFF 1032 + G I ++ +KKT R G + G + E + Sbjct: 1255 NLSLISKKESMFVGKKIHTCGILSKI-EKKTYIRSGIKYGLFLLEDYNSSKEFRIY 1309 >gi|291279285|ref|YP_003496120.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1] gi|290753987|dbj|BAI80364.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1] Length = 932 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 371/930 (39%), Positives = 554/930 (59%), Gaps = 31/930 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F+HL +H+ YSLL+GA+ ++ ++ K+ A+AITD ++ ++F +A A I+P Sbjct: 4 DFIHLHLHTQYSLLDGAIHISELMKKLKEHGSKAVAITDHGTMYGIVDFYTQALANDIKP 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIGC++ + K +VLL G + L LVS ++ + Sbjct: 64 IIGCEVYVAPDSRFNKNYSKKE--DKSYHLVLLAKNNAGLKNLQYLVSLGHI-EGFYYKP 120 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 RI L + ++GLI L+ + + + A++ L + ++FG D Y+ +Q Sbjct: 121 RIDKELLAKY-SKGLIGLSACLASEPAQKALTDGYAAAKESALEYYEIFGKDNYYLEIQD 179 Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 + ++Y + + ++++ +P+VATNN FL++EDY +H VLM + + ++ +R Sbjct: 180 NNIPEQYIVNTIFMEISRETGIPIVATNNCHFLNKEDYSSHQVLMCIQYQQTLNDPNRRD 239 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + ++K+ EM F ++ EAL NTV+IA RC+ + LP + E Sbjct: 240 SHSSELFVKSPEEMWQAFGEIEEALINTVKIAERCNVSMTFGELHLPVYDVPEG----YT 295 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L + A GL RLA+ + Y QRL++EL +I + GY+LIV DFI + Sbjct: 296 LKTYLEHIAKEGLHKRLAKVPL---ELHSKYYQRLEYELKIIHEKGYDGYYLIVWDFINF 352 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID C +R Sbjct: 353 ARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDICMNR 412 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV+NKYGH+RVAQIITFG L A+ +RDVGR L++P VD++ K+IP P Sbjct: 413 REEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPAKPDLT 472 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + +A+ D + + LLE + KLEGL R+A HAAG+VI D+PL + VP+ Sbjct: 473 LK-KALEMDPELKPNIESIEKGKELLEHALKLEGLLRNAGMHAAGVVISDKPLVEYVPLC 531 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 + ++D VTQF +EK GL+K DFLGLK LT++ + + + + D+S IP DD Sbjct: 532 KG-QNDEVVTQFEKDTLEKVGLVKLDFLGLKNLTVIDYASKLIRKSKDPNFDISAIPLDD 590 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNN 663 +T+ LL++ T G+FQLESSGM+ L+ ++P EDII LV+LYRPGP + + Sbjct: 591 KKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIVLVALYRPGPIGSGILDDFLK 650 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 RK+G +++ P ++ +LKET G+I+YQEQVMQIAQ+++GYSL AD+LRRAMGKK E Sbjct: 651 RKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKKPE 710 Query: 724 EMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 EM K ++ F+ GA K G + IA IF+L+AKFA+YGFNKSH+AAYA++SYQ Sbjct: 711 EMAKHRKIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVSYQ 770 Query: 776 TAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 TA++K HYPVE++A+ +T E +I++ + I ++ P +N D V N Sbjct: 771 TAYLKAHYPVEYMASIITQEFEFKYNYRIEELIAECNNMGITVLLPDINKSEKDTVVERN 830 Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 I L AI I+ E + + F +L+DFC R+D +N+ + S + GA+D Sbjct: 831 LIKVGLKAIHD-NDEIIDKIIFERNRNGEFKNLKDFCKRIDLTIVNKNAISSFIKYGAMD 889 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 FG SR QLLQ L++ K +K + Sbjct: 890 SFGKSRKQLLQVLNDTIKLCLQEQKWKKTG 919 >gi|161350055|ref|NP_338003.2| error-prone DNA polymerase [Mycobacterium tuberculosis CDC1551] gi|161352461|ref|NP_217887.2| error-prone DNA polymerase [Mycobacterium tuberculosis H37Rv] gi|161511527|ref|NP_857046.2| error-prone DNA polymerase [Mycobacterium bovis AF2122/97] gi|298526851|ref|ZP_07014260.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|308232437|ref|ZP_07416048.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu001] gi|71151828|sp|Q7TWL9|DNAE2_MYCBO RecName: Full=Error-prone DNA polymerase gi|298496645|gb|EFI31939.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|308213944|gb|EFO73343.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu001] gi|323717954|gb|EGB27142.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis CDC1551A] Length = 1091 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 54 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 114 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 344 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 345 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 399 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 517 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 518 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 920 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 964 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 965 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1022 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1023 TFINLEDETGMVNVLCTP 1040 >gi|148663233|ref|YP_001284756.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra] gi|148824579|ref|YP_001289333.1| error-prone DNA polymerase [Mycobacterium tuberculosis F11] gi|215405390|ref|ZP_03417571.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987] gi|215413269|ref|ZP_03421958.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A] gi|219559445|ref|ZP_03538521.1| error-prone DNA polymerase [Mycobacterium tuberculosis T17] gi|260188426|ref|ZP_05765900.1| error-prone DNA polymerase [Mycobacterium tuberculosis CPHL_A] gi|260202555|ref|ZP_05770046.1| error-prone DNA polymerase [Mycobacterium tuberculosis T46] gi|260206735|ref|ZP_05774226.1| error-prone DNA polymerase [Mycobacterium tuberculosis K85] gi|289444974|ref|ZP_06434718.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis T46] gi|289449069|ref|ZP_06438813.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis CPHL_A] gi|289571607|ref|ZP_06451834.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis T17] gi|289576104|ref|ZP_06456331.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis K85] gi|294995861|ref|ZP_06801552.1| error-prone DNA polymerase [Mycobacterium tuberculosis 210] gi|297636030|ref|ZP_06953810.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 4207] gi|297733029|ref|ZP_06962147.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN R506] gi|313660361|ref|ZP_07817241.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN V2475] gi|2661649|emb|CAA15755.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|31620149|emb|CAD95567.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|148507385|gb|ABQ75194.1| DNA polymerase III subunit alpha DnaE2 [Mycobacterium tuberculosis H37Ra] gi|148723106|gb|ABR07731.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis F11] gi|289417893|gb|EFD15133.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis T46] gi|289422027|gb|EFD19228.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis CPHL_A] gi|289540535|gb|EFD45113.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis K85] gi|289545361|gb|EFD49009.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis T17] gi|326905210|gb|EGE52143.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis W-148] Length = 1079 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 42 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 102 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 333 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 387 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 506 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 908 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 953 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1011 TFINLEDETGMVNVLCTP 1028 >gi|121639297|ref|YP_979521.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991794|ref|YP_002646483.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172] gi|121494945|emb|CAL73431.1| Probable dna polymerase III (alpha chain) dnaE2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774909|dbj|BAH27715.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172] Length = 1079 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 42 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 102 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 333 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 387 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 506 GQADDVDGIPE---------------QVIDLATQIRSLPRHLGIHSGGMVICDRPIADVC 550 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 908 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 953 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1011 TFINLEDETGMVNVLCTP 1028 >gi|289555649|ref|ZP_06444859.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis KZN 605] gi|289440281|gb|EFD22774.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis KZN 605] Length = 1094 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 57 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 116 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 117 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 170 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 171 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 230 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 231 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 290 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 291 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 347 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 348 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 401 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 402 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 460 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 461 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 520 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 521 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 565 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 566 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 625 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 626 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 685 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 686 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 745 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 746 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 805 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 806 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 865 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 866 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 922 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 923 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 967 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 968 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1025 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1026 TFINLEDETGMVNVLCTP 1043 >gi|253800417|ref|YP_003033418.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435] gi|289747192|ref|ZP_06506570.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987] gi|308379492|ref|ZP_07486489.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu010] gi|308380670|ref|ZP_07490710.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu011] gi|68565552|sp|O50399|DNAE2_MYCTU RecName: Full=Error-prone DNA polymerase gi|13883304|gb|AAK47817.1| DNA polymerase III, alpha subunit, putative [Mycobacterium tuberculosis CDC1551] gi|253321920|gb|ACT26523.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435] gi|289687720|gb|EFD55208.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987] gi|308356814|gb|EFP45665.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu010] gi|308360762|gb|EFP49613.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu011] gi|328460150|gb|AEB05573.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis KZN 4207] Length = 1098 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 61 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 121 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 175 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 235 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 295 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 351 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 352 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 406 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 465 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 524 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 525 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 570 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 630 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 690 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 750 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 810 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 870 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 927 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 971 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 972 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1029 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1030 TFINLEDETGMVNVLCTP 1047 >gi|134296110|ref|YP_001119845.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4] gi|134139267|gb|ABO55010.1| error-prone DNA polymerase, DnaE-like protein [Burkholderia vietnamiensis G4] Length = 1093 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 278/1069 (26%), Positives = 453/1069 (42%), Gaps = 94/1069 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA ++ + A A+AI D ++ + A A + Sbjct: 21 PDYAELCCVSNFTFLRGASHAEELVARAAQLGYQALAIADECSMAGIVRAHVAAKEAELP 80 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQ 127 I+G + + D S++ L EGY L EL++ + K Sbjct: 81 LIVGSRFRLVTADGKLAV-----------SLIALAQNREGYGNLCELITLARTREGVEKG 129 Query: 128 SVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 S R+ L E L L I A + + + + + +F R ++ Sbjct: 130 SYRLTPRDLDHPEAPFEHLRGLPDCL--VIVEAEYGAADERLIAQADWARTVFPGRAWLG 187 Query: 186 LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L HR D E V A L +VA HD L AV + Sbjct: 188 LCLLHRSRDDEHEDAVRWAARETGLRMVALGGVEMHVRSRKPLHDALTAVRLGKP-IAEC 246 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + P+ RS + EAL+ TV IA C F L P + E + Sbjct: 247 GFDLAPNAERCLRSRLRLANLYSREALDETVRIAELCDFSLDELRYEYPSEVIPEGE--- 303 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR + G + R QG + +++ EL++IA M++ YFL V D + Sbjct: 304 -TPASYLRKETYLGAQRRFPQGV------PTVVQSQIEHELDLIAAMRYESYFLTVYDIV 356 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ +I GRGS A S Y L IT++DP R +LLFERF++ +R PD D+DF Sbjct: 357 RFARSQHIL-CQGRGSAANSAVCYCLGITEVDPERGNLLFERFISKERGEPPDIDVDFEH 415 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EV++Y+ KYG R A S ++++ALRD+G+AL + V+++ + Sbjct: 416 QRREEVVQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLGLVEQVARAHHWWDN 475 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + P + ++ L G RH S H G VI LS+LVP Sbjct: 476 AKDLAERFTE----AGLAPESPIAKQWANLAHALRGFPRHLSQHVGGFVISHSKLSRLVP 531 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + R V +++ +E GL+K D L L L+ ++++LDF+++ G ++ IP Sbjct: 532 IERASMEGRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRALDFVSEGTGEPFEMQDIPK 591 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D ETY +++ T+G+FQ+ES L ++P+ D++ +SL RPGPI +V+ Sbjct: 592 EDPETYAMISKADTVGVFQIESRAQMTMLPRLKPERFYDLVIEISLIRPGPIQGGMVHPY 651 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720 R+ G E + P ++ L T GV I+QEQVMQ+A L +G++ EAD LRR+M Sbjct: 652 LRRRQGIEPVSYPSPEMEAALSRTLGVPIFQEQVMQVAMLAAGFTPGEADQLRRSMAAWK 711 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K + + +R + G + G + A +IF+ + F +YGF +SHAA++AV+ Y ++W+K Sbjct: 712 RKGGLGQYYDRILDGMTSRGYTVEFAESIFKQIEGFGEYGFPESHAASFAVLVYASSWLK 771 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833 H+P FLAA + + QDAR+ ++++ V+ + Sbjct: 772 RHHPAAFLAALLNSQPMGFYSPSALVQDARRHGVRVLSVDVSVSDWAATLESEATDGEAG 831 Query: 834 -----------------------------RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864 + LA +G+ I EA A +PF+S Sbjct: 832 GGVGATVGDGARKSKVDKAAGRDPIDRARAVRLGLAQARGLSQEAGWRIEEARAVRPFES 891 Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 + D R LNR L++L AGAL R + L + A +K+ Sbjct: 892 VADLALRAS---LNRHDLDALAQAGALASLAGHRREALWQV-----VASLPDKDLLRG-- 941 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 + + + ++ R LG HPL + + L E Sbjct: 942 ---------AAIEEEAVALPAPREAEDIVSDYRALGLTLGRHPLSLLRERLAAQRFMTAE 992 Query: 985 ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 A G R +V +Q+ T G + +VT + +P Sbjct: 993 ILNAYPNGRLARACGIVTVRQRPGTASG--VVFVTLEDETGNVNVIVWP 1039 >gi|260890684|ref|ZP_05901947.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254] gi|260859562|gb|EEX74062.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254] Length = 1185 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 357/1084 (32%), Positives = 579/1084 (53%), Gaps = 85/1084 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL++H+ YSLLEG ++ ++K A+AITDT ++F A+EF +K AGI+PI Sbjct: 5 FVHLKLHTEYSLLEGVGKIDEYVEKAKKIGVKALAITDT-SMFGAIEFFKKCKNAGIKPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG ++ +D + + S+ LL GY+ L +L S Y + + Sbjct: 64 IGLEVFLDGLEKVGE-----------FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNK 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L++ ++ L +L+GG + + + + + + K FGD ++ + Sbjct: 112 IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVIEKLGKDFGDNFFIEVPAVE 170 Query: 191 GYDRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ R + + ++ V TN+ + + +D ++ ++ + + + Sbjct: 171 RLEKAR-KMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSE 229 Query: 250 ---------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ ++ E + N +I C+ + H P++ + Sbjct: 230 ILYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIVENCNVDFEFHHFKFPKYSLPQ- 288 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-------------------------- 334 E+ LRN GL + + +++ Sbjct: 289 ---NVSEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIEKEIAKDEIAGQKLKEV 345 Query: 335 -----------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 ++ +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AG Sbjct: 346 KIREELLKHNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAG 405 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 S+ +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E V Sbjct: 406 SIVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYV 465 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503 A IITFG+L+A+ A+RDVGR L + +VD++ K+I P + A+ + R+ Sbjct: 466 AHIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMI---PFNTELKDALNNIPEIRKMYE 522 Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563 D + R+++ S KLEG RHAS HAAG+VI LS +P Y D ++ + TQ+ MK + Sbjct: 523 TDREIRRVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKEL 582 Query: 564 EKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622 E+ G++K DFLGLK LT+L+K+++ +R +K+DL+ I +D +TY LLT T+G+FQ Sbjct: 583 EELGILKMDFLGLKNLTILRKTVENIEKRRKIKIDLNDISLNDEKTYELLTKADTMGVFQ 642 Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDP 680 ES+G+R ++ M+ + EDIIAL++LYRPGP+ + + + N KN K +I I + Sbjct: 643 CESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNKTEIKYIDNSLKY 702 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +L+ET G+I+YQEQVM+I ++ YSL EAD LRRA+GKK E M K +E+F++ A KNG Sbjct: 703 ILEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNG 762 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 + A I++L+ KF YGFNKSH+AAYA+I Y TA+ K +YP+EF AA MT E+ N++ Sbjct: 763 VLSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKVNYPLEFFAAIMTTEVHNLD 822 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTA 850 + F +AR+ I I P VN DF++ +N+ I + L AIKGVG Sbjct: 823 RFVVFVNEAREKGINIFLPDVNLSDYDFEIEENQADNENFGKVGIRFGLFAIKGVGAALI 882 Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910 I + + F S +DF R+ + ++ LESL+ +GALD +R + +S+D + + Sbjct: 883 NEIKKERKNGKFVSYKDFGYRMKQNGITKKQLESLILSGALDGLDGNRFEKYKSIDKVLE 942 Query: 911 YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970 Y+Q ++ + +F +K D +EK V +NE+ LG Y S HPL+ Sbjct: 943 YSQKKYESEEDFQLILFGGKKEISVD-FQMEKSEEFPQKVLLQNEKEYLGIYVSSHPLNE 1001 Query: 971 YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEA 1029 K ++ + E + +R+ +V + ++ TR G + + K E Sbjct: 1002 KKNLINIISHNKISEI-SQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKSIEV 1060 Query: 1030 NFFP 1033 FP Sbjct: 1061 ICFP 1064 >gi|257125251|ref|YP_003163365.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049190|gb|ACV38374.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1185 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 356/1090 (32%), Positives = 580/1090 (53%), Gaps = 87/1090 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 +E FVHL++H+ YSLLEG ++ ++K A+AITDT ++F A+EF +K Sbjct: 1 MENK--FVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDT-SMFGAIEFFKKCKN 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PIIG ++ +D + + S+ LL GY+ L +L S Y Sbjct: 58 AGIKPIIGLEVFLDGLEKVGE-----------FSLTLLAKNQNGYKNLSKLSSISYSR-F 105 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + +I L++ ++ L +L+GG + + + + + + K FGD ++ Sbjct: 106 TRNRNKIKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFI 164 Query: 185 NLQRHRGYDRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + ++ R + + ++ V TN+ + + +D ++ ++ + + + Sbjct: 165 EVPAVERLEKAR-KMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTE 223 Query: 244 DRPRVT---------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++ ++ E + N +I C+ + H P+ Sbjct: 224 KSENSEILYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPK 283 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-------------------- 334 + + E+ LRN GL + + +++ Sbjct: 284 YSLPQ----NISEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAG 339 Query: 335 -----------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377 ++ +R ++EL +I +M ++GYF+IV DFI+++++N + VGPG Sbjct: 340 QKLKEVKIREELLKNNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPG 399 Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437 RGS AGS+ +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NK Sbjct: 400 RGSAAGSIVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNK 459 Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497 YG E VA IITFG+L+A+ A+RDVGR L + +VD++ K+I P + A+ + Sbjct: 460 YGAEYVAHIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMI---PFNTELKDALNNIPE 516 Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557 FR+ D + ++++ S KLEG RHAS HAAG+VI LS +P Y D ++ + TQ Sbjct: 517 FRKMYGTDREIKKVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQ 576 Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKG 616 + MK +E+ G++K DFLGLK LT+L+K+++ +R K+ L+ IP +D +TY LLT Sbjct: 577 YQMKELEELGILKMDFLGLKNLTILRKTVENIEKRRKTKIVLNDIPLNDEKTYELLTKAD 636 Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI 674 T+G+FQ ES+G+R ++ M+ + EDIIAL++LYRPGP+ + + + N KN + +I I Sbjct: 637 TMGVFQCESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYI 696 Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734 + +L+ET G+I+YQEQVM+I ++ YSL EAD LRRA+GKK E M K +E+F++ Sbjct: 697 DDSLKYILEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVT 756 Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794 A KNG+ A I++L+ KF YGFNKSH+AAYA+I Y TA+ K +YP+EF AA +T Sbjct: 757 NAEKNGVFSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITT 816 Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------NRIYYSLAAIKG 844 E+ N+++ F +A++ I I P VN DF++ + I + L A+KG Sbjct: 817 EVHNLDRFVVFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKG 876 Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 +G I + + F S EDF R+ + ++ LES + +GALD +R + +S Sbjct: 877 IGAALINEIKKERENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKS 936 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 +D I +Y+Q ++ + +F+ EK F K +EK V ENE+ LG Y S Sbjct: 937 IDKILEYSQKKYESEEDLQMILFSGEK-KFKGKFEMEKADEFPQKVLLENEKEYLGIYVS 995 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEP 1023 HPL+ K ++ + E + +R+ +V + ++ TR G + + Sbjct: 996 SHPLNEKKRLINIISHNKISEI-SQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDF 1054 Query: 1024 AKEYEANFFP 1033 K E FP Sbjct: 1055 QKNIEVVCFP 1064 >gi|51473946|ref|YP_067703.1| DNA polymerase III subunit alpha [Rickettsia typhi str. Wilmington] gi|81826280|sp|Q68VX1|DPO3A_RICTY RecName: Full=DNA polymerase III subunit alpha gi|51460258|gb|AAU04221.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 1180 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 406/1080 (37%), Positives = 602/1080 (55%), Gaps = 78/1080 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F+HL+ SSYS LE AL++ +++ + PA+ ++D NLF +LEF+ A +Q Sbjct: 3 SEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKKLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N+ I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIQYDINV------------FAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L + EGLI L + G + + + A + + GDR Y + R Sbjct: 111 DHINFEDLIKY-QEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +Q+A +P+VATN LF + + AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y K+ +EM +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFKSPAEMKKLFSDLPNAIQNTVNLRERCYF-----AAHPNPPMLPNFSTQDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 +R A GL RL A+ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TYLIRKYAKEGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV +KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QAI + A + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G+++D + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEIDFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 -----------------------------------GDNRIYYSLAAIKGVGTTTARHIME 855 ++ I ++L AIKGV + + + Sbjct: 825 KSSDTVITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTD 884 Query: 856 ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914 F S+ DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ Sbjct: 885 ERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTS 944 Query: 915 VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974 + + + ++ K + L + + + E +G + S HPL Y+ I Sbjct: 945 YHQEQESNQFSL---IKVSSLSPTILVSSNYADKNTLAFYEFESMGLFISNHPLTEYQEI 1001 Query: 975 LRKMGIKGYEESVA-TIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 ++ I + G N + LA ++ K + + +G R + S+P +E F Sbjct: 1002 FSRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELTIF 1060 >gi|15604610|ref|NP_221128.1| DNA polymerase III subunit alpha [Rickettsia prowazekii str. Madrid E] gi|6226600|sp|O05974|DPO3A_RICPR RecName: Full=DNA polymerase III subunit alpha gi|3861305|emb|CAA15204.1| DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia prowazekii] gi|292572428|gb|ADE30343.1| DNA polymerase III alpha chain [Rickettsia prowazekii Rp22] Length = 1182 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 405/1082 (37%), Positives = 599/1082 (55%), Gaps = 80/1082 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ + PA+ ++D NLF +LEFS A +Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L + EG+I L + G + + + A + + GDR Y + R Sbjct: 111 EHIGFEDLIKY-QEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E+ +Q+A +P+VATN LF + + AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y K+ +EM +FSDLP A++NT+ + RC F A + E Sbjct: 230 VSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYF-----AAHPNPPMLPNFSTQDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 +R A GL RL A+ + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QAI + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D +D+ + ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G+K+D + FDD +TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L++P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS + A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824 Query: 831 -------------------------------------GDNRIYYSLAAIKGVGTTTARHI 853 ++ I ++L AIKGV + + Sbjct: 825 KSSNTVITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLV 884 Query: 854 MEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912 + F S+ DF R+ K +N ++LE+L+ AG D +R+QL S+ + Y+ Sbjct: 885 TDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYS 944 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 + + + ++ K + L + + E +G + S HPL Y+ Sbjct: 945 TSYHQEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFLSNHPLTEYQ 1001 Query: 973 PILRKMGIKGYEESVA-TIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 I ++ I + G + LA ++ K + + +G R + S+P +E Sbjct: 1002 GIFSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELT 1060 Query: 1031 FF 1032 F Sbjct: 1061 IF 1062 >gi|308371322|ref|ZP_07424578.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu003] gi|308372518|ref|ZP_07428948.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu004] gi|308376093|ref|ZP_07446045.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu007] gi|308377322|ref|ZP_07441858.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu008] gi|308378295|ref|ZP_07482143.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu009] gi|308329123|gb|EFP17974.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu003] gi|308332959|gb|EFP21810.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu004] gi|308344313|gb|EFP33164.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu007] gi|308348245|gb|EFP37096.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu008] gi|308352970|gb|EFP41821.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu009] Length = 1091 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 284/1038 (27%), Positives = 484/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 54 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 114 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +V T + F + A+ + Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 344 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 345 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 399 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 517 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 518 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 920 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 964 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 965 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1022 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1023 TFINLEDETGMVNVLCTP 1040 >gi|308373723|ref|ZP_07433455.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu005] gi|308336574|gb|EFP25425.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis SUMu005] Length = 1098 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 284/1038 (27%), Positives = 484/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 61 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 121 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A A++ L F R+ + Sbjct: 175 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +V T + F + A+ + Sbjct: 235 LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 295 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 351 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 352 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 406 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 465 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 524 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 525 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 570 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 630 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 690 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 750 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 810 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 870 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 927 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 971 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 972 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1029 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1030 TFINLEDETGMVNVLCTP 1047 >gi|186476725|ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815] gi|184193184|gb|ACC71149.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815] Length = 1049 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 260/1039 (25%), Positives = 447/1039 (43%), Gaps = 66/1039 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S+++ L+GA + ++ + +AITD +L + A G+ Sbjct: 9 PAYAELFCLSNFTFLQGASHAEELAERASQLGYSGLAITDECSLAGVVRAHVAAKEKGLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG + D ++LL EGY L EL++ K Sbjct: 69 LVIGSYFRLRNADGT-----------PAFGLILLAQNREGYGNLSELITLARTR-APKGE 116 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L + + + F + V + ++ + F R +V L Sbjct: 117 YRLTPHDLSRPDRENAHLRGMPDCLAILVPD--FPANEAVLDAQIEWLDETFQGRAWVGL 174 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKD 244 H R D V +A +P+VA + + D + A+ V Sbjct: 175 VLHQRAMDDIHRGSVEYVANQQNVPVVALGHVVMHVRSRKPLQDTMTAIRVGRPVHECGY 234 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + +L++R + +++ D TV L E Sbjct: 235 ELAPNAEQHLRSRLRIANLYPDH------TVRETISVLSRCAFSLDQLRYEYPDELVPAG 288 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 LR + G + R G + +Q+++ EL +IA + + YFL V D + Sbjct: 289 YTPTQYLRQETYIGAQHRFPSG------IPFNVQQQIEHELALIADLGYEPYFLTVYDIV 342 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 343 RYARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEH 401 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI+Y+ KYG +R A + + + ALR+ G+AL + VD + K Sbjct: 402 QRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQLVDTVAKSHHWFDT 461 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 L+ + P + ++ +L RH S H+ G VI L++LVP Sbjct: 462 SHDLLKRFEES----GLDPEKPLIQAWARLAAQLLNFPRHLSQHSGGFVISRGKLTRLVP 517 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 + +D V +++ +E GL+K D L L L+ ++++LD +A R + ++ IP Sbjct: 518 VENAAMADRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRTLDLVADRTGERFEMQDIPA 577 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVY 661 +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI + Y Sbjct: 578 EDKATYDMISNADTIGVFQIESRAQMSMLPRLRPQKFYDLVIEVAIVRPGPIQGGAVHPY 637 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720 R+ E + + LK T GV I+QEQVMQ+A L +G++ EAD LRRAM Sbjct: 638 LRRRQKLEPVSYPSEQLKIALKRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAMAAWK 697 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K ++K +R ++G + G ++ A IFE + F +YGF +SHAA++A++ Y ++W+K Sbjct: 698 RKGGLEKYYDRIVNGMRERGYEQSFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLK 757 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834 H P FLAA + + + QDAR+ ++++P V D + Sbjct: 758 CHEPEAFLAAMLNSQPMGFYSPSQLVQDARRHGVRVLPVDVTVSGWDSSLETIRGQQRPA 817 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 + L+ ++G+ A I A A +PF S+ D R +LNRR L L A AL Sbjct: 818 VRLGLSLLRGMKDGAAERIENARAVRPFRSVHDLARRA---QLNRRDLHVLADANALSSL 874 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R + L ++ + ++ + + + Sbjct: 875 AGNRREALWH--SVAAVPDKDMLSVAAVQDD--------------TPELGAPSEAQDIVA 918 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + R +G HPL++ +P+L + + G R +V +Q+ T KG Sbjct: 919 DYRSVGLTLGRHPLELLRPVLLEQRLLPASTLRDYRNGRLARGCGIVTVRQRPGTAKG-- 976 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + +VT + +P Sbjct: 977 VLFVTIEDETGNVNVIIWP 995 >gi|229489515|ref|ZP_04383378.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] gi|229323612|gb|EEN89370.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis SK121] Length = 1072 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 282/1032 (27%), Positives = 468/1032 (45%), Gaps = 61/1032 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + + + F++ A G++ + Sbjct: 38 YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 97 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D + T P +++L EGY+RL ++ +L K ++ Sbjct: 98 FGAELSLD------SVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 151 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + +A + A L + FG +R+ V L H Sbjct: 152 YDYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAADALGDLVERFGAERVSVELTHH 211 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D R + + +LA H L VAT + F + + AV + + Sbjct: 212 GLAEDDERNAVLAELAREHGLRTVATTAAHFAAPPRRRLAMAMAAVRSRQSLDEAAGWLA 271 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +L++ +EM ++FS PEA+ ++ R C+F L++ AP LP F E Sbjct: 272 PTGGAHLRSGAEMAALFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HTE 327 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R A ++L+ EL +I + F GYFL+V D + + Sbjct: 328 ASWLRELTMVGALERYGPP-----EGAPKAYKQLEHELAIIEGLNFPGYFLVVHDIVSFC 382 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+I GRGS A S YA+ IT++DP+R LLFERFL P+R PD D+D DRR Sbjct: 383 KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESDRR 441 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V KYG AQ+ + + K+++RD+ RAL Q D K + Sbjct: 442 EEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGGIDK 501 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 502 N--------------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPVEW 547 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 ++ V Q++ AGL+KFD LGL L+ L +D +A+ + VDL+ + + Sbjct: 548 ARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLSET 607 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 608 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 667 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +N E + HP ++ L+ T GV ++QEQ+MQ+A ++G++ SEAD LRRAM K+ E Sbjct: 668 RNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRSTE 727 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ + RF G +GI +A I+E L FA++GF +SH+ ++A + + ++W K H Sbjct: 728 KMEQLRARFYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLH 787 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F A + + + DAR+ +Q+ +N V + L Sbjct: 788 HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLGLG 847 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++ +G A I+E PF S D RV+ L ESL AGAL FG SR Sbjct: 848 EVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAGALASFGISRR 904 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + A +R +T + + Sbjct: 905 EALWA----AGAAAGERPDRLPG-----------IGASVTAPTLPGMSDVELAAADVWAT 949 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P +P L +G+ + G+ + + V +Q+ T G + ++ Sbjct: 950 GVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1007 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1008 LEDETGMVNVVC 1019 >gi|218290516|ref|ZP_03494625.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239419|gb|EED06615.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1039 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 311/1033 (30%), Positives = 497/1033 (48%), Gaps = 52/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YS L+GA S+ ++ + AA PA+A+TD N + EF + A G++PI Sbjct: 2 FVHLHCHSPYSFLDGASSIETLVAQAAAQGMPALALTDRNTIAGQPEFHRLAALYGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L ++ +V+L A+G++ L EL++RM++ + + R Sbjct: 62 AGAELTLEDGS----------------QLVVLAEHAKGFRHLCELLTRMHVDARDRADPR 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L E EGL++L+GG G + RA + A + + ++ +FGDR Y+ Sbjct: 106 LREADLFER-NEGLLILSGGLRGFVQRALARRAYGDARRFVERYRDVFGDRFYLEWTADG 164 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R ++ LA +P VA S E+ HDVL + + R Sbjct: 165 LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL + +E + F+ P A+ TVEIA RCS + + D + Sbjct: 225 NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPA----EGPLFPEYRDASGRGGV 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L G G + + R RL+ EL +I + ++ YFL+V D +++A+ Sbjct: 281 EFLEQLVWRGARE-------RYGKVSPELRIRLEHELAIIRDLGYADYFLVVWDIVRYAR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A SV AY L +TD+D L +LLFERFL+ +R PD DIDF DRRD Sbjct: 334 SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +YG +RVA++ T+ + +A++A+R+VGR +P +D+L K IP Sbjct: 393 EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ R+ + + +L +S+++ G RH TH GIVI PL ++ + Sbjct: 453 EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRHFGTHTGGIVISGEPLMKVTSLQ-P 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 S +T ++ + +E GL+K D L L+T+ ++ +L R V IP DD T Sbjct: 512 SASGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAVDY--DHIPMDDEAT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + + T+G+FQLES R + + +ED++A V+L RPGPI +V + Sbjct: 570 FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629 Query: 669 --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725 E + +HP ++P+L +T GV+++QEQV++IA ++G++ EAD LRR M + + EM Sbjct: 630 GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++ ERF+ A G+ A +F + +A YGF ++HAAA+A +Y+TA++ H+P Sbjct: 690 EQIGERFVQKAVHQGVPLETAQTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F AA + C +AR+ ++I+P +N D V + I I+ Sbjct: 750 SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809 Query: 845 VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLL 902 AR ++E A PF L D +RV + + E L+ AGA D R +LL Sbjct: 810 FSERVARALVEERQASGPFRCLSDAVTRVP--QADALHFERLIRAGAFDRVESRDRRELL 867 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959 L + EK +F D I L + + + R +E VL Sbjct: 868 WQLPRLL--VLRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G SGH L +Y+ LR G E G +++A + + + T+ G + + T Sbjct: 921 GVGVSGHWLSLYREALRSEGYCTLAEVGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980 Query: 1020 FSEPAKEYEANFF 1032 + +A F Sbjct: 981 LEDETGIADAVMF 993 >gi|295695654|ref|YP_003588892.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411256|gb|ADG05748.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1022 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 291/1028 (28%), Positives = 483/1028 (46%), Gaps = 57/1028 (5%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL HS +S L+GA + ++D + A+A+TD + + + F + A GI+PI Sbjct: 2 VHLHAHSYFSFLDGASAPEELVDIASQLGISAMALTDRDTVAGLVPFHRAAERVGIRPIS 61 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++ ++ + +L A+GY L L+++ +L + R Sbjct: 62 GSEITMEDGTV----------------LTVLAENAKGYAELCTLLTKAHL-SHPRGEPRT 104 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR-H 189 L + EGLI+L+G G I +Q A + + G DR ++ +Q Sbjct: 105 LYQDLVK-HREGLIVLSGDRRGRIPTLLLQKQNQKAREMAEWLRDGLGKDRFFLEIQDSF 163 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248 ++ ++ +LA T ++ + AT++ + S + + +DVL + + T + R Sbjct: 164 TPGSQHLTGRLCELADTLDIGVTATHDIHYASPDQFPIYDVLTCIRNQTGLESPHPERPL 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL + EM F P+AL +EIA RC L + Sbjct: 224 NGKAYLLSPEEMTLRFKRRPDALHRAMEIAERCQVSLDL----SLPRHPAFPHGPGDTPM 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR G G + R+RL+ EL +I + ++ YFL+V D +Q+A+ Sbjct: 280 AILRRLTEEGAIR-------RYGSLTPEIRRRLEHELAIIETLGYADYFLVVWDVVQYAR 332 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 K I GRGS A S AY L ITD+D LLFERF++ +R PD D+DF RRD Sbjct: 333 KKGIRYA-GRGSAADSAVAYCLGITDVDAAGRGLLFERFISLERGEKPDIDVDFDARRRD 391 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV YV N+YG + VA + T+ + Q ++A+R+VGR + P +DRL K IP Sbjct: 392 EVAAYVYNRYGEDHVAAVCTYQTFQIRSAIREVGRVMGFPPPLLDRLAKRIPYMVRAGEL 451 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 A+ R+A + V +L + L + RH TH G+VI PL+ + + R Sbjct: 452 GAALERFPELRDAGIEQKQVWQLFHLVSALVDIPRHIGTHLGGLVISRDPLTTVTSLQR- 510 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 + +T F+ + +E GL+K D L L+TL+ ++ ++ L + G +D IP DD +T Sbjct: 511 SAKGVIITPFDKRAVEDVGLMKLDLLSLRTLSAVEDTVQLLHRDGKPIDPEDIPLDDPDT 570 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + + T+G+FQLES R ++PD +ED++A V+L RPGPI +V + + Sbjct: 571 FAAIGEGRTIGVFQLESPAQRALQVRLKPDHLEDLVASVALIRPGPIKGNMVEPFLERRR 630 Query: 669 --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEM 725 + IHP + P+L +T GVI++QEQV++I ++G++ EAD LRR M EM Sbjct: 631 GNAEFHYIHPALKPILDKTYGVILFQEQVIEIVTAVAGFTPGEADRLRRVMSHHRSLREM 690 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++ E F+ + G+S+ A I+ + +A YGF ++HAAA+A +Y+TA++ HYP Sbjct: 691 EEIGELFLEKSMARGVSRETAEQIYNYIKGYASYGFCEAHAAAFAATAYRTAYLARHYPA 750 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 + A + I C +A + ++I+PP VN ++ I L IKG+ Sbjct: 751 AYYAGLLNQFPMGYYPIHVLCSEAHRRGVEILPPDVNNSETGCRLEKGNIRLGLNLIKGL 810 Query: 846 GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904 I+E PF S E+FC R+ +R +LE+L+ GA D +R QLL Sbjct: 811 PREEVARIIEDRERHGPFASPEEFCLRIHP---SRTLLENLILTGAFDRLYPNRRQLLWY 867 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 L+++ + + + R +E R++ S Sbjct: 868 LNDLLQ---------------LSGVDIHWTQILPPPGDSGDFTLKERLFHEYRLIQVGLS 912 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 GH +++++P+LR + + G + A ++V + T G + + + + Sbjct: 913 GHLMELFRPVLRTRRFLPVVDL-ESFEGKEVWTAGILVRPHRPPTPSGKTVVFFSLEDET 971 Query: 1025 KEYEANFF 1032 +A F Sbjct: 972 GIVDAVMF 979 >gi|254247148|ref|ZP_04940469.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] gi|124871924|gb|EAY63640.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184] Length = 1067 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 268/1037 (25%), Positives = 443/1037 (42%), Gaps = 62/1037 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S+++ LEGA ++ + A IAITD +L + A Sbjct: 27 PAYAELFCLSNFTFLEGASHAEELVKRAAQLGYSGIAITDECSLAGVVRAHVAAKDLNFP 86 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG + D ++LL EGY L EL++ + Sbjct: 87 LVIGSYFKLTQAD-----------SSPALDLILLAQNREGYGNLSELITLARMRSPKGGY 135 Query: 129 VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 L+ E L + G + I + F + + ++ + F R +V L Sbjct: 136 CLTPQDLLKPEKAYAHLRGMPGCLAILIPK--FPAKPEALDAQVEWLLETFPGRAWVGLC 193 Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H R D V +AY + +P+VA + D + A+ V + Sbjct: 194 LHQRAMDNPHAGVVEHIAYGNGVPVVAVGHVTMHVRSRKPLQDTMTAIRIGKPV-AECGY 252 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + P+ RS M P AL TV I RC F L P + Sbjct: 253 ELAPNAEQHLRSRMRLAHLHHPNALNETVAILSRCGFSLDELRYEYPDELVPAG----LT 308 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR + G R + G + + +L+ EL +I + + YFL V D +++ Sbjct: 309 PTEYLRQETYIGAHRRFSNG------IPLNVQAQLEHELELITELSYEPYFLTVYDIVKF 362 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT++DP R ++LFERF++ +R S PD D+DF + Sbjct: 363 ARSEGIL-CQGRGSAANSAVCYCLGITEVDPARSTMLFERFISRERNSPPDIDVDFEHQK 421 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+ V++Y+ KYG +R A + +A+ LRDVG+A+ + VDR+ K Sbjct: 422 REIVMQYIYRKYGRDRAAIAAAVSTYRARGVLRDVGKAVGVDAQIVDRVAKAHHWFDGTA 481 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 L+ ++ + P + ++ +L G RH S H+ G VI LS+LVP+ Sbjct: 482 DLLERFSES----GLDPSAPIIQTWASLAAQLCGFPRHLSQHSGGFVISRGKLSRLVPIE 537 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 D V Q++ +E GL+K D L L L++++++LD + RG ++ IP +D Sbjct: 538 NAAMQDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDLISLHRGEPFEMQDIPSED 597 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 ETY +++ T+G+FQ+ES + L ++P D++ V++ RPGPI + Y Sbjct: 598 PETYDMISNADTVGVFQIESRAQQSMLPRLKPRTFYDLVIEVAIVRPGPIQGGAVHPYLK 657 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722 R+ G + + ++ L T GV I+QEQVMQ+A L +G+S EAD LRRAM K Sbjct: 658 RRQGIDPVSYPSKDLETALARTLGVPIFQEQVMQVAILAAGFSPGEADGLRRAMAAWKRK 717 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 ++ +R +SG G + A IF + FADYGF +SHAA++A++ Y ++W+K H Sbjct: 718 GGLEPYHDRLVSGMLMRGYEREFAEAIFAQIKGFADYGFPESHAASFALLVYVSSWLKCH 777 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------IY 836 P FL + + + + QDA++ + ++P V + + + Sbjct: 778 EPEAFLVSLLNSQPMGFYSPSQLIQDAKRHGVTVLPADVAISNWESSLEYPEAGCRPVVR 837 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L+ + G+ A I A A +PF S D R +L+R L L + AL Sbjct: 838 LGLSLLHGMRAEAADRIEMARAVEPFSSTIDLARRA---QLDRHDLHVLARSDALASLAG 894 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R L +++ ++ A + +++ Sbjct: 895 GRRSALW--ESVVAAPDK----------DLLASANVVDET----PDLGWASEGEEIQSDY 938 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 + +G HPL + +P+L + G R +V +Q+ T KG + Sbjct: 939 QSMGLTLRRHPLALLRPMLHAKKLMPAATLNTYPNGRLARACGLVTVRQRPGTAKG--VI 996 Query: 1017 WVTFSEPAKEYEANFFP 1033 +VT + +P Sbjct: 997 FVTLEDETGNVNVIIWP 1013 >gi|258511002|ref|YP_003184436.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477728|gb|ACV58047.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1039 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 308/1033 (29%), Positives = 497/1033 (48%), Gaps = 52/1033 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS YS L+GA S+ ++ + AA PA+A+TD N + EF + A A G++PI Sbjct: 2 FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L ++ +V+L A G++ L EL++RM++ + + R Sbjct: 62 AGAELTMEDGS----------------QLVVLAEHATGFRHLCELLTRMHVDARDRADPR 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L E +EGL++L+GG G + RA + A + + ++ +FGDR Y+ Sbjct: 106 LREADLFER-SEGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADG 164 Query: 191 GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R ++ LA +P VA S E+ HDVL + + R Sbjct: 165 LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 YL + +E + F+ P A+ TVEIA RCS + + D + Sbjct: 225 NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPA----EGPLFPEYRDASGRGGV 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L G G + + + RL+ E +I + ++ YFL+V D +++A+ Sbjct: 281 ELLEQLVWQGARK-------RYGKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVRYAR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A SV AY L +TD+D L +LLFERFL+ +R PD DIDF DRRD Sbjct: 334 SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +YG +RVA++ T+ + +A++A+R+VGR +P +D+L K IP Sbjct: 393 EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +A+ R+ + + +L +S+++ G R+ TH GIVI PL ++ + Sbjct: 453 EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQ-P 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 S +T ++ + +E GL+K D L L+T+ ++ +L R V IP DD T Sbjct: 512 SASGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAVDY--DHIPMDDEAT 569 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 + + T+G+FQLES R + + +ED++A V+L RPGPI +V + Sbjct: 570 FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629 Query: 669 --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725 E + +HP ++P+L +T GV+++QEQV++IA ++G++ EAD LRR M + + EM Sbjct: 630 GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++ ERF+ A + G+ A +F + +A YGF ++HAAA+A +Y+TA++ H+P Sbjct: 690 EQIGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844 F AA + C +AR+ ++I+P +N D V + I I+ Sbjct: 750 SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809 Query: 845 VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLL 902 AR ++E F SL D R+ + + E L+ AGA D R +LL Sbjct: 810 FSERVARALVEERQAFGSFRSLADAVMRLP--QADALHFERLIRAGAFDRVESRDRRELL 867 Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959 L A EK +F D I L + + + R +E VL Sbjct: 868 WQLPRWL--ALRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G SGH L +Y+ LR G E+ G +++A + + + T+ G + + T Sbjct: 921 GVGVSGHWLSLYREALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980 Query: 1020 FSEPAKEYEANFF 1032 + +A F Sbjct: 981 LEDETGIADAVMF 993 >gi|170721609|ref|YP_001749297.1| error-prone DNA polymerase [Pseudomonas putida W619] gi|169759612|gb|ACA72928.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619] Length = 1026 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 289/1036 (27%), Positives = 457/1036 (44%), Gaps = 76/1036 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S +L + A+AITD L + Q A A Sbjct: 2 SAPGYAELHCLSNFSFQRGASSAEELLRRAREQGYQALAITDECTLAGIVRAWQAAKAQQ 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+ I+G ++ + P +VLLV GYQ L L++R Q K Sbjct: 62 IRLIVGSEVRLHNG----------------PKLVLLVQDLSGYQNLCALITRARRRAQ-K 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 S ++ L+E+ GL+ L +S +A + +FG+RL++ + Sbjct: 105 GSYQLFPDDLRELHR-GLLALW----------LAEDSRDLA--TGQWLQGVFGERLWLGV 151 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 HRG D R +++ LA + VA + D + A+ V++ R Sbjct: 152 HLHRGSDDETRLARLRGLAGQLGIRAVACGDVHMHVRGRRALQDCMTAIRQHCSVAEAGR 211 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + R+ + L T+ IA RC F L PR + E + Sbjct: 212 FLF-ANGERHLRTLEQLAELYPADLLSETLCIAERCQFDLGELRYQYPRELVPEG----Q 266 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR GL R G + R+ L EL +IA + + YFL V D + Sbjct: 267 TPASWLRQLCERGLAHRWPSG------PSDKVREVLAKELALIAELGYESYFLTVHDIVA 320 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF D Sbjct: 321 FARSQHIL-CQGRGSAANSVVCFVLGITELDPMKHRLLFERFLSRERNEPPDIDVDFEHD 379 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+YV +YG R A + A A+RDV R L +P QVD L K Sbjct: 380 RREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDR 439 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 Q +A+ PS+ R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 440 IPDEQRLAE----AGFEPGSPSLRRILVLAAQLIGFPRHLSQHPGGFVISEQPLDHLVPV 495 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 ++ V Q++ ++ GL+K D L L L+ L++ D + Q + L+ IP + Sbjct: 496 ENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLMQQHRGRHLTLATIPAE 555 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 556 DPATYAMISRAETMGVFQIESRAQMAMLPRLKPSTFYDLVIEVAIVRPGPIQGDMVHPYL 615 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R+ +E + + + + T GV ++QEQVM++A + + YS EAD LRR+M + Sbjct: 616 RRRLKQEPVTYPSLKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAAWKR 675 Query: 723 EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + +ER + G +NG A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 676 HGGLEPHRERLVQGMLRNGYDLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836 H P F A + + Q+AR+ I++ P V D + I Sbjct: 736 HEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVGHSQWDCTLEPVAEGALAIR 795 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L I+G AR + A A +P+ +ED C R L+ R L AGAL Sbjct: 796 LGLRQIRGFAEADARRLEAARARRPWRDVEDLCLRA---GLDSRARARLADAGALRALAR 852 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R Q + + +FA + T + L + Sbjct: 853 DRHQARWQVAAV------------QPQLPLFAELQATPEAAVALP---APTVGEDLVADY 897 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 LG HPL + + LR +G + +E G+ + +A +VV +Q+ +T G + Sbjct: 898 ATLGTTLGPHPLTLLRSRLRVLGCRSSQELAGVEHGDAVAVAGLVVGRQRPQTASG--VT 955 Query: 1017 WVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 956 FVTLEDEFGMVNVVVW 971 >gi|295697007|ref|YP_003590245.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295412609|gb|ADG07101.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 991 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 366/958 (38%), Positives = 560/958 (58%), Gaps = 46/958 (4%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL VHS+YSLL G ++ + AD P +AITD NL++A+ F + A AGI+PI+G Sbjct: 2 HLHVHSAYSLLRGVCRPEALIQRAVADGMPGVAITDWANLYAAIRFVRLAKEAGIRPILG 61 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 Q+ + + + + P++VLL + +G++ LI LVS + + Sbjct: 62 AQIPLVEESVQRPSRGDP------PAVVLLAESEKGFRGLIRLVSLAH------DGPELG 109 Query: 133 LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 +SW GL +L+GG+ GP+D A ++ A L F ++FG +R ++ +Q Sbjct: 110 VSWEAVTAHAPGLFLLSGGAEGPVDAALARGDTERARDWLRRFVEVFGPNRAWLEVQD-D 168 Query: 191 GYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G +R R S ++V L + L VAT + ++ ED V+ A+ P Sbjct: 169 GSERGRLSHYRLVSLGEEYGLLPVATADVHYIDPEDAPLARVVQALRQG---DDGAPPPS 225 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + +EM + F+ LP+A+ +EIA RC L + +LP F E + + Sbjct: 226 PSPRWFASSAEMRARFAHLPQAVNAALEIAERCRVELPLGRVLLPSFDVPEGE----SPD 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL R+ Y+ RL+ EL+VIARM F+ YFLIV DFI++++ Sbjct: 282 GYLRRLCQEGLRQRVGDPV------PPSYKDRLEHELSVIARMGFASYFLIVWDFIRYSR 335 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +N I GPGRGS AGS+ AYAL IT +DP+R LLFERFLNP+R+SMPD DIDF +RR Sbjct: 336 ENGIATGPGRGSAAGSLVAYALGITGVDPVRHHLLFERFLNPERVSMPDIDIDFEDERRF 395 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV KYGH+RVAQIITFG++ A+AA+RD GR +P + VDR+ KL+P + Sbjct: 396 EVIEYVAQKYGHDRVAQIITFGTMAARAAIRDAGRVTGLPPALVDRVAKLVPASLGITLD 455 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ R R + V LL +++ LEGL RH STHAAG+VI L+ +VP+ R Sbjct: 456 QA-LVEEPRLRALMDENEQVRTLLTVAKGLEGLPRHTSTHAAGVVIAPSALTDVVPVQRT 514 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 +TQ++M +E GL+K DFLGL+TL++++ + +R + D +T Sbjct: 515 PEGG-LITQYDMASLEAVGLLKMDFLGLRTLSIIEHTRQLAGERLGHAVEIDEEYTDPKT 573 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y LL T G FQLESSG++ L +QP+C EDI+A++SLYRPGP++NI Y + K+G+ Sbjct: 574 YELLGRGDTDGCFQLESSGVKHVLRDLQPNCFEDIVAVISLYRPGPMENISRYIDAKHGR 633 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + HP ++P+L++T G+++YQEQ+MQIA ++G++L +ADVLRRA+GKK +E +++Q Sbjct: 634 VPVHYPHPDLEPILRDTYGIVVYQEQIMQIASRMAGFTLGQADVLRRAVGKKKREVLEQQ 693 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + F++G + G + +A +++L+ +FADYGFN+SHA AYAV+S++TA++K HYP EF Sbjct: 694 RAAFVAGCLRQGHPRDLAEELYDLIVRFADYGFNRSHAVAYAVLSWRTAYLKAHYPAEFF 753 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGT 847 A+ ++ M + +K+ ++ ++A Q I+++PPSV T F V D +I ++L AIK VG Sbjct: 754 ASLLSAAMASADKVAQYVEEAFQRGIEVLPPSVQTSGAGFTVSEDGKIRFALGAIKHVGQ 813 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + ++ A F SL DF SRVD + +RR +E+L+ AGA D G +R +LL L+ Sbjct: 814 AAVQAVLGARRAGTFRSLGDFLSRVDHRACHRRTVEALIRAGAFDELGENRDELLGRLE- 872 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + + W F E + S EN + +E+ ++G F+G Sbjct: 873 --RESHW---GGGGAQLTFFGEESPG-------RRASSENEQEKIRHEKELMGLTFTG 918 >gi|221215348|ref|ZP_03588313.1| error-prone DNA polymerase [Burkholderia multivorans CGD1] gi|221164780|gb|EED97261.1| error-prone DNA polymerase [Burkholderia multivorans CGD1] Length = 1049 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 292/1037 (28%), Positives = 470/1037 (45%), Gaps = 63/1037 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AAG+ Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L ELVS + + K S Sbjct: 70 LIIGSHFRLTAADGSPAIAFS-----------ALAMNRDGYGNLCELVSLGRMRGK-KGS 117 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L++ L L + I F + Q + ++ F ++FGDR +V L Sbjct: 118 YRLAPRDLEQPDAPFTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V ++A H +P+VAT+ L DVL ++ V + Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPV-SECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV +ARRC+F L P + D+ Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV-- 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G + R G D + +++ EL +IA + + YFL V D +Q Sbjct: 293 --ATYLREQTYIGAQRRFPAG------IPVDVQAQIEHELQLIAELNYEAYFLTVYDIVQ 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++N I GRGS A S Y L +T++DP R S+LFERF++ +R PD D+DF Sbjct: 345 FARQNGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ KYG +R A + + ++ALR+ G+AL + + VDR+ K + Sbjct: 404 RREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSR 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 LQ A+ P + + +L G RH S H+ G VI L++LVP+ Sbjct: 464 ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 D + Q++ IE G++K D L L L++++++LD + +RG +L IP + Sbjct: 520 ENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPSE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ +V+ Sbjct: 580 DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYL 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ G E + ++ LK T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ +R +SG + G + A IF + F +YGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLAA + + + QDAR+ ++++P VN D + + Sbjct: 760 HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRL 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896 + ++G+ A I A A +PF + D R +L+R L+ L A AL G Sbjct: 820 GFSLLRGMRADVAGRIELARAVRPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R A ++ + + + + + Sbjct: 877 NRR------------AALWLAAAAIPDRDLLRGTERDDA----VPALPQASEGKEIVTDY 920 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R +GF HPL + + L ++ E+ G R +V +Q+ T G + Sbjct: 921 RAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + + +P Sbjct: 979 FMTLEDETGQVNVILWP 995 >gi|120402538|ref|YP_952367.1| error-prone DNA polymerase [Mycobacterium vanbaalenii PYR-1] gi|119955356|gb|ABM12361.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium vanbaalenii PYR-1] Length = 1098 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 280/1037 (27%), Positives = 481/1037 (46%), Gaps = 60/1037 (5%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E S + L HS+YS L+GA + ++++ A AIA+TD + L+ + F++ A Sbjct: 58 ESSTPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAAREL 117 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 + + G +L + + P P P +++L EGY+RL ++ +L Sbjct: 118 DVATVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 171 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 K +R L E +LTG G + +A + AE L FG DR+ V Sbjct: 172 KGVLRYDFDALTEAAGGHWQILTGCRKGHVRQALSTGGPEAAEAALADLVDRFGPDRVTV 231 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242 L H D R + + LA L +VAT + F + A+ +++ Sbjct: 232 ELTHHGHPLDDERNAALAALAPRFGLGVVATTAAHFAEPARGRLAMAMGAIRARNSIDEA 291 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +L++ EM +F+ PE + E+ +C+F L + AP LP F + Sbjct: 292 AGYLAPLGGSHLRSGDEMARMFAHCPEVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 349 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E + LR+ + G R A +AQ ++ EL VI ++ F GYFL+V D Sbjct: 350 --HTESSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELAVIEQLNFPGYFLVVHD 402 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 ++ + NNI GRGS A S YAL +T++DP+ LLFERFL+P R PD DID Sbjct: 403 ITRFCRDNNILS-QGRGSAANSAVCYALKVTNVDPIANDLLFERFLSPARDGPPDIDIDI 461 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 D R+ I+YV +YG E AQ+ + + ++A+RD+ RAL Q D K + Sbjct: 462 ESDLRENAIQYVYQRYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQVSQW 521 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +A + ++++++++ L RH H+ G+VI DRP++ + Sbjct: 522 GN-------------LADATHVEDIPGPVVDLAKQISNLPRHMGIHSGGMVICDRPIADV 568 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VDL+ + Sbjct: 569 CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLAKL 628 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 629 DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVH 688 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 Y R+NG+E + HP ++ L++T GV ++QEQ+MQ+A +G++ +EAD LRRAM Sbjct: 689 PYIKRRNGQEAVTYDHPSMESALRKTLGVPLFQEQLMQLAVDCAGFTPAEADQLRRAMGS 748 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+ E+M + + RF G ++ +G++ +A I+E L FA++GF +SH+ ++A + + ++ Sbjct: 749 KRSTEKMRRLRGRFFDGMAELHGVTGDVAQRIYEKLEAFANFGFPESHSLSFASLVFYSS 808 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835 W K H+P F AA + + + DAR+ + + P VN + ++ + Sbjct: 809 WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNAGLAHATLENHGLDV 868 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L ++ +G A ++ PF SL D RV +L+ E+L AGAL CF Sbjct: 869 RLGLGGVRHIGDELAERLVGERKAHGPFTSLTDLTRRV---QLSVPQTEALATAGALGCF 925 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G +R + L + A +R + + Sbjct: 926 GITRREGLWAAG----AAATERPDRLPGVGS-----------SSHVPSLPGMTELELTVA 970 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + G +P + + L MG+ ++ ++ G + +A V +Q+ T +G Sbjct: 971 DVWATGVSPDRYPTEFLREDLDAMGVVPADQLLSLPDGTRVLVAGAVTHRQRPATAQG-- 1028 Query: 1015 IGWVTFSEPAKEYEANF 1031 + ++ + Sbjct: 1029 VTFMNLEDETGMVNVLC 1045 >gi|161506601|ref|YP_001573722.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC 17616] gi|189348876|ref|YP_001942071.1| DNA polymerase [Burkholderia multivorans ATCC 17616] gi|160346839|gb|ABX19922.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC 17616] gi|189339014|dbj|BAG48081.1| DNA polymerase [Burkholderia multivorans ATCC 17616] Length = 1049 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 291/1037 (28%), Positives = 470/1037 (45%), Gaps = 63/1037 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AAG+ Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L ELVS + + K S Sbjct: 70 LIIGSHFRLTAADGAPAIAFS-----------ALAMNRDGYGNLCELVSLGRMRGK-KGS 117 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L++ L L + I F + Q + ++ F ++FGDR +V L Sbjct: 118 YRLAPRDLEQPDAPFTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V ++A H +P+VAT+ L DVL ++ V + Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPV-SECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV +ARRC+F L P + D+ Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV-- 292 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G + R G D + +++ EL +IA + + YFL V D +Q Sbjct: 293 --ATYLREQTYIGAQRRFPAG------IPVDVQAQIEHELQLIAELNYEAYFLTVYDIVQ 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++N I GRGS A S Y L +T++DP R S+LFERF++ +R PD D+DF Sbjct: 345 FARQNGIL-CQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ KYG +R A + + ++ALR+ G+AL + + VDR+ K + Sbjct: 404 RREEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSR 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 LQ A+ P + + +L G RH S H+ G VI L++LVP+ Sbjct: 464 ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 D + Q++ IE G++K D L L L++++++LD + +RG +L IP + Sbjct: 520 ENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ +V+ Sbjct: 580 DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYL 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ G E + ++ LK T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ +R +SG + G + A IF + F +YGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLA+ + + + QDAR+ ++++P VN D + + Sbjct: 760 HEPAVFLASLLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRL 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896 + ++G+ A I A A +PF + D R +L+R L+ L A AL G Sbjct: 820 GFSLLRGMRADVAGRIELARAVRPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R A ++ + + + + + Sbjct: 877 NRR------------AALWLAAAAIPDRDLLRGTERDDA----VPALPQASEGKEIVTDY 920 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R +GF HPL + + L ++ E+ G R +V +Q+ T G + Sbjct: 921 RAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + + +P Sbjct: 979 FMTLEDETGQVNVILWP 995 >gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI] gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI] Length = 1379 Score = 615 bits (1586), Expect = e-173, Method: Composition-based stats. Identities = 325/1067 (30%), Positives = 543/1067 (50%), Gaps = 59/1067 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-- 64 + F H+ H+S+S+L + +N+++ K A+ ITD N+ F +K Sbjct: 207 NTKYFSHIHNHTSFSILSSTIDINSLIKKTIEYNMDAVGITDYGNMMGVFNFIKKIKNLN 266 Query: 65 ---AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 I+PIIGC+L I N + K + V GY L +L S ++ Sbjct: 267 DNNNKIKPIIGCELFISY--NYLIKKFTKQNPDKIYHQVFFAKNKNGYNNLSKLCSHGFI 324 Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 RI + +++ E LI ++G + I AEK + LFGD Sbjct: 325 DGYYSGIPRIGKNLIEKY-KENLIAISGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDD 383 Query: 182 LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Y+ + RH + ++ +++ + + + +A NN+ +LS++DY AHD+L+ V +S Sbjct: 384 FYIEILRHGLEEEDHVNKILLKFSKKYNVKFIAQNNNFYLSQKDYNAHDILLCVKNSQKQ 443 Query: 241 SQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293 S + Y KN+ +M ++FSDLPEA +N E+ + F + +LP Sbjct: 444 STPIGKGKGFRFGFPNKEFYFKNKFQMYNLFSDLPEAFDNLKELIEKVEFYDISNQILLP 503 Query: 294 RFIEKECDDIQKEEE----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +F + + LR G + + +++++FEL I Sbjct: 504 KFNIPNKWIKKNCNKNNENEYLRFLTYKGAKKKYID-------LNDRIKKKIEFELETIK 556 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ + GYFLIV D I AK I VGPGRGS AGSV AY L IT+IDP++++LLFERFLN Sbjct: 557 KIGYPGYFLIVQDLIFKAKNIGIEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLN 616 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD R L + Sbjct: 617 PDRVSLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLTL 676 Query: 470 SQVDRLCKLIPN------DPAHPVSLQAIADDSRFREARLADPSVDR-------LLEISQ 516 + +++ K++PN SL+ I ++ + +L+ + Sbjct: 677 LETNKIAKIVPNLSLKEIIKKKIKSLKEILNNEELENVIKLKKIFKKKNTLQSKILKQAM 736 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EG R+ HA GI+I + +P+ S+ +TQF+ +EK GL+K DFLGL Sbjct: 737 VIEGSVRNTGIHACGIIITPSDIKDYIPVSTTKDSNFLLTQFDNDVVEKVGLLKMDFLGL 796 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 KTLT+++++L ++ + L IP DD +TY L T+ +FQ ES GM++ L ++ Sbjct: 797 KTLTIIKETLYLISN----LKLENIPLDDVKTYELFKKGETVAVFQYESPGMQKYLIQLK 852 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PD D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ +YQEQVM Sbjct: 853 PDKFYDLIAMNALYRPGPMQYIPNFIARKHGLEKISYDLPELKEFLEETYGITVYQEQVM 912 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 I+Q +SG+S +AD LR+A+GKK K+ + K K +FI G KNG S I I++ F Sbjct: 913 LISQKISGFSKGDADFLRKAIGKKDKKILFKIKNKFIYGGLKNGFSIKILEKIWKDWKAF 972 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSH+ Y+ I++QTA++KTHYP E++A+ ++ M ++ + F ++ ++ + + Sbjct: 973 ASYAFNKSHSTCYSYIAFQTAYLKTHYPAEYMASVLSNNMQKIKNVTFFIEECKRIGVIV 1032 Query: 817 MPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 + P +N F V I + L AIKG+G ++ + I++ ++ ++S+ + VD + Sbjct: 1033 LGPDINESNYKFTVNKMGYIRFGLGAIKGIGESSVKSILKERKNR-YNSILELIKNVDLR 1091 Query: 876 KLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNIQKYAQWVEKNRTNKHENIFA 928 +N++VLE+LV +GA D R Q ++ + K+ +K + N +F Sbjct: 1092 LVNKKVLENLVLSGAFDNLNNIHRYQYFYEENGSNMIEKMIKFGVKYKKLKKNVKNTLFR 1151 Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988 + K + + N+ + E+ V+G Y + HPL+ Y ++ ++ Sbjct: 1152 NVKDIEILEPKFKICKEWNNFYKLNKEKEVIGMYMTSHPLNEYNYEIKNFTNASLDDLNK 1211 Query: 989 TIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I G + + ++ + + + + + E F Sbjct: 1212 NIEKNIGKILNICGIIS--KSRIS-NNKKYIIFLLEDYKSNKEFKLF 1255 >gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri GWSS] Length = 1411 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 317/1060 (29%), Positives = 530/1060 (50%), Gaps = 69/1060 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63 + H+ H+S+S+L + +N+++ K A+ ITD N+ F + Sbjct: 236 YSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295 Query: 64 -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+PIIGC+L I D +K T + + V GY L +L S ++ Sbjct: 296 VKKKIKPIIGCELYISYNDLIKKT-------DKIYNQVFFAKNKNGYYNLSKLCSHGFID 348 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 I + +++ LI ++G + I AEK + LFGD Sbjct: 349 GYYSGIPIIGKNLVEKYKA-NLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407 Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ + RH + +Q +++ + + + NN+ +LS++DY AHD+L+ V +S S Sbjct: 408 YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467 Query: 242 QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-----LQVHA 289 + Y KN+++M ++FSDLPEA +N E+ + F + + Sbjct: 468 TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITNKILLPK 527 Query: 290 PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349 +P K+ E LR G + Y ++++ FEL I Sbjct: 528 FYIPNKWIKKYCIKNNYENEYLRYLTYKGAKK-------KYLYINDIIKKKISFELETIK 580 Query: 350 RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409 ++ + GYFLIV DFI AK + VGPGRGS AGSV AY L IT+IDP++++LLFERFLN Sbjct: 581 KIGYPGYFLIVQDFICQAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLN 640 Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469 PDR+S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD R L +P Sbjct: 641 PDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLPL 700 Query: 470 SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDR-------LLEISQ 516 + D + K++PN + + I + +L+ + Sbjct: 701 LETDNIAKIVPNISLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSKILKQAM 760 Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576 +EG R+ HA GI+I + + +P+ S+L +TQF+ +E+ GL+K DFLGL Sbjct: 761 VIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLKMDFLGL 820 Query: 577 KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636 KTLT+++ +L + + L + D +TY L T+ +FQ ES GM++ L ++ Sbjct: 821 KTLTIIKDTLYLIK-----IPLYEVNLYDVKTYKLFKKGETVAVFQYESPGMQKYLRRLK 875 Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696 PD +D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ +YQEQVM Sbjct: 876 PDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELQEFLEETYGITVYQEQVM 935 Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 I+Q +SG+S +AD LR+A+GKK K+ + K++FI G NG SK I I++ F Sbjct: 936 LISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIYGGINNGYSKNILEKIWKDWKSF 995 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 A Y FNKSH+ Y+ I+++TA++K HYP E++A+ ++ M N++ I F ++ ++ + + Sbjct: 996 ASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECKRMGVIV 1055 Query: 817 MPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873 + P +N F V I + + AIKG+G + I++ ++ ++S+ VD Sbjct: 1056 LGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YNSIFCLIKNVD 1114 Query: 874 SKKLNRRVLESLVFAGALDCFGY--SRMQLLQS------LDNIQKYAQWVEKNRTNKHEN 925 + +N++VLE+LV +GA D F R Q ++ I K+ + + N + Sbjct: 1115 LRLVNKKVLENLVLSGAFDNFKKKIHRSQYFDEENGSNMIEKIIKFGVKYKNLKINMKNS 1174 Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 +F++ K + + N+ + E+ V+G Y + HPL+ Y + ++ Sbjct: 1175 LFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYETKYFTNASLDD 1234 Query: 986 SVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 G I + ++ + ++ + + Sbjct: 1235 INHNKEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1274 >gi|330822180|ref|YP_004351008.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] gi|327374332|gb|AEA65685.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3] Length = 1049 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 291/1037 (28%), Positives = 463/1037 (44%), Gaps = 63/1037 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQ S++S L GA ++++ A AIAITD +L + +A AAG+ Sbjct: 10 PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHMEAKAAGLP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L EGY L EL++ K + Sbjct: 70 LIIGSHFRLTAGDGSPALA-----------FTALAMNREGYGNLCELITLGRTRAA-KGT 117 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L+ E E L L I F + Q + +L ++FGDR V L Sbjct: 118 YRLAPMDLEHPEAPLEHLRSLPDCM--IIVTPDFPANEQRLDAQLEWAARVFGDRARVAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V + A H++P+VAT+ L DVL + V + Sbjct: 176 TLHARAMDDIHRGAVERAAARHDVPVVATSWPLMHVRSRKPLQDVLTGIRLGRSV-GECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV IA+RC+F L P + Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRIAQRCTFSLDELRYEYPDELVPAG----Y 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + G R G + + +++ EL +IA +K+ YFL V D ++ Sbjct: 291 TPASYLREQTYIGAHGRFPNG------IPFNVQAQIEHELQLIAELKYEPYFLTVYDIVR 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ NI GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 345 FARSQNIL-CQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISKERNEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ +KYG +R A + + + ALR+ G+AL + VDR+ K + Sbjct: 404 RREEVMQYIYSKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSK 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L A+ + P + + L G RH S H+ G VI LS++VP+ Sbjct: 464 ADLLARFAE----AGLDVEAPMNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPI 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 D + Q++ IE GL+K D L L L++++++L+ + +RG +L IP + Sbjct: 520 ENAAMEDRTIIQWDKDDIEALGLLKIDVLALGMLSMVRRALEMISEKRGEAFELQDIPAE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L ++G+FQ+ES L +QP C D++ V++ RPGP+ +V+ Sbjct: 580 DAATYEMLCHGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFL 639 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + P ++ LK T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ ER ++G G + A IF + F DYGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHERLVNGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLAA + + + QDAR+ ++++P V T D + + + Sbjct: 760 HEPAVFLAALLNSQPMGFYTPSQLIQDARRRGVEVLPVDVTTSTWDSVLEGDTTAAPVRL 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-Y 896 ++ I G+ A I A A +PF + D R L+R L L A AL Sbjct: 820 GMSLISGMRVEAAERIQLARAVRPFVDVADLARRA---ALDRHDLTVLAHASALRSLAKG 876 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R + + + + + L + S + + Sbjct: 877 NRRNAIWTAAAAVPDKDILRGTERD-------------DEAPALPQASEGSE---IVTDY 920 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R +GF HPL++ + LR + E G R +V +Q+ T KG + Sbjct: 921 RAMGFTLGRHPLELLRDRLRADRLLPARELAQLRNGQFARACGIVTVRQRPGTAKG--VL 978 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + + +P Sbjct: 979 FITLEDETGQTNVIVWP 995 >gi|139438972|ref|ZP_01772432.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC 25986] gi|133775683|gb|EBA39503.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC 25986] Length = 1267 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 325/1023 (31%), Positives = 513/1023 (50%), Gaps = 66/1023 (6%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC++ + L ++ P + ++LL EGY L++ VS + Sbjct: 119 IKPIFGCEVYFTPDETLARDHK-----PELYHMILLAKDQEGYVNLMQTVSEA-AVQGFY 172 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R+ L L+ +G+I + +G I + + A K TF+ F Y+ Sbjct: 173 YKPRVTLDNLRR-HAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIE 231 Query: 186 LQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 +Q H D + ++ +A + ++ATN+ +L ED DV+M + + Sbjct: 232 IQEHGITTDNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAK 291 Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V +R R+T + Y+K EM ++F PEA +NT+EIA +C L + ILPRF Sbjct: 292 VDDPNRMRMTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFPL- 350 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D + E++ R + GL + + ++R ++E VI F+ YFL Sbjct: 351 --LDPGETHESQFRRECEKGLRQHYGDDWATREIGGVNIKERFEYEYKVICDKGFAAYFL 408 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IVA+++QWAK N I VGPGRGS AG++ AYA+ IT DPL L+FERFL+P R MPD Sbjct: 409 IVAEYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDI 468 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF +RR EV+ +V+ YG E+V +IT+ +++AK A+ D R L P RL K+ Sbjct: 469 DMDFDDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKM 528 Query: 479 IPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 + +DP + + F EA D R+++ + +EGL R HA Sbjct: 529 VSSDPKVKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACA 588 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I P+++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+ + + Sbjct: 589 VLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKK 648 Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + + IPFDD E + L+ + T G+FQ+ES+GM ++ M+P + ++AL++LY Sbjct: 649 NFGIDIKEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALY 708 Query: 651 RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ +V Y NR NGKE VS +D +L ET G ++YQEQVM I+ + G+S Sbjct: 709 RPGPLGAGMVSSYINRMNGKEPAVSYDDRLDDILGETYGTMVYQEQVMLISVEMCGFSKG 768 Query: 709 EADV-------------LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755 E+D L + + + +++GA KN ++ +A I++ + + Sbjct: 769 ESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWDDVLE 828 Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815 FA Y FNKSH+A YA++ QTAW+K HYP E++AA +T +KI + R I Sbjct: 829 FASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRHDGIP 888 Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874 ++ P VN +F + + LA I+GVGT A+ I+ A PF +L DF RVDS Sbjct: 889 VLSPDVNESGTEFTATKEGVRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVERVDS 948 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWVEKNRTNKH---ENI 926 + NRRV+ESL+ AGA D GY R Q++ +D I A +K+R + ++ Sbjct: 949 SQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTSFFDM 1008 Query: 927 FAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985 F +G+ F + + ++ E+ VLG Y S HPL ++ L K + + Sbjct: 1009 FGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDFSFSQ 1068 Query: 986 S---------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030 G + A MV S ++ T+ G +G V + E Sbjct: 1069 IDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGEATVV 1128 Query: 1031 FFP 1033 FP Sbjct: 1129 VFP 1131 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 31/53 (58%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62 +FVHL H+ +S+L+GA + +++++ PA+AITD ++ + + Sbjct: 2 AFVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLALAC 54 >gi|325272956|ref|ZP_08139274.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51] gi|324101909|gb|EGB99437.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51] Length = 1026 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 284/1039 (27%), Positives = 458/1039 (44%), Gaps = 79/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P + L S++S GA S + + + A+AITD L + Q A Sbjct: 1 MNSAP-YAELHCLSNFSFQRGASSADELFRRAKEQGYQALAITDECTLAGIVRAWQAAKV 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 + ++G ++ + P +VLLV+ GYQ L L++R + Sbjct: 60 HQLPLVVGSEVQLHDG----------------PKLVLLVADLAGYQNLCALITRARRRAE 103 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K ++ LQ+ L + G G + LF +RL++ Sbjct: 104 -KGDYQLFRDDLQQHHHGLLALWVAGDRGD-------------TATGQWLRGLFAERLWL 149 Query: 185 NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + HRG D R Q Q LA + VA + D + A+ V++ Sbjct: 150 AVHLHRGSDDARHLQGQQALAAELGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVAEA 209 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + +L++ ++ ++ A T+ IA+RC F L PR + E Sbjct: 210 GRFLFANGERHLRSPVQLAELYPPEMLA--ETLAIAQRCQFDLGQLRYQYPRELVPE--- 264 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR GL VR G A RQ LD EL +I + + YFL V D Sbjct: 265 -AHTPASWLRALCEQGLPVRWPHGPSA------KVRQVLDTELALIEELGYESYFLTVHD 317 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +A++ I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF Sbjct: 318 IVAFARRQRIL-CQGRGSAANSVVCFVLGITELDPMQHRLLFERFLSRERNEPPDIDVDF 376 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+YV +YG R A + A A+RDV R L +P QVD L K Sbjct: 377 EHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPMDQVDALAKCCGRW 436 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 Q +A+ P + R+L ++ +L G RH S H G VI +PL QL Sbjct: 437 SDRIPDEQRLAE----AGFEAGSPLLRRVLILAGELIGFPRHLSQHPGGFVISQQPLDQL 492 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLI 601 VP+ ++ V Q++ ++ GL+K D L L L+ L++ D RG ++ L+ I Sbjct: 493 VPVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRELTLATI 552 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 553 PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPNTFYDLVIEVAIVRPGPIQGDMVH 612 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+ +E + P + + + T GV ++QEQVM++A + + YS EAD LRR+M Sbjct: 613 PYLRRRLKQEPVTYPSPKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAA 672 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + ++R + G +NG A IFE + F YGF +SHAA++A++ Y ++W Sbjct: 673 WKRHGGLEPHRQRLLQGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833 +K H P F A + + Q+AR+ I++ P V D + + Sbjct: 733 LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDAQGTL 792 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L ++G+ AR + +A A +P+ +ED C R R L AGAL Sbjct: 793 ALRMGLRLVRGLAEADARRLEQARAQQPWRDVEDLCLRAGLAT---RARACLADAGALRA 849 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R Q + + +FA + + L + Sbjct: 850 LASDRHQARWQVAAV------------QAQLPLFADVQAVPEVAVQLP---APTVAQDLV 894 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + + LG HPL + + LR +G + E G+NI + +VV +Q+ +T G Sbjct: 895 ADYQALGTTLGPHPLTLLRTRLRALGCRSSAELQGLEHGDNIAVTGLVVGRQRPQTASG- 953 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + +VT + + Sbjct: 954 -VTFVTLEDEHGMVNVVVW 971 >gi|116667785|pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E. Coli Replicative Dna Polymerase Iii Length = 917 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 393/935 (42%), Positives = 552/935 (59%), Gaps = 37/935 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P FVHL+VHS YS ++G ++ K AA PA+AITD NL ++F Sbjct: 1 MSE-PRFVHLRVHSDYSXIDGLAKTAPLVKKAAALGXPALAITDFTNLCGLVKFYGAGHG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AGI+PI+G ++ Q + + +L + GYQ L L+S+ Y Sbjct: 60 AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 G I WL E+ EGLI+L+GG G + R+ +S + ++ + +++ F DR ++ Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRXGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168 Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R D V+LA LP+VATN+ F+ D++AH++ +A+ + Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228 Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RPR +P Y ++ E +F+D+PEAL NTVEIA+RC+ +++ + + Sbjct: 229 KRPRNYSPQQYXRSEEEXCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L +A GLE RLA + +Y +RL+ EL VI + F GYFLI Sbjct: 284 GDXSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQXGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S PDFD Sbjct: 344 VXEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSXPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC ++RD+VI +V + YG + V+QIITFG+ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCXEKRDQVIEHVADXYGRDAVSQIITFGTXAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + E AD V L++ ++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGXTL-AKAFEAEPQLPEIYEADEEVKALIDXARKLEGVTRNAGKHAGGVVIAPTKI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596 + P+Y D PVTQF+ +E AGL+KFDFLGL+TLT++ +L+ + +R K Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEXINKRRAKNGEP 582 Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 D++ IP DD +++ L T +FQLES G + ++ +QPDC ED IALV+L+RPGP Sbjct: 583 PLDIAAIPLDDKKSFDXLQRSETTAVFQLESRGXKDLIKRLQPDCFEDXIALVALFRPGP 642 Query: 655 ID--NIVVYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + + +RK+G+E+I H + P+L+ T G+I+YQEQV QIAQ+LSGY+L Sbjct: 643 LQSGXVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVXQIAQVLSGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD LRRA GKK EE KQ+ F GA KNGI+ +A IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADXLRRAXGKKKPEEXAKQRSVFAEGAEKNGINAELAXKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+K HYP EF AA T + DN EK+ + + ++I+PP +N+ Sbjct: 763 AYALVSYQTLWLKAHYPAEFXAAVXTADXDNTEKVVGLVDECWRXGLKILPPDINSGLYH 822 Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885 F V D I Y + AIKGVG I+EA F L D C+R D+KKLNRRVLE L Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 + +GA D G R L SL + K A K Sbjct: 883 IXSGAFDRLGPHRAALXNSLGDALKAADQHAKAEA 917 >gi|41409574|ref|NP_962410.1| error-prone DNA polymerase [Mycobacterium avium subsp. paratuberculosis K-10] gi|71151829|sp|Q73U92|DNAE2_MYCPA RecName: Full=Error-prone DNA polymerase gi|41398405|gb|AAS06026.1| DnaE2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1093 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 276/1038 (26%), Positives = 480/1038 (46%), Gaps = 60/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S + L HS++S L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 54 SSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + + P P P +++L EGY+RL ++ +L K Sbjct: 114 VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R L L E +LTG G + +A A + L FG R+ + Sbjct: 168 GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIE 227 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L RH D R + + LA + +VAT + F + A+ + Sbjct: 228 LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSAA 287 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ +EM +F+ P+A+ E+ +C+F L + AP LP F + Sbjct: 288 GWLAPLGGSHLRSGAEMARLFAWRPQAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR + G R HA +++ EL VIA+++F GYFL+V D Sbjct: 345 -HTEDSWLRQLTMTGARDRYG-----SPEHAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++NNI GRGS A S YAL +T +DP+ LLFERFL+P R PD D+D Sbjct: 399 ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV ++YG + AQ+ + + K A+RD+ RAL Q D K I + Sbjct: 458 SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQISSWS 517 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 S + +++++ ++ L RH H+ G+VI DRP++ + Sbjct: 518 GPADSPDVEGIPPQ-------------VIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VDL+ + Sbjct: 565 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 624 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 625 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP ++P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 685 YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + +E L FA++GF +SHA ++A + + ++W Sbjct: 745 RSTERMRRLRSRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + + Sbjct: 805 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A +++ + PF SL D +R+ +L+ + E+L AGA CFG Sbjct: 865 LGLGAVRHIGDDLAEKLVQERKANGPFTSLLDLTARL---QLSVQQTEALATAGAFGCFG 921 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 922 MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ + G+ + +A V +Q+ T +G + Sbjct: 967 VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042 >gi|146306963|ref|YP_001187428.1| error-prone DNA polymerase [Pseudomonas mendocina ymp] gi|167016911|sp|A4XTN0|DNAE2_PSEMY RecName: Full=Error-prone DNA polymerase gi|145575164|gb|ABP84696.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp] Length = 1026 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 268/1037 (25%), Positives = 436/1037 (42%), Gaps = 79/1037 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P + L S++S GA S + ++ A A+AITD L + Q A G+ Sbjct: 2 TPDYAELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETGL 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 I+G ++ P P +VLL GYQ L L++ K Sbjct: 62 ALIVGSEM----------------PIEGGPKLVLLAEDLAGYQALCRLITVARRR-AEKG 104 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L A + Q ++ ++ F DRL++ ++ Sbjct: 105 RYRLLREDFDTPLAGLL-------------AIWLAEPQASDSEGAWLRQRFADRLWLGIE 151 Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 HRG D R Q+ LA ++P +A + + D + A+ V++ Sbjct: 152 LHRGADDAARLRQLQALAARLQIPALACGDVHMHARGRRALQDCMTAIRQHLPVAEAGAW 211 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 P+ R E L+ T+ +A RC F L P + D Sbjct: 212 LF-PNGERHLRRREELAELYPQELLDETLRVAARCHFELDQLKYQYPHELVPAGHD---- 266 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR++ GL R GA R +++ EL +I +K+ YFL V D + W Sbjct: 267 ASSWLRHRVEEGLRWRWPDGAST------KVRTQVEHELQLITELKYESYFLTVHDIVSW 320 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDFDIDFCQ 424 A+K +I GRGS A S +AL IT+++P LLFERFL+ +R PD D+DF Sbjct: 321 ARKQHIL-CQGRGSAANSTVCFALGITELNPDNSGSRLLFERFLSRERNEPPDIDVDFEH 379 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI+YV +YG +R A + ALRDV +AL +P QV L Sbjct: 380 ERREEVIQYVFRRYGRQRAALTAVASTYHGAGALRDVAKALGLPPDQVGALADCCGRWSD 439 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 H + + + PS+ R+L ++ +L G RH S H G VI + PL LVP Sbjct: 440 HMPDAERLRE----AGFDPDSPSLHRILTLAGELIGFPRHLSQHPGGFVISEHPLQTLVP 495 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + ++ V Q++ ++ GL+K D L L L+ L++ + + RG + L+ +P Sbjct: 496 VENASMAERTVIQWDKDDLDLVGLLKVDILALGMLSALRRCFALIERYRGTRWTLASLPQ 555 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 556 EDAATYAMISRADTVGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPY 615 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+N +E + + P+ T GV ++QEQVM++A + + YS EAD LRR+M Sbjct: 616 LRRRNDEEPVEYPSDELRPVFARTLGVPLFQEQVMELAMVAADYSPGEADELRRSMAAWK 675 Query: 722 KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + ++R S + G + IF + F YGF +SHAA++A+++Y + W+K Sbjct: 676 RHGGLEPHRQRLTSRMLEKGYTAEFTARIFRQIEGFGSYGFPESHAASFALLTYASCWLK 735 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835 H P + A + + QDAR+ I++ P V D + I Sbjct: 736 CHEPAAYACALVNSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAWDCSLEPSDGEQPAI 795 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++G A I PF ++D C R L+ R E L AGAL Sbjct: 796 RLGLRLLRGFREEDALRIEATRQAAPFTDVDDLCRRA---TLDARARECLADAGALRGLA 852 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + ++ + +FA + Sbjct: 853 GNRYRARWAVAGV------------EPQLPLFAGHSSREEP----VALPRPTVGEDLLTD 896 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HPL + + LR + E G + +A +V+ +Q+ +T G + Sbjct: 897 YATFGTTLGPHPLALLRERLRAKRCRSSHELCTVEHGRPVSVAGLVIGRQRPQTASG--V 954 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 955 IFVTLEDEFGMVNVVVW 971 >gi|323142803|ref|ZP_08077516.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066] gi|322417448|gb|EFY08069.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066] Length = 1206 Score = 612 bits (1578), Expect = e-172, Method: Composition-based stats. Identities = 387/1051 (36%), Positives = 570/1051 (54%), Gaps = 62/1051 (5%) Query: 23 LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82 ++G S+ I+ + AA + PA+AITD +N+ ++F +AGI+PI+G ++++ + Sbjct: 1 MDGLESVGAIVKRAAALKIPALAITDISNICGFIKFYTACKSAGIKPIMGADIEVEEEVK 60 Query: 83 LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRICLSWLQEIGT 141 T + LL G Q L +++S +L D G + + L+ L++ + Sbjct: 61 PGEKA-------TSFKLTLLAMDRVGQQNLYDILSDAWLRSDAGAFNAKTSLADLKKY-S 112 Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200 EG+I+L G G I S+ RL + + F DR + R +R + E+ Sbjct: 113 EGIIILDGFR-GDIAAMAQRKDSKAIRARLKFYLENFNDRFCFEITRTNRIGESEFENFA 171 Query: 201 VQLAYTHELPLVATNNSLFLSEED---------YEAHDVLMAVAHSTVVSQKDRPR-VTP 250 + L + + VATN+++FL ED Y+ HDV +++ K+ R + Sbjct: 172 LNLCVEYNIAPVATNDTVFLFGEDNVGKDGFSDYQIHDVRVSIQAGCQRGNKEMARKYSK 231 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 + YLK +M ++F+D+PEAL+NT IA RC+ +++ Sbjct: 232 EQYLKTPEQMEALFADIPEALQNTRNIAERCNIEIEL-----DHPRLPRYPTGDLSPAEY 286 Query: 311 LRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR KA GLE L + Q Y RL+ EL+VI M F GYFLIV +FIQW+ Sbjct: 287 LRKKAAEGLEERLEFLYPDEKERNEKRQTYVDRLNTELDVIINMDFPGYFLIVMEFIQWS 346 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K++ +PVGPGRGSG GS+ AY+L ITD DPLRF LLFERFLNP+R+SMPDFD+DFCQ R Sbjct: 347 KEHGVPVGPGRGSGGGSLVAYSLKITDFDPLRFDLLFERFLNPERISMPDFDVDFCQRNR 406 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++ + +V+N+YG+ V+QI TFG++ KAA++D GRAL M Y VD + K +P P Sbjct: 407 EKTLEHVKNRYGNNAVSQIATFGTMAPKAAIKDAGRALGMGYGAVDFVAKQLPTQPGLTF 466 Query: 488 S---------LQAIADDSRFREAR-----LADPSVDRLLEISQKLEGLYRHASTHAAGIV 533 F D L+ I+ +LEG+ R+ HAAG+V Sbjct: 467 KAAMGIGKDGKPCDPLAPDFVNLYQKALQDDDRQRVELIHIALRLEGVIRNIGKHAAGVV 526 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I ++ P+ D +TQF+ K +E AGL+KFDFLGL TLT++ +L + R Sbjct: 527 ISPTRTAEFSPLMLDS-DGNSITQFDKKDVEHAGLVKFDFLGLTTLTIIDDALTMINARK 585 Query: 594 VKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 K + +P++D E++ +L T +FQLES+GMR+ + MQPD +D+IALV+ Sbjct: 586 AKHHEPPVNIHAVPYEDPESFAVLQQCETTAVFQLESAGMRKLIGQMQPDRFDDLIALVA 645 Query: 649 LYRPGPIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701 LYRPGPI + +V + RK+GKE++ P + P+L T GVI+YQEQVMQIAQ+ Sbjct: 646 LYRPGPIKSGMVDHFVQRKHGKEEVAYPSPDFQDLDLKPILDSTYGVIVYQEQVMQIAQV 705 Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761 L+GYSL AD+LRRAMGKK EM Q+ F GA K G IA+ IF+ + KFA+YGF Sbjct: 706 LAGYSLGGADILRRAMGKKNPAEMAGQRSVFKEGAGKKGKDTDIAMKIFDQVEKFAEYGF 765 Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821 NKSH+AAYA++++ T W+KTHYP EFLAA MT + VEK+ + + + I++ PP V Sbjct: 766 NKSHSAAYALVAWWTLWLKTHYPAEFLAAMMTADRQRVEKLVSYIAECNRLKIKVNPPDV 825 Query: 822 NTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 +F V D I Y + A+KG+G I++ A KPF DF RV K LNRR Sbjct: 826 TEGLFNFTVNDAGEIIYGIGAVKGIGEDVVEDIIKERAQKPFKDFFDFVKRVGPKHLNRR 885 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 E+LV +GALD G SR Q++ S+ KYA + + ++FA T + T Sbjct: 886 TFEALVASGALDKLGPSRAQMMASIPTAMKYAVQESSDAASGQLDLFAAISETTA--PTF 943 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLA 998 + R E+ VLG Y SGHP+++Y L + R N + Sbjct: 944 VACRPWSEKYRLYLEKNVLGLYLSGHPINIYIDELTRNYRSTISTLRPGTAQRPNPVTFY 1003 Query: 999 AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028 +V+S ++ ++ GS+ + + + E Sbjct: 1004 GIVISSTERTSKNDGSKFYILILDDGTSQLE 1034 >gi|299822765|ref|ZP_07054651.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM 20601] gi|299816294|gb|EFI83532.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM 20601] Length = 1110 Score = 612 bits (1578), Expect = e-172, Method: Composition-based stats. Identities = 366/1029 (35%), Positives = 575/1029 (55%), Gaps = 42/1029 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S++ LL SL+ ++ K A ++AITD N L+ A+ F +K AA I+PI Sbjct: 3 FVHLQVKSAFDLLSSTASLDALIAKAKACGFDSLAITDKNALYGAVNFYEKCQAAQIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + G ++LL T GYQ L+++ S + D+ Sbjct: 63 IGMTVSV----------YGYIDTTRSYELLLLAETTAGYQNLLKIASAIQTQDEK----V 108 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + L+WL+ G +GLI ++ G++G ++ +S + A + ++ +F D ++++Q Sbjct: 109 LPLNWLKAYG-KGLIAISPGATGEVEHLLMDSSPESAAEVTAYWQSIFSQDSFFLSIQAE 167 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + V + E+ +V T + +L D A +VLMA+ + V + P Sbjct: 168 NP---RLKEAVQNFSSAQEIDVVLTKDVQYLDAGDVRAQEVLMAIRDNRTVDYEKLPLAG 224 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+ S+ +D +A E T +IA RC ++ + +LPRF + Sbjct: 225 PNFLASADEMAASLTTDFEQQAYEQTAKIAARCQVVIPMGLQLLPRFPLRSG----SNAS 280 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL A+AGL+ + Y RL +EL+VI +M F YFLIV D +++A+ Sbjct: 281 AELEKLALAGLQE-------RNVARDKRYLDRLHYELDVITKMGFQDYFLIVWDVMRFAR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+ + LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EVGILTGPGRGSAAGSLVSYALRITDVDPIAYRLLFERFLNPERVTMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVIRYV +KYG + VAQI TFG+L AKAA+RD R + + K+IP+ + Sbjct: 394 EVIRYVVDKYGADHVAQIGTFGTLAAKAAIRDTARTFGLNAVLLSEWSKMIPSQLGITLK 453 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + R + + + EI++KLEGL RH STHAAGIVI D PL P+ Sbjct: 454 AAR-EQNPRLNSHIHSSHVNEMIWEIAEKLEGLPRHISTHAAGIVINDEPLVTYTPVQSG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 D +TQ+ M +E+ GL+K DFLGL+ L+LL + L + R + L+ IP +D Sbjct: 513 S-GDARLTQYAMGELERIGLLKMDFLGLRNLSLLDRILKIVNYNRTKPLTLADIPLEDKA 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T +L T G+FQ ESSG+R+ L ++P EDI+A+ +LYRPGP++ I + RK+G Sbjct: 572 TLNLFQKGDTTGVFQFESSGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +EKIV H + +L T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK +E +D Sbjct: 632 EEKIVYPHEDLKQILDVTYGVIVYQEQIIQVANRMAGFSLGEADILRRAVSKKKREVLDG 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 +++F+SGA+ NG ++T A +++L+ +FA+YGFN+SHAAAY+ I++Q A++K HYP F Sbjct: 692 FRKQFVSGANANGYAETTANEVYDLIVRFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846 +++ ++ N EKI ++ +A+ + I+++ PSVN F+V +N+I YSL I+ V Sbjct: 752 MSSLLSSVFGNDEKIAQYVTEAKNYGIEMLAPSVNKSGYYFQVEQENKIRYSLRIIRKVP 811 Query: 847 TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ PF DFC R+ + L +VLE+L++AGA D FG R L+ S+ Sbjct: 812 NKFILELLNVRKQGGPFADFFDFCERMPNNMLTHQVLEALIYAGAFDEFGKDRAVLMASI 871 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964 + +Y ++ N+FA E S K + + + E+ G Y S Sbjct: 872 ETGLQYTDLFGESEAG--MNLFATEDSFLKSMKPKYREADPMPMDTKLDKEKEFTGQYVS 929 Query: 965 GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024 HP+ Y+ + + + + E GN+ +A V + +T+KGS++ ++T S+ + Sbjct: 930 AHPVTSYQQVAQTLAVT---ELADVTNGNSYAIAVYVHQIKTVRTKKGSQMCFLTISDAS 986 Query: 1025 KEYEANFFP 1033 KE+ A FP Sbjct: 987 KEFRAVVFP 995 >gi|296121580|ref|YP_003629358.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776] gi|296013920|gb|ADG67159.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776] Length = 1026 Score = 612 bits (1577), Expect = e-172, Method: Composition-based stats. Identities = 275/1033 (26%), Positives = 465/1033 (45%), Gaps = 75/1033 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68 S+ L +++S LE A + ++ + A A+A+TD N+L + + ++ Sbjct: 2 SYAELHCLTNFSFLEAASHPDEMVARAAELGYSALAVTDINSLAGVVRANTATKDHPPLK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ IV+ V GY L L++ K Sbjct: 62 LIVGSEI----------------RPVDASPIVVWVKDRRGYANLCRLITTGRRR-APKGE 104 Query: 129 VRICLSWLQEIGTEGLIML----TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 + L + + GL+ I+ A+ ++ +FG+ + Sbjct: 105 CHLTLDDIAQ-HAAGLLAGVVPPLHCEEFSINDAYL-------------YRDIFGEAFLL 150 Query: 185 -NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 L R +D YR + L+ LPLVA N LF + HDVL A+ T V Sbjct: 151 AELHR-GPHDHYRRGWLQDLSRQTNLPLVAAGNVLFHVPDRKPLHDVLTAIRLGTTVAQV 209 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + + +L+ + +I+ D+P ALE T+ IA +C+F L P + Sbjct: 210 GEALQTNAQRHLRPLDSLKAIYGDIPGALERTLMIAEQCTFSLDELRYEYPEELAPPGF- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L++ G E R G + R L+ ELN+I +++ YFL V D Sbjct: 269 ---SPIQYLQHLTWQGAEQRYPHGL------PEKIRHLLEHELNLIEELRYEPYFLTVWD 319 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S Y L IT +DP R +LFERF++ +R PD D+DF Sbjct: 320 IVRFARSRDIL-CQGRGSAANSAVCYCLGITAVDPERIDVLFERFISRERDEAPDIDVDF 378 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+EV++Y+ NKYG ER + + ++A+RDVG+AL VDRL K + Sbjct: 379 EHERREEVLQYLYNKYGRERAGIAAVTITYRPRSAIRDVGKALGFSLDLVDRLAKNADHY 438 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A + + + + + + +L G RH S H G+VI PL +L Sbjct: 439 RASDDFRLRCQE----AGLDIRSITGRQFVHLVGELLGFPRHLSQHVGGMVITRGPLHEL 494 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 VP+ V Q+N ++ G++K D L L LT ++K + K L+ I Sbjct: 495 VPIENAAMDGRTVVQWNKDDLDDLGILKVDCLALGMLTAIRKCFALVESTTGKTLTLASI 554 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D Y ++ T+G+FQ+ES L ++P C D++ V++ RPGPI +V+ Sbjct: 555 PEGDERVYDMICRADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGDMVH 614 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+ G+E+ + I +LK+T GV ++QEQ MQ+A + +G++ EAD LRRAMG Sbjct: 615 PYLRRRFGEEEETYPNEAIRRVLKKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAMGA 674 Query: 720 KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + +D+ +++ + G ++G+ A +F+ + F +YGF +SHAA++A++ Y +AW Sbjct: 675 WRRPGVIDQFRQKLLDGMKQHGLEGEFAERVFQQIRGFGEYGFPESHAASFALLVYVSAW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838 +K H+P +F AA + + + QD R+ I++ P VN D + + Sbjct: 735 LKYHFPAQFTAAVINSQPMGFYAPSQLVQDVRKHQIEVRPVDVNRSEWDCTLEQESLRLG 794 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 IKG+ + A ++E+ D F S+ DF R L + +E L A AL +R Sbjct: 795 FCLIKGLQESAALTVVESRRDGSFTSMHDFVRRTS---LPQAQVERLAEADALASLNQTR 851 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 + + ++ ++ + +F + + TL + E + R+ Sbjct: 852 RVAVWNALSV---------SKKPRQRTLFDDLEPEEEPEATLPTMAPE---EEVHADYRM 899 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 G HPL ++ L +GI E +++A +V+ +Q+ T KG I +V Sbjct: 900 TGLSLRSHPLAFHRERLETLGIIPAERLAQVPDDTLVKVAGIVLMRQRPSTAKG--ITFV 957 Query: 1019 TFSEPAKEYEANF 1031 T + Sbjct: 958 TIEDETGTANLVV 970 >gi|226305466|ref|YP_002765426.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4] gi|226184583|dbj|BAH32687.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4] Length = 1095 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 281/1032 (27%), Positives = 468/1032 (45%), Gaps = 61/1032 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + + + F++ A G++ + Sbjct: 61 YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D + T P +++L EGY+RL ++ +L K ++ Sbjct: 121 FGAELSLD------SVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 174 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + +A + A + L + FG +R+ V L H Sbjct: 175 YNYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAAEALQDLVERFGAERVSVELTHH 234 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 D R + + +LA L VAT + F + + AV + + Sbjct: 235 GLAEDDERNAVLAELARERGLRTVATTAAHFAAPPRRRLAMAMAAVRARQSLDEAAGWLA 294 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 T +L++ +EM ++FS PEA+ ++ R C+F L++ AP LP F E Sbjct: 295 PTGGAHLRSGAEMATLFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HTE 350 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R + Y+Q L+ EL +I + F GYFL+V D + + Sbjct: 351 ASWLRELTMVGALERYG----PPEGAPKAYKQ-LEHELAIIEGLNFPGYFLVVHDIVSFC 405 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+I GRGS A S YA+ IT++DP+R LLFERFL P+R PD D+D DRR Sbjct: 406 KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESDRR 464 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V KYG AQ+ + + K+++RD+ RAL Q D K + Sbjct: 465 EEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGGIDK 524 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 525 N--------------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPVEW 570 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 ++ V Q++ AGL+KFD LGL L+ L +D +A+ + VDL+ + + Sbjct: 571 ARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLSET 630 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 631 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 690 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +N E + HP ++ L+ T GV ++QEQ+MQ+A ++G++ SEAD LRRAM K+ E Sbjct: 691 RNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRSTE 750 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ + R G +GI +A I+E L FA++GF +SH+ ++A + + ++W K H Sbjct: 751 KMEQLRARLYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLH 810 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F A + + + DAR+ +Q+ +N V + L Sbjct: 811 HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLGLG 870 Query: 841 AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++ +G A I+E PF S D RV+ L ESL AGAL FG SR Sbjct: 871 EVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAGALASFGISRR 927 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + A +R +T + + Sbjct: 928 EALWA----AGAAAGERPDRLPG-----------IGASVTAPTLPGMSDVELAAADVWAT 972 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P +P L +G+ + G+ + + V +Q+ T G + ++ Sbjct: 973 GVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1030 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1031 LEDETGMVNVVC 1042 >gi|118471589|ref|YP_886009.1| error-prone DNA polymerase [Mycobacterium smegmatis str. MC2 155] gi|118172876|gb|ABK73772.1| DNA polymerase III, alpha subunit, putative [Mycobacterium smegmatis str. MC2 155] Length = 1095 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 272/1043 (26%), Positives = 468/1043 (44%), Gaps = 61/1043 (5%) Query: 2 TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + S + L HS+YS L+GA + ++++ A AIA+TD + L+ + F++ Sbjct: 52 QARMPASALPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAE 111 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A + + G +L + + + P P P +++L EGY+RL +++ + Sbjct: 112 AARELDVATVFGAELSLSN------VARTEDPDPPGPHLLVLARGPEGYRRLSREIAKAH 165 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179 L K R L E +LTG G + +A A L FG Sbjct: 166 LAGGEKGRPRYDFDQLTEAAGGHWHILTGCRKGHVRQALSDGGPDAAAAALADLVDRFGA 225 Query: 180 DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR+ + L H D R + + +LA L +VAT + F + + A+ Sbjct: 226 DRVSIELTHHGHPCDDERNAALAELAPRFGLGVVATTAAHFATPSRGRLAMAMAAIRARN 285 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + E ++ D + ++ + Sbjct: 286 SIDTAAGWLAPLGGVHLRSGEEMARLFDPEFVAAAADLGEQCA-----FGLALIAPQLPP 340 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E++ LR+ A+AG R A +++ EL +I +++F GYFL Sbjct: 341 FDVPDGHTEDSWLRHLAMAGAARRYGPP-----ERAPKAYAQIEHELRIIEQLRFPGYFL 395 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 +V D Q+ + NNI GRGS A S YAL +T++DP+ LLFERFL+P R PD Sbjct: 396 VVHDITQFCRDNNIL-CQGRGSAANSAVCYALGVTNVDPIANDLLFERFLSPARDGPPDI 454 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 DID D R+ VI+YV +YG + AQ+ + + ++A+RD+ RAL Q D K Sbjct: 455 DIDIESDLRENVIQYVYERYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKH 514 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + P S ++++E++ ++ L RH H+ G+VI DRP Sbjct: 515 LSRWDGRPDSP-------------DVAEIPEQVIELANQIANLPRHMGIHSGGMVICDRP 561 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 ++ + P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VD Sbjct: 562 IADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYAIDLVAEHKGIEVD 621 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656 L+ + + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI Sbjct: 622 LATLDLSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQG 681 Query: 657 -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 ++ Y R+NG+E + HP ++P LK+T GV ++QEQ+MQ+A +G+S +EAD LRR Sbjct: 682 GSVHPYIKRRNGQEPVTYDHPSMEPALKKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRR 741 Query: 716 AM-GKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 AM K+ +M + + RF G ++GI+ +A I+E L FA++GF +SH+ ++A + Sbjct: 742 AMGSKRSTAKMRRLRSRFYDGMRERHGITGVVADRIYEKLEAFANFGFPESHSLSFASLV 801 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 + ++W K H+P F AA + + + DAR+ + + P VN + + Sbjct: 802 FYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHAGLENR 861 Query: 834 --RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + L +++ +G A+ I++ A+ F SL D SRV +L E+L AGA Sbjct: 862 GLDVRLGLGSVRHIGDDLAQRIVDEREANGQFTSLLDLTSRV---QLTVPQTEALATAGA 918 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 L CFG +R + L + A +R + + ++ Sbjct: 919 LGCFGITRREGLWAAG----AAATQRPDRLPGVGS-----------STHIPPLPGMSALE 963 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + G +P + + L +G+ + + G I +A V +Q+ T Sbjct: 964 LSAADVWATGISPDSYPTEYLRKHLDSLGVVPTDRLLDVADGTRILVAGAVTHRQRPATA 1023 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 +G + ++ + P Sbjct: 1024 QG--VTFINLEDEKGMVNVLCAP 1044 >gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri DMIN] Length = 1405 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 318/1066 (29%), Positives = 533/1066 (50%), Gaps = 69/1066 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63 + K+ + H+ H+S+S+L + +N+++ K A+ ITD NL F + Sbjct: 228 ISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNLMGVFNFINRIKN 287 Query: 64 -------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116 I+PIIGC+L I D +K T + + V GY L +L Sbjct: 288 INDNFLVKKKIKPIIGCELYISYNDLIKKT-------DKIYNQVFFAKNKNGYYNLSKLC 340 Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 S ++ I + +++ LI ++G + I AEK + Sbjct: 341 SHGFIDGYYSGIPIIGKNLVEKYKA-NLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHN 399 Query: 177 LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 LFGD Y+ + RH + +Q +++ + + + NN+ +LS++DY AHD+L+ V Sbjct: 400 LFGDDFYIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVK 459 Query: 236 HSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---- 284 +S S + Y KN+++M ++FSDLPEA +N E+ + F Sbjct: 460 NSQKQSTPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITN 519 Query: 285 -LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343 + + +P K+ E LR G + Y +++++F Sbjct: 520 KILLPKFDIPNKWIKKYCIKNNYENEYLRYLTYKGAKK-------KYLYINDIIKKKIEF 572 Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403 EL I ++ + GYFLIV D I AK + VGPGRGS AGSV AY L IT+IDP++++LL Sbjct: 573 ELETIKKIGYPGYFLIVQDLICKAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLL 632 Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463 FERFLNPDR+S+PD DIDF R+++I +V NKYG +VAQIIT+G + AK+++RD R Sbjct: 633 FERFLNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTAR 692 Query: 464 ALQMPYSQVDRLCKLIPN------DPAHPVSLQAIADDSRFREARLADPSVDR------- 510 L +P + D + K++PN + L+ + Sbjct: 693 VLNLPLLETDNIAKIVPNLSLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSK 752 Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570 +L+ + +EG R+ HA GI+I + + +P+ S+L +TQF+ +E+ GL+K Sbjct: 753 ILKQAMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLK 812 Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 DFLGLKTLT+++ +L + + L + D +TY L T+ +FQ ES GM++ Sbjct: 813 MDFLGLKTLTIIKDTLYLIK-----IPLYEVNIYDVKTYKLFKKGETVAVFQYESPGMQK 867 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690 L ++PD +D+IA+ +LYRPGP+ I + RK+G EKI P + L+ET G+ + Sbjct: 868 YLRRLKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELKEFLEETYGITV 927 Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750 YQEQVM I+Q +SG+S +AD LR+A+GKK K+ + K++FI G NG SK I I+ Sbjct: 928 YQEQVMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIDGGINNGYSKNILEKIW 987 Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810 + FA Y FNKSH+ Y+ I+++TA++K HYP E++A+ ++ M N++ I F ++ + Sbjct: 988 KDWKSFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECK 1047 Query: 811 QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLED 867 + + ++ P +N F V I + + AIKG+G + I++ ++ ++S+ Sbjct: 1048 RMGVIVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YNSIFC 1106 Query: 868 FCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLL------QSLDNIQKYAQWVEKNR 919 VD + +N++VLE+LV +GA D F R Q ++ I K+ + + Sbjct: 1107 LIKNVDLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFYEENGSNMIEKIIKFGVKYKNLK 1166 Query: 920 TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979 N ++F++ K + + N+ + E+ V+G Y + HPL+ Y + Sbjct: 1167 INMKNSLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYETKYFT 1226 Query: 980 IKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 ++ G I + ++ + ++ + + Sbjct: 1227 NASLDDINHNQEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1272 >gi|157804147|ref|YP_001492696.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel] gi|157785410|gb|ABV73911.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel] Length = 1200 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 405/1101 (36%), Positives = 603/1101 (54%), Gaps = 99/1101 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ I++ + ++ AI + D+ NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKIVELASLNKMSAICLADSGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I N+ I+L+ GY+ L++L S + K Sbjct: 63 PIHGVILNIQYDINI------------FAQILLIAKDEVGYKNLLKLSSLTVTKNDRKIC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L + EGLI L + G + + + + A +++ DR Y + R Sbjct: 111 DHINFEDLVKY-QEGLIALCCYTDGIVGKCLLARNEEQAILFARKLQEILADRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + + AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIEDHYIKIAAELAIPLVATNKVLFSEKSMHYAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y K+ EM+ +FSDLP A+ENTV + RC F A + E Sbjct: 230 VSENCYFKSPREMIELFSDLPAAIENTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + +R +A G + +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKEATEGLLARLAIKFKSENISLENQEELKTEYLSRLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+K+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKQEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D + +L+P Sbjct: 405 DFCQERREEVINYVRSKYGYNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYITELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PV+ QA+ + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVTLEQAMHEVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ + ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +RG+ VDL+ + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 ERGIDVDLNNMTFDDNKTYQMLCQGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS + A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAVANNISASQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 VISYQTA++K +YP EFL A + LE++N +KI F Q+A+ I+I+ P++N F V Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFIV 824 Query: 831 G--------------------------------------------DNRI----------- 835 +N I Sbjct: 825 KSVIPQAVTCHSHEVLCHTRVGVDPEKISEMKMDDYFRGNDKEGTENDIKSCEYDKEVSA 884 Query: 836 -YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 ++L AIKGV + + + PF S+ DF R+ K +N ++LE+L+ +G D Sbjct: 885 IIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGCFDE 944 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 +R+QL S+ + YA K + + ++ K + L + + + Sbjct: 945 LHDNRLQLFLSIPKLLSYATSYHKEQASNQFSL---IKVSSLSPTILIDSNYADKNTLAF 1001 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRK 1011 E +G + S HPL Y+ I ++ I + + + LA ++ K + + + Sbjct: 1002 YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLHNKLPYGTTRVNLAGVIQKKDSRMSVR 1061 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G R + S+P +E + F Sbjct: 1062 G-RFVTLVLSDPENIFELSIF 1081 >gi|254233973|ref|ZP_04927298.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|124599502|gb|EAY58606.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] Length = 1079 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 282/1038 (27%), Positives = 482/1038 (46%), Gaps = 62/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 42 SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + T + + P P P +++L EGY+RL ++ +L K Sbjct: 102 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A + L F + + Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVAQALPQSGPTADAAALPDLVDPFTPSAVSIE 215 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D R + + LA + +VAT + F + A+ + Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 ++++ EM +F+ PEA+ E+ RC+F LQ+ AP LP F + Sbjct: 276 GWLAPLGGAHVRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ +AG R A ++Q ++ EL VIA+++F GYFL+V D Sbjct: 333 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ + N+I GRGS A S YAL +T +DP+ LLFERFL+P R PD DID Sbjct: 387 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV +KYG + AQ+ + + ++A+RD+ RAL Q D K + + Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 506 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ ++ V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP + P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + +AW Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ A+ PF SL D SRV +L+ +E+L AGAL CFG Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 908 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ E + G+ + +A V +Q+ T +G + Sbjct: 953 VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1011 TFINLEDETGMVNVLCTP 1028 >gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264] gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264] Length = 1151 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 345/1043 (33%), Positives = 558/1043 (53%), Gaps = 40/1043 (3%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL+VH+ YSLLEG + +++ +A+TDT ++F +EF +K +GI+P+I Sbjct: 6 VHLKVHTEYSLLEGVGKIEEYVERAKFMGIKTLAVTDT-SMFGVIEFYKKCIKSGIKPVI 64 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++ +D S+ LL +GY+ + +S + ++ +I Sbjct: 65 GLEVFLD-----------GIVSEGEYSLTLLAKNKKGYRN-LSKLSSLSYSRFNRRRNKI 112 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 L E ++ L +L+GG I + A+K + K F + ++ + + Sbjct: 113 KYEELLEYSSD-LYILSGGIHSEIIKGISEYKYPEAKKVAVKLAKDFKENFFLEVPAVKR 171 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + R + ++ + + TN+ + ++ + ++ ++ + D Sbjct: 172 LESVR-KSLKEMIKEISVGYLITNDVYYPNKGEAVLQKIMSSIKEGNKIETVQNDIFYDD 230 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 YLK+ E+ F E + ++ + + E + Sbjct: 231 LYLKSFDEIKESFLQDEEFFDEGMKNTVILAENCNTDFEFDVFKFPEYELPEGISESFYI 290 Query: 312 RNKAVAGLEVRLAQGAIAK--------------GYHAQDYRQRLDFELNVIARMKFSGYF 357 R G+ + + I +D +R D+EL VI M ++GYF Sbjct: 291 RKLVYEGIAKKYLKENIEITTEDQENEIRKKLIAKDREDVFKRADYELEVINSMGYNGYF 350 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 +IV DFI++AK++ + VGPGRGS AGS+ +YAL IT+IDPL+++L+FERFLNP+R+SMPD Sbjct: 351 IIVWDFIKFAKESGVYVGPGRGSAAGSLVSYALNITEIDPLKYNLIFERFLNPERISMPD 410 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 DIDF Q++R+ VI YV NKYG++ VA IITFG+L+A+AA+RDVGR L + +VD+ K Sbjct: 411 IDIDFDQEQREIVIDYVLNKYGNKYVAHIITFGTLKARAAIRDVGRVLNVSLKKVDKAAK 470 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 LIP + +A+ RE +D + +++ S K+EG RHAS HAAG+VI Sbjct: 471 LIPFNM---DLEKALDSVGSLREMYNSDNEIKTMIDYSLKIEGRVRHASVHAAGVVISKD 527 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKV 596 L + +P Y D ++ + TQ+ MK +E+ G++K DFLGLK LT+L+K+++ +G + Sbjct: 528 VLDEEIPTYSDGKTPILSTQYQMKELEELGILKMDFLGLKNLTILRKTIENIEKNKGEIL 587 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 I ++ + Y L+T TLGIFQ ES G+R+ ++ ++ + EDI AL++LYRPGP+ Sbjct: 588 RTENINLENKKAYKLMTEADTLGIFQCESPGIRKLMKKLKIEKFEDITALLALYRPGPLQ 647 Query: 657 NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + + KN + KI + +L+ET GVI+YQEQVM+IA ++ YSL EAD LR Sbjct: 648 SGMVEDFIAAKNAEAKIKYPDESLKEILEETYGVILYQEQVMKIASEMAKYSLGEADQLR 707 Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 RA+GKKI +++ +E+F+ A +N +S+ A I+ L+ KF YGFNKSH+AAYA+I Y Sbjct: 708 RAIGKKIPAIIEENREKFVKKAQENNVSREKADRIYNLIDKFGGYGFNKSHSAAYALIVY 767 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 TA+ K +YP+EF AA MT EM N+E++ F +AR I+I+ P VN DFKV ++ Sbjct: 768 WTAYFKANYPLEFFAAIMTTEMYNIERLSLFINEARGKGIEILVPDVNLSDYDFKVEESG 827 Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 I + L AIKGVG R IME F S EDF R+ + LN++ LESL+ +G+LD Sbjct: 828 IRFGLVAIKGVGGNFVREIMEERESGIFVSYEDFVYRMKQRGLNKKQLESLILSGSLDNL 887 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 +R + +S++ + +++Q ++ + +F + D ++K + S+ +N Sbjct: 888 DGNRKEKTESINKVMEWSQKKYESEEDLQMILFGGKSKKIGD-FQMDKTEEYSQSILLKN 946 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGN--NIRLAAMVVSKQQKKTR- 1010 E+ LG Y S HPLD K + E+ G IR+ ++ + + T+ Sbjct: 947 EREYLGIYVSSHPLDEKKDYFEMIEHTKISETEVRNKSGKFDKIRIMGVIKNLNKIVTKL 1006 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 G + + E FP Sbjct: 1007 SGEPMAKFELEDATGAMEVICFP 1029 >gi|254776764|ref|ZP_05218280.1| error-prone DNA polymerase [Mycobacterium avium subsp. avium ATCC 25291] Length = 1093 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 278/1038 (26%), Positives = 478/1038 (46%), Gaps = 60/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S + L HS++S L+G + ++++ A A+A+TD + L+ A+ F++ A Sbjct: 54 SSVPYAELHAHSAFSFLDGVSTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + + P P P +++L AEGY+RL ++ +L K Sbjct: 114 VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGAEGYRRLSRQLAVAHLAGGEK 167 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R L L E +LTG G + +A A + L FG R+ + Sbjct: 168 GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIE 227 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L RH D R + + LA + +VAT + F + A+ + Sbjct: 228 LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAA 287 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +F+ PEA+ E+ +C+F L + AP LP F + Sbjct: 288 GWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR + G R A +++ EL VIA+++F GYFL+V D Sbjct: 345 -HTEDSWLRQLTMTGARDRYG-----SPERAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 ++ ++NNI GRGS A S YAL +T +DP+ LLFERFL+P R PD D+D Sbjct: 399 ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV ++YG + AQ+ + + K A+RD+ RAL Q D K I + Sbjct: 458 SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQISSWS 517 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +AD ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 518 G-------LADSPDVEGI------PPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L ++D +A+ ++VDLS + Sbjct: 565 PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLSRLD 624 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 625 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + ++ HP ++P L++T GV ++QEQ+MQ+A +G+S +EAD LRRAM K Sbjct: 685 YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + +E L FA++GF +SHA ++A + + ++W Sbjct: 745 RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + + Sbjct: 805 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A +++ + PF SL D +R+ L+ E+L AGA CFG Sbjct: 865 LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARLH---LSVPQTEALATAGAFGCFG 921 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + + Sbjct: 922 MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L MG+ + G+ + +A V +Q+ T +G + Sbjct: 967 VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042 >gi|161378129|ref|NP_745263.2| error-prone DNA polymerase [Pseudomonas putida KT2440] Length = 1026 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 283/1037 (27%), Positives = 456/1037 (43%), Gaps = 78/1037 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S + + + A+AITD L + Q A Sbjct: 2 NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ I+G ++ + P +VLLV GYQ L L++R + K Sbjct: 62 LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104 Query: 127 QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + ++ L + +GL+ L SG + +F +RL++ Sbjct: 105 GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 150 Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + HRG D R ++ LA + VA + D + A+ VS+ Sbjct: 151 VHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 210 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + RS+ + L T+ IARRC F L PR + E Sbjct: 211 RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR G+ +R G + R L EL +I + + YFL V D + Sbjct: 266 HTPASWLRELCEQGMPLRWPDG------PSGKVRDVLAKELGLIEELGYESYFLTVHDIV 319 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF Sbjct: 320 AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVI+YV +YG R A + A A+RDV RAL +P QVD L K Sbjct: 379 DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 438 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q +A+ PS+ R+L ++ +L G RH S H G VI +PL QLVP Sbjct: 439 RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 494 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603 + + V Q++ ++ GL+K D L L L+ L++ RG + L+ IP Sbjct: 495 VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATIPS 554 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 555 EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 614 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ +E + P + + + T GV ++QEQVM++A + + Y+ EAD LRR+M Sbjct: 615 LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 674 Query: 722 KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + +ER + G +NG + A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 675 RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 734 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835 H P F A + + Q+AR+ I++ P V D + + I Sbjct: 735 CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 794 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++G+ A+ + +A + +P+ ++ED C R L+ R L GAL Sbjct: 795 RMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 851 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + + +FA + + + L V + Sbjct: 852 SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 896 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG HPL + + LR +G + E G+NI +A +VV +Q+ +T G + Sbjct: 897 YQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 954 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 955 TFVTLEDEHGMVNVVVW 971 >gi|71151833|sp|Q88I82|DNAE2_PSEPK RecName: Full=Error-prone DNA polymerase gi|24984742|gb|AAN68727.1|AE016504_10 DNA polymerase III, alpha subunit, putative [Pseudomonas putida KT2440] Length = 1033 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 283/1037 (27%), Positives = 456/1037 (43%), Gaps = 78/1037 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + L S++S GA S + + + A+AITD L + Q A Sbjct: 9 NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 68 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ I+G ++ + P +VLLV GYQ L L++R + K Sbjct: 69 LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 111 Query: 127 QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 + ++ L + +GL+ L SG + +F +RL++ Sbjct: 112 GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 157 Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 + HRG D R ++ LA + VA + D + A+ VS+ Sbjct: 158 VHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 217 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + RS+ + L T+ IARRC F L PR + E Sbjct: 218 RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 272 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + LR G+ +R G + R L EL +I + + YFL V D + Sbjct: 273 HTPASWLRELCEQGMPLRWPDG------PSGKVRDVLAKELGLIEELGYESYFLTVHDIV 326 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+ I GRGS A SV + L IT++DP++ LLFERFL+ +R PD D+DF Sbjct: 327 AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 385 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 DRR+EVI+YV +YG R A + A A+RDV RAL +P QVD L K Sbjct: 386 DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 445 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 Q +A+ PS+ R+L ++ +L G RH S H G VI +PL QLVP Sbjct: 446 RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 501 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603 + + V Q++ ++ GL+K D L L L+ L++ RG + L+ IP Sbjct: 502 VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATIPS 561 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 562 EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 621 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ +E + P + + + T GV ++QEQVM++A + + Y+ EAD LRR+M Sbjct: 622 LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 681 Query: 722 KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + + +ER + G +NG + A IFE + F YGF +SHAA++A++ Y ++W+K Sbjct: 682 RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 741 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835 H P F A + + Q+AR+ I++ P V D + + I Sbjct: 742 CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 801 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++G+ A+ + +A + +P+ ++ED C R L+ R L GAL Sbjct: 802 RMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 858 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + + +FA + + + L V + Sbjct: 859 SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 903 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 + LG HPL + + LR +G + E G+NI +A +VV +Q+ +T G + Sbjct: 904 YQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 961 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 962 TFVTLEDEHGMVNVVVW 978 >gi|300767496|ref|ZP_07077408.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495315|gb|EFK30471.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1116 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 325/1026 (31%), Positives = 522/1026 (50%), Gaps = 39/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ A+A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T +++ LY+ + Sbjct: 114 AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQVVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + Sbjct: 169 QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + + V L V + QV + + + Sbjct: 227 EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A + Sbjct: 286 YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR++ Sbjct: 344 AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN + Sbjct: 404 VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 R + L E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 464 A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608 + +TQ+ +E GL+K DFLGL+ L+L+ +L + Q G + ++ I +D T Sbjct: 522 SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK G+ Sbjct: 582 LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +DK Sbjct: 642 EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY F Sbjct: 702 RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 762 TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +++ A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 822 FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + A ++F ++K + R E LG Y SGHP Sbjct: 882 LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ Y L + ++ + + +T++G + + T S+ + E Sbjct: 931 VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987 Query: 1028 EANFFP 1033 + FP Sbjct: 988 DLTIFP 993 >gi|221635931|ref|YP_002523807.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159] gi|221157507|gb|ACM06625.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159] Length = 1059 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 306/1052 (29%), Positives = 490/1052 (46%), Gaps = 84/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS +SLL+ ++ + AA +A+TD + L + F + A GI PI Sbjct: 5 YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHPI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------- 121 +G ++ ++ + LL GY L L+S L Sbjct: 65 VGAEITMEDGS----------------HLALLAEDERGYATLARLLSAARLGWPTPEGPG 108 Query: 122 -------LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174 +++V + WL + +GLI+LTG GP+ RA + A R Sbjct: 109 SEDTALAGSPARRAVALPWHWLVD-HHDGLIVLTGCRQGPLARALTEGNRADALARAHWL 167 Query: 175 KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++FG +R +V LQ H DR R +++ LA T LPLVAT N +L + DVL+ Sbjct: 168 ARVFGPERCFVELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLV 227 Query: 233 AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + + R + + L + M F P+A+ NT IA RC L Sbjct: 228 CIREGITIETPHPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVR 287 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P + LR +A G + G ++ ++L+ EL VI R+ Sbjct: 288 FPP--LPHLVPPGETPMQVLRRQAYEGAQR-------RYGQLSEPVVRQLEHELGVIERL 338 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + +FLI AD G GRGS A S+ AY L IT +DPL LLFERFLN + Sbjct: 339 GVAEFFLICADLAN------RFRGRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEE 392 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R SMPD DIDF + R+ I YV YG E A + + + QA++A+RD+GR L +P Sbjct: 393 RPSMPDIDIDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEI 452 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 +D L K + + A A R + L+ + +LE + RH S H G Sbjct: 453 IDELAKSQGR-LGEALPVLARALAPRLSP--DLRRRLAWLVRLVPQLEDIPRHLSVHVGG 509 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 +VI RP+ + + V ++ + IE+AGLIK D L ++ ++++ ++++ + Q Sbjct: 510 MVIAGRPVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQ 569 Query: 592 -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 G+++DL +P DD Y LL T T+G +Q+ES +Q+L P+ ED+IA V++ Sbjct: 570 ASGLRIDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAII 629 Query: 651 RPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGPI +V+ + + E + +HP ++P+L+ET GVI+YQEQV+++A ++G + Sbjct: 630 RPGPIQGGMVHPYIRRRRGLEPVRYLHPKLEPILRETLGVILYQEQVLEVAMAIAGMTAG 689 Query: 709 EADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 +AD RRAM K+ + M+ + F++GA +NG+++ +A IFE +A FA+YGF KSHAA Sbjct: 690 QADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKSHAA 749 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 A A +Y+T W++ HYP L A + + + DA + I ++PP V Sbjct: 750 ALARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLASAAR 809 Query: 828 FKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 + + L A++GVG A I+ A +++PF D R +L +E Sbjct: 810 STLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEPFRDTADVVRRA---QLTPEQVE 866 Query: 884 SLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 +LV GA D R +LL L V R + + + L Sbjct: 867 ALVLVGAFDRLAPDRSRRELLWDL-------LAVATERPERPRLL-----DVSEPAVRLP 914 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + ++ + + +LGF H +++Y+ R + + G R+A +V Sbjct: 915 EL---DTVEQTFLDYAILGFCLDRHLMELYRAQRRILRVTPAARLRTLPPGATARVAGLV 971 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V +Q T +G + ++T + P Sbjct: 972 VCRQAPPTARG--VLFLTLEDETGLVNVIVPP 1001 >gi|296161200|ref|ZP_06844009.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] gi|295888541|gb|EFG68350.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1] Length = 1049 Score = 609 bits (1569), Expect = e-171, Method: Composition-based stats. Identities = 267/1046 (25%), Positives = 447/1046 (42%), Gaps = 64/1046 (6%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + P++ L S+++ L GA + ++ A+A+TD +L + Sbjct: 1 MDSTFSTLPAYAELFCFSNFTFLHGASHAEELAERAEQLGYAALAVTDECSLAGVVRAHV 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A A + I+G + D ++LL EGY L EL++ Sbjct: 61 AAKEAKLPFIVGSYFRLVNADG-----------SPAFGLILLARNREGYGNLSELITLAR 109 Query: 121 LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 K R+ L E L L + + F V ++ F Sbjct: 110 TR-APKGEYRLTPQDLSRPDRENRHLRGLPDCLAILVPD--FPAKEDVLAAQVEWLDDTF 166 Query: 179 GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 R +V L H R D V +A ++P+VA N + D + A+ Sbjct: 167 TGRAWVGLVLHQRAMDDIHRGSVEFVARNQDVPVVALGNVVMHVRSRKPLQDTMTAIRVR 226 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 V + +T + RS + +AL TV+IA RC+F L P + Sbjct: 227 RPV-HECGYDLTQNAEQHLRSRLRLANLYPDDALAATVDIASRCAFSLDELRYEYPDELV 285 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 LR + G + R G +++++ EL +IA +++ YF Sbjct: 286 PTGF----TPTAYLRQETYIGAQRRFPSG------IPHKVQEQIEHELELIADLQYEPYF 335 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L V D +++A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD Sbjct: 336 LTVYDIVRFARSQSIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPD 394 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF RR+EVI+Y+ KYG +R A + + + ALR+ G+AL + VD + K Sbjct: 395 IDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDVVAK 454 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 L + P + +++ +L G RH S H+ G VI Sbjct: 455 SHHWFDTSQDLLARFRES----GLDPEKPLIQAWAKLASQLLGFPRHLSQHSGGFVISRG 510 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKV 596 L++LVP+ D V +++ +E GL+K D L L L+ ++++LD QRG + Sbjct: 511 KLTRLVPVENAAMEDRSVIEWDKDDLEALGLLKIDVLALGMLSAIRRALDIVSEQRGERF 570 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 ++ IP +D +TY +++ T+G+FQ+ES L MQP D++ V++ RPGPI Sbjct: 571 EMQDIPAEDPQTYEMISAADTVGVFQIESRAQMSMLPRMQPRTFYDLVIEVAIVRPGPIQ 630 Query: 657 NIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 V+ + + E + + L T GV I+QEQVMQ+A L +G++ EAD LR Sbjct: 631 GGAVHPYLQRRQGFEPVSYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLR 690 Query: 715 RAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RAM K ++K +R + G + G + A +IFE + F +YGF +SHAA++A++ Sbjct: 691 RAMAAWKRKGGLEKYYDRIVHGMQERGYTLAFAESIFEQIKGFGEYGFPESHAASFALLV 750 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832 Y ++W+K H P FLAA + + + QDA++ ++++P V D + + Sbjct: 751 YASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWDSALVNL 810 Query: 833 -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + ++ ++G+ A I A A +PF+S+ D R +L+R+ L L Sbjct: 811 QGAGRPAVRLGMSLLRGMKDGAAERIENARAVRPFESVNDLARRA---QLDRKDLHVLAD 867 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 A AL +R + L T + + Sbjct: 868 ANALTSLAGNRREALWQSVAAVPDR----------------DMLATAAVQDETPALGAPT 911 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + + R +G HPL++ +P L + G R +V +Q+ Sbjct: 912 EANDIVADYRSVGLTLGRHPLELLRPQLLAKRLMPASTLRTYRDGRLARGCGLVTVRQRP 971 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T KG + +VT + +P Sbjct: 972 GTAKG--VMFVTLEDETGNVNVIVWP 995 >gi|70731058|ref|YP_260799.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf-5] gi|78099245|sp|Q4KAD4|DNAE2_PSEF5 RecName: Full=Error-prone DNA polymerase gi|68345357|gb|AAY92963.1| DNA polymerase III, alpha subunit, putative [Pseudomonas fluorescens Pf-5] Length = 1034 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 282/1044 (27%), Positives = 460/1044 (44%), Gaps = 86/1044 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S GA S + + A A+AITD L + Q + G++ Sbjct: 2 SAYAELHCLSNFSFQRGASSAAELFQRAKALGYQALAITDECTLAGIVRAWQASRDTGLK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ ++ P +VLLV GYQ L L++R + K S Sbjct: 62 LIVGSEMQVEDG----------------PRLVLLVEDLAGYQGLCRLITRARRRAE-KGS 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ E GL+ L +G +++F RL++ L+ Sbjct: 105 YRLLREDFAEPLP-GLLALWLTGAGE---PLAQGR---------WLQQVFPQRLWLALEL 151 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D Q + LA LP VA + D + A+ H V++ + R Sbjct: 152 HCGQDDARHLQQQLALARQLGLPAVACGDVHMHVRGRRALQDTMTAIRHHLPVAEAGQ-R 210 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + R V L+ ++ IA RC+F L PR + E D Sbjct: 211 LFANGERHLRPVEVLQGLYPQALLDESLAIAGRCAFDLGQLRYQYPRELVPEGHDAG--- 267 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR G+ R GA A + +++D EL +I + + YFL V D + +A Sbjct: 268 -SWLRVLTQRGIVRRWPTGARA------EVLKQIDKELTLICDLGYESYFLTVHDIVDFA 320 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ +I GRGS A SV +AL IT+IDP R +LLFERFL+ +R PD D+DF +RR Sbjct: 321 RRQHIL-CQGRGSAANSVVCFALGITEIDPDRSTLLFERFLSRERNEPPDIDVDFEHERR 379 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++Y+ +YG R A + A+RDV +AL +P QV+ L + P Sbjct: 380 EEVLQYLFQRYGRHRAALTAVVSTYHGAGAVRDVAKALGLPPDQVNALADCCGHWSDTPP 439 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S++ + + P + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 440 SVERLQE----AGFDPQSPVLRRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDHLVPVEN 495 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 ++ V Q++ ++ GL+K D L L L+ +++ D + RG + L+ IP +D Sbjct: 496 ATMAERTVIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLIHGYRGQRYSLASIPPEDP 555 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 556 ATYEMIGRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLRR 615 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +N +E P ++ +LK T GV ++QEQVMQIA + + Y+ EAD LRR+M + Sbjct: 616 RNRQEPETYPSPELEGVLKRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHG 675 Query: 725 M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + +ER G ++NG S A IFE + F YGF +SHAA++A+++Y + W+K H Sbjct: 676 GLEPHRERLRRGMNRNGYSDEFATQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHE 735 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------ 831 P F A + + QDAR+ +Q++ V D + Sbjct: 736 PAAFACALINSWPMGFYSPDQILQDARRHGLQVLAVDVGASDWDCSLEPIPVQPARAGNG 795 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + L IKG AR I A + F + D R +L+ R E L A Sbjct: 796 PPGQPALRLGLRMIKGFREDDARRIERARRQRAFVDIADLGERA---RLDVRAQELLADA 852 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GAL R + + +++ +FA + L + + Sbjct: 853 GALQALAGDRYRARWEVAGVER------------QLGLFAGLPSQEEAPVALPR---PSV 897 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + LG HPL + +P L + + +A G ++ +A +V +Q+ Sbjct: 898 GEDLQADYHSLGTTLGPHPLALLRPQLAARRCRSSRDLLAVEHGRSVSVAGLVTGRQRPG 957 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T G + +VT + + Sbjct: 958 TASG--VTFVTLEDEFGNVNVVVW 979 >gi|229591045|ref|YP_002873164.1| error-prone DNA polymerase [Pseudomonas fluorescens SBW25] gi|229362911|emb|CAY49821.1| putative DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25] Length = 1030 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 286/1033 (27%), Positives = 453/1033 (43%), Gaps = 76/1033 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ L S++S GA S + ++ A+AITD L + Q A A + Sbjct: 9 SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPL 68 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ I+ P +VLLV GYQ L L++ + K S Sbjct: 69 IIGSEVRIENG----------------PKLVLLVEDLSGYQHLCRLITLARRRAE-KGSY 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L + GL+ L + ++ F +RL++ + H Sbjct: 112 RLLLEDFDQPLP-GLLALWVAEDSDTQ------------ASIQWLRRTFAERLWLAVHLH 158 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D +R Q + LA + +P VA + + D + A+ H V++ R+ Sbjct: 159 CGQDDAHRLEQRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+ RS L+ T IARRC+F L PR + E D E Sbjct: 218 HPNGERHLRSLDALAALYPHALLDETQAIARRCTFDLSQLRYHYPRELVPEGHD----AE 273 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR AG+ R QG A Q++ EL +I+ + + YFL V D +++A+ Sbjct: 274 SWLRAVTEAGIAQRWPQGVDAHT------LQQIHKELALISELGYESYFLTVHDIVRFAR 327 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S +AL IT+IDP S+LFERFL+ +R PD D+DF +RR+ Sbjct: 328 SRSIL-CQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERRE 386 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV++YV +YG R A S A A+RDV +AL +P QV+ L Sbjct: 387 EVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAPP 446 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 L+ + + P + R+L ++Q+L G RH S H G VI + PL LVP+ Sbjct: 447 LERLRE----GGFDPQSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENA 502 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ +++ D R L+ +P +D Sbjct: 503 AMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDFSLASLPKEDPA 562 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R+ Sbjct: 563 TYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRR 622 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N +E+ P ++ +L+ T G+ ++QEQVMQIA + + Y EAD LRR+M + Sbjct: 623 NKEEETTYPSPELEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGG 682 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +ER +G KNG S+ A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 683 LEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 742 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839 F A + + QDAR+ +QI P V D + I L Sbjct: 743 AAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRMGL 802 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 I G+ R I A F + D +R L+ R L AGAL +R Sbjct: 803 RMIAGLREEEGRRIETARERGVFSDIADLDARA---GLDARTQALLADAGALRALADNRH 859 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + + + K +FA + L + + + Sbjct: 860 KARWEVAGVHK------------QLGLFAGLPSPDEAVVALP---APTVGEDLQADYATV 904 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G HPL + + LRK + +E + G N+ +A +V +Q+ T G + +VT Sbjct: 905 GTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTASG--VTFVT 962 Query: 1020 FSEPAKEYEANFF 1032 + + Sbjct: 963 LEDEFGNLNVVVW 975 >gi|228982552|ref|ZP_04142811.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407] gi|228776735|gb|EEM25043.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407] Length = 1237 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 331/1068 (30%), Positives = 534/1068 (50%), Gaps = 71/1068 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +V L H+ YSLL+GA ++ ++ K A AITD ++ L+F +K A +P Sbjct: 73 RYVSLHGHTGYSLLDGATKIHEMVAKT-EW---ASAITDHGVMYGTLDFYKKMKKANKKP 128 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + I+ D K +LL A GY+ L++L S + + Sbjct: 129 ILGFEAYIETLDGKKEGK----------HQLLLAINATGYRNLVKLTSMGF--ENKYYKP 176 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 + L WL++ +EG++ + G + +A +A K + +FG + Y+ +QR Sbjct: 177 HVKLEWLEKY-SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQR 235 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246 H + ++QLA L +AT++S + ED H++L+ + T + +R Sbjct: 236 HGCEEEEVVNPALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMV 295 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +++ EM +F D+PE L+NT+++A R + +Q+ LP F E + Sbjct: 296 FPGSGYHIHTSEEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGF---ES 352 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + + + A G R K + +++YR+RL FE+ I M F GYF+IV DFI++ Sbjct: 353 QADYFEHLAWEGFAKRFKG---QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRF 409 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 AK+ I VGPGRGS GS+ AYAL ITDIDP+ + L+FERFLNPDR+SMPD DIDF R Sbjct: 410 AKERGILVGPGRGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTR 469 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI YV+ YG E V++IITFG+L AK ++RDV R L P + + IP P Sbjct: 470 REEVIDYVKELYGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMT 527 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM- 545 + +A+ + F +D V +++I+ ++EGL R+ S HA G++I ++ +P Sbjct: 528 L-NKALNESPEFYNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQV 586 Query: 546 ---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597 D + TQ+N E+ GL+K DFLGL+T+ ++ ++ + ++ + Sbjct: 587 LLENTDTGAYEHTTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPIT 646 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE-----------GMQPDCIEDIIAL 646 L IP DD Y + T G+FQLES+GM + M E +IA Sbjct: 647 LESIPLDDIRVYEYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAG 706 Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 +SLYRPGP+D I Y E I P + P+L+ T +I+YQEQ M I + L+ ++ Sbjct: 707 ISLYRPGPLDEIPNYIKNMLKPEGIEYDVPQLQPILETTYNIIVYQEQCMFIVRELANFT 766 Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFAD 758 ++D +R+ M KK++ +++ E F+ G NGI + IA+ ++E + KF Sbjct: 767 RGQSDTIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGR 826 Query: 759 YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818 Y FNKSHA YA I+ +T ++ +YP E++ A++ + +KIK + +++ I ++P Sbjct: 827 YAFNKSHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLP 886 Query: 819 PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKL 877 P VN F V N I + L I+ +G + R I E F + +D R +K+ Sbjct: 887 PDVNKSREVFTVEGNSIRFGLQGIRNMGKISIRLIEERDTRGDFRNFQDCAVRMAKYQKV 946 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFS 935 +RRVLE+L+F+GA+D F +R L LD + A K+ + +IF Sbjct: 947 DRRVLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKI 1006 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN- 994 ++ + N + E E+ GFY S HPLD Y+ +L + T + Sbjct: 1007 REVLTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEA 1066 Query: 995 ---------IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032 IR+A ++ + T+K + + E + F Sbjct: 1067 DRVRSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAF 1114 >gi|308180707|ref|YP_003924835.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046198|gb|ADN98741.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1116 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 325/1026 (31%), Positives = 522/1026 (50%), Gaps = 39/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ A+A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEINPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L++L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMQLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + Sbjct: 169 QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + + V L V + QV + + + Sbjct: 227 EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A + Sbjct: 286 YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR++ Sbjct: 344 AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN + Sbjct: 404 VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 R + L E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 464 A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608 + +TQ+ +E GL+K DFLGL+ L+L+ +L + Q G + ++ I +D T Sbjct: 522 SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK G+ Sbjct: 582 LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +DK Sbjct: 642 EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY F Sbjct: 702 RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 762 TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +++ A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 822 FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + A ++F ++K + R E LG Y SGHP Sbjct: 882 LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ Y L + ++ + + +T++G + + T S+ + E Sbjct: 931 VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987 Query: 1028 EANFFP 1033 + FP Sbjct: 988 DLTIFP 993 >gi|134093911|ref|YP_001098986.1| putative DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans] gi|133737814|emb|CAL60859.1| Error-prone DNA polymerase [Herminiimonas arsenicoxydans] Length = 1045 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 279/1041 (26%), Positives = 464/1041 (44%), Gaps = 71/1041 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S+++ L+GA ++ + ++AITD +L + +A + Sbjct: 6 PAYAELHCRSNFTFLQGASHPEELVQRACDLGYDSLAITDECSLAGVVRAYVEAKKHNLH 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + +V L + GY L EL++ K Sbjct: 66 LIIGSDITLSCG----------------TRLVFLATNRNGYGNLSELITLGRRRAD-KGF 108 Query: 129 VRICLSWL-----QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + S L QE + L L + I + + ++ + F R + Sbjct: 109 YTLHRSDLDPDERQEPNSIHLAQLPDCLAILIPKCCCSR--EEIARQAAWLARTFVGRAW 166 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 V + H D Y + +A +LPLVAT + L D L AV V++ Sbjct: 167 VAAELLHWSDDEYWLDLLTGIAAEMDLPLVATGDVLMHVRSRKPLQDTLTAVRLGKSVAE 226 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RS + PE L+ T+ +A+ C+F L P I + Sbjct: 227 CGMDLQPNA-EQHLRSRLRLAQLYSPELLQETLTLAKLCTFSLDELRYQYPEEIVPAGET 285 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R + I + RQ+++ EL +I + + +FL V D Sbjct: 286 LS----SYLRRLTYEGATQRRFRQGI-----PANIRQQIEHELVLITELNYEPFFLTVYD 336 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ I GRGS A SV Y L IT++DP R S+LFERF++ +R PD D+DF Sbjct: 337 IVKFARSKGIL-CQGRGSAANSVVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDF 395 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+Y+ NKYG R A + + ++A++DVG+AL + + QV+RL + Sbjct: 396 EHQRREEVIQYIYNKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQVNRLSQSHKWW 455 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 +S + + + P V +L+E+++ L G RH S H G VI L++L Sbjct: 456 DGREISDERLQE----GGFDPQAPIVQKLVELTKTLIGFPRHLSQHTGGFVIARDSLARL 511 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601 VP+ D V +++ ++ GL+K D L L L+ +Q++L+ + +RG V++ I Sbjct: 512 VPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIQRALEMISTRRGRMVEMQDI 571 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 572 PSEDPLTYEMISAADTIGVFQIESRAQMSMLPRLRPQKYYDLVVQVAIVRPGPIQGGMVH 631 Query: 662 NN---RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 R + IV P I L T GV I+QEQVMQIA L +GY+ EAD LRR+M Sbjct: 632 PYLKQRHMHPDDIVYPGPEIKEALSRTFGVPIFQEQVMQIAVLAAGYTPGEADELRRSMA 691 Query: 719 KK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K ++K ++ G +KNG A +FE + F +YGF +SHAA++A++ Y +A Sbjct: 692 AWKRKGNLEKHGDKLKKGLAKNGYDPEFANRLFEQIKGFGEYGFPESHAASFALLVYVSA 751 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----- 832 W+K H P FLAA + + + QDA++ + + P V ++ + D Sbjct: 752 WIKRHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPIDVLISELESTMEDIHERY 811 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + L +KG+ A+ I+EA A + F ++D R + L++ L +L A AL Sbjct: 812 PAVRLGLHMVKGLSLDGAKRIIEARAHQSFKDVDDLARRAE---LDQHELGALARANALL 868 Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952 R Q + + A + ++ + E + + Sbjct: 869 PLSGHRRQAKWEVAAMM-SAPMLLRDAPIREEPLL---------------LPAASEGQEI 912 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + G + HPL + +P L+KM + E R +V +Q+ T KG Sbjct: 913 VADYASTGLTLNRHPLALLRPRLKKMNLSTALEMKGFADRKIARTTGIVTMRQRPPTAKG 972 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + +VT + +P Sbjct: 973 TM--FVTLEDETGITNVIIWP 991 >gi|309775411|ref|ZP_07670414.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916800|gb|EFP62537.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 1026 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 352/1025 (34%), Positives = 574/1025 (56%), Gaps = 43/1025 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ L++ I A+A+TD + + A+ F I+PI Sbjct: 3 VHLHVRSCYTLLQSTLTVAKIAAAAKRCGYTAVALTDKHVMHGAMAFYHACKKEQIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++D+ +D++ VLL GYQ L++L + + ++ + + Sbjct: 63 GMEVDVLEKDDV-------------YGFVLLAKNDHGYQNLMKLSTWLNTGEETR---TL 106 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 L L + I++T G ++ + L + F D YV + R+ Sbjct: 107 DLDTLAFYAKDC-IVITNGDQNQMETLIVKEELDLLRHWLKVCQAQFAD-FYVAVSRNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G + + + QL +P A + F ED E++ L A+ + K +P Sbjct: 165 GLMQKKNPVLKQLCKELGIPYTALSRVYFEYAEDEESYKTLCAIDQGVSLQDKMLN-YSP 223 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 Y ++ +EM +++ D A+ + IA C+ + +LP+F K E Sbjct: 224 RRYFRSPAEMQALYEDEELAMSD--HIAAMCNVEMSFPKAVLPKFHNKYGV----SSEEF 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR+ GL+ R+ I+ Y+QRLD+EL+VI RM+++ YFLIV DFI++AK Sbjct: 278 LRSLCQKGLQKRMQFQTIS-----DVYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF +RRDEV Sbjct: 333 HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 IRYV+ YG RV+ IITF +L AK LRDVG+A+++ Q+DRLCKL+PN + Sbjct: 393 IRYVEELYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVLKATLDFA 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 ++ RF+E ++ RL +++KLEGL RHAS HAAGIV + + Q+ P+ DV Sbjct: 453 -YHNEPRFKEIINNGETMGRLYAVARKLEGLPRHASLHAAGIVFSNEDIEQVCPLI-DVD 510 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 + TQF M+++E+ GLIK DFLGL+ LT++ + + A K+D+ IP DD +TY Sbjct: 511 EGVCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINAASDQKLDIMHIPLDDPKTY 570 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L+ T+G+FQLES GM+ + MQP EDI+A ++L+RPGP++NI Y +R+ E Sbjct: 571 ALIRAVDTVGVFQLESEGMKNLIRKMQPKSFEDIVATIALFRPGPMENIPEYLDRRAHPE 630 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK +E+ K + Sbjct: 631 KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGDELQKMR 690 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 E FI GA + G ++ +A ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 691 EEFIQGALQKGYTEALAQRVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 + + + + K ++ +AR+ IQI+ P VN C + + +N + + IKG+G+ Sbjct: 751 SLLNSVIGSETKTSEYVFEARKRRIQILLPDVNRSCNQYVIEENALRFPFVGIKGIGSAV 810 Query: 850 ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I+E F DF +R++ K+ ++ +E L++AGALDCF ++R L+ SLD+ Sbjct: 811 SSQIVEERKKKGQFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKFARASLMASLDDA 870 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +YA V+ ++ +F + + ++ N+++R E E+ +GFY S HP+ Sbjct: 871 LRYADLVKIEDVDQV--LFDFDLVSKPAMTVVKD----NAAIRAEKEKEAIGFYLSRHPI 924 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + + S+ +G ++ ++ +Q +T+ G + +V S+ +++ Sbjct: 925 ADVRSKMGRE--LPVLVSLPKHKGRYVKFVCLIDRCRQYRTKNGDMMMFVVGSDETGKFD 982 Query: 1029 ANFFP 1033 P Sbjct: 983 LVCMP 987 >gi|313637979|gb|EFS03276.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL S4-171] Length = 962 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 359/996 (36%), Positives = 561/996 (56%), Gaps = 41/996 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHLQV S+Y LL S+++++ K PA+AITD N L+ A+EF QK AA I+PI Sbjct: 3 FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + I QG ++L+ T GY L+++ S + ++G++ + Sbjct: 63 IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 SWL+ +E LI ++ G+ G ++R + A + +FG D +Y++LQ+ Sbjct: 113 ---SWLRAY-SEDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ ++ VAT N ++ +D +A +VL A+ + V + P Sbjct: 169 NP---RLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225 Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+++ +D + E T E+A RC + + +LPRF + + Sbjct: 226 PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR A AGLE R G A DY++RLD+EL VI M F+ YFLIV D I++++ Sbjct: 282 EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF +RRD Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV +KYG VAQI TFG+L AKAA+RD R+ + + KLIP+ + Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI ++ R + + + E++ +LEGL RH STHAAGIVI D+PL + V + Sbjct: 453 QKAIQENPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D +TQF M +EK GL+K DFLGL+ L+LL + L R + L+ I +D + Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T T G+FQ ES G+R+ L ++P EDI+A+ +LYRPGP++ I + RK+G Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 KE I HP + P+L+ T GVI+YQEQ++Q+A ++G+SL EAD+LRRA+ KK + +++ Sbjct: 632 KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 ++ F+ GA G S++ A +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP F Sbjct: 692 ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846 +++ ++ N +KI ++ +A+ + I+++ PS+N F++ +N I YS I+ V Sbjct: 752 MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKVP 811 Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 T I+ PF DFC R+ K L +LE+LV +G D FG R +L ++D Sbjct: 812 TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965 + +Y + ++ +K N+FA + K K + + + E E+ G Y S Sbjct: 872 AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 HP+ Y+ L+ + I + G N R+A V Sbjct: 930 HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYV 962 >gi|23099632|ref|NP_693098.1| DNA polymerase III alpha subunit [Oceanobacillus iheyensis HTE831] gi|22777862|dbj|BAC14133.1| DNA polymerase III (alpha subunit) [Oceanobacillus iheyensis HTE831] Length = 1106 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 333/1027 (32%), Positives = 525/1027 (51%), Gaps = 48/1027 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF HL + S YSL+E +++ ++DK ++Q A+A+TD L+ A+ F + GI+P Sbjct: 2 SFTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + + + + VLL GYQ LI L + + + Sbjct: 62 IIGLTVMVKDEQLNETVPC-----------VLLAKNNNGYQNLISLSTNININGNE---- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 + S L + + +L P+ ++ ++ LF D Y+ + R Sbjct: 107 EVEKSLLDNYTDDIVGIL------PVTTGMEKVFTEELGTYFSSWSNLFSDDDFYIGVDR 160 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H + L+ +PL + +L E D+ A+D L A+ + + Sbjct: 161 HSL---EVIQSLQSLS----IPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDG---TEI 210 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + + + + R + + R+I + Sbjct: 211 NSKNKQLHFTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNSLTAD 270 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L+ ++ +E RL++EL VI M +S YFLIVADFIQ+AK Sbjct: 271 SYLQQLCISKIEE-------RYKERNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYAK 323 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N I VGPGRGS AGS+ AY L IT++DPL ++LLFERFLNP+R+SMPD D+DF RRD Sbjct: 324 DNQIAVGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRRD 383 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI YV+ KYG + VAQIITFG+ A++ LR++ + L + ++ + K IP ++ Sbjct: 384 EVIDYVREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSLT 443 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + + L I+ KLEG+ R+ STHAAG+VI ++ L+ VP+ Sbjct: 444 DI-LKEKEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPL-TI 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 + +TQ+ M +E GL+K DFLGL+ L+L++K + R + L+ IP D Sbjct: 502 GTNQTYLTQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRSLQLAEIPEQDEA 561 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T+ LL T G+FQLES GM++ L+ + P EDI+A+ +LYRPGP+D I Y RK Sbjct: 562 TFQLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMDFIPTYIRRKKN 621 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E + HP + P+L +T GV+IYQEQ+MQIA +++G++L EAD+LRRA+ KK + +M K Sbjct: 622 VEPVSYPHPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKESDMYK 681 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 QK+ FI G G K +A IF + +FA+YGF +SHA AY+ ISYQ A+MK HYP F Sbjct: 682 QKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAHYPNAF 741 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A ++ + EKI + Q+ ++ N I+PP +N + V I L+AIKG+G Sbjct: 742 YAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERKDIRMGLSAIKGIGI 801 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I++A D F + DFC RV+ K ++R ++E+LV G D +R LL S+D Sbjct: 802 QPIQEILQARKDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLLASIDQ 861 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + + ++ ++F + + + + +E+ +LGFY S HP Sbjct: 862 AIEQKELFKEFLD--QPSLFQDQIEMVE---SYTEIEDFTKIKKLSDEKELLGFYVSSHP 916 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 L Y+ LR G + + + +V + + +T++G R+ ++T S+ E Sbjct: 917 LKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAFLTISDEELE 976 Query: 1027 YEANFFP 1033 +A FP Sbjct: 977 IDAVLFP 983 >gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM 15868] gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM 15868] gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM] gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD] Length = 1550 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 325/1034 (31%), Positives = 525/1034 (50%), Gaps = 82/1034 (7%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--------------- 59 HS +S L+ S+ +++DK ++Q PA+ + D N+ A +F Sbjct: 252 HNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVKKAHQ 311 Query: 60 ------QKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 QKA G + ++GC+ I D + K ++VL Sbjct: 312 EYLANKQKAEEEGADFNENAPESKELMAVLGCEFYIS--DRPEQKQFTKDDPDRRTNVVL 369 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L GY+ L +L S Y+ R+ + + + +I +T G G I A Sbjct: 370 LAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQY-KDDVIAVTSGIYGDIPDAILN 428 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFL 220 Q E+R +K+ FG+ YV LQ H + ++ ++ A + + ++A N + + Sbjct: 429 FGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKILAQNETFYT 488 Query: 221 SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273 + D D++ + +S + + + Y+K+ E+ F P+A E Sbjct: 489 DKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFRQYPDAFEA 548 Query: 274 TVEIARRCSFILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQ 325 E+ + +LP+F E D ++ E LR+ G + Sbjct: 549 YTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYEGAKK---- 604 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 D R+RLDFEL +IA + GYFLIV DF A+K + VGPGRGS AGS Sbjct: 605 ---RYDEITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSA 661 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF + RD +I++V +KYG VAQ Sbjct: 662 VAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSNVAQ 721 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-----SLQAIADDSRF-- 498 IIT+ L K+A++D GR L +P + + + KL+P+ P + + D+ + Sbjct: 722 IITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIAKALSKYDKLKDEDKVLV 781 Query: 499 ----REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DL 553 + +L+ ++K+EG R+ HA G++I +S LVP+ + D+ Sbjct: 782 DEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAKDADI 841 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612 V+QF+ E AGL+K DFLGL+TLT+++ +L + +R + ++ I DD +TY L Sbjct: 842 LVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKTYQLF 901 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRK+G E+I+ Sbjct: 902 KEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGVEEII 961 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 P + LKET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + ++K +F Sbjct: 962 YDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPKF 1021 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 I G KN + + I+ FA+Y FNKSH+ YA+I+YQTA++K +YP E++A+ M Sbjct: 1022 IEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYMASVM 1081 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851 + ++N +I F +D R + ++ P VN F V D +I + L AIKG+G + Sbjct: 1082 SNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGEGPSE 1141 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ------- 903 I + A F ++ DF RV ++N+RV+ESLV AGA D Y R Q Sbjct: 1142 AISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDNSGKT 1201 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 +++ + +Y Q ++++ ++FA + ++ + + + E+ ++GFY Sbjct: 1202 NIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEIIGFY 1261 Query: 963 FSGHPLDVYKPILR 976 S HPLD YK R Sbjct: 1262 LSAHPLDEYKYQFR 1275 Score = 40.9 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Query: 993 NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027 +A ++ + + G +I ++T + + Y Sbjct: 1385 KEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSY 1420 >gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910] Length = 1555 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 327/1035 (31%), Positives = 519/1035 (50%), Gaps = 80/1035 (7%) Query: 16 VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------ACAAG- 66 HS +S L S+N+++ K + + PA+ + D N+ A +F A Sbjct: 253 NHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADRAKKHKE 312 Query: 67 ------------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102 + P++GC+ I D + K +VLL Sbjct: 313 YLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYIS--DRYEQKQFTKDDPDRRTQVVLL 370 Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162 GY+ L +L S +L R+ + + EG+I LT G G I A Sbjct: 371 AKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQY-KEGVIALTSGIMGDIPDAILNT 429 Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLS 221 Q E+ +K F D YV +Q H+ + ++ ++ LA + + ++A N + + + Sbjct: 430 GEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETFYTN 489 Query: 222 EEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274 ++D D++ + ++ R T ++Y+K+ E+ F P+A + Sbjct: 490 KDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAFDAY 549 Query: 275 VEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQG 326 E + +LP+F E D ++ E L + G + R + Sbjct: 550 EEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRYGEE 609 Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386 I + ++RLDFEL VIA + GYFLIV DF A+K + VGPGRGS AGS Sbjct: 610 GI-----TDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSAV 664 Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446 AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF + RD VI++V KYG +VAQI Sbjct: 665 AYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQSQVAQI 724 Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREARL 503 IT+ L K+A++D GR L +P + + KLIP+ P ++ D + Sbjct: 725 ITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPEEQMLVD 784 Query: 504 ADPS--------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DLP 554 +L ++K+EG R+ HA G++I +S LVP+ + D+ Sbjct: 785 EMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKDADIL 844 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLT 613 V+QF+ E AGL+K DFLGL+TLT+++ +L + R V +D LIP DD +TY L Sbjct: 845 VSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDDAKTYQLFK 904 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRK+G E+IV Sbjct: 905 EGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIEEIVY 964 Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733 P + LKET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + ++K +FI Sbjct: 965 DLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPKFI 1024 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 G KN +++ I+ FA+Y FNKSH+ YA I+YQTA++K +YP E++A+ M+ Sbjct: 1025 EGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPAEYMASVMS 1084 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARH 852 ++N + I F +D + + ++ P VN F V + +I + L AIKG+G + Sbjct: 1085 NNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEGPSEA 1144 Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQ-------S 904 I + F ++ DF R+ ++N+RV ESLV AGA D R Q + Sbjct: 1145 ITRERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFDIDMAGKTN 1204 Query: 905 LDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L+ + +Y Q ++++ ++FA + ++ L + + E+ ++GFY Sbjct: 1205 LERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPEWPNMHKLNKEKEIIGFYL 1264 Query: 964 SGHPLDVYKPILRKM 978 S HPLD +K + M Sbjct: 1265 SAHPLDEFKYQFQFM 1279 Score = 44.4 bits (103), Expect = 0.098, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 992 GNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEY 1027 G +A ++ + + R G ++ +VT + + Y Sbjct: 1389 GKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSY 1425 >gi|169630782|ref|YP_001704431.1| error-prone DNA polymerase [Mycobacterium abscessus ATCC 19977] gi|169242749|emb|CAM63777.1| Error-prone DNA polymerase [Mycobacterium abscessus] Length = 1078 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 278/1037 (26%), Positives = 463/1037 (44%), Gaps = 69/1037 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++ + A A+AITD + + + F++ A G+ + Sbjct: 42 YAELHAHSAFSFLDGASLPEEMVQEAARLDLKALAITDHDGFYGVVRFAEAAKELGLPTV 101 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GK 126 G +L + G+ +++L EGY+RL ++ +L K Sbjct: 102 FGAELSL----------GGQGNTEDSVHLLVLARGQEGYRRLSRQMAGAHLSGGTPKDRK 151 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185 R L L E +LTG G + RA AE+ L FG DR+ + Sbjct: 152 GKPRYDLDALTEAAGGHWHILTGCRKGHVRRALAGGGPVAAERALANLVDRFGADRVSIE 211 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L RH + R +++ LA + ++AT + F + E + AV + Sbjct: 212 LNRHGHPGEDERNAELAALARGFGVGVIATTAAHFATPESGRLAMAMAAVRARKSLDDAA 271 Query: 245 RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ EM +FS PE + E+ C+F L++ AP LP F Sbjct: 272 GWLDPVGGAHLRSGDEMARLFSHYPEVVTAAAELGEECAFDLRLIAPQLPPFDVPSG--- 328 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ A+ G R AQ +++ EL +IA++ F GYFL+V D Sbjct: 329 -HTEDSWLRHLALEGAARRYG-----PRAGAQKAYAQIERELEIIAQLNFPGYFLVVHDI 382 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 Q+ ++++I GRGS A S YAL +T++DP+ LLFERFL+P R PD DID Sbjct: 383 TQFCRRSDIL-CQGRGSAANSAVCYALGVTNVDPVDNGLLFERFLSPARDGPPDIDIDIE 441 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D R++ I+YV NKYG E AQ+ + + + A+RD+ +AL Q D K + + Sbjct: 442 SDEREQAIQYVYNKYGREYAAQVANVITYRGRMAVRDMAKALGFAQGQQDAWSKQMGHWG 501 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 +A D ++++++++++ RH H+ G+VI DRPL+ +V Sbjct: 502 G-------------LADAAAVDGIPPQVIQLARQIKDFPRHMGIHSGGMVICDRPLADVV 548 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ + V Q++ GL+KFD LGL L+ L +D + + + VDL+ I Sbjct: 549 PVEWARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYCIDLVREHKGIDVDLAHIN 608 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 + Y +L ++G+FQ+ES L ++P C D++ V+L RPGPI V+ Sbjct: 609 LKEQAVYEMLARADSVGVFQVESRAQMATLPRLKPKCFYDLVVEVALIRPGPIQGGSVHP 668 Query: 663 ---NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 + HP + L +T GV ++QEQ+MQ+A ++G+S +E+D LRRAM Sbjct: 669 YIRRYNKIDKDWQHDHPSMAAALDKTLGVPLFQEQLMQLAVDVAGFSPAESDQLRRAMGS 728 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+ E M++ + RF G +GI+ +A I+E L FA++GF +SHA ++A + + ++ Sbjct: 729 KRSPERMERLRNRFYEGMRNLHGITGELADRIYEKLYAFANFGFPESHAQSFASLVFYSS 788 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835 W K H+P F AA + + + DAR+ + + P VN + + + Sbjct: 789 WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLSYATLENAGLEV 848 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L A++ +G A+ I+E PF SL D R+ +L +E+L GAL CF Sbjct: 849 RIGLGAVRHIGDDLAQAIVEERKVRGPFVSLLDLTGRI---QLTTAQVEALATGGALGCF 905 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 SR + L + R Sbjct: 906 DMSRREALWV------------AGAAAAQRP---DRLPGVGVSSRIPALPEMGEVTRAAA 950 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + G +P + L MG+ + G+ + +A V +Q+ T G Sbjct: 951 DVWATGVSPDSYPTQFLRARLDAMGVVPAKGLFGVPDGSRVLVAGAVTHRQRPATAAG-- 1008 Query: 1015 IGWVTFSEPAKEYEANF 1031 + ++ + Sbjct: 1009 VTFINLEDETGMVNVVC 1025 >gi|302187800|ref|ZP_07264473.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae 642] Length = 1031 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 272/1044 (26%), Positives = 456/1044 (43%), Gaps = 84/1044 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + + ++ A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSASELFERALRHGYKALAITDECTLAGIVRAWQASTS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ I+G ++ I+ P +VLLV GY+ L L++ + Sbjct: 59 TGLPLIVGSEMHIENG----------------PKVVLLVENQTGYEALCRLITVARRRAK 102 Query: 125 GKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 K R+ E +GL+ L G + F +RL+ Sbjct: 103 -KGEYRLLREDF-EPAPDGLLALWLPDLDGDAQACLADGR---------WLCERFAERLW 151 Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-S 241 + + HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 152 LGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAE 211 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + +L+ + + D A +V IARRC+F L P + + Sbjct: 212 AGHLLFANGERHLRPLDVLSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG- 268 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + LR G+ R G R +++ EL +IA KF YFL V Sbjct: 269 ---QTPTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVH 319 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+D Sbjct: 320 DIVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVD 378 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L + Sbjct: 379 FEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSR 438 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 S + + + P + R+L ++ +L G RH S H G VI + PL Sbjct: 439 WSDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDT 494 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 LVP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ Sbjct: 495 LVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLAT 554 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V Sbjct: 555 LPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMV 614 Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R+NG+E + P ++ + K T GV ++QEQVM++A L + Y+ EAD LRRAM Sbjct: 615 HPYLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMA 673 Query: 719 KKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + + +ER G KNG A IFE + F YGF +SHAA++A+++Y + Sbjct: 674 AWKRHGGLEPHRERLRKGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASC 733 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------ 831 W+K H P F A + + QDAR+ +I+I P V D + Sbjct: 734 WLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHSD 793 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888 + I L ++G A I A A +PF D R + L+ R E+L + Sbjct: 794 STRNLAIRLGLRMVRGFREEDALRIEAARAKRPFVDATDLTLRAE---LDSRAAEALADS 850 Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948 GAL R + + + +F + I + Sbjct: 851 GALRGLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQVI----LPLPTV 894 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + + LG HPL + + L + ++ + + +A +V+ +Q+ Sbjct: 895 AEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPG 954 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T G + +VT + + Sbjct: 955 TASG--VTFVTLEDEFGMVNVVVW 976 >gi|294010399|ref|YP_003543859.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] gi|292673729|dbj|BAI95247.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S] Length = 1090 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 286/1046 (27%), Positives = 460/1046 (43%), Gaps = 78/1046 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P + LQV S +S L GA S + + A A+A+ D N+L + Q A Sbjct: 1 MT-APRYAELQVTSHFSFLRGASSCEELFSQAALAGIEALAVVDRNSLAGIVRAHQAAKT 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G++ I+GC+LD+ S+++ + Y RL L+S Sbjct: 60 TGVRLIVGCRLDLVDG----------------ASMLVYPTDRSAYSRLCRLLSLGKQR-A 102 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 GK + L G EGLI++ + A RL + FGDR Y+ Sbjct: 103 GKAKCHLEWPDLMAYG-EGLIVVLVPDQADAECAL----------RLRRLRDAFGDRAYL 151 Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242 L R R D+ R ++ LA +P V TN+ LF DV+ + H+ T+ + Sbjct: 152 ALTLRRRPNDQLRIHELSNLATQMRVPTVVTNDVLFHEPARRVLQDVVTCIRHNVTIDAL 211 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 DR D Y+K EM +F+ PEAL T++IA RC F L A P DD Sbjct: 212 GDRRERHADRYIKPPEEMHRLFARYPEALARTLQIADRCRFNLDELAYQYPEER----DD 267 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L G R +G L EL +I ++ ++ YFL V Sbjct: 268 PALTPQETLAKLTWEGAAQRYPEGV------PDSVIAALRHELRLIEKLGYAPYFLTVNA 321 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S Y L IT IDP R LLFERF++ +R PD D+DF Sbjct: 322 IVRFARSKDIL-CQGRGSAANSAVCYVLGITSIDPGRNDLLFERFVSEERREPPDIDVDF 380 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+ V+++V + YG + A T + K ALRDVG+AL +P + L + Sbjct: 381 EHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLIGTLSSQVWAW 440 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 V + + LAD + L+++++L G RH S H G V+ L L Sbjct: 441 SEEGVEQRHV----EALNLNLADRRLRLTLDLARQLMGAPRHLSQHPGGFVLTHDRLDDL 496 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 VP+ D V +++ I+ +K D L L LT ++K LD LA+ DL+ I Sbjct: 497 VPIEPAAMKDRQVIEWDKDDIDALKFMKVDVLALGMLTCMKKGLDLLAEHKGVNLDLASI 556 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 557 PAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDMVH 616 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+ G E + P ++ +L +T GV ++QEQ M++A +G++ EAD+LR++M Sbjct: 617 PYLRRREGLEPVHYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSMAT 676 Query: 720 KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + +++ I+G NG + A F+ L F YGF +SHAA++A+I+Y +AW Sbjct: 677 FKFTGGVSHFRDKLIAGMVANGYEQAFAEQTFKQLEGFGSYGFPESHAASFALIAYASAW 736 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833 +K +P F AA + + + +DA + + + P N D + Sbjct: 737 LKCWHPDVFCAALLNSQPMGFYAPAQIVRDAIEHGVDVRPVCANASRWDCTLEPTSDESR 796 Query: 834 -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + L +KG+ T I+ A AD+P+ S++D R + L L A A Sbjct: 797 YAVRLGLRMVKGLANTHGAAIVSARADQPYTSIDDLWRRAGAPS---AALVQLAEADAFR 853 Query: 893 -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVE 946 G +R + L ++ ++ +FA Sbjct: 854 PALGLARREALWAIKALRDE-----------PLPLFAAASAREAGAIPEIDEPAVALRPM 902 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + +G HPL + L++ I E++A G + A +V+ +Q+ Sbjct: 903 TAGGEVVEDYGHVGLTLRTHPLSFLREDLQRRRIVTCAEAMAARDGRWVEAAGIVLVRQR 962 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + KG + ++T + + Sbjct: 963 PGSAKG--VMFITLEDETGIANLVVW 986 >gi|154252973|ref|YP_001413797.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154156923|gb|ABS64140.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 1085 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 272/1037 (26%), Positives = 454/1037 (43%), Gaps = 60/1037 (5%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 S SF L V +++S L GA ++ A AI I D N L + A I Sbjct: 2 SASFAELAVATNFSFLRGASHAEELVLAAKAQGLSAIGIADRNTLAGIVRAHAAAKEEKI 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 + ++G +L + ++ Y RL L++ K Sbjct: 62 RLLVGARLVLQDG----------------FEVIAYPQDRAAYGRLTRLLTLGNRR-APKG 104 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + +S L E G + P+ + E +L + F D +++ L Sbjct: 105 ECFLAMSDLLEHGEGHCFIAMPP---PVP-------DEDFEAKLRLIAETFPDSIWLGLT 154 Query: 188 RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245 D R V++ LA ++PLVATN+ L+ S + HDV+ V T+ R Sbjct: 155 PFYRADDVRRHHVLELLARKTQVPLVATNDVLYHSPDRKPLHDVVTCVREHCTLKEAGFR 214 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + ++K+ EM + + +P+AL T +I RCSF L+ + + Sbjct: 215 LAANAERHVKSPEEMSRLLAHVPKALSATFDIVERCSFSLEELRY----EYPADNFSEHE 270 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L G +QG R+ +D EL +I M ++ YFL V D ++ Sbjct: 271 TPQELLVRLTWEGARDFFSQGVD------DKIRKAIDHELKLIEEMAYAPYFLTVHDIVR 324 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ NI GRGS A S + L IT ++P LLFERF++ DR PD D+DF + Sbjct: 325 YARSQNIL-CQGRGSAANSTVCFCLGITSVNPSEIDLLFERFISKDRNEPPDIDVDFEHE 383 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG R T S ++++A+RDVG+ + + L + + Sbjct: 384 RREEVIQYIYEKYGRHRAGIAATVISYRSRSAIRDVGKVFGLSEDVISALSRSTWGWSSS 443 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 VS D+R +D + L+++ +L G RH S H G VI PL ++VP+ Sbjct: 444 GVSQ----KDAREIGLDPSDRRLRLALKLAGELIGFPRHLSQHVGGFVITKGPLDEVVPI 499 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604 D +++ ++ G++K D L L LT ++K+ +F+ + + L+ +P Sbjct: 500 QNAAMDDRTFVEWDKDDLDTLGILKIDVLALGMLTCIRKAFEFIEKHYARPMTLAGVPQG 559 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D Y +L +G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 560 DKAVYDMLCEADAIGVFQVESRAQMSMLPRLKPRNFYDLVVEVAIVRPGPIQGDMVHPYL 619 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R++GKE+I +++ +L+ T GV ++QEQ M+IA + +G++ E+D LRRAM K Sbjct: 620 RRRSGKEEITYPSSVLEEVLERTYGVPLFQEQAMKIAIVAAGFTPGESDQLRRAMATFRK 679 Query: 723 E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + +++FI+G KNG + A F+ + FADYGF +SHAA++A ++Y +AW+K Sbjct: 680 SGTIGMYRDKFIAGMLKNGYKQDFAERCFKQIEGFADYGFPESHAASFARLAYISAWLKY 739 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836 HYP F AA + + + +DA + +++ P VN D + + Sbjct: 740 HYPDAFCAALLNSQPMGFYAPAQLVRDASEHGVEVRPVDVNHSDWDCTLEKTTGGKCAVR 799 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L +KGV T I FDS+ + L RV+E L A A G+ Sbjct: 800 LGLRQVKGVQIATGETIEGKRGKG-FDSIRHLWLKT---GLGPRVIEKLADADAFRSIGF 855 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R + L ++ + Y + T +FA + + Sbjct: 856 DRREALWAVRGLGGYG-NGQNGTTPAALPLFATLEEGGLQVEEDVSLPAMPPGEHVVLDY 914 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +L HP+ +P G + T G I +A +V+ +Q+ T G + Sbjct: 915 AMLRLSLKAHPISFLRPRFAACGAISSRQLKETEAGKRISIAGLVLVRQRPGTASG--VI 972 Query: 1017 WVTFSEPAKEYEANFFP 1033 + T + +P Sbjct: 973 FATLEDETGIANIIIWP 989 >gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rhodococcus opacus B4] gi|226244185|dbj|BAH54533.1| error-prone DNA polymerase [Rhodococcus opacus B4] Length = 1084 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 279/1032 (27%), Positives = 469/1032 (45%), Gaps = 72/1032 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + + + F++ A ++ + Sbjct: 61 YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTV 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D +++L EGY+RL ++ +L K +R Sbjct: 121 FGSELSLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGRLR 163 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L L + +LTG G + +A A RL FG DR+ V L H Sbjct: 164 YDLDRLADAAGGHWQILTGCRKGHVRQALADGGPDAAAARLRDLIDRFGADRVTVELTHH 223 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D R + + +LA H L ++A+ + F + AV + Sbjct: 224 GVAEDAERNACLAELAQRHGLRVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAAGYLA 283 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +L++ EM +F+ P+A+ E+ C+F L++ AP LP F + E Sbjct: 284 PAGGAHLRSGEEMAHLFAAYPDAVRGAAELGLECAFDLRLIAPQLPPFDVPDG----HTE 339 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R A + YRQ ++ EL +I + F GYFL+V D + + Sbjct: 340 ASWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELGIITGLNFPGYFLVVHDIVSFC 394 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K N+I GRGS A S YA+ IT++DP+R LLFERFL+P+R PD D+D DRR Sbjct: 395 KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 453 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V KYG + AQ+ + + K+++RD+ RAL Q D K + Sbjct: 454 EEAIQHVYTKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWGGIGK 513 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 514 E--------------AGTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 559 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 ++ V Q++ GL+KFD LGL L+ L +D +A+ ++VDL+ + + Sbjct: 560 ARMANRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEE 619 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 620 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 679 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +N E + HP ++ LK T GV ++QEQ+MQ+A ++G+S +EAD LRRAM K+ E Sbjct: 680 RNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSKRSPE 739 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ + RF G + +GI +A I+E L FA++GF +SH+ ++A + + ++W K H Sbjct: 740 KMERLRGRFYQGMRELHGIGGDVADRIYEKLFAFANFGFPESHSQSFAALVFYSSWFKLH 799 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840 +P F A + + + DAR+ +++ VN V + L Sbjct: 800 HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATVEAGGTEVRLGLG 859 Query: 841 AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++ +GT A I+++ D P+ S D RV+ L+ ESL AGALD FG SR Sbjct: 860 EVRHIGTALAERIVDSRGDGGPYTSFLDLTGRVE---LSTAQAESLATAGALDSFGLSRR 916 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + A ++R + + Sbjct: 917 EALWA----AGAAAGERRDRLPG-----------IGASTRAPTLPGMSDLELAAADVWAT 961 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +P + +P L +G+ + G+ + + V +Q+ T G + ++ Sbjct: 962 GVSPDTYPTEFLRPQLDALGVIPAAHLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1019 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1020 LEDETGMVNVVC 1031 >gi|152986891|ref|YP_001350182.1| error-prone DNA polymerase [Pseudomonas aeruginosa PA7] gi|167016910|sp|A6VAU7|DNAE2_PSEA7 RecName: Full=Error-prone DNA polymerase gi|150962049|gb|ABR84074.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa PA7] Length = 1024 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 279/1035 (26%), Positives = 451/1035 (43%), Gaps = 78/1035 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S GA S + + A A+AITD +L + Q A ++ Sbjct: 2 SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREYRVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++G ++ ++ P +VLL GYQ+L L++R K S Sbjct: 62 LLVGSEIRLE----------------QGPKLVLLAEDLAGYQQLCRLITRGRRRAD-KGS 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ L + +G++ + A + F RL++ ++ Sbjct: 105 YRLLREDL-QPALDGVLAIW---------LAEPGDDDDA----AWLGECFPQRLWLGVEL 150 Query: 189 HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HRG D R ++ LA +LP VA + D + A+ + VS+ Sbjct: 151 HRGADDDARLRGLLALAARAQLPAVACGDVHMHCRGRRALQDCMTAIRNHLPVSEAGAHL 210 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + R L T+ IA RC F L+ PR + D Sbjct: 211 F-ANGERHLRPLAALQGIYPEALLAETLRIAERCRFDLEQLKYQYPRELVPAGHD----P 265 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR G+ R GA A R++++ EL +I+ + + YFL V D + +A Sbjct: 266 ASWLRRLTEKGIRRRWPDGASA------KVREQIEKELKLISELGYESYFLTVQDIVGFA 319 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GRGS A S +AL IT++DP R +LLFERFL+ +R PD D+DF +RR Sbjct: 320 RRQKIL-CQGRGSAANSAVCFALGITELDPERINLLFERFLSRERNEPPDIDVDFEHERR 378 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV N+YG +R A + A+RDV +AL +P QVD L Sbjct: 379 EEVIQYVFNRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPDQVDALANCCGRWSDRAP 438 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + + + R+L ++ +L G RH S H G VI ++PL LVP+ Sbjct: 439 SAERLME----AGFDPQSAVLRRVLALTGELVGFPRHLSQHPGGFVISEQPLDTLVPVEN 494 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605 + V Q++ ++ GL+K D L L L+ L++S D L + LSL D Sbjct: 495 ASMVERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLLHELRGGERLSLASIPSED 554 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 555 PATYAMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIQVAIVRPGPIQGDMVHPYLR 614 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+NG+E + ++ + + T GV ++QEQVM++A + + YS EAD LRR+M + Sbjct: 615 RRNGEEPVAYPSVELEKVFERTLGVPLFQEQVMELAIVAADYSPGEADELRRSMAAWKRH 674 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + +ER G NG A IFE + F YGF +SHAA++A+++Y ++W+K H Sbjct: 675 GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837 P F A + + QDAR+ IQ P V D + I Sbjct: 735 EPAAFACALINSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRWDCSLEPIGQEQPAIRL 794 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L I+G AR I +A + F + D R L+ R LE L AGAL Sbjct: 795 GLRMIRGFREEDARRIEQARQAQSFTDVHDLGRRA---GLDTRALELLADAGALRGLAGH 851 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + ++ + +FA I+L + + ++ Sbjct: 852 RHKARWAIAGV------------EPQLPLFAEGPRIEEPAISLP---LPSRGEELLSDYA 896 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +LG HPL + + L+ + E V G +R+A +VV +Q+ +T G + + Sbjct: 897 LLGTTLGPHPLKLLRVQLKARRCRASRELVGMEHGRPVRIAGLVVGRQRPQTASG--VTF 954 Query: 1018 VTFSEPAKEYEANFF 1032 +T + + Sbjct: 955 ITLEDEFGMVNVVVW 969 >gi|254556764|ref|YP_003063181.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum JDM1] gi|254045691|gb|ACT62484.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum JDM1] Length = 1116 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 324/1026 (31%), Positives = 520/1026 (50%), Gaps = 39/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ +A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + Sbjct: 169 QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + + V L V + QV + + + Sbjct: 227 EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A + Sbjct: 286 YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR++ Sbjct: 344 AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN + Sbjct: 404 VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 R + L E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 464 A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608 + +TQ+ +E GL+K DFLGL+ L+L+ +L + Q G + ++ I +D T Sbjct: 522 SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK G+ Sbjct: 582 LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +DK Sbjct: 642 EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY F Sbjct: 702 RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 762 TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +++ A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 822 FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + A ++F ++K + R E LG Y SGHP Sbjct: 882 LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ Y L + ++ + + +T++G + + T S+ + E Sbjct: 931 VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987 Query: 1028 EANFFP 1033 + FP Sbjct: 988 DLTIFP 993 >gi|310830390|ref|YP_003965491.1| hypothetical protein PPSC2_p0029 [Paenibacillus polymyxa SC2] gi|309249857|gb|ADO59423.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 1305 Score = 605 bits (1560), Expect = e-170, Method: Composition-based stats. Identities = 354/1064 (33%), Positives = 555/1064 (52%), Gaps = 70/1064 (6%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 L HS YSLL+G +++I+ K AITD +F LE+ ++ AG PI+G Sbjct: 151 LHRHSGYSLLDGGSKISDIVRKTEYAG----AITDHGAMFGTLEYYKQMRKAGKLPILGF 206 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133 + + ++LL EG++ L++L S+ + + + Sbjct: 207 EAY----------AETIQGEKKGNHLLLLAKNEEGFKNLVKLTSKS--QENFFRKPHVNY 254 Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192 L G +G+I T + + N + A+ ++FG + YV LQRH Sbjct: 255 DMLGTYG-KGIISSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQRHGFD 313 Query: 193 DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-P 250 + Q++Q+A +L ++ T +S + +ED H+VL+ + +S DR + Sbjct: 314 EERIVNPQLIQIARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQFPGT 373 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQKEEEN 309 ++L E+ +FSD+PEALENT+EIA +CS L+++ +P+F E + Sbjct: 374 GYHLHTSDEVEELFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKFNVPAPFV---NEMD 430 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L++ A G + R ++YR+RL FEL VI M F GYFLIV DF+ +AK+ Sbjct: 431 YLKHLAWQGFKERFEG----TEKDNEEYRERLTFELEVIKGMGFPGYFLIVGDFVDFAKR 486 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I VGPGRGS G++TAY L ITD+DP+ LLFERFLNPDR+SMPD D+DF DRR+E Sbjct: 487 KGILVGPGRGSVVGALTAYCLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDFPDDRREE 546 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI YV+NKYG V++IITFG++ A+AA++DVGR L P S ++ K IP P + Sbjct: 547 VIDYVKNKYGEHAVSRIITFGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAVPKMTIKK 606 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM---- 545 + F + + V ++++I+ KLEGL RHAS HA G+VI +S +P Sbjct: 607 A-FKESPEFLKMYETEADVKKIVDIAMKLEGLPRHASMHACGVVIAPSSISDYIPEILME 665 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600 ++ + TQFNM E+ G++K DFLGL+T+T++ KSL + R ++ Sbjct: 666 NKETKLKERTTQFNMAECEEMGILKMDFLGLRTMTVISKSLSNVNPRRIREGKKPLHYLD 725 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC----------IEDIIALVSLY 650 IP +D Y + + G+FQLES GMR ++ + D E +IA VSLY Sbjct: 726 IPLNDKRVYQDIAKGESYGVFQLESGGMRSFMKELFADALQTGENTMELFERLIAGVSLY 785 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP+D I Y E I HP + +L+ T GVI+YQEQ M I + L+ ++ EA Sbjct: 786 RPGPLDYIPDYLKNMQNPENIQYDHPKLKSILEFTYGVIVYQEQCMFIVRELADFTKGEA 845 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D +R+A KK ++ + E+F++G K GIS+ +A I+ + KF +Y FNKSHA AY+ Sbjct: 846 DNVRKAFSKKKEKMIKPLGEKFVAGCLKKGISQEVAERIWGKMRKFGEYAFNKSHAGAYS 905 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 V+S TAW+K +YPVEF+ A + ++ +K+K F ++ I+I+PP V+ F V Sbjct: 906 VLSVVTAWLKFYYPVEFMTAVLNSYINKADKLKLFLSVVKKMKIEILPPDVDRSGQMFTV 965 Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAG 889 +RI + L IKG+G + I E +A+ F+ +D R K+++++LE++V++G Sbjct: 966 DGDRIRFGLQGIKGLGKASENVIEERAANGEFEDFQDLAERMAKHSKVDKKILEAMVYSG 1025 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948 ++D F +R L+ LD I A +K + ++F+ E+ KI + + Sbjct: 1026 SVDSFPGTRSAKLEVLDKILASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIPDKKEFHK 1085 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRK-----MGIKGYEESVA--------------T 989 + E E+ GFY S HPLD Y + +G +EE Sbjct: 1086 KFKLEKEKEYAGFYISEHPLDEYASYFAREGVYEIGFIKHEEDEDETIEVEGEVFGGDTN 1145 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032 G +++A ++ + T++ + + T + E + F Sbjct: 1146 YDGEVVKVAGIITDLKTFYTKRDQKELKVFTLEDRTGEMKVVCF 1189 >gi|28378550|ref|NP_785442.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum WCFS1] gi|28271386|emb|CAD64291.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum WCFS1] Length = 1116 Score = 605 bits (1560), Expect = e-170, Method: Composition-based stats. Identities = 324/1026 (31%), Positives = 520/1026 (50%), Gaps = 39/1026 (3%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++SLL +++ ++ +A+TD + ++ ++F A I PI Sbjct: 4 YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L++ G+ S+V+L GYQ L+ L + S+ Sbjct: 64 LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189 L +L L++LT + N+++ A + T ++ LY+ + Sbjct: 114 AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + + A H+LP+VA + ++ +DY A VL A+ + Q + + Sbjct: 169 QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + + V L V + QV + + + Sbjct: 227 EGSHCLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR AGL RLA AI Q Y+ RLD EL VI +M F YFLIV D + +A + Sbjct: 286 YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN R +MPD D+D +RR++ Sbjct: 344 AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR + ++ IPN + Sbjct: 404 VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 R + L E +++LEGL RH STHAAG+V+ +PL Q+VP+ Sbjct: 464 A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608 + +TQ+ +E GL+K DFLGL+ L+L+ +L + Q G + ++ I +D T Sbjct: 522 SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 L T G+FQ ES+G+R L + PD E + A+ +LYRPGP++NI + RK G+ Sbjct: 582 LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKKGQ 641 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + + P+L T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK + +DK Sbjct: 642 EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 +++FI+GA +NG S+ +A +++ + +FA+YGFN+SHA AY+ ++++ A++K HY F Sbjct: 702 RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 + M + N K+K++ +ARQ + I+PP +N F I + L++IKG+ Sbjct: 762 TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821 Query: 849 TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 +++ A+ PF SL+ F R+D+K L ++++L++AGA D FG +R +LL S+ Sbjct: 822 FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 + A ++F ++K + R E LG Y SGHP Sbjct: 882 LMSSA-----ELAGGSMSLFESL------APKIKKQPEISLGERLAKEAEYLGVYVSGHP 930 Query: 968 LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027 ++ Y L + ++ + + +T++G + + T S+ + E Sbjct: 931 VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987 Query: 1028 EANFFP 1033 + FP Sbjct: 988 DLTIFP 993 >gi|117928203|ref|YP_872754.1| error-prone DNA polymerase [Acidothermus cellulolyticus 11B] gi|117648666|gb|ABK52768.1| error-prone DNA polymerase, DnaE-like protein [Acidothermus cellulolyticus 11B] Length = 1090 Score = 605 bits (1560), Expect = e-170, Method: Composition-based stats. Identities = 279/1035 (26%), Positives = 476/1035 (45%), Gaps = 61/1035 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + L HS++S L+GA ++++ A +A+TD + + + F++ A G++ Sbjct: 55 RYAELHCHSNFSFLDGASHPEELVEEAARLGLETLALTDHDGFYGVVRFAEAAAELGVRT 114 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 + G +L + + + + P +++L EGY+RL +S +L GK Sbjct: 115 VFGAELSLSL-----VEPRAGAVDPDAVHLLVLARDPEGYRRLAVAMSAAHLRGGGKGRP 169 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 + + L ++LTG G + RA A + + ++FG + + V L Sbjct: 170 QYDETELAHTAGGHWLILTGCRKGRVRRALAAEGPDGAVREIDRLVEMFGRENVAVELTD 229 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE-DYEAHDVLMAVAHSTVVSQKDRP 246 D + A LP+VAT N+ + + + A + A ++ Sbjct: 230 DGQPLDSAANDVLAAAAVRCGLPVVATTNAHYATPDRGRLAAALAAVRARKSLDEIAGWL 289 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 P +L++ EM F+ P A+ N + C+F +++ AP LP F Sbjct: 290 PAAPVRHLRSGVEMAQRFARYPGAVANAARLGAACAFDVRLIAPRLPDFPVPPG----HT 345 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR A+ G + + D ++LD+EL+VI ++ F GYFL+V + +++ Sbjct: 346 EMSYLRELAMRGAAEKYGPP-----HQRPDVYRQLDYELDVIEQLGFPGYFLVVWEIVEF 400 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + I GRGS A SV Y L IT DP+ F LLFERFL+P+R PD D+D R Sbjct: 401 CRSRGIL-CQGRGSAANSVVCYVLGITKADPIAFRLLFERFLSPERDGPPDIDVDIESGR 459 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV ++YG ER AQ+ T + + ++A+RD+ RAL Q D K + P Sbjct: 460 REEVIQYVYSRYGRERAAQVATVITYRPRSAVRDMARALGYSPGQQDAWSKQLDRYGEIP 519 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 R + D ++ +++++ G RH H+ G+VI DRP++++ P+ Sbjct: 520 ------------RGSEADHDVPDDVVHLARQVLGFPRHLGIHSGGMVICDRPVAEVCPVE 567 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605 V Q++ + G++KFD LGL L+ L++ D + GV++ L IP +D Sbjct: 568 WARMPGRSVLQWDKDDCARIGVVKFDLLGLGMLSALRECFDLIETYHGVRLSLETIPPED 627 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 Y +L ++G+FQ+ES L +QP D++ V++ RPGPI ++ + Sbjct: 628 PAVYDMLCAADSVGVFQVESRAQMATLPRLQPRNFYDLVTEVAIIRPGPIQGGSVHPFIR 687 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ G+E + HPL+ L+ T GV ++QEQ+MQ+A ++G + +EAD LR+AM K+ Sbjct: 688 RRRGREPVRYAHPLLRHSLERTYGVPLFQEQIMQMAIDVAGLTPAEADHLRQAMGAKRSV 747 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E M++ K + +G ++NGI+ +A I+E L FA +GF +SHA ++A + Y +AW+K + Sbjct: 748 ERMERLKAKLYAGMARNGITGAVADEIYEKLQAFAHFGFPESHAISFAFLVYASAWLKKY 807 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYS 838 YP F AA + + DAR+ + I P V + + + Sbjct: 808 YPAAFCAALLNAAPLGFYSPQTVVADARRHGVVIRRPCVASSATKTILEPMDGGWAVRLG 867 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L+ +KGV TA I+ P+ + D R + L+ LE+L AGA +CFG R Sbjct: 868 LSLVKGVSAETADRIVARR---PYRDMADLARRCE---LSVTHLEALAAAGACECFGLDR 921 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q L + F E T + + R Sbjct: 922 RQALWLAGSA--------AETRPGQLEGFGVEA-------TPPRLPPMTEMETTVTDLRF 966 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG +P + L +MG+ + + + + +V Q+ T +G+ ++ Sbjct: 967 LGISPDVYPTAHVRDQLTEMGVVPAAQLHRVAPDSRVLVGGVVTHWQRPATARGT--TFL 1024 Query: 1019 TFSEPAKEYEANFFP 1033 + P Sbjct: 1025 NVEDETGMVNVICSP 1039 >gi|163791498|ref|ZP_02185904.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp. AT7] gi|159873221|gb|EDP67319.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp. AT7] Length = 1112 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 339/1028 (32%), Positives = 543/1028 (52%), Gaps = 46/1028 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV LQV SSYSLL+ +++ ++ K AIA+TD N L+ ++F + I+P Sbjct: 2 SFVQLQVISSYSLLQSTVTIEALVLKAKERGYKAIALTDYNILYGIVDFYKMCKKHHIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G LD+ G SI+LL A GY+ L+ L S LL + + Sbjct: 62 LLGLTLDV----------GGIIKTDENHSILLLAKNAAGYESLLTLSSEKMLLAETE--- 108 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ + ++E + LI +T G G ++ N + A + ++ LF +R Y+ +Q Sbjct: 109 RLTIDQIKE-HSRNLIAVTPGEKGEVEHFLLQNEKKAAAAVVEKWQALFPERQFYLGVQL 167 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H+ + + +LA VA + ++ D + VL A+ V+ + + Sbjct: 168 HQNLLP-IKDALTELAKETGTLPVALQDVRYIDATDDFSTRVLRAINKGEVLETQHAAVI 226 Query: 249 TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + ++ + EA + T +IA + ++ +LP+F +K Sbjct: 227 GEYYLPESSQAEKRFIDNGLKEAAQRTNDIANMIDVEIALNQQLLPKFPLP----TEKTT 282 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ + + GLE R+++ + Y RL++EL VI +M F YFLIV D + +A Sbjct: 283 TEFLKEQCLVGLEKRVSE-------PDKRYTDRLEYELTVIGKMGFEDYFLIVWDVMAYA 335 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K I G GRGS AGS+ AY L ITD+DP+ + LLFERFLN +R +MPD D+DF +RR Sbjct: 336 HKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYDLLFERFLNEERYTMPDIDLDFPDNRR 395 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +++++YV+NKYG VAQI TFG+L AK AL+DV R + S+ K IP+ + Sbjct: 396 EDILQYVKNKYGKNHVAQIATFGTLAAKMALKDVSRVFGLSPSEASVWSKAIPSVLGITL 455 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 R + L E ++K+EGL RH STHAAG+VI D+PL+ VP+ + Sbjct: 456 EKA-FKQSVNLRNLVGENEKNTLLFETAKKIEGLPRHISTHAAGVVISDKPLTHYVPLQK 514 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 SD+ +TQ+ M +E+ GL+K DFLGLK L+++ +L + G +++L IP D Sbjct: 515 GG-SDILLTQYPMGNVEEIGLLKMDFLGLKNLSIIDNALKLIQRETGERLNLLNIPMQDQ 573 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ET L +GIFQ ES+G++ L ++P +EDI A+ +LYRPGP++ I + RK Sbjct: 574 ETLQLFRKGDMVGIFQFESAGIKSVLRRLEPTSMEDIAAVNALYRPGPMEQIDTFIKRKK 633 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G I H + +L T GV++YQEQVMQ+A + GY+L +AD+LRRA+GKK K +D Sbjct: 634 GLLPIEYPHETLSEILSVTYGVMVYQEQVMQVASKMGGYTLGQADILRRAIGKKQKSVID 693 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K+++ F SGA+K G S +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP Sbjct: 694 KERQHFTSGAAKLGYSPEVAIQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPHA 753 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A + ++N K+K + +A++ NI+++ P +N F + +I + ++IKG+ Sbjct: 754 FFVALLNSALNNSAKMKDYIIEAKKRNIKVLSPDINASFGGFSLVKGQILFGFSSIKGLR 813 Query: 847 TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 ++ + + L DF R++ K L ++ L++ GA D F YSR LL S+ Sbjct: 814 RDMIDDMVTNRKNDGSYKDLIDFLKRLNKKWLKPEYIKPLIYVGAFDQFEYSRGTLLASI 873 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 + I + + + + +F K E S + ENE+ LG Y SG Sbjct: 874 EGIIQSV-----HMSGNNSGLFELL------KPKYEFASDLTIEEKLENEELFLGTYLSG 922 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP + Y + I E + G R+ + + + T+KG + +VT S+ + Sbjct: 923 HPTEKYDSVRPWKQIVYVNELI---IGKTSRVIGSIKNIHKITTKKGEPMAFVTISDTSG 979 Query: 1026 EYEANFFP 1033 + FP Sbjct: 980 DCSLTLFP 987 >gi|254874369|ref|ZP_05247079.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254840368|gb|EET18804.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] Length = 941 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 368/956 (38%), Positives = 551/956 (57%), Gaps = 37/956 (3%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HL+VH+ YS+++ + L ++ + A+A+TD NLF+A++F ++A A+GI+PI G Sbjct: 4 HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131 +L +D + + +VLL +GYQ +++LVS+ Y D+ I Sbjct: 64 VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190 SWL E+ E +I L GG G + +A A++ + ++FG + + + + Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248 + + ++ A + L VATN ++F+ +DY+ H++ + T + + R + Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 T + YLK+ EM FS LP ++NT+ IA+RC+ ++ P LP E+ Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286 Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 GL+ RL + A + + Y+ RL E+++I M F GYFLIV DF Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RD VI+YV+ KYG E VAQIIT+G++ AK +RDV R + + DR+ KLIP P Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + E AD V ++E +QKLEGL R HAAGIVI +S Sbjct: 467 GTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599 P+Y + + VTQF+ +E GL+KFDFLGLK LT++ ++ + + ++ Sbjct: 526 PVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585 Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659 IP DD +T+ LL T GIFQLES GMRQ ++ + E+IIALV+LYRPGP++NI Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + +RK+ +++I +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L AD+LRRAMGK Sbjct: 646 TFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705 Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K EEM+KQ++ F A + I +A IF+ + FA YGFNKSHAAAYA+I+YQTAW Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837 +K HYP E++AA M+ +M N +++ KF D + +I ++ P+VN D V I Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTILL 825 Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L AIKG+G + I+ F S+ D C RVD +K+N++ LE+L +AGA+ Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSS 949 +R S++ K A +V + +++F + LE+ N Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLK 941 >gi|170697435|ref|ZP_02888526.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170137614|gb|EDT05851.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 1049 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 281/1044 (26%), Positives = 464/1044 (44%), Gaps = 77/1044 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AA + Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L E +S + + K + Sbjct: 70 LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117 Query: 129 VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 R+ ++ + + +L+ F + Q + ++ F ++FG Sbjct: 118 YRLAPLDVEHPEAPFTHLRTLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168 Query: 180 DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR +V L H R D V ++A H +P+VAT+ L DVL + Sbjct: 169 DRAWVALTLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V + + P+ RS + ALE TV +ARRC+F L P + Sbjct: 229 PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVP 287 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D LR + G R G D + +++ EL +IA +K+ YFL Sbjct: 288 AGTD----ATTYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFL 337 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V D +Q+A++ I GRGS A S Y L +T++DP R S+LFERF++ +R PD Sbjct: 338 TVYDIVQFAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDI 396 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF RR+EV++Y+ KYG +R A + + ++ALR+ G+AL + + VDR+ K Sbjct: 397 DVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQ 456 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + LQ A+ P + + +L G RH S H+ G VI Sbjct: 457 HHWFDSRADLLQRFAE----AGLDPEAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 L++LVP+ D + Q++ IE G++K D L L L++++++LD + +RG + Sbjct: 513 LTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFE 572 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP +D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ Sbjct: 573 LEDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632 Query: 658 IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ + + E + ++ L T GV I+QEQVMQ+A L +G+S EAD LRR Sbjct: 633 GMVHPFLRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692 Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM K ++ ER +SG + G + A +IF + F +YGF +SHAA++A++ Y Sbjct: 693 AMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +AW++ H P FLAA + + + QDAR+ ++++P VN D + Sbjct: 753 SSAWLRRHEPGVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPT 812 Query: 835 ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + + ++G+ A + A A +PF + D R +L+R L+ L A A Sbjct: 813 TSAPVRLGFSLLRGMREDVAGRVELARAARPFVDVADLARRA---RLDRHDLQVLARANA 869 Query: 891 LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 L G +R A ++ + + + + Sbjct: 870 LRSLAGGNRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEG 913 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + R +GF HPL + + L ++ ++ G R +V +Q+ T Sbjct: 914 KEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQPADQLATLRSGQLARACGLVTVRQRPGT 973 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + + +P Sbjct: 974 ANG--VLFMTLEDETGQVNVILWP 995 >gi|111023190|ref|YP_706162.1| error-prone DNA polymerase [Rhodococcus jostii RHA1] gi|110822720|gb|ABG98004.1| DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha subunit) [Rhodococcus jostii RHA1] Length = 1084 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 268/1031 (25%), Positives = 448/1031 (43%), Gaps = 70/1031 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ AIA+TD + + + F++ A ++ Sbjct: 61 YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTA 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D +++L EGY+RL ++ +L K +R Sbjct: 121 FGSELTLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGKLR 163 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L L + +LTG G + +A A RL FG DR+ V L H Sbjct: 164 YDLDRLTDAAGGHWQILTGCRKGHVRQALAAGGPDAAAARLRELIDRFGADRVTVELTHH 223 Query: 190 RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D R + + +LA H LP++A+ + F + AV + Sbjct: 224 GIAEDAERNASLAELAQQHGLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAAGHL- 282 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + L A V A ++ + E Sbjct: 283 --APAGGAHLRSGEEMAHLFAAYPEAVRGAADLGRECAFDLRLIAPQLPPFDVPDGHTEA 340 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + G R A + YRQ ++ EL++I + F GYFL+V D + + K Sbjct: 341 SWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELDIITGLNFPGYFLVVHDIVSFCK 395 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 N+I GRGS A S YA+ IT++DP+R LLFERFL+P+R PD D+D DRR+ Sbjct: 396 NNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRRE 454 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E I++V KYG + AQ+ + + K+++RD+ RAL Q D K + Sbjct: 455 EAIQHVYAKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWGGIGKE 514 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + +LE++ ++EG RH H+ G+VI DRP++ + P+ Sbjct: 515 --------------VGTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEWA 560 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 + V Q++ GL+KFD LGL L+ L +D +A+ ++VDL+ + + Sbjct: 561 RMENRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEEA 620 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R+ Sbjct: 621 VYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRRR 680 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724 N E + HP ++ LK T GV ++QEQ+MQ+A ++G+S +EAD LRRAM K+ E+ Sbjct: 681 NKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSKRSPEK 740 Query: 725 MDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M++ + R G + +GI +A I+E L FA++GF +SH+ ++A + + ++W K H+ Sbjct: 741 MERLRGRLYQGMRELHGIGDDVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLHH 800 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAA 841 P F A + + + DAR+ + + +N V + L Sbjct: 801 PAAFCAGLLRAQPMGFYSPQSLVADARRHGVPVHGADINASLAHATVEAGGTEVRLGLGE 860 Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ +GT A I+E+ D P+ S D RV+ L+ ESL AGALD FG SR + Sbjct: 861 VRHIGTALAERIVESRGDGGPYTSFLDLTGRVE---LSTAQAESLATAGALDSFGLSRRE 917 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L + A ++R + + G Sbjct: 918 ALWA----AGAAAGERRDRLPG-----------IGASTRAPTLPGMSDLELAAADVWATG 962 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 +P +P L +G+ + G+ + + V +Q+ T G + ++ Sbjct: 963 VSPDTYPTQFLRPQLDALGVIPAAGLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFINL 1020 Query: 1021 SEPAKEYEANF 1031 + Sbjct: 1021 EDETGMVNVVC 1031 >gi|134103090|ref|YP_001108751.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338] gi|291003967|ref|ZP_06561940.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338] gi|133915713|emb|CAM05826.1| DNA polymerase III, alpha subunit, putative [Saccharopolyspora erythraea NRRL 2338] Length = 1056 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 283/1038 (27%), Positives = 455/1038 (43%), Gaps = 66/1038 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++ + A AIA+TD + ++ + FS+ A G++ + Sbjct: 19 YAELHAHSNFSFLDGASHPEELVAESARLGLEAIALTDHDGMYGVVRFSEAAAEHGVRTV 78 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P +++L GY RL +S L Q K Sbjct: 79 FGAELSLGL-----TAAQTGVPDPEGNHLLVLARDPGGYARLCREISSAQLAGQEKGRPT 133 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189 L L E + ++LTG G + A A L LF G+ + V L Sbjct: 134 YRLEQLAEAAEDHWLVLTGCRKGAVRSALAEGGPAAAAAELDRLVALFGGENVAVELTDQ 193 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247 D R + LA LP VATN + F + V+ A+ + Sbjct: 194 DLPTDSERNDVLFALARDAGLPAVATNGAHFAGPWNGRMASVVAAIRARRGLDEMDGWLP 253 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 ++L++ EM F+ P A+E + R C+F L++ AP LP F E + E Sbjct: 254 AWAGNHLRSGEEMAERFARYPGAVETAARLGRECAFDLRLVAPRLPPFDVPEG----RTE 309 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G R +++ EL VI ++ F GYFL+V D + + Sbjct: 310 AEWLRELTYRGALRRYG-----LPQDNPAAYAQIEHELAVIEKLDFPGYFLVVHDIVSFC 364 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S +AL IT+ DP+R+ LLFERFL P+R PD D+D DRR Sbjct: 365 GEMGIL-CQGRGSAANSAVCFALRITNADPVRYDLLFERFLAPERDGPPDIDLDIESDRR 423 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I+YV KYG AQ+ S + K+A+RDV RAL Q D K I + P Sbjct: 424 EEAIQYVYRKYGRTHAAQVANVISYRPKSAVRDVARALGYSPGQQDAWSKQIEHWGPLPD 483 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + P RH H+ G+VI +P+S++ P+ Sbjct: 484 DGEVPDQVRELAGELMGYP----------------RHLGIHSGGMVICHQPVSEVCPVEW 527 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L+ L ++D + ++VDL + D Sbjct: 528 ARMPGRTVLQWDKDDCASVGLVKFDLLGLGMLSALHYAIDLAREHHGIEVDLGELDLADD 587 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L +G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 588 EVYAMLRRADAVGVFQVESRAQLATLPRLKPRKFYDLVVEVALIRPGPIQGGSVHPYIRR 647 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E HPL+ L++T GV ++QEQ+MQ+A ++G+S EAD LRRAM K+ +E Sbjct: 648 RNGEEDWDYEHPLMAAALEKTLGVPLFQEQLMQLAVDIAGFSAGEADELRRAMGSKRSEE 707 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + + R G + NGI+ +A I++ L FA++GF +SHA ++AV+ + ++W K +Y Sbjct: 708 RMARLRGRLFEGMAVNGITGELAERIYQQLLAFANFGFPESHALSFAVLVFASSWFKRYY 767 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIY 836 P F AA + + + DAR+ +++ P VN + + Sbjct: 768 PAVFCAALLKAQPMGFYSPQSLVADARRHGVRVHGPDVNASRGQADLEPDAESEGGQAVR 827 Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 LA+++ +G + A ++ + P+ + D R+ LN +E+L AGA CFG Sbjct: 828 LGLASVRTLGDSVAEQLVAERTENGPYTGMADLSRRMS---LNAAQMEALATAGAFGCFG 884 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + L + ++ + + + + + Sbjct: 885 LSRREALWN----------AAAAAGDRPDRLPGTTVSADA-----PPLPGMDGVELAAAD 929 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +PL + L +MG + G + + V +Q+ T G + Sbjct: 930 VWATGISPDSYPLQFLRSRLGEMGALSAADLSEVDNGERVLVGGAVTHRQRPATAGG--V 987 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 988 TFLNLEDETGMINVVCTP 1005 >gi|67459636|ref|YP_247260.1| DNA polymerase III subunit alpha [Rickettsia felis URRWXCal2] gi|75535968|sp|Q4UK40|DPO3A_RICFE RecName: Full=DNA polymerase III subunit alpha gi|67005169|gb|AAY62095.1| DNA polymerase III alpha chain [Rickettsia felis URRWXCal2] Length = 1207 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 384/1107 (34%), Positives = 579/1107 (52%), Gaps = 105/1107 (9%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ PAI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 PI G L+I I+L+ GY+ L++L S + + K Sbjct: 63 PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLC 110 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 I L E EGLI L + G + + S + A + + GDR Y + R Sbjct: 111 DHIDFEDLIEY-QEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMR 169 Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + E +++A +PLVATN LF + ++AHDVL+ ++ DR Sbjct: 170 HDLPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDRKT 229 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 V+ + Y ++ EM+ +FSDLP A++NTV + RC F A + E Sbjct: 230 VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360 + +R A GL RLA ++ Q +Y RL++EL++I M F+GYFLIV Sbjct: 285 TDLIRKDAKEGLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIV 344 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +DFI+W+KK I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI Sbjct: 345 SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY D L +L+P Sbjct: 405 DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464 Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530 +PVS QA+ + A + + +L+ S LEGL+RH+STHAA Sbjct: 465 FSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 GIVI L +VP+Y+D SD+ V ++MK+ E AGLIKFDFLGL+TLT++ L Sbjct: 525 GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 ++G++VD + + FDD++TY +L +G+FQ ES GM+ AL ++PD I D+IAL +LY Sbjct: 585 EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644 Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 RPGP++NI Y K+ ++ +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L A Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704 Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 D+LRRAMGKKIK+EM++Q+E F+ GA N IS++ A +IF +AKFA YGFNK+HAAAY Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764 Query: 771 VI-----------------SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813 VI + + H + + + Sbjct: 765 VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFSV 824 Query: 814 IQIMPPSVNTPCVD---------------------------------------------F 828 ++P + + Sbjct: 825 KSVIPQAATCHPQGPLCHPRVGGYPEKVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGY 884 Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + I ++L AIKGV + + + F S+ DF R+ K +N ++LE+L+ Sbjct: 885 DKEKSTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIK 944 Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 +G D +R+QL S+ + Y+ + + ++ + + L + Sbjct: 945 SGCFDELHDNRLQLFSSISKLLAYSASYHAEQESNQFSLIKVSSLSPNI---LIASDYAD 1001 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQ 1005 ++ E +G + S HPL Y+ I ++ I + G + LA ++ K Sbjct: 1002 NNTLAFYEFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKD 1061 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + + +G R + S+P +E + F Sbjct: 1062 SRMSARG-RFVTLVLSDPENIFELSIF 1087 >gi|124263148|ref|YP_001023618.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1] gi|124262394|gb|ABM97383.1| error-prone DNA polymerase, DnaE-like protein [Methylibium petroleiphilum PM1] Length = 1033 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 270/1034 (26%), Positives = 461/1034 (44%), Gaps = 72/1034 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L+ S++S L GA ++++ A+AITD ++ + A G+ Sbjct: 7 PAYAELRCLSAFSFLRGASMPEELVERAKELGYSALAITDECSVAGVVRAHVTAKEQGLP 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG Q ++ ++V+L T +GY L E ++++ + K + Sbjct: 67 LIIGSQFQLE---------------DAPFTLVVLAQTLQGYGNLCEFITKLRMAS-PKGT 110 Query: 129 VRICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 R+ L L E L+++ + + K F R ++ ++ Sbjct: 111 YRLQLTDVLPGPLAECLVLVAPDRTAF---------PEELLKVARWMLTHFSGRCWLAVE 161 Query: 188 RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R D ++ +++ +PLVAT + DV+ A + Sbjct: 162 LLRLLDDEMWLHKLREVSELTAIPLVATGDVHVHVRSRKALQDVMTATRVGKPL-TGCGG 220 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + P+ R+ + + E L T +A CSF L P + + Sbjct: 221 ALQPNAERHLRTRLRLAQTYPEELLTETSRVASLCSFSLDELKYQYPAEVVPVGE----T 276 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR G R +G A + +++ EL +I+ + + YFL VAD + + Sbjct: 277 ASSFLRRLTYEGAGRRWPEGMQA------KVQTQIEHELKLISELGYEHYFLTVADIVNF 330 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I GRGS A SV Y L +T++DP R S+LFERF++ +R PD D+DF +R Sbjct: 331 ARSRHIL-CQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISKERNEPPDIDVDFEHER 389 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI Y+ KYG R T S + K+A+RDVG+AL VDR+ K Sbjct: 390 REEVIHYLYGKYGRHRAGLTATVISYRPKSAIRDVGKALGFDLETVDRVAKNHMWFEGRQ 449 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 V + +A+ D +V +LL ++ +L G+ RH S H G V+ PLS++VP+ Sbjct: 450 VLTERMAEV----GLNPEDLAVKQLLALTGQLIGMPRHLSQHVGGFVLTKGPLSRMVPIE 505 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 D V +++ ++ GL+K D L L LT ++KSL+F+ QR + ++ IP +D Sbjct: 506 NAAMEDRTVIEWDKDDLDALGLLKVDVLALGMLTAIRKSLEFIGQRKGYRFEMQDIPAED 565 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 ETY +++ T+G+FQ+ES L M+P+C D++ V++ RPGPI +V+ N Sbjct: 566 PETYRMISKADTVGVFQIESRAQMSMLPRMKPECFYDLVIEVAIVRPGPIQGGMVHPYLN 625 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722 R+ GKE +V + L T GV ++QEQVMQ+A L +G++ EAD LRR+M K Sbjct: 626 RRQGKEPVVYPSEALKEALGRTLGVPVFQEQVMQVAILAAGFTPGEADQLRRSMAAWKRK 685 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +D+ R + G + G K A IF+ + F++YGF +SHAA++A++ Y + W+K H Sbjct: 686 GGLDQYYSRIVDGMTARGYEKAFAEQIFQQIHGFSEYGFPESHAASFALLVYASCWIKCH 745 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYS 838 +P EFLAA + + + QDA++ + + P V D + + Sbjct: 746 HPAEFLAAMLNSQPLGFYTPSQLVQDAKRHGVDVRPVDVMYSDWDCTLEGLPHPPAVRLG 805 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L + G+ + + ++ A + PFD+ ED R L + ++ L A AL R Sbjct: 806 LRQVSGLKAESVQRLVAARQEAPFDNAEDLARRA---ALEQHEMKLLAAADALMSLSGHR 862 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q + ++ + + + + Sbjct: 863 RQQVWDAAALRSTPKLLR----------------DAPVDEEFLELPEAPEGEEIVWDYAS 906 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 G HPL + +P L + E+ G ++ +V +QQ T G + +V Sbjct: 907 TGLTLRRHPLALLRPQLEARRLLTAEQLDRLPNGRHVGTCGIVTLRQQPDTANG--VIFV 964 Query: 1019 TFSEPAKEYEANFF 1032 + + + + Sbjct: 965 SLEDETGVVQVICW 978 >gi|328957332|ref|YP_004374718.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4] gi|328673656|gb|AEB29702.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4] Length = 1112 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 344/1028 (33%), Positives = 546/1028 (53%), Gaps = 46/1028 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV LQV SSYSLL+ S+ ++ K AIA+TD N L+ ++F + I+P Sbjct: 2 SFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G LD+ G SI+LL A GY+ L+ L S LL + + Sbjct: 62 ILGLTLDV----------GGVVNNEETYSIILLAKNARGYESLMALSSEKMLLTENEW-- 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 + + + + ++ LI +T G G + + + A K + ++ F + Y+ +Q Sbjct: 110 -LTIEHISQY-SQNLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYLGIQL 167 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H+ + + V +LA VA + ++ D + VL A+ V+S + Sbjct: 168 HQKL-KVIQDAVNELANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQEAEE 226 Query: 249 TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + ++ + +A + T E+A+ + +H +LP+F + Sbjct: 227 GEYYLPESNEVEKLFKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPKDTVTT--- 283 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ + + GL + + Y +RL++EL VI +M F YFLIV D + +A Sbjct: 284 -EFLKEQCLKGL-------TLRVVQPDERYTKRLEYELAVIQKMGFEDYFLIVWDVMAYA 335 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 K I G GRGS AGS+ AY L ITD+DP+ ++LLFERFLN +R +MPD D+DF +RR Sbjct: 336 HKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYNLLFERFLNEERYTMPDIDLDFPDNRR 395 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E++ YV+NKYG VAQI TFG+L AK AL+DV R + S+ + K IP + Sbjct: 396 EEILHYVKNKYGQNHVAQIATFGTLAAKMALKDVARVFGLSPSEANVWSKAIPKILGITL 455 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + R+ + L + ++++EGL RH STHAAGIVI D PL+Q VP+ + Sbjct: 456 EKA-YKESVTLRKLVEENDKNKLLFKTAKRIEGLPRHISTHAAGIVISDNPLTQYVPLQK 514 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 ++ +TQ+ M +E+ GL+K DFLGLK LT++ +L + G ++DL IP D Sbjct: 515 GG-GEILLTQYPMGNVEEIGLLKMDFLGLKNLTIIDNTLKLVQRETGKRLDLLTIPMQDQ 573 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 ET L +GIFQ ES+G++ L ++P IEDI A+ +LYRPGP++ I + RK Sbjct: 574 ETLQLFRQADMVGIFQFESTGIKNVLRRLEPSSIEDIAAVNALYRPGPMEQIDTFIKRKK 633 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 G I H + +L T GV++YQEQVMQ+A + GY+L +AD+LRRA+GKK K +D Sbjct: 634 GVLPIEYPHESLSEILAVTYGVMVYQEQVMQVAAKMGGYTLGQADILRRAIGKKQKSIID 693 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 K++ FISGA++ G +K +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP Sbjct: 694 KERHHFISGANQLGYTKEVAMQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPNA 753 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A + +++ K+K++ +A++ I+++PP++NT F + +N I + +IKG+ Sbjct: 754 FFVALLNSALNSSAKMKEYIIEAKKRKIKVIPPNINTSFSGFTLTENNILFGFNSIKGLR 813 Query: 847 TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 +++ D + L DF R+D K L ++ L++AGA D F YSR LL S+ Sbjct: 814 RDMIVEMIQNRKSDGKYLGLIDFLKRLDKKWLKPEYIKPLIYAGAFDQFDYSRGALLASV 873 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D I + + + + ++F K E + E E++ LG Y SG Sbjct: 874 DGIVQSIK-----MSGNNIDLFELL------KPKYEFAPDLTLEEKLETEEQYLGTYLSG 922 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP + Y LR+ Y G R+ MV + + +T+KG + +VT S+ + Sbjct: 923 HPTEKY-DQLRQWKQVEYT--SELTIGKTSRIIGMVKNVHKIRTKKGESMAFVTISDTSG 979 Query: 1026 EYEANFFP 1033 + FP Sbjct: 980 DCSLTLFP 987 >gi|163757930|ref|ZP_02165019.1| putative dna polymerase iii alpha chain protein [Hoeflea phototrophica DFL-43] gi|162285432|gb|EDQ35714.1| putative dna polymerase iii alpha chain protein [Hoeflea phototrophica DFL-43] Length = 1123 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 260/1057 (24%), Positives = 464/1057 (43%), Gaps = 76/1057 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P++V L S++S L GA ++ + A IA+TD N+L + A Sbjct: 1 MPD-PAYVELAAASNFSFLRGASHTEELVVQAARLGLGGIALTDRNSLAGVVRGHMAAKE 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ +GC+L P I++ Y L EL++ Sbjct: 60 AGLAFAVGCRLVF---------------MDGTPDILVWPEDRAAYGNLCELLTLGKRR-A 103 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K + L G L+ L ++G + + L + F D L++ Sbjct: 104 PKGECHLTLEDCLAHGRGLLMALVPPAAG-------SDRMKALPPVLERLRTAFPDHLHL 156 Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242 L R H D+ + + +LA TH++PLVA + L+ + E DVL + T+ + Sbjct: 157 ALTRHHGPDDQRHMAAIARLAQTHDVPLVAIGDVLYHAPERRPLQDVLTCIRERETLATI 216 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + + +L++ +EM+ +F +A+ ++ R F L P E Sbjct: 217 GTRLKPNAERHLRSHAEMLHLFKGYEQAVAQAAKLFARICFSLDELRYQYPDAPLFEALS 276 Query: 303 IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + E L GL+ R G + + + EL +I ++ ++ YFL V Sbjct: 277 SEPLPAQEALERLTAIGLKKRYPDG------TPEKVLKAIAHELRLIRKLDYAPYFLTVY 330 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +++A+ +I GRGS A S Y L IT+++P + LLFERF++ +R PD D+D Sbjct: 331 DIVRFARSQDIL-CQGRGSAANSAVCYCLEITEVNPGKVDLLFERFISEERNEPPDIDVD 389 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR+EVI+Y+ KYG +R T + +A++A+R+VG+ + + + Sbjct: 390 FEHERREEVIQYIYEKYGRDRAGLAATVITYRARSAIREVGKVFGLSNDAIAAISGTKWG 449 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + V +D+R AD + ++L+++ ++ G RH S H G VI LS Sbjct: 450 GWSREVDP----EDARRAGLDPADKHLAQMLDLASQITGFPRHLSQHVGGFVITRDKLSS 505 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600 L+P+ D + +++ +E G++K D L L LT ++K+ G + L+ Sbjct: 506 LIPIENAAMEDRTIVEWDKDDLESLGMLKIDVLALGMLTCIRKAFDFLDTHYGRRETLAS 565 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P D TY ++ T+G+FQ+ES L ++P C D++ V++ RPGPI +V Sbjct: 566 LPDGDRATYDMICRADTIGVFQIESRAQMSMLPRLRPRCYYDLVIEVAIVRPGPIQGDMV 625 Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R+ G+E + P ++ +L +T GV ++QEQ M IA + G+S EAD LRRAM Sbjct: 626 HPYLRRRQGREPVSFPKPELEAVLGKTLGVPLFQEQAMNIAIVAGGFSPGEADKLRRAMA 685 Query: 719 KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + + +++ + G +NG + A + F + F +YGF +SHAA++A++ Y + Sbjct: 686 TFRRVGTIGSFQKKMVEGMLRNGYEREFAEHCFRQIEGFGEYGFPESHAASFALLVYVSC 745 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833 W+K HYP F AA + + + +DAR+ ++I P +N D + + Sbjct: 746 WLKCHYPDVFCAAILNSQPMGFYAPAQLIRDAREHGVEIRPVDINFSSWDALLEPDANPQ 805 Query: 834 -----------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + L +KG G A +++ +DS+ D R Sbjct: 806 PVSQRHHDMADVMKHSHAVRLGLRQVKGFGKADAAMLVDKRGRG-YDSVRDLWMR---SG 861 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 L+RR +E L A G R + ++ + + +FA + Sbjct: 862 LSRRAIEQLAEADCFRSIGLERRDAIWAVKALDPLSSAER-------LPLFAIADTSNLQ 914 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 + + N+ + L F HP+ + L + G + + G ++ Sbjct: 915 REPDIDLPPMPLGEQVINDYQSLSFSLKAHPISFLRANLARSGFRHNMDLAGIRSGVRVK 974 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +A +V+ +Q+ + KG + + T + +P Sbjct: 975 VAGLVLVRQRPGSAKG--VVFETIEDETGVANIIVWP 1009 >gi|227529180|ref|ZP_03959229.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227350905|gb|EEJ41196.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 1116 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 352/1032 (34%), Positives = 543/1032 (52%), Gaps = 54/1032 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FV LQV SS+SLL + +N ++ AIA+TD N L+ A++F A AGI+P Sbjct: 2 DFVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG QL I + + T ++ L GYQ L+EL +R D + ++ Sbjct: 62 VIGLQLTIALNN----------VDGTNLELLFLAKDRAGYQNLMELSTRQQTSD--RDTL 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ + +++ + L D L + + + Sbjct: 110 PLTFEQIKPFLSSLYVII--PPQSTVFSWLKA--EDTVVNLLHESTD--QDSLLLGI--N 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D+ + S + QLA +H LPLV + +L+ +D A VL A+ +T + + + Sbjct: 162 PQLDQIQRSTLTQLAASHSLPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKE 221 Query: 250 PDHYLKNRSE---MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L +A + TVEIA +C+ + PILP F K Sbjct: 222 LGKDYLQPQADILRAYQAVNLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTG----KS 277 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR + GL+ R IA G DY++RL EL VI M F YFLIV D +++ Sbjct: 278 SAEYLRYLCIEGLKKRQ----IAPGLKLVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRF 333 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I PGRGS AGS+ AYAL ITDIDPL+++LLFERFLNP+R MPD D+D +R Sbjct: 334 AHRTKITTDPGRGSAAGSLVAYALAITDIDPLQYNLLFERFLNPERAQMPDIDLDIPDNR 393 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R EV+ YV KYGH RVAQIITFG+L AK +RDV R + ++ L +P+ Sbjct: 394 RSEVLEYVHQKYGHNRVAQIITFGTLAAKQVIRDVSRVFGLNRYAINELTGALPHGLHIS 453 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + ++ + R R P L ++QKLEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 454 L-AGSLKESQRLRNLLNDHPEYRLLYRVAQKLEGLPRHYSIHAAGIVLSEKPLHEIVPLQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 L +TQF +E GL+K DFLGL+ L+++ SL + QR + DLS I D Sbjct: 513 NGS-EGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNSLKLIRQRNPQFDLSKISLADS 571 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 +T L T G+FQ ES+G+R+ L + PD EDI+A+ +LYRPGP++NI + RK Sbjct: 572 KTLALFQKGLTDGVFQFESAGIREVLVNLHPDSFEDIVAVNALYRPGPLENIPHFIARKQ 631 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKE P ++P+L T G+++YQEQVMQ+A +++G+SL EAD+LRRAM KK + M+ Sbjct: 632 GKEHYQLPDPSLEPILGATYGILVYQEQVMQLASVMAGFSLGEADLLRRAMSKKKRATME 691 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +F++GA NG S +A +F + +FA+YGFN+SHA AY+ +++Q A++K +YP E Sbjct: 692 GMRAKFMNGAQANGYSAELAKRVFNYIDQFANYGFNRSHAVAYSKMAFQMAYLKANYPAE 751 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M E NV+K+K QDAR+ ++++ P +N F + N++++ L AIKG+ Sbjct: 752 FFTALMNAE-PNVDKLKMHVQDARRSGVKLVGPRINESQQQFSLSQNQLFFGLTAIKGLR 810 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 R I++ + P+ + +F SR+ SK ++ L++AGA D GY+R +++ +L Sbjct: 811 RDFIREILQERQQNGPYKDIRNFISRLASKWQKPELIAPLIYAGAFDDLGYNRAEMIDAL 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFY 962 + Q +F+ +D T+ + R E LG Y Sbjct: 871 PMLISGIQ------------LFSSTNELEADPELQSTIAARQEYPLTERLAKENEYLGVY 918 Query: 963 FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFS 1021 SGHP+ Y+ + K ++ + G + + ++ + T+K R + +++ + Sbjct: 919 LSGHPVTQYQDLAIKYRVQPASQL---RPGQTVTILMLINRVKTIHTKKDHRQMAFLSGT 975 Query: 1022 EPAKEYEANFFP 1033 + E EA FP Sbjct: 976 DQTGEIEATVFP 987 >gi|313897381|ref|ZP_07830924.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2] gi|312957751|gb|EFR39376.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2] Length = 1026 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 353/1025 (34%), Positives = 566/1025 (55%), Gaps = 43/1025 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ L++ I+ A+A+TD + + A+ F I+PI Sbjct: 3 VHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++D+ Q+ L V+L GYQ L++L + + ++ RI Sbjct: 63 GMEVDVLEQEEL-------------YGFVVLAKNDAGYQNLLKLSTWLNTGEER----RI 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 + I+LT G ++ + L +K F D YV++ R+ Sbjct: 106 PDLDTLAYYAKDCIVLTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSD-FYVSIARNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G + + Q+ ++P A + F EED E++ L A+ + K Sbjct: 165 GLMEKKNPVLKQVCKELDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDKMLNYSPR 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 ++ + + + L+ + IA C +Q+ +LP+F K E Sbjct: 225 RYFRTPQEMQLLYEDEE---LQMSDRIAALCQVEMQLPKAVLPKFQNKYGV----SSEEF 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR+ GL+ R+ I+ Y+QRLD+EL+VI RM+++ YFLIV DFI++AK Sbjct: 278 LRSLCQKGLQKRMQYQPISS-----VYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF +RRDEV Sbjct: 333 HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+ YG RV+ IITF +L AK LRDVG+A+++ Q+DRLCKL+PN + Sbjct: 393 IHYVEQLYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVIKVTLDYA 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 +D+RF+E + ++ RL ++KLEGL RHAS HAAGIV D + Q+ P+ DV Sbjct: 453 -YQNDARFKELINSGETMRRLYATARKLEGLPRHASLHAAGIVFSDEAIEQVCPLI-DVD 510 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609 + TQF M+++E+ GLIK DFLGL+ LT++ + + + K D+ IP DD +TY Sbjct: 511 EGICATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINATADKKLDIMRIPLDDAKTY 570 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L+ T+G+FQLES GM+ + MQP+C EDI+A ++L+RPGP++NI Y +R+ E Sbjct: 571 ALIRAVDTVGVFQLESEGMKNLIRKMQPNCFEDIVATIALFRPGPMENIPEYLDRREHPE 630 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK EE+ + + Sbjct: 631 KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGEELRRMQ 690 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 FISGA + G + +A ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 691 AEFISGALRKGYDEALAQKVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 + + + + K ++ +AR+ NIQI+ P VN + + DN + + IKG+G+ Sbjct: 751 SLLNSVIGSETKTSEYVFEARKRNIQILLPDVNRSHNQYGIEDNALRFPFVGIKGIGSAV 810 Query: 850 ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 + I+E F DF +R++ K+ ++ +E L++AGALDCF R L+ SL++ Sbjct: 811 SSLIVEERDKKGEFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKVGRASLMASLEDA 870 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +YA V+ ++ +F + + + N+++R E E+ +GFY S HP+ Sbjct: 871 LRYADLVKIEDVDQV--LFDFDLVSKPAMTMMRD----NATIRSEKEKEAIGFYLSRHPI 924 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + K S+ +G ++ +V +Q +T+ G + +V S+ +++ Sbjct: 925 ADVRSRMGK--DLPILISLPKYKGRYVKFVCLVDRCRQYRTKNGDMMMFVIGSDETGKFD 982 Query: 1029 ANFFP 1033 P Sbjct: 983 LVCMP 987 >gi|212638343|ref|YP_002314863.1| DNA polymerase III subunit alpha [Anoxybacillus flavithermus WK1] gi|212559823|gb|ACJ32878.1| DNA polymerase III, alpha subunit [Anoxybacillus flavithermus WK1] Length = 1077 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 350/1035 (33%), Positives = 555/1035 (53%), Gaps = 77/1035 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + SF+HLQV S YSLL + + ++ + Q PAIA+TD N L+ + F + A Sbjct: 1 MGDTLSFIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+PIIG I + +VLL +GY++L+ + + + D Sbjct: 61 HGIKPIIGMMATIMDEHGHPD------------QLVLLAKNNDGYRQLVHIATAIQTNDG 108 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 I L +E LI +T G G +++ + AE + T+ KLF Y Sbjct: 109 KG----ISLLDFSHHTSE-LIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFY 163 Query: 184 VNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 +N+QRH ++ ++ + + ++PLVATN+ ++ +ED A + L+A+ H + Sbjct: 164 INVQRHGLQEQEHLLSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVD 223 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +RPR T +++LK+ EM ++FS+ EA+E TV IA+RC + +PR+ Sbjct: 224 PNRPRLATNEYHLKSAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSG- 282 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 K + L Q + Y RL +EL +I +M FS YFLIVA Sbjct: 283 ---KTADEYL-------QTWCWEQFTKRFPDRPKAYVARLQYELQIIQQMNFSDYFLIVA 332 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 DF+++A++ I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP R+S+PD DID Sbjct: 333 DFVRFARERGILTGPGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDID 392 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F DRR+EVIRY++ KYG + VAQI+TFG+ ++A+R+VGR + ++ + Sbjct: 393 FPDDRREEVIRYIEQKYGTDHVAQIVTFGTFGMRSAIREVGRVFDVDEREIQQTLATGSF 452 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 D P ++Q++EGL +H S HAAGIVI RPL+ Sbjct: 453 DRTRPW------------------------HYVAQRIEGLPKHTSVHAAGIVISPRPLTD 488 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600 ++P+ ++ VTQ+ M +E+ GL+KFD L LK LT++++ + + QR Sbjct: 489 IIPLQ-SGQTTTYVTQYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHRLSFEN 547 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P DD +TY LL+ T G+FQLES GM++ L +QP EDI+A+ +L+RPGP++ I Sbjct: 548 MPIDDQKTYALLSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQIPT 607 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 Y RK+G+E I +H + +L+ T GVI+YQEQ+M+IA+ ++ +SL++AD+LRRA+ KK Sbjct: 608 YIARKHGREPIRYMHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKK 667 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +M+K+K+ FI G +NG +A ++EL+ +FA YGFN+SHA AY+ I+Y A++K Sbjct: 668 DVGQMEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIK 727 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840 HYP++F AA +T EK+ + + R I+++PPS+ F V DN I + L Sbjct: 728 AHYPLDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNGIRFGLL 787 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 AIK V + ++ +PF DF SR+ + ++V+E+L+F+G D F R Sbjct: 788 AIKQVNAAFVKQMVRERQKRPFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERAT 847 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L S+D ++A+ + + + + + + E++ L Sbjct: 848 LYASIDVAIEHAELMN---------------FSLHVQPKYVHAEPLSLIDQLKYEKQWLN 892 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 Y S HP++ + G K E G + V +K+T+KG + +V Sbjct: 893 VYVSPHPVESFSHFYSMWGAKRMYEWTKENVNHGK---VIVYVEEVTRKRTKKGEEMAFV 949 Query: 1019 TFSEPAKEYEANFFP 1033 T + + E++A FP Sbjct: 950 TICDDSDEWQAVVFP 964 >gi|302524129|ref|ZP_07276471.1| error-prone DNA polymerase [Streptomyces sp. AA4] gi|302433024|gb|EFL04840.1| error-prone DNA polymerase [Streptomyces sp. AA4] Length = 1053 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 274/1045 (26%), Positives = 468/1045 (44%), Gaps = 69/1045 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++ L HS++S L+GA ++++ A + AIA+TD + ++ + F++ A G+ Sbjct: 2 AYAELHCHSNFSFLDGASHPEELVEEAARLRLDAIALTDHDGMYGVVRFAEAAKELGVAT 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124 + G +L + Q P ++LL ++GY+ L ++ L Sbjct: 62 VFGTELSFGLS-----APQNGVADPEGEHLLLLARGSDGYRSLCRAITAGQLRGHDEKDA 116 Query: 125 ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180 K LS + E +LTG G + A A L LFG Sbjct: 117 ERAEKGRPIYDLSAVAEEVVGKCAVLTGCRKGSVRSALVREGPDAAFAELRRLVDLFGRT 176 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++YV L H D + ++A +LP VAT + + E D L A+ Sbjct: 177 QVYVELIDHGQPLDSTHNDLLAEMADELKLPTVATTAAHYARPERGRLADALAAIRARRG 236 Query: 240 VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + + +L++ +EM IF P A++ + + C+F L++ AP LP F Sbjct: 237 IDDLEGWLPGDAAAFLRSGNEMAEIFQRYPGAVQRSALLGMECAFPLKLLAPKLPPFDVP 296 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 + + E LR G + R +++ E+ VI + F GYFL Sbjct: 297 KGE----TETTHLRALVREGFKERYRGKPKEAQA-----EKQIKHEMEVIESLGFPGYFL 347 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D +++ ++ +I GRGS A S YAL IT +DP++++LLFERFL PDR PD Sbjct: 348 IVWDIVRFCREQDIL-CQGRGSAANSAVCYALGITKVDPIKYNLLFERFLAPDRDGYPDI 406 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+D DRR+E I+YV K+G AQ+ + +A++A+RD RAL Q D K Sbjct: 407 DLDIESDRREEAIQYVYGKHGRLNAAQVANVITYRARSAIRDAARALGYSPGQQDAWSKQ 466 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 I A + + + +++++ LE RH H+ G+V+ P Sbjct: 467 IDRWGALRSTEK-----------DHDHDIPNDVVQLAFALEDFPRHLGIHSGGMVMCREP 515 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597 +SQ+ P+ + V Q+ + GL+KFD LGL L+ L LD + + + ++D Sbjct: 516 VSQVCPVEWARMENRSVLQWEKEDCAAVGLVKFDLLGLGMLSALHYMLDLVKEYKDEEID 575 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656 L+ + D Y +L +G+FQ+ES L ++P D+ V+L RPGPI Sbjct: 576 LAELDLADENIYEMLCHADAIGVFQVESRAQLATLPRLRPKEFYDLAVEVALIRPGPIQG 635 Query: 657 -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 ++ Y RK G+EK HPL+ LK+T GV ++QEQ+MQIA ++ ++ +EAD LR Sbjct: 636 GSVHPYIRRKQGREKWEYDHPLLKNALKKTLGVPLFQEQMMQIALDVAKFTPAEADQLRH 695 Query: 716 AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM K+ + +M++ +RF+ GA NG+ +A IF+ L FA++GF +SHA ++A + + Sbjct: 696 AMGSKRSQRKMERLHKRFLDGAVANGVDAELAEKIFQKLKAFANFGFPESHALSFAHLVF 755 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832 +A+ K ++P F A + + + DAR+ + + P +N + Sbjct: 756 ASAYFKHYHPDAFCAGLLRAQPMGFYSPQSLVADARRHGVTTLGPDINRSLPHATLEALP 815 Query: 833 -----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + + L+ ++ +G T A I+ A+ ++S+ D RV +L LE+L Sbjct: 816 DNGKLHAVRGGLSTVRMIGETLAEEIVAERQANGRYESMSDLGRRV---RLTTPQLEALA 872 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA FG R Q L S + ++ E + G + Sbjct: 873 TAGAFSAFGPDRRQALWSAGAV----------AQDRPEKLPGTGVG-----VDAPMLPGM 917 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + G +P + + L +G+ ++ + G + + V +Q+ Sbjct: 918 DGLDLAAADVWATGISPDSYPTEFIRDRLDALGVVTADKLLDREDGERVLVGGAVTHRQR 977 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031 T G + ++ + Sbjct: 978 PATAGG--VTFLNLEDETGMVNVIC 1000 >gi|320324026|gb|EFW80109.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str. B076] Length = 1031 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 269/1043 (25%), Positives = 458/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ + A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E ++GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L + Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD ETY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + +GY+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G KNG A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ ++ + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|66045759|ref|YP_235600.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae B728a] gi|75502059|sp|Q4ZTG0|DNAE2_PSEU2 RecName: Full=Error-prone DNA polymerase gi|63256466|gb|AAY37562.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae B728a] Length = 1031 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 267/1043 (25%), Positives = 455/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + + L S++S GA S + ++ A+AITD L + Q + + Sbjct: 1 MTRE--YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ I+G ++ I+ P +VLLV GY+ L +L++ Sbjct: 59 TGLPLIVGSEMHIENG----------------PKVVLLVENQAGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 GK R+ E +GL+ L ++Q ++ F +RL++ Sbjct: 102 GKGEYRVLREDF-EPAPDGLLALWLPD--------LDGNAQACLAGGRWLRERFAERLWL 152 Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 + HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVGLHRGPDDEQRLADLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L P + + Sbjct: 213 GHLLFANGERHLRPLDALSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G+ R G R +++ EL +IA KF YFL V D Sbjct: 269 --QTSTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L + Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPEQINALAEAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + + + P ++ + K T GV ++QEQVM++A L + Y+ EAD LRRAM Sbjct: 616 PYLRRRNGEEDVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G KNG A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDR 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++ A I A A +PF D R + L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRSFREEDALRIEVARAKRPFVDATDLTLRAE---LDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ + + +A +V+ +Q+ T Sbjct: 896 EDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|71735001|ref|YP_274870.1| error-prone DNA polymerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|123775093|sp|Q48IB1|DNAE2_PSE14 RecName: Full=Error-prone DNA polymerase gi|71555554|gb|AAZ34765.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329030|gb|EFW85029.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str. race 4] Length = 1031 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 269/1043 (25%), Positives = 458/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ + A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E ++GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L + Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD ETY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + +GY+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G KNG A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ ++ + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|300782746|ref|YP_003763037.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] gi|299792260|gb|ADJ42635.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] Length = 1103 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 282/1037 (27%), Positives = 473/1037 (45%), Gaps = 63/1037 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ A + AIA+TD + ++ + F++ A G+ + Sbjct: 61 YAELHCHSNFSFLDGASHPEELVEEAARLELDAIALTDHDGMYGVVRFAEAARELGVDTV 120 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129 G +L ++ Q P P ++LL +GY+ L ++ + Q K Sbjct: 121 FGTELSFGLRS-----PQNGVPDPEGEHLLLLARGDQGYRALCRAITAGQIHHQAEKGRP 175 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L + E ++LTG G + A + A ++L FG D +YV L Sbjct: 176 SYDLGAVAEEVAGQCVVLTGCRKGAVRSALVAHGPAAAAEKLKELVDRFGRDNVYVELTD 235 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D + QLA LP VAT + + E D L A+ + + + Sbjct: 236 HRQPLDSTHNDLLTQLAGELGLPTVATTAAHYARPERAPLADALAAIRARRGIDELEGWL 295 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM ++F P A+ + + C+F L++ AP LP F E Sbjct: 296 PAAGTAFLRSGAEMDALFRRYPGAVRRSALLGMECAFPLKLIAPELPPFDVPEG----YT 351 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E LR G E R H + ++++ EL +I + F GYFLIV D +++ Sbjct: 352 ETTYLRELTKEGAEERFQGKP-----HEEQAKEQIKHELAIIEELGFPGYFLIVWDIVRF 406 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++++I GRGS A S YAL IT +D + + LLFERFL PDR PD D+D DR Sbjct: 407 CREHDIL-CQGRGSAANSAVCYALGITKVDSVAYELLFERFLAPDRDGYPDIDLDIESDR 465 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+E I+YV K+G R+AQ+ + +A++A+RD RAL Q D K I + Sbjct: 466 REEAIQYVFEKHGRLRIAQVANVITYRARSAVRDAARALGYSPGQQDAWSKQIDRWGSLQ 525 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + D +L+++ LE RH H+ G+V+ P+SQ+VP+ Sbjct: 526 NTEK-----------DHDHDIPDEVLQLAFALEDFPRHLGIHSGGMVMCAEPVSQVVPVE 574 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +D V Q+ + AGL+KFD LGL L+ L +D +A+ + +VDL+ + D Sbjct: 575 WARMADRSVIQWEKEDCAAAGLVKFDLLGLGMLSALHYMIDLVAEYKDEQVDLAELDLAD 634 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 + Y +L +G+FQ+ES L +QP D+ V+L RPGPI ++ Y Sbjct: 635 EKIYDMLCRADAIGVFQVESRAQLATLPRLQPREFYDLAVEVALIRPGPIQGGSVHPYIR 694 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 RK G+E+ HPL++ L +T+GV ++QEQ+MQIA ++ ++ +EAD LR AM K+ Sbjct: 695 RKQGREEWTYDHPLLERALHKTKGVPLFQEQMMQIALDVANFTAAEADQLRHAMGSKRSD 754 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +MD ++RF+ GA+ NG+ +A IF L FA++GF +SHA ++A + + +A+ K + Sbjct: 755 RKMDLLRQRFLEGAAANGVDDELAQKIFLKLKAFANFGFPESHALSFAHLVFSSAYFKFY 814 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRI 835 +P FLA + + + DAR+ + + P +N + + + Sbjct: 815 HPDAFLAGLLRAQPMGFYSPQSLVADARRHGVTVHGPDINRSLPHATLEALPDKGKLHAV 874 Query: 836 YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L+ ++ +G A+ I+ A + + + D RV +L +E+L AGA F Sbjct: 875 RTGLSTVRKIGEDLAKRIVAERAENGDYRDMADVARRV---RLTTPQIEALATAGAFAGF 931 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G R Q L A V R + + + Sbjct: 932 GGDRRQALW-------TAGAVAGERPERLPGLVGS---------PAPVLPGMDGLDVAAA 975 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + G +P + + L ++G+ G + + V +Q+ T G Sbjct: 976 DVWATGVSPDSYPTEFIRDRLDELGVVPAGGLADLDDGARVLIGGAVTHRQRPATAGG-- 1033 Query: 1015 IGWVTFSEPAKEYEANF 1031 + ++ + Sbjct: 1034 VTFLNIEDETGMINVIC 1050 >gi|315504584|ref|YP_004083471.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5] gi|315411203|gb|ADU09320.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5] Length = 1116 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 288/1052 (27%), Positives = 462/1052 (43%), Gaps = 81/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA + ++ A A+A+TD + + + F++ A A + I Sbjct: 66 YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P +++L EGY RL +SR L K Sbjct: 126 FGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRPV 180 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L + +++LTG G + A A + L LFG + + V L Sbjct: 181 YGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 240 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + LA LP VATNN + + + AV + + D Sbjct: 241 HGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGWL 300 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM + F+ P A+ E +F LQ+ AP LP + Sbjct: 301 PAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----HT 356 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR + G R H + Y +L+ EL +I + F GYFL+V D + + Sbjct: 357 EMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVAF 411 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + +I GRGS A S YAL IT++D +R LLFERFL P+R PD D+D DR Sbjct: 412 CRAQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 470 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI++V +YG E AQ+ S + ++A+RDV +A Q D K I + Sbjct: 471 REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 529 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A ++++ + +L+ RH H+ G+VI DRP+ ++ P+ Sbjct: 530 -------------AAVDVADIPEQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPVE 576 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L+ L D + R +DL + DD Sbjct: 577 WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDDP 633 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 634 EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 693 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 KNG+E + HPL+ L++T GV ++QEQ+MQ+A L+G+ + AD LRRAM K+ E Sbjct: 694 KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSVE 753 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +R +G ++ GI+ +A +++ L FA YGF +SHA ++A + Y ++W+K ++ Sbjct: 754 RMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 813 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822 P FLAA + + + DAR+ +++ P +N Sbjct: 814 PGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVPG 873 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 P + +G + L +++ +G A I A P+ + D RV L Sbjct: 874 EPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLTAAQ 930 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE+L A A CFG +R Q ++ + G +D TL Sbjct: 931 LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTLP 978 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + R + G HP + L ++G G IR+ +V Sbjct: 979 GMAA---VDRLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGIV 1035 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++ + P Sbjct: 1036 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1065 >gi|302868946|ref|YP_003837583.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC 27029] gi|302571805|gb|ADL48007.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC 27029] Length = 1116 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 288/1052 (27%), Positives = 462/1052 (43%), Gaps = 81/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA + ++ A A+A+TD + + + F++ A A + I Sbjct: 66 YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P +++L EGY RL +SR L K Sbjct: 126 FGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRPV 180 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L + +++LTG G + A A + L LFG + + V L Sbjct: 181 YGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 240 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + LA LP VATNN + + + AV + + D Sbjct: 241 HGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGWL 300 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM + F+ P A+ E +F LQ+ AP LP + Sbjct: 301 PAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----HT 356 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR + G R H + Y +L+ EL +I + F GYFL+V D + + Sbjct: 357 EMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVAF 411 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 + +I GRGS A S YAL IT++D +R LLFERFL P+R PD D+D DR Sbjct: 412 CRAQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 470 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI++V +YG E AQ+ S + ++A+RDV +A Q D K I + Sbjct: 471 REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 529 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A ++++ + +L+ RH H+ G+VI DRP+ ++ P+ Sbjct: 530 -------------AAVDVADIPEQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPVE 576 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L+ L D + R +DL + DD Sbjct: 577 WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDDP 633 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 634 EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 693 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 KNG+E + HPL+ L++T GV ++QEQ+MQ+A L+G+ + AD LRRAM K+ E Sbjct: 694 KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSVE 753 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +R +G ++ GI+ +A +++ L FA YGF +SHA ++A + Y ++W+K ++ Sbjct: 754 RMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 813 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822 P FLAA + + + DAR+ +++ P +N Sbjct: 814 PGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVPG 873 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 P + +G + L +++ +G A I A P+ + D RV L Sbjct: 874 EPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLTAAQ 930 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE+L A A CFG +R Q ++ + G +D TL Sbjct: 931 LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTLP 978 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + R + G HP + L ++G G IR+ +V Sbjct: 979 GMAA---VDRLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGIV 1035 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++ + P Sbjct: 1036 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1065 >gi|188591403|ref|YP_001796002.1| Error-prone DNA polymerase [Cupriavidus taiwanensis] gi|170938798|emb|CAP63795.1| Error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424] Length = 1050 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 279/1038 (26%), Positives = 439/1038 (42%), Gaps = 64/1038 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA + ++ A A+AITD +L + +A AG++ Sbjct: 10 PDYAELHCLSNFSFLTGASRPEELAERAAQLGYHALAITDECSLAGIVRAHTEAKKAGMR 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++G + D S+V L EGY L EL++ + K S Sbjct: 70 LVVGASFHLQNADG-----------SPALSVVALARNREGYGNLCELITLARMRAA-KGS 117 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + L E + L L I + + + + F R ++ L Sbjct: 118 YVLTPRDLAAPEAPHQHLKGLPDCL--IIFTPDYGAPADRLDLQAAWVSATFAGRAWMGL 175 Query: 187 Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 +R D V A H L +VAT DVL A+ V + Sbjct: 176 NLLYRPLDDIHRGTVEAAAARHHLRVVATGCVTMHVRSRKPMLDVLTAIRVGRPV-PECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + L V IA C F L P + + Sbjct: 235 YDLAPNAEQHLRSRLRLANIYPHRYLTEAVHIANLCQFSLDELRYEYPDEVVPDG----T 290 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + AG R G +Q+++ EL ++ M + YFL V+D ++ Sbjct: 291 TPADYLRTETYAGAHRRFPAG------IPLAVQQQIEHELALVRDMDYERYFLTVSDIVR 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ N I GRGS A S Y L IT++DP R +LLFERF++ +R PD D+DF Sbjct: 345 FARSNGIL-CQGRGSAANSAICYCLGITEVDPARGNLLFERFISKERGEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG +R A + + ++ALRD G+AL + + VD + K Sbjct: 404 RREEVIQYLYRKYGRDRAALAAAVTTYRPRSALRDTGKALGVDPAIVDLVAKSHHWFDGK 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ A+ R ++ L G RH S H G V+ LS+LVP+ Sbjct: 464 ADLLKRFAES----GVDAEAELSQRWAHMAVSLLGFPRHLSQHTGGFVLARGKLSRLVPI 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 +D V Q++ ++ GL+K D L L L+ ++++LD + QRG +L IP + Sbjct: 520 ENAAMADRSVIQWDKDDLDALGLLKVDVLALGMLSAVRRALDLVAEQRGEAFELQDIPAE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 DH TY ++ T+G+FQ+ES L +QP D++ V++ RPGP+ +V+ Sbjct: 580 DHATYEMICRADTVGVFQIESRAQMSMLPRLQPRTFYDLVIEVAIVRPGPVQGGMVHPYL 639 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ G E + ++ L T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGFEPVTYPSAAMEKALSRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K +DK +R +SG + G + A +IF + F +YGF +SHAA++A++ Y +AW+K Sbjct: 700 KGGIDKYYDRIVSGMLERGYDREFAESIFRQIQGFGEYGFPESHAASFALLVYASAWLKC 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835 H P FL A + + + QDA++ + ++P V D + + Sbjct: 760 HEPEAFLCAMLNSQPMGFYTPSQLVQDAKRHGVTVLPADVAVSGWDSALEPFHAGSRPAV 819 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L+ ++G+ A+ I EA A +PF S + R L+R L+ L AL Sbjct: 820 RLGLSLLRGMRREAAQRIEEARAIRPFASTAELARRA---ALDRHDLQVLASGNALASIT 876 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q L + A E + + Sbjct: 877 GGRRQALWQAAAAVPDKDMLRATE-------LAEESA---------ELVPATEGEEIVGD 920 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 R +G HPL + +P+L E R A +V +Q+ T G + Sbjct: 921 YRAMGLTLRRHPLALLRPMLSARRFVSAAELAQYQPRQTARAAGLVTVRQRPSTSNG--V 978 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 979 IFMTLEDETGVVNVIVWP 996 >gi|330469312|ref|YP_004407055.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032] gi|328812283|gb|AEB46455.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032] Length = 1088 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 289/1052 (27%), Positives = 469/1052 (44%), Gaps = 81/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L H+++S L+GA ++++ A+A+TD + + + F++ A A + I Sbjct: 38 YAELHAHTNFSFLDGASHPEELVEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 97 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P +++L EGY RL ++R +L K Sbjct: 98 FGAELTLGLPG-----PQNGVPDPHGKHLLVLAHGHEGYARLATTIARAHLRGGEKGRPV 152 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L + + +++LTG G + A A + L LFG + + V L Sbjct: 153 YGELEEIAADLRDHVLVLTGCRKGHVPAALLTRGVDAAARELDRLTTLFGAETVAVELTD 212 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + +LA LP VAT N + + L AV + + D Sbjct: 213 HGHPIDGDRNDALAELATAAGLPTVATGNVHYATPGRRRLATTLAAVRARRSLDEMDGWL 272 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM + F+ P A+ E +F LQ+ AP LP + Sbjct: 273 PAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPQLPAYPVPPG----HT 328 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR AG R + H Q Y +LD ELN+I + F GYFL+V D +++ Sbjct: 329 EMSWLRQLTEAGARERYG----PREAHPQAY-AQLDHELNMIEALGFPGYFLVVYDIVEF 383 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++ +I GRGS A S YAL IT++D +R LLFERFL P+R PD D+D DR Sbjct: 384 CRRADIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 442 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI++V +YG E AQ+ S + ++A+RDV +A Q D K I Sbjct: 443 REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGDV- 501 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A ++++ + +++ RH H+ G+VI DRP+ ++ P+ Sbjct: 502 -------------AAVDVPEIPEQVIAYANEVQTFPRHLGIHSGGMVICDRPVIEVCPVE 548 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L+ L D + G+ +DL DD Sbjct: 549 WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMI---GMSLDLGEETLDDP 605 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 606 EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 665 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 KNG+E + HPL+ L++T GV ++QEQ+MQ+A L+G+ +EAD LRRAM K+ E Sbjct: 666 KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSVE 725 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +R +G ++ GI+ +A +++ L FA YGF +SHA ++A + Y ++W+K ++ Sbjct: 726 RMARIADRLYAGMAQRGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 785 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822 P FLAA ++ + + DAR+ +Q+ P VN Sbjct: 786 PGPFLAALLSAQPMGFYSPQTLVDDARRHGVQVRRPDVNASGVKPVLESTAETRWGSQPG 845 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 P + +G + L+ ++ +G A+ I+ A P+ + D RV L Sbjct: 846 EPPHAWGLGGPAVRLGLSGVRTLGEPVAQRIVAERSAHGPYRDMPDLARRV---GLTAAQ 902 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE+L A A CFG +R Q ++ + + G + Sbjct: 903 LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPDRLPGTVTGAAA-----P 947 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + R + G HP +P L MG + G IR+ +V Sbjct: 948 TLPGMEAVDRLVADVWATGLSPENHPARFIRPQLEAMGAVPIDRLGRVEPGRRIRVGGIV 1007 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++ + P Sbjct: 1008 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1037 >gi|71907571|ref|YP_285158.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB] gi|123760519|sp|Q47EP3|DNAE2_DECAR RecName: Full=Error-prone DNA polymerase gi|71847192|gb|AAZ46688.1| error-prone DNA polymerase, DnaE-like protein [Dechloromonas aromatica RCB] Length = 1027 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 276/1032 (26%), Positives = 450/1032 (43%), Gaps = 69/1032 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA + + A A+A+TD +L + A G++ Sbjct: 4 PEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKHGLK 63 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ +V L GY L L++ + K Sbjct: 64 FIVGSEM----------------MTVDGLKLVFLACNRHGYGNLSALITLARRRAE-KGG 106 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + + L+ I G L + N+ A+ F R ++ ++ Sbjct: 107 YTLHRNDLESISPSG--ALPDCLVLWVP----GNNPSSAD--GEWLVSRFPGRSWIAVEL 158 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + + L LPLVAT + + DVL A+ + V + Sbjct: 159 HAGPEDAERLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYAL 218 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P+ RS + PE L T+ IA RC F+L P I + Sbjct: 219 F-PNGERHLRSRLRLSRLYPPELLAETLNIAARCEFLLDELRYEYPEEIIPSGE----TP 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR++ GL+ R G R+R++ EL +IA M + YFL V D + +A Sbjct: 274 ASWLRSETERGLQRRYPAGV------PGSVRERIEHELGLIAEMAYEAYFLTVYDIVCYA 327 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S YAL +T++DP R +LLFERF++ +R PD D+DF +RR Sbjct: 328 RSQDIL-CQGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPDIDVDFEHERR 386 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI+Y+ KYG ER A + + K ALRD GRAL +Q++ L + Sbjct: 387 EDVIQYIYTKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTASLAWWDKREQ 446 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + A+ P V++ L I++ L G RH + H G VI PLS+LVP+ Sbjct: 447 LPERFAE----LGLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVISRGPLSRLVPVEN 502 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 S V Q++ ++ GL+K D L L L+ +++ L + + + + IP +D Sbjct: 503 AAMSARSVIQWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTGRPMKMQDIPAEDP 562 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY +L ++G+FQ+ES L ++P D++ V+L RPGPI +V+ R Sbjct: 563 ATYEMLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPGPIQGDMVHPYLKR 622 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKE 723 + G+E+I I P +D +L+ T GV I+QEQVMQ+A + + ++ EAD LRRAM K Sbjct: 623 RQGRERIEEISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEADQLRRAMAAWKRKG 682 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 ++ +++ ++G + N + ++ A I + F +YGF +SHAA++A++ Y +AW+K H+ Sbjct: 683 GLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFALLVYASAWLKRHH 742 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842 P FL + + QDAR+ ++++PP V T D ++ + + L I Sbjct: 743 PAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRLDERGAVRLGLREI 802 Query: 843 KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 G A+ I ++PF ++ D +R L RR L+ L AL R Q Sbjct: 803 SGFSVAAAKRITAVCRENQPFLNVADLAARA---GLQRRDLDLLAAGDALQGLAGHRRQ- 858 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 ++F ++ + + + R LG Sbjct: 859 -----------AAWAATVAVVQGDLFDGTPVVEAEI----ELPAPSDGENLVADYRSLGL 903 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPL + + L + + IR +VV +Q+ T G I +VT Sbjct: 904 TLRSHPLSLLRQYLAERRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATG--IVFVTLE 961 Query: 1022 EPAKEYEANFFP 1033 + P Sbjct: 962 DETGLSNVVVHP 973 >gi|289629057|ref|ZP_06462011.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649726|ref|ZP_06481069.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867026|gb|EGH01735.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1031 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 267/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ + A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E ++GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKLWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G KNG A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ + + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|296114706|ref|ZP_06833357.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978740|gb|EFG85467.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC 23769] Length = 1057 Score = 599 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 278/1042 (26%), Positives = 459/1042 (44%), Gaps = 74/1042 (7%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 +P + LQ + +S L GA S + + A A+ I D N+L ++ A Sbjct: 3 PSAPRYAELQGTTYFSFLRGASSPIELFAQAKALGVEALGICDRNSLAGMVQAHVAAKEV 62 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++ ++GC+LD+ P +++ Y RL L++ G Sbjct: 63 GLRLVVGCRLDLAD----------------FPPVLVYPMDRAAYGRLCRLLTIGKAR-AG 105 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185 K + L G EG I++ + L K F DR ++ Sbjct: 106 KGKCHLLWEDLVAWG-EGQIVI----------MIPNTADDACGLHLRKLKDAFADRAFMA 154 Query: 186 LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L R D+ R ++ LA+ +P V TN+ LF + DV+ + H+T + + Sbjct: 155 LTLLRRPNDQMRLYELANLAHQARVPTVVTNDVLFHTHNRRILQDVVTCIRHNTTIDEAG 214 Query: 245 RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R D YLK EM +FS PEA+ T++I RC F L A E Sbjct: 215 FVRERHADRYLKPPQEMARLFSRYPEAVARTMDIVERCRFSLDDLAY----QYPDEVSVP 270 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + + L +G + Q L+ ELN+I RM+++ YFL V Sbjct: 271 GQTPQQALETLTWEAAARTYPEG------IPDEVCQSLNHELNLIGRMQYAPYFLTVNSI 324 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+ +I GRGS A S Y L IT IDP R SLLFERF++ +R PD D+DF Sbjct: 325 VHYARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFE 383 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 RR++VI++V YG +R A +AK ALRDVG+ + +P + L I Sbjct: 384 HARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQIHGW- 442 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + A+ D L+D + L++++ L G RH S H G V+ L +LV Sbjct: 443 GRKLDDDALNDT----GIDLSDRRIRLTLDLARCLIGAPRHLSQHPGGFVLTHDRLDELV 498 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ + +++ I+ +K D L L LT ++K LD L + L IP Sbjct: 499 PIEPASMEQRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLGEHKGQHFTLQSIP 558 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 559 GEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHP 618 Query: 663 --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 R+ G E+ P ++ +L +T G+ ++QEQ MQ+A + +G++ +EAD LRRAM Sbjct: 619 YLRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATF 678 Query: 721 -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + + + R I G NG + A I++ L F YGF +SHAA++A+++Y ++WM Sbjct: 679 KNTGTVSQFQTRLIEGMRANGYDEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWM 738 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------ 833 K +P FLA+ + + + +DAR+ ++I P VN D + Sbjct: 739 KCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGL 798 Query: 834 -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + ++ +KG+ A I+ A A +PF S++D R K L L A A Sbjct: 799 FAVRLGMSLVKGLANDDAARIVAARASRPFTSVDDLWRRAGVKA---AALTHLAEADAFR 855 Query: 893 -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 G +R + L ++ ++ +FA + T + Sbjct: 856 PSLGLARREALWAIKALRDE-----------PLPLFAAAQVTREAEEPDVLLQPMRDGAE 904 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + LG HPL + L++ GI +++ G + +A +V+ +Q+ + + Sbjct: 905 VVRDYNRLGLSLRDHPLAFLRKDLQEQGILPCRQALNAKDGKRLTVAGLVLVRQRPGSAE 964 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 965 G--VVFMTLEDETANMNVIIWP 984 >gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275] Length = 991 Score = 599 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 373/938 (39%), Positives = 541/938 (57%), Gaps = 30/938 (3%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + P+++ L++H+ +S+ +G + + ++ K PA+ I+D N F ++F + Sbjct: 1 MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123 AGI+PI + I +L++ GY RL EL++ Y+ D Sbjct: 60 AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 + + WL+ GLI L+G G + + A L + F D Y Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169 Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 + LQR R S V+LA LP+VAT+ + F+S +D+ AH+ + +A V++ Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229 Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 K RPR TP + M F+DLPEALENTVEIA+RC+ + + LP F + Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357 + ++ L + GL+ R+ Q + A +Y++RLDFELN+I +MKF GYF Sbjct: 290 LSL----DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV DFI WAK + PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 FD+DFCQ R VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+ D+L K Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465 Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 LIP + P+ A+ + + +E A D L+ +++KLE L R HA G++I Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595 +S P+Y+ S PV+ ++ +E GL+KFDFLGL+ LT+++ + + + Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584 Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655 VD+ IP DD Y + T +FQ ES+GM++ L+ E++IA VSLYRPGP+ Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 DNI + R G+ + IHPL++ +L T G+++YQEQVMQ AQ++ GYSL AD+LRR Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703 Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 AMGKK EEM K +E F GA+K GIS+ + IF + KFA YGFNKSHAAAYA+ISYQ Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834 TAW+K HYP EF+AA+M+ E+DN +++K F D R I+ +PP +N F N + Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823 Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 I Y+L AIKG G I+ A F L +FC RV + +NRR LE+L+ GA D Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGGAFDS 883 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 +R LL ++D A +K +F H+ Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFRHDG 919 >gi|87307671|ref|ZP_01089815.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] gi|87289841|gb|EAQ81731.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645] Length = 1033 Score = 599 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 282/1028 (27%), Positives = 465/1028 (45%), Gaps = 65/1028 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + L +++S LE A ++ + A+AITD ++L + + A G++ Sbjct: 9 RYAELYCRTNFSFLEAASHPEELVARAQELDYAALAITDFSSLAGVVRANTAAKECGLKI 68 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG ++ +VL GY L L++ K Sbjct: 69 LIGVEIT----------------PTDGWPVVLWAKNRAGYANLCRLITTGRRR-APKGEC 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 ++ ++ + L+ G + A NS Q + + + ++++FG Y+ Q Sbjct: 112 QLTVADIAA-HAAHLLC------GVVSPA---NSEQFSPQGVGRYREIFGAGGYLLAQLQ 161 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247 RG D R + L+ LPLVA LF + + HDVL A+ H T V+Q + Sbjct: 162 RGPHDHDRVDCLQTLSQQTRLPLVAAGGVLFHTPKRKPLHDVLTAIRHHTTVAQAGPYLQ 221 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L+ R + +F+ LP A+E TVEIA +C+F L P + Sbjct: 222 TNAERHLRERDVIARLFAGLPHAVERTVEIADQCTFSLDELRYEYPEELAPPGM----TP 277 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G +R G R+ L EL +I +++ YFL V D +++A Sbjct: 278 IEYLRQLTWQGAAMRYP------GELPTKIRELLQHELTLIEELRYEPYFLTVWDLVRFA 331 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S Y L +T +DP R ++LFERF++ +R PD D+DF +RR Sbjct: 332 RTRDIL-CQGRGSAANSAVCYCLGVTAVDPGRVNVLFERFISRERDEAPDIDVDFEHERR 390 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++Y+ KYG ER + + ++A+RDVG+AL + VDRL K + A Sbjct: 391 EEVLQYLYEKYGRERAGMTAVTITYRPRSAIRDVGKALGLSLDLVDRLAKNADHYRAPTD 450 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + L + Q+L G RH S H G+VI PL LVP+ Sbjct: 451 FQVRCRE----AGLDGRSSVGRQFLYLVQQLIGFPRHLSQHTGGMVITRGPLHDLVPIEN 506 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606 V ++N ++ G++K D L L LT ++K + Q + L+ IP D Sbjct: 507 AAMPGRTVVEWNKDDLDDLGILKVDCLALGMLTAIRKCFALIEQTTGQLHTLASIPEGDE 566 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 + Y ++ T+G+FQ+ES L +QP C D++ V++ RPGPI +V+ R Sbjct: 567 QVYEMICQADTIGVFQIESRAQMSMLPRLQPRCYYDLVIEVAIVRPGPIQGDMVHPYLRR 626 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 ++G+E+ + I +L++T GV ++QEQ MQ+A + +G++ EAD LRRAMG + Sbjct: 627 RSGEEEATYPNDAIQGVLEKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAMGAWRRPG 686 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +D+ + + + G +NG+S A +F + F +YGF +SHAA++A++ Y +AW+K HY Sbjct: 687 VIDQFRIKLLEGMQRNGLSGDFAERVFLQIRGFGEYGFPESHAASFALLVYVSAWLKCHY 746 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843 P EF AA + + + QDAR+ ++ I P VN D + + L I Sbjct: 747 PAEFAAAIINSQPMGFYAPAQLIQDARKHDVAIRPIEVNNSDWDCTIETGALRLGLRMIG 806 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+ A+ IM A D F SL DF R L + + L A AL +R L Sbjct: 807 GLQQAAAQAIMTARRDGRFHSLSDFAKRT---ALPQSQILPLAEADALSSMNPTRRDALW 863 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 ++ + + + + +F + + L + R G Sbjct: 864 NVLGV---------DAPTRQKTLFDDLEPDAEPPVWLP---AMLPEEEVHADYRTTGLSL 911 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPL ++ L +G+ A +++A +V+ +Q+ T KG I +VT + Sbjct: 912 RAHPLSFHRERLTMLGVTSAAALAAIANNAAVKVAGIVLLRQRPSTAKG--ITFVTLEDE 969 Query: 1024 AKEYEANF 1031 Sbjct: 970 TGVANLVI 977 >gi|312961389|ref|ZP_07775894.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6] gi|311285047|gb|EFQ63623.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6] Length = 1030 Score = 599 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 281/1033 (27%), Positives = 447/1033 (43%), Gaps = 76/1033 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ L S+++ GA S + ++ A+AITD L + Q A A + Sbjct: 9 SYAELPCLSNFTFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVDLPL 68 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ I+ P +VLLV GYQ L L++ Q K S Sbjct: 69 IIGSEVRIENG----------------PKLVLLVQDLSGYQHLCRLITLARRRAQ-KGSY 111 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ + GL+ L + ++ F +RL++ + H Sbjct: 112 RLLHDDFAQPLP-GLLALWVAEDSDTQTSI------------QWLRQTFAERLWLAVHLH 158 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D Q ++LA + +P VA + + D + A+ H V++ R+ Sbjct: 159 CGQDDARHLQQRLRLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 P+ RS L+ T IARRC+F L PR + E D Sbjct: 218 HPNGERHLRSLDALRALYPQALLDETQRIARRCTFDLGQLRYHYPRELVPEGHD----AA 273 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR G+ R +G A Q+++ EL +I R+ + YFL V D +++A+ Sbjct: 274 SWLRTVTEEGIAQRWPEGIDA------KTLQQINHELALIGRLGYESYFLTVHDIVRFAR 327 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S +AL IT+I+P ++LFERFL+ +R PD D+DF +RR+ Sbjct: 328 SRSIL-CQGRGSAANSAVCFALGITEINPSLTNMLFERFLSEERNEPPDIDVDFEHERRE 386 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV++YV +YG R A S A A+RDV +AL +P Q++ L Sbjct: 387 EVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDDAPP 446 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 L+ + R P + R+L ++Q+L G RH S H G VI + PL LVP+ Sbjct: 447 LERL----REAGFDPDSPLLRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENA 502 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ +++ D R + + L+ IP +D Sbjct: 503 AMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNLDLALATIPKEDPA 562 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R+ Sbjct: 563 TYAMISKADTIGVFQIESRAQMSMLPRLKPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRR 622 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N +EK P + +L+ T G+ ++QEQVMQIA + + YS EAD LRR+M + Sbjct: 623 NKEEKTTYPSPQLKTVLERTLGIPLFQEQVMQIAMVAADYSPGEADQLRRSMAAWKRHGG 682 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +ER +G NG ++ A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 683 LEPHQERLRTGMLNNGYTEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 742 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839 F A + + QDAR+ +QI P V D + I L Sbjct: 743 AAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGQQPAIRLGL 802 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 I G R + A F + D R L+ R L AGAL +R Sbjct: 803 RMISGFREEDGRRLEAARRRGVFRDIADLDQRA---GLDARAQALLADAGALRALAGNRH 859 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 Q + + +FA G + L + + Sbjct: 860 QARWEVAGVHT------------QLGLFAGLPGPDEAVVALP---TPTVGEDLHADYATV 904 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G HPL + + LRK + E +A G N+ + +V +Q+ T G + +VT Sbjct: 905 GTTLGPHPLALLRDELRKRRCRSSRELMAVEHGRNVSVVGLVTGRQRPGTASG--VTFVT 962 Query: 1020 FSEPAKEYEANFF 1032 + + Sbjct: 963 LEDEFGNLNVVVW 975 >gi|183981180|ref|YP_001849471.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M] gi|183174506|gb|ACC39616.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M] Length = 1100 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 282/1038 (27%), Positives = 490/1038 (47%), Gaps = 59/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD N L+ A+ F++ A G Sbjct: 60 SSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASGLG 119 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + + P P P +++L EGY+RL ++ +L K Sbjct: 120 VRTVFGAELSLGPE------ARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A AE+ L F R+ V Sbjct: 174 GKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERALADLVDRFTAGRVSVE 233 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D + + LA + +VAT + F + A+ + Sbjct: 234 LTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDSAA 293 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ +EM +F+ P+ + E+ +C+F L + AP LP F + Sbjct: 294 GWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 350 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ ++G R G+ + A+ +++ EL VIA++ F GYFL+V D Sbjct: 351 -HTEDSWLRSLVMSGARERY--GSTERSPRARKAYTQIEHELKVIAQLSFPGYFLVVHDI 407 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 Q+ ++N+I GRGS A S YAL +T +DP+ LLFERFL+P+R PD DID Sbjct: 408 TQFCRRNDIL-CQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDIDIE 466 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV NKYG + AQ+ + + ++A+RD+ RAL Q D K I + Sbjct: 467 SDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGHWN 526 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 A P ++ I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 527 ATPDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRPIADVC 571 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ +D V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 572 PVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLARLD 631 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 632 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 691 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R+NG + +V HP ++ L++T GV ++QEQ+MQ+A +G+S +EAD LRRA+ K Sbjct: 692 YIRRRNGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIGSK 751 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + ++W Sbjct: 752 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSSW 811 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + ++ Sbjct: 812 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQVR 871 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ + PF SL + SRV +L+ E+L AGAL CFG Sbjct: 872 LGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATAGALGCFG 928 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + ++ Sbjct: 929 MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPTLPGMSELELAASD 973 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L +G+ ++ G + +A V +Q+ T +G + Sbjct: 974 VWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATAQG--V 1031 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1032 TFINLEDETGMVNVLCTP 1049 >gi|312869124|ref|ZP_07729298.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3] gi|311095370|gb|EFQ53640.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3] Length = 1113 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 334/1028 (32%), Positives = 537/1028 (52%), Gaps = 50/1028 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L+VHSSYSLL+ + +++ A+A+TD N L+ A++F A AGI+P+ Sbjct: 3 YVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDQNILYGAVDFYNTARQAGIKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ + + + + + LL +GY+ L+++ +R ++GK Sbjct: 63 LGLEITVALDE----------LAGSQLKMTLLAKNEQGYRNLMDISTRQQTAERGK---T 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L + E +++L P+ A N + L + ++ G LY+ + + Sbjct: 110 ITFTELAGLLKEVVVIL------PVQLAVL-NLIRQGTGWLTSLQQTVGRNLYLGI--NL 160 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 D S + + A +P+VAT +L+ D A L A+ ++ D Sbjct: 161 QLDEVERSSLQRFAQEAGVPIVATTPVDYLNATDLFATKTLQAIGQGAQLTDLDAQATAT 220 Query: 251 DHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + V A++NT IA +C+ L+ AP+LP + + Sbjct: 221 GDNYLPVRQQVEAAYHQLGLAAAVDNTAVIADQCNVELKFQAPVLPHYQTPHGE----TA 276 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR +AGL+ R +A GY A YRQRLD EL +I RM F YFLIV D + +A Sbjct: 277 VDYLRQLCLAGLKKR----PLAAGYSATAYRQRLDHELAIIHRMGFDDYFLIVWDVMNFA 332 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R MPD D+D +RR Sbjct: 333 HRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNRR 392 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV+ YV KYGHERVAQIITFG+L AK LRDV R ++ + L +P + + Sbjct: 393 EEVLAYVHRKYGHERVAQIITFGTLAAKQVLRDVSRVFKLTKFETTTLLDALPRGGSFTL 452 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA+A+ R + P + +L +++++LEGL RH STHAAGIV+ PL ++VP+ Sbjct: 453 D-QALAESQRLKNLLNDQPKLRQLFQVARQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ- 510 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 L +TQF +E GL+K DFLGL+ L+++ +L + Q+ + L + D Sbjct: 511 AGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTLRMIRQQEPQFSLERVSLADPA 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T G+FQ ES+G+R L + PD EDI+A+ +LYRPGP++NI + RK G Sbjct: 571 TLQLFQRGQTDGVFQFESAGIRNVLTALHPDHFEDIVAVNALYRPGPLENISHFIARKQG 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E + + P+L T G+++YQEQVMQ+A ++G++L EAD+LRRAM KK K+ MD Sbjct: 631 QEPVRLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMDN 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + +F++GA G +A +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP EF Sbjct: 691 MRAKFMAGARAKGYQSALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTEF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A + E + + + A++ ++I P +N F V D +IY+ L AIKG Sbjct: 751 YTALLNAEGNITKLRQHVTN-AQRMGVKINGPRINLSRAQFTVHDQQIYFGLTAIKGGRR 809 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 +++ ++ F + D R+ K VL L++AGALD GY+R ++++SL Sbjct: 810 DFIADLLQERDSNGSFKDIRDLIHRLPDKWQKEEVLTPLIYAGALDGLGYNRAEMIESLP 869 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 N+ + + G S + ++ + R E +LG Y SGH Sbjct: 870 NLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSGH 920 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025 P+ Y+ + ++ + + L + + T+K + +++ S+ + Sbjct: 921 PVSQYRQLASRLRAGRVADL---RPNQRVTLILFINRVKVIHTKKDHRPMAFISGSDESG 977 Query: 1026 EYEANFFP 1033 + FP Sbjct: 978 LLDVTVFP 985 >gi|330503437|ref|YP_004380306.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01] gi|328917723|gb|AEB58554.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01] Length = 1022 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 270/1034 (26%), Positives = 462/1034 (44%), Gaps = 78/1034 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 + L S+++ GA S + ++ A A+AITD L + + + G++ Sbjct: 2 SDYAELHCLSNFTFQRGASSAQELFERAARLGYRALAITDECTLAGIVRAWEASKKTGVK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ I+ P +VLL EGYQ L L++R K + Sbjct: 62 LIVGSEVQIE----------------KGPKLVLLAENLEGYQALCGLITRARRRAA-KGT 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + +GL+ + S+ L + +F +RL++ ++ Sbjct: 105 YRLLHEDFV-VPLDGLLAIW--------------LSEGEATALPWLRSVFPERLWLGVEL 149 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HRG D R ++++LA H+LP VA + + D + A+ H V++ Sbjct: 150 HRGADDSARLQRLLELAAVHDLPTVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGAHL 209 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + R PE L ++ IA RCSF L P + D Sbjct: 210 F-ANGERHLRRLEELGELYPPELLAQSLRIAERCSFDLDELEYHYPHELVPAGHD----P 264 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR G R +G A R +++ EL +IA +++ YFL V D +++A Sbjct: 265 TSWLRVLVERGAAERWREGVPAAA------RTQIEHELALIAELEYESYFLTVHDIVRFA 318 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ +I GRGS A S +AL IT++DP LLFERFL+ +R PD D+DF +RR Sbjct: 319 REQHIL-CQGRGSAANSSVCFALGITELDPTESRLLFERFLSRERNEPPDIDVDFEHERR 377 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV +YG R A + A+RDV +AL +P QV+ L + P Sbjct: 378 EEVIQYVFRRYGRTRAALTAVVNTYHGAGAIRDVAKALGLPPDQVNALADCCGRWSSGPP 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + + +P + R+L ++ +L G RH S H G VI + L LVP+ Sbjct: 438 TPERLLE----AGFDPQNPLLRRVLILTGELIGFPRHLSQHPGGFVISEHALDTLVPVEN 493 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 ++ V Q++ +++ GL+K D L L L+ L++ + + RG + L+ +P +D Sbjct: 494 ATMTERTVIQWDKDDLDRVGLLKVDVLALGMLSALRRCFGLIERYRGTQWTLATLPKEDP 553 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY +++ T+G FQ+ES L ++P+ D++ V++ RPGPI +V+ R Sbjct: 554 ATYAMISRADTIGAFQIESRAQMAMLPRLRPNTFYDLVIQVAIVRPGPIQGDMVHPYLRR 613 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724 +N +E I + P+ + T GV ++QEQVM++A + + Y+ EAD LRR+M + Sbjct: 614 RNEEEAIDYPSDELKPVFERTLGVPLFQEQVMELAIVAAEYTPGEADELRRSMAAWKRHG 673 Query: 725 M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + ++R S + G ++ IF + F YGF +SHAA++A+++Y + W+K H Sbjct: 674 GLEPHRQRLTSRMLEKGYTQEFTERIFRQIEGFGSYGFPESHAASFALLAYASCWLKCHE 733 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYS 838 P + A + + QDAR+ ++++ P V D + N I Sbjct: 734 PAAYACALVNSWPMGFYSPDQVLQDARRHDVEVRPVDVRYSDWDCSLEPNEHGEPAIRLG 793 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L I+G+ AR I +A F +ED R +L+ E L AGAL R Sbjct: 794 LRMIRGMREDDARRIEQARQSGSFRDVEDLSVRA---RLDASARERLADAGALAGLAGHR 850 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q ++ +++ +FA ++L + + Sbjct: 851 HQARWAVAGVEE------------QLPLFAGVSAPNEASLSLP---APSQGEDLLTDYAT 895 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 LG HPL + + +LR + E A G + +A +V+ +Q+ +T G + +V Sbjct: 896 LGTTLGPHPLALLRQVLRARRCRSSHELQAVEHGRPVSVAGLVIGRQRPQTASG--VIFV 953 Query: 1019 TFSEPAKEYEANFF 1032 T + + Sbjct: 954 TLEDEFGLVNVVVW 967 >gi|28869981|ref|NP_792600.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|71151834|sp|Q881T7|DNAE2_PSESM RecName: Full=Error-prone DNA polymerase gi|28853226|gb|AAO56295.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 1031 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 264/1037 (25%), Positives = 447/1037 (43%), Gaps = 80/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + D+ A+AITD L + Q + G+ I Sbjct: 5 YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ P IVLLV GYQ L L++ + K R Sbjct: 65 VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + L + G + ++ F +RL++ ++ HR Sbjct: 108 LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248 G D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + +L++ + + D A ++ IARRC+F P + + + Sbjct: 219 NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLQYEYPHELVPKG----QTST 272 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR G+ R +G R +++ EL +I KF YFL V D +++A+ Sbjct: 273 SWLRELTERGIRRRWPRGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF DRR+ Sbjct: 327 SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ +YG R A + ALRDV + L +P Q++ L S Sbjct: 386 EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + P + R+L ++ +L G RH S H G VI + PL LVP+ Sbjct: 446 PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ +P DD Sbjct: 502 AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ R+ Sbjct: 562 TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N +E I P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 622 NKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 D +ER +G NG A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 681 LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835 F A + + QDAR+ +I+I P V D + + I Sbjct: 741 AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNLAI 800 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++ A I A + +PF D R L+ R E+L +GAL Sbjct: 801 RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + +F + + + Sbjct: 858 GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 LG HPL + + L + ++ ++ + +A +V+ +Q+ T G + Sbjct: 902 YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENNRTLSVAGLVIGRQRPGTASG--V 959 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 960 TFVTLEDEFGMVNVVVW 976 >gi|330985361|gb|EGH83464.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1031 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 265/1043 (25%), Positives = 453/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ + A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E +GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSPDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G N A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ ++ + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|239946850|ref|ZP_04698603.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of Ixodes scapularis] gi|239921126|gb|EER21150.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of Ixodes scapularis] Length = 1245 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 407/1133 (35%), Positives = 603/1133 (53%), Gaps = 119/1133 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P F+HL+ SSYS LE AL++ +++ ++++ AI + D NLF +LEF+ A G+Q Sbjct: 3 PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62 Query: 69 PIIGCQLDIDM----------QDNLKMTNQGKT--------------------PFPTVPS 98 PI G L+I QD K +T Sbjct: 63 PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122 Query: 99 IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158 I+L+ GY+ L++L S + + K I L E EGLI L + G + + Sbjct: 123 ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEY-QEGLIALCCYTDGIVGKC 181 Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNS 217 + + A +++ GDR Y + RH + E +++A +PLVATN Sbjct: 182 LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241 Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277 LF + ++AHDVL+ ++ DR V+ + Y ++ EM+ +FSDLP A++NTV + Sbjct: 242 LFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLPSAIQNTVNL 301 Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG-------LEVRLAQGAIAK 330 RC A + E + +R A G + Sbjct: 302 RERCY-----FAAHANPPMLPNFATKDISETDLIRKDAKEGLLARLATKFKSENISLENQ 356 Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390 +Y RL++EL++I M F+GYFLIV+DFI+W+KK I VGPGRGSGAGSV A++L Sbjct: 357 EELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSL 416 Query: 391 TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450 ITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI YV++KYG RV QIITFG Sbjct: 417 LITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFG 476 Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLAD---- 505 +QAKA ++DV R L +PY D L +L+P +PVS QAI + A + Sbjct: 477 KMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYN 536 Query: 506 -----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560 + +L+ S LEGL+RH+STHAAGIVI L +VP+Y+D SD+ V ++M Sbjct: 537 LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596 Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620 K+ E AGLIKFDFLGL+TLT++ L ++G++VD + + FDD++TY +L +G+ Sbjct: 597 KYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGV 656 Query: 621 FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680 FQ ES GM+ AL ++PD I D+IAL +LYRPGP++NI Y K+ ++ +H L+ P Sbjct: 657 FQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKP 716 Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740 +L+ET GV+IYQEQV +IAQ+L+GY+L AD+LRRAMGKKIK+EM++Q+E F+ GA N Sbjct: 717 ILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 776 Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800 IS++ A +IF +AKFA YGFNK+HAAAY VISYQTA++K +YP EFL A + LE++N + Sbjct: 777 ISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHD 836 Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRI----------------------- 835 KI F Q+A+ I+I+ P++N F V D I Sbjct: 837 KINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGSLCHPRESGDPEK 896 Query: 836 --------------YYSLAAIKGVGTTTAR-HIM-------------------EASADKP 861 + I+G+G I+ E A Sbjct: 897 LETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFGKLVTDERKARGM 956 Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921 F S+ DF R+ K +N ++LE+L+ +G D +R+QL S+ + Y+ + + + Sbjct: 957 FKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLSYSTSYHEEQGS 1016 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 ++ K + L + + E +G + S HPL Y+ I ++ I Sbjct: 1017 NQFSL---IKVSTLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLMQYQEIFSRLNIL 1073 Query: 982 GYEESV-ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + G + LA ++ K + + +G R + S+P +E + F Sbjct: 1074 NTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1125 >gi|331008498|gb|EGH88554.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1031 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 267/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E +GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSPDGLLAIWLPE--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L Sbjct: 380 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPPPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + +GY+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G KNG A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ ++ + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|88705720|ref|ZP_01103430.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71] gi|88700233|gb|EAQ97342.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71] Length = 1036 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 281/1037 (27%), Positives = 449/1037 (43%), Gaps = 71/1037 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S YS L GA ++ + AA IAITD +L ++ A G+ I Sbjct: 3 YCELHCLSCYSFLRGASRPEELVAQAAAKGYSGIAITDECSLAGVVKAHVAAKEHGLSLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + ++ L T Y L L+S K Sbjct: 63 IGSEFTLT----------------EGIRLLALAPTRAAYGELSGLISLARRRS-PKGEYE 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + LI+ S +L +R+++ + Sbjct: 106 VTLRDVIFHLKRCLIV-----------WLPREDSDANRGYGRQLARLCRERVWIGVHYLL 154 Query: 191 GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D R + +Q LA +LPLVA + HDV+ A+ H+ V+ R R+ Sbjct: 155 GNDELRRYRALQTLATHLQLPLVACGDVRMHCATRKPLHDVMTALHHNCSVAALGRRRLP 214 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 RS E L T+ I RRC F L P+ + + + Sbjct: 215 NA-QQHLRSVKQLERFYPNELLTETLNILRRCHFSLDELRYEYPKEVVPDG----HNARD 269 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G R G R+R++ EL +IA + + YFL V D +++A+ Sbjct: 270 YLRELTWQGASQRWPDG------TPTAIRERIEKELALIAELDYEYYFLTVYDIVRFARG 323 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A SV Y L IT++ P + SLLFERF++ +R PD D+DF +RR+E Sbjct: 324 RGIL-CQGRGSAANSVVCYCLLITEVSPEKVSLLFERFISRERDEPPDIDVDFEHERREE 382 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KY R A T + +A++A+RDVG+AL + VD L K + Sbjct: 383 VIQYIYEKYSRRRAALAATVITYRARSAVRDVGKALGLDPLFVDDLAKSLAWWDKQRDLE 442 Query: 490 QAIADDSRFREARLADPSVDRLLEI-SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + +P++ RL Q++ G RH S H G VI P+SQLVP+ Sbjct: 443 ARFSEHGLQTDNDDGEPNIARLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPVENA 502 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHE 607 +D V Q++ IE GL+K D L L L+ ++KSL + + ++ L IP +D Sbjct: 503 SMADRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLALVNRYDPRIRTLQDIPVEDVA 562 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +L ++G+FQ+ES L ++P C D++ +++ RPGPI +V+ R+ Sbjct: 563 TYRMLQKADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 622 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E I + +L+ T GV I+QEQV+++A + +G+S EAD LRRA+ + Sbjct: 623 QGLEDISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAITNWGRNSK 682 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +++ G + G S+ A +F+ + F YGF +SH+A++A+++Y ++W+K H+P Sbjct: 683 LLTFEKKLTEGMLRRGYSEDYARRLFDQIKGFGGYGFPESHSASFALLAYVSSWLKCHHP 742 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYY 837 F + + + QDAR+ ++ +PP VN D ++ D+ I Sbjct: 743 SAFYVGLLNSQPMGFYSPSQLIQDARRHDVVALPPDVNHSDWDHQLLDDGQQGTRAPIRL 802 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L IKG+ AR I A D P+ + D R LNR+ +E+LV A AL Sbjct: 803 GLRLIKGLSRDAARRISMARRDTPYRQIADLRKRA---ALNRKDMEALVDADALSSLSGH 859 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQ 956 R Q + + + AHE T + E + + Sbjct: 860 RHQARWQVMAL------------EPERPLLAHEHYTAGPSPSDEISLPEPAVAESVIADY 907 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R G HPL + + K + G +R+A +V +Q+ T G + Sbjct: 908 RSTGVTLRAHPLALLRSETPFNQCKCQRDLELMDDGRFVRIAGLVTCRQRPGTASG--VL 965 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 966 FLTLEDETGNNNVVVWP 982 >gi|237733766|ref|ZP_04564247.1| DNA polymerase III dnaE [Mollicutes bacterium D7] gi|229383104|gb|EEO33195.1| DNA polymerase III dnaE [Coprobacillus sp. D7] Length = 977 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 353/1023 (34%), Positives = 548/1023 (53%), Gaps = 52/1023 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+SSYS + + +++ K + A+A+TD +N++ A+E ++ A GI+ + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + ++LL GY L+++ S + L ++G I Sbjct: 64 LEASVEINHEI-------------YPLLLLARDVTGYFDLVKITSEICLSERG----AIS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 L L E L +++ G I+R A K L FK F + YV LQ H Sbjct: 107 LEALSLY-REHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + ++V LA +P+ TN +L++++ D+L A A D Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKG---MMLDLEHQVQT 221 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 L +S + +ENT +I R C+ + LP++ + D + L Sbjct: 222 DQLYLKSSFEMESLFDKKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 R + GL+ R I +Y +RL EL VI +M F+ YFLIV D++++AK + Sbjct: 278 RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF DRRDEV+ Sbjct: 333 ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490 YV KYGHE VAQI+TF + K A++D+G+ L +P +++ L K IP + + S + Sbjct: 393 NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 F+ DP++ +++ +E L R+ STHAAG+V+ + L Q+VP+ R Sbjct: 453 VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 + VTQ++ +IE+ GL+K DFLGLK LT++ + D V+++++ I D +TY Sbjct: 513 NG-VVTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 +++ T GIFQLESSGM+ L MQ DC++D+IA ++L+RPGP+ NI Y RK GKE Sbjct: 572 EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 I + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK M K Sbjct: 632 PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 FI G NG S+ AV +FEL+ +FA+YGFNKSH+ Y I+Y A++K ++P+EF + Sbjct: 692 SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ E + Q+ +++ ++++ PS+N FKV D I YSL AIK VG Sbjct: 752 ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I + F + DF SR++S KLN ++L+SL+ AGA D F +R + Q+L I Sbjct: 812 YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA+ D+ + +N E E+ VLG Y + HP+ Sbjct: 872 EYAELKN---------------SIGIDEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + K L++ I E I +R+ + + +KG + +V + E +A Sbjct: 917 LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974 Query: 1030 NFF 1032 F Sbjct: 975 VVF 977 >gi|296115453|ref|ZP_06834087.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978026|gb|EFG84770.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC 23769] Length = 1058 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 281/1039 (27%), Positives = 465/1039 (44%), Gaps = 74/1039 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + LQV + +S L GA S + ++ A A++I D N+L ++ A A G++ Sbjct: 6 PCYAELQVTTYFSFLRGASSPIELFEQAKALGIEALSICDRNSLAGMVQAYGAAKATGVR 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC++D+ P++++ + Y RL L++ GK Sbjct: 66 LVVGCRIDLAD----------------FPAVLVYPTDRAAYGRLCRLLTIGKAR-AGKGK 108 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 + L G EGLI++ + L K F DR Y+ L Sbjct: 109 CHLLWEDLVAWG-EGLIIV----------MVPDTADDACALHLRKLKDAFADRAYMALTL 157 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ R ++ LA +P V TN+ LF + + DV+ + H+T + + R Sbjct: 158 LRRPNDQMRLYELANLAQQAHVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFVR 217 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK EM +FS PEA+ TV+I RC F L A E + Sbjct: 218 ERHADRYLKPPQEMARLFSRYPEAVARTVQIVERCHFSLDDLAY----QYPDEVSVPGQT 273 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L +G + R+ L+ EL +I RM ++ YFL V +++ Sbjct: 274 PQQALEALTWEAAARTYPEG------IPDEVRKSLNHELGLIGRMAYAPYFLTVNSIVRY 327 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I GRGS A S Y L IT IDP R SLLFERF++ +R PD D+DF R Sbjct: 328 ARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHAR 386 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R++VI++V YG +R A +AK ALRDVG+ + +P + L I Sbjct: 387 REQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQIHGW-GRT 445 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + A+ D L+D + L++++ L G RH S H G V+ L +LVP+ Sbjct: 446 LDDDALTDS----GIDLSDRRIRLTLDLARCLIGTPRHLSQHPGGFVLTHDRLDELVPIE 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 + +++ I+ +K D L L LT ++K LD LA+ L +P +D Sbjct: 502 PASMEARQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAED 561 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 562 PRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 621 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722 R+ G E P ++ +LK+T G+ ++QEQ MQ+A + +G++ +EAD LRRAM Sbjct: 622 RREGIEPEDYPTPELEKVLKKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATFKNT 681 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + + R I+G NG + A I+ L F YGF +SHAA++A+++Y ++WMK Sbjct: 682 GTVSQFQTRLINGMRANGYDEEFAERIYLQLEGFGSYGFPESHAASFAILAYSSSWMKCT 741 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835 +P FLA+ + + + +DAR+ ++I P VN D + + Sbjct: 742 HPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGMFAV 801 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894 ++ +KG+ A I+ A +PF S++D R K L L A A Sbjct: 802 RLGMSLVKGLANDDAARIVAARDSRPFTSIDDLWRRAGVKA---AALTHLAEADAFRPSL 858 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G +R + L ++ ++ +FA + T + Sbjct: 859 GLARREALWAIRVLRDE-----------PLPLFAAAQITREAEEPDVLLQPMRDGAEVVR 907 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + LG HPL + L++ I +++A G + +A +V+ +Q+ + +G Sbjct: 908 DYNRLGLTLRDHPLTFLREDLQERDIMSCRQALAAKDGKRLTVAGLVLVRQRPGSAEG-- 965 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T + +P Sbjct: 966 VVFMTLEDETANMNVIIWP 984 >gi|330891559|gb|EGH24220.1| error-prone DNA polymerase [Pseudomonas syringae pv. mori str. 301020] Length = 1031 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 265/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S++S GA S + ++ + A+AITD L + Q + + Sbjct: 1 MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ IIG ++ I+ P VLLV + GY+ L +L++ Sbjct: 59 TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R+ E ++GL+ + +Q ++ F +RL++ Sbjct: 102 RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152 Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242 ++ HRG D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + +L+ + + D A +V IARRC+F L+ P + + Sbjct: 213 GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + + LR G R G R +++ EL +I KF YFL V D Sbjct: 269 --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF Sbjct: 321 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+Y+ +YG R A + A+RDV + L +P Q++ L Sbjct: 380 EHARREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 S + + + P + R+L ++ +L G RH S H G VI + PL L Sbjct: 440 SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601 VP+ +D + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ + Sbjct: 496 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P DD +TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 556 PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+N +E I P + + + T GV ++QEQVM++A + +GY+ EAD LRRAM Sbjct: 616 PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674 Query: 720 KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + + +ER +G N A IFE + F YGF +SHAA++A+++Y + W Sbjct: 675 WKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K H P F A + + QDAR+ +I+I P V D + Sbjct: 735 LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794 Query: 832 --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + I L ++G AR I A + + F D R L+ R E+L +G Sbjct: 795 TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + + + Sbjct: 852 ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPRVA 895 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG HPL + + L + ++ ++ + +A +V+ +Q+ T Sbjct: 896 EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 956 ASG--VTFVTLEDEFGMVNVVVW 976 >gi|225874743|ref|YP_002756202.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225794171|gb|ACO34261.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1071 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 276/1048 (26%), Positives = 477/1048 (45%), Gaps = 48/1048 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +V L S++S L+ A + D+ A PA+A+ D N L+ A F A Sbjct: 1 MTD--RYVELHAASAFSFLQAASQPEKLTDRAAEIAMPALALLDHNGLYGAARFHTAAQR 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 I+ IG ++ + + I LL + EGYQ L +L++R + Sbjct: 59 NNIRAHIGAEIAVSSFGPRWLPPAWLPHQCKSEPTRIPLLCESREGYQNLCQLITRFKMR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 ++ K+S L E + GL+ LTGG GP+ A + + ++FG Sbjct: 119 EETKESGAATFDDLSEYAS-GLVCLTGGDEGPLAAALSSGGEAAGREAVEELTRIFGRGS 177 Query: 182 LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239 +YV LQRH + +R +++A + LP++ATN + + E D+ A+ + + Sbjct: 178 VYVELQRHQDREEEWRNQAALRIARSLNLPVIATNGVRHATPYEREVLDLFTAIRNHIEL 237 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 +L+ SEM ++F D+P A+ENT+ ++ R F L PR+ + Sbjct: 238 DQAGRLLATNSQRHLRTASEMTALFRDIPGAVENTLVLSSRLGFQLHDLGYEFPRYPVPD 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D ++ LR + G+ R A + +++++ EL +IA++ F+GYFLI Sbjct: 298 GD----TMDSFLRKRVEEGVLRRYAPKNDRGLM--ERAKKQVEHELTLIAKLGFAGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D I++ ++++I V GRGS A SV Y L IT +DP+ LLFERFL+ R PD D Sbjct: 352 VWDIIRFCQQHDILV-QGRGSAANSVVCYCLEITAVDPVGMDLLFERFLSESRNEWPDID 410 Query: 420 IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +D ++R++ I+YV +YG A + + K+A R+ G+AL + RL L Sbjct: 411 LDLPSEEKREQAIQYVYRRYGELGTAMCANVITYREKSAARETGKALGFDEETLGRLSSL 470 Query: 479 --IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 + ++ + F L S +++ L RH H+ G+VI Sbjct: 471 AGQWEWRGNTDTMAHTFHHAGFDIRHARIAKYIEL---SMRIQDLPRHLGQHSGGMVICQ 527 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596 L+++VP+ R ++ V Q++ + G+IK D LGL + +L L+ + + Sbjct: 528 GHLNKVVPLERASMANRHVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLELIPRHYGNK 587 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655 D E Y ++ T+G+FQ+ES +L P D++ V++ RPGPI Sbjct: 588 VDLAQLPQDDEVYRVVQRADTVGMFQIESRAQMASLPRNCPRKFYDLVVQVAIIRPGPIV 647 Query: 656 -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + Y R+ GKE + HP + P+L+ T GV ++QEQ+++IA ++ +S +EAD LR Sbjct: 648 GQMMHPYMRRRQGKEAVTYPHPSLVPVLERTLGVPLFQEQLLRIAMTVADFSGAEADELR 707 Query: 715 RAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 RA+ ++ E M + +G ++NGI + I + ++ FA YGF +SHAA++A+I+ Sbjct: 708 RAVGMRRSWERMKNLEGNLRAGMTRNGIDERTQDTIVQQISSFALYGFPESHAASFALIA 767 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831 Y +A++K Y F AA + + +DA++ +++ P V V Sbjct: 768 YASAYLKVKYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVKPIDVQVSEWRCTVEHE 827 Query: 832 ---DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + L + + +A ++ + D PF S+ED RV LNR+ L+ L Sbjct: 828 SDGGLALRIGLGYARQLKRESAEALVRSRLQDGPFRSVEDVAQRVPF--LNRKELKRLAE 885 Query: 888 AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 GAL+ R L ++ K + A+ + D Sbjct: 886 IGALNQLQGIEHRRDALWQIERAGKL-----------EGPLLANAESLREDSEARP-LQQ 933 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 N R + G HP+ + LR+ I ++ G +R+A ++++Q Sbjct: 934 MNVEERLVADYAGTGLTVGRHPMHYRRAELRRANILSAQDLRQRRDGEYVRVAGCIIARQ 993 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + T KG +++ + P Sbjct: 994 RPGTAKG--FIFISMEDETGICNVIVTP 1019 >gi|227535154|ref|ZP_03965203.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187199|gb|EEI67266.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1098 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 324/1028 (31%), Positives = 516/1028 (50%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L S Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L GL+ +T P A N A L + +YV L Sbjct: 101 VAFADLL---PLTGLVAIT-LPDSPFSAAVAANDHDRAVAFLQELDNKQPEAVYVGL--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D Sbjct: 154 --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + S + + L A++N +IA + + P LP + + Q Sbjct: 212 AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R I Y+QRL +EL+VI +M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 383 RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP +D Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++K H P Sbjct: 681 AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L ++KG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I A + PF D R++ K L + L+ AGA D F +R Q + +L Sbjct: 801 RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + +V + Sbjct: 910 HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 TVSLTVFP 974 >gi|111221614|ref|YP_712408.1| error-prone DNA polymerase [Frankia alni ACN14a] gi|111149146|emb|CAJ60829.1| putative DNA polymerase III (ALPHA CHAIN) DNAE2 (DNA NUCLEOTIDYLTRANSFERASE) [Frankia alni ACN14a] Length = 1106 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 291/1033 (28%), Positives = 479/1033 (46%), Gaps = 44/1033 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA +++++ A+A+TD + L+ + F++ A G++ + Sbjct: 57 YAELHCHSAFSFLDGASQPEDLVEEAVRLGLSALALTDHDGLYGVVRFAEAAREVGLRTV 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G ++ + + P +++L EGY+RL L+S +L K + Sbjct: 117 FGAEISL-----GARAARAGETDPDGDHLLVLARDPEGYRRLARLLSDAHLAGGEKGRLV 171 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 +LTG G + RA + A L +LFG + + V L H Sbjct: 172 AEPEACARAAGGHWQVLTGCRKGTVPRALARSGPAAAGAALAELAELFGRENVAVELADH 231 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLF-LSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 D R + +LA T LPLVAT N + A + A ++ Sbjct: 232 AHPLDSARNDALAELARTARLPLVATGNVHYAAPGAARLAAAMAAVRARRSLAEMDGWLP 291 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +L++ +EM F+ P A+E I C+F L + AP LP F E Sbjct: 292 AAGTAHLRSGAEMAQRFARFPTAVEQAARIGAECAFDLHLVAPRLPDFPVPPG----HTE 347 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR + G R A +L EL +I ++ F GYFLIV D +++ Sbjct: 348 ASWLRLLTMQGAARRY---GPAGQERIAGAYDQLAHELGLIEQLGFPGYFLIVHDIVEFC 404 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 +++ I GRGS A S YAL IT +D + F LLFERFL P+R PD D+D RR Sbjct: 405 RRHRIL-CQGRGSAANSAVCYALGITGVDAVSFGLLFERFLAPERDGPPDIDLDIESGRR 463 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV +YG +R AQ+ + + ++A+RDV RAL Q D + + Sbjct: 464 EEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVARALGFSAGQQDAWSRQLDRW----- 518 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 SL A + +++ +L G RH H+ G+VI DRP+ ++VP+ Sbjct: 519 SLPAAGPPPSGDGGGPEHDIPPEVTQLADRLLGFPRHLGIHSGGMVICDRPVGEVVPVEW 578 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 V Q++ AGL+KFD LGL L++L K+ D + G +DLSLIP +D Sbjct: 579 ARMPGRTVIQWDKDDCAAAGLVKFDLLGLGMLSMLHKAFDLIRGHHGRDLDLSLIPPEDP 638 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 639 AVYDMLCAADSIGVFQVESRAQMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRR 698 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG E++ HPL+ L +T GV ++QEQ+MQ+A ++G+S +EAD LRRAM K+ + Sbjct: 699 RNGAEEVTYPHPLLRRSLAKTLGVPLFQEQLMQMAIDIAGFSAAEADELRRAMGSKRSAD 758 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +++ +ER +G + +GI+ +A ++F L+ FA++GF +SH+ ++A + Y ++W+K +Y Sbjct: 759 RIERLRERLYTGMAASGITGALADDLFTKLSAFANFGFPESHSVSFAFLVYASSWIKLYY 818 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSLAA 841 P F AA + + + DAR+ ++++ P VN V + R+ L+ Sbjct: 819 PAAFCAALLNAQPMGFYSPQSLVADARRHGVEVLRPDVNASAVGASLVGAQPRVRLGLSG 878 Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 ++ VG + AR I+E A P+ + D RV L+ +E+L AGA CFG +R + Sbjct: 879 VRRVGESLARRIVETRVAGGPYAGMADLVRRV---GLSVDQVEALATAGAFACFGVARRE 935 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L + + +R + F + + + G Sbjct: 936 ALWAAGAV----AQARPDRLDGMV--FGADVAAVA-----PYLPGMTGVEESVADLWATG 984 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 G+P + L G+ G + +A +V +Q+ T G+ +V Sbjct: 985 ITTEGYPTRFLRERLAAQGVTAAAGLRDAEAGRRVLVAGIVTHRQRPATAGGT--TFVNL 1042 Query: 1021 SEPAKEYEANFFP 1033 + P Sbjct: 1043 EDETGLVNVICSP 1055 >gi|301066411|ref|YP_003788434.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|300438818|gb|ADK18584.1| DNA polymerase III, alpha subunit [Lactobacillus casei str. Zhang] Length = 1098 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 325/1028 (31%), Positives = 517/1028 (50%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L S Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L GL+ +T P A N A L + +YV L Sbjct: 101 VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D Sbjct: 154 --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + S + + L A++NT +IA + + P LP + + Q Sbjct: 212 AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R I Y+QRL +EL+VI +M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 383 RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP +D Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++K H P Sbjct: 681 AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L ++KG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I A + PF D R++ K L + L+ AGA D F +R Q + +L Sbjct: 801 RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + +V + Sbjct: 910 HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 TVSLTVFP 974 >gi|239631558|ref|ZP_04674589.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526023|gb|EEQ65024.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1098 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 325/1028 (31%), Positives = 517/1028 (50%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L S Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L GL+ +T P A N A L + +YV L Sbjct: 101 VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D Sbjct: 154 --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + S + + L A++NT +IA + + P LP + + Q Sbjct: 212 AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R I Y+QRL +EL+VI +M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 383 RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP +D Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++K H P Sbjct: 681 AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L ++KG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I A + PF D R++ K L + L+ AGA D F +R Q + +L Sbjct: 801 RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + +V + Sbjct: 910 HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 TVSLTVFP 974 >gi|167754597|ref|ZP_02426724.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402] gi|167705429|gb|EDS20008.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402] Length = 1017 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 352/1023 (34%), Positives = 548/1023 (53%), Gaps = 52/1023 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+SSYS + + +++ K + A+A+TD +N++ A+E ++ A GI+ + G Sbjct: 4 HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + ++LL GY L+++ S + L ++G I Sbjct: 64 LEASVEINHEI-------------YPLLLLARDVTGYFDLVKITSEICLSERG----AIS 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191 L L E L +++ G I+R A K L FK F + YV LQ H Sbjct: 107 LEALSLY-REHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 + ++V LA +P+ TN +L++++ D+L A A D Sbjct: 165 MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKG---MMLDLEHQVQT 221 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 L +S + +ENT +I R C+ + LP++ + D + L Sbjct: 222 DQLYLKSSFEMESLFDKKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 R + GL+ R I +Y +RL EL VI +M F+ YFLIV D++++AK + Sbjct: 278 RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF DRRDEV+ Sbjct: 333 ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490 YV KYGHE VAQI+TF + K A++D+G+ L +P +++ L K IP + + S + Sbjct: 393 NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 F+ DP++ +++ +E L R+ STHAAG+V+ + L Q+VP+ R Sbjct: 453 VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 + VTQ++ +IE+ GL+K DFLGLK LT++ + D V+++++ I D +TY Sbjct: 513 NG-VVTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 +++ T GIFQLESSGM+ L MQ DC++D+IA ++L+RPGP+ NI Y RK GKE Sbjct: 572 EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 I + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK M K Sbjct: 632 PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 FI G NG S+ AV +FEL+ +FA+YGFNKSH+ Y I+Y A++K ++P+EF + Sbjct: 692 SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ E + Q+ +++ ++++ PS+N FKV D I YSL AIK VG Sbjct: 752 ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I + F + DF SR++S KLN ++L+SL+ AGA D F +R + Q+L I Sbjct: 812 YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YA+ ++ + +N E E+ VLG Y + HP+ Sbjct: 872 EYAELKN---------------SIGIEEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + K L++ I E I +R+ + + +KG + +V + E +A Sbjct: 917 LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974 Query: 1030 NFF 1032 F Sbjct: 975 VVF 977 >gi|293400488|ref|ZP_06644633.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305514|gb|EFE46758.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1038 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 341/1024 (33%), Positives = 561/1024 (54%), Gaps = 42/1024 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S Y+LL+ +++ I+D A+A+ D + A+ F A A IQPI Sbjct: 14 VHLHVRSCYTLLQSTMTIQKIVDSAKRYGYHAVALCDKEVMHGAMAFYHMAKKADIQPIF 73 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G ++++ ++ + +LL GYQ L++L + + + + ++ Sbjct: 74 GMEVEVAEEEGI-------------FGFILLAKNDNGYQALMKLSTMLNTKE---RKEQL 117 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 + L T+ ++LT G ++ + L K+ F YV + R+ Sbjct: 118 TMEELLTY-TKDCVVLTNGDQNQMETYLIKEEMEHLAAFLQRCKESFA-TFYVAISRNDS 175 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 R + + L ++P A + F + E++ L A+ + K Sbjct: 176 PLLRQKNRLLKALCQQMQIPTTALSRIYFDEAKGEESYKTLCAINQGVSLDDKMLNYSPK 235 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 ++ D A + +IA+ C ++ ILP+F + E Sbjct: 236 RYFRSKEEMAELYDEDDLAASD---KIAQMCHVEMKFPKAILPKFKNRYGM----SSEEF 288 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR GLE R+ Y QRL +EL+VI M ++ YFLIV DFI++AK Sbjct: 289 LRRLCHKGLEKRMQ-----YQKIPSVYEQRLRYELDVIISMGYADYFLIVWDFIRFAKTQ 343 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 +I +GPGRGS AGS+ AY L IT DP+R+ LLFERFLNP+R+SMPD D DF DRRDEV Sbjct: 344 DIYIGPGRGSAAGSLVAYCLGITHADPIRYHLLFERFLNPERVSMPDIDTDFPDDRRDEV 403 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV + YG V+ IITF +L AK LRDVG+A+Q+ Q+D LCKL+PN P + Sbjct: 404 IAYVHDLYGEHHVSHIITFNTLAAKQVLRDVGKAMQVAPRQIDLLCKLVPNRPKVTL-QD 462 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A + +F++ + + +L I+ +LEGL RH+S HAAGI++ + +S + P+ DV Sbjct: 463 AYQERVKFKQMINSGEQMRKLFAIALQLEGLPRHSSLHAAGIILSNEDISNVCPLI-DVD 521 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610 + TQF M+++E+ GLIK DFLGL+ LT++ + + + + ++D+ IP DD +TY Sbjct: 522 EGMCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVHQINAKEKRLDIMHIPLDDAKTYQ 581 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 L+ + T+G+FQLES GM+ + M+P C EDI+A V+L+RPGP++NI Y + EK Sbjct: 582 LIRSVDTVGVFQLESEGMKNLIRKMKPTCFEDIVATVALFRPGPMENIPRYLECRTHPEK 641 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP + P+L+ T GV+IYQEQVMQIAQ ++G+SL +AD LR+A+ KK +E+ +E Sbjct: 642 VDYLHPDLKPILENTYGVMIYQEQVMQIAQTMAGFSLGKADNLRKAISKKKGKELQSLRE 701 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 F+ GA + G +++A+ ++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F A Sbjct: 702 DFVEGAKQKGYEESLAIRVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFTA 761 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 + + + K ++ +AR+ +I+I+ PS+N +++ N + + L IKG+G + Sbjct: 762 LLNSVIGSETKTSEYVFEARKRHIEILLPSINQSSNQYEIEGNALRFPLVGIKGIGNAVS 821 Query: 851 RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 ++E F DF +R++ +KL ++ +E L+FAGALD F +R LL SLD+ Sbjct: 822 NVLIEERQKRGNFKDFFDFVARMEGQKLGKKTMEMLIFAGALDEFKINRSSLLASLDDAI 881 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +Y V+ ++ +F E + +L++ N++ R E E+ +LGFY S HP+ Sbjct: 882 RYGDLVKIEDQDQI--LFDFELVSKPALTSLKE----NAAQRAEREKEMLGFYLSAHPIT 935 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +++ G+ + + + ++ MV +Q +T+ G + +V ++ +++ Sbjct: 936 ALRDKMQQ-GLVPLIALTSHLH-SYVKFICMVERTKQFRTKNGHLMMFVVGADETGKFDL 993 Query: 1030 NFFP 1033 P Sbjct: 994 VCMP 997 >gi|213966980|ref|ZP_03395130.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] gi|302059720|ref|ZP_07251261.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato K40] gi|302134128|ref|ZP_07260118.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928302|gb|EEB61847.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato T1] Length = 1031 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 264/1037 (25%), Positives = 446/1037 (43%), Gaps = 80/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + D+ A+AITD L + Q + G+ I Sbjct: 5 YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ P IVLLV GYQ L L++ + K R Sbjct: 65 VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + L + G + ++ F +RL++ ++ HR Sbjct: 108 LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248 G D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + +L++ + + D A ++ IARRC+F P + + + Sbjct: 219 NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR G+ R +G R +++ EL +I KF YFL V D +++A+ Sbjct: 273 SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF DRR+ Sbjct: 327 SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ +YG R A + ALRDV + L +P Q++ L S Sbjct: 386 EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + P + R+L ++ +L G RH S H G VI + PL LVP+ Sbjct: 446 PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ +P DD Sbjct: 502 AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ R+ Sbjct: 562 TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N +E I P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 622 NNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 D +ER +G NG A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 681 LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835 F A + + QDAR+ +I+I V D + + I Sbjct: 741 AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNLAI 800 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++ A I A + +PF D R L+ R E+L +GAL Sbjct: 801 RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + +F + + + Sbjct: 858 GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 LG HPL + + L + ++ +A + +A +V+ +Q+ T G + Sbjct: 902 YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG--V 959 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 960 TFVTLEDEFGMVNVVVW 976 >gi|116494849|ref|YP_806583.1| DNA polymerase III, alpha subunit [Lactobacillus casei ATCC 334] gi|116104999|gb|ABJ70141.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus casei ATCC 334] Length = 1098 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 323/1028 (31%), Positives = 515/1028 (50%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L S Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L GL+ +T P A N A L + +YV L Sbjct: 101 VAFADLL---PLTGLVAIT-LPDSPFSAAVVANEHDRAVAFLQELDNKQPEAVYVGL--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D Sbjct: 154 --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + S + + L A++N +IA + + P LP + + Q Sbjct: 212 AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R I Y+QRL +EL+VI +M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS GS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSATGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 383 RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP +D Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++K H P Sbjct: 681 AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L ++KG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I A + PF D R++ K L + L+ AGA D F +R Q + +L Sbjct: 801 RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + +V + Sbjct: 910 HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 TVSLTVFP 974 >gi|294339290|emb|CAZ87646.1| Error-prone DNA polymerase [Thiomonas sp. 3As] Length = 1037 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 271/1037 (26%), Positives = 464/1037 (44%), Gaps = 64/1037 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ P +V L S++S L GA ++++ +A+TD +L + A A Sbjct: 1 MDPLPDYVELHCRSNFSFLTGASHPEELVERAQELHYAGLAVTDECSLAGIVRAHGAAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ ++G Q ++ + + ++V+L GY L E ++R+ Sbjct: 61 AGLPLLVGAQFAVEGDEKTRTPP---------FTLVVLACNLNGYGNLCEFITRLRRAS- 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K S R+ + ++L S + + + F R+++ Sbjct: 111 PKGSYRLDRQSITGEALADCVVLAVPS--------RQATDEQLLELGAWLLARFTGRVWL 162 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 ++ HR D R ++ LA +PLVA + D L A+ + + Sbjct: 163 AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLG-LPIAE 221 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 + P+ RS + S PE L T+ +A RC F L P+ + + Sbjct: 222 CGHALQPNAERHLRSRLRLALSYPPELLAETLRVAARCRFSLDELRYRYPKEVIPAGE-- 279 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR + G R G A + L+ EL +IA + ++ YFL V D Sbjct: 280 --TADGYLRRRVYEGAGRRWPDGLHA------RVQDLLEHELALIAELGYAHYFLTVDDI 331 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+ +I GRGS A S YAL IT++DP + +LFERF++ +R PD D+DF Sbjct: 332 VAFARSRHIL-CQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDFE 390 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI+Y+ KYG +R A + K+ALRDVG+AL V+RL + + Sbjct: 391 HERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVERLARNVQWWD 450 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 V+ + + + V + + + ++L G RH S H G V+ + PLS+LV Sbjct: 451 GREVARERLEEV----GLDPEALGVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRLV 506 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602 P+ + V +++ ++ AGL+K D L L LT ++K+LD + Q RG + IP Sbjct: 507 PIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSRGQVFAMQDIP 566 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY +L ++G+FQ+ES + L +QP C D++ ++ RPGPI +V+ Sbjct: 567 REDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVHP 626 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K +V ++ +L+ T GV ++QEQVMQIA + +G+S EAD LRRAM Sbjct: 627 YLNRRQGKETVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAAW 686 Query: 721 IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + +K ++R ISG ++ G A +I+E + F++YGF +SHAA++A++ Y +AW+ Sbjct: 687 RRTGSLEKYRDRLISGMAERGYPPDFAQSIYEQVQGFSEYGFPESHAASFALLVYASAWI 746 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835 K H+P EFL A + + + QDA++ + + P V D + + + Sbjct: 747 KRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEGVPYPTV 806 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L +KG+G I A P ED R +L+ + L A AL Sbjct: 807 RLGLRLVKGLGREVGWRIANARLHSPPVDAEDLAKRA---QLDTPAMRQLAAADALRSLS 863 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + +++ + + E+ + + Sbjct: 864 GHRRQQVWEATAVERLPALL--DDAAPQEDWL--------------ELPAPPEGEDIVFD 907 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HPL + +P+L K ++ E G +R +V +QQ +T KG+ Sbjct: 908 YATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGT-- 965 Query: 1016 GWVTFSEPAKEYEANFF 1032 +V+ + + + Sbjct: 966 TFVSLEDETGTVQVICW 982 >gi|229552164|ref|ZP_04440889.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314466|gb|EEN80439.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1098 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 327/1028 (31%), Positives = 510/1028 (49%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L + GL +T P A A+ L T K LY+ + Sbjct: 101 -LAFADLLPLN--GLAAVT-LPDSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D Sbjct: 154 --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + L A+ T IA R + P LP + + + Sbjct: 212 AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPDQTPSK-- 269 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L A +GL R +I Y+ RL +EL VI M F+ YFL+V D + + Sbjct: 270 --DYLTKLAESGLAKRFHGQSI-----PPAYQDRLQYELRVIIEMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 383 RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFYID 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP DD Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P + +L+ T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++K HYP Sbjct: 681 AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L +IKG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I A + PF L D R+D K L ++ AGA D F +R Q L +L Sbjct: 801 RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + +S R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSML------APKTIEVPEMPASERLEAEAEVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + ++ + Sbjct: 910 HPVDKYAPLKTQYRLINVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 NVSLTIFP 974 >gi|258592047|emb|CBE68352.1| Error-prone DNA polymerase [NC10 bacterium 'Dutch sediment'] Length = 1062 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 282/1050 (26%), Positives = 458/1050 (43%), Gaps = 76/1050 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + S S+ L S +S LEGA + ++++ A+A+TD + ++ + KA Sbjct: 14 MA-SHSYTPLWCKSHFSFLEGASHPDELVEEAHRLGLKALALTDRDGVYGIVRAHVKARE 72 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 G+ I+G Q+ + + +VLL +GY L L++ L Sbjct: 73 LGLHLIVGAQVALAD-------LPVRRTQTGHSILVLLAQDRDGYSNLCRLITTGRLRS- 124 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K + + + + GLI L GG ++ + +FGDRLY Sbjct: 125 PKGESSVTWNEVCQ-HAGGLIALWGGEQS------LRTGEADPDEVAGQLRDVFGDRLYA 177 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242 L RHR D R E+++ A + LPLVA L+ ++ D L A+ H V + Sbjct: 178 FLARHRQADEVRTEARLRARAARYGLPLVAATEVLYHTQIRRPLQDTLTAIRHGVAVSTA 237 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R + +H LK+ + ++F+D P A+ T E+A RC+F L P Sbjct: 238 GRRLKPNAEHDLKSPHDFAALFADDPAAIARTEEVAGRCAFSLAELRYRYPSERLPNG-- 295 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR G R G D ++L+ EL +I +++ GYFL + + Sbjct: 296 --TTSSQRLRQLTFEGARRRY------DGEVPPDVLRQLETELALIDALEYPGYFLTMWE 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +Q+ ++ I GRGS A S Y L IT IDP+R LLFERF++ +R PD D+D Sbjct: 348 IVQFCRQRGIL-CQGRGSAANSAVCYCLGITAIDPVRMGLLFERFISKERAEPPDIDLDI 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+EVI++V + YG A + + ++A+RDVG+AL +P + +DRL KL+ + Sbjct: 407 QHNRREEVIQHVYDTYGRSHAAMVANVIRYRPRSAVRDVGKALGLPETSMDRLAKLLSHH 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + R P LL +S ++ RH S H G ++G P+ + Sbjct: 467 GDIE------PEALRQAGLDPETPLHRHLLRLSSEILETPRHLSIHPGGFLLGHDPIWTI 520 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601 VP+ V Q++ +E GL K D LGL L+ L L +D++ I Sbjct: 521 VPVENATMPGRTVIQWDKDDLEALGLFKVDLLGLGALSHLDLCFRLLKHHRGLDLDMAGI 580 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D T+ ++ T+G+FQ+ES L ++P D++ VS+ RPGPI +V+ Sbjct: 581 PPNDPSTFEMIQRADTVGVFQIESRAQMAMLPRLRPRSFYDLVIEVSIVRPGPIAGGMVH 640 Query: 662 NNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + + E ++ HP + P+L++T GV ++QEQVM++A + + Y+ EAD LRR M Sbjct: 641 PYLRRRRGEEPVLYPHPSLQPVLEKTLGVPLFQEQVMRLAMIAADYTPGEADQLRRDMAA 700 Query: 720 KI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 +++ +ER IS GI+ A +F + F +YGF +SHAA++A+I+Y TAW Sbjct: 701 WRGPGRIERHRERLISRMQTKGIAAEFAERVFSQIQGFGEYGFPESHAASFALIAYATAW 760 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831 +K HYP EF A + + +DA++ + + P D + Sbjct: 761 LKRHYPAEFTCALLNAQPMGFYVPATIVEDAKRHGLLVRPVDAQASTWDCTLEPCPQSAA 820 Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 I L +KG+ I +A PF SL DF R L++ L L AGA Sbjct: 821 GFAIRMGLRYVKGLREGDWNRIEQARHIAPFTSLADFSRRT---GLDKGALTVLAEAGAF 877 Query: 892 DCFG--------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 + FG R L Q + Sbjct: 878 EGFGSVGTAQDRLDRRMALWGALGCQSEV-----------------TPLPTVVQEASPAL 920 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + + + R GHPL + L+ +K + G+ +R A +V+ Sbjct: 921 TPLGVAEEIAWDYRRTDHSPRGHPLAPLRKALQAQSLKDARTIASMRHGSRVRYAGLVIC 980 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++T + +P Sbjct: 981 RQRPGTASG--VTFMTLEDETGFVNLVLWP 1008 >gi|330875010|gb|EGH09159.1| error-prone DNA polymerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1031 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 266/1037 (25%), Positives = 447/1037 (43%), Gaps = 80/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + D+ A+AITD L + Q + G+ I Sbjct: 5 YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ P IVLLV + GYQ L L++ + K R Sbjct: 65 VGSEMHLENG----------------PKIVLLVESLTGYQALCTLITVARRRAK-KGEYR 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + L + G + ++ F +RL++ ++ HR Sbjct: 108 LLREDFDHLPDGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248 G D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + +L++ + + D A TV IARRC+F P + + + Sbjct: 219 NGERHLRSLDALAEHYPDWLLA--ETVRIARRCTFTFDQLQYEYPHELVPKG----QTAT 272 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR G+ R +G R +++ EL +I KF YFL V D +++A+ Sbjct: 273 SWLRELTERGIRRRWPKGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF DRR+ Sbjct: 327 SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERDEPPDIDVDFEHDRRE 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ +YG R A + ALRDV + L +P Q++ L S Sbjct: 386 EVIQYIFRRYGRGRTALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDALPS 445 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + P + R+L ++ +L G RH S H G VI + PL LVP+ Sbjct: 446 AERLREY----GFDAETPILKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ +P DD Sbjct: 502 AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPSDDRP 561 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ R+ Sbjct: 562 TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E + P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 622 NGEEAVTYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 D +ER +G NG A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 681 LDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835 F A + + QDAR+ +I+I P V D + + I Sbjct: 741 AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNLAI 800 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++ A I A A +PF D R L+ R E+L +GAL Sbjct: 801 RLGLRMLRSFREEDALRIEAARAKRPFADATDLTQRA---GLDSRAAEALADSGALRGLI 857 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + +F + + + Sbjct: 858 GHRHRARWEVAGV------------EAQRPLFDDLTSEEVQ----VTLPLPTVAEDLVAD 901 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 LG HPL + + L + ++ + + +A +V+ +Q+ T G + Sbjct: 902 YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLTLENNRTLSVAGLVIGRQRPGTASG--V 959 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 960 TFVTLEDEFGMVNVVVW 976 >gi|258508368|ref|YP_003171119.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|257148295|emb|CAR87268.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus GG] gi|259649682|dbj|BAI41844.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1098 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 329/1028 (32%), Positives = 512/1028 (49%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L + GL +T P A A+ L T K LY+ + Sbjct: 101 -LAFADLLPLN--GLAAVT-LPDSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D Sbjct: 154 --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + L A+ T IA R + P LP + + Q Sbjct: 212 AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTS 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A +GL R +I Y+ RL++EL VI M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 383 RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP DD Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P + +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++K HYP Sbjct: 681 AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L +IKG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I A + PF L D R+D K L ++ AGA D F +R Q L +L Sbjct: 801 RRDFVEAIFAARKNGPFRDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + +S R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSML------APKTIEVPEMPASERLEAEAEVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + ++ + Sbjct: 910 HPVDKYAPLKTQYRLINVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 NVSLTIFP 974 >gi|170690324|ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] gi|170144759|gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] Length = 1049 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 271/1038 (26%), Positives = 449/1038 (43%), Gaps = 64/1038 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S++S L GA + ++ A A+AITD +L + A A + Sbjct: 9 PAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + D ++LL EGY L EL++ K Sbjct: 69 FIVGSYFRLVNADG-----------SPAFGLILLARNREGYGNLSELITLARTR-APKGE 116 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L+ + + + F V + ++ + F R +V L Sbjct: 117 YRLTPQDLSRPDKEYRHLLGVPDCLAILVPS--FPAKEDVLDAQVEWLDETFPGRAWVGL 174 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V +A ++P+VA L D + A+ V + Sbjct: 175 VLHQRAMDDIHRGAVEFVARNRDVPVVALGEVLMHVRSRKPLQDTITAIRVGKPV-HECG 233 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + P+AL TV+IA RC+F L P + Sbjct: 234 YDLAPNAEQHLRSRLRLANLYSPDALAATVDIAARCTFSLDELRYEYPDELVPPGF---- 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G + R G +++++ EL +I +++ YFL V D ++ Sbjct: 290 TPGAYLRQETYIGAQRRFPSG------IPHHVQEQIEHELELIGDLQYEPYFLTVYDLVR 343 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 344 FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG +R A + +A+ LR+ G+AL + VD + K Sbjct: 403 RREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAKSHHWFDNS 462 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ + P + ++ +L G RH S H+ G VI L++LVP+ Sbjct: 463 ADLLKRFEEC----GLNPDTPLIRAWASLAAQLYGFPRHLSQHSGGFVISRGKLTRLVPV 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604 + V Q++ +E GL+K D L L L+ ++++LD QRG + ++ IP + Sbjct: 519 ENAAMPERSVIQWDKDDLESLGLLKIDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPAE 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662 D TY +++ T+G+FQ+ES L M+P D++ V++ RPGPI + Y Sbjct: 579 DKATYDMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGGAVHPYL 638 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ G E + + L T GV I+QEQVMQ+A L +G++ EAD LRRAM Sbjct: 639 RRRQGFEPVTYPGDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K + K +R + G + G A IFE + F +YGF +SHAA++A++ Y ++W+K Sbjct: 699 KGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835 H P FLAA + + + QDA++ ++++P V + + + Sbjct: 759 HEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWNSSLEPMAGEKRPAV 818 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L+ ++G+ TA I + A +PF S++D R L+RR L L A AL Sbjct: 819 RLGLSLLRGMKEGTAERIENSRAVRPFASVKDLARRA---ALDRRDLHILADANALAALA 875 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L + +++ A + + + + Sbjct: 876 GNRREALW------------QSVAAVPEKDMLAAAAVEDET----PELGAPSEANDILAD 919 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 R +G HPL++ +P L + G R +V +Q+ T KG + Sbjct: 920 YRSVGLTLGRHPLELLRPQLLANRLMPAATLRTYRDGRLARGCGLVTVRQRPGTAKG--V 977 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT + +P Sbjct: 978 VFVTLEDETGNVNVIIWP 995 >gi|199598719|ref|ZP_03212133.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001] gi|199590407|gb|EDY98499.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001] Length = 1098 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 328/1028 (31%), Positives = 512/1028 (49%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L +++ A+A+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q++I ++++ GY +L++L +++ L Q Sbjct: 62 LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + L + GL +T + P A A+ L T K LY+ + Sbjct: 101 -LAFADLLPLN--GLAAVT-LPNSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYLGV--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + E + A T +LPL+A N L+ D V++A+ + ++ +D Sbjct: 154 --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + + L A+ T IA R + P LP + + + Sbjct: 212 AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPDQTPSK-- 269 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L A +GL R +I Y+ RL++EL VI M F+ YFL+V D + + Sbjct: 270 --DYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R + + + K IPN Sbjct: 383 RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP DD Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ESSG++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P + +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+ +++ A++K HYP Sbjct: 681 AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +N FK+ +I + L +IKG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I A + PF L D R+D K L ++ AGA D F +R Q L +L Sbjct: 801 RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + +S R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSML------APKTIEAPEMPASERLEAEAEVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + ++ + Sbjct: 910 HPVDKYAPLKTQYRLVNVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 NVSLTIFP 974 >gi|191638356|ref|YP_001987522.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|190712658|emb|CAQ66664.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei BL23] gi|327382384|gb|AEA53860.1| DNA polymerase III [Lactobacillus casei LC2W] gi|327385585|gb|AEA57059.1| DNA polymerase III [Lactobacillus casei BD-II] Length = 1098 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 324/1028 (31%), Positives = 516/1028 (50%), Gaps = 59/1028 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +F LQVHS+Y+LL L+L++++ + AIA+TDTN ++ +EF ++A AAG++P Sbjct: 2 TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G Q+ ID ++++ +GY +L+++ +++ L S Sbjct: 62 LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L GL+ +T P A N A L + +YV L Sbjct: 101 VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHNRAVAFLQELDNKQPEAVYVGL--- 153 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + + ++ + A + +L L+A N L+ D V+ A+ + ++ +D Sbjct: 154 --DEAHLDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211 Query: 250 PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + S + + L A++N +IA + + P LP + + Q Sbjct: 212 AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L A GL R I Y+QRL +EL+VI +M F+ YFL+V D + + Sbjct: 268 SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A K NI G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R MPD D+D +R Sbjct: 323 AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R E+I+YV +KYG +AQIITFG+ AK A+RDV R M + + + IPN Sbjct: 383 RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + P L + + LEGL RH STHAAGIV+ + PL+ V + Sbjct: 443 LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 L TQ +E GL+K DFLGLK L +L + F+ + G D IP +D Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G++ L ++P ED++A+ +LYRPGP++NI + RK Sbjct: 561 QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG+E I P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK + Sbjct: 621 NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 ++++FI GA K G + A ++ + +FA+YGFN+SHA AY+++++ A++K H P Sbjct: 681 AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845 F AA M M+N+ K++ + Q+A+ + ++ P +NT FK+ D +I + L ++KG+ Sbjct: 741 AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800 Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 + I A + PF D R++ K L + L+ AGA D F +R Q + +L Sbjct: 801 RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D + + +F+ + R E E VLG Y SG Sbjct: 861 DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP+D Y P+ + + + G + + +V ++ +T+ G + +V + Sbjct: 910 HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966 Query: 1026 EYEANFFP 1033 FP Sbjct: 967 TVSLTVFP 974 >gi|299137470|ref|ZP_07030652.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] gi|298600875|gb|EFI57031.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8] Length = 1072 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 282/1046 (26%), Positives = 480/1046 (45%), Gaps = 43/1046 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +V L V S++S LEGA ++ + A + PA+AI D N ++ A F Sbjct: 1 MTD--RYVELHVASAFSFLEGASQPEELMKRAAELEMPAMAILDRNGVYGAARFHTSGNR 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++ IG ++ + M P + LL + GYQ L +L+++ + Sbjct: 59 NGVRAHIGAEIAVSSFGTRWMPPAWLPNQFVAEPPRLPLLCESQAGYQNLCQLITQFKMR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 ++ K L + GL+ LTGG GP+ A + K + +++G + Sbjct: 119 EKSKLEGSATWEDLHQYAA-GLVCLTGGEEGPLAAALAEGGEEAGRKAVERLVRIYGPNN 177 Query: 182 LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +YV +QRH + +R +++A + LP++ATN + + E D+ AV H T + Sbjct: 178 VYVEVQRHYEREEEWRNQAAIRIACSLRLPVLATNGVRYAKAYEREVLDLFTAVRHHTEL 237 Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 Q R +L+ SEM +F D+P A EN++E++ R F L P++ E Sbjct: 238 DQAGRLLALNSQRHLRRASEMARLFHDVPNATENSIELSARLKFELDDLGYAFPKYPVPE 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + ++ LR + G+ R G + +++++ EL++IAR+ F+GYFLI Sbjct: 298 ----DESMDSFLRKRVAEGIVRRY--GPKNDRALLERAKKQVEHELDLIARLGFAGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D +Q+ K +I + GRGS A S YAL IT IDP+ LLFERFL+ +R PD D Sbjct: 352 VWDIVQFCKGRDILI-QGRGSAANSAVCYALEITVIDPVGMELLFERFLSENRGEWPDID 410 Query: 420 IDFCQD-RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +D + +R++ I+YV +YG A + + K++ R+VG+AL + RL L Sbjct: 411 LDLPSEGQREQAIQYVYQRYGELGAAMTANVITYRGKSSAREVGKALGFDQESLGRLSSL 470 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + IA + + P + + LE+ +++ L RH H+ G+VI Sbjct: 471 VSQWEWRG-KNDTIAHSFQHAGFDIKHPRIAKYLELCMRIQDLPRHLGQHSGGMVICQGQ 529 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L+ +VP+ R V Q++ + G+IK D LGL + +L L + Q + Sbjct: 530 LNSVVPLERASMPGRTVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLKLIPQHYGEAVD 589 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656 +D E Y +L T+G+FQ+ES +L P D++ V++ RPGPI Sbjct: 590 LAQLPEDEEVYRVLQQADTVGMFQIESRAQMASLPRNYPTRFYDLVVQVAIIRPGPIVGK 649 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + Y R+ +E + HP ++P+LK T GV ++QEQ+++IA ++ ++ +EA+ LRRA Sbjct: 650 MMHPYMRRRQKREPVTYPHPSLEPVLKRTLGVPLFQEQLLRIAMTVANFTGAEAEELRRA 709 Query: 717 M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 + ++ E M + +G + NGI I E ++ FA YGF +SHAA++A+I+Y Sbjct: 710 VGMRRSWERMKNLEVNLRAGMAANGIDLKTQDTIVENISSFALYGFPESHAASFAMIAYA 769 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834 +A++K Y F A + + +DA++ ++I+P V + + R Sbjct: 770 SAYLKVRYLAAFTCAILNNQPMGFYAPAVLVKDAQRHGLRILPIDVQISDWPCTIEEERD 829 Query: 835 ----IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + L KG+ +A ++++ D PF S ED RV LNR+ L L G Sbjct: 830 GSLSLRMGLGYAKGLSKQSAEMLVKSRDQDGPFRSAEDLALRVPI--LNRKGLMLLARIG 887 Query: 890 ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AL+ R L +D K + + Sbjct: 888 ALNKIDAIEHRRDALWQVDRAGKL-----------EGPLLRQNNEWLQEDSRTLPLQQMT 936 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + R ++ G HP+ + L+ I +E G +R A V+++Q+ Sbjct: 937 TEERLVSDYAGTGLTVGRHPMYYRRAALQSQRILSAQELKVYKDGEFVRTAGCVIARQRP 996 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T KG +++ + P Sbjct: 997 GTAKG--FIFLSMEDETGIANVIVTP 1020 >gi|311106704|ref|YP_003979557.1| DNA polymerase III subunit alpha 2 [Achromobacter xylosoxidans A8] gi|310761393|gb|ADP16842.1| DNA polymerase III, alpha subunit 2 [Achromobacter xylosoxidans A8] Length = 1074 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 281/1060 (26%), Positives = 436/1060 (41%), Gaps = 94/1060 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + LQ S++S L+GA ++D+ A A+AITD +L + +A A + Sbjct: 16 PGYAELQCQSNFSFLQGASHPEELIDRAAELGYAALAITDECSLAGVVRAHVEARARKLP 75 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + P + LL T EGY L EL++ K Sbjct: 76 LIIGATFQLR-----------AAPDAAPLGLTLLAQTREGYGNLSELITLARTR-APKGE 123 Query: 129 VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 R+ L + E L +L+ DR ++ ++F Sbjct: 124 YRLAPEDLTDPPAGYAHLRHLPECLAILSPAYGTDADRM---------AEQARWLARVFP 174 Query: 180 DRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 R +V L HR D + V Q A ELPLVA HD L + Sbjct: 175 HRAWVGLTLLHRSRDDLHRAAVEQAAQAAELPLVALGQVQMHLRSRKPLHDTLTGIRTRQ 234 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 VSQ ++ + R+ M P+A+ T+ +ARRC+F L P I Sbjct: 235 PVSQ-CGYELSGNAEQHLRTRMRLANLYPPQAMAQTLAVARRCAFSLDELRYEYPDEIIP 293 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 LR + +AG R G +++ EL +I + + YFL Sbjct: 294 RG----HTPATYLRQETLAGAARRFPLG------TPDSVTTQIEKELALITDLHYEAYFL 343 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V D +Q+A+ I GRGS A S Y L IT++DP+R + LFERF++ +R PD Sbjct: 344 TVYDIVQFARGQGIL-CQGRGSAANSAVCYCLGITEVDPVRGNNLFERFISKERNEPPDI 402 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF RR+EVI+Y+ KYG ER A S + ++ LRD G AL + +D + + Sbjct: 403 DVDFEHQRREEVIQYIYGKYGRERAALTAVVISYRPRSVLRDTGSALGVDLGVIDAVARA 462 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 L+ + ++Q L G RH S H G VI Sbjct: 463 HQWWDGKKEMLRTLGAC----GLDPESQVARHWASLAQTLMGFPRHLSQHPGGFVISRGK 518 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597 LS+LVP+ +D V Q++ ++ GL+K D L L L+ L+++L+ QR + Sbjct: 519 LSRLVPIENAAMADRSVVQWDKDDLDALGLLKVDVLALGMLSALRRTLELAGQRRGQPLR 578 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP DD TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 579 LQDIPPDDTPTYDMICDADTIGVFQIESRAQMTMLPRLRPRQYYDLVVQVAIVRPGPIQG 638 Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ R+ GKE + +L T GV I+QEQVMQIA + +G++ E+D LRR Sbjct: 639 GMVHPYLRRRQGKEPETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVAAGFTPGESDQLRR 698 Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M K +DK + + + G +G A +F + F +YGF +SHAA++A+++Y Sbjct: 699 SMAAWKRKGGVDKYRTKLVGGLLAHGYKLDFAEALFRQIEGFGEYGFPESHAASFALLAY 758 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 ++W+K H P FLAA + + + QDAR+ + ++PP V D + Sbjct: 759 ASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPPDVTISGWDSALETLP 818 Query: 832 --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871 + L+ I+G+ AR I +A A PF D R Sbjct: 819 EGHPGARRTTHPHAPSTDGPRPAVRLGLSLIQGMREDAARRIEDARATAPFADTGDLARR 878 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 LNR L +L AL R Q + + Sbjct: 879 A---ALNRHDLNALAAGDALRTLAGHRRQASWEAAASVQSRDLLRDAA------------ 923 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 + + S + + R +G HP+ + +P L + Sbjct: 924 ---IQETQAPQLSAPSEGQTVAADYRSVGLTLHSHPVALLRPQLAARNFQPASVLNGYPD 980 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 R +V +Q+ +T KG + +VT + Sbjct: 981 KRVARACGIVTVRQRPQTAKG--VIFVTLEDETGPVNVVV 1018 >gi|116687247|ref|YP_840493.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424] gi|116652962|gb|ABK13600.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424] Length = 1049 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 282/1044 (27%), Positives = 464/1044 (44%), Gaps = 77/1044 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AA + Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L E +S + + K + Sbjct: 70 LIIGSHFRLTAADGSPALA-----------FTALAMNRDGYGNLCEFISLGRMRSK-KGT 117 Query: 129 VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 R+ L+ T + + +L+ F + Q + ++ F ++FG Sbjct: 118 YRLAPLDLEHPETPYTHLRNLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168 Query: 180 DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR +V L H R D + ++A H +P+VAT+ L DVL + Sbjct: 169 DRAWVALTLHARAMDDIHRGVIERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V + + P+ RS + ALE TV +ARRC+F L P + Sbjct: 229 PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVP 287 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D LR + G R G D + +++ EL +IA M + YFL Sbjct: 288 AGTD----PATYLREQTYIGARRRFPAG------IPVDVQAQIEHELQLIADMHYEAYFL 337 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V D +Q+A++ I GRGS A S Y L +T++DP R S+LFERF++ +R S PD Sbjct: 338 TVYDIVQFAREQGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDI 396 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF +R+ V++Y+ KYG +R A + + ++ALR+ G+AL + + V+R+ K Sbjct: 397 DVDFEHQKREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVERVAKQ 456 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + LQ A+ P + + +L G RH S H+ G VI Sbjct: 457 HHWFDSRADLLQRFAE----AGLDPGAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 L++LVP+ D + Q++ IE G++K D L L L++++++LD + +RG + Sbjct: 513 LTRLVPVENAAMEDRSIIQWDKDDIEALGILKVDCLALGMLSMVRRALDMISEKRGETFE 572 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP +D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ Sbjct: 573 LQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632 Query: 658 IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ + + E + ++ L T GV I+QEQVMQ+A L +G+S EAD LRR Sbjct: 633 GMVHPFLRRRQGLEPVTFPSESMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692 Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM K ++ ER +SG + G + A +IF + F +YGF +SHAA++A++ Y Sbjct: 693 AMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +AW++ H P FLAA + + + QDAR+ ++++P VN D + Sbjct: 753 SSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSTIEGPT 812 Query: 835 ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + + ++G+ A I A A +PF + D R +L+R L+ L A A Sbjct: 813 TSAPVRLGFSLLRGMREDVAGRIELARAARPFVDVADLARRA---RLDRHDLQVLARANA 869 Query: 891 LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 L G +R A ++ + + + + Sbjct: 870 LRSLAGGNRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEG 913 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + R +GF HPL + + L ++ E+ G R +V +Q+ T Sbjct: 914 HEIVTDYRAMGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGT 973 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + + +P Sbjct: 974 ANG--VLFMTLEDETGQVNVILWP 995 >gi|308049973|ref|YP_003913539.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] gi|307632163|gb|ADN76465.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799] Length = 1021 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 258/1032 (25%), Positives = 452/1032 (43%), Gaps = 83/1032 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L+ S+YS L+GA + ++ + A A+A+TD +L ++ A +AG++ I Sbjct: 8 FAQLRSASNYSFLQGASHPDELVQQAAELGYDALALTDECSLAGVVKAHMAAKSAGLKLI 67 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G + +D ++LL GY L L++ K R Sbjct: 68 VGSEFVLDQD-----------------RLILLAMNRVGYGELSALITLARRRCD-KGQYR 109 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + L ++L ++ A +R + F +R+++ +R Sbjct: 110 LEWDDLTLPNC---LLLWAPAA-----------PTEALERGRWLARRFAERIFLVAERML 155 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248 RG + + LA E+P+VA + + D L + ++ R Sbjct: 156 RGGEGEWLTAQEALARQLEVPMVAADPVRMHEKARQPLLDALTCIRLGCSLEQAGGRLAG 215 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK R+ +V A ++ C F L P + E Sbjct: 216 NAEAYLKPRTRLVQRHRAEWLASTVSLASR--CQFSLDELRYEYPAELVPEGM----SAS 269 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + + G R + + ++L+ E +I + + +FL + D +Q+AK Sbjct: 270 DHLRQETLKGARRRYGE------AVPESVSRQLEQEFALIDELGYHYFFLTIYDIVQFAK 323 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GRGS A SV Y L IT++DP + +LLFERFL+ +R PD D+DF RR+ Sbjct: 324 REAIL-HQGRGSAANSVVCYCLGITEVDPTKVNLLFERFLSRERDEPPDIDVDFEHQRRE 382 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KYG R A T S + K+A+RD+G+ L + ++R + Sbjct: 383 EVIQYIYRKYGRGRAALAATVISYRFKSAMRDLGKVLGIDEGLIERGLR------GVDRR 436 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + ++ L P L+ + ++L G RH S H G VI PLS+LVP+ Sbjct: 437 DPSQPWQAQLAALGLTGPRALLLIRLVEQLLGFPRHLSQHVGGFVISAGPLSELVPVENA 496 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607 ++ V Q++ +E GL+K D L L L+ +++ L + RG + L+ + DD Sbjct: 497 AMAERTVIQWDKDDLEALGLLKVDILALGMLSAIRRCLQSVGQWRGQPMALADVVADDPA 556 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 Y +L ++G+FQ+ES L ++P D++ +++ RPGPI +V+ R+ Sbjct: 557 VYDMLCRADSVGVFQIESRAQSNMLPRLRPRSYYDLVVQIAIVRPGPIQGDMVHPYLKRR 616 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 +G E + + +L+ T GV I+QEQV+++A + +G+S EAD LRRAM + Sbjct: 617 HGLEPVSYPSEAVREVLERTLGVPIFQEQVIKLAMVAAGFSGGEADKLRRAMASWKRHGE 676 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +K + + G ++ G S A IF + F +YGF +SH+A++A+++Y +AW+K HYP Sbjct: 677 LEKFERKLKQGMAERGYSAEFADQIFRQIRGFGEYGFPESHSASFALLAYASAWLKYHYP 736 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLA 840 V F A + + + QD ++ N Q++P SVN D +V + L Sbjct: 737 VAFTCALLNSQPMGFYTPSQLVQDLQRHNGQVLPLSVNHSQWDHQVEAVQGQMALRLGLR 796 Query: 841 AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900 +KG+ ++ + F S+ V +L+R LE+L A AL R Q Sbjct: 797 LVKGLSRQAVETLLAVRPEGGFSSVHQL---VSLARLDRGALEALASADALAELAGHRHQ 853 Query: 901 LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960 L + +FA + T ++ + + + + G Sbjct: 854 ARWLLAG------------EAQQLPLFAELEPTTDVTLSGP-----DEAEGIVADYQQTG 896 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020 HPL + + + + ++ G ++LA +VV +Q+ T G + ++T Sbjct: 897 LSLGRHPLSLLREQGQLARCLTAAQLLSCQHGQLVQLAGLVVGRQRPGTASG--VTFITL 954 Query: 1021 SEPAKEYEANFF 1032 + + Sbjct: 955 EDETGNANVVVW 966 >gi|302335488|ref|YP_003800695.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084] gi|301319328|gb|ADK67815.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084] Length = 1302 Score = 592 bits (1526), Expect = e-166, Method: Composition-based stats. Identities = 327/1050 (31%), Positives = 503/1050 (47%), Gaps = 92/1050 (8%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC+ D ++ + + ++LL GY LI+ +S+ + Sbjct: 126 IKPIFGCEAYFITDDCIERGTKQRR-----YHLILLAKNERGYVNLIKCMSQAAGHEMMY 180 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R L L+ EGLI + G I + + A + TF+ +FGD Y+ + Sbjct: 181 YKPRTTLDMLKRYH-EGLICQSACVQGIIQQRVIEGDVEGARQWARTFQDVFGDDFYMEI 239 Query: 187 QRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 Q H DR + ++++A + +V TN+ +L+ ED D+L + +T + Sbjct: 240 QDHGLEFPNGWNDRKLDEYLIKIADELGVKVVCTNDIHYLTREDASTQDILSCIGKATTI 299 Query: 241 SQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 R R+ + E + FS P+A +NT+E+A +C + L ++ LP F Sbjct: 300 DDNSRMRMEGTEFYMKSEEEMRQLFSWYPQACDNTLEVADKCDYELDWNSMYLPEFP--- 356 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + E R + GL R +G + R R + E +I F+ YFLI Sbjct: 357 GLRKGETAEERFREECERGLAKRYGEGWRDLEIGGWNVRDRFEHEYKIITEKGFANYFLI 416 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D++QWAK N I VGPGRGS AG++ AYA+ IT+ DPL L+FERFL+P R MPD D Sbjct: 417 VQDYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRSEMPDID 476 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF + V+++V++ YG +RV ++IT+ +++AK A+ D R L P RL K++ Sbjct: 477 MDFDDEHLQMVLQHVRDVYGEDRVCKVITYSTIKAKQAINDANRVLGFPVYMGQRLSKML 536 Query: 480 PNDPAHPVSLQAIADD-------SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532 NDP + ++ F EA D R+++ + +EG R HA Sbjct: 537 SNDPKLTLPNALHKNEKKPDQYSPDFEEAYNKDADAHRIIDAALSIEGFMRGEGVHACAT 596 Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591 +I P++ VP D + ++ +TQ+ + GL+K DFLGL+TLT++ K+L+ + + Sbjct: 597 LIAPTPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALENIRRS 656 Query: 592 ----------------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629 V +D+ F D Y LL + T G+FQ+ES+GM Sbjct: 657 YPDLSRADELPEQVRSAIKPGATCVDLDVDKCDFSDPAIYELLGSGHTAGVFQVESAGMT 716 Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687 ++GMQP + I+AL++LYRPGP+ +V Y NR NGKE +V + +L ET G Sbjct: 717 ATIKGMQPTEYKHIVALIALYRPGPLGAGMVTSYINRMNGKEPVVFYDDRLSDILDETYG 776 Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRR--------AMGKKIKEEM------DKQKERFI 733 ++YQEQVMQI+ +S +S E+D R M + + ++ Sbjct: 777 TMVYQEQVMQISMKMSNFSPGESDGRIRKPVAKKKIKMLTSQVFHWEGDGADETIYDHWM 836 Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793 +GA NG + +A I++ + +FA Y FNKSH+A YA++ QTAW+K+H+P EF+A+ +T Sbjct: 837 NGALGNGYQRDVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKSHFPREFMASVLT 896 Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853 M +KI + R+ I ++PP VN DF + + A I+GVG I Sbjct: 897 SYMGKTDKIVHYVTSCRREGIDVLPPDVNESGKDFTATPQGVRFGFAGIRGVGDGVGEAI 956 Query: 854 MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN----- 907 M A PF SL DFC RVD + NRRV+E+L+ +GA D GY R QL+ +D Sbjct: 957 MAEREARGPFKSLHDFCERVDGSQANRRVVEALIKSGAFDSTGYPRKQLMGFVDKNDPAN 1016 Query: 908 IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKF-SVENSSVRFENEQRVLGFY 962 I A +K++ N ++F F D I + + + E VLG Y Sbjct: 1017 IIDAAAKRQKDKANGQVSMFDMFADVAGAGFEDDIPEPNPHDEWDRNTKLAQEHEVLGIY 1076 Query: 963 FSGHPLDVYKPILRKMGIKGYEESV-----------------ATIRGNNIRLAAM--VVS 1003 S HPL Y+ + K E G IRLA M V Sbjct: 1077 VSDHPLRPYEYAISKARDYTLSEIEESEEVVDPVSGAATTRYKVPEGKPIRLAGMVPVGG 1136 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +K T+KG ++ VT + E FP Sbjct: 1137 VVKKVTKKGDQMAIVTLEDMEGEVTLVVFP 1166 Score = 95.6 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +FVHL HS +S+L+GA + +++ + + PA+A+TD LF + + Sbjct: 2 AFVHLHNHSDFSILDGATPVESLVKRAVDLKMPAVALTDHGYLFGVPNLDLECRSYN 58 >gi|118616689|ref|YP_905021.1| error-prone DNA polymerase [Mycobacterium ulcerans Agy99] gi|118568799|gb|ABL03550.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium ulcerans Agy99] Length = 1088 Score = 592 bits (1526), Expect = e-166, Method: Composition-based stats. Identities = 279/1038 (26%), Positives = 488/1038 (47%), Gaps = 59/1038 (5%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 S ++ L HS+YS L+GA + ++++ A A+A+TD N L+ A+ F++ A G Sbjct: 48 SSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASGLG 107 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ + G +L + + + + P P P +++L EGY+RL ++ +L K Sbjct: 108 VRTVFGAELSLGPE------ARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185 R L E +LTG G + +A AE+ L F R+ V Sbjct: 162 GKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERVLADLVDRFTAGRVSVE 221 Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L H D + + LA + +VAT + F + A+ + Sbjct: 222 LTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDSAA 281 Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 +L++ +EM +F+ P+ + E+ +C+F L + AP LP F + Sbjct: 282 GWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 338 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 E++ LR+ ++G R G+ + A+ +++ EL VIA++ F GYFL+V D Sbjct: 339 -HTEDSWLRSLVMSGARERY--GSTERSPRARKAYAQIEHELKVIAQLSFPGYFLVVHDI 395 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 Q+ ++N+I GRGS A S YAL +T +DP+ LLFERFL+P+R PD DID Sbjct: 396 TQFCRRNDIL-CQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDIDIE 454 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 D+R++VI+YV NKYG + AQ+ + + ++A+RD+ RAL Q D K I + Sbjct: 455 SDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGHWN 514 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 A ++ I + ++++++ ++ L RH H+ G+VI DRP++ + Sbjct: 515 ATLDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRPIADVC 559 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602 P+ +D V Q++ GL+KFD LGL L+ L + D +A+ ++VDL+ + Sbjct: 560 PVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLARLD 619 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 620 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 679 Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719 Y R++G + +V HP ++ L++T GV ++QEQ+MQ+A +G+S +EAD LRRA+ K Sbjct: 680 YIRRRSGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIGSK 739 Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + E M + + RF G +G + I+E L FA++GF +SHA ++A + + ++W Sbjct: 740 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSSW 799 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836 K H+P F AA + + + DAR+ + + P VN + ++ Sbjct: 800 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQVR 859 Query: 837 YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L A++ +G A ++ + PF SL + SRV +L+ E+L GAL CFG Sbjct: 860 LGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATTGALGCFG 916 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 SR + T + + + + + + ++ Sbjct: 917 MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPTLPGMSELELAASD 961 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G +P + L +G+ ++ G + +A V +Q+ T +G + Sbjct: 962 VWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATAQG--V 1019 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1020 TFINLEDETGMVNVLCTP 1037 >gi|254482564|ref|ZP_05095803.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214037255|gb|EEB77923.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 1031 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 266/1039 (25%), Positives = 451/1039 (43%), Gaps = 74/1039 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + L S YS L A + ++++ A A+AITD +L ++ A Sbjct: 1 MSN---YSELHCLSCYSFLRSASHPHELVERAAQLGYGALAITDECSLAGVVKAHVAAKE 57 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG++ IIG + ++ +V L + Y L L+S Sbjct: 58 AGLKLIIGSEFKLE----------------EGIRLVALAPSRAAYSELSGLISMARRRS- 100 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K R L + L++ ++ + +L +R+++ Sbjct: 101 PKGEYRANLRDVIFHLKRCLLI-----------WLPRDNDDHDKAYGQQLARLCKNRIWL 149 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + G D R LA +PLVA + HDV A+ ++T V+Q Sbjct: 150 GVSHLLGNDEARHFENTSALATALNIPLVACGDVRMHLASRKPLHDVFTALHYNTSVAQL 209 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 R R+ RS PE + T I RC+F L P + + Sbjct: 210 GRRRLGNS-QQHLRSLERIHQLYPPELILETERIVSRCNFSLDELRYEYPEEVVPQG--- 265 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR G + R G + +QR+D EL +I + + YFL V D Sbjct: 266 -HSANSYLRQLVDEGSKRRWPTG------TPEPVQQRIDRELELIDELNYEYYFLTVYDI 318 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+ +I GRGS A SV Y L IT++ P + SLLFERF++ +R PD D+DF Sbjct: 319 VDFARSRDIL-CQGRGSAANSVVCYCLGITEVSPEQISLLFERFISKERDEPPDIDVDFE 377 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI+Y+ KY R A T + ++++A+RDVG+AL + VD L K + Sbjct: 378 HERREEVIQYIYRKYSRRRAALAATLITYRSRSAVRDVGKALGLDPVFVDDLAKSLAWWD 437 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + + + D + Q++ G RH S H G VI P+S LV Sbjct: 438 RTADLSKRFEE----QGVAGHSQQADLFYNLVQQILGFPRHLSQHVGGFVITRSPISTLV 493 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602 P+ ++ V Q++ + IE GL+K D L L L+ ++KSL + + +S IP Sbjct: 494 PVENASMAERTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLQMVHRYNPAIATVSDIP 553 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D TY +L T G+FQ+ES L ++P+C D++ +++ RPGPI +V+ Sbjct: 554 KEDAATYQMLQQADTTGVFQIESRAQMSMLPRLKPECFYDLVIQIAIVRPGPIQGDMVHP 613 Query: 663 --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 RK G E I I +L+ T GV I+QEQV+++A + +G+S EAD LRRA+ Sbjct: 614 YLRRKQGLEVITYPSEEIKGVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAIANW 673 Query: 721 IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + +++ G + G + A +F+ + FA YGF +SH+A++A+++Y ++W+ Sbjct: 674 GRNSKLLGFEQKLTQGMIERGYDEDFARRLFDQIKGFAGYGFPESHSASFALLAYISSWL 733 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834 K H+P F A + + + QDAR+ + +P VN D ++ D Sbjct: 734 KRHHPAAFFAGLLNSQPMGFYSASQLLQDARRHGVVALPIDVNQSDWDHQLLDQHRGTNK 793 Query: 835 -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L +KG+ A+ ++E PF + D R +L++R +E+L A AL Sbjct: 794 PVRLGLRLVKGLSRGGAQRVVEGRQQSPFRQISDLRRRA---QLDKRDMEALADADALVS 850 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R Q + +++ ++ + F+DK+ L +V + Sbjct: 851 LSGHRHQSQWQIMALEEARPLLQDEQFQN--------AHYFNDKVQLPAPAV---AEEVL 899 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 ++ R G HPL + + K + +R+A +V +Q+ + G Sbjct: 900 SDYRATGLTLRAHPLSLLRDQAPFNRCKKQVDLPHLGNHRFVRIAGLVTCRQRPGSASG- 958 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 + ++T + + Sbjct: 959 -VLFLTLEDETGNSNVVVW 976 >gi|148243808|ref|YP_001220047.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5] gi|146400371|gb|ABQ28905.1| error-prone DNA polymerase, DnaE-like [Acidiphilium cryptum JF-5] Length = 1082 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 280/1048 (26%), Positives = 456/1048 (43%), Gaps = 79/1048 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++V L S +S L GA S + + + A A+AITD N L + A A Sbjct: 1 MSTDTAYVELHCTSHFSFLRGASSCDELFAQAAHLGLEALAITDRNTLAGIVRAHVAAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 ++ I+GC+LD+ +++ + Y RL L+S Sbjct: 61 NDMRLIVGCRLDLTDGTA----------------LLVYPTDRPAYARLSRLLSLGKQRGG 104 Query: 125 GKQSVRICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 K R+ S L EGLI +L G + + L + FGDR Y Sbjct: 105 -KAQCRLDWSDLVAY-AEGLIGVLVPGEA-----------DDACVRNLRRLAQSFGDRAY 151 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R R D R ++ LA ++P V TN+ LF + + DV+ + H + Sbjct: 152 LALTLRRRPNDALRLFELSNLAARAKVPTVVTNDVLFHARDRRILQDVVTCIRHGCTIDD 211 Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R D YLK +EM +FS PEAL T EIA RC F L P Sbjct: 212 AGFRRERHADRYLKPPAEMHRLFSRYPEALARTQEIADRCLFSLDELRYQYPDENVLPG- 270 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L G R G A + L EL +I + ++ YFL V Sbjct: 271 ---LTTQEALTQLTWEGAAQRYPAGVPA------EVVTILRHELRLIETLDYAPYFLTVN 321 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 +++A+ I GRGS A S + L IT IDP R LLFERF++ +R PD D+D Sbjct: 322 SIVRFARSQGIL-CQGRGSAANSAVCFVLGITSIDPERNDLLFERFISEERREPPDIDVD 380 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR+ V+++V + YG + A T + K ALRDVG+AL +P + L + Sbjct: 381 FEHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLITALNAQVWG 440 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + A+ L D + ++++++L G RH S H G V+ L + Sbjct: 441 WSEGGIEPKHAAE----LHLNLEDRRLKLAIDLARELIGTPRHLSQHPGGFVLTRDRLDE 496 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600 LVP+ + + +++ I+ +K D L L L+ +++ D LAQ DL+ Sbjct: 497 LVPIEPAAMDNRQIIEWDKDDIDALKFMKVDCLALGMLSCMKRGFDLLAQHKGIELDLAT 556 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V Sbjct: 557 IPAEDPHTYAMIRRADTLGTFQIESRAQMVMLPRMKPRTFYDLVIEVAIVRPGPIQGDMV 616 Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R+ GKE +V P ++ +L +T GV ++QEQ M++A +G++ +EAD LRR+M Sbjct: 617 HPYLRRREGKEAVVYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTATEADQLRRSMA 676 Query: 719 KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + +++ +SG NG + A F L F YGF +SHAA++A+I+Y ++ Sbjct: 677 TFKFTGGVSHFRDKLVSGMVANGYEQEFAERTFSQLEGFGSYGFPESHAASFALIAYASS 736 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833 W+K H+P F AA + + + +DA+ ++I P VN D + Sbjct: 737 WLKCHHPDVFCAALLNAQPMGFYAPAQIVRDAKDHGVEIRPVCVNASRWDCTLEPTHDES 796 Query: 834 --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + L +KGV ++ A A+ F S++D R + L + A A Sbjct: 797 RLAVRLGLRMVKGVANPHVAKMIAARANHLFASVDDLWRRA---GVPTAALVQMAEADAF 853 Query: 892 -DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 +R L ++ ++ A +FA ++ + V Sbjct: 854 LPSLKLARRDALWAIKALRDEA-----------LPLFAAVANRTEQPVSELQEPVFALKP 902 Query: 951 -----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + LG HP+ + LR+ I ++ ++T G + A +V+ +Q Sbjct: 903 LTGGGEVVEDYVHLGLSLRSHPVAYLREDLRRERIVSCDQVMSTRDGKFLETAGIVLVRQ 962 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + + +G + ++T + +P Sbjct: 963 RPGSARG--VMFITIEDETGIANLVIWP 988 >gi|332041001|gb|EGI77369.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624] Length = 1083 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 270/1056 (25%), Positives = 447/1056 (42%), Gaps = 83/1056 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S++S GA S ++ + A A+AITD ++ + +A G+ Sbjct: 24 PAYAELHCLSNFSFQRGASSAEELVARAHALGYSALAITDECSMAGVVRAHVEAQKLGLS 83 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-------- 120 +IG +L +++ D T ++VLL + GY +L EL+++ Sbjct: 84 LLIGTELRVNVDD------------QTHFTLVLLARSRVGYGQLCELITQARGHTVTARE 131 Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180 + R+ L+ E L +L G A + + +L + F Sbjct: 132 RERGLRYQQRMDGWPLELDRHELLALLVPQRDGLQPEA--PGFAARLDAQLQWLRARFAP 189 Query: 181 RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 ++ ++ H D ++ +PLVA DV+ A+ Sbjct: 190 HGWLAVELLHGLDDERWLRELQAAGARCGVPLVAAGGVHMHVRSRKPLQDVMTAIRLGRP 249 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 V + + P+ RS L TV +A C F L P + Sbjct: 250 V-AECGFELQPNAEAHLRSRQRLAALYPAALLAETVRLAGLCHFSLDELKYEYPEEVVPA 308 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + LR + G + R QG R++++ EL +I+ +++ YFL Sbjct: 309 GE----TPASYLRRATLEGAQTRYPQGV------PTAVRRQIEHELALISELRYEKYFLT 358 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D ++ A+ I GRGS A SV Y L +T++DP R S+LFERF++ +R PD D Sbjct: 359 VYDIVRHARDEKIL-CQGRGSAANSVVCYCLGVTEVDPARTSVLFERFISKERNEPPDID 417 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF RR+EVI+Y+ KYG R A + A+ A+RDVG+AL + +D L K Sbjct: 418 VDFEHQRREEVIQYLYTKYGRGRAALTAAVHTYHARGAIRDVGKALGLDEDLIDALAKAH 477 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 V+ + + S + P L + L G RH S H+ G V+ L Sbjct: 478 QWWDGREVNRERL---SALGVEVDSRPIRLLLELT-RPLLGFPRHLSQHSGGFVLTGDKL 533 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598 ++ VP+ +++ I+ GL+K D L L L+ ++++LDF++Q RG L Sbjct: 534 TRTVPVVPAAMEGRTTIEWDKDDIDALGLLKVDVLALGMLSAIRRTLDFVSQWRGRPFRL 593 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP +D +TY ++ +G+FQ+ES L ++P C D++ V++ RPGPI Sbjct: 594 QDIPPEDPQTYEMICRADVVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGG 653 Query: 659 VVYNNRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +V+ + + + + + P L T GV I+QEQVMQIA + +G++ EAD L Sbjct: 654 MVHPFLEQRERQRRGEPLALPNEALRPALARTLGVPIFQEQVMQIAIIAAGFTPGEADQL 713 Query: 714 RRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 RRAM K +DK ++R I G + G + A IF + F +YGF +SHAA++A++ Sbjct: 714 RRAMAAWRRKGGVDKFQQRLIEGMTARGYEREFAEAIFRQIEGFGEYGFPESHAASFALL 773 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--- 829 Y +AW+K H P FLA + + QDA++ + + P V D Sbjct: 774 VYSSAWLKRHEPAAFLAGLLNSLPMGFYGPSQLVQDAQRHCVTVRPVDVLHSEWDCTLER 833 Query: 830 -------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + L + G+ A I+ A A P + ED R Sbjct: 834 EEGYEGDEGEHRPATRAAVRLGLRLVAGLKQERAHRIVAARAQGPLLNTEDLALRAGLDA 893 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 L+ L +L A AL R Q + + + G Sbjct: 894 LD---LNALASADALMGLSGHRRQQVWDASALHAAPALLR---------------GAPVH 935 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 + TL + LG HPL + +P L ++G++ ++ +A G R Sbjct: 936 EPTL-ALPAAPEGEEIVFDYAALGLTLRRHPLALLRPRLSRLGVQTAQDLLAWPDGRPAR 994 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +V+++QQ T KG + +VT + + + Sbjct: 995 ACGLVLARQQPGTAKG--VVFVTLEDETGSVQVIVW 1028 >gi|295676323|ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] gi|295436166|gb|ADG15336.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002] Length = 1049 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 265/1038 (25%), Positives = 449/1038 (43%), Gaps = 64/1038 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S+++ L GA + + A A+AITD +L + A A + Sbjct: 9 PAYAELFCFSNFTFLRGASHAEELAQRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + D ++LL GY L EL++ + K Sbjct: 69 FIVGSYFRLVNADG-----------SPAFGLILLARNRNGYGNLSELITLARMR-APKGE 116 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L+ + + + F S + ++ + F R +V L Sbjct: 117 YRLTPQDLSRPEKEYRHLLGMPDCLAILVPD--FPASEDALDAQVEWLDETFTGRAWVGL 174 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V +A + ++P+VA + D + A+ V + Sbjct: 175 VLHQRAMDDMHRGAVEFVAKSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPV-HECG 233 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + +AL TV+I RC+F L P + Sbjct: 234 YDLAPNAEQHLRSRLRLANLYPEDALAATVDIMSRCTFSLDELRYEYPDELVPAG----H 289 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + LR + G + R G +Q+++ EL +IA +++ YFL V D ++ Sbjct: 290 TPASYLRQETYIGAQRRFPAG------IPHHVQQQIEHELELIADLQYEPYFLTVYDIVR 343 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A S Y L +T++DP R ++LFERF++ +R PD D+DF Sbjct: 344 FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYG +R A + + + ALR+ G+AL + VD + K Sbjct: 403 RREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDAVAKSHHWFDTS 462 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L A+ P + +++ +L RH S H+ G VI L++LVP+ Sbjct: 463 RDLLARFAES----GLDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPV 518 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604 +D V +++ +E GL+K D L L L+ ++++LD QRG + ++ IP + Sbjct: 519 ENAAMADRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPSE 578 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +++ T+G+FQ+ES L M+P D++ V++ RPGPI V+ Sbjct: 579 DPATYAMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGGAVHPYL 638 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + + L T GV I+QEQVMQ+A L +G++ EAD LRRAM Sbjct: 639 QRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++K +R + G + G + A IFE + F +YGF +SHAA++A++ Y ++W+K Sbjct: 699 KGGLEKYYDRIVLGMQERGYDQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835 H P FLAA + + + QDA++ + ++P V + + + Sbjct: 759 HEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVTVLPVDVTVSGWNSSLEPRAGAMRPAV 818 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L+ ++G+ A I A A +PF S+ D R +L+R+ L +L A AL Sbjct: 819 RLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLDRKDLHALADANALAALA 875 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L ++ + + + + + Sbjct: 876 GNRREALWQ--SVVAVPDKDMLAAAATQD--------------ETPELGAPSEAHDIVAD 919 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 R LG + HPL++ +P L + G R +V +Q+ T KG + Sbjct: 920 YRSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRHGRLARGCGLVTVRQRPGTAKG--V 977 Query: 1016 GWVTFSEPAKEYEANFFP 1033 +VT + +P Sbjct: 978 VFVTLEDETGNVNVIIWP 995 >gi|92119219|ref|YP_578948.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14] gi|91802113|gb|ABE64488.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter hamburgensis X14] Length = 1087 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 280/1039 (26%), Positives = 460/1039 (44%), Gaps = 68/1039 (6%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 + + LQV S +S L GA S + A+ A+AI D N+L + + A G+ Sbjct: 2 TSRYAELQVTSHFSFLRGASSCEELFAHAASLGIEALAIVDHNSLAGIVRAHEAAKVTGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 + I+GC+LD+ S+++ + Y RL L+S K Sbjct: 62 RLIVGCRLDLADGM----------------SVLVYPTDRPAYSRLCRLLSIGKTRGG-KA 104 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNL 186 + + + +EGLI A + + A +R+ + FGDR ++ L Sbjct: 105 KCILNWEDVVDW-SEGLIA-----------ALVPDVADDACAQRIRRLRDTFGDRAHMAL 152 Query: 187 Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKD 244 R R D+ R ++ +A + V TN+ LF DV+ + H+ T+ Sbjct: 153 TLRRRPNDQMRIHELNNMAQRFRVATVVTNDVLFHEPARRILQDVVTCIRHNVTIDEAGF 212 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R D YLK EM +F+ PEAL TV IA RC+F + A P Sbjct: 213 RRERHADRYLKPPDEMTRLFARYPEALARTVAIAGRCTFSMDELAYQYPEERTMPG---- 268 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L G R +G + R L+ EL +I R++++ YFL V + Sbjct: 269 LTPQQALEKLTWEGAAERYPEGL------PDEVRPTLEHELRLIERLQYAPYFLTVNSIV 322 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ +I GRGS A S Y L IT IDP R LLFERF++ +R PD D+DF Sbjct: 323 RFARSRDIL-CQGRGSAANSAVCYVLGITSIDPERNDLLFERFVSEERREPPDIDVDFEH 381 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+ V+++V YG A T +AK ALRDVG+AL + + L I Sbjct: 382 ERREIVMQWVFETYGRNHAALCSTVIRYRAKGALRDVGKALGLTEDLIKLLSSQIWGWSE 441 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 V + + L D + + ++++L G RH S H G V+ L +LVP Sbjct: 442 EGVEPKHAEE----LNLNLDDRRLKLAIVLARELIGTPRHLSQHPGGFVLTHDRLDELVP 497 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603 + + V +++ I+ +K D L L LT ++++ +G ++DL+ IP Sbjct: 498 IEPAAMPNRQVIEWDKDDIDALKFMKVDCLALGMLTCMKRAFNFLAEAKGTELDLATIPS 557 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 +D TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 558 EDPRTYAMIRKADTLGTFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVHPY 617 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ GKE +V P ++ +L +T GV ++QEQ M++A +G++ EAD LRRAM Sbjct: 618 LRRREGKEPVVFPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRAMATFK 677 Query: 722 KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + K K++ I+G G + A F L F YGF +SHAA++A+I+Y ++WMK Sbjct: 678 FTGGVSKFKDKLINGMVDRGYDREFAEKTFSQLEGFGSYGFPESHAASFALIAYASSWMK 737 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRI 835 +P F AA + + + +DAR +++ P +N D + + Sbjct: 738 CWHPDVFCAALLNAQPMGFYAPAQIVRDARDHGVEVRPVCINASRWDCTLEPINDDGFAV 797 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894 I+G+ I+ A AD+PF+S++D R D + L L A A++ Sbjct: 798 RLGFRLIRGLSNKNGAEIVAARADQPFESVDDLWRRAD---IPVASLVQLAKADAMNESL 854 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G +R + L +L ++ + T + + + + S Sbjct: 855 GLARREALWALKALRDEPLELFAAATQR------EARTIEEVREPAVSLRLMTSGGEVVE 908 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + R +G HP + L I +++ G + A +V+ +Q+ + KG Sbjct: 909 DYRHVGLTLRQHPASFLRADLSSRRIVTCADAMNACDGKWLTTAGLVLVRQKPGSAKG-- 966 Query: 1015 IGWVTFSEPAKEYEANFFP 1033 + ++T + +P Sbjct: 967 VMFITIEDETGVANLVIWP 985 >gi|162148659|ref|YP_001603120.1| putative DNA polymerase III alpha subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161787236|emb|CAP56829.1| putative DNA polymerase III alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1055 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 279/1044 (26%), Positives = 467/1044 (44%), Gaps = 75/1044 (7%) Query: 5 LE-KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + +P + LQV S +S L G S + + A A+ ITD N+L ++ A Sbjct: 1 MSGSAPRYAELQVTSYFSFLRGVSSPGELFGQAKALGISALGITDRNSLAGMVQAHLAAR 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 A+G++ I+GC+LD++ P +++ + Y L L++ Sbjct: 61 ASGVRLIVGCRLDLED----------------APPVLVYPTDRAAYGNLCRLLTLGKAR- 103 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 GK R+ L G EGL+ + + + L + FGDR Y Sbjct: 104 AGKGKCRLLWRDLVAWG-EGLLAV----------LVSDVADEECAAHLRRLRDAFGDRAY 152 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + L R R D+ R ++V LA+ + V TN+ LF + + DV+ V H+T + Sbjct: 153 MALTLRRRPNDQIRLYELVNLAHAQRVKTVVTNDVLFHTHDRRILQDVVTCVRHNTTIEH 212 Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 R D YLK +EM +F+ PEA++ T+EI RC F L A E + Sbjct: 213 AGFARERHADRYLKPPAEMARLFARYPEAIDRTMEIVARCRFSLDDLAY----QYPDEIE 268 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + L G D L EL +I RM+++ YFL V Sbjct: 269 IPGQTPQQALEALTWQAARETYG------GIIPPDVEMVLRHELALIGRMEYAPYFLTVH 322 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 ++ AK+ +I GRGS A S + L IT IDP R +LLFERF++ +R PD D+D Sbjct: 323 SIVREAKRRDIL-CQGRGSAANSAVCFVLGITAIDPSRTTLLFERFISEERGEPPDIDVD 381 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RR+E+I++V + YG +R A +AK ALRDVG+ + +P + L + I Sbjct: 382 FEHARREEIIQWVYDHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDVIALLSRQIWG 441 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 H + + R+ L++++ L G+ RH S H G V+ L + Sbjct: 442 WSHHVDPEKFAGTGIDLTDRRIRLT-----LDLARCLIGVPRHLSQHPGGFVLTRDRLDE 496 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 LVP+ D + +++ I+ +K D L L LT ++K LD LA L Sbjct: 497 LVPIEPAAMEDRQIIEWDKDDIDALKFMKVDILALGMLTCMKKGLDLLAAHKGQHFTLQT 556 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P +D TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V Sbjct: 557 VPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRTYYDLVIEVAIVRPGPIQGDMV 616 Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R+ G E+ P ++ +LK T GV ++QEQVMQ+A + + ++ +EAD LRRAM Sbjct: 617 HPYLRRREGLEEPDYPTPELEEVLKRTLGVPLFQEQVMQVAMVCADFTAAEADGLRRAMA 676 Query: 719 KK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + + R + G ++ G + A I++ L F YGF +SHAA++A+++Y ++ Sbjct: 677 TFKNTGTVSHFQTRLLEGMTRKGYPEEFAQRIYQQLEGFGSYGFPESHAASFAILAYTSS 736 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833 W+K H+P FLAA + + + +DAR+ +++ P +N D + Sbjct: 737 WLKCHHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEVRPVCINASRWDSTLEGEDDDR 796 Query: 834 ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + ++ +KG+ A + A +PF S++D R + + L L A A Sbjct: 797 GCFAVRVGMSLVKGLANAHAAALAAARLRRPFASIDDLWRRA---GVPQEALVRLAEADA 853 Query: 891 LD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 FG +R + L ++ + +FA + + + Sbjct: 854 FRPAFGLARREALWAIKGLHDE-----------PLPLFAAAAQSRETEEPAMALAPMTDG 902 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + LG GHP+ + LR+ I ++A G + A +V+ +Q+ + Sbjct: 903 AEVVGDYNHLGLSLRGHPVSFLREDLRQRRIVPCGTAMALRDGKRVEAAGLVLVRQRPGS 962 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 963 --GEGVCFITLEDETGIANLVIWP 984 >gi|296136343|ref|YP_003643585.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] gi|295796465|gb|ADG31255.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12] Length = 1037 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 270/1037 (26%), Positives = 459/1037 (44%), Gaps = 64/1037 (6%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 ++ P +V L S++S L GA ++++ +A+TD +L + A A Sbjct: 1 MDPLPDYVELHCRSNFSFLTGASHPEELVERAHELHYAGLALTDECSLAGIVRAHGAAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 AG+ ++G Q ++ + + ++V+L GY L E ++R+ Sbjct: 61 AGLPLLVGVQFAVEGDEKTRTPP---------FTLVVLACNLNGYGNLCEFITRLRRAS- 110 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K S R+ + ++L S + + F R+++ Sbjct: 111 PKGSYRLDRQSITGETLADCVVLAVPS--------RQATDAGLLELGAWLLARFTGRVWL 162 Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 ++ HR D R ++ LA +PLVA + D L A+ ++ Sbjct: 163 AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLGRPIADC 222 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303 RS + + E L T+ +A RC F L P+ + + Sbjct: 223 GHALQPNA-ERHLRSRLRLALTYPAELLAETLRVAARCRFSLDELRYRYPKEVIPAGE-- 279 Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363 + LR + G R G A + L+ EL +IA + ++ YFL V D Sbjct: 280 --TADGYLRRRVYEGAGRRWPDGLHA------KVQDLLEHELALIAELGYAHYFLTVDDI 331 Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423 + +A+ +I GRGS A S YAL IT++DP + +LFERF++ +R PD D+DF Sbjct: 332 VAFARSRHIL-CQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDFE 390 Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483 +RR+EVI+Y+ KYG +R A + K+ALRDVG+AL VDRL + + Sbjct: 391 HERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVDRLARNVHWWD 450 Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 V+ + + + V + + + ++L G RH S H G V+ + PLS+LV Sbjct: 451 GREVARERLEEV----GLDPDALGVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRLV 506 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602 P+ + V +++ ++ AGL+K D L L LT ++K+LD + Q G + IP Sbjct: 507 PIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSLGQTFAMQDIP 566 Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662 +D +TY +L ++G+FQ+ES + L +QP C D++ ++ RPGPI +V+ Sbjct: 567 REDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVHP 626 Query: 663 NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720 + K +V ++ +L+ T GV ++QEQVMQIA + +G+S EAD LRRAM Sbjct: 627 YLNRRQGKEVVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAAW 686 Query: 721 IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779 + +K ++R I+G ++ G S A +I+E + F++YGF +SHAA++A++ Y +AW+ Sbjct: 687 RRTGSLEKYRDRLIAGMTERGYSADFAQSIYEQVQGFSEYGFPESHAASFALLVYASAWI 746 Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRI 835 K H+P EFL A + + + QDA++ + + P V D + + + Sbjct: 747 KRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEAVPYPAV 806 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L +KG+G I A +P ED R +L+ L L A AL Sbjct: 807 RLGLRLVKGLGREAGLRIAAARMSRPPVDAEDLAKRA---QLDTMALRQLAAADALRSLS 863 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q + +++ + D + L + Sbjct: 864 GHRRQQVWEATAVER-------------MPALLDDAAPQEDWLELPAPPE---GEDIVFD 907 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HPL + +P+L K ++ E G +R +V +QQ +T KG+ Sbjct: 908 YATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGT-- 965 Query: 1016 GWVTFSEPAKEYEANFF 1032 +V+ + + + Sbjct: 966 TFVSLEDETGTVQVICW 982 >gi|301385165|ref|ZP_07233583.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato Max13] Length = 1031 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 264/1037 (25%), Positives = 446/1037 (43%), Gaps = 80/1037 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S GA S + D+ A+AITD L + Q + G+ I Sbjct: 5 YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G ++ ++ P IVLLV GYQ L L++ + K R Sbjct: 65 VGSEMHLENG----------------PKIVLLVEHLTGYQALCTLITVARRRAK-KGEYR 107 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + L + G + ++ F +RL++ ++ HR Sbjct: 108 LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248 G D R + ++ LA + +P VA+ + + D + A+ H T V Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + +L++ + + D A ++ IARRC+F P + + + Sbjct: 219 NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR G+ R +G R +++ EL +I KF YFL V D +++A+ Sbjct: 273 SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S YAL IT+++P + +LLFERF++ +R PD D+DF DRR+ Sbjct: 327 SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ +YG R A + ALRDV + L +P Q++ L S Sbjct: 386 EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + P + R+L ++ +L G RH S H G VI + PL LVP+ Sbjct: 446 PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 ++ + Q++ ++ GL+K D L L L+ L+++ D + RG + L+ +P DD Sbjct: 502 AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +++ T+G+FQ+ES L ++P+ D++ V++ RPGPI +V+ R+ Sbjct: 562 TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 N +E I P + + + T GV ++QEQVM++A + + Y+ EAD LRRAM + Sbjct: 622 NNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 D +ER +G NG A IFE + F YGF +SHAA++A+++Y + W+K H P Sbjct: 681 LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835 F A + + QDAR+ +I+I V D + + I Sbjct: 741 AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNLAI 800 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 L ++ A I A + +PF D R L+ R E+L +GAL Sbjct: 801 RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + + + +F + + + Sbjct: 858 GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 LG HPL + + L + ++ +A + +A +V+ +Q+ T G + Sbjct: 902 YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG--V 959 Query: 1016 GWVTFSEPAKEYEANFF 1032 +VT + + Sbjct: 960 TFVTLEDEFGMVNVVVW 976 >gi|206479930|ref|YP_002235441.1| putative DNA polymerase subunit alpha [Burkholderia cenocepacia J2315] gi|195945086|emb|CAR57711.1| putative DNA polymerase alpha subunit [Burkholderia cenocepacia J2315] Length = 1049 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 282/1037 (27%), Positives = 462/1037 (44%), Gaps = 63/1037 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A +A + Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKSANMP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L E +S + + K S Sbjct: 70 LIIGSHFQLTAADGSSALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGS 117 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ + E L L + I F + Q + ++ F ++FGDR ++ L Sbjct: 118 YRLAPLDVDHPEAPYAHLRGLPDCLA--ILSPDFPANEQRLDAQVEWFARVFGDRAWIAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D + ++A H +P+VAT+ L DVL + V + Sbjct: 176 TLHARAMDDIHRGVLERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPV-TECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV +ARRC+F L P + D Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD--- 291 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G R G D + +++ EL +IA M + YFL V D +Q Sbjct: 292 -PATYLREQTYIGARRRFPAG------IPVDVQAQIEHELQLIADMHYEAYFLTVYDIVQ 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I GRGS A S Y L +T++DP R S+LFERF++ +R S PD D+DF Sbjct: 345 FAREQGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 +R+ V++Y+ KYG +R A + + ++ALR+ G+AL + + V+R+ K + Sbjct: 404 KREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDTAIVERVAKQHHWFDSR 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 LQ A+ P + + +L G RH S H+ G VI L++LVP+ Sbjct: 464 ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 D + Q++ IE G++K D L L L++++++LD + +RG +L IP Sbjct: 520 ENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAQ 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ +V+ Sbjct: 580 DKATYDMLCEGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFL 639 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + ++ L T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ ER +SG + G + A +IF + F +YGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLAA + + + QDAR+ ++++P VN D + + + Sbjct: 760 HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGSTTSAPVRL 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896 + ++G+ A I A A +PF + D R +L+R L+ L A AL G Sbjct: 820 GFSLLRGMREDVAGRIELARAARPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 +R A ++ + + + + + Sbjct: 877 NRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEGHEIVTDY 920 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 R +GF HPL + + L ++ E+ G R +V +Q+ T G + Sbjct: 921 RAMGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++T + + +P Sbjct: 979 FMTLEDETGQVNVILWP 995 >gi|317405112|gb|EFV85458.1| error-prone DNA polymerase [Achromobacter xylosoxidans C54] Length = 1075 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 276/1053 (26%), Positives = 434/1053 (41%), Gaps = 78/1053 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + LQ S++S L+GA + + A A+AITD +L + +A + Sbjct: 19 PGYAELQCQSNFSFLQGASHPEELAARAAELGYAALAITDECSLAGVVRAHMEAKTQKLP 78 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + P + LL T EGY L EL++ K Sbjct: 79 LIIGATFRLRAG-----------PEAAPLDLTLLAQTREGYGNLSELITLARTR-APKGE 126 Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ E L L + I + + ++ F R +V L Sbjct: 127 YRLAPEDFTAPPPGYEHLRHLPECLA--ILSPVYGDDPDRMAQQARWLAATFPRRAWVGL 184 Query: 187 Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 +R D + V A ELP+VA HD L + VSQ Sbjct: 185 TLLYRSRDDLHRAAVDHAARAAELPVVALGQVQMHVRSRKPLHDTLTGIRTHQCVSQ-CG 243 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 ++ + R+ M PEAL T+ +ARRC+F L P I Sbjct: 244 YALSGNAEQHLRTRMRLANLYPPEALAQTLVVARRCAFSLDELRYEYPDEIIPRG----H 299 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + +AG R G ++++ EL +IA + + YFL V D + Sbjct: 300 TPATYLRQETLAGAARRFPDG------TPDYVSEQIEKELALIADLHYEAYFLTVYDIVL 353 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ N I GRGS A SV Y L IT++DP R + LFERF++ +R PD D+DF Sbjct: 354 YARNNGIL-CQGRGSAANSVVCYCLGITEVDPRRGNNLFERFISKERNEPPDIDVDFEHQ 412 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR++VI+Y+ KYG +R A S + ++ LRD GRAL + +D + + Sbjct: 413 RREDVIQYIYRKYGRQRAALTAVVISYRPRSVLRDTGRALGVDPGVIDAVARAHQWWDGK 472 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L+ + + ++Q L G RH S H G VI LS+LVP+ Sbjct: 473 KEMLRTLGAC----GLDPESQVARQWAALAQTLMGFPRHLSQHPGGFVISRGKLSRLVPI 528 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 +D V Q++ ++ L+K D L L L+ L+++L+ QR + L IP Sbjct: 529 ENAAMADRSVVQWDKDDLDALNLLKVDVLALGMLSALRRTLELAGQRRGQPLRLQDIPEG 588 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 589 DDPTYDMICDADTIGVFQIESRAQMTMLPRLRPRKYYDLVVQVAIVRPGPIQGGMVHPYL 648 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 R+ GKE I + +L T GV I+QEQVMQIA + +G+S EAD LRR+M Sbjct: 649 RRRQGKEDIDYPSDKVKGVLSRTMGVPIFQEQVMQIAVVAAGFSPGEADQLRRSMAAWKR 708 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K +DK + + + G + + A +F + F +YGF +SHAA++A+++Y ++W+K Sbjct: 709 KGGVDKYRAKLVGGLLAHNYTLEFAEALFRQIEGFGEYGFPESHAASFALLAYASSWLKR 768 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831 H P FLAA + + + QDAR+ ++++P V D + Sbjct: 769 HEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPVDVTVSGWDAALETPPADAPPRR 828 Query: 832 -----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 + L+ I+G+ +AR I A A+ PF S D R L R Sbjct: 829 SHPHAPSPDETRPAVRLGLSLIQGLHEDSARRIEAARAEAPFTSTGDLARRA---ALTRH 885 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 L +L AL R Q + + + Sbjct: 886 DLNALAAGDALRTLAGHRRQASWEAAASVHSRDLLRDAAIH---------------ETEA 930 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + + + R +G HP+++ +P L + R + Sbjct: 931 PRLAAPTENQTVAADYRSVGLTLRRHPVELLRPQLAARNFQPASALNGYPDKRVARACGI 990 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V +Q+ +T KG + +VT + P Sbjct: 991 VTVRQRPQTSKG--VIFVTLEDETGPVNVVVRP 1021 >gi|319787762|ref|YP_004147237.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317466274|gb|ADV28006.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1095 Score = 589 bits (1518), Expect = e-165, Method: Composition-based stats. Identities = 274/1047 (26%), Positives = 461/1047 (44%), Gaps = 79/1047 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S +S L GA S ++ + A A+AITD +L + + + A G++ Sbjct: 52 PAYAELHCLSEFSFLRGASSAEDLFARAAQCGYEALAITDECSLAGIVRAWEASRATGVK 111 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++G + +D VLLV + GY RL ELV+ K S Sbjct: 112 LVVGSEFALDCGLRC----------------VLLVQSRLGYTRLCELVTTGRRNSA-KGS 154 Query: 129 VRICLSWLQE------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 R+ + ++ G EG + TG G E R L +FGD Sbjct: 155 YRLSRADVERVVRAPPPGEEGGMAGTGEDCGLFALWLPGAEPDPVEGRWLRL--VFGDDA 212 Query: 183 YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ ++ HR D R +Q+ +LA ++ VA + D L A+ H+ Sbjct: 213 YLAVELHREQDDAARLAQLQELAARLQMTAVAAGDVHMDVRRRRVLQDTLTAIRHNLT-I 271 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R+ + R+ L+ VE+ARRC+F L+ A + KE Sbjct: 272 AECADRLFRNGERHLRTRRALAAIHPAPLLQAAVELARRCNFDLRKEARYV---YPKELV 328 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + LR G+ R +G +++ EL +IA +K+ +FL V Sbjct: 329 PEGHTPSSWLRQLTEEGMRERWPEGV------PPRVAAQIEEELALIAELKYEAFFLTVE 382 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +++A+ +I GRGS A S +AL IT +DP + LL RFL+ R PD D+D Sbjct: 383 DIVRFARGKDIL-CQGRGSSANSAVCFALGITAVDPAQTRLLVSRFLSRARNEPPDIDVD 441 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR+EV++YV +KYG R A T + K+A+RDV +A +P Q+ L + Sbjct: 442 FEHERREEVLQYVYSKYGRRRAALAATVIRYRGKSAVRDVAKAFGLPPDQIGLLAECFGW 501 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 Q +++ +P ++++L ++ LE + RH S H G VI D PLS Sbjct: 502 GNGAAPMRQRLSE----AGFDPDNPLINKVLALAAMLEDMPRHLSQHVGGFVISDAPLST 557 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600 +VP+ +D + Q++ +E G++K D L L LT ++K+ D + RGV++D++ Sbjct: 558 VVPVENAAMADRTIIQWDKDDLETMGMLKVDCLALGMLTCIRKAFDLVEGYRGVRLDMAT 617 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 +P +D TY +L ++G+FQ+ES L ++P D++ V++ RPGPI +V Sbjct: 618 LPREDAATYEMLQAADSVGVFQVESRAQMAMLPRLRPKRFYDLVVQVAIVRPGPIQGGMV 677 Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718 + R+ GKE + + +L T G+ ++QEQVM++ + +GYS EAD LRR+M Sbjct: 678 HPYLRRRMGKEPVTYPSEGVREILGNTLGIPLFQEQVMELV-IHAGYSPEEADHLRRSMA 736 Query: 719 KKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 + +M+ + R + S +FE + F YGF +SHAA++A + Y +A Sbjct: 737 AWGRGGDMEPHRLRIRQLMEEKRYSSEFIDQLFEQIKGFGSYGFPQSHAASFAKLVYVSA 796 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVG- 831 W+K H P F A + + + QDAR + ++ + P + D + Sbjct: 797 WLKRHEPAAFACALINSQPMGFYSPSQIVQDARRGRGDRESVDVRPVDITCSTWDCTLEP 856 Query: 832 -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 I L + G+ A+ I++A + F + D C R +L+ + ++L Sbjct: 857 VGQGKQPAIRLGLRLVAGLSEAAAQAIVDARRWRVFSDVADLCRRA---RLDAKARQALA 913 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGALD R ++ I + ++ + Sbjct: 914 EAGALDGLAGHRNAARWAVAGI------------EPKRPLLDTSPDETRIELPAPRL--- 958 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + R G HP+ + + L + I G E G+ + +A +V +Q+ Sbjct: 959 --GEELLADYRSTGLSLRAHPMALLRAQLVQRRILGVRELQQRRHGSGVHVAGLVTQRQR 1016 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 T KG+ +VT + +P Sbjct: 1017 PATAKGT--IFVTLEDEHGMVNVIVWP 1041 >gi|300789271|ref|YP_003769562.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] gi|299798785|gb|ADJ49160.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32] Length = 1109 Score = 589 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 268/1037 (25%), Positives = 439/1037 (42%), Gaps = 58/1037 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L VHS++S L+GA ++++ A + A+ +TD + ++ A+ F+ A G++ Sbjct: 65 YAELHVHSNFSFLDGASHPETLVEEAARLELDALVLTDHDGMYGAVRFNDAARELGVRVG 124 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P ++++ GY RL ++SR L K Sbjct: 125 FGAELSLGLP-----APQAGAPDPAGSHLLVIARQQTGYHRLCRVISRAQLAGGEKGRPV 179 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +++LTG G + RA A L FG + V L H Sbjct: 180 YDFDELAEELAGHVVVLTGCRKGAVRRALAERGPAAARAELARLVDRFGRSHVAVELIDH 239 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 R D + LA LP V + N + ED D + AV + R Sbjct: 240 RLPRDDAANDLLAALAKDLRLPTVVSGNVHYARPEDAVVADAVAAVRARRSAEDLEGWRP 299 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + + ++ + +E Sbjct: 300 PSGQAFLRSGMEQRRRFERRYPGAVGRAAVLGVEVAFDL--NLVAPDLPPFPVPAGHDEM 357 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + L G R + H + Y +LD EL VI ++ F GYFL+V D +++ + Sbjct: 358 SFLIELTRQGAAKRYG----PRDEHPKAY-AQLDHELAVIEKLGFPGYFLVVWDIVRFCR 412 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GRGS A S YAL I DP++++LLFERFL P+R PD D+D RR+ Sbjct: 413 EAGIL-CQGRGSAANSAVCYALEICHADPVKWNLLFERFLAPERDGPPDIDVDIESGRRE 471 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 E I+YV K+G AQ+ + +A +A+RD +AL Q D KL+ + Sbjct: 472 EAIQYVYEKHGRFHAAQVANVITYRAPSAIRDAAKALGHSPGQQDAYGKLVDRWGGVAAT 531 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 Q D +L+++ ++E RH H+ G+V+ +P+S++VP+ Sbjct: 532 KQQ-----------ATGAIPDDVLDLAARIEDFPRHLGIHSGGMVLSKQPVSEVVPVEWA 580 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607 D V Q++ GL+KFD LGL L+ L +D +A+ VD+ + D Sbjct: 581 TMKDRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHHMIDLVAEHHGSTVDIGKLDLADPA 640 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665 Y +L +G+FQ+ES L ++P D++ V+L RPGPI ++ Y R+ Sbjct: 641 VYDMLCAADAVGVFQVESRAQLATLPRLRPRKFYDLVVEVALIRPGPIQGGSVHPYIRRR 700 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724 G E+ HPL+ L T GV ++QEQVMQ+A ++ ++ +EAD LRRAM K+ + Sbjct: 701 RGDEEWEHAHPLLAASLDRTLGVPLFQEQVMQMAVDVASFTAAEADQLRRAMGAKRSSAK 760 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 M RF +G + NG+ + +A IFE + F+ YGF ++H+ ++A++ Y +AW K +YP Sbjct: 761 MRALMARFFAGCAANGLDRELATRIFEQIHAFSGYGFPEAHSMSFALLVYASAWFKRYYP 820 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RIYY 837 F A + + + DAR+ + I P +N + ++ + Sbjct: 821 AAFCAGLLRAQPMGFYSPQSLVADARRHGVHIREPDINASLAGATLEEDAGSTGGVALRL 880 Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 LAA++ +G A I+ A P+ + D SRV K + V E+L AGA FG Sbjct: 881 GLAAVRHLGDDVADLIVAERDAHGPYTDIGDLTSRVPLK---KNVAEALATAGAFSSFGG 937 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R Q L + ++ G + + Sbjct: 938 DRRQDLW----------AAGAAAATRPGHLPGLAPG-----LDAPALPGMTRLEVTAADL 982 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 G GHP++ + +L + G E + T G + + V +Q+ T G I Sbjct: 983 WATGVSPDGHPVEYLRELLDRRGAITVAELMRTEDGTRVWVGGAVTHRQRPATAGG--IT 1040 Query: 1017 WVTFSEPAKEYEANFFP 1033 ++ + P Sbjct: 1041 FLNLEDETGMANVLVSP 1057 >gi|307943857|ref|ZP_07659201.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4] gi|307773487|gb|EFO32704.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4] Length = 1135 Score = 589 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 262/1053 (24%), Positives = 447/1053 (42%), Gaps = 80/1053 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 F L S++S L GA + + A A+AI D N++ + A AG++ Sbjct: 19 SGFAELCAASNFSFLHGASHPEELAMRAADLGLKALAICDRNSVAGVVRAHMAAKEAGLR 78 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 + GC+L P +++ +GY RL L++ + K Sbjct: 79 FVPGCRLGF---------------LDGTPDLLVWPKHRQGYGRLSRLLTIGNRRAE-KGC 122 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + L + + L P S L K + G L + + Sbjct: 123 CHLLPDDLTHLDQGSVTALVLPPGLP--------SPDEMIADLQGLKAVLGSDLRLAVSL 174 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 +G DR R V+LA ++ L+ATN+ L+ E DVL + + R Sbjct: 175 SKGPADRRRLDLAVRLAQLSDVKLLATNDVLYHVLERRPLQDVLTCIRLHERLETAGRQL 234 Query: 248 V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + YLK+ +M +F +AL ++ I SF L A P E D Sbjct: 235 EANAERYLKDAEDMARLFDGAEDALYESLRILEELSFSLDDLAYEYPE--EPCGDSA--S 290 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + EL A G + R G + ++ EL ++A + ++ YFL V D +++ Sbjct: 291 PQAELERLAEEGAKRRYPNGV------PDKVTKAINHELKLVAELDYAPYFLTVYDIVRF 344 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A SV + L IT++DP R LLFERF++P+R PD D+DF +R Sbjct: 345 ARSRGIL-CQGRGSAANSVVCFCLGITEVDPARADLLFERFISPERRESPDIDVDFEHER 403 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+Y+ KYG ER T + + ++ALR+VG+ + + L I + Sbjct: 404 REEVIQYIYEKYGRERSGLAATVITYRTRSALREVGKVFGLSEDAIGALSGTIWGHSSSE 463 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S + + DP + +++E+ L G RH S H G VI L ++VP+ Sbjct: 464 ASEGQVVE----AGMDPKDPMLGQMMELVDTLIGFPRHLSQHVGGFVITKGRLDEVVPIQ 519 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605 D V +++ ++ G++K D L L L+ ++K+L G ++ IP ++ Sbjct: 520 NAAMEDRTVIEWDKDDLDALGILKIDILALGMLSAIRKALDMLSENYGCDYTVATIPPEE 579 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 E Y +L ++G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 580 PEVYDMLCRADSIGVFQVESRAQMTMLPRLKPQAFYDLVIEVAIVRPGPIQGDMVHPYLR 639 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ G EK+ ++ +L +T GV ++QEQ M+IA + +G++ EAD LRRAM + Sbjct: 640 RRQGLEKVTYPSRELEEVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADRLRRAMATFRRV 699 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + + I G +KNG + A F + F +YGF +SHAA++A++ Y ++W+K Sbjct: 700 GTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYASSWIKAR 759 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831 YP F AA + + + +DAR+ +++ +N D + Sbjct: 760 YPDVFCAALLNSQPMGFYAPAQLVRDAREHGVEVREVDINMSDWDAGLEPGNCAADRLHR 819 Query: 832 -----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 + + +IKGV ++ + +DS+ D R L R Sbjct: 820 KHADMRGTIQSNKAVRLGFRSIKGVRQDDMEILVAMRGEG-YDSVRDLWLRT---GLGRP 875 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 V+ L A A G R L + AQ +E+ + +F Sbjct: 876 VIMRLAEADAFRSLGLDRRTALWA-------AQGLERGKVQDRLPLFDTADAGDLRPEPN 928 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + L HP+ +P L++ + E G ++ +A + Sbjct: 929 ADLPSMPPGAHVMADYQTLSLSLKAHPVAFARPALQRQRVVPCMELDRLRSGCHVTVAGL 988 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V+ +Q+ + KG + +VT + +P Sbjct: 989 VLVRQRPGSAKG--VIFVTLEDEGGIANVIVWP 1019 >gi|262201696|ref|YP_003272904.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247] gi|262085043|gb|ACY21011.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247] Length = 1090 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 279/1037 (26%), Positives = 464/1037 (44%), Gaps = 72/1037 (6%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 S + L HS+YS L+GA ++ + A++ITD + + + F++ A Sbjct: 62 PSSVPYAELHAHSAYSFLDGASMPEEMVTEAQRLDLRALSITDHDGFYGIVRFAEAAREF 121 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G+ + G +L + + P +++L +EGY+RL ++ +++ Sbjct: 122 GMPTVFGSELSLAHD-----VARTGHNDPPGEHLLVLARDSEGYRRLSRTIADAHMVAGE 176 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 K +R L ++LTG G + RA + AE L FG D + V Sbjct: 177 KGLLRYERESLSSAAGGHWLILTGCRKGAVRRALDRGGASAAEVALRDLVDRFGRDDVAV 236 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQ 242 L D R + + +A + VAT + F + AV T + + Sbjct: 237 ELTASGLPDDDDRNAALAGVARLVGVATVATTGAHFAGPRRRRLAMAMAAVRARTDIDTI 296 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 +L + EM + +A++N V++A C+F L + AP LP F + Sbjct: 297 AGWMPGVAGAHLCSGDEMARLLPAHRDAIDNAVQLAADCAFELGLIAPQLPPFDVPDG-- 354 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 E LR + R H Q YRQ ++ EL ++ + F GYFL+VAD Sbjct: 355 --HTEITWLRELTMTRARRRYG----TPAQHPQAYRQ-IEHELAIVETLNFPGYFLVVAD 407 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + + K N+I GRGS A S YAL IT++DP+ LLFERFL+P+R PD D+D Sbjct: 408 IVDFCKANDIL-CQGRGSAANSAVCYALGITNVDPVANKLLFERFLSPERDGPPDIDVDI 466 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+E I+YV +YG + AQ+ + + ++A+RD+ RAL Q D +L Sbjct: 467 ESDRREEAIQYVYRRYGRDYSAQVANVITYRGRSAVRDMARALGYGTGQQDAWSRLPDEA 526 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 P + + ++ G+ RH H+ G+VI DRP++ + Sbjct: 527 P------------PEVADL-------------AGEILGMPRHLGIHSGGMVICDRPIADV 561 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601 P + V Q++ GL+KFD LGL L+ L ++D +A+ VDL+ + Sbjct: 562 CPTEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLHVDLAEL 621 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 622 DLSEPAVYEMLCRADSVGVFQVESRAQMATLPRLRPRKFYDLVVEVALIRPGPIQGGSVH 681 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 Y R++G+EK HP + L+ T GV ++QEQ+MQ+A ++G+ + AD LRRAM Sbjct: 682 PYIRRRHGQEKPTVEHPSMHKALERTLGVPLFQEQLMQLAVDVAGFDAAGADQLRRAMGS 741 Query: 719 KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777 K+ E M++ ++RF G +GI+ +A IFE ++ FA++GF +SH+ ++A + + ++ Sbjct: 742 KRSPERMERLRQRFYDGMRDLHGITGEVADRIFEKMSAFANFGFPESHSQSFASLVFYSS 801 Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835 W K H+P F AA + + + DAR+ +++ P +N + + + Sbjct: 802 WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVRVHRPDINVSLPHATLENEGLEV 861 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L ++GVGT A I+E AD P+ + D R L R LE L AGA D F Sbjct: 862 RLGLDGVRGVGTEVAERIVERRDADGPYRDITDVSRRA---GLTTRELEGLAGAGAFDVF 918 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G SR Q L + + + T + Sbjct: 919 GVSRRQALWEAGAA--------ATVRDDQLPL--------ASAATTPTLPGLSDVELAAT 962 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + G + +P +P LR MG+ E ++ G+ + + V +Q+ T G Sbjct: 963 DAWATGITPTSYPTQFLRPRLRAMGVLAAETLLSVPDGSRVVVGGAVTHRQRPATASG-- 1020 Query: 1015 IGWVTFSEPAKEYEANF 1031 + ++ + Sbjct: 1021 VTFINLEDETGMVNVVC 1037 >gi|319935864|ref|ZP_08010290.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1] gi|319809131|gb|EFW05612.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1] Length = 1018 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 330/1027 (32%), Positives = 543/1027 (52%), Gaps = 55/1027 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F HLQV S+YS + + +++ A A+A+TD NN+F ALEFSQ+ GI+PI Sbjct: 2 FGHLQVLSAYSFQNSTILIKDLIQDANAKHIEALALTDKNNMFGALEFSQECLKYGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G + + ++ + +LL GY L+++ + L + Sbjct: 62 FGMEASVMIE-------------GEIYPFILLAKDDIGYFDLVKVCCDINLHEDK----C 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I L L + +++G + G ++R + A K L +FK +F D YV +Q H Sbjct: 105 IDLKSLALY-KGHMYIISGSAQGIVERLVAKEMEEEAVKYLKSFKDIFQDNYYVMIQNHH 163 Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 + +++ LA + ++ +N ++L + D A D++ A + K P Sbjct: 164 IKLQQALNERIISLAKYCRVKILCSNEVIYLKKADALAVDLMQAANQGLTLESKYVPITE 223 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + + ++ L T E+ + C + + LP F E Sbjct: 224 EKYLKTEDEMKMLFDAE---ILAETREVVQNCKATIPLQDKHLPSFPVPHH----GEASE 276 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L+ GL+ R I Y +RL +EL +I +M F YFLIV D++++AK Sbjct: 277 YLKGLCQMGLKKRFQNQKI-----PSQYVKRLQYELKIIHQMGFDDYFLIVWDYVRFAKV 331 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I VG GRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF DRRDE Sbjct: 332 NKIQVGAGRGSAAGSLVAYVLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFQDDRRDE 391 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVS 488 V+ YV KYG + VAQI+TF + + A++D+G+ + +P ++++ + K+IP P Sbjct: 392 VVHYVVEKYGQDHVAQIVTFNTYGPRVAIKDMGKVMGIPLARLEIIAKMIPTGPKNKKTI 451 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++F+ DP + +++ + +E L R+ STHAAG+++ +PL +++P+ Sbjct: 452 TTMYKTSAQFQSMINQDPLLKKIIGATSVIEHLPRNISTHAAGVILSKQPLREVIPLVLG 511 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607 + ++Q++ +IE+ GL+K DFLGLK LT++ + + + L+ +P +D + Sbjct: 512 PTA-TLMSQYSKDYIEEVGLLKMDFLGLKNLTMIDYICKDIKRDINETVFLNQLPLNDQK 570 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 TY L+ T G+FQLES GMR L M+P C +DI+A ++L+RPGP++NI +Y R+ Sbjct: 571 TYELIARADTFGVFQLESQGMRNLLRKMKPYCFDDIVAAIALFRPGPMENIPLYLKRRGL 630 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +EK+V P ++P+LK T GV+IYQEQ+MQ+AQ ++G+SL +AD+LR+A+ KK M Sbjct: 631 QEKVVYPLPELEPILKSTYGVMIYQEQIMQVAQKMAGFSLGKADILRKAVSKKETGLMQS 690 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 KE FI+G G + A+ IFEL+ KFA+YGF K+H+ AY ++YQ A++K +YP+ F Sbjct: 691 MKEEFIAGCIDKGYREEKAIEIFELIEKFANYGFGKAHSVAYGYVAYQLAYLKANYPLYF 750 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A+ ++ E+ + Q+ + +++ I+PPSVN F V + I YSL AIK VG Sbjct: 751 FASILSNELSSETTKLHCIQECKTYHVDILPPSVNYSHARFMVENGHIRYSLLAIKNVGY 810 Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907 + I+E + F+ + DF R+D KL+++++ESL+ AGALD F SR + ++LD Sbjct: 811 AGYKAIVEERKNGLFEDVYDFMMRMDESKLSKKMIESLIDAGALDEFQLSRNTMKKNLDT 870 Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967 I+ Y N+ ++ K L + + E+ VLG Y + HP Sbjct: 871 IRDYGNLK---------NMLGIDE-----KPVLTIYKDFQD-EKLRKEKEVLGIYLTMHP 915 Query: 968 LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 +++ K L Y + + + + + RKG + ++ + Sbjct: 916 IELMKEKLN----TPYINVSSLYEYVNQTVNIVVQLQRVKNITDRKGDEMCFIEGFDETG 971 Query: 1026 EYEANFF 1032 + F Sbjct: 972 SVDGVVF 978 >gi|94971073|ref|YP_593121.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis Ellin345] gi|94553123|gb|ABF43047.1| error-prone DNA polymerase, DnaE-like protein [Candidatus Koribacter versatilis Ellin345] Length = 1070 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 278/1046 (26%), Positives = 504/1046 (48%), Gaps = 45/1046 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + ++ L +S++S L GA ++ + + PA+A+ D N ++ + F A Sbjct: 1 MTAQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKP 60 Query: 65 AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLL 122 G++ +G ++ + D+ + + +P P + LL + EGYQ L +V+R+ + Sbjct: 61 NGVRAHVGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMR 120 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + K ++ ++E GL+ LTGG GP+ A K + ++FG + Sbjct: 121 EPSKAEGAAVMADVEEFAR-GLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGREN 179 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239 ++V LQRH ++ R V++A + +LP++ATN + E + E D+ A+ H + Sbjct: 180 VFVELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVAL 239 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 YL+ +EM +F DLPEA+ NT E+++R +F L P + + Sbjct: 240 KDAGRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPD 299 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + ++ L + G+ R Y ++++ EL +I ++ +GYFLI Sbjct: 300 GESM----DSFLEKRVQEGVIKRYGAKNEPDLYARA--QKQVARELALIKKLGLAGYFLI 353 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D I++ ++N+I V GRGS A S YAL IT +DP+ LLFERFL+ R PD D Sbjct: 354 VWDIIRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDID 412 Query: 420 IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +D D+R++ I+YV +YGH A + + K+A R+VG+AL +++L KL Sbjct: 413 LDLPSGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKL 472 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + + P + + L++ +++ L RH H+ G+VI Sbjct: 473 VSTWEWRG-PNDTLENQFESAGFEAKHPHIAKYLDLCSRIQDLPRHLGQHSGGMVICQGQ 531 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L +VP+ V Q++ +IK D LGL + +++ +D + + V VD Sbjct: 532 LDSVVPIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYGVPVD 591 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L+ +P +D + Y L T+G+FQ+ES +L P DI+ V++ RPGPI Sbjct: 592 LAQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAIIRPGPIVG 651 Query: 658 IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + Y R+ KE++ HPL++P+LK T GV ++QEQ++++A +++ +S +EA+ LRR Sbjct: 652 NMANPYMRRRQKKEEVTYYHPLLEPVLKRTLGVPLFQEQLLRMAMIVANFSGTEAEELRR 711 Query: 716 AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 A+ ++ + M + + +G ++NG I + ++ FA YGF +SHAA++A+I+Y Sbjct: 712 ALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGFPESHAASFALIAY 771 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 +A+ K HY F AA + + +DA++ ++++P V D V Sbjct: 772 ASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDVQRSVWDCTVEHAG 831 Query: 832 -DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + ++ L ++G+ TA ++++ + PF S ED RV LNR+ L +L G Sbjct: 832 DERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL--LNRKELVALAQIG 889 Query: 890 ALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AL+ G R L ++ + + + + + ++ + + N Sbjct: 890 ALNWVGGTAHRRDALWQVERVSR-----------RPGPLL----QSAEEEEDVSPLAQMN 934 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R + G HP+ ++ L KM + E+ G +R+A V+++Q+ Sbjct: 935 WEERLVADFNGTGLTVGKHPMTYHRERLAKMRVLSAEQLQVAEDGRQVRIAGCVIARQRP 994 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T KG +++ + A P Sbjct: 995 GTAKG--FVFLSIEDETGIANAIISP 1018 >gi|134287639|ref|YP_001109805.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4] gi|134132289|gb|ABO60024.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4] Length = 1048 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 286/1036 (27%), Positives = 462/1036 (44%), Gaps = 62/1036 (5%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AA + Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMA 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L E +S + + K + Sbjct: 70 LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117 Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L+ E L L + I F + Q + ++ F ++FGDR +V L Sbjct: 118 YRLAPLDLEHPEAPYTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175 Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 H R D V ++A H +P+VAT+ L DVL + V + Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPV-SECG 234 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ RS + ALE TV +ARRC+F L P + D Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD--- 291 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 LR + G R G D + +++ EL +IA +K+ YFL V D +Q Sbjct: 292 -PATYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFLTVYDIVQ 344 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A++ I GRGS A S Y L +T++DP R S+LFERF++ +R PD D+DF Sbjct: 345 FAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVDFEHQ 403 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ KYG +R A + + ++ALR+ G+AL + + VDR+ K + Sbjct: 404 RREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQHHWFDSR 463 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 LQ ++ P + + +L G RH S H+ G VI L++LVP+ Sbjct: 464 ADLLQRFSE----AGLDPDAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604 D + Q++ IE G++K D L L L++++++LD + +RG +L IP + Sbjct: 520 ENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAE 579 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ +V+ Sbjct: 580 DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFL 639 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 + + E + ++ L T GV I+QEQVMQ+A L +G+S EAD LRRAM Sbjct: 640 RRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ ER +SG + G + A +IF + F +YGF +SHAA++A++ Y +AW++ Sbjct: 700 KGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837 H P FLAA + + + QDAR+ ++++P VN D + + Sbjct: 760 HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSALEGPATSAPVRL 819 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + ++G+ A I A A +PF + D R +L+R L+ L A AL Sbjct: 820 GFSLLRGMREDVAGRIELARAARPFVDVADLARRA---RLDRHDLQVLARANALCSLTGG 876 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R A ++ + T+ + + R Sbjct: 877 RR------------AALWLAAAALPDRDLLRGTERDD----TVPALPQASEGHEIVTDYR 920 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +GF HPL + + L ++ E+ G R +V +Q+ T G + + Sbjct: 921 AMGFTLGRHPLALLRERLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLF 978 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + + +P Sbjct: 979 MTLEDETGQVNVILWP 994 >gi|282854988|ref|ZP_06264320.1| error-prone DNA polymerase [Propionibacterium acnes J139] gi|282581576|gb|EFB86961.1| error-prone DNA polymerase [Propionibacterium acnes J139] Length = 1134 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 286/1077 (26%), Positives = 464/1077 (43%), Gaps = 105/1077 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HSSYS L+GA S +++ + A +A+TD + L+ + ++ A A G+ I Sbjct: 57 YAELHCHSSYSFLDGASSPEDLVIRAAELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG +L I + + Q P +++L + EGY+RL E ++ YL++ G K Sbjct: 117 IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGHKGRP 171 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L E+ +LTG G + + AE L LFG D + V L Sbjct: 172 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMP-QAEAELRRLVDLFGIDNVLVELTD 230 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D + +LA H L VAT + + E +E L AV + + D Sbjct: 231 HRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVRARRSLDEMDGWL 290 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 L++ +EM +FS +A++NTV +A R +F L+ P LP + Sbjct: 291 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ G +A + RL EL++I F+GYFLIV+D ++ Sbjct: 347 PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIAEF 398 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT +DP+ + L FERFL+ R PD D+DF R Sbjct: 399 AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV KYG AQ+ + + ++A+RD+ +AL Q D + + P Sbjct: 458 REEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDAWSRQMERRSVPP 517 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + D + ++Q++ GL RH H+AG+V+ P+ ++ P+ Sbjct: 518 LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 V Q++ + GL+KFD LGL L+ L S D ++Q L+ IP ++ Sbjct: 567 PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 Y +L ++G+FQ+ES L ++P C D+ + L RPGP+ + Y Sbjct: 627 PGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ G E + HPL++P+L+ T G+ ++QEQ+MQ+A + ++++AD+LRRAM K+ Sbjct: 687 RRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSKRGV 746 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E ++ + + G + NGI A I+ + FA++GF +SHA ++A + Y +AW+K H Sbjct: 747 ERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP----------------------- 819 YP FLAA + + DAR+ + P Sbjct: 807 YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSLVGADLELLDACCEELGS 866 Query: 820 -------SVNTPCVD------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856 D F + + L+ + G+ TA I+E Sbjct: 867 EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + F SL+D RVD +E+L AGA D SR L + I Sbjct: 927 RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVGPGQL 983 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + ++ R G + HP+ + L Sbjct: 984 DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + G + +A +V +Q+ T G+ ++ + P Sbjct: 1028 RRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGGA--TFLNLEDETGLLNVIVTP 1082 >gi|225873142|ref|YP_002754601.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225792983|gb|ACO33073.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1072 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 298/1046 (28%), Positives = 501/1046 (47%), Gaps = 43/1046 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +V L S++S LEG + ++ ++ AA Q PA+A+ D N L+ A F A Sbjct: 1 MTE--RYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQR 58 Query: 65 AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLL 122 G+Q IG ++ + + L +PT P + LL +T +GYQ L +L+SR L Sbjct: 59 HGVQANIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLR 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + KQ ++ L++ EGLI LTGGS GP+ A +K L +FG Sbjct: 119 EPSKQEGAARVNELEQF-AEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQH 177 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 +YV LQRH ++ R +++A+ LP+VATN + SE D E D+ A+ H T + Sbjct: 178 VYVELQRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPL 237 Query: 241 SQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + +L++ EM ++F D+P A+ENT+E++ R +F L PR+ Sbjct: 238 DRAGHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPA 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 D + ++ LR + G+ +R + ++++ EL++IAR+ F+GYFLI Sbjct: 298 GDCM----DSFLRKRVQEGVALRY--NSRHNHDLLARVHKQVERELSLIARLGFAGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D I++ K+++I V GRGS A SV YAL IT +DP+ LLFERFLN +R PD D Sbjct: 352 VWDIIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDID 410 Query: 420 IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +D ++R++ I+YV +YG A + + K+A R+VG+AL + RL L Sbjct: 411 LDLPSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGL 470 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + N + ++A R A P + R LE+ +++ + RH H+ G+VI Sbjct: 471 VANFEWKGPT-DSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQGQ 529 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598 L+Q+VP+ R V Q++ + G+IK D LGL + +L+ ++ + + + Sbjct: 530 LNQVVPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGERID 589 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656 D Y L T+G+FQ+ES +L P D++ V++ RPGPI Sbjct: 590 LAQLPQDEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPIVGK 649 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + Y R+ GKE + HP ++P+L+ T GV ++QEQ+++IA ++ +S +EA+ LRRA Sbjct: 650 MMHPYMRRRQGKEPVTYPHPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEELRRA 709 Query: 717 M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 + ++ E M + + +G + NGI+ I + ++ FA YGF +SHAA++A+I+Y Sbjct: 710 VGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFALIAYA 769 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833 +A++K Y F A + + +DA++ +++ P + + Sbjct: 770 SAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLEQEPD 829 Query: 834 ---RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + L +G+ TA + A + PF S E+ +RV L+R+ L L G Sbjct: 830 DSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVP--ALSRKELALLARIG 887 Query: 890 ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AL+ R L ++ K +FA ++ Sbjct: 888 ALNSLDQVAHRRDALWQIERAGK-----------PEGPLFAQSNEALREQDVALPLMPMT 936 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 + R + G HP+ + L GI G +R+A V+++Q+ Sbjct: 937 TEERLVADYFGTGLTVGKHPMSYRRQELDHAGILTASALQQFQDGKLVRVAGCVIARQRP 996 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033 T KG +++ + P Sbjct: 997 GTAKG--FVFLSMEDETGIANIIVTP 1020 >gi|169348422|ref|ZP_02866360.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552] gi|169293891|gb|EDS76024.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552] Length = 1017 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 349/1023 (34%), Positives = 541/1023 (52%), Gaps = 52/1023 (5%) Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72 HLQV+S+YS + + ++ K + A+A+TD +N+F A+EF++ I+PI G Sbjct: 4 HLQVYSAYSFQNSTILIEDLCKKASDLHYEALALTDKDNMFGAMEFTKCCAKYRIKPIYG 63 Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132 + +++ + ++LL GY L+++ S + L D I Sbjct: 64 LEASVEIDHEI-------------YPLILLAKNTSGYFSLVKITSDISLSDNK----AIK 106 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L + E L +L+G G I+R A K L FK F D YV LQ H Sbjct: 107 FDDLVK-HQEHLFVLSGCKEGIIERLILKELDSEALKYLKLFKNSF-DNFYVCLQNHNLA 164 Query: 193 DRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 ++ ++V L +P+ +N +L ++ ++L A + + Sbjct: 165 MQHKVNERLVALTLLENIPICVSNEVRYLESKEAYTLELLQAFSKGQTLDINH---EPVT 221 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 L +S + +ENT I C+ + +H LP++ + + L Sbjct: 222 DQLYLKSSYEMESIFDKKYIENTDYIINLCNASIPLHHMHLPKYPVPK----NGNASDYL 277 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + GL+ R I Y QRL EL+VI +M F YFLIV D++++AK N Sbjct: 278 KQLCSVGLKKRFKNQKINT-----VYLQRLKKELDVIKKMGFDDYFLIVFDYVRYAKINK 332 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 I VGPGRGS AGS+ AY L IT+IDPL+++L+FERFLN +R+SMPD DIDF DRRDE++ Sbjct: 333 ILVGPGRGSAAGSLVAYVLGITNIDPLKYNLVFERFLNEERVSMPDIDIDFQDDRRDEIV 392 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490 YV NKYG E V QI+TF + K A++D+G+ L + +++ L K IP P + S + Sbjct: 393 EYVTNKYGQEHVGQIVTFSTYGPKVAIKDLGKVLGITLPRLELLAKNIPTGPKNRKSAKE 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 F+ D ++ R++ +E L R+ STHAAG+V+ + L+Q+VP+ R Sbjct: 453 VYETSYNFQSMVNRDLALRRIMPSVFIVEKLPRNISTHAAGVVLSNDRLNQVVPLTRGPN 512 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609 + VTQ++ +IE GL+K DFLGLK LT++ L D G K++++ I +D +T+ Sbjct: 513 NG-IVTQYSKDYIEDVGLLKMDFLGLKNLTIIDYILKDIEKNDGRKININEIELNDKKTF 571 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L++ T GIFQLES GM+ L MQ +C++D+IA ++L+RPGP+ NI Y RK G+E Sbjct: 572 QLISRGDTFGIFQLESPGMKNLLIKMQCNCLDDLIAAIALFRPGPMANIPAYIARKKGEE 631 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + + P+L T G+IIYQEQ+MQ+AQ ++G+SL++AD+LR+AM KI M K Sbjct: 632 PVTYPLDCLKPILSSTYGIIIYQEQIMQVAQRVAGFSLAKADILRKAMSDKIVSLMASMK 691 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 FISG NG S++ AV IFEL+ KFA+YGFNK+H+ AY ++Y A++K +YP+EF + Sbjct: 692 TEFISGGIANGFSESEAVGIFELIEKFANYGFNKAHSVAYGYVAYWLAYLKANYPLEFFS 751 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A ++ E + Q+ +++ ++I+PPS+N FKV D I YSL AIK VG Sbjct: 752 ALLSNEQSSDSNKINCIQEGKKYGVKILPPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I++ F + DF SR++S KLN ++++SL+ AGA D F +R + +L +I Sbjct: 812 YQAIIQEREKGLFKDVFDFISRMESSKLNSKMIDSLIMAGAFDEFELNRSTIKYNLSHIM 871 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 +YAQ D+ + +N E E+ VLG Y S HP+ Sbjct: 872 EYAQLKN---------------MIGIDEPPILTIVKDNRMKILEEEKLVLGVYLSMHPIA 916 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + K L + I E I + + + + +KG + +V + E + Sbjct: 917 LIKQNL-NLKIISVSELHNNID-KYVTIVMAISRVKAIVDKKGQEMCFVDGYDETGEIDG 974 Query: 1030 NFF 1032 F Sbjct: 975 VVF 977 >gi|182679714|ref|YP_001833860.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182635597|gb|ACB96371.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 1090 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 280/1047 (26%), Positives = 452/1047 (43%), Gaps = 77/1047 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +S + LQV S +S L GA S + + A A+A+ D ++L + Q A A Sbjct: 1 MNRSARYAELQVTSHFSFLRGASSCEELFAQAALLGIEALAVVDRHSLAGIVRAHQAAKA 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+ IIGC+LD+ S+++ + Y RL L+S Sbjct: 61 TGIRLIIGCRLDLADGM----------------SVLVYPTDRASYARLCRLLSLGKQRGG 104 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 K + L G L +L + I L F DR Y+ Sbjct: 105 -KAQCHLDWLDLVAHGEGLLTILIAEKADEICGL-----------HLRRLHDTFKDRAYL 152 Query: 185 NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242 L H R D+ R Q+ LA +P V TN+ LF DV+ + H + + Sbjct: 153 ALTLHRRPNDQLRLHQLAVLAARFRVPTVVTNDILFHEPARRILQDVVTCIRHGCTIDEA 212 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R D YLK EM +FS PEAL T+EI RC F L+ P Sbjct: 213 GFRRERHADRYLKPPEEMHRLFSLYPEALARTLEITDRCQFSLEELTYQYPEEKTMPG-- 270 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L + G +G + LD EL +IA++ ++ YFL V Sbjct: 271 --LTAQEALTRLTLKGAADHYPEGV------PDKVQALLDHELELIAKLNYAPYFLTVNA 322 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +AK I GRGS A S Y L IT I P + LLFERF++ +R PD D+DF Sbjct: 323 IVHFAKTEGIL-CQGRGSAANSAVCYVLGITSIAPDQHDLLFERFVSEERREPPDIDVDF 381 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+ VI+++ YG +R A T +AK ALRDVG+AL +P + L Sbjct: 382 EHERREIVIQWIYKTYGRDRAALCATVIRYRAKGALRDVGKALGLPEDLLTMLSSQTWVW 441 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 + +++ + L DP + L+++++L G RH S H G V+ L +L Sbjct: 442 SKQGLDVKSAKE----LNLNLDDPRLRLTLDLARELIGTPRHLSQHPGGFVLTHDRLDEL 497 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601 VP+ +D V +++ IE +K D L L L+ +++S + LA+ + L+ I Sbjct: 498 VPIEPAAMTDRQVIEWDKDDIEVLKFMKVDVLALGMLSCMKRSFNLLAEHKKLALALTSI 557 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 558 PSEDPHTYAMIQRADTIGVFQIESRAQMSMLPRLKPKTFYDLVIEVAIVRPGPIQGDMVH 617 Query: 662 NNRKNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + + K P + +L++T GV ++QEQ M+IA +G++ EAD LRR+M Sbjct: 618 PYLRRREGKEDPDLPRAELKNVLEKTLGVPLFQEQAMRIAIECAGFTPGEADQLRRSMAT 677 Query: 720 KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 ++ K++ ++G NG A IF L F YGF +SHAA++A+++Y ++W Sbjct: 678 FKHTGTINTFKDKLVNGMVANGYEHAFAERIFHQLEGFGSYGFPESHAASFALLAYASSW 737 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------D 832 +K +P F AA + + + +DAR ++I P VN D + Sbjct: 738 IKCWHPDVFCAALLNSQPMGFYAPAQIVRDARNHGVEIRPVCVNHSHWDCTLEATGDEKR 797 Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + + +K + A I+ A AD+PF S+ED R + L +L A A Sbjct: 798 FALRLGMRMVKRLSNQDAATIVAAKADQPFLSIEDLWHRA---GVPVSALVALAEADAFA 854 Query: 893 -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-----TFSDKITLEKFSVE 946 FG +R + L ++ ++ +FA + + Sbjct: 855 PTFGIARRKALWTIKALRD-----------NPLPLFAAASAREAAFVSEIREPAVTLTPM 903 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + +G HP+ + L + I E + I A +V+ +Q+ Sbjct: 904 AAGGEVVEDYVSVGLTLREHPIAFLRGDLARRRIATCAEVIHARDRCWIETAGLVLVRQR 963 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + KG + ++T + +P Sbjct: 964 PGSAKG--VIFITIEDETGIANLVIWP 988 >gi|116333410|ref|YP_794937.1| DNA polymerase III, alpha subunit [Lactobacillus brevis ATCC 367] gi|116098757|gb|ABJ63906.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus brevis ATCC 367] Length = 1121 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 335/1025 (32%), Positives = 522/1025 (50%), Gaps = 41/1025 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FV LQV S+YSLL+ +++++ A+A+ D N ++ A+ F A I+P+ Sbjct: 2 FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G L T QG V L GYQ+L++L + Y + G Sbjct: 62 LGLTL----------TAQGLNDATQAYDWVFLAQNFTGYQQLMQLST-AYQVGGG----P 106 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ L + ++ ++ I + A++ L +L + + Sbjct: 107 VDLTQLTKNLSQLTMI--APLDSEIHTLVANDQLAPAQQILHQLNDWSVGQLAIGVSP-- 162 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 + L+ PLVA + +L+ +D+ A VL A+ +S + Sbjct: 163 DLTAVSRDHLQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQ 222 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 + R L V + + V + + Q+ + Sbjct: 223 GTH-WLRPAAEETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPNQENSRDY 281 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LR + VAGL+ RL I Y+QRLD EL VI RM F YFLI+ D + +A + Sbjct: 282 LRERCVAGLKRRLTANHITDATP---YQQRLDHELGVIHRMGFDDYFLIIWDVMNFAHQA 338 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 NI GPGRGS AGS+ AY L IT++DPL + LLFERFLN +R MPD D+D +RR++V Sbjct: 339 NIQTGPGRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRREQV 398 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 ++YV +KYGHERVAQIITFG+L AKAALRDVGR L M ++ IP + + + Sbjct: 399 LQYVHDKYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAELHITL-QR 457 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 A R R L +QKLEGL RH STHAAGIV+ +PL LVP+ Sbjct: 458 AYDQSQRLRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQPGS- 516 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609 +L +TQ+ +E GL+K DFLGL+ L++L +L Q G VDL+ I +D T Sbjct: 517 EELLMTQYPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGKIVDLNQIDLNDPATL 576 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T T G+FQ ESSG+++ L +QPD E + A+ +LYRPGP++NI + RKNG+E Sbjct: 577 KLFATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMENIDTFIRRKNGQE 636 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + + P+L T GV++YQEQVMQ+A ++ G++L +AD+LRRAM KK K+ MD + Sbjct: 637 PVTYPADALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTMDAMQ 696 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 ++F++GA + G +A +F + +FA+YGFN+SHA AY+ +++Q A++K HYP F A Sbjct: 697 KQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPAAFYA 756 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 + M ++ K K + +A++ + ++PP +N F + + I + L++IKGV Sbjct: 757 SLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSAIIFGLSSIKGVRRDF 816 Query: 850 ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 R ++ PF L F R+ SK +L +LV+AGA D FG++R +L+ +L Sbjct: 817 LREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIAALPEF 876 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 + + + + ++ + + E+ VLG Y SGHP+ Sbjct: 877 ISSVELSG-----------DNVELIAALAPKIKSQPDLDLMTKLSQEEAVLGAYLSGHPV 925 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + Y+ + R++ + E A + + V+ +Q +T++G + +VT S+ + Sbjct: 926 EQYQQLGRQLQAQAVSELTA---NTRVTVLLYVIKIRQIRTKRGEPMAFVTGSDETADVS 982 Query: 1029 ANFFP 1033 FP Sbjct: 983 VTIFP 987 >gi|145595754|ref|YP_001160051.1| error-prone DNA polymerase [Salinispora tropica CNB-440] gi|145305091|gb|ABP55673.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440] Length = 1124 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 288/1052 (27%), Positives = 463/1052 (44%), Gaps = 81/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L H+++S L+GA + ++ A+A+TD + + + F++ A A + + Sbjct: 74 YAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPTV 133 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D+ P P ++LL EGY RL +SR L K Sbjct: 134 FGAELSLDLPG-----APNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPI 188 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L+ + + +++LTG G + A A + L LFG + + V L Sbjct: 189 YGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 248 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + +LA LP VATNN + + L AV + + D Sbjct: 249 HGHPIDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWL 308 Query: 248 VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM + F+ P A+ E +F LQ+ AP LP + Sbjct: 309 PAAGAAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASG----HT 364 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR+ G R H + Y +L+ ELN+I + F GYFL+V D + + Sbjct: 365 EMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVYDIVTF 419 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++ +I GRGS A S YAL IT++D +R LLFERFL P+R PD D+D R Sbjct: 420 CREQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESSR 478 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI++V +YG E AQ+ S + ++A+RDV +A Q D K I + Sbjct: 479 REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 537 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A + + ++ + ++ RH H+ G+VI DRP+ ++ P+ Sbjct: 538 -------------AAADVEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVE 584 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L L D + R ++L + DD Sbjct: 585 WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR---LELGDMTLDDD 641 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L +G+FQ+ES L ++P C D++ V+L RPGPI ++ Y R Sbjct: 642 EVYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHPYIRR 701 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 KNG+E + HPL+ L++T GV ++QEQ+MQ+A L+G+ +EAD LRRAM K+ E Sbjct: 702 KNGQEPVTFPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSAE 761 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +R +G ++ GI+ +A +++ L FA YGF +SHA ++A + Y ++W+K ++ Sbjct: 762 RMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 821 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822 P FLAA + + + DAR+ +++ P VN Sbjct: 822 PAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRWGSQPG 881 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 P + +G + L +++ +G A I A P+ + D RV L Sbjct: 882 EPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRV---GLTAAQ 938 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE+L A A CFG +R Q L S A +R + GT + Sbjct: 939 LEALATADAFACFGVTRRQALWSAG----AAAQEHPDR------LPGTVPGTVA-----P 983 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + R + G HP + L +G G +R+ +V Sbjct: 984 TLPGMGAVDRLVADVWATGLSPESHPARFVREQLDALGAVPIARLARVEPGRRVRVGGIV 1043 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++ + P Sbjct: 1044 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1073 >gi|254516583|ref|ZP_05128642.1| putative DNA polymerase III alpha subunit subfamily [gamma proteobacterium NOR5-3] gi|219675006|gb|EED31373.1| putative DNA polymerase III alpha subunit subfamily [gamma proteobacterium NOR5-3] Length = 1036 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 276/1036 (26%), Positives = 449/1036 (43%), Gaps = 69/1036 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S YS L GA ++ + AA AIAITD +L ++ A IQ I Sbjct: 3 YCELHCLSCYSFLRGASRPEELVAQAAASGYTAIAITDECSLAGVVKAHVAAREHNIQLI 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + + +V L Y L L+S K Sbjct: 63 IGSEFKLS----------------EGIHLVALAPNRTAYGELSGLISLGRRRS-PKGEYE 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L + L++ I+R + +L +R+++ +Q Sbjct: 106 VTLRDVIFHLKRCLLIWLPKDDSEINRGYGK-----------QLARLCRERVWIGVQYLL 154 Query: 191 GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D R + +Q LA +LPL+A + HDV+ A+ ++ V++ R+ Sbjct: 155 GNDEIRRYRALQSLASALQLPLLACGDVQMHCATRKPLHDVMTALRYNCSVAELGSRRLP 214 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 RS LE T+ +ARRC F L P + + + Sbjct: 215 NA-QQHLRSINQLERLYPRSLLEETLNVARRCQFSLSELRYEYPEEVVPKG----HNARD 269 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G R G RQR++ EL +IA + + YFL V D +++A+ Sbjct: 270 YLRELTWQGANQRWPDG------TPSVIRQRIEKELALIAELDYEYYFLTVYDIVRFARD 323 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A SV Y L IT++ P + SLLFERF++ +R PD D+DF +RR+E Sbjct: 324 RGIL-CQGRGSAANSVVCYCLFITEVSPEKISLLFERFISRERDEPPDIDVDFEHERREE 382 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ +KY R A T + +A++A+RDVG+AL + VD L K + Sbjct: 383 VIQYIYDKYSRRRAALAATVITYRARSAVRDVGKALGLDPIFVDDLAKSLAWWDKQRDLE 442 Query: 490 QAIADDSRFREARLADPSVDRLLEI-SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++ + P+ +L Q++ G RH S H G VI P+SQLVP+ Sbjct: 443 ARFSEHGLKTGQQDDKPNTAQLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPVENA 502 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHE 607 +D V Q++ IE GL+K D L L L+ ++KSL + + + L IP +D Sbjct: 503 SMADRTVIQWDKDDIEALGLLKVDILALGMLSAIRKSLALVHRYDPRIRQLQDIPAEDMA 562 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +L ++G+FQ+ES L ++P C D++ +++ RPGPI +V+ R+ Sbjct: 563 TYRMLQRADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 622 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E I + +L+ T GV I+QEQV+++A + +G++ EAD LRRA+ + Sbjct: 623 QGLESISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFTGGEADQLRRAITNWGRNSK 682 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +++ G G S+ A +FE + F YGF +SH+A++A+++Y ++W+K H+P Sbjct: 683 LLSFEKKLTDGMLSRGYSEDYAQRLFEQIKGFGGYGFPESHSASFALLAYVSSWLKCHHP 742 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYY 837 F + + + QDAR+ + + VN D ++ D+ I Sbjct: 743 GAFYVGLLNSQPMGFYTPSQLIQDARRHGVITLAADVNHSDWDHQLLDDGEQGTGAPIRL 802 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L IKG+ AR I A P+ + D R + LNRR +E+LV A AL Sbjct: 803 GLRLIKGLSKDAARRISAARRHSPYRQIADLRKRAE---LNRRDMEALVDADALVSLSGH 859 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R Q + + A+ + + + + + + + R Sbjct: 860 RHQARWQV-MALEPARPLLEYEQQATGALLSDD----------VCLPEPAIAESVIADYR 908 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 G HPL + + K ++ A G +R+A +V +Q+ T G + + Sbjct: 909 STGVTLRAHPLALLRGQAPFNSCKRQQDLAALNDGRFVRIAGLVTCRQRPGTASG--VLF 966 Query: 1018 VTFSEPAKEYEANFFP 1033 +T + +P Sbjct: 967 LTLEDETGNNNVVVWP 982 >gi|82703712|ref|YP_413278.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC 25196] gi|82411777|gb|ABB75886.1| error-prone DNA polymerase, DnaE-like protein [Nitrosospira multiformis ATCC 25196] Length = 1040 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 267/1041 (25%), Positives = 455/1041 (43%), Gaps = 69/1041 (6%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + S P + L S+++ L+GA ++++ A A+AITD ++ + +A Sbjct: 1 MPSSAPDYAELHCCSTFNFLKGASMPEELVERAATLGYSALAITDECSMAGVVRAHAEAK 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G+ +IG + ++ +V L EGY L EL++ Sbjct: 61 KTGLHLLIGSEFVLEDG----------------LRLVGLAMNREGYGNLCELITLARQRS 104 Query: 124 QGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 K + RI + + L L I R + S V + + + LF R Sbjct: 105 A-KGTYRITRADFESCTDAPHLARLPDCLILLIPRRNQADGSWV--EDMRWVRSLFPGRG 161 Query: 183 YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 +++++R + ++ A T +PLVA + D + A+ S + Sbjct: 162 WISVERLLHAGEEVWFERIRHAAETIGMPLVAAGDVHMHDRAHKPLQDTMTAIRLSQPL- 220 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + P+ R+ + PE L+ T+ IA RC+F L E Sbjct: 221 AACGYALQPNAEQHLRTRLELAQLYPPELLQETLSIAARCTFSLDELRY----EYPDELT 276 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + + LR G+ R +GA R++++ EL +IA +K+ YFL V Sbjct: 277 GTDETYTDYLRRMVENGMRWRFPKGASI------KVRKQIEHELKLIADLKYEPYFLTVF 330 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A+ I GRGS A S Y L IT+IDP R +LLFERF++ +R PD D+D Sbjct: 331 DIVSFARSQGIL-CQGRGSAANSAVCYCLGITEIDPERSNLLFERFISRERNEPPDIDVD 389 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RR EVI+Y+ +YG +R A T + + ++A++DVG+AL + ++ RL + Sbjct: 390 FEHQRRGEVIQYIYRRYGRDRAAIAATVITYRTRSAVQDVGKALGLDIERIRRLSTSLAR 449 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + + ++ P + +L+ ++ L G RH S H G V+ L + Sbjct: 450 WDKSSDINKRLGEN----GFDPGSPVIRQLILLTTLLYGYPRHLSQHVGGFVLTRDKLCR 505 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600 +VP+ + + Q++ + + GL+K D L L L+ + ++LD + ++RGV + Sbjct: 506 IVPIENAAMPNRRIIQWDKDDLAEVGLMKVDVLALGMLSAIHRALDLISSRRGVPFQMQD 565 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 IP +D +TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V Sbjct: 566 IPPEDEKTYDMICKADTIGVFQIESRAQMSMLPRLRPRTFYDLVVEVAIVRPGPIQGDMV 625 Query: 661 YNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + + ++K +P ++ L T GV I+QEQVMQ+A L +G++ EAD LRR+M Sbjct: 626 HPYLRRRQDKEKPDYPEGVETALARTYGVPIFQEQVMQVAMLAAGFTSGEADQLRRSMAA 685 Query: 720 K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K + E+ I G + G ++ A IF + F +YGF +SHAA++A++ Y +AW Sbjct: 686 WKRKGGLGAFHEKLIDGMTNRGYTREFAERIFRQIEGFGEYGFPESHAASFALLVYVSAW 745 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834 +K H P FL A + + QDA + +QI P V + + + Sbjct: 746 LKCHEPAAFLCALLNSLPMGFYSASQLIQDAGRHGVQIKPVDVTISNWECILEEQEDKAL 805 Query: 835 ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891 + L +KG+G A I+EA F++ +D +R LN + +L A AL Sbjct: 806 QPIVRLGLNRVKGMGLEAATRIVEAREIASFENPDDLANRAS---LNTAEVHALARADAL 862 Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951 R Q L S+ + ++ H K TL Sbjct: 863 RTLSGHRRQTLWSVASHIT------------QRDLMRHAPA----KETLPVIPAAPEGEE 906 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + HPL + +P L M ++ E G +R +V +Q+ T Sbjct: 907 IIADYASTRLTLRRHPLALLRPTLASMNLRSAMELSDYPTGRLVRTTGIVTCRQRPGTAS 966 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G + +VT + + Sbjct: 967 G--VMFVTLEDETGITNVVLW 985 >gi|259503193|ref|ZP_05746095.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri DSM 16041] gi|259168850|gb|EEW53345.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri DSM 16041] Length = 1114 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 339/1028 (32%), Positives = 536/1028 (52%), Gaps = 49/1028 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V L+VHSSYSLL+ + +++ A+A+TD N L+ A++F A AG++P+ Sbjct: 3 YVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDENVLYGAVDFYNTARQAGLKPL 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G Q+ + D + + LL GY+ L++L +R +Q + Sbjct: 63 LGLQIMASLGD----------VAGSQLKLTLLAKNERGYRNLMDLSTRQQTTNQRAEPAT 112 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 I + L + + +++L + S + K++ G LY+ + + Sbjct: 113 I--AELSPLLKDLVVIL--PVQLTVINLVRQGSD-----WIDPLKQIAGSSLYLGI--NL 161 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249 D + + + A + L AT +L+ D A L A+ + + T Sbjct: 162 QLDEVERASLQRFAQAAGVLLAATTPVDYLNASDLFAAKTLQAIGQGAQLTDLDAQVAAT 221 Query: 250 PDHYLKNRSEMVS--IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 DHYL R ++ + L A+ NT IA +C+ L+ AP+LP + + Sbjct: 222 GDHYLPARQQIEQAYQQAGLAAAIANTAAIADQCNVELKFQAPVLPHYQTPHGE----AP 277 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L +AGL+ R +A GY A DYRQRLD EL VI RM F YFLIV D + +A Sbjct: 278 ADYLHQLCLAGLKER----PVAAGYSAADYRQRLDHELAVIHRMGFDDYFLIVWDVMNFA 333 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R MPD D+D +RR Sbjct: 334 HRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNRR 393 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +KYGHERVAQIITFG+L AK LRDV R + + L +P + + Sbjct: 394 EEVLKYVHDKYGHERVAQIITFGTLAAKQVLRDVSRVFNLTKFETASLLDTLPKGGSFTL 453 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 QA+ + R + P + +L ++Q+LEGL RH STHAAGIV+ PL ++VP+ Sbjct: 454 E-QALGESQRLKNLLNDQPKLRQLFRVAQQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ- 511 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 + L +TQF +E GL+K DFLGL+ L+++ ++ + QR + L + D Sbjct: 512 EGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTIQMIRQRKPQFSLDQVSLADPA 571 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T G+FQ ES+G+R L + PD EDI+A+ +LYRPGP++NI + RK G Sbjct: 572 TLRLFQRGQTDGVFQFESAGIRNVLTALHPDQFEDIVAVNALYRPGPMENITHFIARKRG 631 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 +E I + P+L T G+++YQEQVMQ+A ++G++L EAD+LRRAM KK K+ MD Sbjct: 632 QELIQLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMDS 691 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + +F++GA G +A +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP EF Sbjct: 692 MRAKFMAGAQAKGYQPALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTEF 751 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A + E + + + A++ +++ P +N F V D +IY+ L AIKG+ Sbjct: 752 YTALLNAESNVTKLRQHVTN-AQKMGVKVNGPRINLSQAQFAVHDQQIYFGLTAIKGLRR 810 Query: 848 TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 +++ A+ PF + D +R+ K VL L++AGA D GY+R ++++SL Sbjct: 811 DFVADLLQEREANGPFKDIRDLINRLPDKWRKEEVLTPLIYAGACDGLGYNRAEMVESLP 870 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 N+ + + G S + ++ + R E +LG Y SGH Sbjct: 871 NLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSGH 921 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025 P+ Y+ + ++ E + L + T+K + +V+ S+ + Sbjct: 922 PVSQYRQLASRLRSGRITEL---RPNQRVTLIVFTNRVKVIHTKKDHRPMAFVSASDESG 978 Query: 1026 EYEANFFP 1033 + FP Sbjct: 979 LVDVTVFP 986 >gi|325109561|ref|YP_004270629.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces brasiliensis DSM 5305] gi|324969829|gb|ADY60607.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces brasiliensis DSM 5305] Length = 1061 Score = 585 bits (1509), Expect = e-164, Method: Composition-based stats. Identities = 273/1035 (26%), Positives = 453/1035 (43%), Gaps = 69/1035 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L+ S++S LEGA + ++++ A A+AITD N+L + A AGI + Sbjct: 31 FAELRCLSNFSFLEGASHPDELVERAAELGYRALAITDRNSLAGVVRAHVAAKQAGIHLL 90 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG +L TP ++P IV+L GY RL L++R K + Sbjct: 91 IGAEL---------------TPVDSLP-IVVLARNRAGYGRLCRLITRGRTR-APKGACE 133 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + E +E LI G + V + L ++ +F D Y + RH Sbjct: 134 LTFQDIAE-HSEDLI---GCVPLSVRPTETPQEESVFRRELSRYRDVFQDSGYGLVHRHL 189 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248 D ++LA L VA+N+ + DVL A+ H V R Sbjct: 190 SDRDDLSVHAQLKLAEGSGLTPVASNDVHYHLPNRRVLQDVLTAIRHRCPVDSLGFRMFP 249 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK +M ++F + PE + T +IA +C+F L P + E Q Sbjct: 250 NGERYLKTPGQMRALFGNCPELVTRTADIANQCTFSLDELRYEYPEELCPE----QTTPM 305 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR G R G RQ +++EL +IA +K+ YFL V D + +A+ Sbjct: 306 EHLRQLTWRGAAGRYPDG------TPDHVRQLIEYELALIAELKYEAYFLTVHDLVHFAR 359 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A S + L +T +DP +LFERF++ +R PD DIDF +RR+ Sbjct: 360 SRGIL-CQGRGSAANSAVCFCLGVTSVDPAYTQVLFERFISKERDEAPDIDIDFEHERRE 418 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KYG ER T + + K+A+RDVG+AL + ++ L Sbjct: 419 EVIQYIYQKYGRERAGMTATLITYRLKSAVRDVGKALGLSQDCLETLAAGFERSNELQTL 478 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 Q + + L + + G RH S H G+V+ L ++VP+ Sbjct: 479 SQRMNE----AGVSGGSTLGQFLRRLVVDILGFPRHLSQHTGGMVMTQGALCEVVPIENA 534 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607 V +++ ++ G++K D L L LT ++K D L + + L+ +P +D + Sbjct: 535 SMPGRTVVEWDKNDLDALGILKVDCLALGMLTAIRKGFDLLRESYGRDLSLATVPAEDPQ 594 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY ++ T+G+FQ+ES L ++P + D++ V++ RPGPI +V+ R+ Sbjct: 595 TYAMIQQADTMGVFQIESRAQMSMLPRLRPKEMYDLVIQVAIVRPGPIQGDMVHPYLRRR 654 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724 +G E + I +L+ T GV I+QEQ M++A + +G++ EAD LRRAMG K Sbjct: 655 DGLEAEEYPNEQIRDVLQRTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMGAWRKSGV 714 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 MD+ ++ ISG +G + A +F + F +YGF +SHAA++A++ Y +AW+K HYP Sbjct: 715 MDRFHQKLISGMLAHGYGRDFAERLFNQIRGFGEYGFPESHAASFALLVYVSAWLKCHYP 774 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYYS 838 FLAA + + + + +DARQ +++ P VN + + + Sbjct: 775 DVFLAALLNSQPLGFYQPAQLVRDARQHGVEVRPVDVNFSDWNCTLEAQPQSSCQAVRLG 834 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 I G+ A I+ A F ++++ +R VL L + A SR Sbjct: 835 FRQITGLSQRDAEAIVAARKGGAFQTVDEIANRTGVAN---AVLSRLARSDAYSSLQLSR 891 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 L + + + + + + + ++ R Sbjct: 892 RTALW----------------ESLPQRLSNSLLESQQPDAIPDALPIMPALTEVIHDYRH 935 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 G HP+ + L ++ + + +R+A +V+ +Q+ T KG I ++ Sbjct: 936 SGLSLKDHPVRFLRKRLTQLQAVPMDTLGSYPVDRRVRVAGLVLLRQRPGTAKG--ITFM 993 Query: 1019 TFSEPAKEYEANFFP 1033 T + P Sbjct: 994 TLEDETGHANLIVHP 1008 >gi|257094455|ref|YP_003168096.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046979|gb|ACV36167.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1042 Score = 585 bits (1509), Expect = e-164, Method: Composition-based stats. Identities = 262/1048 (25%), Positives = 435/1048 (41%), Gaps = 92/1048 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA ++++ A A+AITD +L + + A G+Q Sbjct: 6 PFYAELHCCSNFSFLRGASHPEELVERAQALGYSALAITDEASLAGVVRAHKAARERGLQ 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + +VLL GY L L++ K Sbjct: 66 LIIGAEFRLTD------------ARQPGSRLVLLAQNRAGYGNLSALITLARRRSA-KGE 112 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF------FNSSQVAEKRLLTFKKLFGDRL 182 R+ + ++ L+ L SG + + + + F +R Sbjct: 113 YRLYRNDFEKP---DLVAL---RSGALPDCLALWIADADADTDASAEEGRWLASRFPNRS 166 Query: 183 YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 ++ ++ H D R + +++LA LP VA + D L A+ T + Sbjct: 167 WLAVELHSGPDDAARLATLLELAKASGLPAVAAGDVHMHLRARRPLQDTLTAIRLYTTLF 226 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 + R+ + E L T+ +A RC F L P + + Sbjct: 227 AAGHALF-ANGERHLRTRLRLARIYPAELLAATLLVAARCHFSLDELRYEYPDEMVPDG- 284 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + LR + GL R R R++ EL +I + + YFL V Sbjct: 285 ---QTPATFLRAEVTEGLRRRYPD------VVPPGVRARVEHELALINELAYEPYFLTVY 335 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + +A+ +I GRGS A S Y L IT++DP R +LLFERF++ +R PD D+D Sbjct: 336 DIVNFARSRHIL-CQGRGSAANSAVCYCLGITEVDPARSNLLFERFISRERGEPPDIDVD 394 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F +RR+EVI+Y+ KYG ER A + + + ALRDVGRAL +Q+D L + Sbjct: 395 FEHERREEVIQYLYAKYGRERAALTAAVVTYRTRGALRDVGRALGFGSAQIDALTASLAW 454 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 + R A P V + L ++ L G RH S H G VI PL++ Sbjct: 455 WDKRDQLPGRL----RAVGLDPAAPRVAKWLALADALRGFPRHLSQHVGGFVISRGPLAR 510 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601 LVP+ V Q++ ++ GL+K D L L L+ + ++LD + R L + Sbjct: 511 LVPIENAAMPARTVIQWDKDDLDTLGLLKIDVLALGMLSAIHRALDLVGCR-----LPEV 565 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D Y ++ T+G+FQ+ES L ++P D++ V+L RPGPI +V+ Sbjct: 566 PAEDPAVYDMICAADTVGVFQIESRAQMAMLPRLRPRNFYDLVIEVALVRPGPIQGDMVH 625 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R++G+E+I + P I +L+ T GV I+QEQVMQ+A + +G++ EAD LRRAM Sbjct: 626 PYLRRRHGRERIEPMRPEIAAVLERTCGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMAA 685 Query: 720 K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K + +E+ I+G + G + A IF + F +YGF +SHAA++A++ Y +AW Sbjct: 686 WRRKGGLGPFEEKLITGMRQRGHDEAFAKRIFAQIQGFGEYGFPESHAASFALLVYVSAW 745 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832 +K H+P FL A + + + + QDAR+ +++ P +V+ + Sbjct: 746 LKRHHPAAFLCALLNSQPLGFYSLSQLVQDARRHGVEVRPATVSASGWKALLESAAPAIA 805 Query: 833 ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + LA+I G+ TA ++EA PF ++ + +R Sbjct: 806 AGGPAVRLGLASIVGLSQATAVRLLEARKQGPFANIAELAARARLT-------------- 851 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKN------RTNKHENIFAHEKGTFSDKITLEKF 943 R L + + + ++ + + L + Sbjct: 852 -------HRDLDLLAAADALASLSGHRRQAAWAAAGVAVQLDLLSG----NAPPEDLAEL 900 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + + HPL + + L + R A +V Sbjct: 901 AIPSEGEDLIADYASTRLTLGRHPLALLRERLSAQRFVSASQLQRAPDRQLARAAGIVTC 960 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 +Q+ T G I +VT + Sbjct: 961 RQRPGTASG--IVFVTLEDETGLANIVV 986 >gi|81428645|ref|YP_395645.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei subsp. sakei 23K] gi|78610287|emb|CAI55336.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei subsp. sakei 23K] Length = 1110 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 336/1027 (32%), Positives = 531/1027 (51%), Gaps = 46/1027 (4%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV LQV S+Y+LLE + +++ A ++A+TD N ++ ++F + A AA I+P Sbjct: 2 AFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++G +++ G ++LL GYQ ++++ +++ + Sbjct: 62 LLGITIEV----------GGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQSE----- 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188 + +Q + + L+++T G + R N + A+ + K + D LY+ + Sbjct: 107 LVPFEAVQSLLQQ-LVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISA 165 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 + R R + QL+ +PLVA + +L ED A VL + T V+ + Sbjct: 166 KQAASRQRVP-LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQTPQAP 224 Query: 249 TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + + L EA+ NT +IA +C L LP+F + Sbjct: 225 GGYFLEDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAG----QSA 280 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L+ ++ AGL Q + Y+ RLD+EL VI M F+ YFLIVAD +Q+A Sbjct: 281 ATYLKQQSQAGL-----QARFKTQPIPETYQTRLDYELQVINEMGFADYFLIVADVMQYA 335 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + NI GPGRGS AG++ AYAL ITD+DP+R+ LLFERFLNP+R +MPD D+D +RR Sbjct: 336 HQQNIMTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRR 395 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 DEV+ YV KYG +AQIITFG+L AK AL+DVGR + ++ K IPN + Sbjct: 396 DEVLDYVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKITL 455 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 +A F+ L E +Q++EGL RH STHAAGIV+ PL++ V + Sbjct: 456 -QEAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQ- 513 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606 ++ +TQ M +E+ GL+K DFLGL+ L +L + Q G + IP DD Sbjct: 514 SGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQPFNPQNIPLDDP 573 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T GIFQ ES+G++ L ++P EDI+A +LYRPGP++NI + +RK+ Sbjct: 574 ATLALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMENIDTFIDRKS 633 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GK + + +L+ T G+++YQEQVMQ A + G++L EAD+LRRAM KK K +D Sbjct: 634 GKVPVTYPDDSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVID 693 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +FI GA G ++ A +++ + +FA+YGFN+SHA AY+ I++ A++K H P Sbjct: 694 ASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQPEA 753 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F AA + ++ K K + +A++ + ++PP +N FKV D I + L +IKG+ Sbjct: 754 FFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAGIIFGLYSIKGLR 813 Query: 847 TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+ E PF S+ F R+D+K L + L +L+++GA D F +R LL +L Sbjct: 814 RDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLMNL 873 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965 D++ + N ++F + S + R + E LG Y SG Sbjct: 874 DDLLDSVKLAGDN-----MSLFEIL------APKEKTVSNLTLTERLDKEAEYLGAYLSG 922 Query: 966 HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025 HP++ Y+ + R + + N+RL V + +T+KG ++ +VT + Sbjct: 923 HPVEKYERVRRYYHVPEVSDLAP---NQNVRLVLFVRRIKVIRTKKGEQMAFVTGQDATG 979 Query: 1026 EYEANFF 1032 E F Sbjct: 980 EISVTLF 986 >gi|254294846|ref|YP_003060869.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814] gi|254043377|gb|ACT60172.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814] Length = 1096 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 263/1056 (24%), Positives = 449/1056 (42%), Gaps = 88/1056 (8%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 +P + L V +++S L GA + + AI I D N L + A G+ Sbjct: 10 TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 + +IG +LD+ S++ + Y RL L+S + K Sbjct: 70 RLLIGARLDLTDG----------------ISLLCYPTDRAAYGRLSHLLSDGKMR-APKG 112 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL----- 182 I L + + ++ V E++L + F L Sbjct: 113 ECHISLENVIAYADGQVFIVIPPMQPD----------AVFEEKLQILMEKFASSLEGSSP 162 Query: 183 ------YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 Y+ L + G +R R +Q+ LA + LPL+ATNN L+ D+L + Sbjct: 163 SPDKKIYMALIHQYGGKNRERLAQIAALASKYNLPLIATNNVLYHVSSRRPLQDILTCIR 222 Query: 236 HS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294 ++ + +LK+ SEMV +F EA+E+T +I C F L P Sbjct: 223 EHVSLEDAGYLLEPNAERHLKSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDELRYEYPD 282 Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354 K + L + A G E R +G + ++ L++EL +I + + Sbjct: 283 EPVPRG----KTPQEHLIDIAWKGAEWRYPEGV------PEKVQKSLNYELGLIGELHVA 332 Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414 YFL V D ++WA++ I GRGS A S Y L IT +DP LLF+RFL+ +R Sbjct: 333 QYFLTVHDIVKWAREQEIL-CQGRGSAANSAVCYCLGITSVDPKVNDLLFDRFLSRERKE 391 Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474 PD D+DF +RR+EVI+YV +YG R A T S + ++A+R+V +A + Sbjct: 392 PPDIDVDFEHERREEVIQYVYERYGRHRAALTATVISYRPRSAVREVCKAFGLSEDVATA 451 Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534 L K +S + + + ++ R+L +++L G RH S H G V+ Sbjct: 452 LAKTNWGAYGKTISDKQAGES----GLDPRNETIQRVLHFTRQLIGFPRHLSQHVGGFVL 507 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRG 593 PL + VP+ + +++ I+ G++K D L L L+ ++K +G Sbjct: 508 TQGPLVETVPIGNAAMDERTFIEWDKDDIDALGIMKVDILALGMLSCIRKCFDMLRLYKG 567 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 ++ +L+ +P DD Y +L ++G+FQ+ES L ++P D++ V++ RPG Sbjct: 568 LEYNLATVPQDDPAVYDMLCKADSVGVFQVESRAQMSMLPRLRPRVFYDLVIEVAIVRPG 627 Query: 654 PIDNIVVYNNRKNGKE--KIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLS 703 PI +V+ + K + P ++ +LK T GV ++QEQ MQ+A + Sbjct: 628 PIQGDMVHPYLRRRKRIETVRYPSPAPEHGPPDELENILKRTLGVPLFQEQAMQVAIDAA 687 Query: 704 GYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 ++ EA+ LR+AM + M +++FI+G + G A F + F DYGF Sbjct: 688 KFTPDEANGLRKAMATFRRNGTMGLYEDKFINGLTNRGYKPDFAQACFNQVKGFGDYGFP 747 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA++A++ Y ++W+K H+P F AA + + + +DAR+ ++++ PP VN Sbjct: 748 ESHAASFALLVYVSSWLKCHHPEVFCAAILNSQPMGFYAPAQLVRDAREHDVEVRPPDVN 807 Query: 823 TPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877 D + + L I+G+ T + +M+ D + E R L Sbjct: 808 YSDWDSLLEPKEDGTFAVRLGLRQIEGLSETHIQTLMDRRQDGYYT-PEILRQRT---GL 863 Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937 R LE L A A G R + L ++ + A +FA + Sbjct: 864 PRGALERLAAADAFRSMGLDRREALWAIRGQTQEAPSE----------LFACSATKEQGR 913 Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997 K S + HP+ + +MGI+ +E G+ + + Sbjct: 914 EAEVKLPEMPMSEHVIQDYHATRLSLKAHPVSFLRERYSRMGIRTTKEIYELRSGSRVMV 973 Query: 998 AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+ +Q+ T G + +VT + +P Sbjct: 974 GGVVLVRQRPGTASG--VVFVTLEDETGVANLIVWP 1007 >gi|148543981|ref|YP_001271351.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus reuteri DSM 20016] gi|184153376|ref|YP_001841717.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227364894|ref|ZP_03848939.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus reuteri MM2-3] gi|325682481|ref|ZP_08161998.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri MM4-1A] gi|148531015|gb|ABQ83014.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus reuteri DSM 20016] gi|183224720|dbj|BAG25237.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112] gi|227070041|gb|EEI08419.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus reuteri MM2-3] gi|324978320|gb|EGC15270.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri MM4-1A] Length = 1115 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 340/1031 (32%), Positives = 536/1031 (51%), Gaps = 53/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+P Sbjct: 2 DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L + + + T +V L GYQ L++L + K + Sbjct: 62 ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ + + E I++ + L D + + + + Sbjct: 110 SLTIAQISPLLGELFIII--PPQSTVFSVLA--QPTSILTELANLGD--DDSVLLGV--N 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246 D + + QL+ LPLV T+ +L+ D A VL A+ + + Sbjct: 162 SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + K + L A + TVE+A C+ LQ AP+LP F + Q Sbjct: 222 RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + + Sbjct: 280 --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D +R Sbjct: 334 AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 394 RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 454 LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D L +TQF +E GL+K DFLGLK L+++ +L + Q DL I F+D Sbjct: 513 -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPTFDLQKINFNDQ 571 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 572 LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M+ Sbjct: 632 GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K HYP Sbjct: 692 DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M E N+EK+K+ DA+QF ++I P +N F + D +Y+ +AIKGV Sbjct: 752 FFTALMNAE-TNIEKLKRHVGDAKQFGVKISSPRINISESSFLLHDETVYFGFSAIKGVR 810 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+E + F L +F +R+ + + ++E L+++GA D GY+R +++ +L Sbjct: 811 RDFIAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMGYNRAEMIDAL 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963 + + +FA + +++ + R E LG Y Sbjct: 871 PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022 SGHP+ Y + +++ + + + + + T++ R + +V ++ Sbjct: 919 SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 976 ETGAIDITVFP 986 >gi|54022882|ref|YP_117124.1| error-prone DNA polymerase [Nocardia farcinica IFM 10152] gi|71151830|sp|Q5Z1D1|DNAE2_NOCFA RecName: Full=Error-prone DNA polymerase gi|54014390|dbj|BAD55760.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM 10152] Length = 1146 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 281/1069 (26%), Positives = 475/1069 (44%), Gaps = 85/1069 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS+YS L+GA ++++ AIA+TD + + + F++ A GI + Sbjct: 62 YAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIATV 121 Query: 71 IGCQLDI-----DMQDNLKMTNQGK-------------------------TPFPTVPSIV 100 G +L + + + + +G+ P P P ++ Sbjct: 122 FGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHLL 181 Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160 +L EGY+RL ++ +L K +R + L +LTG G + A Sbjct: 182 VLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTALA 241 Query: 161 FN------SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLV 212 + AE L + FG DR+ V L H D R + ++ LA LP++ Sbjct: 242 DDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVGLPVL 301 Query: 213 ATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271 AT + F E L A+ ++ +L++ +EM +F+ P+A+ Sbjct: 302 ATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAACPDAV 361 Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331 N V ++R C+F L++ AP LP F + D E + LR + G R Sbjct: 362 ANAVALSRECAFDLRLIAPQLPPFAVPDGHD----ENSWLRELVLRGAARRYG----PPH 413 Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391 + YRQ L+ EL VIA + F GYFL+V D + + ++N I GRGS A S +A+ Sbjct: 414 ANPPAYRQ-LEHELEVIATLGFPGYFLVVHDIVSFCERNGIL-CQGRGSAANSAVCFAIG 471 Query: 392 ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451 IT++DP+ LLFERFL+P+R PD DID DRR+E I++V +YG E AQ+ + Sbjct: 472 ITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVANVIT 531 Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511 + K+A+RD +AL Q D K + A +++ Sbjct: 532 YRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTGVG--------------AETGTDIPEQV 577 Query: 512 LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571 L ++ LEGL RH H+ G+VI DRP++ + P+ + V Q++ GL+KF Sbjct: 578 LRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGLVKF 637 Query: 572 DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630 D LGL L+ L +D + + V+V L + + Y +L+ ++G+FQ+ES Sbjct: 638 DMLGLGMLSALHYMIDLVREHEGVEVRLHELDLKEPAVYEMLSRADSVGVFQVESRAQMA 697 Query: 631 ALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688 L ++P D++ V+L RPGPI ++ Y R+NG E + HP ++ L T GV Sbjct: 698 TLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTYDHPALENSLGRTLGV 757 Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER--FISGASKNGISKTIA 746 ++QEQ+MQ+A ++G++ +EAD LRRAMG K E ++ + + A +GI+ +A Sbjct: 758 PLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGMAELHGITGEVA 817 Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806 I+E L FA++GF +SH+ ++A + + +AW K H+P F A + + + Sbjct: 818 DRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQPMGFYSPQSLV 877 Query: 807 QDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863 DAR+ + + P VN + + + + LA ++ +G+ A I+ A P+ Sbjct: 878 ADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERIVAARVEHGPYT 937 Query: 864 SLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 S+ D RV+ L E+L AGA D G S + + + Sbjct: 938 SVLDLTGRVE---LTVAQAEALATAGAFDSVTGPSGAE--------RSGGRRAALWAAGA 986 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 AH ++ + G +P + + + ++G+ Sbjct: 987 AARERAHLLPGTGPAADAPALPGMSALELAAADVWATGISPGSYPTEFLRARMDELGVIP 1046 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + G+ + + V +Q+ T G + ++ + Sbjct: 1047 AGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGMVNVVC 1093 >gi|172064770|ref|YP_001812420.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6] gi|171998255|gb|ACB69171.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6] Length = 1049 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 279/1044 (26%), Positives = 461/1044 (44%), Gaps = 77/1044 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ LQV S +S L GA + + A AIAITD +L + +A AA + Sbjct: 10 PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + D L +GY L E +S + + K + Sbjct: 70 LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117 Query: 129 VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179 R+ ++ + + +L+ F + Q + ++ F ++FG Sbjct: 118 YRLAPLDVEHPEAPFTHLRTLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168 Query: 180 DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 DR +V L H R D V ++A H +P+VAT+ L DVL + Sbjct: 169 DRAWVALTLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228 Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 V + + P+ RS + ALE TV +ARRC+F+L P + Sbjct: 229 PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFLLDDLKYEYPDELVP 287 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 D LR + G R G D + +++ EL +IA +K+ YFL Sbjct: 288 AGTD----ATTYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFL 337 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 V D +Q+A++ I GRGS A S Y L +T++DP R S+LFERF++ +R PD Sbjct: 338 TVYDIVQFAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDI 396 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF RR+EV++Y+ KYG +R A + + ++ALR+ G+AL + + VDR+ K Sbjct: 397 DVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQ 456 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + LQ A+ P + + +L G RH S H+ G VI Sbjct: 457 HHWFDSRADLLQRFAE----AGLDPEAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597 L++LVP+ D + Q++ IE G++K D L L L++++++LD + +RG + Sbjct: 513 LTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFE 572 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657 L IP +D TY +L ++G+FQ+ES L ++P C D++ V++ RPGP+ Sbjct: 573 LQDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632 Query: 658 IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 +V+ + + E++ ++ L T GV I+QEQVMQ+A L +G+S EAD LRR Sbjct: 633 GMVHPFLRRRQGLERVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692 Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM K ++ ER ++G + G + A +IF + F +YGF +SHAA++A++ Y Sbjct: 693 AMAAWKRKGGLEPYHERLVNGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +AW++ H P FL A + + + QDAR+ ++++P VN D + Sbjct: 753 SSAWLRRHEPAVFLTALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPT 812 Query: 835 ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + + ++G+ A I A A + F + D R +L+R L+ L A A Sbjct: 813 TEAPVRLGFSLLRGMREDVAGRIELARAARSFVDVADLARRA---RLDRHDLQVLARANA 869 Query: 891 LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 L G +R L + + + + Sbjct: 870 LRSLAGGNRRAALWLAAAAVPDRDLLRATERDD----------------AVPALPQASEG 913 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + +GF HPL + + L ++ E+ G R +V +Q+ T Sbjct: 914 KEIVTDYHAMGFTLGRHPLALLRERLALDRLQSAEQLQTLRSGQLARACGLVTVRQRPGT 973 Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + + +P Sbjct: 974 ANG--VLFMTLEDETGQVNVILWP 995 >gi|154244758|ref|YP_001415716.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] gi|154158843|gb|ABS66059.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2] Length = 1059 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 286/1051 (27%), Positives = 460/1051 (43%), Gaps = 91/1051 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P++ LQV S +S L GA S + AA A+A+TD N L + + A AG Sbjct: 2 SAPAYAELQVTSHFSFLRGASSAEELFATAAAMGIGALAVTDRNTLAGIVRAHEAAKEAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ IIGC+LD+ S+++ + Y RL L+S GK Sbjct: 62 VRLIIGCRLDLVCGM----------------SVLVYPTDWAAYSRLCRLLSLGKGR-AGK 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRL 182 + L G EGLI++ +A++ RL + FGDR Sbjct: 105 ARCHLEWDDLVAYG-EGLIVVLA--------------PDLADETCGLRLRRLRDAFGDRA 149 Query: 183 YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R R D+ R ++ LA +P V TN+ LF DV+ A+ H+ V Sbjct: 150 YLGLTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNVTVD 209 Query: 242 Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R D YLK EM +F+ PEAL T EIA RC F L P Sbjct: 210 ALGIRRERHADRYLKAPGEMHRLFARWPEALARTREIADRCRFSLDELRYQYPEER---- 265 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD + L G R +G ++ L EL +I ++ ++ YFL V Sbjct: 266 DDPALSPQETLERLTWEGAASRYPEGV------PEEVTAALKHELALIGKLDYAPYFLTV 319 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +++A+ I GRGS A S Y L IT IDP R LLFERF++ +R PD D+ Sbjct: 320 NSIVRFARSRGILR-QGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDV 378 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR+EVI++V YG ER A T ++K ALRDVG+A+ +P + L + Sbjct: 379 DFEHERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKAMGLPEDLIQTLSGQLW 438 Query: 481 NDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 V+ Q + D + R RL ++ +L G RH S H G V+ Sbjct: 439 GWSEAGVTEQQLRDLNLNPEDRRLRLTLE-------LAAQLRGAPRHLSQHPGGFVLTHD 491 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L LVP+ + +++ I+ +K D L L L+ +++ LD LA+ Sbjct: 492 RLDDLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRL 551 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+ IP +D TY ++ TLG FQ+ES L ++P D++ V++ RPGPI Sbjct: 552 DLASIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQ 611 Query: 657 NIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +V+ R+ G E++ P ++ +L +T GV ++QEQ M++A +G++ EAD+LR Sbjct: 612 GDMVHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLR 671 Query: 715 RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 ++M + K ++R ISG G + A F+ L F YGF +SHAA++A+I+ Sbjct: 672 KSMATFKHTGGVSKFRDRLISGMIARGYEEEFAARTFQQLEGFGSYGFPESHAASFALIA 731 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y +AW+K +P F AA + + + +DAR+ +++ P +N D + Sbjct: 732 YASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHGVEVRPVCINASRWDCTLEPT 791 Query: 834 ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + L +KG+ A ++ A D+ F S++D R + L+ + Sbjct: 792 GDESRFAVRLGLRMVKGLANAHAAAVVAARGDETFTSVDDLWRRA---GVPVAALDQIAA 848 Query: 888 AGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-- 944 A FG +R + ++ ++ +FA + Sbjct: 849 ADGFRPAFGLARREAQWAIKGLRDE-----------ELPLFAAASEREGQTVPELDEPAI 897 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + + +G HP+ + L + I E++A + A +V Sbjct: 898 ALRAMPAGREVVEDYGHIGLSLRRHPVSFLREDLARRRIVSCAEAMAAPDQRWLEAAGIV 957 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +Q+ + G + ++T + + Sbjct: 958 LVRQRPGSANG--VMFITLEDETGIANLVVW 986 >gi|304385057|ref|ZP_07367403.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus acidilactici DSM 20284] gi|304329251|gb|EFL96471.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus acidilactici DSM 20284] Length = 1127 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 301/1027 (29%), Positives = 520/1027 (50%), Gaps = 41/1027 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L V SSYSLL + ++ A+A+TD N ++ A+EF Q ++P Sbjct: 18 AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 77 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + +D ++VLL GY L+ + S K Sbjct: 78 IVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTEISAK--P 125 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188 + + L+ + L+++ ++ + A+ + +++ + L++ + Sbjct: 126 TLTFNDLRAYWKD-LVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI-- 182 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247 + + Q+A + + + +L+EED+ A VL + + + + Sbjct: 183 NGQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAK 242 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +++LK +E V + L +A T L++ I+ + + Q++ Sbjct: 243 GGGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIP--IVSPRLPQFATPNQQDS 300 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L L A + Y+ RLD EL VI M F+ YFLI+ D +Q+A Sbjct: 301 FTYLTQLCQQALTQVKENVPDA-----ERYQARLDHELAVIKEMGFADYFLIIHDVVQFA 355 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R MPD D+D D+R Sbjct: 356 HQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQR 415 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + V++YV ++YGH+ V QIITFG+L AK A+RDV R ++++++ LIPN + Sbjct: 416 EVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITL 475 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A R R+ + P + E + +LEGL RH STHAAGIV+ L + VP+ Sbjct: 476 KQAA-QTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ- 533 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D + ++Q++ ++E+ GL+K DFLGL+ L+L+ L+ + + + ++ I +D + Sbjct: 534 DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDPQ 593 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T G+FQ ES+G+R L + P ++A+ +LYRPGP++NI + RK+ Sbjct: 594 TLQLFQRGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDH 653 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E + +++ +L ET G+++YQEQVM++A + G SL +AD+LRRAM KK +++ Sbjct: 654 LEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQ 713 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + FI GA + G S+ IA ++ + FA+YGFNKSHA AY+ +++Q A++K HYP +F Sbjct: 714 MRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDF 773 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A + + N K K + Q+ ++ I + P +N + + +I AIKG+ Sbjct: 774 YTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRR 833 Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 +H++ F +++D+ R+ ++ ++ V++ L+FAGALD FGY+R +L + L Sbjct: 834 DFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLP 893 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + K + +N ++F T + L + + E+ +LG Y S H Sbjct: 894 ELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTYVSAH 942 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P++ + ++++ ++ A G + + S + +T+KG + + S+ E Sbjct: 943 PVERFAELIKQRRFVPIQQFKA---GEKVTSIVYIRSFRSIRTKKGEPMAFAKISDQTDE 999 Query: 1027 YEANFFP 1033 EA FP Sbjct: 1000 CEAVIFP 1006 >gi|330990447|ref|ZP_08314406.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1] gi|329762484|gb|EGG78969.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1] Length = 1053 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 276/1038 (26%), Positives = 464/1038 (44%), Gaps = 74/1038 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++ LQV + +S L GA S + ++ A A+ I D N+L ++ A GI+ Sbjct: 2 AYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGIRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ +++ + Y RL L+S GK Sbjct: 62 VVGCRLDLAD----------------FAPVLVYPTDRAAYARLCRLLSLGKAR-AGKGKC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + L G EGL+++ + L ++ F DR + L R Sbjct: 105 HLLWEDLVAWG-EGLLVI----------LLPDTADDACALHLRKLQEAFADRASMALTLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247 R D+ R ++ LA+ +P++ TN+ LF + + DV+ + + T + + R Sbjct: 154 RRPNDQMRLYELANLAHQARVPMIVTNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFARE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK +EM +FS PEA++ T EI RC F L A E + Sbjct: 214 RHADRYLKPPAEMARLFSRYPEAIDRTREIVARCRFSLDDLAY----QYPDEVSVPGQSP 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L G +G + R+ L EL +I RM ++ YFL V +++A Sbjct: 270 QQALEALTWEGAAAAYPEG------IPPEVRKTLTHELALIGRMDYAPYFLTVHSIVRYA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP R SLLFERF++ +R PD D+DF RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDIDVDFEHARR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 ++VI+++ YG A +AK ALRDVG+ + +P + L I + Sbjct: 383 EQVIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLIRTLSSQIWGW-GRKL 441 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A+ + L+D + L++++ L G+ RH S H G V+ L +LVP+ Sbjct: 442 DEDALDET----GIDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + +++ I+ +K D L L LT ++K LD LA+ L IP +D Sbjct: 498 AAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQHYTLQTIPAEDP 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 RTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKE 723 + G+EK + P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRAM Sbjct: 618 RAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRAMATFKNTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + + R I G + G T A IF+ L F YGF +SHAA++A+++Y ++WMK + Sbjct: 678 TVSRFRTRLIEGMTARGYPATFAERIFQQLEGFGSYGFPESHAASFAILAYSSSWMKCTH 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RIY 836 P FLAA + + + +DAR+ ++I P +N D + + Sbjct: 738 PDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPICINASRWDSTLEGPERNDGLFAVR 797 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895 + +KG+ A I+ A D+PF S++D R K + L L A A G Sbjct: 798 LGMNLVKGLANEDAARIVAARGDRPFTSVDDLWRRAGVKGV---ALTHLAEADAFQPGLG 854 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 +R + L ++ ++ +FA + + Sbjct: 855 LARREALWAIKALRDE-----------PLPLFAAAAVMREAEELDVLLQPMRDGAEVARD 903 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HP+ + L + G+ ++ + +++ +A +V+ +Q+ + +G + Sbjct: 904 YNRTGLTLRNHPVAFLRDDLSERGMVTCQQGLEARDRSSLSVAGLVLVRQRPGSAEG--V 961 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 962 VFMTLEDETAAINVIIWP 979 >gi|289425592|ref|ZP_06427368.1| error-prone DNA polymerase [Propionibacterium acnes SK187] gi|289153998|gb|EFD02687.1| error-prone DNA polymerase [Propionibacterium acnes SK187] Length = 1137 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 288/1077 (26%), Positives = 465/1077 (43%), Gaps = 105/1077 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HSSYS L+GA + +++ + +A+TD + L+ + ++ A A G+ I Sbjct: 60 YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 119 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG +L I + + Q P +++L + EGY+RL E ++ YL++ G K Sbjct: 120 IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 174 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L E+ +LTG G + + AE L LFG D + V L Sbjct: 175 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 233 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D + +LA H L VAT + + E +E L AV + + D Sbjct: 234 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 293 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 L++ +EM +FS +A++NTV +A R +F L+ P LP + Sbjct: 294 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 349 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ G +A + RL EL++I F+GYFLIV+D +++ Sbjct: 350 PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 401 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT +DP+ + L FERFL+ R PD D+DF R Sbjct: 402 AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 460 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV KYG AQ+ + + ++A+RD+ +AL Q D + + P Sbjct: 461 REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 520 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + D + ++Q++ GL RH H+AG+V+ P+ ++ P+ Sbjct: 521 LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 569 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 V Q++ + GL+KFD LGL L+ L S D ++Q L+ IP ++ Sbjct: 570 PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 629 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 Y +L ++G+FQ+ES AL ++P C D+ + L RPGP+ + Y Sbjct: 630 PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 689 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ G E + HPL++P+L+ T G+ ++QEQ+MQ+A + + ++AD+LRRAM K+ Sbjct: 690 RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 749 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D + + G + NGI A I+ + FA++GF +SHA ++A + Y +AW+K H Sbjct: 750 ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 809 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827 YP FLAA + + DAR+ + P V V Sbjct: 810 YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 869 Query: 828 ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856 F + + L+ + G+ TA I+E Sbjct: 870 EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 929 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + F SL+D RVD +E+L AGA D SR L + I A Sbjct: 930 RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 986 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + ++ R G + HP+ + L Sbjct: 987 DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1030 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + I +A +V +Q+ T G + ++ + P Sbjct: 1031 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1085 >gi|50843116|ref|YP_056343.1| error-prone DNA polymerase [Propionibacterium acnes KPA171202] gi|295131169|ref|YP_003581832.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] gi|71151831|sp|Q6A780|DNAE2_PROAC RecName: Full=Error-prone DNA polymerase gi|50840718|gb|AAT83385.1| DNA polymerase III, alpha chain [Propionibacterium acnes KPA171202] gi|291376583|gb|ADE00438.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137] Length = 1134 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 288/1077 (26%), Positives = 465/1077 (43%), Gaps = 105/1077 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HSSYS L+GA + +++ + +A+TD + L+ + ++ A A G+ I Sbjct: 57 YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG +L I + + Q P +++L + EGY+RL E ++ YL++ G K Sbjct: 117 IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L E+ +LTG G + + AE L LFG D + V L Sbjct: 172 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 230 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D + +LA H L VAT + + E +E L AV + + D Sbjct: 231 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 L++ +EM +FS +A++NTV +A R +F L+ P LP + Sbjct: 291 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ G +A + RL EL++I F+GYFLIV+D +++ Sbjct: 347 PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 398 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT +DP+ + L FERFL+ R PD D+DF R Sbjct: 399 AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV KYG AQ+ + + ++A+RD+ +AL Q D + + P Sbjct: 458 REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 517 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + D + ++Q++ GL RH H+AG+V+ P+ ++ P+ Sbjct: 518 LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 V Q++ + GL+KFD LGL L+ L S D ++Q L+ IP ++ Sbjct: 567 PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 Y +L ++G+FQ+ES AL ++P C D+ + L RPGP+ + Y Sbjct: 627 PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ G E + HPL++P+L+ T G+ ++QEQ+MQ+A + + ++AD+LRRAM K+ Sbjct: 687 RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 746 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D + + G + NGI A I+ + FA++GF +SHA ++A + Y +AW+K H Sbjct: 747 ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827 YP FLAA + + DAR+ + P V V Sbjct: 807 YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 866 Query: 828 ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856 F + + L+ + G+ TA I+E Sbjct: 867 EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + F SL+D RVD +E+L AGA D SR L + I A Sbjct: 927 RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 983 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + ++ R G + HP+ + L Sbjct: 984 DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + I +A +V +Q+ T G + ++ + P Sbjct: 1028 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1082 >gi|289428491|ref|ZP_06430176.1| error-prone DNA polymerase [Propionibacterium acnes J165] gi|289158323|gb|EFD06541.1| error-prone DNA polymerase [Propionibacterium acnes J165] Length = 1134 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 289/1077 (26%), Positives = 466/1077 (43%), Gaps = 105/1077 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HSSYS L+GA + +++ + +A+TD + L+ + ++ A A G+ I Sbjct: 57 YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129 IG +L I + + Q P +++L + EGY+RL E ++ YL++ G K Sbjct: 117 IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L L E+ +LTG G + + AE L LFG D + V L Sbjct: 172 VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 230 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D + +LA H L VAT + + E +E L AV + + D Sbjct: 231 HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 L++ +EM +FS +A++NTV +A R +F L+ P LP + Sbjct: 291 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ G +A + RL EL++I F+GYFLIV+D +++ Sbjct: 347 PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 398 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S YAL IT +DP+ + L FERFL+ R PD D+DF R Sbjct: 399 AQSQGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV KYG AQ+ + + ++A+RD+ +AL Q D + + P Sbjct: 458 REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 517 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + D + ++Q++ GL RH H+AG+V+ P+ ++ P+ Sbjct: 518 LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 V Q++ + GL+KFD LGL L+ L S D ++Q L+ IP ++ Sbjct: 567 PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 Y +L ++G+FQ+ES AL ++P C D+ + L RPGP+ + Y Sbjct: 627 PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ G E + HPL++P+L+ T G+ ++QEQ+MQ+A + + ++AD+LRRAM K+ Sbjct: 687 RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 746 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E +D + + G + NGI A I+ + FA++GF +SHA ++A + Y +AW+K H Sbjct: 747 ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827 YP FLAA + + DAR+ + P V V Sbjct: 807 YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 866 Query: 828 ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856 F + + L+ + G+ TA I+E Sbjct: 867 EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926 Query: 857 SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916 + F SL+D RVD +E+L AGA D SR L + I A Sbjct: 927 RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 983 Query: 917 KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976 + + ++ R G + HP+ + L Sbjct: 984 DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027 Query: 977 KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G+ + I +A +V +Q+ T G + ++ + P Sbjct: 1028 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1082 >gi|88856604|ref|ZP_01131261.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] gi|88814258|gb|EAR24123.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1] Length = 1148 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 287/1079 (26%), Positives = 463/1079 (42%), Gaps = 110/1079 (10%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HSS+S L+GA + ++ A A+A+TD + L+ + ++ A G+ + Sbjct: 68 YAELHAHSSFSFLDGASMPEKMAEEAARLGLSALALTDHDGLYGIVRMAEAAAELGLPTL 127 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P +++L EGY RL ++R L K Sbjct: 128 FGAELSLGL-----TGPQAGNADPEGDHLLVLARKEEGYHRLALAITRAQLRGGEKGRPH 182 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---------VAEKRLLTFKKLFG-D 180 L+ L E+ +LTG G + RA + A L +LFG + Sbjct: 183 YELNELAELAGGHWFVLTGCRKGRVRRALNGSLPNSAPTSETMLAAGHELDRLSELFGSE 242 Query: 181 RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239 + V L H D + LA L +VAT+N+ + + + H + AV Sbjct: 243 AVIVELFDHGYPLDSAYNDALYSLAEERGLRVVATSNAHYATPRQHHLHSAISAVRARRS 302 Query: 240 VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298 + + D +L++ +EM + F+ P A+ TVEIA +F L+ P LP Sbjct: 303 LDEMDGWLPAAGTAHLRSGAEMATRFARYPGAVATTVEIAHEAAFELRQAKPALPDQDVP 362 Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358 E + LR AG++ ++ R R+ EL+VI F+GYFL Sbjct: 363 EG----HTPASWLRELTWAGVK-------DRSIELSEQNRARIQRELDVIEEKHFAGYFL 411 Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418 IV D + +A+ I GRGS A SV Y L IT +DPLR+ L FERF++ R PD Sbjct: 412 IVHDIVSFARGRGIL-CQGRGSAASSVVCYLLKITAVDPLRYKLPFERFISAMREEEPDI 470 Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 D+DF +RR+EVI+YV +YG E AQ+ + + A+RD+ +AL Q D K Sbjct: 471 DVDFDSERREEVIQYVFERYGRENAAQVANVIQYRPRFAVRDMAKALGYSSGQQDAWSKQ 530 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + + + D ++E++Q++ RH H+ G+V+ RP Sbjct: 531 MERWGS--------------EVSGVDHDIPDAVVELAQQVMKFPRHLGIHSGGMVLTQRP 576 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597 + ++VP+ + V Q++ GL+KFD LGL L+ +Q S D G + D Sbjct: 577 VGEVVPIEHARKEKRTVVQWDKDDCAWMGLVKFDLLGLGILSAMQYSFDLVDEALGERWD 636 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656 L+ IP ++ Y L +G+FQ+ES L +QP ++ ++L RPGPI Sbjct: 637 LATIPAEEQGVYDQLCRADAVGVFQVESRAQMGLLPRLQPREFYHLVVEIALVRPGPIQG 696 Query: 657 -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + Y RK G + I +HP + L+ T GV I+QEQ+MQIA + G S +AD+LRR Sbjct: 697 GAVHPYVRRKMGADPITYLHPNLVEPLERTLGVPIFQEQLMQIAVAVGGCSADDADLLRR 756 Query: 716 AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 AM K+ E +DK + + +G + NGI A I+E + FA +GF +SHA ++ ++ Y Sbjct: 757 AMGSKRGIERIDKLRSKLYAGMASNGIVGADADRIYESIQAFAGFGFAESHALSFGLLVY 816 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM----------------- 817 +AW++ HYP FLAA + + + DAR+ +Q+ Sbjct: 817 ASAWIRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVQVRGPDIQRSGVFAVLEQLV 876 Query: 818 ------------------PPSVNTPCVDFKVGDNR------IYYSLAAIKGVGTTTARHI 853 P F D+R + L +KG+G A I Sbjct: 877 DGATAPTGDARCLDHEQPPIGPFDRTAHFDTDDHRRDGAFSVRLGLDEVKGIGAAVAEKI 936 Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI-QKYA 912 + F S+ D RV L + LE+L AGA + G +R + L + N Sbjct: 937 VAERESGEFASMNDVVRRV---GLTTKQLEALAAAGAFEVLGLTRREALWNAGNASHDRE 993 Query: 913 QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972 +++ + +F+ + + G HP+ + Sbjct: 994 EYLPNSMVVVQPPLFSLA----------------TEFDQLMADLWATGISPQSHPVAHVR 1037 Query: 973 PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 L + G+ + G I + +V +Q+ T G I ++ + Sbjct: 1038 EALTQRGVLAAADLTVAESGRRIEIGGVVTHRQRPATASG--ITFMNIEDETGLINVIC 1094 >gi|194467803|ref|ZP_03073789.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] gi|194452656|gb|EDX41554.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23] Length = 1115 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 341/1031 (33%), Positives = 536/1031 (51%), Gaps = 53/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+P Sbjct: 2 DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L + + + T +V L GYQ L++L + K V Sbjct: 62 ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--V 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ + + E I++ + L D + + + + Sbjct: 110 PLTVTQISPLLDELFIII--PPQSTVFSVLA--QPTSILTELANLGD--DDSVLLGV--N 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246 D + + QL+ LPLV T+ +L+ D A VL A+ + + Sbjct: 162 SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R Y K + L A + TVE+A C+ LQ AP+LP F + Sbjct: 222 RGQHYLYSKEQVVQDYKAKGLSAAAQKTVEVATLCNVELQFRAPVLPHFKNQAG----IS 277 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + + Sbjct: 278 SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D +R Sbjct: 334 AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 394 RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 454 LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEVVPLQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D L +TQF +E GL+K DFLGLK L+++ +L + Q DL I F+D Sbjct: 513 -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPNFDLQKINFNDS 571 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 572 LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M+ Sbjct: 632 GKEKIAYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K HYP Sbjct: 692 DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M E N+EK+K+ DA+QF ++I P +N F + D +Y+ +AIKGV Sbjct: 752 FFTALMNAE-TNIEKLKRHVGDAKQFGVKISGPRINISESSFLLHDGTVYFGFSAIKGVR 810 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+E + F L +F +R+ + + ++E L+++GA D GY+R +++ +L Sbjct: 811 RDFVAAILEERQENGKFTDLRNFITRIPERWQKQELIEPLIYSGAFDNMGYNRAEMIDAL 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963 + + +FA + +++ + R E LG Y Sbjct: 871 PKLISGIE------------LFAGFANFDDPTLQTAIDQRNEFPLLTRLTKENEYLGVYL 918 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022 SGHP+ Y + +++ + + + + + T++ R + +V ++ Sbjct: 919 SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 976 ETGAVDITVFP 986 >gi|114320331|ref|YP_742014.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|122311913|sp|Q0A9G3|DNAE2_ALHEH RecName: Full=Error-prone DNA polymerase gi|114226725|gb|ABI56524.1| error-prone DNA polymerase, DnaE-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 1025 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 268/1033 (25%), Positives = 442/1033 (42%), Gaps = 76/1033 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + L S +S L GA ++ + A A+A+TD ++ A+ Q A + Sbjct: 4 DYAELHCLSCFSFLRGASQPAELVQRAAELGYRALALTDACSVAGAVRAHQAAKETDLHL 63 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G ++ I P +VLL + L L+S K Sbjct: 64 IHGSEIRIH----------------QGPLLVLLAPCRRAWAELCALISLGRSQ-ARKGDY 106 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 R+ L+ L + + + + ++ F + FGDR +V + Sbjct: 107 RLEREQLEGT-------LPHCLALWVP-----DDAPHDAEQGRWFARHFGDRGHVAVALH 154 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 H D R +++ LA LP VA L D L A+ H + + Sbjct: 155 HGPDDEARLQRLLALADRFRLPAVAAGGVLMHRRGRRALQDTLSALRHRRTL-AAMGTAL 213 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 RS P L +V +A +C F L P + + Sbjct: 214 ECSGERHLRSLHSLARLYPPALLRRSVHLADQCRFSLDKLRYEYPAELVPAGE----TPA 269 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + G QG ++D EL +IA M + +FL V D + +A+ Sbjct: 270 SYLRRLTLEGARRHWPQGM------PDKVAHQVDHELALIAEMGYEPFFLTVHDVVAFAR 323 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GRGS A S + L IT +DP R SLLFERF++ +R PD D+DF +RR+ Sbjct: 324 RRGIL-CQGRGSSANSAVCFCLGITAVDPARQSLLFERFISKERGEPPDIDVDFEHERRE 382 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KYG R A T + ++ALRD GRAL + + +DRL I V Sbjct: 383 EVIQYIYRKYGRHRAALAATVIRYRPRSALRDAGRALGLDAATIDRLAGSIQWWDGKRVD 442 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + R DP + R + I+ +L GL RH S H G VI + P+S+LVP Sbjct: 443 PERL----REAGLNPDDPRLARTVAIAGQLLGLPRHLSQHVGGFVISEGPISELVPTENA 498 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607 + + Q++ +E GL+K D L L L+ ++++ D LA RG ++ L+ +P +D Sbjct: 499 AMAGRTIIQWDKDDLEALGLLKVDVLALGMLSCIRRAFDLLAGFRGRRLTLADVPAEDPA 558 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 Y +++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R+ Sbjct: 559 VYRMISDADTMGVFQIESRAQMAMLPRLRPQTFYDLVIEVAIVRPGPIQGDMVHPYLRRR 618 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEE 724 G E + + +L T GV I+QEQVMQ+A + +G++ EAD LRRAM K Sbjct: 619 EGLEPVDYPSEAVRGVLARTLGVPIFQEQVMQLAVVAAGFTPGEADALRRAMAAWKRKGG 678 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +++ + G +NG + A +F + F +YGF +SHAA++A++ Y +AW+K H P Sbjct: 679 LGPFRDKLLKGMRRNGYCEDYAERLFRQIQGFGEYGFPESHAASFALLVYVSAWLKCHEP 738 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839 F A + + + +DA + ++I P V D + + L Sbjct: 739 ALFTCALLNSQPMGFYAPAQLLRDAERHGVEIRPVDVRHSDWDCSPEHRGDGEPALRLGL 798 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++G+ A ++ A +PF +++ R L+RR LE+L AGAL R Sbjct: 799 RLVRGLNRRAADRLIAARGRRPFRDVQEMARRA---ALHRRDLETLAHAGALRGLAGHRR 855 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + +F + + L Sbjct: 856 AAWWQVLGA------------EAGLPVFEDLH----IEEAAPALDAPAEGEDLVADYTSL 899 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 GF HPL + +P LR+ + + +T G +R A +V+++Q+ + G + ++T Sbjct: 900 GFTLGRHPLALLRPQLRRRRLLTAADLASTGHGRLVRTAGLVINRQRPGSAGG--VTFLT 957 Query: 1020 FSEPAKEYEANFF 1032 + + + Sbjct: 958 LEDETGQINLVVW 970 >gi|270291308|ref|ZP_06197530.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4] gi|270280154|gb|EFA25990.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4] Length = 1112 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 301/1027 (29%), Positives = 520/1027 (50%), Gaps = 41/1027 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FV L V SSYSLL + ++ A+A+TD N ++ A+EF Q ++P Sbjct: 3 AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + +D ++VLL GY L+ + S K Sbjct: 63 IVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTEISAK--P 110 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188 + + L+ + L+++ ++ + A+ + +++ + L++ + Sbjct: 111 TLTFNDLRAYWKD-LVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI-- 167 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247 + + Q+A + + + +L+EED+ A VL + + + + Sbjct: 168 NGQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAK 227 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +++LK +E V + L +A T L++ I+ + + Q++ Sbjct: 228 GGGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIP--IVSPRLPQFATPNQQDS 285 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 L L A + Y+ RLD EL VI M F+ YFLI+ D +Q+A Sbjct: 286 FTYLTQLCQQALTQLKENVPDA-----ERYQARLDHELAVIKEMGFADYFLIIHDVVQFA 340 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R MPD D+D D+R Sbjct: 341 HQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQR 400 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + V++YV ++YGH+ V QIITFG+L AK A+RDV R ++++++ LIPN + Sbjct: 401 EVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITL 460 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 A R R+ + P + E + +LEGL RH STHAAGIV+ L + VP+ Sbjct: 461 KQAA-QTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ- 518 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607 D + ++Q++ ++E+ GL+K DFLGL+ L+L+ L+ + + + ++ I +D + Sbjct: 519 DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDPQ 578 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 T L T G+FQ ES+G+R L + P ++A+ +LYRPGP++NI + RK+ Sbjct: 579 TLQLFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDH 638 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 E + +++ +L ET G+++YQEQVM++A + G SL +AD+LRRAM KK +++ Sbjct: 639 LEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQ 698 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + FI GA + G S+ IA ++ + FA+YGFNKSHA AY+ +++Q A++K HYP +F Sbjct: 699 MRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDF 758 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 A + + N K K + Q+ ++ I + P +N + + +I AIKG+ Sbjct: 759 YTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRR 818 Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 +H++ F +++D+ R+ ++ ++ V++ L+FAGALD FGY+R +L + L Sbjct: 819 DFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLP 878 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966 + K + +N ++F T + L + + E+ +LG Y S H Sbjct: 879 ELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTYVSAH 927 Query: 967 PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026 P++ + ++++ ++ A G + + S + +T+KG + + S+ E Sbjct: 928 PVERFAELIKQRRFVQIQQFKA---GEKVTSIVYIRSIRSIRTKKGEPMAFAKISDQTDE 984 Query: 1027 YEANFFP 1033 EA FP Sbjct: 985 CEAVIFP 991 >gi|308234386|ref|ZP_07665123.1| DNA polymerase III, alpha subunit [Atopobium vaginae DSM 15829] gi|328944202|ref|ZP_08241666.1| DNA polymerase III [Atopobium vaginae DSM 15829] gi|327491121|gb|EGF22896.1| DNA polymerase III [Atopobium vaginae DSM 15829] Length = 1302 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 316/1052 (30%), Positives = 510/1052 (48%), Gaps = 96/1052 (9%) Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+PI GC+ ++ ++ K + LLV A GY L++++S Sbjct: 125 IKPIFGCEANLIPDQCIEKGTPQKR-----YHLTLLVKNAVGYVNLMKMMSLA-ANQMMY 178 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R + L++ EGLI L+G + G I + A FK LFGD Y+ + Sbjct: 179 YKPRTTFAMLEKYH-EGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEI 237 Query: 187 QRHR--------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238 Q H ++ ++VQL + +VATN++ + ++D E D+L + +T Sbjct: 238 QDHGVSLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANT 297 Query: 239 VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 + + + + Y K+ +M ++F+ +PEA++ +V IA +CSF L LP+F Sbjct: 298 HLDENYQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFP- 356 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 + E R++ GL + + + + ++R ++E VI F+ YF Sbjct: 357 --GLREGETSEERFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVICFKGFADYF 414 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV ++++WAK++ I VGPGRGS AG++ AYA+ IT DPL L+FERFL+ +R MPD Sbjct: 415 LIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPD 474 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+DF +RR EV+++V+ YG +RV +IT+ +++AK A+ D R L P + +L K Sbjct: 475 IDMDFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSK 534 Query: 478 LIPNDPAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 ++ +DP + + + F +A + R+++ ++ +EG+ R HA Sbjct: 535 MVSSDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHAC 594 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 I+I P++ VP D + + +TQ+ + GL+K DFLGL+TLT++ K+LD + Sbjct: 595 AILIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIR 654 Query: 591 -----------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627 + +D IPF D + L+ + T G+FQ+ES G Sbjct: 655 ASYPDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEG 714 Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685 M ++ M+P I+AL++LYRPGP+ +V Y NR NG+E +V + +L ET Sbjct: 715 MTATIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDDRLSDILDET 774 Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADV-------------LRRAMGKKIKEEMDKQKERF 732 G I+YQEQVMQI+ +SG+S E+D L + + + + Sbjct: 775 YGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYDHW 834 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 ++GAS NG K +A I++ + +FA Y FNKSH+A YA++ QTAW+K ++P E++A+ + Sbjct: 835 MNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMASVL 894 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852 T M KI + I+I+PP +N DF I + A I+GVG Sbjct: 895 TSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQGIRFGFAGIRGVGENVGIA 954 Query: 853 IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN---- 907 IM+ + PF +L DF RV+S + NRRV+E+L+ AGA D GY R QL+ +D Sbjct: 955 IMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKNNPK 1014 Query: 908 -IQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 I A EK+R+ ++F G + E+ VLG Sbjct: 1015 NIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREVLGI 1074 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVA-----------------TIRGNNIRLAAMVVS- 1003 Y + HPL Y+ LR+ E G I LA M + Sbjct: 1075 YVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVPEGKTIHLAGM-TAT 1133 Query: 1004 --KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 Q++ T+ G ++ VT + + FP Sbjct: 1134 GLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFP 1165 Score = 85.6 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +FVHL HS +S+L+ + S+ N++D A A+A+TD +F +F Sbjct: 2 AFVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDFDLACRKYN 58 >gi|256394376|ref|YP_003115940.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928] gi|256360602|gb|ACU74099.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM 44928] Length = 1127 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 284/1073 (26%), Positives = 464/1073 (43%), Gaps = 100/1073 (9%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L HS +S L+GA S ++ + A +A+TD + A+++ Q A A + Sbjct: 52 PPYAELHAHSHFSFLDGASSPAELVAEAARLGLHGLAVTDHDGFAGAMQYKQAAEDAELA 111 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 + G +L +++ + P +++L AEGY+RL + + L Q K Sbjct: 112 TVFGAELSLEL-----TAARTGVTDPAGSHLLVLARRAEGYRRLSAAIGKAQLAGQEKGK 166 Query: 129 VRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFGDR- 181 L L E +G +LTG G + +A + + A+ L LFGDR Sbjct: 167 PVYVLDDLAEAAADGDWTILTGCRKGTVRQALERHGLTEAGFEAADAELRKLMDLFGDRN 226 Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 + + L H D R + +LA H LP VAT N + DY H + A+ + Sbjct: 227 VLIELTDHDQPLDDARNRLLARLAARHGLPTVATGNVHYARPADYRLHTAMAALRARRTL 286 Query: 241 SQKDRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 ++ D + A+ + E+A +F + P LP + Sbjct: 287 AEMDGWLPGAPTAYLRSGAEMLARFPVHEFGRAVVRSAELAADHAFDFKTINPQLPDYPV 346 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 E E + LR+ G R ++ + + Y Q + +EL+VI ++KF GYF Sbjct: 347 PEG----HTEASWLRHLTYLGAAQRYG----SESENPKAYHQ-IAYELDVIEQLKFPGYF 397 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 LIV D ++ + I GRGS A S +AL IT +D +R L+FERFL+P R PD Sbjct: 398 LIVYDIAEFCRAQGIL-AQGRGSAANSAVCFALGITSVDSVRHGLVFERFLSPVRDGPPD 456 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477 D+D RR++VI++V KYG +R A + + +A+ ALRD R L VD Sbjct: 457 IDVDIEAGRREDVIQHVYAKYGRDRAAMVCNVITYRARLALRDSARVLGYSPGTVDAWAG 516 Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 I P + I + ++LE++ +L+ RH H G+VI DR Sbjct: 517 TIGPHEGVPDGSEEIPE---------------QVLELAGRLQRRPRHLGIHNGGMVIVDR 561 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594 PL+Q+VP+ R V Q++ AGL+KFD LGL L + +LD +A+ Sbjct: 562 PLAQVVPIEWARREGRTVLQWDKDDCAAAGLVKFDLLGLGMLGAIHDALDLIAEHHGTRL 621 Query: 595 --KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + Y ++ T+G+FQ+ES L ++P C D++ V+L RP Sbjct: 622 GLHDLPQDGDPEADAVYAMIQDADTVGVFQIESRAQMVTLPRLKPKCFYDLVVEVALIRP 681 Query: 653 GPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GPI + Y R+NG E++ HP ++P+L+ T GV+++QEQ MQ+A +G+S +EA Sbjct: 682 GPIQGGAVHPYLRRRNGDEEVTYPHPTLEPVLERTLGVVLFQEQAMQMAIAAAGFSAAEA 741 Query: 711 DVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769 D LR+AM K+ E M + KER ++G ++ GI+ +I+ L F+ YGF +SH+ + Sbjct: 742 DRLRQAMGSKRSPERMAELKERLMAGMAERGITPETGEDIYAKLHAFSGYGFPESHSVSM 801 Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829 A I + + ++K +YP F AA + + D R+ +Q+ VN Sbjct: 802 AYIVWCSCYLKRYYPAAFTAALLNNQPMGFYSPGSLVTDVRRHGVQVKRVDVNASGAKAT 861 Query: 830 ------------------------------VGDNRIYYSLAAIKGVGTTTARHIMEAS-A 858 + + L++++ +G A ++ A Sbjct: 862 LQSPDKPYGSGSGSGSGSGSDRTRHRHASPIAQPAVRLGLSSVRDLGDDAAEQVVAERTA 921 Query: 859 DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918 PF +EDF R L+R LE+L AGA CFG R + L + + Sbjct: 922 GGPFTGVEDFIVRT---GLSRSTLEALATAGAFGCFGLDRREALWTAGAL--------AG 970 Query: 919 RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978 T H + T+ + + G HP+ + L Sbjct: 971 TTAGHLP-------GTAPGTTVPQLDPLTPVEVTLADLWATGTSPEDHPIGHLRWRLAMR 1023 Query: 979 GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 G+ E + +R+A +V +Q+ T G+ +++ + Sbjct: 1024 GVTPAVELRTARNRSLVRVAGLVTHRQRPPTAHGT--CFLSMEDETGLINVIC 1074 >gi|237810714|ref|YP_002895165.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346] gi|237505761|gb|ACQ98079.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346] Length = 1076 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 278/1053 (26%), Positives = 442/1053 (41%), Gaps = 67/1053 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA S ++++ A IAITD +L A A A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++G + D + G P P +VLL EGY L EL+S ++ K + Sbjct: 69 LVVGAYFGVTPDDAAPGHDPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 127 Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L L + + + + V + +L F LFG+R + L Sbjct: 128 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 185 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q R D QV + +VA + D + A+ + Sbjct: 186 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 244 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + P+ R+ +AL T + C F L P I Sbjct: 245 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 300 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L + AG R G RQR++FEL +IA +K+ YFL V D ++ Sbjct: 301 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 354 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A SV Y L +T+I+P + +LLFERFL+ +R PD D+DF Sbjct: 355 YARSKDIL-CQGRGSAANSVVCYCLGVTEINPQQSTLLFERFLSRERGEPPDIDVDFEHQ 413 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+Y+ KYGH+R A + + + ALR+ G+AL + V+R+ K Sbjct: 414 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 473 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 L A P + EI+ +L RH S H+ G V+ L++LVP+ Sbjct: 474 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 529 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598 V Q++ +E GL+K D L L L+ L ++ D + L Sbjct: 530 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 589 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ RPGPI Sbjct: 590 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 649 Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 V+ + + +I ++ +L+ T G+ I+QEQVMQIA + +G++ EAD Sbjct: 650 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 709 Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 LRRAM K ++ K ER ++G + G S+ A IFE + F +YGF +SHAA++A Sbjct: 710 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 769 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++Y ++W+K H P FLAA + + + QDA++ + ++P + + Sbjct: 770 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 829 Query: 831 G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 + L+ ++G+G AR I A A PF S+++ R L RR Sbjct: 830 EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAACAAGPFASVDELARRA---CLERR 886 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L A A +R L + + A + + Sbjct: 887 DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 931 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + R +G + HP+ + +P L + G R + Sbjct: 932 PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 991 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V ++Q T KG + +VT + P Sbjct: 992 VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1022 >gi|227544900|ref|ZP_03974949.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300910073|ref|ZP_07127533.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri SD2112] gi|227185112|gb|EEI65183.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300892721|gb|EFK86081.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri SD2112] Length = 1115 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 338/1031 (32%), Positives = 534/1031 (51%), Gaps = 53/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+P Sbjct: 2 DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L + + + T +V L GYQ L++L + K + Sbjct: 62 ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ + + E I++ + L D + + + + Sbjct: 110 PLTIAQISSLLGELFIII--PPQSTVFSILA--QPTSILTELANLGD--DDSVLLGV--N 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246 D + + QL+ LPLV T+ +L+ D A VL A+ + + R Sbjct: 162 SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + K + L A + TVE+A C+ LQ AP+LP F + Q Sbjct: 222 RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + + Sbjct: 280 --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D +R Sbjct: 334 AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 394 RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 454 LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D L +TQF +E GL+K DFLGLK L+++ L + Q DL I F+D Sbjct: 513 -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 572 LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M+ Sbjct: 632 GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K +YP Sbjct: 692 DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M E N+EK+K+ DA+QF +++ P +N F + D +Y+ +AIKGV Sbjct: 752 FFTALMNAE-TNIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+E + F L +F +R+ + + ++E L+++GA D Y+R +++ +L Sbjct: 811 RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963 + + +FA + +++ + R E LG Y Sbjct: 871 PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022 SGHP+ Y + +++ + + + + T++ R + +V ++ Sbjct: 919 SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 976 ETGAIDITVFP 986 >gi|146345343|gb|ABQ23683.1| DNA polymerase III alpha subunit [Lactobacillus reuteri] Length = 1111 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 338/1031 (32%), Positives = 534/1031 (51%), Gaps = 53/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 F L V SSYSLL+ +++++ A+A+TD N L+ A+EF A AGI+P Sbjct: 2 DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L + + + T +V L GYQ L++L + K + Sbjct: 62 ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + ++ + + E I++ + L D + + + + Sbjct: 110 PLTIAQISSLLGELFIII--PPQSTVFSILA--QPTSILTELANLGD--DDSVLLGV--N 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246 D + + QL+ LPLV T+ +L+ D A VL A+ + + R Sbjct: 162 SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + K + L A + TVE+A C+ LQ AP+LP F + Q Sbjct: 222 RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR+ + GL+ R +A G Q Y++RL EL VI M F YFLIV D + + Sbjct: 280 --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A + I PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R MPD D+D +R Sbjct: 334 AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 RDEV++YV KYGH+RVAQIITFG+L AK +RDV R +P + RL +P+ Sbjct: 394 RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + + + + +P L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ Sbjct: 454 LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 D L +TQF +E GL+K DFLGLK L+++ L + Q DL I F+D Sbjct: 513 -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 T L T GIFQ ESSG+R L + P EDI+A+ +LYRPGP++NI + RK Sbjct: 572 LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631 Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726 GKEKI P ++ +L T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K M+ Sbjct: 632 GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 + +FI+GA+++G S +A +FE + +FA+YGFN+SHA AY++++++ A++K +YP Sbjct: 692 DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846 F A M E N+EK+K+ DA+QF +++ P +N F + D +Y+ +AIKGV Sbjct: 752 FFTALMNAE-TNIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810 Query: 847 TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905 I+E + F L +F +R+ + + ++E L+++GA D Y+R +++ +L Sbjct: 811 RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870 Query: 906 DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963 + + +FA + +++ + R E LG Y Sbjct: 871 PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022 SGHP+ Y + +++ + + + + T++ R + +V ++ Sbjct: 919 SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975 Query: 1023 PAKEYEANFFP 1033 + FP Sbjct: 976 ETGAIDITVFP 986 >gi|167621850|ref|YP_001676635.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31] gi|167351591|gb|ABZ74321.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31] Length = 1053 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 269/1035 (25%), Positives = 454/1035 (43%), Gaps = 73/1035 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQ S +SLL GA S + D+ A+AI D N++ + A A G++ I Sbjct: 12 YVELQCASHFSLLRGASSPGELFDEAQRLGYRALAICDRNSVAGVVRAHIAAKATGVRLI 71 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IGC+L + +V+L + Y RL L+S GK Sbjct: 72 IGCELVLRCGLT----------------LVVLPTDRAAYGRLCRLLSLGKSR-AGKGQCD 114 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189 + L L +GLI + + + +L +FG ++ L R Sbjct: 115 LGLEDLAA-HAQGLIAILVPDAPD----------DLCALQLKKVAAIFGVDAHLALTLRR 163 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 R D R Q+ +A + V TN LF + DV+ + T + R Sbjct: 164 RPGDALRLHQLEAMARQAGVRPVVTNRVLFHEKGRRLLQDVVTCIREGTTIDDVGFKRDR 223 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D YLK SE+ + + P+A+ +VEIARRC F L + P E + + + Sbjct: 224 HADRYLKAPSEIQRLLAKHPDAVTASVEIARRCRFSLDELSYQYPH----EVSEPGRTPQ 279 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L G R G A + + L EL +I + ++ YFL V +Q+A+ Sbjct: 280 ETLERLTWFGAAQRYPDGLPA------EVEKALAHELRLIGLLGYAPYFLTVNSIVQYAR 333 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 +I GRGS A S Y L +T IDP R LLFERF++ +R PD D+DF +RR+ Sbjct: 334 GQDIL-CQGRGSAANSAVCYVLGVTSIDPERNDLLFERFVSQERNEPPDIDVDFEHERRE 392 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 V++++ YG R A + + + A+RDVG+ L +P L I + + Sbjct: 393 TVMQWIFETYGRHRCALVAVVQRFRPRGAVRDVGKVLGLPEDMTKALSSQIWSFSREDIE 452 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +R L+D + LE++Q L RH S H G V+ + L +LVP+ Sbjct: 453 ----ESHARDVGLDLSDRRLRLTLELAQLLLNTPRHFSQHPGGFVLTEDRLDELVPIEPA 508 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607 D + +++ I++ +K D L L LT L++ LD A + + DL+ IP +D Sbjct: 509 RMQDRQIIEWDKDDIDELKFMKVDVLALGMLTCLKRGLDLLAAHKDIHKDLATIPPEDPR 568 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY ++ TLG+FQ+ES L ++P D++ V++ RPGPI +V+ R+ Sbjct: 569 TYAMIRKADTLGVFQIESRAQMVMLPRLKPRSFYDLVIEVAIVRPGPIQGDMVHPYLRRR 628 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724 GKEK+ P ++ +L +T GV ++QEQ M++A +G++ EAD LRR+M Sbjct: 629 EGKEKVSYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRSMATFKMTGG 688 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 + +++ + G G + A F L F YGF +SHAA++A+++Y ++W+K H+P Sbjct: 689 VSHFRQKLLGGMVARGYPQDFAEQTFSQLEGFGSYGFPESHAASFALLAYASSWLKCHHP 748 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYYS 838 F AA + + + + +DA + +QI P VN D + + + Sbjct: 749 DVFCAALLNSQPMGFYQPAQIVRDAVEHGVQIRPICVNASRWDCTLEPDGDTGRLAVRLG 808 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYS 897 + +KG+ A ++ A ++P+ S+++ R +K VL L A A G + Sbjct: 809 MRLVKGLADGDAAALVLARGEEPYRSIDEVWRRSGAKP---GVLGRLAEADAFLPSLGLA 865 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R + ++ ++ A +F + ++ + + Sbjct: 866 RREAAWAIKALRDDA-----------LPLFDQPGASELNEPAV-ALKAMTEGREIVEDYS 913 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 +G HPL + + L ++ + G I+ A +V+ +Q + KG + + Sbjct: 914 HVGLSLRRHPLALLRSDLTRLRRAPCRDVAQGRDGRFIQTAGLVLVRQMPGSAKG--VLF 971 Query: 1018 VTFSEPAKEYEANFF 1032 +T + + Sbjct: 972 MTLEDETGVANLVVW 986 >gi|159039006|ref|YP_001538259.1| error-prone DNA polymerase [Salinispora arenicola CNS-205] gi|157917841|gb|ABV99268.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205] Length = 1124 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 283/1052 (26%), Positives = 461/1052 (43%), Gaps = 81/1052 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L H+++S L+GA + ++ A+A+TD + + + F++ A A + I Sbjct: 74 YAELHTHTNFSFLDGASHPEELAEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 133 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D+ P P ++LL EGY RL +SR L K Sbjct: 134 FGAELSLDLPG-----PPNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPV 188 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L+ + + +++LTG G + A A + L LFG + + V L Sbjct: 189 YGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 248 Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H D R + +LA LP VATNN + + L AV + + D Sbjct: 249 HGHPVDADRNDALAELADAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWL 308 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +L++ +EM + F+ P A+ E +F LQ+ AP LP + Sbjct: 309 PAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVPSG----HT 364 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + LR+ G R H + Y +L+ ELN+I + F GYFL+V D + + Sbjct: 365 EMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVYDIVTF 419 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++ +I GRGS A S YAL IT++D +R LLFERFL P+R PD D+D R Sbjct: 420 CREQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESHR 478 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI++V +YG E AQ+ S + ++A+RDV +A Q D K + + Sbjct: 479 REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQVDRWGSV- 537 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 A+ + ++ + ++ RH H+ G+VI DRP+ ++ P+ Sbjct: 538 -------------AEVDAEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVE 584 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606 V Q++ GL+KFD LGL L L D + R ++L + DD Sbjct: 585 WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGTR---LELGDMTLDDS 641 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 E Y +L +G+FQ+ES L ++P C D++ V+L RPGPI ++ Y R Sbjct: 642 EVYDMLCRADAVGVFQVESRAQMATLPRLRPRCFYDLVVEVALIRPGPIQGGSVHPYIRR 701 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 KNG+E + HPL+ L++T GV ++QEQ+MQ+A L+G+ +EAD LRRAM K+ E Sbjct: 702 KNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSVE 761 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 M + +R +G ++ GI+ +A +++ L FA YGF +SHA ++A + Y ++W+K ++ Sbjct: 762 RMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 821 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822 P FLAA + + + DAR+ +++ P VN Sbjct: 822 PAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPNTRWGSQPG 881 Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881 P + +G + L ++ +G A I+ A + + D R L Sbjct: 882 EPPHAWGLGGPAVRLGLDGVRALGAEVAERIVAERTAHGLYQDMSDLARRA---GLTAAQ 938 Query: 882 LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941 LE+L A A CFG +R Q ++ + + GT + Sbjct: 939 LEALATADAFACFGVTRRQ----------ALWAAGAAAQDRPDRLPGTVPGTVA-----P 983 Query: 942 KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + R + G HP + L +G ++ G IR+ +V Sbjct: 984 TLPGMAAVDRLVADVWATGLSPESHPARFIRDQLDALGAVPIDQLARVEPGRRIRVGGIV 1043 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G + ++ + P Sbjct: 1044 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1073 >gi|220925004|ref|YP_002500306.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060] gi|219949611|gb|ACL60003.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 1072 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 265/1041 (25%), Positives = 442/1041 (42%), Gaps = 75/1041 (7%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQV + YS L GA S + A A+ +TD +++ ++ + A A G + + Sbjct: 3 VELQVTTHYSFLRGASSPEELFTTAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+LD+ + ++++ + Y RL L++ GK + Sbjct: 63 GCRLDL-------------SGPDQGTALLVYPTDRAAYGRLCRLLTLGK-ERAGKGGCTL 108 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHR 190 + E +EGLI + S RL K +FG + L R Sbjct: 109 DFGDVAEW-SEGLIAV----------LLTDKSDDALAARLGRLKGIFGRHSFCALTRRFG 157 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249 D R + LA +P+VAT + L+ E DV+ + T + R Sbjct: 158 VNDHRRLEGIADLARAARVPIVATGDVLYHVPERRLMQDVVTCIRLGTTIEAAGFARERH 217 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 +L+ +E +F+ PEA+E IA C F L P ++ + + Sbjct: 218 AGRHLQPPAETARLFARHPEAVERAQAIAESCRFSLDDLTYTYPDETGEDG----RSAQE 273 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L +AG R G ++ R+++ EL++IA ++ YFL V +++A+ Sbjct: 274 RLEAMTLAGAAQRFPGG------IPENVREQIRHELDLIASKTYAPYFLTVEAIVRFARD 327 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A SV + L IT IDP+R LLFERF++ +R PD D+DF DRR+E Sbjct: 328 QGIL-CQGRGSAANSVVCFCLGITAIDPVRLKLLFERFVSDNRDEPPDIDVDFEHDRREE 386 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI++V YG R A T A+ A+R+VG+ L +P L +L+ Sbjct: 387 VIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVSGWSRDGAG- 445 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 ++ L+D + L+I++ L G RH H G V+ L +L P+ Sbjct: 446 ---EREAEALNLNLSDRRLRLTLDIAKALIGTPRHLGQHPGGFVLTLDRLDELCPITPAT 502 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVDLSLIPFDD 605 + +++ IE +K D LGL L L+++ L + D++ IP +D Sbjct: 503 MENRQTIEWDKDDIEALKFMKVDVLGLGMLGCLRRAFALLKEHRGDENPPQDIAGIPPED 562 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG+FQ+ES L MQP + D+ V+L RPGPI +V+ Sbjct: 563 AATYAMIGKADTLGVFQIESRAQMAMLPRMQPKHLYDLTIEVALVRPGPIQGDMVHPYLR 622 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ + + + +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM Sbjct: 623 RRQNRSLVHYPSEALKSVLERTLGVPLFQEQAMQVAIVAAGFTAAEADGLRRAMATFKAN 682 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 ++ +++ I+G +NG + A F L F YGF +SHAA++A+++Y ++W+K H Sbjct: 683 GKIGLYRDKLIAGMIRNGYTPDFAARTFRQLEGFGSYGFPESHAASFALLAYASSWLKCH 742 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYY 837 +P F A + + + +DAR+ + + P VN D + + Sbjct: 743 HPDVFACALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEPAQGRLMALRL 802 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L ++G+G I F S+ED R + + LE L A A G Sbjct: 803 GLRLVRGLGNAEGARIATVREADLFRSVEDLWRRA---AVPLKALEHLAAADAFRSLGLG 859 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVENSSVRF 952 R + L ++ + +FA + Sbjct: 860 RREALWAIKGL-----------APLPLPLFAAADAREAAIRPELDEPAVALAPMPEGAAV 908 Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012 + R G HP+ +P L + GI G + +A +V+ +Q+ + KG Sbjct: 909 VADYRASGLSLGRHPVAFLRPDLARDGISACAALKRLRDGARVTVAGLVLVRQKPGSAKG 968 Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033 + ++T + + +P Sbjct: 969 --VLFITIEDETEVANLVVWP 987 >gi|53803568|ref|YP_114587.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath] gi|71151827|sp|Q605W1|DNAE2_METCA RecName: Full=Error-prone DNA polymerase gi|53757329|gb|AAU91620.1| putative DNA polymerase III, alpha subunit [Methylococcus capsulatus str. Bath] Length = 1047 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 270/1051 (25%), Positives = 450/1051 (42%), Gaps = 94/1051 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 F L S++S L GA ++ + A A+A+TD +L + +A G + I Sbjct: 9 FAELHALSNFSFLRGASHPKELVAEAARLGYAALALTDECSLAGVVRAHAEAKTLGFKLI 68 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 IG + ++ P +VLL GY +L ++ K R Sbjct: 69 IGSEFRLEDG----------------PKLVLLAMDRRGYGQLAAFITLGR-RAAEKGEYR 111 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ + I + P ++ +LF R ++ ++ Sbjct: 112 LLRGQLETHPLDQCIAIWLPEDAP------------DDETGAWLARLFPARCWIGVELFL 159 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 G D R S + L LPLVA N+ + E D L A+ +++ Sbjct: 160 SGGDGLRLSVLQALGERLGLPLVACNDVHMHARERQPLQDTLTAIRLGRPLAELGYALFP 219 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 E ++ LE ++ IA RC F L P + + Sbjct: 220 NGERHLRPIEFLARI-YPRALLEESLRIAERCRFSLDELRYEYPAELVPDG----YTAIA 274 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR G+ R +GA R++++ EL +I M + +FL V D +++A+ Sbjct: 275 WLRELTRQGMAERWPEGA------PDKVRRQVEHELELIGAMAYEPFFLTVHDVVRFARS 328 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GRGS A S Y L IT++DP R LLFERF++ +R PD D+DF +RR+E Sbjct: 329 RGIL-CQGRGSAANSAVCYCLGITEVDPARLDLLFERFISRERNEPPDIDVDFEHERREE 387 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG R A + + + ++A+RDV RAL S++D L +++ Sbjct: 388 VIQYIYRKYGRHRAALAASLITYRVRSAVRDVARALGFSPSRIDTLARVLDRHGVAETLP 447 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + +A+ +P+V RLL + Q L G RH S H G VI LS VP+ Sbjct: 448 ERLAE----AGLASENPAVRRLLALMQMLVGFPRHLSQHVGGFVIAAEDLSHWVPVENAA 503 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608 + V Q++ +E GL+K D L L LT ++K+L ++ + RG L+ +P +D Sbjct: 504 MPERTVIQWDKDDLESLGLLKVDVLSLGMLTAIRKALAYVGEGRGRPFTLADVPPEDPAV 563 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG- 667 Y +L ++G+FQ+ES L ++P D++ +++ RPGPI +V+ Sbjct: 564 YEMLQRADSIGVFQVESRAQMSMLPRLRPQSYYDLVIQIAIVRPGPIQGDMVHPYLTRRA 623 Query: 668 -KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725 E + P ++ +LK T GV I+QEQVMQ+A + +G++ EAD LRRAM K + Sbjct: 624 GLEPVSYPSPAVEKVLKRTLGVPIFQEQVMQLAMVAAGFTPGEADRLRRAMAAWHRKGGL 683 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 + +++ + G + G + A I+ + F +YGF +SH+A++A+++Y +AW+K H+P Sbjct: 684 EPFEKKLMDGMRERGYEERFARQIYRQIRGFGEYGFPESHSASFALLAYVSAWLKCHHPA 743 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---------- 835 F A + + + QDAR+ +++ P VN D + I Sbjct: 744 AFACALLNSQPMGFYGPSQLIQDARRHGVEVRPIDVNHSDWDCTLEPTEIPNPLSLWERV 803 Query: 836 -------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882 L + G + A+ + +A PF S++D +RV L+RR L Sbjct: 804 GVRALQTGSNPALRLGLRLVNGFSSAAAQRLSDARRQGPFQSIQDLATRVP---LDRREL 860 Query: 883 ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 E+L A AL G R + ++ + FA + Sbjct: 861 EALAAADALHGLGGHRHRAFWEAAGVEAPTPLYAE-------PQFAEAE---------PL 904 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + G HPL + + L + G + E G R+A +VV Sbjct: 905 LRKPGEAEDVIADYAAAGASLRRHPLSLLRERLDRRGFRTAEALWQVRNGAIARVAGLVV 964 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T G+ +VT + + +P Sbjct: 965 CRQRPMTANGT--TFVTIEDETGQINLIVWP 993 >gi|226228139|ref|YP_002762245.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27] gi|226091330|dbj|BAH39775.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27] Length = 1113 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 278/1070 (25%), Positives = 457/1070 (42%), Gaps = 86/1070 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++SLL+GA ++ + A+ A+A+TD + + ++F A + I Sbjct: 29 YAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNAI 88 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + +M + +VLL T EGY+ + LV+R + + + Sbjct: 89 LGVELTV------RMPHLDGQRGDRRTQLVLLAETREGYRNISTLVTRARMDSE-RGRPS 141 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L+ L++ G+ LTGG G + + A + +FG L + HR Sbjct: 142 VPLAMLRQ-HAAGVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDHR 200 Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRV 248 + Q++ LA +P V TNN + +D HD L A+ H R R Sbjct: 201 LPEERVLVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLRP 260 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + LK+ + + L E + T++IA+RC+F L P +P F + + Sbjct: 261 NAEWALKDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPDGF----TAD 316 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + G R + +RQ++ EL I R + +FL V ++ A+ Sbjct: 317 TYLEEIVLTGARERWGDRF------SDVHRQQIAHELAAIRRRDCATFFLTVWRIVRHAR 370 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A S Y L +T +DP+ F LLFERFL D PD DIDF R+ Sbjct: 371 SEGIL-CQGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDRE 429 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 ++++V +G E A + + ++A RD R L Q D L AH + Sbjct: 430 RILQHVYKHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTTA 489 Query: 489 LQAIADDSRFR----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + R L DP V +L + L L RH S H G V+ D PL LVP Sbjct: 490 DLFETAEGQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLVP 549 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603 + +D V Q+ + G+ K D LGL LT++Q L +L + +D++ Sbjct: 550 IEPASMADRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTKNTHIDMAHFNM 609 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 DD + Y + T+G+FQ+ES L ++P C D++ V+L RPGP+ +V+ Sbjct: 610 DDKDVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHPY 669 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720 R+ +E + HP + P+L+ T GV I+QEQ MQ+A ++ ++ ++AD LR+ MG K+ Sbjct: 670 LRRRAKEEAVDYPHPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGHKR 729 Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K M K + + G K I + I + FA +GF +SHAA++A+I Y TA+++ Sbjct: 730 SKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAYLR 789 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831 HY E+L A + + +DA++ +++ P + D + Sbjct: 790 YHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTLMP 849 Query: 832 -DNRI--------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870 D I + I+ +G+ + + A AD PF S+ED S Sbjct: 850 NDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLGSKARKVLEAALADGPFRSIEDAVS 909 Query: 871 RVDSKKLNRRVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924 RV L+ R +L AGALD R L + + K Sbjct: 910 RV---TLDARGWRALAEAGALDSMFAHEPPERRRRVALWEVLALTKEPPLPL-------- 958 Query: 925 NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984 + + R+ G GHP+ +P+L G++ + Sbjct: 959 -------APPRRAPPPTSLAACTPVELTAADYRMTGVSLVGHPMKHARPVLEPNGVRTIQ 1011 Query: 985 ESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 + G + +A +V+ +Q+ T KG ++T + P Sbjct: 1012 DIQQHGKDGETVAIAGVVICRQRPPTAKG--FVFLTLEDETGMLNIIITP 1059 >gi|225182038|ref|ZP_03735469.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] gi|225167251|gb|EEG76071.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1] Length = 1022 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 339/1032 (32%), Positives = 539/1032 (52%), Gaps = 57/1032 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+V S YS L GA L +++ + PAIA+ D L A+ F+ A GI+P Sbjct: 2 TFVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + + P +VLLV G+Q L+ LV+R+ L Sbjct: 62 ILGAEFSL----------------PCGLPLVLLVRDRTGWQNLVRLVNRVQLA-----RP 100 Query: 130 R---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R + + W+ E GL + G R S Q + L + +FG +Y+ L Sbjct: 101 RSDTLDMGWIAEDAA-GLTAVLPAGGGETVR-----SRQSYIQALEQLQPVFGCEVYLGL 154 Query: 187 QRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 + R++++V ++A +PLVAT+N ++ D E + ++ + ++ R Sbjct: 155 EDGGLPGTKRQNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGR 214 Query: 246 -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 +YL +EM F+ A ENT+++A+RC+FIL+ LP F++ D + Sbjct: 215 SFLPGAAYYLPAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQ---QDCK 271 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + E LR + G++ R + A A RL+ EL VI S YFLIV D + Sbjct: 272 EPAEAVLRRLCLEGMQRRGLENAEAYR--------RLERELAVIIPKGLSAYFLIVHDLV 323 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+K NI VGPGRGS GS+ AY L I +DPL L FERFL+ DR PD D+D CQ Sbjct: 324 SYARKQNISVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQ 383 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+E++ Y++++YG VAQ+ F +L A+AA+R+VG+ L M ++ + + +P Sbjct: 384 RRREELLGYLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAG 443 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 A+ F A+L D +L +++LEGL RH STHA+G++IGD L + +P Sbjct: 444 RGGIEAAVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALP 503 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-SLIPF 603 + R ++ ++ +E+ G +K D LG + LT+ +L ++ +R + IP Sbjct: 504 LCRGPAGEVLTQ-WDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVAEEIPL 562 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661 DD +TY +L +LG FQLES GMR+ L + P +ED+I L+SLYRPGP ++ +V + Sbjct: 563 DDEDTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESF 622 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R++G+E + +HPL+ +L ET GV++YQEQVMQ+A L GY+ EAD LRR M +++ Sbjct: 623 IARRHGREDMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRL 682 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + + +F++GA K G+S+ A ++F L +FA Y FNK+H+AAYA++SY TA++K Sbjct: 683 PSLQEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKK 742 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYPVEF AA ++ + ++A + ++PP VN + F I +L Sbjct: 743 HYPVEFYAALLSS-GSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKEAIRSALPV 801 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 ++ +G A ++EA PF SL DFC RV L R L +L+ AGA G +R Q Sbjct: 802 VRDLGARAAEALLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQA 861 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L SLD++ K+ +R ++ ++ + + E LG Sbjct: 862 LASLDHVLKWT-----DRQPGQLSLLDLMP----EESAVPALPDFSWPEVVAAELETLGM 912 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 S HPL YK L+ + + G + +A V+ + +++ ++G + + S Sbjct: 913 ALSDHPLACYKKQLQSVSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFIS 972 Query: 1022 EPAKEYEANFFP 1033 + + EA F+P Sbjct: 973 DESGFAEAVFYP 984 >gi|310821701|ref|YP_003954059.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1] gi|309394773|gb|ADO72232.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 1007 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 277/1030 (26%), Positives = 458/1030 (44%), Gaps = 75/1030 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L S++S L GA ++ A PA+A+TD + L+ ++ A G++ I Sbjct: 2 YAELVCRSNFSFLRGASHPEELVATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +G +L + P +V+ A GY + LVS + K Sbjct: 62 LGTELTLT----------------EGPPVVVYAMDAGGYANMCRLVSASRMA-HPKGETG 104 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + + E +EGLI L + +++ + F R +V L R Sbjct: 105 LPWREVAER-SEGLIALLPHPAPI--------------EQVGGLAEAFPGRFHVGLCRTL 149 Query: 191 GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248 D RE++ LA +PL A N+ DVL A+ H T V + R Sbjct: 150 SAGDGPREARAEALARELGVPLCAHNDVHVHHRRRQPLQDVLTAIRHKTTVDKAGTRLLP 209 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + LK+ +EM +F D PEA+E T+EIA+RC L Sbjct: 210 NAERTLKSPAEMARLFRDRPEAIERTLEIAQRCHATLDDLRYHFSEEDLPPG----LTAM 265 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 LR GL VR G + R++++ E+ +I + F GYFL + D +++A+ Sbjct: 266 GHLRQLTEEGLGVRYPAGV------PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFAR 319 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A SV YAL +T IDP+R LLFERFL+ +R PD D+DF +RR+ Sbjct: 320 SRGIL-CQGRGSAANSVVCYALQLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERRE 378 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EV++YV K+G R + F + + ALR+VG++L + QVDRL K+ V+ Sbjct: 379 EVLQYVYEKHGRHRAGMVCEFICYRGRLALREVGKSLGLSLDQVDRLSKVAAA-SGFEVT 437 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 + + + D V + L +++++EG RH S H G VI PL L+P+ Sbjct: 438 PEVLVE----AGLSAFDSRVRQTLTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENA 493 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607 V Q+ G++K D L L LT + K L + + + L+ IP +D + Sbjct: 494 AMKGRTVIQWEKDDTNALGVLKVDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPK 553 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667 Y +L T+G+FQ+ES L ++P D++ ++L RPGPI +V+ + Sbjct: 554 VYDMLCEADTVGVFQIESRAQMNMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRR 613 Query: 668 KEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEE 724 + P + +L++T GV ++QEQ M++A + +G++ EAD LRRA+G K+ ++ Sbjct: 614 NGEEVPTYPTPDVQAILEKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQL 673 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++ + RF+ G K G +F FA YGF +SH+A++A+I+Y ++W+K HYP Sbjct: 674 LEPYRMRFVEGGRKRGYPAAYMEELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYP 733 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843 F A + + DAR+ +++ P V D + + + L ++ Sbjct: 734 QAFTTALLNSQPMGFYAPHTLVADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVR 793 Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 G+G + + A A F L D R ++ R L L AGAL SR Q L Sbjct: 794 GLGEAAGKRVAAARAGG-FSCLGDVARRT---RIPRHELTRLALAGALASLCGSRRQALW 849 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 + + +++F + + + R + +G Sbjct: 850 EIQAL----------GPLDADDLFFGMSMDGTQ----VELPPMGVAERVTADYETVGLSL 895 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 HPL++ +P LR +G E G + + M++ +Q+ T +G + +++ + Sbjct: 896 EKHPLELLRPTLRTLGAVSAEGLQRVSSGRRVAVGGMLICRQRPPTARG--MCFLSLEDE 953 Query: 1024 AKEYEANFFP 1033 P Sbjct: 954 TGIANLVVPP 963 >gi|86360883|ref|YP_472770.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] gi|86284985|gb|ABC94043.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42] Length = 1087 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 274/1042 (26%), Positives = 458/1042 (43%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L GA S + A+ I D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAEELFATAKLMGIAALGIADRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDL----------------QGGMSIIVYPTDRTAYSRLTRLLTLGKGRGG-KANC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + L + +EGLI + A +L ++FGDR YV+L R Sbjct: 105 ILHLKDVAHY-SEGLIGILVPDMPDDGCAV----------QLRKMAEIFGDRAYVSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ LA H + V TN+ LF + DV+ + T + Sbjct: 154 RRPNDQLRLHKLSNLAAQHRVKTVVTNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F PEAL T EI RC F L+ P Q+ Sbjct: 214 RHADRYLKPPEEMARLFPRYPEALSRTAEIVERCRFSLEELVYQYPEEALIPGMTAQQSL 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ G++ R +G A + + EL++I MK++ YFL V +++A Sbjct: 274 EHY----TWEGVKTRYPEGLPAH------VEKTIRHELSLIETMKYAPYFLTVFSIVRYA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ YGH++ A T +AK A+RDVG+AL +P + L I + Sbjct: 383 EEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSSGIWSW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + R D + L ++Q+L G RH H G V+ L LVP+ Sbjct: 438 SETVGENQVRALGLNPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 +D V +++ +E ++K D L L LT + K+ + + + +L+ IP +D Sbjct: 498 AAMADRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLELATIPQEDP 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ R Sbjct: 558 ATYAMIRRADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + +++ +SG +NG + A F L F YGF +SHAA++A+I+Y + ++K H+ Sbjct: 678 GVSRFQDKLVSGMIRNGYTMEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHF 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837 P F AA + + + DAR+ +++ P +N D + + + + Sbjct: 738 PDVFCAALLNSQPMGFYAPAQIVIDARKHGVEVRPVCINRSRWDSTLEEVEGTERHSVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896 + ++G+ T A I+ A AD+PF S++D R + L L A A Sbjct: 798 GMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAFLPSLRL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVR 951 R L ++ ++ +F + + + Sbjct: 855 ERRDALWAIRALRDE-----------PLPLFTAAAEREARAIAEQQEPDVELRQMTDGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + +G HPL + L + I E++A G + +A +V+ +Q+ + K Sbjct: 904 VVEDYSHVGLTLREHPLRFLRADLTQRRIVTCAEAMAARDGKWLMVAGLVLVRQRPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGIANVVVWP 983 >gi|16119329|ref|NP_396035.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] gi|71151851|sp|Q8UKK2|DNE22_AGRT5 RecName: Full=Error-prone DNA polymerase 2 gi|15161845|gb|AAK90476.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58] Length = 1085 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 270/1042 (25%), Positives = 444/1042 (42%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ LQV + +S L GA S + + A AI + D N+L + + + A I+ Sbjct: 2 SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ S+++ + Y RL L++ K + Sbjct: 62 VVGCRLDLTDGM----------------SLLVYPTDRAAYSRLTRLITLGKSRGG-KNNC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + + G I +L + FGDR YV+L R Sbjct: 105 ILHWDDVIAYSR-----------GMIGVLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ LA ++ V TN+ LF + D++ + H+T + Sbjct: 154 RRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +FS EAL T+EI RRC F L+ P D Q Sbjct: 214 RHADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYPEEAIVPGKDAQASL 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +G QD + + EL++I MK++ YFL V +++A Sbjct: 274 EHY----VWECAPDRYPEGL------PQDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ Y ++ A T +AK A+RDVG+AL +P + L + + Sbjct: 383 EEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 SEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 D + +++ +E +K D L L LT + K+ D + + + DLS I +D Sbjct: 498 ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNIEQEDA 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + GKE + P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + K++ +SG KNG S A F L F YGF +SHAA++A+I+Y + ++K HY Sbjct: 678 GVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHY 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837 P F AA + + + DA + +++ P VN D + + + Sbjct: 738 PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896 +KG+ A I+ A + PF S++D R + L L A A Sbjct: 798 GFRQVKGLAVADAARIVAARMNNPFASVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951 R L ++ ++ +FA + I ++ Sbjct: 855 ERRDALWAIKALRDE-----------PLPLFAAAAEREATAIAEQQEPEVALRQMTDGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + G HP+ + L I E++ G + A +V+ +Q+ + K Sbjct: 904 VIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGPANIVVWP 983 >gi|307321595|ref|ZP_07600988.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306892764|gb|EFN23557.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] Length = 1087 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 273/1043 (26%), Positives = 456/1043 (43%), Gaps = 80/1043 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + L V + +S L GA S + A+ + D N+L + + + A G++ Sbjct: 2 RYAELHVTTDFSFLRGASSAEELFATAKLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104 Query: 130 RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 I + EGLI +L + + +L ++FGDR YV+L Sbjct: 105 IIHFDDVALY-AEGLIGILVPNLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246 R R D+ R ++ LA H L + TN+ LF + DV+ + T + Sbjct: 153 RRRPNDQLRLHELTNLAVKHRLKTIVTNDVLFHEHGRRQLQDVVTCIRTGTTIDDVGFER 212 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK EM +F PEAL T+EI RC F L+ P Sbjct: 213 ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALIPGM----T 268 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L++ G+ R +G A + + EL +I MK++ YFL V +++ Sbjct: 269 AQQSLQHYTWEGVRARYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +R Sbjct: 323 ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+++ YGH++ A T +AK A+RDVG+AL +P + L I + Sbjct: 382 REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKTLSSGIWSW---- 437 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 -SETVGERQVRELGLNPDDRRLTLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 +D V +++ IE +K D L L LT + K+ +++ +DL+ IP +D Sbjct: 497 PATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 557 PSTYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ ++G ++G ++ A F L F YGF +SHAA++A+I+Y + ++K H Sbjct: 677 GGVSRFKDKLVNGMIRDGYTQEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836 +P F AA + + + +DAR+ +++ P +N D + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895 + ++G+ T A I+ A AD+PF S++D R + L L A A G Sbjct: 797 LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLG 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSV 950 R L ++ ++ +F + I ++ Sbjct: 854 LERRDALWAIKALRDE-----------PLPLFTAAADREARAIAEQQEPEVKLRQMTDGH 902 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + G HPL + L K I ++ G + +A +V+ +Q+ + Sbjct: 903 NVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCARAMTAHDGQWLIVAGLVLVRQRPGSV 962 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG + ++T + +P Sbjct: 963 KG--VMFITIEDETGIANIVVWP 983 >gi|145640823|ref|ZP_01796405.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021] gi|145274337|gb|EDK14201.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21] Length = 868 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 354/880 (40%), Positives = 520/880 (59%), Gaps = 36/880 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + P FVHL+ H+ +S+++ + + ++ AA++ A+ +TD N + F + + Sbjct: 1 MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 +G++PIIG + + + + LL EGY+ + L+S+ Y Sbjct: 61 SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 I WL E +G+I+L+GG+ G + + + E + +++ F D Y+ Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R + ++LA +LPLVATN+ +FL+ ED+EAH++ +A+ + Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228 Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RP+ T Y ++ +M +F+D+P ALENT+ IA+RCS L++ + + Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283 Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 E+ L K+ GLE RLA + Y +RL EL+VI +M F GYFLI Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFSDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DFC D RD VI +V YG V+QIITFG++ AKA +RDVGR L PY VDR+ KLI Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 P DP + +A + + + A +D V L+++++KLEG+ R+A HA G+VI + Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594 + P+Y D PVT F+ +E AGL+KFDFLGL+TLT+++ +LD + R Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582 Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654 +VD++ IP DD E++ LL T +FQLES GM+ ++ +QPDC EDIIALV+L+RPGP Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642 Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 + + +V + + H + P+L+ T G+I+YQEQVMQIAQ+L+GY+L Sbjct: 643 LQSGMVDNFIDRKHGKEEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702 Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD+LRRAMGKK EEM KQ+ F GA KNG+ +++ IF+L+ KFA YGFNKSH+A Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 AYA++SYQT W+KTH+P EF+AA MT E+DN +KI + + +++ PP +N Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822 Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866 F V I Y + AIKGVG ++ A + F + Sbjct: 823 FSVSEQGEIVYGIGAIKGVGEGPIEALVTARNEGGFSKIY 862 >gi|322433250|ref|YP_004210471.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] gi|321165642|gb|ADW71344.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9] Length = 1069 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 280/1044 (26%), Positives = 482/1044 (46%), Gaps = 46/1044 (4%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + +V L S++S LEGA + ++ A+ PA+ I D + L+ A A Sbjct: 1 MTE--GYVELHGRSAFSFLEGASMPEAMAEQAASLGMPALGILDRDGLYGAPRLYMTAKK 58 Query: 65 AGIQPIIGCQLDIDMQDNLKMTN--QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G++ IG ++ N + Q T + LL + GY+ L +L++ L Sbjct: 59 LGLRSHIGAEISTAEFGNQVLPEDWQPHTIPERPVRLSLLCESQTGYRNLSQLITGYKLQ 118 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 + K ++E EGL+ LTGG GP+ A K L + + FG + Sbjct: 119 QKSKGEGIAPYRMIEER-AEGLVCLTGGDEGPLAAALARGGLDEGRKALQSLVRTFGQEN 177 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239 +YV LQRHR ++ R + LA LPL+ATN + + E D++ A+ H T+ Sbjct: 178 VYVELQRHRIREQEARNQAAITLARELHLPLLATNGPNMATAFEREVLDLMTAIRHGCTL 237 Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 + + + +EM+++F DLP A+ TVE++ R F+++ P + E Sbjct: 238 DEAGLLLQRNTNRQMIGATEMLTLFRDLPYAVAETVELSSRLQFVMKDMGYQFPLYPIPE 297 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + L + + G+ R G + ++++ EL +IA++ +GYFLI Sbjct: 298 ----DETMDTFLHKRTMEGVANRY--GCKTSVKLRKKAERQVERELALIAKLGLAGYFLI 351 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D +++ +KN + V GRGS A S Y+L IT +DP+ LLFERFL+ R PD D Sbjct: 352 VWDIVEFCRKNGMLV-QGRGSAANSAVCYSLGITAVDPVGMDLLFERFLSEVRGEWPDID 410 Query: 420 IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478 +D D R+ I+YV +YG A + + K+A + G+AL RL +L Sbjct: 411 LDLPSGDDRERAIQYVYQRYGQLGAAMCANVITYRGKSAAGETGKALGFDVETTKRLTQL 470 Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538 + + + + + + L P + + LE+S ++ L RH H+ G++I Sbjct: 471 VGSWEWKGPT-DTMEEQFQNAGFDLHHPRIAKYLELSIRMLDLPRHLGQHSGGMIIAQGQ 529 Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597 L+ +VP+ V Q++ + + GLIK D LGL + +L+ ++ + + KVD Sbjct: 530 LASVVPIEPASMVGRNVIQWDKEDVSDMGLIKVDLLGLGMMAVLKDCVELIPRYYGKKVD 589 Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655 ++ IP DD + Y L T+G+FQ+ES +L PD D++ V++ RPGPI Sbjct: 590 IAQIPHDDPKVYESLRRADTVGLFQVESRAQMASLPRNNPDKFYDLVVQVAIIRPGPIVG 649 Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + Y R+ G+++I HPL++P+L T GV ++QEQ+++IA ++ ++ EA+ LRR Sbjct: 650 KMMNPYMERRQGRQEIRYPHPLLEPVLHRTLGVPLFQEQLLRIAMTIANFTGGEAEELRR 709 Query: 716 AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 A+ ++ ++M + + +G NG+ I + ++ FA YGF +SHAA++A+I+Y Sbjct: 710 ALGSRRSADKMKALELKLRAGMDANGVGPAAQEEIVQSISSFALYGFPESHAASFALIAY 769 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834 +AW+K HY F AA + + +DA++ ++I P V + Sbjct: 770 ASAWLKFHYLGAFTAAILNNQPMGFYSAAVLVKDAQRHGLRIKPVDVLRSSWSCTLEKED 829 Query: 835 -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + ++G+ +A + A +PF S+E+ RV S L R L +L G Sbjct: 830 NGKLSLRLGFRYVRGMREGSAVELEAAREMRPFASIEELARRVPS--LTRTDLTTLAEVG 887 Query: 890 ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947 AL+ G R + L ++ + A + L Sbjct: 888 ALNSIGEGLHRREALWQVERAGRKA-----------GPLLEELDRDEDADSPLRAMEP-- 934 Query: 948 SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007 R + G HP+ +P LR M I + G R+A V+++Q+ Sbjct: 935 -HERMVADYASTGVTVGRHPMAHCRPQLRAMEIIPARDLSLLRHGVKARIAGCVIARQRP 993 Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031 T G +++ + A Sbjct: 994 GTAHG--FIFLSIEDETGISNAII 1015 >gi|326333953|ref|ZP_08200183.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] gi|325948232|gb|EGD40342.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1] Length = 1141 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 283/1074 (26%), Positives = 461/1074 (42%), Gaps = 100/1074 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66 + L HS +S L+GA S + ++ + IAITD + + A F++ A G Sbjct: 53 YAELHAHSDFSFLDGASSPSALVSEAIRKGLRGIAITDHDGFYGAPAFAEAAQKLGPTGE 112 Query: 67 ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 + + G +L + + Q P +++L EGY++L ++ L Sbjct: 113 SDRLLTVYGAELSLGL-----TKPQNGVADPEGSHLLVLARGVEGYRQLAGAITEAQLRG 167 Query: 124 QGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181 K L L + G ++LTG G + +A A + L FG D Sbjct: 168 DEKGRPTYDLDELADRARSGSWLILTGCRKGAVRQALTGTGPIAAARALRELTDRFGRDN 227 Query: 182 LYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 + V L R D Y + +A LP VATNN + + + + D L AV + Sbjct: 228 VVVELTDRGHPTDSYDNDLLAGIAREAGLPTVATNNVHYATPDRHRVADALAAVRARRTL 287 Query: 241 SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299 S+ Y+++ EM +F P A+ +VEIA C+F L+ P LP+ E Sbjct: 288 SEIAGWLPAGPVAYVRSGEEMEHLFRRYPGAVARSVEIAEECAFDLRKATPKLPKRGIPE 347 Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359 + + LR+ G R AQ A + R+R++ EL+VI R F GYF+I Sbjct: 348 GE----TAASRLRHLTEEGFAERYAQAYAADPEFVEKARERVEHELDVIERKDFPGYFVI 403 Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419 V D + +A+ +I GRGS A S YAL IT IDP+ + L FERF++ R PD D Sbjct: 404 VHDIVDYARSQDIL-CQGRGSAAASAVCYALGITAIDPVFYELPFERFISEHREEEPDID 462 Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479 +DF D+R++VI++V ++YG AQ+ + K A+RD +AL Q D K + Sbjct: 463 VDFDSDKREKVIQWVYDRYGRRNAAQVANIVGYRPKMAVRDAAKALGHSPGQQDAWSKHV 522 Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539 EA +L ++ ++ G RH H+ G+V+ + P+ Sbjct: 523 GYSRV---------------EAPDDVGIPAPVLALAAEIHGAPRHLGIHSGGMVLTEEPI 567 Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598 ++VP+ R V Q++ E GL+KFD LGL L L ++ + G L Sbjct: 568 GEVVPIERARMDKRTVIQWDKDAAEYMGLVKFDLLGLGMLAALDHMMNLAREHLGEGWTL 627 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656 + IP ++ Y +L ++G+FQ+ES L +QP C D+ ++L RPGP+ Sbjct: 628 ATIPKEEPAVYDMLCRADSIGVFQVESRAQIGTLPRLQPRCFYDLAIEIALIRPGPVQGG 687 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + Y R G+E + H L+ P+L+ T+GV ++QEQ+M++ ++L +S +AD+LRRA Sbjct: 688 AVHPYVRRATGREPVSYSHELLIPVLERTRGVPLFQEQLMEMGRVLGDFSHDDADLLRRA 747 Query: 717 M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M K+ E +D KE+ G G+++ A ++ + FA++GF +SHA ++A + Y Sbjct: 748 MGSKRGVERIDSLKEKLYRGMRDKGMTEQTAKAVYTQILSFANFGFAESHALSFAKLVYA 807 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF----------------------- 812 ++W K HYP FLA + + + QDAR+ Sbjct: 808 SSWFKLHYPAAFLAGLLRAQPMGFYSPQSLTQDARRHGVEVRRPDLIRSQAAADLEPLDD 867 Query: 813 ---------------NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857 + +P + + + G+ + L +++G+G A+ I++A Sbjct: 868 DVSPTGKDECRLDGTKTEWVPGTPDPTPEHRRDGNFAVRLGLDSVRGIGKDVAQRIVKAR 927 Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917 + PF D R L R LE+L AG LD F SR Q L A W E Sbjct: 928 TEAPFKDSLDLSRRA---GLERAQLEALATAGCLDVFTSSRRQALWQ-------AGWTET 977 Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977 + + + G HP + L Sbjct: 978 E----------DQLEGVRFTAETPALPGLDPVEETLADLWATGVTPGSHPFAHLRAGLTA 1027 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 G+ + + G I +A +V +Q+ T G + ++ + Sbjct: 1028 AGLPSIGDLPTSEPGRRITVAGLVTHRQRPGTAGG--VTFINLEDETGMLNVVC 1079 >gi|88608539|ref|YP_506064.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str. Miyayama] gi|88600708|gb|ABD46176.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str. Miyayama] Length = 1077 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 429/1017 (42%), Positives = 611/1017 (60%), Gaps = 75/1017 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +FVHL+V S YSLL I+D A PA+A+TD + + ALEF++ A A+GIQP Sbjct: 5 TFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQP 64 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG L I + ++L+ EGY +I+L + L Sbjct: 65 IIGIDLSI-------------SHNRVDSRVLLIAKNEEGYHNMIKLSGIVSLR------- 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 R+ L+ + ++GLI+L G + S AE + K++FG L+V +QR Sbjct: 105 RVALNEVF-THSKGLILLL----GEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRL 159 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ E +++QL Y H +P VATN+ LF + EAHDVL + T V+ +R + Sbjct: 160 G--NQSAEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRVHYS 217 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 P+ Y K+ EM+++F+DL EAL NTV IARRCSF+ +V +PILP+F + +E + Sbjct: 218 PESYFKSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKFECEM------DESD 271 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 ELR + GL R+ Q+Y RL++EL +I M ++GYFLIVADFI+W+K Sbjct: 272 ELRRLSYIGLHRRMGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFIRWSKA 325 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I VGPGRGSG GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R Sbjct: 326 NGIVVGPGRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHL 385 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488 VI YV+ KYG VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+S Sbjct: 386 VIEYVRKKYG--HVAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISL 443 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 +AI D + D S+ +LL+++ KLEG RH STHAAGIVI D P+ +P+Y D Sbjct: 444 QEAINLDKDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHD 503 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608 SD+PVTQ++MK++EKAGLIKFDFLGLKTLT++ ++ + + D+ IP DD T Sbjct: 504 KESDIPVTQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLKNPNFDIDSIPLDDKRT 563 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y LL+ +G+FQL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI Y RK+GK Sbjct: 564 YDLLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHGK 623 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 E + HPL++ LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q Sbjct: 624 EAVKYPHPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQ 683 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 E+F+ GA +NGI A IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF Sbjct: 684 AEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPIEFT 743 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 A++ LE+ + +K+ QDA+ + I I+PP +N + F + DN I YSLAA+K VG Sbjct: 744 TAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNAIRYSLAALKNVGEA 803 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 A I S PF ++ + +D K ++R+ +ESL+ +GA D R L L + Sbjct: 804 AASAIQRRS---PFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGLYSCLKEL 860 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 K +F + N R + E GF+ HPL Sbjct: 861 V------GKEDDGAQMTLFDISVNKPEKTVK-----PWNFFERTQCEFDAFGFFLFDHPL 909 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV---TFSE 1022 Y+ L+ +A ++ + ++R + + T ++ Sbjct: 910 FPYRKFLK------------LSPNQ---IAGVITEL-RIRSRGDRKFAVMHVSTVND 950 >gi|162145940|ref|YP_001600398.1| putative DNA polymerase III alpha subunit [Gluconacetobacter diazotrophicus PAl 5] gi|161784514|emb|CAP54047.1| putative DNA polymerase III alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1054 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 274/1038 (26%), Positives = 453/1038 (43%), Gaps = 74/1038 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 + LQV S +S L GA S + ++ A A+ I D N+L ++ A A G++ Sbjct: 2 SRYAELQVTSYFSFLRGASSPLELFEQARALGIAALGIADRNSLAGMVQAHVAARATGVR 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC+LD+ P +++ + Y RL L+S GK Sbjct: 62 LVVGCRLDLAD----------------FPPVLVYPTDRAAYGRLCRLLSLGKSR-AGKAR 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 + L G L +L + + L K F DR Y+ L Sbjct: 105 CHLLWEDLVAWGDGLLAILVPDVA-----------DEACALHLRKLKDAFHDRAYMALTL 153 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R D+ R + LA+ +P V TN+ LF + + DV+ + H+T + + R Sbjct: 154 LRRPNDQMRLYALANLAHRARVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFAR 213 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK EM +F PEA++ T+ I RC F L A E + Sbjct: 214 ERHADRYLKPPQEMARLFGRYPEAVDRTIAIMERCRFSLDDLAY----QYPDEVSVPGQT 269 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L G +G + L+ EL +I RM ++ YFL V +++ Sbjct: 270 PQQALEVLTWEGARRFYPEG------IPDEVTASLNHELALIGRMNYAPYFLTVNSIVRY 323 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I GRGS A S Y L IT IDP R SLLFERF++ +R PD D+DF R Sbjct: 324 ARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHAR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R++VI++V YG ER A +AK ALRDVG+ + +P + L I + Sbjct: 383 REQVIQWVYGHYGRERAALTAVVIRYRAKGALRDVGKVMGLPEDLIGTLSGQIWGWSKNA 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 Q + R+ L+++ L G+ RH S H G V+ L +LVP+ Sbjct: 443 DPEQFRDTGIDLSDRRIRLT-----LDLACCLIGVPRHLSQHPGGFVLTHDRLDELVPIE 497 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 D + +++ I+ +K D L L LT ++K LD LA+ + L+ IP +D Sbjct: 498 PAAMDDRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQRFALATIPAED 557 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 558 PLTYAMIRRADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 617 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722 R+ G E P ++ +LK+T G+ ++QEQ MQ+A + + ++ SEAD LRRAM Sbjct: 618 RREGIEPEEYPTPELEKVLKKTLGIPLFQEQAMQVAMVCADFTASEADQLRRAMATFKNT 677 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + + + + G NG ++ A I++ L F YGF +SHAA++A+++Y ++W+K H Sbjct: 678 GTIGRFQTKLVEGMKANGYTEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWLKCH 737 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835 +P FLAA + + + +DAR+ + I P VN D + + Sbjct: 738 HPDVFLAALLNSQPMGFYAPAQLVRDAREHGVGIRPICVNASRWDSTLEGPETACGRFAV 797 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894 ++ +KG+ A I+ A +PF S++D R + L L A A Sbjct: 798 RLGMSLVKGLANADAARIVAARGARPFASVDDLWRRA---GVPVAALTHLAEADAFRPAL 854 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G +R + L ++ ++ +FA + + Sbjct: 855 GLARREALWAIKALRDE-----------PLPLFAAAAVAREAEEPDVLLQPMRAGAEVTR 903 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014 + +G HP+ + LR+ E+ G + A +V+ +Q+ + +G Sbjct: 904 DYNRIGLTLRDHPVAFLRDDLRQRKFFSCREAHEARDGKRLDAAGLVLVRQRPGSAEG-- 961 Query: 1015 IGWVTFSEPAKEYEANFF 1032 + ++T + + + Sbjct: 962 VVFLTLEDESGVLNVIIW 979 >gi|256422395|ref|YP_003123048.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] gi|256037303|gb|ACU60847.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588] Length = 1055 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 249/1033 (24%), Positives = 450/1033 (43%), Gaps = 67/1033 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 +V LQV S++S L GA + ++++ A IAITD N L + A A GI+ I Sbjct: 3 YVELQVTSNFSFLRGASHPDELVEQAAEYGYKEIAITDRNTLAGIVRAHAAAKAKGIRII 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 C+LD+ PS++ + Y RL L++ L + K Sbjct: 63 PACRLDLQDG----------------PSLLAYPTDQAAYSRLSSLLTTGNLRAE-KGDCL 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNLQR- 188 + + + ++ + + A + L +K G +LY+++ R Sbjct: 106 LYKKDVYAYAAGMIFIVVPPE-----QLNTKFDFETAFKNDLKEYKDKLGSQLYLSVTRS 160 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 + G D R ++ QL+ + +PL ATN+ + E + D+L V + R Sbjct: 161 YLGDDHKRLYRLAQLSALYHIPLAATNDVHYHHPERRQLQDILTCVREKCTIYNAGFRLH 220 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +LK +EM +F PE + N IA C F L+ + P + E + Sbjct: 221 QNAERHLKTPAEMQRLFRQYPETISNARHIADACRFTLESLKYVYPEELTTEG----RTP 276 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + EL + G + R + + +EL I M ++ YFL V D +++A Sbjct: 277 QEELTYLSWEGAKERFGDD------IPEKISSAISYELTFIEEMNYAAYFLTVHDIVRFA 330 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S Y L IT ++P + LLFERF++ R PD D+DF +RR Sbjct: 331 RSQHIL-CQGRGSAANSTVCYVLGITSVNPTKIDLLFERFISSARNEPPDIDVDFEHERR 389 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV NKYG +R A + T K A+RDVG+A+ + ++R+ I Sbjct: 390 EEVMQYVFNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRMSTSIWRYTDEWF 449 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + DP + ++L +++++ G R H G VI L +L P+ Sbjct: 450 DEGRLLEH----GLNPEDPHLKKVLALTKQMMGFPRQLGQHTGGFVITQGKLHELCPILN 505 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + ++N I+ G +K D L L LT ++K+ D Q L+ IP DD Sbjct: 506 ARMENRTCIEWNKDDIDTLGFMKIDVLALGMLTCIRKAFDLAKQHYGKDYTLANIPEDDP 565 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 Y +++ T+G+FQ+ES + L ++P D++ V++ RPGPI +V+ + Sbjct: 566 AVYEMISHADTIGVFQIESRAQQSMLPRLRPQRFYDLVIEVAIVRPGPIQGDMVHPYLRR 625 Query: 667 GK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEE 724 ++ P ++ +LK+T GV ++QEQ M IA + ++ +EAD LRR+M Sbjct: 626 RNGQEAPDYPPQLEDILKKTLGVPLFQEQAMNIAIKAASFTPTEADELRRSMATFRLNGV 685 Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 ++K +++ I G + NG A IF+ L F YGF +SHAA++A++ Y ++++K +YP Sbjct: 686 IEKFEKKLIDGMTANGYELDFAQRIFKQLKGFGSYGFPESHAASFALLVYVSSYLKCYYP 745 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839 F A + + + DAR ++++ P +N D + + + Sbjct: 746 DVFACALLNSMPMGFYQPAQIVSDARAHHVEVRPVDINHSSWDNTLEEKETIPHALRLGF 805 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +KG+ ++ A S+ R +++ LE L A A G R Sbjct: 806 RQVKGLNQEEMDVLLSARKKGI-TSI--LALR--EAGVSQTALEKLADADAFRSIGLDRR 860 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 + L + ++ + +F + + + + ++ + + Sbjct: 861 RALWEISSLHD-----------RPIGLFTGQASESTVEQPV-DLPEMSAPEHVVQDYNAM 908 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 HP+ + L + + ++ G +++A +++ +Q+ T G + ++T Sbjct: 909 ALSLKAHPVSFVREKLSLLHVTSVKDLATIPDGMPVKVAGLILVRQRPGTASG--VCFIT 966 Query: 1020 FSEPAKEYEANFF 1032 + F Sbjct: 967 IEDETGCANLVVF 979 >gi|170742616|ref|YP_001771271.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46] gi|168196890|gb|ACA18837.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46] Length = 1075 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 267/1042 (25%), Positives = 444/1042 (42%), Gaps = 77/1042 (7%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 V LQV + YS L GA S + A A+ +TD +++ ++ + A A G + + Sbjct: 3 VELQVTTHYSFLRGASSPEELFATAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 GC+LD+ + ++++ + Y RL L++ GK + Sbjct: 63 GCRLDL-------------SGPDAGTALLVYPTDRAAYGRLCRLLTLGKGR-AGKGGCTL 108 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQ-RH 189 LS L EGLI + + A +RL +++FG R + L R Sbjct: 109 DLSDLAAW-REGLIAV-----------LLADRPDEALPRRLGRLREVFGRRAHCALTRRF 156 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248 D+ R +V LA +P VAT + L E DV+ + T + R Sbjct: 157 GVNDQLRLDRVADLARAARIPTVATGDVLCHVPERRLLQDVVTCIRLGTTIDAAGFARER 216 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 +L+ +E +F+ PEA+E IA C F L P + ++ + Sbjct: 217 HAGRHLQAPAETARLFARHPEAVERARAIAEACRFSLDDLTYTYPDEVGEDG----RSAL 272 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 L + G R G ++ +++ E +IAR ++ YFL V +++A+ Sbjct: 273 ERLETMTLEGAARRYPDGV------PEEVHRQIRHEFELIARKGYAPYFLTVEAIVRFAQ 326 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + I GRGS A SV Y L IT IDP+R LLFERF++ +R PD D+DF +RR+ Sbjct: 327 RQGIL-CQGRGSAANSVVCYCLGITAIDPVRQKLLFERFVSDNRDEPPDIDVDFEHERRE 385 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI++V YG R A T A+ A+R+VG+ L +P L +L+ V Sbjct: 386 EVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVWGWSREGVG 445 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 ++R LAD + L++++ L G RH H G V+ L +L P+ Sbjct: 446 ----EREARALNLNLADRRLRLTLDLARALIGTPRHLGQHPGGFVLTLDRLDELCPITPA 501 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIPFD 604 + +++ IE +K D LGL L L+++ + L + +++ IP + Sbjct: 502 TMENRQTIEWDKDDIEALRFMKVDVLGLGMLGCLRRAFELLGEHRGETDPPREIAAIPPE 561 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D TY ++ TLG+FQ+ES L MQP + D+ V++ RPGPI +V+ Sbjct: 562 DEATYAMIRRADTLGVFQIESRAQMAMLPRMQPRNLYDLTIEVAVVRPGPIQGDMVHPYL 621 Query: 665 KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 + + E+ + +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM Sbjct: 622 RRRRGIERPEYPSEALRSVLERTLGVPLFQEQAMQVAIVAAGFTPAEADGLRRAMATFKA 681 Query: 723 E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 ++ +E+ I+G +NG + A F L F YGF +SHAA++A+I+Y ++W+K Sbjct: 682 NGKIGLYREKLIAGMIRNGYAADFAERTFRQLEGFGSYGFPESHAASFALIAYASSWLKC 741 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836 H+P F A + + + +DAR+ + + P VN D + + Sbjct: 742 HHPDVFCCALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEKAEGPRLAVR 801 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L ++G+ I F S ED R + R LESL A A G Sbjct: 802 LGLRLVRGLANAEGARIATVREADLFRSPEDLWRRT---AVPLRALESLAAADAFGSLGL 858 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVENSSVR 951 R + L ++ + +FA + Sbjct: 859 GRREALWAIRGL-----------APVPLPLFAAADAREAAIRPELDEPAVALAPMPEGAG 907 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + R HP+ +P L + G+ G + +A +V+ +Q+ + K Sbjct: 908 VVADYRAASLSLGRHPVAFLRPDLARDGMSACAALRRLRDGARVTVAGLVLVRQKPGSAK 967 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 968 G--VMFITLEDETDVANLVVWP 987 >gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 1567 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 319/1056 (30%), Positives = 527/1056 (49%), Gaps = 83/1056 (7%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ---- 68 HS YS L+ + +N ++ K + A+ I D N+ A +F + A I+ Sbjct: 267 HNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQIKKTYQ 326 Query: 69 ---------------------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101 P+IGC+ I D + K ++VL Sbjct: 327 TYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYIS--DRPEQKQFTKDDPDRRTNVVL 384 Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161 L GY+ L++L S Y+ RI + E + LI LT G+ G + Sbjct: 385 LAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEF-KDNLIALTAGTLGDVPSTVLE 443 Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFL 220 Q E+ +K FG+ YV +Q H + ++V + A +++ ++A N + + Sbjct: 444 FGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNETFYT 503 Query: 221 SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273 ++ D D+L + +S R + Y+KN E+ F P+A E Sbjct: 504 NKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDAFEA 563 Query: 274 TVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325 E+ + + P E + D ++ E LR+ AG E R + Sbjct: 564 YTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKRYPE 623 Query: 326 GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385 + R+RLDFEL VIA+ + GYFLIV DF A+K + VGPGRGS AGS Sbjct: 624 -------ITDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSA 676 Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445 AY IT++DP+ ++LLFERFLNP+R+SMPD DIDF + RD++I++V KYG VAQ Sbjct: 677 VAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKNNVAQ 736 Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREAR 502 IIT+ L K+A++D GR L + + + + KLIP+ P ++ + + Sbjct: 737 IITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPEDKVLA 796 Query: 503 LAD--------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DL 553 +L +Q++EG R+ HA G++I +S L+P+ + D+ Sbjct: 797 QEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAAKDPDI 856 Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612 V+QF+ E AGL+K DFLGL+TLT+++ ++ + +R ++D+ +P DD +TY L Sbjct: 857 LVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTEIDIDHVPLDDAKTYQLF 916 Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672 T+GIFQ ES GM++ + ++P D+IA+ +LYRPGPI I + NRKN E+ V Sbjct: 917 QEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIKYIPNFINRKNEIEETV 976 Query: 673 SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732 L+ET G+ +YQEQVM ++Q L+ ++ EAD LR+AMGKK + +DK +F Sbjct: 977 YDLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKDRATLDKMYPKF 1036 Query: 733 ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792 + KN ++ I++ FA+Y FNKSH+ YA+I+Y TA++K +YP E++A+ M Sbjct: 1037 LEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHTAYLKANYPAEYMASVM 1096 Query: 793 TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851 T ++N ++I F +D + + ++ P+VN +F V + +I + L AIKG+G+ + Sbjct: 1097 TNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQIRFGLGAIKGIGSGPSE 1156 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ------- 903 I++ ++ + ++ DF ++ S ++N+RV ESLV AGA D Y R Q Sbjct: 1157 AIVDGRKNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEVDRYHRAQYFDIDITGKT 1216 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962 +++ + +Y Q + ++ ++FA + ++ + + E+ ++GFY Sbjct: 1217 TIERLLRYGQSFQDSKNEIENSLFADFAEEVKIEQPKINPAPEWQNMHMLNKEKEIIGFY 1276 Query: 963 FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997 S HPLD Y+ + + G +E + + + + Sbjct: 1277 LSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEI 1312 Score = 41.7 bits (96), Expect = 0.62, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 981 KGYEESVATIRGN-NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027 ++E A +A +V K + G +I +VT + + Y Sbjct: 1389 LSWKEKQALKNNTPEYMVAGLVTEYTVKDGKNSGEKIAFVTLEDYSGSY 1437 >gi|325168586|ref|YP_004280376.1| DNA polymerase III alpha chain [Agrobacterium sp. H13-3] gi|325064309|gb|ADY67998.1| DNA polymerase III, alpha chain [Agrobacterium sp. H13-3] Length = 1085 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 270/1042 (25%), Positives = 447/1042 (42%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ LQV + +S L GA S + D AI + D N+L + + + A G++ Sbjct: 2 SYAELQVTTHFSFLRGASSAQELFDTAKLLGISAIGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ S+++ Y RL L++ K + Sbjct: 62 VVGCRLDLADGM----------------SLLVYPMDRPAYSRLTRLITLGKSRGG-KNNC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + + +EG+I + + +L +FGDR YV+L R Sbjct: 105 ILHWDDVMAY-SEGMIGIL------VPDL----PDATCAAQLRKLAHVFGDRAYVSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ +A + V TN+ LF + D++ + H+T + Sbjct: 154 RRPNDQMRLHEISNMAARFRVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F PEAL ++EI RRC F L+ P D Q Sbjct: 214 RHADRYLKPPEEMARLFPRYPEALARSMEIVRRCKFSLEELTYQYPEEAIVPGKDAQASL 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +G D + + EL++I MK++ YFL V +++A Sbjct: 274 EHY----VWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ Y H++ A T +AK A+RDVG+AL +P + L + + Sbjct: 383 EEVIQWIYKTYRHDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 SEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606 D + +++ +E +K D L L LT + K+ + + +G +DLS I +D Sbjct: 498 ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFHLIREDKGENLDLSTIQQEDA 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + GKE + P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + KE+ +SG KNG S A F L F YGF +SHAA++A+I+Y + ++K HY Sbjct: 678 GVSRFKEKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHY 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837 P F AA + + + DA + +++ P VN D + + + Sbjct: 738 PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLEKIGSIDRHAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896 +KG+ A I+ A + PF S++D R + L L A A Sbjct: 798 GFRQVKGLAVADAARIVTARMNSPFLSVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951 R L ++ ++ +FA I ++ Sbjct: 855 ERRDALWAIKALRDE-----------PLPLFAAATEREMAAIAEQQEPEVALRQMTDGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + G HP+ + L I E++ G + A +V+ +Q+ + K Sbjct: 904 VIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGPANIVVWP 983 >gi|262196390|ref|YP_003267599.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365] gi|262079737|gb|ACY15706.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365] Length = 1074 Score = 575 bits (1483), Expect = e-161, Method: Composition-based stats. Identities = 284/1075 (26%), Positives = 458/1075 (42%), Gaps = 110/1075 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 ++ L S++S LEGA + ++++ A A+A++D + L+ + A G + Sbjct: 2 STYAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKIGFK 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I G Q+ +D IVLL GY L L+++ K S Sbjct: 62 LIHGAQVSVDDGS----------------QIVLLCRDRAGYANLCHLLTKGRRRSD-KGS 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSG---------------PIDRAFFFNSSQVAEKRLLT 173 ++ + GLI L GG+ I R + Sbjct: 105 SQVSWREVCA-HAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADD 163 Query: 174 FKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 ++ FGD LY RHR + E+++ A LP+ A L+ S DVL Sbjct: 164 LREAFGDALYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLT 223 Query: 233 AVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 + H +S R R +H L + +F D P A+ T++IA RC F L Sbjct: 224 CLRHHVTLSTAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYR 283 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P K LR + G R +G D R +L EL +I + Sbjct: 284 YPSERLPSG----KTTSEWLRELSFEGARWRY------RGEVPADVRAQLTRELALIDEL 333 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 + GYFL + + +++ + I GRGS A S Y L IT +DP+R LLFERFL+ + Sbjct: 334 DYGGYFLTMYEIVRFCRAQGIL-CQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRE 392 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R PD D+D DRR+EVI++V +KYG + A + + ++A+RDVG+ L +P + Sbjct: 393 RAEPPDIDLDIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATS 452 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 +DR KL+ + A+ P+ L ++ ++ RH S H G Sbjct: 453 LDRCAKLLSHYEGIT------AEALEQAGMDPHLPAHQHLGRLASEILDFPRHLSIHPGG 506 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LA 590 ++G P+ LVP+ + V Q++ +E GL K D LGL L L + D Sbjct: 507 FLLGHEPVHSLVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSE 566 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 RG+ + ++ IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ Sbjct: 567 HRGIDLSMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIV 626 Query: 651 RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGPI +V+ R++G EKI H ++P+L+ T GV ++QEQVM++A + + Y+ Sbjct: 627 RPGPITGGMVHPYLRRRHGLEKIEYPHESLEPVLERTLGVPLFQEQVMRLAMVAADYTPG 686 Query: 709 EADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD LRR M + +D+ +ER +S ++ GI+ A +FE + F +YGF +SHAA Sbjct: 687 EADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAA 746 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 ++A+I+Y TA+M+ H+P E+ A + + DAR+ + + P V D Sbjct: 747 SFALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWD 806 Query: 828 FKVGD---------------------------NRIYYSLAAIKGVGTTTARHIMEASADK 860 + I L +KG+ I +A A Sbjct: 807 CTLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARARA 866 Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920 PF L DF R +L+ R L +GAL FG +R +L + Q+ Sbjct: 867 PFADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVLWQVRGHQRAKS------- 916 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF---SGHPLDVYKPILRK 977 + + + + + + GHPL+ + LR Sbjct: 917 ---------DTLSLPQTGPAPSLAQLDQLDEILWDYQA---SLHSTRGHPLEPLRASLRA 964 Query: 978 MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 I G +R A +V+ +Q+ T G + ++T + + + Sbjct: 965 QNIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIW 1017 >gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] gi|151280665|gb|ABR89075.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille] Length = 1041 Score = 575 bits (1483), Expect = e-161, Method: Composition-based stats. Identities = 264/1051 (25%), Positives = 448/1051 (42%), Gaps = 95/1051 (9%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PS+ L S++S L GA ++++ ++AITD +L + +A + Sbjct: 6 PSYAELHCRSNFSFLHGASHPEELVERACDLGYSSLAITDECSLAGVVRAHVEAKKRQLH 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG ++ + ++ L GY L EL++ K S Sbjct: 66 LIIGSEIKLACGSK----------------LLFLACNRNGYGNLSELITLARRRAA-KGS 108 Query: 129 VRICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + S L L L + + + S+ + ++ F R ++ ++ Sbjct: 109 YTLYRSDLDAHAAIAHLRHLPDCLTILLPQ--RGCSAVELAGQAAWLQQNFAGRAWIAVE 166 Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H D + +Q+ ++A LPLVA + L D L AV +++ Sbjct: 167 LLHWSGDEHWLAQLKEIAAQQALPLVAMGDVLMHVRSRKPLQDTLTAVRLGKSIAECGLD 226 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 RS + L+ ++EIA C+F L+ P I + + Sbjct: 227 LQPNA-EQHLRSRLRLSQIYPAALLKESLEIAALCTFSLEELRYQYPEEIVPAGETMS-- 283 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 LR G R + I +++ R++ EL++I + + YFL V D +++ Sbjct: 284 --AYLRRLVYEGATQRRYKNGI-----PEEFHVRIEHELSLIQELHYEPYFLTVYDIVKF 336 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S+ Y L IT++DP R S+LFERF++ +R PD D+DF R Sbjct: 337 ARSEGIL-CQGRGSAANSIVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDFEHQR 395 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV++Y+ KYG R A + + ++A++DVG+AL + + Q++RL + Sbjct: 396 REEVMQYIYQKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQINRLSQSHKWWDGKQ 455 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + ++ P V +L+E++Q L G RH S H G VI L++LVP+ Sbjct: 456 IGADRLQEN----GFDPESPIVQKLVELTQTLIGFPRHLSQHTGGFVISQDSLARLVPIE 511 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605 D V +++ ++ GL+K D L L L+ ++++L+ + +RG +L I DD Sbjct: 512 NASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIRRALEMISLRRGHDFELQDIHDDD 571 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662 TY ++ T+G+FQ+ES L ++P C D++ V++ RPGPI +V+ Sbjct: 572 AATYEMICAADTIGVFQIESRAQMSMLPRLRPKCYYDLVIQVAIVRPGPIQGGMVHPYLK 631 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721 NR+ K+ I+ I+ L T GV I+QEQVMQIA L +GY+ EAD LRR+M Sbjct: 632 NRRMNKDDIIYPGDEIEEALSRTCGVPIFQEQVMQIAVLAAGYTAGEADDLRRSMAAWKR 691 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++K + + +G NG A +FE + F +YGF +SHAA++A++ Y +AW+K Sbjct: 692 KGNLEKHEIKLKTGLINNGYDPGFADRLFEQIKGFGEYGFPESHAASFALLVYVSAWIKR 751 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836 H P FLAA + + + QDA++ + + P + + + D + Sbjct: 752 HEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPVDIMLSETESTMEDMHAQYPAVR 811 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG- 895 L +KG+ T A I++A +PF S +D R LD Sbjct: 812 LGLHMVKGLSTDAAERIIDARLRRPFASTDDLARRA-----------------VLDQHEL 854 Query: 896 -------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942 R Q + + + + I Sbjct: 855 GALARANALLALTGHRRQAKWEVAAML------------PPPALLRDAPIIEAPVI---- 898 Query: 943 FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002 + + G HPL + +P L++M + E R +V Sbjct: 899 LPPASEGQEIIADYASTGLTLQRHPLALLRPRLKQMNLSTALEMKGFADRKLARTTGIVT 958 Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T KG+ +VT + +P Sbjct: 959 MRQRPPTAKGTM--FVTLEDETGITNVIIWP 987 >gi|327188040|gb|EGE55268.1| DNA polymerase III, alpha chain [Rhizobium etli CNPAF512] Length = 1084 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 266/1042 (25%), Positives = 448/1042 (42%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ LQV + +S L GA S + + A+ + D N+L + + + A G++ Sbjct: 2 SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ S+++ Y RL L++ K + Sbjct: 62 VVGCRLDLADGM----------------SVLVYPMDRSAYSRLTRLITLGKSRGG-KNNC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + + +EG+I + + + +L +LFGDR YV+L R Sbjct: 105 ILHWDDIVAY-SEGMIGIL------VPDL----PDDLCAIQLRKMAELFGDRAYVSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ +A ++ V TN+ LF + D++ + H+T + Sbjct: 154 RRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F +AL T+EI RC F L+ P D Q Sbjct: 214 RHADRYLKPPEEMARLFPRYAQALARTLEIVHRCKFSLEELTYQYPEEAIVPGKDAQASL 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ R +G D + + EL++I MK++ YFL V +++A Sbjct: 274 EHY----VWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ Y E+ A T +AK A+RDVG+AL +P + L + + Sbjct: 383 EEVIQWIYKTYTKEKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 SEEIPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 D + +++ +E +K D L L LT + K+ D + + + DLS I +D Sbjct: 498 ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQDLDLSKISQEDA 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + GKE + P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + K++ +SG KNG S A F L F YGF +SHAA++A+I+Y + ++K H Sbjct: 678 GVSRFKDKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHC 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837 P F AA + + + DA + +++ P VN D + + + Sbjct: 738 PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIGGSDRHAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896 +KG+ A I+ A + PF S++D R + L L A A Sbjct: 798 GFRQVKGLAVADAARIVAARMNNPFASVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951 R L ++ ++ +FA + I ++ N Sbjct: 855 ERRDALWAIKALRDE-----------PLPLFAAAAEREATAIAEQQEPEVALRQMNDGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + +G HP+ + L I E++ G + A +V+ +Q+ + K Sbjct: 904 VIEDYSHIGLTLRQHPVAFLRKGLSVRNIITCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGPANVVVWP 983 >gi|323466669|gb|ADX70356.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus H10] Length = 1041 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 330/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 12 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 72 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ + K+L D LY+ + + Sbjct: 122 LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 179 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 + V L+ +LPL+AT +S +L+ D L A+A + + Sbjct: 180 -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 239 HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----ATSEE 294 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL VI +M F YFLIV D I + + Sbjct: 295 YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 350 VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP Sbjct: 410 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 469 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A R A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 470 EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 528 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D +T Sbjct: 529 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES G+RQ L + PD ED++A+ ++YRPGP+ NI + RKNG+E Sbjct: 589 QLFQQGKTDAVFQFESVGIRQVLRKLHPDNFEDLVAVNAIYRPGPMQNIDAFVRRKNGQE 648 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 649 AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+ K G +K IA +++ + +FA+YGFN+SHA AY I+Y A++K HYP F Sbjct: 709 GKFIADTIKQGHTKAIAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 769 AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYTLKNKQILVGLKAIKGLRVDF 826 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + D I Sbjct: 827 AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + E++VLGF + PL Sbjct: 885 ANVQLTGRN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + + G + ++ +Q +T+ G + + +F++ + E E Sbjct: 935 AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991 Query: 1030 NFFP 1033 FP Sbjct: 992 VIFP 995 >gi|325845299|ref|ZP_08168602.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1] gi|325488660|gb|EGC91066.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1] Length = 1010 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 334/1024 (32%), Positives = 562/1024 (54%), Gaps = 56/1024 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLL ++ + ++D +Q +A+ + + SA++F ++P Sbjct: 2 SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +++ + V+L GYQRL+++ S + KQ Sbjct: 62 LIGMSVNVQGDSFIDEW-------------VILARNQCGYQRLLKIASFI-----AKQEG 103 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + L+++T G G + + + ++ K LY+ L R Sbjct: 104 VVLYEQVLPFVQD-LVVITSGEHGMLCSGIEEYKEERLLQYYESYLKSIP-HLYIGLMRV 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ A P+VA N+ +L +ED + +L A+ + V ++ P V Sbjct: 162 NQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EELPLVD 219 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y K+ +M +F+D+P AL T +IA C + +H +LP++ E ++ Sbjct: 220 YERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEGV----SSDS 275 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GLE R +Y RL +EL+VI +M FS YFLIV DF+++AK Sbjct: 276 YLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRYAKS 326 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF +RRDE Sbjct: 327 HDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNRRDE 386 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YVQNKYG V QI TFG+ Q+++A RD+ R Q+ + ++++ I + Sbjct: 387 VIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS---TLK 443 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + R+ P ++ + + ++K+EGL RH S HAAG++I D L+ + + Sbjct: 444 EIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI-MEG 502 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608 + + V+Q+ + +E GL+K DFLGLK L +LQ+ + + D++ IP+DD +T Sbjct: 503 PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYDDLKT 562 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y +++ T G+FQLES GMRQ L ++P+C+EDIIA +L+RPGP++ I ++ RK+ + Sbjct: 563 YEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAARKHHE 622 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + I HP + +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE ++++ Sbjct: 623 QPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEILERE 682 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 ++ F+ A + G + IA ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP F+ Sbjct: 683 QKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYPSYFM 742 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 +++ + + ++ ++A+Q +I ++PPS+N+ + +++ + I +SL IK +G Sbjct: 743 TVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKHIGMN 802 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 AR I+ + S DF SR LN+R E L+ GA+D FGY+R L +L I Sbjct: 803 LARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHNLTAI 861 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++++ +F + K TL +S+ + + E+ +LGFY + HP+ Sbjct: 862 LDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLNSHPI 907 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++ G + + + I V ++ + +KG + ++ S+ Sbjct: 908 HLMRDQAKEKGWYFPSDLIHL-NVSTITCVGFVEKFREIRDKKGKLMAFMDISDENGTVS 966 Query: 1029 ANFF 1032 F Sbjct: 967 VTIF 970 >gi|108761967|ref|YP_632162.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622] gi|108465847|gb|ABF91032.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622] Length = 1013 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 271/1032 (26%), Positives = 462/1032 (44%), Gaps = 76/1032 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + L S++S L GA ++ A A+A+TD + L+ ++ A G++ Sbjct: 2 DYAELVCRSNFSFLRGASHPEELVATAARLGLGALALTDADGLYGVVKAHLAAKEHGVRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ++ P +V+ + GY L LVS+ + K Sbjct: 62 ILGAELTLEDG----------------PPVVVYAADGTGYSNLCALVSQSRMT-HPKGEA 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + + G + +++++ + F +R +V + R Sbjct: 105 GLPWRAVADR--------SAGLL-------ALLPAPAPFEQVVSLAEAFPERFHVGICRT 149 Query: 190 RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 D RE++ +LA +PLVA N+ DVL+++ H T V + R Sbjct: 150 LSAGDAEREARAERLALELGVPLVAHNDVHTHHRRRQALQDVLVSIRHGTSVDRAGTRLL 209 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + LK+ +M +F+D PEAL E+A RC L P E + Sbjct: 210 PNAERTLKSPRDMARLFADRPEALARAAELASRCHASLDDLHYRFPEEGLPEG----RTA 265 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR GL R +G ++++ EL +IA + F+GYFL + D +++A Sbjct: 266 DAHLRVLTYEGLRFRYPEGV------PPAVVKQIEHELKLIAALDFAGYFLALWDIVRFA 319 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S YAL IT IDP+R LLFERFL+ +R PD D+DF +RR Sbjct: 320 RARGIL-CQGRGSAANSAVCYALQITAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERR 378 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV K+G + + + ALR+ G+AL + QVDRL K+ ++ V Sbjct: 379 EEVLQYVYEKHGRRHAGMVCEVICYRGRLALRETGKALGLSLDQVDRLSKVSASN-GFDV 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + + D V + L ++ +LEG RH S H G V+ PL++LVP+ Sbjct: 438 TPDVLRE----AGLSAEDGRVQKTLALAMELEGFPRHLSIHVGGFVMTREPLTELVPVEN 493 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 V Q+ I GL+K D L L LT L K + + + L+ +P +D Sbjct: 494 AAMPGRTVIQWEKDDINAVGLLKVDLLALGMLTALSKCFALIREHHGRELSLATVPAEDP 553 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 + Y +L T+G+FQ+ES L ++P D++ ++L RPGPI +V+ R Sbjct: 554 KVYDMLCEADTVGVFQIESRAQMNMLPRLRPRTFYDLVVEIALIRPGPIVGNMVHPFLRR 613 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723 +NG+E++ + +L +T GV ++QEQ M++A + +G++ EAD LRR + K+ + Sbjct: 614 RNGQEQVEYPSEAVKEILGKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRVLSHKRAES 673 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + + RF+ G G ++ A F+ FA YGF +SH+A++A+I+Y ++W+K HY Sbjct: 674 MLLQYRGRFVEGCVSRGYTRKQAEEWFDNFRGFAHYGFPESHSASFALIAYASSWLKCHY 733 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAA 841 P F AA + + DA++ + + P V D + + + L Sbjct: 734 PAAFTAALLNSQPMGFYAPHTLVADAQRHGVVVRPVDVRHSSWDCTLEEGGAALRLGLRM 793 Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901 +KG+G + R + A + F + D + R L L AGAL SR Q Sbjct: 794 VKGLGESAGRRVATAKREG-FRDVGDLAR---WSRAPRHELTRLALAGALSSLCGSRRQA 849 Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961 L L + +++F T + + R + +G Sbjct: 850 LWELQAL----------GPLDSDDLFFGMAMDG----TAVELPSMDVLERVCADYDTVGL 895 Query: 962 YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021 HPL++ +P+L++ G E G + + M++ +Q+ T KG + +++ Sbjct: 896 SLEKHPLELLRPVLKQQGAVTAEGLKKVAHGRRVAVGGMLICRQRPPTAKG--LCFISLE 953 Query: 1022 EPAKEYEANFFP 1033 + P Sbjct: 954 DETGIANLVVPP 965 >gi|153010470|ref|YP_001371684.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] gi|151562358|gb|ABS15855.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 1059 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 287/1051 (27%), Positives = 462/1051 (43%), Gaps = 91/1051 (8%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P++ LQV S +S L GA S + AA A+A+TD N L + + A AG Sbjct: 2 SAPAYAELQVTSHFSFLRGASSAEELFAAAAAMGIEALAVTDRNTLAGIVRAHEAAKEAG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 ++ I+GC+LD+ S+++ + Y RL L+S GK Sbjct: 62 VRLIVGCRLDLACGM----------------SVLVYPTDRAAYSRLCRLLSLGKGR-AGK 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRL 182 + L G EGLI++ +A++ RL + FGDR Sbjct: 105 ARCHLEWDDLVAYG-EGLIVVLA--------------PDLADETCGLRLRRLRDAFGDRA 149 Query: 183 YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R R D+ R ++ LA +P V TN+ LF DV+ A+ H+ V Sbjct: 150 YLGLTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNLTVD 209 Query: 242 Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 R D YLK +EM +F+ PEAL T EIA RC F L P Sbjct: 210 ALGTRRDRHADRYLKPPAEMHRLFARWPEALARTREIADRCRFSLDELRYQYPEER---- 265 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 DD + L G R +G + L EL +I ++ ++ YFL V Sbjct: 266 DDPALTPQETLERLTWEGAASRYPEGV------PDEVTAALKHELALIGKLDYAPYFLTV 319 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +++A+ I GRGS A S Y L IT IDP R LLFERF++ +R PD D+ Sbjct: 320 NSIVRFARSRGIL-CQGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDV 378 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR+EVI++V YG ER A T ++K ALRDVG+AL +P + L + Sbjct: 379 DFEHERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKALGLPEDLIQTLSGQLW 438 Query: 481 NDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537 V+ Q + D + + R RL ++ +L G RH S H G V+ Sbjct: 439 GWSEAGVTEQQLRDLNLNPQDRRLRLTLE-------LAAQLRGAPRHLSQHPGGFVLTHD 491 Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596 L LVP+ + +++ I+ +K D L L L+ +++ LD LA+ Sbjct: 492 RLDDLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRL 551 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 DL+ IP +D TY ++ TLG FQ+ES L ++P D++ V++ RPGPI Sbjct: 552 DLASIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQ 611 Query: 657 NIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 +V+ R+ G E++ P ++ +L +T GV ++QEQ M++A +G++ EAD+LR Sbjct: 612 GDMVHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLR 671 Query: 715 RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 ++M + K ++R ISG + G + A F+ L F YGF +SHAA++A+I+ Sbjct: 672 KSMATFKHTGGVSKFRDRLISGMIERGYEQDFAERTFQQLEGFGSYGFPESHAASFALIA 731 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833 Y +AW+K +P F AA + + + +DAR+ +++ P +N D + Sbjct: 732 YASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHEVEVRPVCINASRWDCTLEPT 791 Query: 834 ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887 + L +KG+ A I+ A D+ F S++D R + L+ + Sbjct: 792 GDESRFAVRLGLRMVKGLANAHAAAIVAAQGDEMFTSVDDLWRRA---GVPVAALDQIAA 848 Query: 888 AGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-- 944 A FG +R + ++ ++ +FA + Sbjct: 849 ADGFRPAFGLARREAQWAIKGLRDE-----------ELPLFAAASEREGRTVPELDEPAI 897 Query: 945 ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001 + + +G HP+ + L + I E++A + A +V Sbjct: 898 ALRAMPAGREVVEDYGHIGLSLRRHPVSFLREDLARRRIVTCAEAMAARDQRWLEAAGIV 957 Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +Q+ + G + ++T + + Sbjct: 958 LVRQRPGSANG--VMFITLEDETGIANLVVW 986 >gi|68171940|ref|ZP_00545254.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998637|gb|EAM85376.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 1074 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 438/983 (44%), Positives = 628/983 (63%), Gaps = 38/983 (3%) Query: 54 SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113 +LEFS A + G+QPIIGC + + ++ +VLLV GY ++ Sbjct: 2 GSLEFSDYASSLGVQPIIGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIV 49 Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 LVS + Q + R+ L L ++ +G+I+LTGG G + + N + Sbjct: 50 NLVSNSFKDSQSNKVNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYG--IIDK 106 Query: 174 FKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232 F LYV LQRH + E +V AY +LPLVATN+ LF + D+ AHDVL Sbjct: 107 LLLAFNGNLYVELQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLS 166 Query: 233 AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292 ++ ++Q+ R T +HY K+ EM +F D+PEA+ NTV IA+RCSF+ + P+L Sbjct: 167 CISDGNYIAQEGRKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPML 226 Query: 293 PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352 P F K E EL ++A+ GL+ RL +++ ++ Y +RL +EL++I M Sbjct: 227 PHFPCSSG----KNESQELISQAINGLDNRLKSKSLSTEQVSK-YYERLHYELDIIISMD 281 Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 ++GYFLIV+DFI W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR Sbjct: 282 YAGYFLIVSDFICWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDR 341 Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472 +SMPDFDIDFCQ++RD VI YV+ KYG VA IITFG LQAKA LRDVGR +QMPY QV Sbjct: 342 ISMPDFDIDFCQEKRDYVIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQV 399 Query: 473 DRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 DR+CK+IP++P PV+ +AI D ++ + D +V +LLEIS KLEGLYRH S HAAG Sbjct: 400 DRICKMIPHNPVKPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAG 459 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 IVI DR L +L+P+Y D S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ + + + Sbjct: 460 IVICDRELEELLPLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNR 519 Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 G VD+S IP +D +TY +L+ ++G+FQLESSGMR+ + ++PD I DIIAL+SLYR Sbjct: 520 GGHSVDISRIPLNDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYR 579 Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PGP+DNI +Y RK+G EK IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD Sbjct: 580 PGPMDNISIYIARKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEAD 639 Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771 +LRRAMGKKIKEEMD Q+ FI+GA NGI + A IF+L+AKFA YGFNKSHAAAYA+ Sbjct: 640 LLRRAMGKKIKEEMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYAL 699 Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831 ISYQTA++K +Y +EF ASM L++ + +K++ C A+ I+I+PP +N+ V F + Sbjct: 700 ISYQTAYLKANYTLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIE 759 Query: 832 D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890 + I Y+L A+K VG +A+ I++ A + + DF RV +K +++R+LES++ AG Sbjct: 760 GASSIRYALGALKNVGQHSAKEIVDDVA---YKDIWDFIDRVSTKCVHKRILESIIKAGV 816 Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950 LD +R QL +S+ ++ + N ++F + L + Sbjct: 817 LDSIHSNRKQLFESVFLFLDIIEYNKYNANFNQFSLFND-----KNHYKLSETDDWTKEE 871 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKT 1009 + NE +GFY + HP++ YK +L K+ I + ++ + ++ + + + T Sbjct: 872 KLNNEFSSIGFYLNHHPMENYKYLLDKLNIGFIHYDDKSSYNN---VIVGIISNVKVRST 928 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 K + VT S+P +E F+ Sbjct: 929 NK-DKFAVVTLSDPFNIHEIVFY 950 >gi|207724510|ref|YP_002254907.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] gi|206589731|emb|CAQ36692.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum MolK2] Length = 1081 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 264/1073 (24%), Positives = 433/1073 (40%), Gaps = 111/1073 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA + ++ + A A+A+TD ++ + A AG++ Sbjct: 18 PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + +VLL +GY L E +++ L K Sbjct: 78 LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125 Query: 129 VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183 R+ L +GL L G + + Q + L +++FGDRL Sbjct: 126 YRLLADDLAA-PADGLAHLRGMPHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + L DR+R V ++ ++PLVAT + S + HDVL A+ S +++ Sbjct: 183 LELPLRHADDRHR-GTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ F L +VE+A C F L P + E Sbjct: 242 GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG 301 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 L + +AG R + R ++ EL +IA +++ +FL V Sbjct: 302 ----LTPAAYLHAEVMAGAARRYGK------AIPAKVRAQIAEELALIAELRYEPFFLTV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +++A+ +I GRGS A S Y L IT++DP + LF RFL+ R PD D+ Sbjct: 352 YDVVRFARSRDIL-CQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDV 410 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR+EVI+Y+ KYG R A + + ++ALRDVGRAL + ++++ K Sbjct: 411 DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 A A + + P V R + +L G RH S H G VI LS Sbjct: 471 WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593 +LVP+ D V Q++ +E L+K D L L LT ++++LD A+ G Sbjct: 527 RLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586 Query: 594 VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 L++ D +TY +++ T+G+FQ+ES + L ++P D++ V++ R Sbjct: 587 ASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646 Query: 652 PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGPI +V+ + + + P + +L+ T GV I+QEQVM+IA G Sbjct: 647 PGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706 Query: 705 YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 ++ EAD LRR M K+ + Q+ + + FA+YGF Sbjct: 707 FTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA +A ++Y ++++K H P F AA + + + Q+AR+ ++++P V Sbjct: 767 ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826 Query: 823 TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 D + + I L+ I+G+ A I+ A A PF S+ED R Sbjct: 827 VSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRA-- 884 Query: 875 KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920 ALD R Q L +Q+ Q R Sbjct: 885 ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQ 929 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + + + LG HPL + +P L +M Sbjct: 930 AR-------------PVEAPLALPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G R +V +Q+ T KG+ +V+ + +P Sbjct: 977 VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027 >gi|331699065|ref|YP_004335304.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190] gi|326953754|gb|AEA27451.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190] Length = 1142 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 275/1070 (25%), Positives = 454/1070 (42%), Gaps = 94/1070 (8%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++++ A A+A+TD + ++ + F++ A G+ I Sbjct: 64 YAELHCHSNFSFLDGASHPEELVEQAARLGLDALALTDHDGMYGVVRFAEAAAELGVATI 123 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P P ++LL +GY+ L ++S L + K Sbjct: 124 FGAELSLGLS-----APQNGVPDPEGSHLLLLARDPDGYRALCRVISAAQLRGREKGRPV 178 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 + + E ++ LTG G + +A AE+ L + FG + + V L Sbjct: 179 YRVDEIVEQTAGHVVALTGCRKGAVRQALAAGGPVAAEEALGWLVERFGREGVAVELTHQ 238 Query: 190 -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D R + LA LP VAT + + Y + AV + + D Sbjct: 239 ALPGDTERNDALAALAARAGLPTVATTGAHYAEPGRYPLAAAMAAVRSRRSLDEADGWLP 298 Query: 249 T--PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 P A+ + R C+F + + AP LP F + D Sbjct: 299 PAGTARLRSGAEMAARFEDRYPGAVARAAALGRECAFTIDLVAPDLPPFEVPDGRD---- 354 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + L + G R + + ++ E+ +I KF GYFLIV D +++ Sbjct: 355 EASLLWERVRKGAMCRYG-----SQAENPEAAETIEREMEIIVAKKFPGYFLIVHDIVEF 409 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++N+I GRGS A S +AL IT++D + LLFERFL+P R PD D+D R Sbjct: 410 CRRNDIL-CQGRGSAANSAVCFALGITNVDAVACGLLFERFLSPARDGYPDIDLDIESGR 468 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+YV +YG AQ+ + + ++A+RD+ RAL Q D K I Sbjct: 469 REEVIQYVYGRYGRGCAAQVANVITYRPRSAVRDMARALGFSPGQQDAWSKQIERWHGIG 528 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S + + +L ++++L G RH H+ G+VI DRP+S++VP+ Sbjct: 529 GSDGP----------PVPEGMPPAVLALAEQLLGFPRHLGIHSGGMVICDRPVSEVVPVE 578 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 + V Q++ AGL+KFD LGL LT L +D +A +V+L + D Sbjct: 579 WARMEERTVVQWDKDDCAAAGLVKFDLLGLGMLTALHTMIDLVAAHHGLRVELYELQPTD 638 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 E Y +L ++G+FQ+ES L ++P+ D++ V+L RPGPI ++ Y Sbjct: 639 PEVYAMLQRADSVGVFQVESRAQMATLPRLKPERFYDLVVEVALIRPGPIQGGSVHPYIR 698 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R+ E+ HPL+ L +T GV ++QEQ+MQ+A ++G+S ++AD LRRAM K+ Sbjct: 699 RRRDLEEWHHDHPLLAGALDKTLGVPLFQEQLMQVAVDVAGFSAADADELRRAMGSKRST 758 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E+M++ + RF G + NGI+ +A IF + FA++GF +SH+ ++A + YQ+AW K + Sbjct: 759 EKMERLRGRFYDGMAANGITGEVAEGIFAKMLAFANFGFPESHSISFASLVYQSAWFKRY 818 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835 YP F AA + + + DAR+ + + P V + + + I Sbjct: 819 YPAAFCAALLNSQPMGFYSPQSLVADARRHGVLVRGPDVCEGGAEATLEPDPRSEGGVAI 878 Query: 836 YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894 L ++ VG A I + L D RV +L E+L AGA CF Sbjct: 879 RLGLGEVRSVGIEKAEEIEAERVRGGRYRDLADLARRV---RLTAPQAEALATAGAFGCF 935 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954 G R L + + + E++ G + + Sbjct: 936 GIDRRSALWAAGVV----------AGVRPEHLPGAAVG-----LEAPALPGMTDVELTVS 980 Query: 955 EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--------------------- 993 + G HPL +P L ++G R Sbjct: 981 DVWATGVSPDSHPLQHLRPRLDELGAVPVARLDEVGRRAMTGTAHRMGRRGPQEVDALVE 1040 Query: 994 ------------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + + +V +Q+ T G + ++ + Sbjct: 1041 ALDPYDPDVRPPRVLVGGLVTHRQRPATAGG--VTFINLEDETGMLNVTC 1088 >gi|257463849|ref|ZP_05628236.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061383|ref|ZP_07925868.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313687059|gb|EFS23894.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 857 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 317/847 (37%), Positives = 505/847 (59%), Gaps = 29/847 (3%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 FVHL +H+ YSLL+G + + + + A + AIAITD N+F ALEF QKA G++ Sbjct: 3 DFVHLHLHTEYSLLDGVGKIEDYMKRAKALRMKAIAITDHGNMFGALEFYQKAQKYGLKA 62 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ + + ++LL EGYQ L+ L S YL + Sbjct: 63 IIGVEVYLS-------EFPLEEKKGRNFHLILLAENYEGYQNLMRLSSLAYL-EGFYYKP 114 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187 RI L++ ++G++ L+ +G I + + E + ++ +FG + Y+ +Q Sbjct: 115 RIDKELLRKY-SKGILALSACLNGEIASYILEGAEESKIEACIREYQDIFGKENFYLEVQ 173 Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 H ++ + L ++PLVATN++ ++++ ++ DV++ + + +S + R Sbjct: 174 AHEEKEQRQVNEALYALGKKLQIPLVATNDTHYVNKGEHLLQDVILCIQTGSHISDEKRM 233 Query: 247 RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R+ + EA++N+VEIA+RC + +H P + E Sbjct: 234 RIEMQDLYLKSYEEMYAMLGEQYAEAIQNSVEIAKRCQLWIPMHEFQFPDYTLPEG---I 290 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 E L+ GL R +G + +R ++EL++I +M ++GYF++V DFI Sbjct: 291 ASLEEYLKKLTYEGLAKRYPRGLD------EAIVERAEYELSIINKMGYAGYFVVVWDFI 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 +A+K IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ Sbjct: 345 AFARKKKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR E+I YV KYG ++VAQI TFG+L+A+AA+RDVGR +++ S++D+ K IP + Sbjct: 405 ERRQEIIDYVVQKYGQDKVAQISTFGTLKARAAIRDVGRVMEVELSKIDKAAKCIPMFAS 464 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 + + ++ + D + ++ + ++E RH STHAAG++I + L++ VP Sbjct: 465 ---LREVLEENIDLKTMYQQDVELKNVINTAIRIENKVRHISTHAAGVLITKKSLTESVP 521 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPF 603 +Y D ++ + TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ + K L+ I Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTHKKIVLAEISL 581 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661 D + Y +L+ + G+FQ+ES G+R L+ ++P+ DIIAL+SLYRPGP+ + + + Sbjct: 582 QDEKVYDMLSKGDSFGVFQMESRGLRSILKRLKPNSFGDIIALLSLYRPGPLGSGMVDDF 641 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 RK+GK+ IV H + +L+ET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK Sbjct: 642 IERKHGKKAIVYPHVSLQEVLEETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 E M + + +FI + K G + A IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K+ Sbjct: 702 VEIMHENRSKFIERSIKKGYEREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYFKS 761 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841 HYP F AA ++ E+ +++KI + DA+ ++I P V P F V +++I ++L+A Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIQTPDVQFPSSRFVVKEDKILFALSA 821 Query: 842 IKGVGTT 848 IK VGT Sbjct: 822 IKNVGTG 828 >gi|295395748|ref|ZP_06805937.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294971409|gb|EFG47295.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 1032 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 266/1034 (25%), Positives = 423/1034 (40%), Gaps = 65/1034 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA ++ A A+A+TD N L+ A+ F+Q+A G+ + Sbjct: 2 YAELHAHSNFSFLDGASDPEELVHAAHAAGLSALALTDHNGLYGAVRFAQEAQRVGMPTV 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L +D+ + P +++L + +GY++L +S+ Y K Sbjct: 62 FGAELSLDLAHKIP-----GQKDPQATHLLVLARSVDGYRQLSRAISQGY-EHGEKNRPI 115 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190 + L L + + +LTG GP+ L +LF DR+ V L R Sbjct: 116 LHLEELAALDPD-WYILTGCRKGPLIPHL--GDPDGGVSALRGLTELFPDRVVVELTRFG 172 Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 D R + LA LP VATN + Y V A+ + + Sbjct: 173 HPTDDARIEHLTHLATRASLPTVATNAVHYAYRSGYRGAHVRAAIRSHASLDELAGWLPA 232 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + VE A R + + ++ + Sbjct: 233 DATAYVRTPHDMRER-----FGPGPVETAHRIGQECAFELSAAQVGLPQAPVPPGRDADE 287 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 LR AG R +++D EL I M F+GYFLIV D ++ Sbjct: 288 HLRELVYAGARRRYGD-----RSEHPRAWEQIDSELATITSMGFAGYFLIVEDIARFCHT 342 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 N I GRGS A S + L IT +D ++F LLF+RFL+P R PD DID RR+E Sbjct: 343 NGIY-CQGRGSAANSAVCFVLGITAVDAVKFQLLFDRFLSPQRAGYPDIDIDIESGRREE 401 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YV YG R AQ+ + + K+A+RD A Q D K P + Sbjct: 402 VIQYVYRTYGRTRAAQVANVITYRTKSAVRDAASAFGYSPGQQDAFAKTTHRGALSPDT- 460 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +LE ++ L RH H+ G+++ DRP+ LVP+ Sbjct: 461 ------------DEPPHVPAPVLEAARDLHDSPRHLGIHSGGMILTDRPIYDLVPIEPAA 508 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 V Q++ L+KFD LGL L L+ + + + + Y Sbjct: 509 MEGRTVIQWDKDDSAAMNLVKFDLLGLGMLEALRHMNELVKKHTGHAVDRGNIPQEDGVY 568 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNG 667 +L +G+FQ+ES L M+P D++ ++L RPGPI ++ Y R+ G Sbjct: 569 DMLCRADAVGVFQVESRAQLSTLPRMRPRNFYDLVVEIALIRPGPIQGESVHPYLRRRQG 628 Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMD 726 E + HP + L +T GV ++QEQ+MQIA ++G+S ++AD LRRAM ++ M Sbjct: 629 VEPVTYAHPALKNSLGKTLGVPLFQEQLMQIAIDVAGFSGADADELRRAMGARRSARTMA 688 Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786 +ERF G S G+ T+A IF +A FADYGF +SHA ++A + Y++AW K + Sbjct: 689 ALEERFYQGCSARGVEPTVAREIFGKIAAFADYGFPESHALSFANLVYESAWFKYRHHAA 748 Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-------KVGDNRIYYSL 839 F AA + + + DAR+ + I +N VG I L Sbjct: 749 FTAALLRSQPMGFYSPQSLIADARRHGVNIRAVDINLSHEHSDLEPDPQSVGGFAIRLGL 808 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++KG+ A ++ +P+ S+ED + + LE+L AGA + FG R Sbjct: 809 TSVKGISAEVATQVVTHRT-QPYTSIEDLACKT---GIPSDALEALATAGAYESFGVDRR 864 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 Q L ++ + + S + + E Sbjct: 865 QALWIAGSL----------AGAGPDTLPGT-----SAVMEAPALPLMTEFDTTLAELFST 909 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 G +G+P + + L G+ +++ G I +A +V +Q+ KT G + + Sbjct: 910 GMTVNGYPTEHLRAALNARGLASTRDAMNAQAGARITVAGIVTHRQRPKTTTG--VTFFN 967 Query: 1020 FSEPAKEYEANFFP 1033 + P Sbjct: 968 IEDEFGMLNVVCSP 981 >gi|167585392|ref|ZP_02377780.1| error-prone DNA polymerase [Burkholderia ubonensis Bu] Length = 1067 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 273/1057 (25%), Positives = 450/1057 (42%), Gaps = 68/1057 (6%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + P +V L S++S L GA ++++ IAITD +L A Sbjct: 1 MAAEFKVLPDYVELFCRSNFSFLHGASHAEELVERAVELGYRGIAITDECSLAGAPRMHV 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A A G+ I+G ++ D + G P P +VLL EGY L EL+S Sbjct: 61 AAKAKGLPLIVGAYFEVTPDD----VSPGHDPGPGAFGLVLLAQNREGYGNLSELISWRR 116 Query: 121 LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 + K + R+ L E L + + + + V + ++ F+ F Sbjct: 117 MAS-PKGTYRLTARMLSRPPEEFAHLRGMPDCFAILVPAY--PVRADVLDAQVAWFRATF 173 Query: 179 GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+R + L Q R D + ++ E+ +VA + D + A+ Sbjct: 174 GERARLGLVQLQRALDGAQREEIRMAGARREVRVVALGDVTMHRRSCKRLQDTMTAIRLG 233 Query: 238 TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 + +L+ R ++ +FS A T I C F L P I Sbjct: 234 MPVSECGYALAPNAEQHLRWRRQIAQLFSPDEIA--QTCAILDACHFELDSLRYEYPDEI 291 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + + L + AG R QG + +++ EL++IAR+ + + Sbjct: 292 VPKG----HTPTSYLEQETRAGAAERYPQGV------PEKVEKQIRHELDLIARLSYEPF 341 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL V D +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ +R P Sbjct: 342 FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISAERGEPP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF RR+EVI+++ KYG +R A + + + LR+ G+AL + +DR+ Sbjct: 401 DIDVDFEHQRREEVIQHIYRKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLIDRVA 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K LQ A P + +++ +L RH S H+ G VI Sbjct: 461 KGHRWFDGSRDLLQQFAAV----GLDPDTPLIRAWADLAARLLNFPRHLSQHSGGFVISR 516 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593 L++LVP+ V Q++ +E GL+K D L L L+ L ++ D Sbjct: 517 GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPP 576 Query: 594 ----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649 L IP DD TY ++ T+G+FQ+ES L ++P D++ V++ Sbjct: 577 EPDGKPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRTYYDLVIEVAI 636 Query: 650 YRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707 RPGPI + Y R+ G EK+ + P L+ TQGV I+QEQVMQ+A + +G++ Sbjct: 637 VRPGPIQGGAVHPYLKRRQGLEKVSYPKEDLKPALERTQGVPIFQEQVMQVAMIAAGFTP 696 Query: 708 SEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766 EAD LRRAM K ++K + + G + A IFE + F DYGF +SHA Sbjct: 697 GEADELRRAMAAWKRKGNLEKYHRKIVDGMRERDYPPEFAEQIFEQIKGFGDYGFPESHA 756 Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826 A++A ++Y ++W+K H P FLAA + + + QDA++ +Q++P Sbjct: 757 ASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDATKSGW 816 Query: 827 DFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876 + + + L+ ++G+G AR I A A PF++++ R + Sbjct: 817 EASLEALPGQPRPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFENVDALARRA---Q 873 Query: 877 LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936 L RR LE+L A AL R L + ++ A D Sbjct: 874 LERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---ID 918 Query: 937 KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996 + + + + + G + HP+ + +P LR+ + E G R Sbjct: 919 EPEMPALGAPSEADDVLADYHTTGLTLNRHPVALLRPALRERRLLSAAELRDRPDGRLAR 978 Query: 997 LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V ++Q T KG + ++T + P Sbjct: 979 ACGLVTARQMPGTAKG--VMFMTLEDETGCVNLIVRP 1013 >gi|289208277|ref|YP_003460343.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix] gi|288943908|gb|ADC71607.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 1044 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 262/1050 (24%), Positives = 445/1050 (42%), Gaps = 77/1050 (7%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + + P + L S++S L GA ++++ A A+A+TD +L + Sbjct: 1 MDPTTPEPPEYAELMAVSNFSFLRGASHPEELVERARALGYRALALTDIASLAGVVRAHA 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G+ I+G + P++ LLV A GY L L+++ Sbjct: 61 AAKECGLHLILGATFQLADG----------------PALTLLVRNAAGYAALCRLITQAR 104 Query: 121 --LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 R L L G +L P + A A + L + Sbjct: 105 GAADKGHYHLTRADLDVLPAEARAGWHVLLRIEPEPAEPALA-----EAVRWLAGWAT-- 157 Query: 179 GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 + ++ + Q D ++ QLA LP+VA + S DVL A+ Sbjct: 158 PGQAHLAVSQLRTPEDATLATRARQLAEATRLPIVACGDVHMHSRGRRALQDVLTALRQR 217 Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297 T V++ R + ++ L +V IAR C F L P Sbjct: 218 TTVAEAAPARFPNGERCLRPRDDLATL-YPAPWLAASVRIARDCDFSLDAVTYRYPTDPL 276 Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357 LR + + G R G ++++ EL +IA++ + YF Sbjct: 277 PR----DTSPAAYLREETLKGARGRWPDG------IPPKVTEQIERELGIIAQLGYEPYF 326 Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417 L V D +++A+ I GRGS A S YAL IT +DP R S+LFERF++ +R PD Sbjct: 327 LTVYDIVRFARGRGIL-CQGRGSAANSAVCYALGITAVDPSRSSMLFERFISAERGEPPD 385 Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR-LC 476 D+DF +RR+EVI+Y+ +YG ER A T + ++ALRDVGRAL + +++D Sbjct: 386 IDVDFEHERREEVIQYIYQRYGRERAALACTVIRYRRRSALRDVGRALGISRARLDALTA 445 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KLEGLYRHASTHAAGIVI 534 L D P R RE L + +L G RH S H G VI Sbjct: 446 NLAWWDDGIPA--------ERLREVGLDPDGALARQWQALTAELLGFPRHLSQHTGGFVI 497 Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593 + L +LVP+ + V Q++ ++ GL+K D L L L+ ++++L+ +AQ RG Sbjct: 498 AEGRLDELVPIENAAMPERSVIQWDKDDLDAVGLLKIDVLALGMLSCVRRALELMAQHRG 557 Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653 L+ +P +D Y +L TLGIFQ+ES L ++P D++ +++ RPG Sbjct: 558 RDWGLADVPAEDPAVYRMLQKADTLGIFQIESRAQMSMLPRLKPANFYDLVIEIAIVRPG 617 Query: 654 PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 PI + Y R+ E++ + + +L T GV I+QEQV+++A + +G+S EAD Sbjct: 618 PIQGEMVHPYLKRRAHPERVSYPNAEVKRVLGRTLGVPIFQEQVIELAMVAAGFSAGEAD 677 Query: 712 VLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 LRRA+G + + +ER + G + G + A +++ + F +YGF +SH+A++A Sbjct: 678 GLRRAIGAWRRTGQLARYRERLMDGMRQRGYPEKFAEQLYKQILGFGEYGFPESHSASFA 737 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 +I++ ++W+K H P F A + + + DAR+ +++ P V D V Sbjct: 738 LITWVSSWLKCHEPAIFACALLNSQPMGFYAPAQIVADARRHGVEVRPVDVRCSDWDCTV 797 Query: 831 GD------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 + L + G+ A ++ A A++PF + D +R L R Sbjct: 798 EPVAGSDALALRLGLNRVGGLAQAVAERVVAARAERPFADVPDLVARA---ALTRAQANR 854 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKF 943 L A AL +R Q + + +++ +FA + + Sbjct: 855 LARADALKGLAGNRHQARWATEAVEE------------PLPLFADAPAETVREADVTPLL 902 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 ++ + G HPL + +P L + + + R A +V++ Sbjct: 903 PGPDAVDDLVQDYATQGLSLGPHPLALMRPFLEQRRLPTAARLLERPGHPGARYAGLVIT 962 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ + G+ ++T + + +P Sbjct: 963 RQRPGSAHGT--VFLTLEDESGTLNLIVWP 990 >gi|209547187|ref|YP_002279105.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538431|gb|ACI58365.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1087 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 272/1043 (26%), Positives = 455/1043 (43%), Gaps = 80/1043 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L GA S + A+ I D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAEELFATAKLMGIEALGIVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ S+++ + Y RL L++ K Sbjct: 62 VVGCRLDLADGM----------------SMLVYPTDRAAYSRLTRLLTLGKGRGG-KAKC 104 Query: 130 RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 + L + EGLI +L + + +L ++FGDR YV+L Sbjct: 105 ILQLDDVALY-AEGLIGVLVPDMA-----------DETCAVQLRKMAEIFGDRAYVSLCL 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246 R R D+ R ++ LA H + V TN+ LF + DV+ + T + Sbjct: 153 RRRPNDQLRLHELSNLAVKHRVKTVITNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFER 212 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D +LK EM +F PEAL T++I RC F L+ P Q+ Sbjct: 213 ERHADRFLKPPEEMARLFPRYPEALARTMDIVERCRFSLEELVYQYPEEALIPGMTAQES 272 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ G+ R +G A + + EL +I MK++ YFL V +++ Sbjct: 273 LEHY----TWEGVTTRYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +R Sbjct: 323 ARAQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+++ YGH++ A T +AK A+RDVG+AL +P ++ L I + Sbjct: 382 REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLINSLSSGIWSW---- 437 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S + R D + L ++Q+L G RH H G V+ L LVP+ Sbjct: 438 -SETVGENQVRALGLNPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 D V +++ +E ++K D L L LT + K+ + + + L+ IP +D Sbjct: 497 PAAMVDRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLYLATIPQED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 557 PATYAMIRKADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ +SG K+G S A F L F YGF +SHAA++A+I+Y + ++K H Sbjct: 677 GGVSRFKDKLVSGMIKSGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYVKCH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIY 836 +P F AA + + + DAR+ ++++ P +N D + + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAPAQIVSDARKHDVEVCPICINRSRWDCTLEEVEGTGRHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895 + ++G+ T A I+ A AD+PF S++D R + L L A A Sbjct: 797 LGMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAFLPSLR 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSV 950 R L ++ ++ +F + + + Sbjct: 854 LERRDALWAIKALRDE-----------PLPLFTSAAEREARAIAEQQEPEVELRQMTDGH 902 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + +G HPL + L K I +++ G + A +V+ +Q+ + Sbjct: 903 NVVEDYSHIGLTLREHPLRFLRADLTKRQIVTCAKAMTARDGQWLMAAGLVLVRQRPGSA 962 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG + ++T + +P Sbjct: 963 KG--VMFITIEDETGIANIVVWP 983 >gi|315499387|ref|YP_004088190.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48] gi|315417399|gb|ADU14039.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48] Length = 1075 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 259/1042 (24%), Positives = 454/1042 (43%), Gaps = 76/1042 (7%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 P +V LQ S +S L+G S + + + A A+AI D N L + A A G+ Sbjct: 2 PPPYVELQCASYFSFLQGCSSPDELFVRAQALGLEALAIADRNTLAGMVRAHVAAKATGV 61 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127 + I+GC LD+ S+++ + Y RL L++ K Sbjct: 62 RLIVGCHLDLTDG----------------ASLLVYPTDRTAYARLSRLLTVGKARGG-KG 104 Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187 + +++ +G I + +V +RL FK +F +R ++ L Sbjct: 105 RCDLTWQDVEDFN-----------AGLIGIFIPEEADEVCAQRLRRFKTIFAERAHMALT 153 Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDR 245 R R D R + LA +P V TN+ L+ E + HDV+ + H+ + D Sbjct: 154 LRRRQGDHLRLHDLSNLAARVRVPTVITNDVLYHVHERDQLHDVVTCIRHNCTIDTMGDL 213 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 D YLK EM +F AL + EIA +C F L P Sbjct: 214 RHCYADRYLKTPEEMYRLFPGYEGALRRSAEIAEQCRFSLDELKYQYPEEKLLPG----L 269 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L+ G + R +G Q L EL +I ++ ++ YFL V + Sbjct: 270 SAIDALKKLTWEGAKRRYPEGV------PQKVIDLLRHELTLIEKLNYAPYFLTVNAIVN 323 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ +I GRGS A S + L IT +DP R LLFERF++ +R PD D+DF Sbjct: 324 FARSQDIL-CQGRGSAANSCVCFVLGITSVDPDRNDLLFERFISEERGEPPDIDVDFEHQ 382 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV+++V YG A + + A+R V + + P + + K + + Sbjct: 383 RREEVLQWVYETYGRSHAALTAVVTRFRTRGAIRAVLKVMGYPEDTIKLISKQVTHWHRG 442 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 ++L ++ L D + +++ L + RH S H G V+ L +LVP+ Sbjct: 443 GMTL----AEAEGLGLNLNDRRLKLAIDLHLLLMNVPRHLSQHPGGFVLTHDRLDELVPI 498 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604 V +++ I+ +K D LGL ++ +++SLD LA+ +G+++DL+ IP + Sbjct: 499 EPARMKARQVIEWDKDDIDVLAFMKVDCLGLGMMSCMKRSLDLLAEVKGIELDLATIPAE 558 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D TY ++ T+G+FQ+ES + L +P D++ V++ RPGPI +V+ Sbjct: 559 DPRTYAMIRKADTVGVFQIESRAQQAMLPRTKPRTFYDLVVQVAIVRPGPIQGGMVHPYL 618 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722 R+ G E++ ++ +L +T GV ++QEQ M + +G+S AD++RRAM Sbjct: 619 RRREGTEEVTYPSKELEAILSKTLGVPLFQEQAMSVVIKAAGFSPGRADMVRRAMATFKH 678 Query: 723 E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + K + + G KNG ++ A IF L F YGF +SHA ++A+I+Y ++WMK Sbjct: 679 TGGVSKFHDEIVQGMLKNGYTQDYAEQIFSQLEGFGSYGFPESHAYSFALIAYASSWMKC 738 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RI 835 H+P F AA + + + ++A++ +++ P VN D + + + Sbjct: 739 HHPDVFCAALLNSQPMGFYAPAQLVRNAQEHGVEVRPVCVNASHWDCTLEETNRPGRYAV 798 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894 +KG+ + ++ D PF S+ D R + R L A A Sbjct: 799 RLGFRLVKGLKSADIAKLILHRGDYPFTSISDLWKRARTPVATLRQ---LAKADAFSPAL 855 Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK----FSVENSSV 950 G +R L ++ ++ +F H + + + + Sbjct: 856 GLNRRDALFAIRALRDD-----------PLPLFDHLEAIAGGTHEMPEPQVSLKPMTAGA 904 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + LG HP+ + LR+ G+ +++A+ G N+ +A MV+ +Q+ + Sbjct: 905 VVVEDYNHLGLTLGTHPVSFLREELRQRGLMPCADAMASKDGRNVSVAGMVLVRQKPGSA 964 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G + ++T + ++ + Sbjct: 965 NG--VMFMTLEDETRDANVVVW 984 >gi|323488459|ref|ZP_08093706.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2] gi|323397966|gb|EGA90765.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2] Length = 1020 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 352/1022 (34%), Positives = 568/1022 (55%), Gaps = 49/1022 (4%) Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGC 73 + +S LL+ + L+ + + ++AI N L+ L F + AGI ++G Sbjct: 7 HISTSADLLKSTVRLDELFPFLKEQGASSVAI--VNTKLYGMLPFWEACRRAGIHGVVGL 64 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133 I+ ++ S+VL + +GY L+++ S + D+ I Sbjct: 65 STFIEYEE-------------QHYSVVLYAQSNKGYDNLLKISSALATRDKE----AIPE 107 Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193 WL+ EGLI + + + S + K LFG + +++R G Sbjct: 108 QWLKAY-KEGLICVIPNKA----EWLLTDRS----LVIGYIKSLFGQAAFGSIERPGGVV 158 Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH- 252 ES ++L E+P++AT+ ++ ++D A++V A+ ++ +R + Sbjct: 159 SAYESDFIELCAQLEIPIMATHEIRYMHQQDAFAYEVASAIGQGLKMNDPERQTPEHTNA 218 Query: 253 YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312 Y+ ++ E F+D E ++ T + + C + ++ +LP + E D + + Sbjct: 219 YVPSQQEFFEWFADRNEWVQQTANMLKSCRVTIPMNQQLLPVYPLSEQVDK----ASYIA 274 Query: 313 NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372 GL+ R+ + ++Y++RL++EL+VIA+M F YFLIVADF+++AK +I Sbjct: 275 QLCKTGLKERVPRF-------PENYQERLNYELSVIAKMGFIDYFLIVADFMKYAKDQDI 327 Query: 373 PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432 GPGRGS A S+ AY+L IT++DP+ LLFERFLNP+R+++PD DIDF RR EV+ Sbjct: 328 MTGPGRGSSASSLVAYSLKITNVDPIEHGLLFERFLNPERVTLPDIDIDFADHRRHEVVD 387 Query: 433 YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492 YV KYG R AQIITFG+L AKA RD R +++ + KLI N P + A+ Sbjct: 388 YVAKKYGAVRTAQIITFGTLSAKAVARDTARVFGFEAEELEAISKLISNRPGTTL-RSAL 446 Query: 493 ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 + S+F + + + + KLEGL RHASTHAAG+++ PL VP+ + Sbjct: 447 KESSKFNDWIIEREERKSWFKTALKLEGLPRHASTHAAGVILSPTPLVNHVPIEKG-HEG 505 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611 + +TQ+ M+ +E GL+K DFLGL+ LT+L++ + + K++ S IP DD +T+ L Sbjct: 506 IYLTQWPMQELEAIGLLKMDFLGLRNLTILEQIRNLVYWGTKQKINYSDIPLDDEKTFKL 565 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671 L + T G+FQLES GMRQAL+ +QP DI+A+ +LYRPGP++ I +Y RK+G+E + Sbjct: 566 LASGDTTGVFQLESDGMRQALQQIQPTAFGDIVAVNALYRPGPMEFIPLYARRKHGQETV 625 Query: 672 VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731 IHP+++P+L ET GVI+YQEQ+M IA ++G+SL EAD+LRRA+ KK +E +D+++E Sbjct: 626 KYIHPILEPILSETYGVIVYQEQIMHIAAKMAGFSLGEADLLRRAVSKKKREILDEEREH 685 Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791 F+ GA+ G +K+ A +++L+ +FADYGF KSHA AY++ISYQ ++MK HYPV F + Sbjct: 686 FVLGATSKGFTKSEAAEVYDLIVRFADYGFPKSHAVAYSMISYQLSYMKAHYPVYFYTSL 745 Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851 +T N EK K+ Q+ ++ I I+PPSV F V D +I + L A+KGV TT + Sbjct: 746 LTNSAGNAEKTKQLLQEIKEKKIPILPPSVQKSRHTFSVEDGQIRFGLNAVKGVPGTTIK 805 Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911 ++ A + PF L + R+ + NR+ E L+ AGALD FGY R +L SLD+ K+ Sbjct: 806 ALLAAREEGPFTGLFNIAERISALHFNRKSFEPLIKAGALDEFGYDRGVILASLDSAIKH 865 Query: 912 AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971 A+ V+ N +F +F K K S +++ E E+ VLGFY S HP++ Sbjct: 866 AELVKPNDEPG---LFDDMGASFM-KPKYTKASEMPENLKLEFEKDVLGFYLSKHPIER- 920 Query: 972 KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 + R+ + + ++++ ++ ++ +T+KG + ++T + Sbjct: 921 EKEHRQKSYDALKSLKSKRDRESVKVLGVIEEIKRIRTKKGDAMAFLTLMDETGPASVTL 980 Query: 1032 FP 1033 FP Sbjct: 981 FP 982 >gi|296138661|ref|YP_003645904.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296026795|gb|ADG77565.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM 20162] Length = 1093 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 282/1032 (27%), Positives = 474/1032 (45%), Gaps = 60/1032 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L H+++S L+GA ++++ A A+A+TD N + + F++ A G+ + Sbjct: 58 YAELHAHTAFSFLDGAAQPEEMVEQAHALGLTALAVTDHNGFYGVVRFAEAALGLGVPTV 117 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + L+ + T P +++L EGY+RL ++ ++ K +R Sbjct: 118 FGAELSL-----LRDAERTGTADPDGEHLLVLARGQEGYRRLSRAMAEAHMEAGEKGKLR 172 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L E +LTG G + R A L FG DR+ + L H Sbjct: 173 FHPDRLAEWSEGHWHILTGCRKGAVRRGLDAAGPDGAAGALAHLLDRFGPDRVSMELTVH 232 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 D R + +A + VAT + F + L A+ + + D Sbjct: 233 GVPEDDERNHLLAGVAARMGVGTVATTGAHFARPDQRRLAATLAAIRARRSLDELDGWLP 292 Query: 249 TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 +L++ EM + + P A+ VE+A C+F L++ AP LP F E Sbjct: 293 AAGGAHLRSGDEMALLLPEHPGAIAGAVELAAECAFSLRLIAPNLPPFDVPAG----HTE 348 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 LR G R + + YRQ ++ ELNVI + F GYFLIV + + Sbjct: 349 ATWLRELTRRGALDRYG----PPESNPKAYRQ-IEHELNVIETLTFPGYFLIVHSIVSFC 403 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I GRGS A S +AL IT +DP+R LLFERFL P+R PD D+D DRR Sbjct: 404 RESDIL-CQGRGSAANSAVCFALGITAVDPVRNGLLFERFLAPERDGPPDIDVDIESDRR 462 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +E I++V YG AQ+ + + ++A+RD RAL Q D + Sbjct: 463 EEAIQFVYRTYGRAYAAQVANVITYRGRSAVRDTARALGYSQGQQDAWS--------KQI 514 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S +D + D +R+++++ ++ L RH H+ G+VI DRP++ + P Sbjct: 515 SSYGWRNDP------VPDGVPERVIDLATQIADLPRHLGIHSGGMVICDRPIADVCPTEW 568 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 D V Q++ AGL+KFD LGL L+ L + D L + ++VD + + D Sbjct: 569 ARMQDRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYAQDLLKEHKGIEVDFAQLDLTDD 628 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Y R Sbjct: 629 TVYAMLRRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYIRR 688 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E+ HP + L+ T GV ++QEQ+MQ+A ++ ++ +EAD LRRAM K+ E Sbjct: 689 RNGQEEPRVEHPSMWKTLERTLGVPLFQEQLMQLAVDVADFTPAEADQLRRAMGSKRSTE 748 Query: 724 EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M++ +ERF GA + +GI +A IFE LA FA++GF +SH+ ++A + + ++W K + Sbjct: 749 KMEQLRERFYRGAKQLHGIEGELADRIFEKLAAFANFGFPESHSQSFASLVFYSSWFKCY 808 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNRIYYSLA 840 +P F AA + + + DAR+ + + P +N P + + + LA Sbjct: 809 HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDLNISLPWANLENAGMEVRLGLA 868 Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 AI+ +G A I+ A + L D SRV+ L E+L +GALDCFG R Sbjct: 869 AIRTIGDELAERIVAEREAGGIYAGLTDLTSRVE---LTVAQAEALATSGALDCFGRDRR 925 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 Q L A + R ++ + + + + Sbjct: 926 QALWE-------AGAAARERPDR---LPGTATAGAP-----PTLPGMSETELAAADVWAT 970 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 +P + +P L ++G+ ++ ++ G+ + + V +Q+ T G + ++ Sbjct: 971 SVTVGKYPTEFLRPKLDELGVIPADQLLSLPDGDRVLVGGAVTHRQRPATAGG--VTFIN 1028 Query: 1020 FSEPAKEYEANF 1031 + Sbjct: 1029 LEDETGMVNVVC 1040 >gi|293376148|ref|ZP_06622394.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909] gi|292645221|gb|EFF63285.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909] Length = 1010 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 333/1024 (32%), Positives = 561/1024 (54%), Gaps = 56/1024 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFVHLQV S+YSLL ++ + ++D +Q +A+ + + SA++F ++P Sbjct: 2 SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 +IG +++ + V+L GYQ L+++ S + KQ Sbjct: 62 LIGMSVNVQGDSFIDEW-------------VILARNQCGYQGLLKIASFI-----AKQEG 103 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 + + + L+++T G G + + + ++ K LY+ L R Sbjct: 104 VVLYEQVLPFVQD-LVVITSGEHGMLCSGIEEYKEERLLQYYESYLKSIP-HLYIGLMRV 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249 ++ A P+VA N+ +L +ED + +L A+ + V ++ P V Sbjct: 162 NQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EELPLVD 219 Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 + Y K+ +M +F+D+P AL T +IA C + +H +LP++ E ++ Sbjct: 220 YERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEGV----SSDS 275 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L GLE R +Y RL +EL+VI +M FS YFLIV DF+++AK Sbjct: 276 YLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRYAKS 326 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF +RRDE Sbjct: 327 HDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNRRDE 386 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+YVQNKYG V QI TFG+ Q+++A RD+ R Q+ + ++++ I + Sbjct: 387 VIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS---TLK 443 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 + R+ P ++ + + ++K+EGL RH S HAAG++I D L+ + + Sbjct: 444 EIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI-MEG 502 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608 + + V+Q+ + +E GL+K DFLGLK L +LQ+ + + D++ IP+DD +T Sbjct: 503 PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYDDLKT 562 Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668 Y +++ T G+FQLES GMRQ L ++P+C+EDIIA +L+RPGP++ I ++ RK+ + Sbjct: 563 YEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAARKHHE 622 Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728 + I HP + +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE ++++ Sbjct: 623 QPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEILERE 682 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 ++ F+ A + G + IA ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP F+ Sbjct: 683 QKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYPSYFM 742 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848 +++ + + ++ ++A+Q +I ++PPS+N+ + +++ + I +SL IK +G Sbjct: 743 TVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKHIGMN 802 Query: 849 TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 AR I+ + S DF SR LN+R E L+ GA+D FGY+R L +L I Sbjct: 803 LARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHNLTAI 861 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 ++++ +F + K TL +S+ + + E+ +LGFY + HP+ Sbjct: 862 LDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLNSHPI 907 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 + + ++ G + + + I V ++ + +KG + ++ S+ Sbjct: 908 HLMRDQAKEKGWYFPSDLIHL-NVSTITCVGFVEKFREIRDKKGKLMAFMDISDENGTVS 966 Query: 1029 ANFF 1032 F Sbjct: 967 VTIF 970 >gi|222148691|ref|YP_002549648.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] gi|254777923|sp|B9JWL2|DNAE2_AGRVS RecName: Full=Error-prone DNA polymerase gi|221735677|gb|ACM36640.1| DNA polymerase III alpha chain [Agrobacterium vitis S4] Length = 1097 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 263/1042 (25%), Positives = 450/1042 (43%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L GA S + + + AI + D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SILVYPTDRTAYSRLARLITLGKGRGG-KDNC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + L + + G L +L + +L ++FGD Y++L R Sbjct: 105 ILMLDDIAQYGEGLLGILVPDLA-----------DDTCAVQLRKMAEVFGDLAYLSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ +A ++ V TN+ LF + D++ + ++T + Sbjct: 154 RRPNDQLRLHELSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F +AL T+EI RC F L+ P +K Sbjct: 214 RHADRYLKPPEEMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYPEEAI----VPRKTA 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L + + R QG Q + EL++I +MK++ YFL V +++A Sbjct: 270 QESLEHYVWQCVPDRYPQGL------PPKTLQIIRHELDLIHKMKYAPYFLTVFSIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L +T IDP +LLFERF++ +R PD D+DF +RR Sbjct: 324 RAKGIL-CQGRGSAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ YG E+ A T +AK A+RDVG+AL +P + L + + Sbjct: 383 EEVIQWIYKTYGKEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGMWSW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 SQETSDRNVRELNLNPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 D + +++ +E +K D L L LT + K + + DL+ I +D Sbjct: 498 STMEDRQIIEWDKDDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDDLDLAKIRQEDK 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 ATYEMICKADTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + KE + P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REKKEDVDYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + KE+ +SG KNG + A F L F YGF +SHAA++A+I+Y + ++K H+ Sbjct: 678 GVSRFKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVKCHF 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837 P F AA + + + DAR +++ P VN D + + + Sbjct: 738 PDVFCAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGY 896 + +KG+ I+ A + PFDS++D R + L L A A Sbjct: 798 GMRMVKGLVVADVARIVAARMNGPFDSVDDMWRR---SGVPAASLVELAHADAFQPSLKL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951 +R +L ++ ++ +FA I + Sbjct: 855 ARRDVLWAIKALRDE-----------PLPLFAAAAEREMKTIAEQNEPEVELRQMTKGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + +G HP+ + L K I EE++ G + A +V+ +Q+ + K Sbjct: 904 VVEDYGHIGLTLRDHPIAFLRTDLAKRNIVTCEEAMTARDGRWVITAGLVLVRQKPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGPANIVVWP 983 >gi|255039130|ref|YP_003089751.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] gi|254951886|gb|ACT96586.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053] Length = 1074 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 262/1036 (25%), Positives = 455/1036 (43%), Gaps = 74/1036 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV ++++ L G ++ + AIAITD N L + A + I Sbjct: 3 YTELQVTTNFTFLRGGSHPEELVGQAIELGYKAIAITDRNTLAGVVRAHAAAKGKDFRII 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 C+LD+ PS++ + Y L L++ L + K Sbjct: 63 PACRLDLLDG----------------PSLLAYPTHQAAYSHLSALLTEGNLRTE-KGKCD 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---VAEKRLLTFKKLFGDRLYVNLQ 187 + + + EG+ + A S E+ L +++ G LY+ Sbjct: 106 LYKADVYRY-AEGI------RFIAVPPAALNESFDFDPSFEQNLREYRRALGKSLYLGAI 158 Query: 188 R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245 R ++G D + ++ QL+ ++PLVATN+ + + + E DVL + + R Sbjct: 159 RSYQGDDMKKLYRLDQLSQHLDIPLVATNDVHYHNFQRRELQDVLTCIREKCTIYNAGFR 218 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + YLK +EM +F PEA+E T EIA C F L + P + E + Sbjct: 219 LHENAERYLKPAAEMQRLFMKFPEAIERTQEIADACQFSLSSLKYVYPEELTTEG----R 274 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 EL + G + R +G D ++ E + M ++ YFL V D ++ Sbjct: 275 TPMEELIHLTWLGAKKRFPKG------IRPDIHAKILHEFKFVEEMNYAAYFLTVYDIVR 328 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A + I GRGS A SV Y L IT +DP+ LLFERF++ R PD D+DF + Sbjct: 329 FANEQKIL-CQGRGSAANSVICYCLGITSVDPIEIDLLFERFISSSRNEPPDIDVDFEHE 387 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EV++Y+ NKYG +R + T + K A+RDV +A+ M + RL + Sbjct: 388 RREEVMQYIYNKYGRDRAGIVATVTQVHQKGAVRDVAKAMGMSMDAISRLSSSLWEFTDE 447 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + I + DP + ++L+++++ G R H G VI LS L P+ Sbjct: 448 WFDGKLITEH----GFNPNDPHLIKILDLTRQYMGFPRQLGQHTGGFVITQGKLSDLCPI 503 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD 604 + ++N I+ G +K D L L LT ++K+ D L Q +L+ IP D Sbjct: 504 LNARMENRTCIEWNKDDIDTLGFLKIDVLALGMLTCIRKAFDLLKQHYDIEHNLASIPPD 563 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662 D + Y ++ T+G+FQ+ES + L ++P C D++ V++ RPGPI +V+ Sbjct: 564 DQDVYDMICKADTIGVFQIESRAQQSMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYL 623 Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI- 721 R+N +E++V ++ +LK+T GV ++QE M+IA + +G++ +EAD LRR+M Sbjct: 624 RRRNDEEEVVYPKKELEDILKKTLGVPLFQEHAMKIAIVAAGFTATEADELRRSMATFKS 683 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 K ++ +++ ++G KNG K A IF+ L F YGF +SHAA++A++ Y ++W+K Sbjct: 684 KGIVNTLRDKLVNGMVKNGYEKDFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIKC 743 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836 H+P F AA + + + + DAR ++++ +N D + + + Sbjct: 744 HHPDVFAAALLNSQPMGFYRPAQIVIDARNHDVKVREIDINHSFWDNTLENIPGEQCALR 803 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 IKG+ + + A +PF + ++ LE L A A G+ Sbjct: 804 LGFRQIKGLREEEMQILTNART-QPFTHIHQLLE----AGISHTALEKLADADAFRSIGF 858 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 R Q + ++ +FA + + L + + ++ Sbjct: 859 DRRQAFWEASAL-----------ADRPMGLFAGQPSPREADVELPQ---MTLAEHVIHDY 904 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 HP+ + L +G + +++A +V+ +Q+ T G I Sbjct: 905 ATTSLSLKQHPVSFVREQLDALGAVPSKALELIPDSRIVKVAGLVLVRQRPGTASG--IC 962 Query: 1017 WVTFSEPAKEYEANFF 1032 ++T + F Sbjct: 963 FITVEDETGTANLVVF 978 >gi|116251876|ref|YP_767714.1| DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115256524|emb|CAK07609.1| putative DNA polymerase II subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 1086 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 266/1043 (25%), Positives = 451/1043 (43%), Gaps = 80/1043 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L GA S + A+ I D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRGASSAEELFATAKRLGIEALGIVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKSRGG-KANC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQ- 187 + L + +EGLI + + L ++FGD Y++L Sbjct: 105 ILHLDDVALY-SEGLIGI-----------LLPDLPDETCAIQLRKMAEVFGDLAYLSLCL 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 R R D+ R ++ LA H++ V TN+ LF + DV+ V + T + R Sbjct: 153 RRRPNDQMRLHEMSNLAVRHKVKTVVTNDVLFHDPSRRQLQDVVTCVRNRTTIDDVGFER 212 Query: 248 VTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + EM +FS PEAL T+EI RC F L+ P I Q Sbjct: 213 ERHADRYLKPATEMERLFSRFPEALTRTMEIVDRCRFSLEELTYQYPEEIVVPGKTAQAS 272 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E + R G A + + EL +I M+++ YFL V +++ Sbjct: 273 LEQY----VWECVPNRYPDGLPAH------VEKTIRHELALIEIMRYAPYFLTVFSIVRF 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S + L +T IDP LLFERF++ +R PD D+DF +R Sbjct: 323 ARSQGIL-CQGRGSAANSAVCFVLGVTSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+++ YG + A T + K A+RDVG+AL +P + L + Sbjct: 382 REEVIQWIYETYGRNKAALCATVTRYRTKGAIRDVGKALGLPEDLIKALSSGVWAW---- 437 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 -TEEVGEKQVRELNLNPDDRRLALTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605 D V +++ +E +K D L L LT + KS ++ V +DL+ IP ++ Sbjct: 497 PASMVDRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKSFAFLNQEKDVDLDLATIPQEE 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 +TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 557 AKTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ ++G +NG + A F L F YGF +SHAA++A+I+Y ++++K H Sbjct: 677 GGVSRFKDKLVNGMVRNGYTSEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIY 836 +P F AA + + + +DAR+ ++I P VN D + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEIRPVCVNQSRWDCTLEPVGDTDRHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895 + ++G+ T A I+ A AD+ FDS++D R + L L A A G Sbjct: 797 LGMRMVRGLATADAARIVAARADQAFDSVDDMWRR---SGVPAASLVELAEADAFHPSLG 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSV 950 R L ++ ++ +FA + + Sbjct: 854 LERRDALWAIKALRDE-----------PLPLFAAAAEREAKTIAEQQEPAVELRQMTQGH 902 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + G HP+ + L + I E+++ G + A +V+ +Q+ + Sbjct: 903 NVVLDYGHAGLTLREHPVSFLRRELAERRIVTCTEAMSARDGRWLMAAGLVLVRQRPGSA 962 Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033 KG + ++T + + +P Sbjct: 963 KG--VIFMTIEDESGVANVVIWP 983 >gi|260101642|ref|ZP_05751879.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus DSM 20075] gi|260084543|gb|EEW68663.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus helveticus DSM 20075] Length = 1041 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 331/1024 (32%), Positives = 537/1024 (52%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 12 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 72 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ + K+L D LY+ + + Sbjct: 122 LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 179 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 + V L+ +LPL+AT +S +L+ D L A+A + + Sbjct: 180 -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 239 HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 294 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL VI +M F YFLIV D I + + Sbjct: 295 YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 350 VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP Sbjct: 410 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 469 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A R A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 470 EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 528 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D +T Sbjct: 529 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RKNG+E Sbjct: 589 QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 648 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 649 AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP F Sbjct: 709 GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 769 AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 826 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + D I Sbjct: 827 AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + E++VLGF + PL Sbjct: 885 ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + + G + ++ +Q +T+ G + + +F++ + E E Sbjct: 935 AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991 Query: 1030 NFFP 1033 FP Sbjct: 992 VIFP 995 >gi|71151844|sp|Q8PN74|DNAE2_XANAC RecName: Full=Error-prone DNA polymerase Length = 1083 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 264/1047 (25%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S +S L GA S + + A+AITD +L + + + A G++ Sbjct: 46 PAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEASRATGVR 105 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + VLLV A GY +L L++ K + Sbjct: 106 LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 148 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + +Q + + + + + AE+ +++FG+R ++ ++ Sbjct: 149 YRLDRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 199 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D R + LA + +A+ + + D L A+ H T+ + Sbjct: 200 HREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + R+ L+ TVE+A+RC+F + + PR + E Sbjct: 259 LFRNGERHLRTRRALGNIYPDALLQATVELAQRCTFDISKISYTYPRELVPEG----HTP 314 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR AG+ R G A R+ ++ EL +IA K+ +FL V D +++A Sbjct: 315 TSYLRQLTEAGIRRRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ NI GRGS A S YAL IT ++P LL RFL+ R PD D+DF +RR Sbjct: 369 REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +KYG ER A T + K+A+RDV +A +P Q+ L Sbjct: 428 EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 Q I + LA+P ++++L +++ L RH S H G VI D PLS LVP+ Sbjct: 488 MDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 ++ + Q++ +E L+K D L L LT ++K+LD + RG ++ +P D Sbjct: 544 AAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRNYSIATLPGGDA 603 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 604 PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPIQGDMVHPYLRR 663 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723 + G+E++ P ++ +LK T GV ++QEQVM++ + YS EAD LRR+M + Sbjct: 664 RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 723 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +M++ + R G + + IFE + F YGF +SHAA++A + Y + W+K H Sbjct: 724 DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833 P F + + + QD + ++++P V D + Sbjct: 784 PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 843 Query: 834 --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + + G+ A+ I+ A + F + D C R L+ + +L Sbjct: 844 AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 900 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGAL +R ++ ++ + S + +F Sbjct: 901 AEAGALQGMVGNRNAARWAMAGVEARCPLL-----------------PGSPEERPVEFEA 943 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + R +G HP+ + +P +R+ I G E G+ + +A +V +Q Sbjct: 944 PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 1003 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T KG+ +VT + + Sbjct: 1004 RPATAKGT--IFVTLEDEQGMINVIVW 1028 >gi|227893479|ref|ZP_04011284.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227864704|gb|EEJ72125.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 1035 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 333/1024 (32%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + ++L A+ +TD N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKIVDLLKTAKEKGYQAVGLTDVNVTYGLVNFYELAKRAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 Q+ ++ G +++ GY L+ L S + L D G+ + Sbjct: 66 QVRLN----------GLIDSTQKYDLIVFAKNNAGYHNLLRLSSAINLLTDNGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L+ L + + L+++ + + F N Q+ + KKL + LY+ + Sbjct: 116 LTELTKYLDDLLVIVPANTHSELLNLFETNQ-QLGSDYIRDLKKLTSE-LYLGVYASNSS 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251 + Y V LA ELPLVAT + +L D L A+ + + Sbjct: 174 ESYV-DYVHALAKQFELPLVATEDCEYLRPRDQFLQKTLRAIRSGQKMQDTIPLAKQDGS 232 Query: 252 HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 H+L N EM+ + +A+ NT +IA C+ + P+LP++ + D E Sbjct: 233 HFLANAEEMLERYHRFNLDDAVNNTWKIAEECNAEVIFQKPVLPKYHQ----DKFATSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L + A GL+ R +G +Y++RL++EL VI +M F YFLIV D I + + Sbjct: 289 YLHHLAQTGLQARFGKG-----KVPAEYQKRLNYELRVINQMGFDNYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +YAL IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 344 VKITTGPGRGSACGSLVSYALRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWARAIPYSKDKMTLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A + R A P L + + +LEGL RH S HAAG+VI D ++ + + Sbjct: 464 RAYEESRELRLLVDATPENKLLFKTAMELEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L LD + Q+GV +D + IP +D T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRQQGVNIDPNKIPLNDQATL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RKNG+E Sbjct: 583 KLFQEGKTDAVFQFESGGIRQVLRKLHPDDFEDLVAVNALYRPGPMQNIDTFIARKNGQE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +++++ Sbjct: 643 PVKYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQER 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G K G K +A ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 703 SKFITGTVKKGHPKEVAERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + + + A++ +I I+ P +N +D+ + +N I L AIKG+ Sbjct: 763 AMLNSSTAVKAQ--GYIMQAQEADIHILAPDINRSHLDYSLENNDILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 A+ I E + SL DF R+D+K L +E+L+ AGA D +R +LL + I Sbjct: 821 AKEIAENKKQ--YKSLSDFLRRIDAKFLQVDAIEALIMAGAFDQIEDNRNELLANCKEII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ ++ + E E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGDAPLKPAEKPTNAEKAEMEEKVLGFATTTTPLV 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + + G ++ ++ +Q +T+ G + + TF++ + + E Sbjct: 929 AVQKYAKKFDARALNQFQINESGISV---GKLMKYKQIRTKNGKTMAFATFADSSSQQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 IIFP 989 >gi|21241953|ref|NP_641535.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|21107345|gb|AAM36071.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str. 306] Length = 1065 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 264/1047 (25%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S +S L GA S + + A+AITD +L + + + A G++ Sbjct: 28 PAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEASRATGVR 87 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + VLLV A GY +L L++ K + Sbjct: 88 LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 130 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + +Q + + + + + AE+ +++FG+R ++ ++ Sbjct: 131 YRLDRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D R + LA + +A+ + + D L A+ H T+ + Sbjct: 182 HREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + R+ L+ TVE+A+RC+F + + PR + E Sbjct: 241 LFRNGERHLRTRRALGNIYPDALLQATVELAQRCTFDISKISYTYPRELVPEG----HTP 296 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR AG+ R G A R+ ++ EL +IA K+ +FL V D +++A Sbjct: 297 TSYLRQLTEAGIRRRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ NI GRGS A S YAL IT ++P LL RFL+ R PD D+DF +RR Sbjct: 351 REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +KYG ER A T + K+A+RDV +A +P Q+ L Sbjct: 410 EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 Q I + LA+P ++++L +++ L RH S H G VI D PLS LVP+ Sbjct: 470 MDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 ++ + Q++ +E L+K D L L LT ++K+LD + RG ++ +P D Sbjct: 526 AAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRNYSIATLPGGDA 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 586 PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPIQGDMVHPYLRR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723 + G+E++ P ++ +LK T GV ++QEQVM++ + YS EAD LRR+M + Sbjct: 646 RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +M++ + R G + + IFE + F YGF +SHAA++A + Y + W+K H Sbjct: 706 DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833 P F + + + QD + ++++P V D + Sbjct: 766 PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825 Query: 834 --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + + G+ A+ I+ A + F + D C R L+ + +L Sbjct: 826 AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGAL +R ++ ++ + S + +F Sbjct: 883 AEAGALQGMVGNRNAARWAMAGVEARCPLL-----------------PGSPEERPVEFEA 925 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + R +G HP+ + +P +R+ I G E G+ + +A +V +Q Sbjct: 926 PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 985 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T KG+ +VT + + Sbjct: 986 RPATAKGT--IFVTLEDEQGMINVIVW 1010 >gi|119716129|ref|YP_923094.1| error-prone DNA polymerase [Nocardioides sp. JS614] gi|119536790|gb|ABL81407.1| error-prone DNA polymerase, DnaE-like protein [Nocardioides sp. JS614] Length = 1145 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 283/1076 (26%), Positives = 455/1076 (42%), Gaps = 100/1076 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-----AA 65 + L HSS+S L+GA ++++ + +AITD + + A F++ A Sbjct: 53 YAELHCHSSFSFLDGASGPDHLVLEALRLGLHGLAITDHDGFYGAPLFAETAQLHATNEQ 112 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 ++ G +L + + Q P +++L EGY RL ++ L Sbjct: 113 SLKTAYGAELSLGL-----TRPQHGVADPEGGHLLVLARGVEGYHRLAGAITDAQLRGDE 167 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184 K L+ L E G + ++LTG G + RA + A L LFG D + V Sbjct: 168 KGRPVYDLAELAERGRDHWLVLTGCRKGAVRRALLEHGPVAAAAELDRLTALFGHDNVVV 227 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242 L H D + LA H L +VATNN E + D + AV ++ Sbjct: 228 ELIDHGYPTDSAHNDLLAALAADHGLRVVATNNVHHARPEQHRVADAMAAVRARRSLAEM 287 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + L++ EMV F+ P A+ +VE+A F LQ P LP+ Sbjct: 288 DGWLPASGMACLRSGEEMVRRFARYPGAVARSVELADEIVFDLQKATPRLPKDGIPAG-- 345 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 LR G R A G + R ++ EL +IA F GYF+IV D Sbjct: 346 --HTPSTWLRELTERGFAQRYAGGPLETRA-----RASVEHELRIIAEKDFDGYFVIVHD 398 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 + +A+ I GRGS A S YAL IT IDP+ + L FERF++ R PD D+DF Sbjct: 399 IVAFARSRGIL-CQGRGSAASSAVCYALGITAIDPVFYRLPFERFISQHRDEEPDIDVDF 457 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI++V +YG AQ+ + K A+RD +AL Q D K + + Sbjct: 458 DAGRREEVIQWVYERYGRHNAAQVANVVGYRPKMAVRDAAKALGHSPGQQDAWSKQVTSW 517 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 V+ + + ++ ++ G RH H+ G+V+ +RP+ ++ Sbjct: 518 --TTVATRDGGEHP------ADLHVPAPVVALANGFLGAPRHLGIHSGGMVLTERPIGEV 569 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ R V Q++ E GL+KFD LGL L+ L + + + G + +LS I Sbjct: 570 VPIERARMDKRTVLQWDKDGCEYMGLVKFDLLGLGMLSALDHMMRIVEEHLGERWELSTI 629 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 P ++ Y LL ++G+FQ+ES L ++P D+ ++L RPGPI + Sbjct: 630 PKEEPAVYDLLCRADSVGVFQVESRAQIGTLPRLRPREFYDLAIEIALIRPGPIQGGAVH 689 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 Y R G+E++ HP + P+L+ T+GV ++QEQ+M +A++L + EAD+LRRAM Sbjct: 690 PYIRRATGREEVEYAHPSLVPVLERTKGVPLFQEQLMDMARVLGDCTRDEADLLRRAMGS 749 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+ E ++ K++ G ++ G+ A I+ + FA++GF +SHA ++A + Y ++W Sbjct: 750 KRGIERIESIKDKLYEGMARKGLVGEEADAIYLKILSFANFGFAESHALSFAKLVYASSW 809 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ----------------------- 815 K HYP FLAA + + + DAR+ ++ Sbjct: 810 CKLHYPGAFLAALLRAQPMGFYSPQSLVHDARRHGVEVLRPDLVRSAASADLEPLAVADG 869 Query: 816 ----------------IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859 +P + + + + L A++G+ A I+ A A+ Sbjct: 870 PVGLPRCLVDHPERTDWVPGTPDPTPAHRRDAAYAVRLGLDAVRGISAVVAERIVAARAE 929 Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQWV 915 +PF D R L+ R LE+L AGA D G SR Q L + A W Sbjct: 930 RPFADQADLSRRA---GLDARQLEALATAGAFDEAFPGGGLSRRQALWN-------AGWT 979 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 E + + G + HP + L Sbjct: 980 ESEEH----------LEGIRAAGPAPMLPEMDEVEVTMADLWATGITPAQHPFGHLRERL 1029 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 R GIK ++ + G + +A +V +Q+ T G + ++ + Sbjct: 1030 RAAGIKSVADTASAEPGRRVHVAGLVTHRQRPGTAGG--VTFLNLEDETGMLNVIC 1083 >gi|111610197|gb|ABH11587.1| DNA-directed DNA polymerase alpha chain [Lactobacillus helveticus CNRZ32] gi|328467460|gb|EGF38535.1| DNA polymerase III, alpha subunit [Lactobacillus helveticus MTCC 5463] Length = 1035 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 331/1024 (32%), Positives = 538/1024 (52%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ ++D N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLSDVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 66 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ + K+L D LY+ + + Sbjct: 116 LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 + V L+ +LPL+AT +S +L+ D L A+A + + Sbjct: 174 -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 233 HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL VI +M F YFLIV D I + + Sbjct: 289 YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 344 VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A R A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 464 EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D +T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RKNG+E Sbjct: 583 QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 643 AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP F Sbjct: 703 GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 763 AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + D I Sbjct: 821 AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + + G + ++ +Q +T+ G + + +F++ + E E Sbjct: 929 AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 VIFP 989 >gi|149276053|ref|ZP_01882198.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] gi|149233481|gb|EDM38855.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39] Length = 1074 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 267/1037 (25%), Positives = 459/1037 (44%), Gaps = 72/1037 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ LQV +++S L GA ++ A IAITD N L + I Sbjct: 2 SYTELQVTTNFSFLRGASHPEEMVAHAYALGYKKIAITDHNTLAGVVRAHTATKGKEISI 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I C+L++ PS++ + Y RL L+S+ L + K Sbjct: 62 IPACRLNLLDG----------------PSLLAYPTDMAAYTRLSALLSKGNLRAE-KGDC 104 Query: 130 RICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNL 186 + + + E EG+ I++ ++ F A ++ L +++ G+ LY+ Sbjct: 105 HLYKTDVYE-HAEGMKFIVIPPQ---ELNTLF---DFDAAFKQDLTEYRQALGNSLYLAA 157 Query: 187 QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244 R ++G D + ++ QL+ +P+ ATN+ + E DVL V + Sbjct: 158 TRAYQGNDLKKMYRIAQLSADLHIPMAATNDVYYHDTSRRELQDVLTCVREKCTIHTAGF 217 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R + +LK EM+ +F PEA+ + EIA C F L + P + + Sbjct: 218 RLHKNAERHLKPIDEMLRLFRQYPEAIRHAQEIADACEFSLSTLKYVYPEELTTDG---- 273 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + + EL + A G R + + +EL + M ++ YFL V D + Sbjct: 274 RTPQQELTHLAWEGANERYENN------IPESISAAIRYELKFMEEMNYASYFLTVYDIV 327 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A++ I GRGS A S Y L IT +DP +F LLFERF++ R PD D+DF Sbjct: 328 RFARQQGIL-CQGRGSAANSTVCYCLGITAVDPTKFELLFERFISSARNEPPDIDVDFEH 386 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 +RR+EVI+Y+ NKYG +R A + T K A+RDVG+A+ + + RL I Sbjct: 387 ERREEVIQYIYNKYGRDRAAIVATVTQQHKKGAIRDVGKAMGLSVDTISRLSSAIWEFTE 446 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +I + + DP + ++L+++ ++ G R H G VI L+ L P Sbjct: 447 DWFERDSILE----KGLNPDDPHLRKVLQLTGQMIGFPRQLGQHTGGFVITQGKLTDLCP 502 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603 + + ++N I+ G +K D L L LT ++K D + + L+ +P Sbjct: 503 ILNARMDNRTNIEWNKDDIDALGFLKIDVLALGMLTCIRKCFDLAKKHHQRDLTLANVPQ 562 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 DD E Y +++ TLG+FQ+ES + L ++P C D++ V++ RPGPI +V+ Sbjct: 563 DDPEVYQMISHADTLGVFQIESRAQQSMLPRLRPKCFYDLVIEVAIVRPGPIQGDMVHPY 622 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+NG+EK + +LK T GV ++QEQ M+IA + +G++ +EAD LRR+M Sbjct: 623 LRRRNGEEKEEYPSEALREILKRTLGVPLFQEQAMKIAIVAAGFTPTEADELRRSMATFK 682 Query: 722 -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 K + QK++ I G NG A IF+ L F YGF +SHAA++A++ Y ++W+K Sbjct: 683 VKGMVSTQKKKLIEGMIANGYEAAFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIK 742 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835 H P F A + + + DA++ +++ VN D + + + Sbjct: 743 CHLPDVFAAGLLNSMPMGFYQPAQIVIDAKKHGVEVREADVNHSDWDNLLEEKSGDWHAM 802 Query: 836 YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895 IKG+ +++A P+ ++ + C +++ LE L A A G Sbjct: 803 RLGFRQIKGLAEDEILALIQARTT-PYKNIHELCE----AGVSQSTLEKLADADAFRSMG 857 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R Q L + + ++ +F + + +E + + + Sbjct: 858 LDRRQALWEVSAL-----------QDRPIALFQGQDSESKSEPQIE-LPLMTAGEHVVQD 905 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 HP+ + LR + + E G +++A +V+ +Q+ T KG + Sbjct: 906 YASTSLSLKAHPVSFVREQLRLLRVVSTGELSEIKDGTPLKVAGLVLVRQRPGTAKG--V 963 Query: 1016 GWVTFSEPAKEYEANFF 1032 ++T + F Sbjct: 964 CFITIEDETGFSNLVVF 980 >gi|294625888|ref|ZP_06704502.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599798|gb|EFF43921.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1065 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 263/1047 (25%), Positives = 457/1047 (43%), Gaps = 87/1047 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S +S L GA S + + A+AITD +L + + + A G++ Sbjct: 28 PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 87 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + +VLLV A GY +L L++ K + Sbjct: 88 LIVGSEFTLVDG----------------IRLVLLVENAHGYPQLCGLITTAR-RAASKGA 130 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R+ + +Q + ++ G + + + AE+ +++FG+R ++ ++ Sbjct: 131 YRLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D R + LA + +A+ + + D L A+ H T+ + Sbjct: 182 HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + R+ L+ TVE+++RC+F + + PR + E Sbjct: 241 LFRNGERHLRTRRALGNIYPDALLQATVELSQRCTFDISKISYTYPRELVPEG----HTP 296 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR AG+ R G A R+ ++ EL +IA + +FL V D +++A Sbjct: 297 TSYLRQLTEAGIRKRWPGGISA------KVREDIEKELALIAFKNYEAFFLTVQDVVRFA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + NI GRGS A S YAL IT ++P LL RFL+ R PD D+DF +RR Sbjct: 351 RDQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +KYG ER A T + K+A+RDV +A +P Q+ L Sbjct: 410 EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 Q I + LA+P ++++L +++ L RH S H G VI D PLS LVP+ Sbjct: 470 MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + Q++ +E L+K D L L LT ++K+L+ + RG ++ +P DD Sbjct: 526 AAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSIATLPGDDA 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 586 PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723 + G+E++ P ++ +LK T GV ++QEQVM++ + YS EAD LRR+M + Sbjct: 646 RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +M++ + R G + + IFE + F YGF +SHAA++A + Y + W+K H Sbjct: 706 DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833 P F + + + QD + ++++P V D + Sbjct: 766 PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825 Query: 834 --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + + G+ A+ I+ A + F + D C R L+ + +L Sbjct: 826 AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGAL +R ++ ++ + S + +F Sbjct: 883 AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVEFEA 925 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + R +G HP+ + +P +R+ I G E G+ + +A +V +Q Sbjct: 926 PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLSELQGRRHGSGVHVAGLVTQRQ 985 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T KG+ +VT + + Sbjct: 986 RPATAKGT--IFVTLEDEQGMINVIVW 1010 >gi|284031892|ref|YP_003381823.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836] gi|283811185|gb|ADB33024.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836] Length = 1145 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 290/1078 (26%), Positives = 460/1078 (42%), Gaps = 104/1078 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L VHS++S L+GA S ++++ AIA+TD + + A F++ A A + + Sbjct: 66 YAELHVHSNFSFLDGASSPEQLVEEAVRHGLHAIALTDHDGFYGAARFAETADAYAMPTV 125 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P +++L EGY RL ++ +L K Sbjct: 126 YGAELSLGLPG-----PQNGVADPDGSHLLVLAEGKEGYHRLAGAMTEAHLAGGEKGRPV 180 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFG-DRLYV 184 L L G + ++LTG G + +A + A + L LFG DR+ V Sbjct: 181 YDLEELAARGRDHWLILTGCRKGAVRQALTTASSPAAGAAAARRELDRLTALFGRDRVVV 240 Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242 L HR + LA LP VAT N + D+ L AV ++ Sbjct: 241 ELIDHRMPLSSTHNQALADLAAAAGLPTVATGNVHYAQPRDHRLASALAAVRARRSLDEM 300 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 P +L + +EM F + P A+ +VE+A + +F L+ P LP+ Sbjct: 301 DGWLPAGPAAFLHSGAEMAMKFRNFPGAVARSVELADQLAFRLRAAQPRLPKIDVPAG-- 358 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR G R D QRL+ EL+VI + F GYFLIV D Sbjct: 359 --LTQMGWLRQLVFEGAAERYG-----TRDQRPDAYQRLERELDVIEQRDFPGYFLIVWD 411 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+++ I GRGS A S Y L +T +D + + L FERFL R PD D+DF Sbjct: 412 MVRYAREHGIL-CQGRGSAANSAVVYCLGVTAVDSILYGLPFERFLAATRSEEPDIDVDF 470 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+Y+ KYG AQ+ S + K A+RD+ +AL Q D K + Sbjct: 471 DSDRREEVIQYMYGKYGRRNAAQVANVISYRPKMAVRDMAKALGYSTGQQDAWSKQVDGW 530 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A S ++E++ +L RH H+ G+V+ ++P+ ++ Sbjct: 531 SADLSS--------------TDHDIPPLVVEMATELLKAPRHLGIHSGGMVLTEQPVGEV 576 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601 VP+ V Q++ GL+KFD LGL L +Q +D +A R G + L I Sbjct: 577 VPIEHARMEKRTVLQWDKDDCAYMGLVKFDMLGLGMLAAIQYCIDLVADRLGERWQLHTI 636 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659 P ++ Y L ++G+FQ+ES L ++P D+ ++L RPGPI + Sbjct: 637 PKEEQGVYDQLCRADSVGVFQVESRAQMATLPRLRPRRFYDLACEIALIRPGPIQGGAVH 696 Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718 + R G+E I HPL++P+L+ T+GV ++QEQ+MQ+A + G EAD+LRRAM Sbjct: 697 PFVRRMTGQEPITYPHPLLEPVLERTKGVPLFQEQLMQMAMAIGGIDGDEADLLRRAMGS 756 Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K+ E++ K + +G + NG++ +A +I+ + FA++GF +SH+ ++A++ Y + W Sbjct: 757 KRGIEKISSLKTKLYAGMATNGLTGDVADDIYARIEAFANFGFAESHSISFALLVYASTW 816 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832 + HYP FLAA + + + DAR+ +++ P + V + D Sbjct: 817 FRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVEVRRPDLQRSGVHALLEDLDDRRP 876 Query: 833 ------------------------------------NRIYYSLAAIKGVGTTTARHIMEA 856 + LAA+K +GTT A I+E Sbjct: 877 ARPTGMDSCLATVQPPIGPFDPDAPDTCADHRRDGAFAVRLGLAAVKSIGTTMAETIVEQ 936 Query: 857 SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915 P+ L D R L LE+L AGA DCFG R Q L A Sbjct: 937 RELHGPYADLADLARRT---GLTASQLEALATAGAFDCFGIDRRQALWQ-------AGRA 986 Query: 916 EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975 + R ++ FA + G HP++ + L Sbjct: 987 AEERPDR----FAGITAAGPP----PMLPGMGEDEVTVADLWATGITTGKHPVEHVRAQL 1038 Query: 976 RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 GI + A +V +Q+ T G + ++ + P Sbjct: 1039 DAAGILSATALRTARPDTRVTAAGVVTHRQRPATASG--VTFLNLEDETGMINVIVSP 1094 >gi|327183463|gb|AEA31910.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118] Length = 1035 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 328/1024 (32%), Positives = 530/1024 (51%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 Q+ ++ G +++ T GY L+ L S + L + G+ + Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F + Q+ L KK+ D Y+ + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVSD-FYLGVYA-AEN 172 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251 D+ V L+ +LPLVA +S +L D L A+ + + Sbjct: 173 DQDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 233 HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQ----NKFLTSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL +I +M F YFLIV D I + + Sbjct: 289 YLHYLAQTGLQARFGQ-----EKIPAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 344 VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++V++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMAEVNKWARAIPFSKGKMTLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 464 QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNGKE Sbjct: 583 ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 643 PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 703 SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 763 AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 821 AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + + E E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + G + ++S ++ +T+ + + F++ + + E Sbjct: 929 AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 IIFP 989 >gi|227823700|ref|YP_002827673.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] gi|254777927|sp|C3M9Z5|DNAE2_RHISN RecName: Full=Error-prone DNA polymerase gi|227342702|gb|ACP26920.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234] Length = 1117 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 255/1063 (23%), Positives = 446/1063 (41%), Gaps = 90/1063 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63 + P+F L +++S LEGA ++ + + D N++ + KA Sbjct: 1 MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60 Query: 64 -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 QP G +L P I+ G+ L L+S L Sbjct: 61 EDYPFQP--GARLVFA---------------DATPDILAYPKNRRGWGHLCRLLSVGNLR 103 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + K + L+ L E + L+++ G ++ E L K G+RL Sbjct: 104 AK-KGDCTLYLADLLEWQEDLLLIVMPGEG--------RPQPEILEALLEKLKASAGNRL 154 Query: 183 YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L R+ +DR+ + + +A + ++ L+ATN++L+ DV+ A+ ++ Sbjct: 155 YLGLAPRYDSFDRHDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIA 214 Query: 242 Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + + +LK EMV +F D PEA+ N + +R SF L + + Sbjct: 215 SAGFLLQKNAERHLKGPKEMVRLFRDYPEAIVNANKFFKRLSFSLDELSHQY-----PDE 269 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + LR G R G + +++++EL +I K+ YFL V Sbjct: 270 NAEGETPAESLRRLVAEGALERYPSGV------PEKVTRQIEYELELIHDKKYEPYFLTV 323 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +++A+ NI GRGS A S + L ITD+DP +F+LLF+RFL+ DR PD D+ Sbjct: 324 HKLVKFARSVNIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPDIDV 382 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR+EVI+Y+ YG E S ++++A R+V +A + L + Sbjct: 383 DFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSVW 442 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + + ++ +ADP R+L + L RH S H G VI L Sbjct: 443 GWGTSPFT----EEQAKGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLD 498 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 ++VP+ D + +++ +++ ++K D L L LT L ++ FL K Sbjct: 499 EVVPIMNTAMPDRYMIEWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGKPKTLA 558 Query: 601 IPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 ++D + Y ++ T+G+FQ+ES L ++P + D++ V++ RPGPI Sbjct: 559 ELYEDQQAAVYDMICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPIQGN 618 Query: 659 VVYNNRKNGK-----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +V+ K + E + P + +L+ T GV ++QEQ MQIA +G+S SEAD L Sbjct: 619 MVHPYLKRREAQRKGEPVDYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678 Query: 714 RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 RRAM + + + + I G +NG + A F + F +YGF +SHAA++A + Sbjct: 679 RRAMATFKRTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASFASL 738 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 Y ++W K +YP F AA + + + +DAR+ ++I+P VN D + Sbjct: 739 VYASSWFKAYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEG 798 Query: 833 -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 + +KG+ ++ + + S+ D Sbjct: 799 EAMFRKEAIDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALVARRGEG-YRSVHDLW 857 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 R L R VLE L A A G R + L ++ + + + +F Sbjct: 858 LR---SGLTRAVLERLADADAFRSIGLDRRRALWAVKAL-------NEQSAVERLPLFDG 907 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 T + ++ R L HP+ + +MGI + T Sbjct: 908 AGSTDLQVEPAVALPDMAAGEHVIHDYRYLTLSLKAHPVSFMRGDFARMGILSSRDLART 967 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A +V+ +Q+ + G + ++T + + Sbjct: 968 PAGRRVTVAGLVLVRQRPGSANG--VIFMTIEDETGVANIIVW 1008 >gi|227517968|ref|ZP_03948017.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104] gi|227074586|gb|EEI12549.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104] Length = 1109 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQSTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|257083953|ref|ZP_05578314.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1] gi|256991983|gb|EEU79285.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1] Length = 1109 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPANQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP +D Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|161507446|ref|YP_001577400.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571] gi|160348435|gb|ABX27109.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571] Length = 1035 Score = 569 bits (1466), Expect = e-159, Method: Composition-based stats. Identities = 330/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ ++++++ A+ + D N + + F + A AGI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132 QL ++ G ++ T GY L+ L S + +L D G+ + + Sbjct: 66 QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F N Q+ + K+L D LY+ + + Sbjct: 116 LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251 + V L+ +L L+AT +S +L+ D L A+A + + Sbjct: 174 -QNYIDYVRSLSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HYL +++ + DL +A+ NT ++A +C+ + P+LP++ +K+ E Sbjct: 233 HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL VI +M F YFLIV D I + + Sbjct: 289 YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DP+ ++LLFERFLNP R MPD D+D +RD Sbjct: 344 VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + ++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 +A R A P L + + LEGL RH S HAAG+VI D ++ + + Sbjct: 464 EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L L+ + Q+G+K+D + IP +D +T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T +FQ ES G+RQ L + PD ED++A+ +LYRPGP+ NI + RKNG+E Sbjct: 583 QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 643 AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G K G +K +A +++ + +FA+YGFN+SHA AY I+Y A++K HYP F Sbjct: 703 GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K + + A++ NI+I+PP +N +++ + + +I L AIKG+ Sbjct: 763 AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 AR I A KP+ SL DF R+D K L +++L+ AGA D +R +LL + D I Sbjct: 821 AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + + G + ++ +Q +T+ G + + +F++ + E E Sbjct: 929 AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 VIFP 989 >gi|162146502|ref|YP_001600961.1| putative error-prone DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] gi|161785077|emb|CAP54621.1| putative Error-prone DNA polymerase [Gluconacetobacter diazotrophicus PAl 5] Length = 1069 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 270/1044 (25%), Positives = 449/1044 (43%), Gaps = 76/1044 (7%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 E PS+ LQ ++YS L GA + + + A A+ I D + + ++ + A Sbjct: 19 ESLPSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKH 78 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G++ ++GC+L + P ++ + + RL L++ Sbjct: 79 GVRLVVGCRLVLRDG----------------PPLLAYPTDRAAWGRLCRLLTASKRKAAD 122 Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYV 184 + + + L T+GLI++ + A R L + L GDR Y+ Sbjct: 123 GTAPGLRRADL-HRATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRGYL 170 Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 L R R D R ++ ++A + V T + L+ DVL + + + Sbjct: 171 ALTLRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDEL 230 Query: 244 DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 + R D +LK+ +EM +++ P AL T EIA RC+F P DD Sbjct: 231 GQGREAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYPEES----DD 286 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + ++ L A A L R GA R+++++EL +I + ++ YFL V Sbjct: 287 PSETPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHT 340 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 ++ A+ I GRGS A S + L IT+IDP +LLFERF++ +R PD D+DF Sbjct: 341 IVRQARSQGIL-CQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDF 399 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 +RR+EVI+++ +YG +R A T +A+ ALRDVG+ L +P D L + Sbjct: 400 ESERREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLP---ADVTGLLSTHL 456 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 A A + +R L + + L+++ +L G R TH G V+ L L Sbjct: 457 GALSFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLDDL 516 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 VP+ D + ++ I+ +K D LGL L ++++ D L K LS I Sbjct: 517 VPIQPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLSGI 576 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P D +TY +++ T+G FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 577 PPGDADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDMVH 636 Query: 662 NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 + ++ + P + +L +T GV ++QEQ MQIA +G++ EAD LRRAMG Sbjct: 637 PYLQRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAMGT 696 Query: 720 KI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + ++R I G + A IF L F YGF +SHAA++A+I+Y ++W Sbjct: 697 FRGHGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYASSW 756 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----N 833 MK HYP F AA + + + + +DAR + + P VN D + Sbjct: 757 MKCHYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGRST 816 Query: 834 RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L +KG+ T A ++ + P+D +ED R L LE L A A Sbjct: 817 AVRLGLRMVKGLSNTDAARLVASRM-PPYDGIEDVWRR---SGLGPDALECLAQADAFHA 872 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENS 948 G R L + + +FA + + + Sbjct: 873 LGRDRRAALWDIKGL-----------AESPLPLFAAADRGLNRPLPECVEPSVPLTAMTE 921 Query: 949 SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008 + G HP+ + LR G+ + A G + + +V+ +Q+ Sbjct: 922 GQEVVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPG 981 Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032 T +G + ++T + + Sbjct: 982 TAQG--VLFMTIEDETGMANLVLW 1003 >gi|315173327|gb|EFU17344.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1346] Length = 1109 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP +D Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|300860057|ref|ZP_07106145.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|300850875|gb|EFK78624.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|315144680|gb|EFT88696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2141] gi|315160663|gb|EFU04680.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0645] Length = 1109 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 320/1031 (31%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|257077930|ref|ZP_05572291.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1] gi|256985960|gb|EEU73262.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1] Length = 1109 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEES-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|83748142|ref|ZP_00945170.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|207739146|ref|YP_002257539.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] gi|83725224|gb|EAP72374.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551] gi|206592519|emb|CAQ59425.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum IPO1609] Length = 1081 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 264/1073 (24%), Positives = 436/1073 (40%), Gaps = 111/1073 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA + ++ + A A+A+TD ++ + A AG++ Sbjct: 18 PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + +VLL +GY L E +++ L K Sbjct: 78 LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125 Query: 129 VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183 R+ L +GL L G + + Q + L +++FGDRL Sbjct: 126 YRLLADDLAA-PADGLAHLRGMPHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + L DR+R V ++ ++PLVAT + S + HDVL A+ S +++ Sbjct: 183 LELPLRHADDRHR-GTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ F L +VE+A C F L P + E Sbjct: 242 GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG 301 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 L + +AG R + R ++ EL +IA +++ +FL V Sbjct: 302 ----LTPAAYLHAEVMAGTARRYGK------AIPAKVRAQIAEELALIAELRYEPFFLTV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +++A+ +I GRGS A S Y L IT++DP + LF RFL+ R PD D+ Sbjct: 352 YDVVRFARSRDIL-CQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDV 410 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR+EVI+Y+ KYG R A + + ++ALRDVGRAL + ++++ K Sbjct: 411 DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 A A + + P V R + +L G RH S H G VI LS Sbjct: 471 WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593 +LVP+ D V Q++ +E L+K D L L LT ++++LD A+ G Sbjct: 527 RLVPIENAAMRDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586 Query: 594 VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 L++ D +TY +++ T+G+FQ+ES + L ++P D++ V++ R Sbjct: 587 ASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646 Query: 652 PGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGPI +V+ + + + + P + +L+ T GV I+QEQVM+IA G Sbjct: 647 PGPIQGGMVHPYLQRREAMRNGNSDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706 Query: 705 YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 ++ EAD LRR M K+ + Q+ + + FA+YGF Sbjct: 707 FTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA +A ++Y ++++K H P F AA + + + Q+AR+ ++++P V Sbjct: 767 ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826 Query: 823 TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 D + + I L+ I+G+ A I+ A A PF S+ED R Sbjct: 827 VSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRA-- 884 Query: 875 KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920 ALD R Q L +Q+ Q Sbjct: 885 ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHA---- 925 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + + + L + + LG HPL + +P L +M Sbjct: 926 -----LLRQARPVEAPLALL----APSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G R +V +Q+ T KG+ +V+ + +P Sbjct: 977 VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027 >gi|291301059|ref|YP_003512337.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM 44728] gi|290570279|gb|ADD43244.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM 44728] Length = 1073 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 285/1047 (27%), Positives = 459/1047 (43%), Gaps = 82/1047 (7%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA S +++ + +AITD + L+ A+ F+Q A G+ + Sbjct: 30 YAELHAHSNFSFLDGASSPEDLVAEALRLGLSGLAITDHDGLYGAVRFAQAAKGTGLATV 89 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L I + + P P+ +++L AEGY +L + +L K Sbjct: 90 YGAELSIGLTGE-----RAGVPDPSGTHLLVLARGAEGYAKLSAAIGNAHLAGGQKGLPD 144 Query: 131 I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 L + +++LTG GP+ RA A L +LFG D +YV L Sbjct: 145 YGSLEGVAARLRGHVVVLTGCRKGPVRRALDAGGVDAARVELERLVELFGRDGVYVELTD 204 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H+ + D R + LA L +VATNN + + V AV + + + D Sbjct: 205 HQAFTDGDRNEALADLASELGLSVVATNNVHYARSSRHRLSQVAAAVRANMPLDELDGWL 264 Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 L + EMV F+ A+ +++ +AR +F L + AP LP F D Sbjct: 265 PAAPTARLCSPDEMVERFAPFGGAVASSLRLARELAFDLDLVAPALPPFPVPAGHD---- 320 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E++ LR+ AG R D ++LD EL+VI R+ F+GYFLIV D + + Sbjct: 321 EDSWLRHLVQAGAAERYGPLG-----SRSDVVRQLDHELDVIKRLGFAGYFLIVHDIVDY 375 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 ++ I V GRGS A SV + L IT DP+ F LLFERFL+P R PD D+D R Sbjct: 376 CRREGILV-QGRGSAANSVVCFTLGITAADPIAFKLLFERFLSPAREGPPDIDLDIEARR 434 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+ VI+YV + YG AQ+ + + ++A+RD AL QVD P Sbjct: 435 REAVIQYVYDTYGRTYAAQVANVITYRRRSAIRDSAAALGYSPGQVDAWIAASPRRGGPA 494 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 ++ + + +L G RH H+ G+VI DRP+ +VP+ Sbjct: 495 LT-----------------ELPADVGTYAGQLLGAPRHLGIHSGGMVICDRPIIDVVPVE 537 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 V Q++ AGL+K D LGL LT L+++ D VDL+ + DD Sbjct: 538 HARMDKRTVLQWDKDDCADAGLVKIDLLGLGMLTALREARDVANAHYDVPVDLAALTPDD 597 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663 E Y ++ +G FQ+ES Q ++P + D+ ++L RPGPI + Y Sbjct: 598 AEVYAMVHKGDAIGTFQIESRAQLQLAPRLRPANLHDLAVQIALVRPGPIQGGAVHPYLR 657 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722 R++G E +V H L P L+++ GV ++QEQ+MQ+A G+S ++AD LR+AM K+ Sbjct: 658 RRDGLEPVVYPHRLAQPALEKSLGVPLFQEQMMQLAVDCGGFSPADADELRQAMGAKRSA 717 Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 E M + K+RF +GA+ N I +++ + F+ YGF +SHA ++A I+Y + ++K + Sbjct: 718 ERMHRLKDRFYAGAAANDIPHATIDDLWSRMEAFSGYGFPESHAISFAYIAYASCYLKRY 777 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--------- 833 YP FL + + I DAR+ ++I P +N + + Sbjct: 778 YPAAFLTGLIRAQPMGFYSINTLIADARRHGVRIHPVHINHSHATTTLDGHGTPAPADAP 837 Query: 834 ---------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 + L + G+ T A I +P+ S+ D R L LE+ Sbjct: 838 ARQWGSGGPAVRLGLNQVHGISDTVAERIA---VGQPYTSITDLARRA---GLTETHLEN 891 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L AGAL G +R Q L H+ + ++T Sbjct: 892 LATAGALTALGPTRRQALWMAAPAAANT----------------HDTIDGTIQLTAPMLP 935 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 +++ + G HP++ + L ++ + + +V + Sbjct: 936 GMSNAELTAADLTATGSSVDSHPIEHIRHQLDAHDATPIDQLATLPDRTRVVVGGIVTHR 995 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031 Q +T G I ++ + + Sbjct: 996 QAPETAGG--ILFINLEDETGQANIVC 1020 >gi|256761801|ref|ZP_05502381.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3] gi|256957134|ref|ZP_05561305.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5] gi|257086401|ref|ZP_05580762.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6] gi|294779297|ref|ZP_06744701.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1] gi|307269669|ref|ZP_07551002.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248] gi|256683052|gb|EEU22747.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3] gi|256947630|gb|EEU64262.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5] gi|256994431|gb|EEU81733.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6] gi|294453664|gb|EFG22062.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1] gi|306513997|gb|EFM82588.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248] gi|315027021|gb|EFT38953.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2137] gi|315031757|gb|EFT43689.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0017] gi|315034170|gb|EFT46102.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0027] gi|315171981|gb|EFU15998.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1342] gi|323480286|gb|ADX79725.1| DNA polymerase III subunit alpha [Enterococcus faecalis 62] Length = 1109 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|257415661|ref|ZP_05592655.1| DNA polymerase III alpha subunit [Enterococcus faecalis AR01/DG] gi|257157489|gb|EEU87449.1| DNA polymerase III alpha subunit [Enterococcus faecalis ARO1/DG] gi|315147993|gb|EFT92009.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4244] Length = 1109 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 320/1031 (31%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G K A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|209543499|ref|YP_002275728.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209531176|gb|ACI51113.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 1049 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 269/1041 (25%), Positives = 448/1041 (43%), Gaps = 76/1041 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 PS+ LQ ++YS L GA + + + A A+ I D + + ++ + A G++ Sbjct: 2 PSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKHGVR 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 ++GC+L + P ++ + + RL L++ + Sbjct: 62 LVVGCRLVLRDG----------------PPLLAYPTDRAAWGRLCRLLTASKRKAADGTA 105 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQ 187 + + L T+GLI++ + A R L + L GDR Y+ L Sbjct: 106 PGLRRADL-HRATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRGYLALT 153 Query: 188 -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 R R D R ++ ++A + V T + L+ DVL + + + + Sbjct: 154 LRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDELGQG 213 Query: 247 RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 R D +LK+ +EM +++ P AL T EIA RC+F P DD + Sbjct: 214 REAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYPEES----DDPSE 269 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 ++ L A A L R GA R+++++EL +I + ++ YFL V ++ Sbjct: 270 TPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHTIVR 323 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 A+ I GRGS A S + L IT+IDP +LLFERF++ +R PD D+DF + Sbjct: 324 QARSQGIL-CQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDFESE 382 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+++ +YG +R A T +A+ ALRDVG+ L +P D L + A Sbjct: 383 RREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLP---ADVTGLLSTHLGAL 439 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 A + +R L + + L+++ +L G R TH G V+ L LVP+ Sbjct: 440 SFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLDDLVPI 499 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604 D + ++ I+ +K D LGL L ++++ D L K LS IP Sbjct: 500 QPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLSGIPPG 559 Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664 D +TY +++ T+G FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 560 DADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDMVHPYL 619 Query: 665 KNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI- 721 + ++ + P + +L +T GV ++QEQ MQIA +G++ EAD LRRAMG Sbjct: 620 QRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAMGTFRG 679 Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781 + ++R I G + A IF L F YGF +SHAA++A+I+Y ++WMK Sbjct: 680 HGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYASSWMKC 739 Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836 HYP F AA + + + + +DAR + + P VN D + + Sbjct: 740 HYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGRSTAVR 799 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896 L +KG+ T A ++ + P+D +ED R L LE L A A G Sbjct: 800 LGLRMVKGLSNTDAARLVASRM-PPYDGIEDVWRR---SGLGPDALECLAQADAFHALGR 855 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVR 951 R L + + +FA + + + Sbjct: 856 DRRAALWDIKGL-----------AESPLPLFAAADRGLNRPLPECVEPSVPLTAMTEGQE 904 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + G HP+ + LR G+ + A G + + +V+ +Q+ T + Sbjct: 905 VVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPGTAQ 964 Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032 G + ++T + + Sbjct: 965 G--VLFMTIEDETGMANLVLW 983 >gi|256960227|ref|ZP_05564398.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96] gi|293382589|ref|ZP_06628522.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387817|ref|ZP_06632359.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906805|ref|ZP_07765802.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512] gi|312978940|ref|ZP_07790666.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516] gi|256950723|gb|EEU67355.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96] gi|291080032|gb|EFE17396.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291082792|gb|EFE19755.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627059|gb|EFQ10342.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512] gi|311288377|gb|EFQ66933.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516] Length = 1109 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLDYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|255971496|ref|ZP_05422082.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1] gi|255974111|ref|ZP_05424697.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2] gi|256617966|ref|ZP_05474812.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200] gi|257089451|ref|ZP_05583812.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188] gi|307275526|ref|ZP_07556668.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134] gi|307278911|ref|ZP_07559971.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860] gi|312904606|ref|ZP_07763764.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635] gi|312952684|ref|ZP_07771546.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102] gi|21314374|gb|AAM46913.1|AF508326_1 DNA polymerase III E [Enterococcus faecalis] gi|255962514|gb|EET94990.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1] gi|255966983|gb|EET97605.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2] gi|256597493|gb|EEU16669.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200] gi|256998263|gb|EEU84783.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188] gi|306504393|gb|EFM73603.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860] gi|306507914|gb|EFM77042.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134] gi|310629200|gb|EFQ12483.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102] gi|310632119|gb|EFQ15402.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635] gi|315153119|gb|EFT97135.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0031] gi|315577423|gb|EFU89614.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0630] Length = 1109 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|29375623|ref|NP_814777.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583] gi|227555152|ref|ZP_03985199.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22] gi|257418632|ref|ZP_05595626.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11] gi|29343084|gb|AAO80847.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583] gi|227175736|gb|EEI56708.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22] gi|257160460|gb|EEU90420.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11] gi|315574296|gb|EFU86487.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309B] gi|315581632|gb|EFU93823.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309A] gi|327534630|gb|AEA93464.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus faecalis OG1RF] Length = 1109 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|107023760|ref|YP_622087.1| error-prone DNA polymerase [Burkholderia cenocepacia AU 1054] gi|116690846|ref|YP_836469.1| error-prone DNA polymerase [Burkholderia cenocepacia HI2424] gi|105893949|gb|ABF77114.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116648935|gb|ABK09576.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424] Length = 1071 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 270/1061 (25%), Positives = 452/1061 (42%), Gaps = 72/1061 (6%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + P + L S++S L GA ++++ IAITD +L A Sbjct: 1 MVAEFSLLPDYAELFCRSNFSFLHGASHAEELVERAVKLGYRGIAITDECSLAGAPRMHV 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G+ +IG D+ + G P P +VLL EGY L EL+S Sbjct: 61 AAKEEGLSLVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-R 115 Query: 121 LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 ++ K + ++ L + L + + + + V + ++ F+ F Sbjct: 116 RMEAPKGTYKLTSRMLSAPPAKFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATF 173 Query: 179 GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+R V L Q R D + ++ + LVA + DV+ A+ Sbjct: 174 GERARVGLVQLQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVG 233 Query: 238 TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V + +L++R + +FS A T + C F L P + Sbjct: 234 MPVAECGYALAPNAEQHLRSRGRIAKLFSAEEIA--ETCAMLDACDFDLDDLKYEYPLEL 291 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + L+ + AG+ R G + +++ +EL +IA++++ + Sbjct: 292 VPRG----HTPTSYLKQETWAGVARRYWNGV------PEKVAKQIRYELALIAKLEYEPF 341 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL V D +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ R P Sbjct: 342 FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF RR+EVI+++ KYG +R A + + + LR+ G+AL + VDR+ Sbjct: 401 DIDVDFEHQRREEVIQHIYEKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVA 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K LQ A A P + E++ +L RH S H+ G VI Sbjct: 461 KGHRWFDGSRDLLQQFAST----GLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISR 516 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------A 590 L++LVP+ V Q++ +E GL+K D L L L+ L ++ D A Sbjct: 517 GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPA 576 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + G L IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ Sbjct: 577 KDGKLFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIV 636 Query: 651 RPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGPI V+ K + ++ + +L T GV I+QEQVMQIA + + Sbjct: 637 RPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAA 696 Query: 704 GYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G++ EAD LRRAM K ++K +++ ISG + ++ A IFE + F +YGF Sbjct: 697 GFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFP 756 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA++A ++Y ++W+K H P FLAA + + + QDA++ ++++P V Sbjct: 757 ESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVT 816 Query: 823 TPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 + + + L+ ++G+ AR I A PFDS++ R Sbjct: 817 QSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSIDSLARRA 876 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 +L RR LE+L A AL R L + ++ A Sbjct: 877 ---QLERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAPI 921 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 +++ + + + G + HP+ + +P LR + E G Sbjct: 922 DEAEQ---PALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDG 978 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R +V+++Q T KG + ++T + P Sbjct: 979 RLARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017 >gi|294665463|ref|ZP_06730748.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604762|gb|EFF48128.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1065 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 261/1047 (24%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S +S L GA S + + A+AITD +L + + + A G++ Sbjct: 28 PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 87 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + +VLLV A GY +L L++ K + Sbjct: 88 LIVGSEFTLVDG----------------IRLVLLVENAHGYPQLCGLITTAR-RAASKGA 130 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 + + +Q + ++ G + + + AE+ +++FG+R ++ ++ Sbjct: 131 YHLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 HR D R + LA + +A+ + + D L A+ H T+ + Sbjct: 182 HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + + R+ L+ TVE+++RC+F + + PR + E Sbjct: 241 LFRNGERHLRTRRALGNIYPDALLQATVELSQRCTFDISKISYTYPRELVPEG----HTP 296 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR AG+ R G A R+ ++ EL +IA + +FL V D +++A Sbjct: 297 TSYLRQLTEAGIRKRWPGGISA------KVREDIEKELALIAFKNYEAFFLTVQDVVRFA 350 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S YAL IT ++P LL RFL+ R PD D+DF +RR Sbjct: 351 RDQDIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +KYG ER A T + K+A+RDV +A +P Q+ L Sbjct: 410 EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 Q I + LA+P ++++L +++ L RH S H G VI D PLS LVP+ Sbjct: 470 MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606 + + Q++ +E L+K D L L LT ++K+L+ + RG ++ +P DD Sbjct: 526 AAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSIATLPGDDA 585 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 586 PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 645 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723 + G+E++ P ++ +LK T GV ++QEQVM++ + YS EAD LRR+M + Sbjct: 646 RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +M++ + R G + + IFE + F YGF +SHAA++A + Y + W+K H Sbjct: 706 DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833 P F + + + QD + ++++P V D + Sbjct: 766 PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825 Query: 834 --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885 I + + G+ A+ I+ A + F + D C R L+ + +L Sbjct: 826 AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882 Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945 AGAL +R ++ ++ + S + +F Sbjct: 883 AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVEFEA 925 Query: 946 ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005 + + R +G HP+ + +P +R+ I G E G+ + +A +V +Q Sbjct: 926 PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 985 Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + T KG+ +VT + + Sbjct: 986 RPATAKGT--IFVTLEDEQGMINVIVW 1010 >gi|317121639|ref|YP_004101642.1| DNA polymerase III subunit alpha [Thermaerobacter marianensis DSM 12885] gi|315591619|gb|ADU50915.1| DNA polymerase III, alpha subunit [Thermaerobacter marianensis DSM 12885] Length = 1264 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 292/886 (32%), Positives = 463/886 (52%), Gaps = 39/886 (4%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 FVHL HS+YS L+GA + ++++ A PA+A+TD +N+ A+EF + A AAGI+PI Sbjct: 2 FVHLHCHSAYSFLDGASPVQALVERAAGLGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLIELVSRMYL 121 G +L + + + + G + P +VLL + GY RL L++R +L Sbjct: 62 QGVELTLLLDEPAGSSGGGTSERPLTAPRGGELATAHLVLLATGPAGYARLCRLLTRAHL 121 Query: 122 LDQGKQSVRICLSWLQE--------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173 +Q + + S L E + GLI L+G GP+ +A A +R Sbjct: 122 -EQPRGRPALPWSVLLEEVAPGGEPLPGHGLIALSGCRRGPVLQALLQGDRATALERARR 180 Query: 174 FKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 + FG + ++ LQ +R + LA + +VATN+ + + + + HD+L Sbjct: 181 LRDTFGREHFFLELQGGWLPGNRALNRTLADLAEHLGVGVVATNDVHYATRDRFAVHDLL 240 Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290 V V + R ++ LK+ M +F+ P+AL+ T+ IA RC +L A Sbjct: 241 ACVRLGIPVDEPHPQRHLNAENDLKSPRAMAQMFAGYPQALKATLAIAERCQPVLPAGAV 300 Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350 P F E LR + G G RQRL+ EL +I + Sbjct: 301 PRPAFPLPPG----IRAEAYLREQVERGALW-------RYGRITPRIRQRLEHELRIIEK 349 Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410 ++ + YFL+V D ++A++ I GRGS A S AY L ITD+D + LLFERFL+ Sbjct: 350 LQLADYFLLVWDVARYARQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSL 408 Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470 +R PD DIDF RD+V YV+ +YG E VA + T+ + A+ ALRD G+AL P + Sbjct: 409 ERAEQPDIDIDFDARYRDQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKALGFPTA 468 Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530 +DR+ K +P + + +A+ + R+ L RL+++ + GL RH TH Sbjct: 469 VIDRIAKRVPYALSRHL-GRALEEVPELRDLDLPRERFRRLVDLCEAAAGLPRHMGTHLG 527 Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590 G+VI RPL +L P+ R + QF+ + +E+ GL+K D L L+TL +++++ + Sbjct: 528 GLVISRRPLVELSPLQR-SAKGRRILQFDKRGVEELGLVKLDLLPLRTLGAVEEAVRVIR 586 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 +R D IP DD TY LL T T+G FQLES R ++P+ +ED++A V++ Sbjct: 587 RRDPAFDYDRIPLDDRATYELLRTGETVGAFQLESPAQRALQPRLKPENLEDVVASVAII 646 Query: 651 RPGPIDNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGPI +V R+ G+E + +HP ++P+L++T GV+++QEQV++IA ++G++ Sbjct: 647 RPGPIKGDMVEPFLARRRGREPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPG 706 Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD LRR M + E+M+ F+ A + G+ + +A IF ++ +A YGF ++HAA Sbjct: 707 EADRLRRVMTHARSPEDMEDIGRHFLRRAREQGVDEAVAQAIFRMIQGYASYGFCEAHAA 766 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 A+ V +Y+TA++ HYP E+ AA ++L+ C +A + I+I+P +N V Sbjct: 767 AFGVTAYKTAYLLAHYPAEWYAALLSLQPMGYYPPNTLCVEAARRGIRILPLDINASQVG 826 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872 F I L A+KG+G A I+ PF DF R+ Sbjct: 827 FAATPGAIRIGLRAVKGLGEEPAAAIVAERERGGPFRHFMDFLLRM 872 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 11/158 (6%) Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935 L+R + +L+ AGA D +R LL LD A+ G + Sbjct: 944 VLDRDQVAALIRAGAFDGLHPNRRALLWGLDEALAAARSAAGGEL----------AGALA 993 Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYF-SGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + ++ E+ VLG H L + + +L G + G + Sbjct: 994 AAWSPPAVDDFPELEKWAMEREVLGIDVHRRHLLAMLREVLDARGYRSAAAIRRLPAGAS 1053 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +R A + V + TR G I ++T + + F Sbjct: 1054 VRAAGIPVRPHRPPTRSGRIIVFLTLEDETGLVDVTVF 1091 >gi|170734171|ref|YP_001766118.1| error-prone DNA polymerase [Burkholderia cenocepacia MC0-3] gi|169817413|gb|ACA91996.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 1071 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 270/1061 (25%), Positives = 453/1061 (42%), Gaps = 72/1061 (6%) Query: 1 LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60 + P + L S++S L GA ++++ IAITD +L A Sbjct: 1 MVAEFSLLPDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHV 60 Query: 61 KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120 A G+ +IG D+ + G P P +VLL EGY L EL+S Sbjct: 61 AAKEKGLPLVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-R 115 Query: 121 LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178 ++ K + ++ L + L + + + + V + ++ F+ F Sbjct: 116 RMEAPKGTYKLTSRILSAPPAKFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATF 173 Query: 179 GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237 G+R + L Q R D + ++ + LVA + DV+ A+ Sbjct: 174 GERARLGLVQLQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVG 233 Query: 238 TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296 V + +L++R + +FS E + T + C F L P + Sbjct: 234 MPVAECGYALAPNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDLDDLKYEYPLEL 291 Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356 + L+ + AG+ R G + +++ +EL +IA++++ + Sbjct: 292 VPRG----HTPTSYLKQETWAGVARRYWNGV------PEKVAKQIRYELALIAKLEYEPF 341 Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416 FL V D +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ R P Sbjct: 342 FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPP 400 Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476 D D+DF RR+EVI+++ KYG +R A + + + LR+ G+AL + VDR+ Sbjct: 401 DIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVA 460 Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536 K LQ A A P + E++ +L RH S H+ G VI Sbjct: 461 KGHRWFDGSRDLLQQFAST----GLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISR 516 Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------A 590 L++LVP+ V Q++ +E GL+K D L L L+ L ++ D A Sbjct: 517 GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPA 576 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 + G L IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ Sbjct: 577 KDGKPFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIV 636 Query: 651 RPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703 RPGPI V+ K + ++ + +L T GV I+QEQVMQIA + + Sbjct: 637 RPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAA 696 Query: 704 GYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 G++ EAD LRRAM K ++K +++ ISG + ++ A IFE + F +YGF Sbjct: 697 GFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFP 756 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA++A ++Y ++W+K H P FLAA + + + QDA++ ++++P V Sbjct: 757 ESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVT 816 Query: 823 TPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872 + + + L+ ++G+ AR I A PFDS++ R Sbjct: 817 QSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRA 876 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 +L RR LE+L A AL R L + ++ A Sbjct: 877 ---QLERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP- 920 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992 D++ + + + G + HP+ + +P LR + E G Sbjct: 921 --IDEVEQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDG 978 Query: 993 NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 R +V+++Q T KG + ++T + P Sbjct: 979 RLARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017 >gi|229548984|ref|ZP_04437709.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|257421291|ref|ZP_05598281.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98] gi|229306005|gb|EEN72001.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|257163115|gb|EEU93075.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98] gi|315156892|gb|EFU00909.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0043] gi|315157679|gb|EFU01696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0312] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR+ + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELFENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|315165092|gb|EFU09109.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1302] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L +EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|307286902|ref|ZP_07566982.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109] gi|312900994|ref|ZP_07760287.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470] gi|306502027|gb|EFM71314.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109] gi|311291895|gb|EFQ70451.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L +EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|315168074|gb|EFU12091.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1341] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A + + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVAQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|315149565|gb|EFT93581.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0012] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 319/1030 (30%), Positives = 511/1030 (49%), Gaps = 52/1030 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023 SGHP + +K + E V +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQLVHELVG---NQPTKLLIYVKNIRTIRTKKGEQMAFVDGDDT 975 Query: 1024 AKEYEANFFP 1033 FP Sbjct: 976 TGSISLTLFP 985 >gi|329577043|gb|EGG58517.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1109 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +A +LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQAAILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|190892912|ref|YP_001979454.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] gi|190698191|gb|ACE92276.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652] Length = 1087 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 260/1038 (25%), Positives = 458/1038 (44%), Gaps = 72/1038 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV + +S L GA S + + A+ + D N+L + + + A G++ + Sbjct: 3 YAELQVTTHFSFLRGASSADELFATAKELGIDAVGVVDRNSLAGIVRALEASRATGVRLV 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 +GC+LD+ SI++ + Y RL L++ K + Sbjct: 63 VGCRLDLQDGM----------------SILVYPTNRAAYSRLTRLLTLGKGRGG-KDNCI 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189 + L + EGL+ + + +L ++FG+R YV+L R Sbjct: 106 LHLDDVALY-AEGLLGIL------VPDL----PDDTCAVQLRKMSEIFGNRAYVSLALRR 154 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248 R D+ R ++ LA T ++ V TN+ LF + DV+ + ++T + + Sbjct: 155 RPNDQLRLHEISNLAATFKVRTVVTNDVLFHEPGRRQLQDVVTCIRNNTTIDEVGFERER 214 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 D YLK EM + PEAL T+EI RC F L P D Q+ E Sbjct: 215 HADRYLKPPEEMERLLPRYPEALARTMEIVERCKFSLDELTYQYPEEAIVPGMDAQQSLE 274 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + +R + +R +G + + + EL++I MK++ YFL V +++A+ Sbjct: 275 HYVR----ECIPIRYPEGL------PRKVLRAVRHELDLIKEMKYAPYFLTVFSIVKFAR 324 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR+ Sbjct: 325 SQGIL-CQGRGSAANSAICYILGITSIDPETNDLLFERFVSKERDEPPDIDVDFEHERRE 383 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH--P 486 +VI+++ YG ++ A T +AK A+RDVG+AL +P + L + + Sbjct: 384 QVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSWSEELPD 443 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 +++ + + R L L+++++L G RH H G V+ L LVP+ Sbjct: 444 RNIRELNLNPDDRRLALT-------LKLARQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605 D + +++ +E +K D L L LT + K+ D + + DL+ IP +D Sbjct: 497 PATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIRDHKDEDLDLATIPQED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG FQ+ES L ++P+ D++ V++ RPGPI +V+ Sbjct: 557 AATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVIQVAIVRPGPIQGNMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK P ++ +L T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ +SG KNG S A F L F YGF +SHAA++A+I+Y + ++K H Sbjct: 677 GGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYVKCH 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIY 836 +P F AA + + + DA+ +++ P +N D + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAAAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGSGERHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895 + ++G+ A I+ A ++ F+S++D R + L+ L A A Sbjct: 797 LGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAFLPSLK 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R + ++ +++ + + K + + + Sbjct: 854 LQRRDAIWAIKALREAPLPLFAAAAER------EVKVIPEQQEPEVRLRQMTEGHNVVQD 907 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 +G HP+ + L+K I E++ G + A +V+ +Q + KG + Sbjct: 908 YGHVGLTLRDHPITFLRRDLQKRNIVTCSEAMNARDGRWLMAAGLVLVRQMPGSAKG--V 965 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 966 MFITIEDETGPANIVVWP 983 >gi|190410010|ref|YP_001965534.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti] gi|125631040|gb|ABN47041.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti SM11] Length = 1085 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 264/1042 (25%), Positives = 443/1042 (42%), Gaps = 78/1042 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ LQV + +S L GA S + + A A+ + D N+L + + + A G++ Sbjct: 2 SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ S++ Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SVLAYPIDRAAYSRLTRLITLGKSRGG-KNNC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 + + G I V +L ++FGDR YV+L R Sbjct: 105 ILHWDDVAAYN-----------DGMIGILVPDLPDDVCAIQLRKMAEVFGDRAYVSLCLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D+ R ++ LA ++ V TN+ LF + D++ + T + + Sbjct: 154 RRQNDQLRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F P+AL T+EI RRC+F L+ P D Q Sbjct: 214 RHADRYLKPPEEMERLFPRYPQALARTLEIVRRCTFSLEELTYQYPEEAIVPGKDAQASL 273 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 E+ + R +G D + + EL++I MK++ YFL V +++A Sbjct: 274 EHY----VWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +RR Sbjct: 324 RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+++ Y E+ A T +A+ A+RDVG+AL +P + L + Sbjct: 383 EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWAW----- 437 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 S + + R D + L+++Q+L G RH H G V+ L LVP+ Sbjct: 438 SEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606 D + +++ +E +K D L L LT + K+ D + + + DLS I +D Sbjct: 498 ATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSDIEQEDP 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ R Sbjct: 558 ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 + GKE + P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 618 REGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + + K++ +SG +NG + A F L F YGF +SHAA++A+I+Y ++++K HY Sbjct: 678 GVSRFKDKLVSGMVRNGYTPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHY 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837 P F AA + + + DAR +++ P +N D + + + Sbjct: 738 PEAFCAALVNSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGDSGRHAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896 +KG+ I+ A D F S++D R ++ L L A A Sbjct: 798 GFRQVKGLAVAETARIVAARMDNAFASVDDMWRR---SGVSSEALVQLAKADAFLPSMKL 854 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951 R L ++ ++ +FA I ++ Sbjct: 855 ERRDALWAIKALRDE-----------PLPLFAAAAKREMAAIAEQQEPEVALRQMTDGHN 903 Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011 + G HP+ + L I E++ + G + A +V+ +Q + K Sbjct: 904 VIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQMPGSAK 963 Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033 G + ++T + +P Sbjct: 964 G--VMFITIEDETGPANLVVWP 983 >gi|229546892|ref|ZP_04435617.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322] gi|256852698|ref|ZP_05558069.1| DNA polymerase III [Enterococcus faecalis T8] gi|229308057|gb|EEN74044.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322] gi|256712043|gb|EEU27080.1| DNA polymerase III [Enterococcus faecalis T8] gi|315029734|gb|EFT41666.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4000] Length = 1109 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L++E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP +D Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|329846730|ref|ZP_08262003.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] gi|328844237|gb|EGF93805.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] Length = 1075 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 268/1042 (25%), Positives = 454/1042 (43%), Gaps = 77/1042 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P +V LQ S +S L G + +++ + A A+AI D N L + A G++ Sbjct: 2 PDYVELQCASYFSFLRGCSAPDDLFAQAKALGMEALAIADRNTLAGIVRAHVAAKETGVR 61 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIGC+LD+ SI++ GY RL L+S K + Sbjct: 62 LIIGCRLDLTDGM----------------SILVYPVDRAGYGRLCRLLSLGKSRGG-KGA 104 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 + S +++ EGLI + + ++ RL FK++F DR Y+ L Sbjct: 105 CDLEWSDIEDFH-EGLIAI----------FIPDEADELCAVRLRRFKQVFADRAYMALTL 153 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRP 246 RHR D R ++ LA+ H +P V TN+ L+ E HDV+ + + + D Sbjct: 154 RHRQNDHMRLHELSNLAFKHRVPTVVTNDVLYHIHERAMLHDVVTCIRNRCTIDTMGDLR 213 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D +LK+ EM +FSD +A+ T+EIA R F L P Sbjct: 214 HRYADRFLKSPEEMGRLFSDYRQAMARTIEIADRSRFSLAELEYQYPEEKLMSGM----S 269 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 L+ + AG + R +G + L EL++I R+ ++ YFL V +Q+ Sbjct: 270 AIEALKRLSWAGAKWRYPEGV------PDKVIKLLKHELDLIERLDYAPYFLTVNAIVQF 323 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ +I GRGS A S Y L +T +DP R LLFERF++ +R PD D+DF R Sbjct: 324 ARSKDIL-CQGRGSAANSCVCYVLGVTSVDPDRNDLLFERFISEERKEPPDIDVDFEHQR 382 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+++V YG A + + ALRD + L P + L I + + Sbjct: 383 REEVMQWVFKTYGRNHAALTAVVTRFRTRGALRDTLKVLGFPEDTIKTLASSIRHWHSTG 442 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S +D+ D + EI L + R S H G V+ L +LVP+ Sbjct: 443 FS----EEDAAELNLNTKDRRLKLAFEIHLLLLDVPRQLSQHPGGFVLTHDRLDELVPIE 498 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605 D V +++ I+ +K D L L ++ ++++ D L + + +D+S IP +D Sbjct: 499 PARMKDRQVIEWDKDDIDAVKFMKVDCLALGMMSCMKRAFDLLGEHKGIHIDMSCIPPED 558 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 +TY ++ T+G FQ+ES L +P D++ V++ RPGPI +V+ Sbjct: 559 PKTYAMIRNADTIGTFQIESRAQMSMLPRTKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 618 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R G E++ P + +L +T GV ++QEQ M++ + +G++ +AD++RRA K Sbjct: 619 RLEGLEEVTFPTPELAAILGKTLGVPLFQEQAMRVVIVCAGFTAGQADLVRRAQATFKKT 678 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + I+G NG ++ A+ + + L F YGF +SHA ++A+IS +AWMK H Sbjct: 679 GGIGPLAQDIINGMKGNGYTEEFALTLVKQLEGFGSYGFPESHAFSFAIISEASAWMKCH 738 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIY 836 +P FLAA + + + +DA+ +++ VN D + + Sbjct: 739 HPDVFLAAILNSQPMGFYAPGQLIRDAKLHGVEVRWFCVNNSRWDCSLEPTERPGRFAVR 798 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895 +KG+ + ++ D P+ S+ D R + L L A + F Sbjct: 799 LGYRLVKGIRSQEIAEMILRRGDLPYKSVPDLWRRAKTPV---ATLRKLARADVFEQAFK 855 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSV--ENSSV 950 SR + L S+ ++ A +F E G +I Sbjct: 856 VSRREALFSIRALRDDA-----------LPLFDSLLDETGRSLSEIDQPDMDFKRMTDGA 904 Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010 + +GF HP+ + L++ I E++ + +++A MV +Q+ + Sbjct: 905 EVVEDYNQVGFTKGSHPVAFLRADLKERSIITCREAMTSKDKRYVQVAGMVNVRQRPGSA 964 Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032 G + ++T + + + + Sbjct: 965 NG--VIFMTIEDESGDANIVVW 984 >gi|300693740|ref|YP_003749713.1| DNA polymerase iii, alpha subunit [Ralstonia solanacearum PSI07] gi|299075777|emb|CBJ35082.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07] Length = 1075 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 259/1073 (24%), Positives = 430/1073 (40%), Gaps = 111/1073 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA + ++++ A A+A+TD ++ + A AG+ Sbjct: 12 PDYAELHCISNFTFLTGASHPHELVERAKALGYQALALTDECSVAGTVRAHMAAKEAGLT 71 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + +VLL +GY L E +++ L K Sbjct: 72 LIIGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 119 Query: 129 VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183 R+ L GL L G + + + + +++FGDRL Sbjct: 120 YRLLADDLAA-PAGGLAHLRGMPQCLAILLPDY--DPDPRHLLAQAQWCRQVFGDRLSMA 176 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + L DR+R V ++ ++P+VAT + S + HDVL A+ S +++ Sbjct: 177 LELPLRHADDRHR-GTVSAVSDQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 235 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ F L +VE+A C F L P + E Sbjct: 236 GLELAPSAEQAMRTRMQLAFFYQGERGAKVLRRSVELASLCDFSLDEVEYAYPHEVVPEG 295 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + +AG E R + A + ++ EL +IA +++ +FL V Sbjct: 296 ----QTPAGYLHAEVMAGAERRYGKDVPA------KVQAQIVEELALIAELRYEPFFLTV 345 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +++A+ I GRGS A S Y L IT+++P + LF RFL+ R PD D+ Sbjct: 346 YDVVRFARSQGIL-CQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDV 404 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR+EVI+Y+ KYG R A + + ++ALRDVGRAL + ++++ K Sbjct: 405 DFEHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 464 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 A + + P V R + +L G RH S H G VI LS Sbjct: 465 WWDGK----HEFAQRAGQQGLDPESPLVQRWAGLIGQLRGFPRHLSQHVGGFVIAQGKLS 520 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593 +LVP+ + V Q++ +E L+K D L L LT ++++LD A G Sbjct: 521 RLVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYG 580 Query: 594 VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 L++ D +TY +++ T+G+FQ+ES + L ++P D++ V++ R Sbjct: 581 APDKLAMQHLPDEDPDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 640 Query: 652 PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGPI +V+ + + + P + +L+ T GV I+QEQVM+IA G Sbjct: 641 PGPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGG 700 Query: 705 YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 ++ EAD LRR M K+ Q + + FA+YGF Sbjct: 701 FTADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFP 760 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA +A ++Y ++++K H P F AA + + + Q+AR+ ++++P V Sbjct: 761 ESHAAGFARLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 820 Query: 823 TPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 D + G I L+ I+G+ A I+ A PF S+ED R Sbjct: 821 ASAWDSTLHARPDGEGGQPDIRLGLSRIRGMRPPAAERIVATRAQAPFSSVEDLAHRA-- 878 Query: 875 KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920 ALD R Q L +Q+ Q Sbjct: 879 ---------------ALDRHDLSVLAAANALLSLAGHRRQALWQTLALQEPGQDHA---- 919 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + + + + + + LG HPL + +P L +M Sbjct: 920 -----LLRGARPVEAPLV----LPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 970 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G R +V +Q+ T KG+ +V+ + +P Sbjct: 971 VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1021 >gi|329851038|ref|ZP_08265795.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] gi|328839884|gb|EGF89456.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19] Length = 1069 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 265/1036 (25%), Positives = 455/1036 (43%), Gaps = 78/1036 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +++ LQV + +S L GA S + + A A+ + D N+L ++ + A A G++ Sbjct: 2 TYIELQVTTHFSFLRGASSPEELFHRAAELGIEALGVVDRNSLAGIVQAHKWAKATGVRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+GC+LD+ S+++ + Y L L+S GK Sbjct: 62 IVGCRLDLVDG----------------ASLLVYPTDKAAYSHLCRLLSLGKGR-AGKGKC 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188 ++ + ++ GLI + A L +FGDR Y+ L R Sbjct: 105 QLDWNDVEAWNA-GLIAVLVPDMADDTCALN----------LRRLATIFGDRAYLALTLR 153 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247 R D R ++ Q+A +P VATN+ L+ DV+ + H+ + + R Sbjct: 154 RRPNDALRLYELTQIAVKLGVPTVATNDVLYHDASRRILQDVVTCIRHNCTIDEAGFRRE 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 D YLK EM +F P+A+ T EIA RC F ++ E Sbjct: 214 RHADRYLKPGDEMARLFKAYPDAVARTQEIAARCRFDMKELEY----QYPDEKSHPHLTP 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + L G R G ++L EL++IA M ++ YFL V D + +A Sbjct: 270 QQALEKFVRIGAAKRYPDGV------PDKVEKQLRHELDLIAEMGYANYFLTVHDIVHFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S Y L IT++DP ++ LLF RFL+ +R PD D+DF RR Sbjct: 324 RSQDIL-CQGRGSAANSSVCYVLGITELDPAKYDLLFARFLSKNRNEPPDIDVDFEHARR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 + V+++V + YG + A + + + ALRDVG+AL +P + L + + A + Sbjct: 383 EIVMQWVFDTYGRDHAALVAVVTRYRIRGALRDVGKALGVPEDVLKVLAQQYRHW-ATEL 441 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + R+AR + L+++++L RH S H G V+ L L + Sbjct: 442 DETHLEGLNLNRDAR----RIRLTLDLTRQLVNAPRHLSQHPGGFVLTRDRLDDLAVIEP 497 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 + V +++ I++ +K D L L LT ++KS D LA+ V +D++ IP DD Sbjct: 498 AAMKNRQVIEWDKDDIDELKFMKVDCLALGMLTCMKKSYDMLAEHKGVAMDMAGIPADDK 557 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664 TY ++ T+G+FQ+ES L ++P DI V++ RPGPI +V+ R Sbjct: 558 PTYAMICKADTVGVFQIESRAQMSMLPRLRPANFYDIAIEVAIVRPGPIQGDMVHPYLRR 617 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723 K+G E I + + +L T GV ++QE M++A + +G+S EAD +RR++ Sbjct: 618 KHGLEPIEYPNEAVRDILGRTFGVPLFQEHAMKVAVVCAGFSDDEADHVRRSLATFKHTG 677 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 + +++ +G G S + + L F YGF +SHA ++A+I+Y ++WMK H+ Sbjct: 678 GVKNFRDKMYAGMIGRGYSPEFSERLINQLEGFGSYGFPESHAISFALIAYASSWMKCHH 737 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYY 837 P FL A + + + +DAR+ + + P VN D + + + Sbjct: 738 PDVFLCALLNSQPMGFYAPAQLVRDAREHGVDVRPVCVNASRYDCTLEETGTPGKLAVRL 797 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA-LDCFGY 896 IKG+ A ++ A ++ + S+ + L L L A A G Sbjct: 798 GFRMIKGMSEDEAAVLVAAREER-YGSIREVWR---HSGLPVSTLVRLAEADAFFPSLGQ 853 Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956 SR + L +L ++ +F + T + L+ + + + Sbjct: 854 SRREALWALKGMRDT-----------PLPLFDGPE-THEPAVVLKAMTAGSE---VVQDY 898 Query: 957 RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016 +G HP+ + L + GI + + A ++ +A MV+ +Q+ T KG + Sbjct: 899 GHVGLSLRRHPVSFLRGELSERGIVTCKAANARKDKSHALVAGMVLVRQRPGTAKG--VT 956 Query: 1017 WVTFSEPAKEYEANFF 1032 ++T + + Sbjct: 957 FMTIEDETGIANVVIW 972 >gi|115352937|ref|YP_774776.1| error-prone DNA polymerase [Burkholderia ambifaria AMMD] gi|115282925|gb|ABI88442.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD] Length = 1071 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 271/1055 (25%), Positives = 443/1055 (41%), Gaps = 76/1055 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA ++++ A IAITD +L A A A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ + G P P +VLL EGY L EL+S + K + Sbjct: 69 LIVGSFFEVTPDE----VTPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 123 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L + + + + V + ++ F+ FG R + L Sbjct: 124 YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGARARLGL 181 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q R D + ++ + +VA + DV+ A+ V Sbjct: 182 VQLQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPV----- 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302 + Y + + + A + E IL L + D Sbjct: 237 ---SECGYALAPNAEQHLRARGRIAKLFSPEELDETCAILDACDFKLDSLQYEYPDEIVP 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L + AG R QG + +++ +EL++IAR+ + +FL V D Sbjct: 294 KGLTPTRHLEQETFAGAAARYPQG------IPEKVERQIRYELDLIARLSYEPFFLTVYD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ +R PD D+DF Sbjct: 348 IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+++ KYGH+R A + + + LR+ G+AL + VDR+ K Sbjct: 407 EHQRREEVIQHIYKKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWF 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 LQ A A P + E++ +L RH S H+ G VI L++L Sbjct: 467 DGSRDLLQQFAST----GLDPATPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596 VP+ V Q++ +E GL+K D L L L+ L ++ D + G Sbjct: 523 VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPF 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ RPGPI Sbjct: 583 TLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQ 642 Query: 657 NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 V+ K + +I + +L+ T GV I+QEQVMQIA + +G++ E Sbjct: 643 GGAVHPYLKRRRIQAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAIVAAGFTPGE 702 Query: 710 ADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD LRRAM + ++ ++G + G ++ A IFE + F +YGF +SHAA+ Sbjct: 703 ADRLRRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAAS 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 +A ++Y ++W+K H P FLAA + + + QDA++ +Q++P V + Sbjct: 763 FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEA 822 Query: 829 KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 + + L+ ++G+G AR I A A PFD+++ R +L Sbjct: 823 SLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRA---QLE 879 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RR LE+L A AL R L + ++ A D+ Sbjct: 880 RRDLEALAAANALVTLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEP 924 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + + + G + HP+ + +P LR + E G R Sbjct: 925 EKPALGAPSEADDILADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRDRSDGRLARAC 984 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V ++Q T KG + ++T + P Sbjct: 985 GIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017 >gi|124266725|ref|YP_001020729.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1] gi|124259500|gb|ABM94494.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1] Length = 1099 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 262/1070 (24%), Positives = 428/1070 (40%), Gaps = 100/1070 (9%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AA 65 P++ L S++S L GA ++++ A AIAITD ++ + Sbjct: 28 PAYAELHCRSNFSFLTGASHPQELVERAAQLGYAAIAITDECSVAGVVRAHAALKRLREN 87 Query: 66 GIQP----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121 G P IIG + + +P +VLL EGY ++ L++ Sbjct: 88 GNPPLPALIIGSEFTLA-----------ASPTAPGCRLVLLAKNREGYAQICGLITLGRG 136 Query: 122 LDQGKQSVRICLSWLQEI-----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176 K ++ + L + G+ + I R + Sbjct: 137 RSA-KGHYQLSVDDLDALLAGQGHAAGV---PDCLALLIPR--RDEPHATLLAQARWLAG 190 Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235 G+R + ++ R D +++ + LPL A + L D L A+ Sbjct: 191 RCGERASIAVELLRWADDESFVERLLDASAASGLPLAAAGDVLMHVRSRKPLQDTLTAIR 250 Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 + + RS + PE L+ +V++AR C F L+ P Sbjct: 251 LKR-RVADCGYALMRNAEQHLRSRLALAQLCRPEWLQRSVDLARACDFSLEQLKYEYPDE 309 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 I + + LR G VR G + +++ E +I R ++ Sbjct: 310 IVPAGE----TASSHLRRLTEEGACVRYPGGVPGM------VQAQIEHEFALIFRKRYEA 359 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 +FL V D +++A+ I GRGS A S Y L IT++DP + LLFERF++ +R Sbjct: 360 FFLTVHDVVRFARSEGIL-CQGRGSAANSAVCYCLGITEVDPTQTPLLFERFISEERGEA 418 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF +RR+EVI+Y+ KYG R A + + + A+R+VG+AL + ++DRL Sbjct: 419 PDIDVDFEHERREEVIQYIYGKYGTHRTALAAALATYRVRGAVREVGKALGLDGQRIDRL 478 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 K H + + P + L +S L G RH S H G VI Sbjct: 479 AKSHQWFDGHEALPARLVE----AGFDPDAPVTRQWLALSAALIGFPRHLSQHVGGFVIA 534 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-- 593 LS+LVP+ D V Q++ +E GL+K D L L L+ L+++L + Sbjct: 535 RDALSRLVPIENAAMKDRRVIQWDKDDLESLGLLKVDVLALGMLSALKRALALITDWRGP 594 Query: 594 -----------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642 + IP DD TY ++ T+G+FQ+ES + L ++P D Sbjct: 595 PPGANGGAPISPSWRMQDIPRDDIATYEMIQEADTVGVFQIESRAQQSMLPRLKPSEFYD 654 Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQ 697 ++ V++ RPGPI +V+ K + +P ++ L+ T GV I+QEQVMQ Sbjct: 655 LVVQVAIVRPGPISGGMVHPYLKQRDLQRRGLRPPPAYPALEQALERTLGVPIFQEQVMQ 714 Query: 698 IAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756 I + + +S +AD LRRAM K + + +R + + + A IF+ + F Sbjct: 715 ICMIAADFSGGDADELRRAMAAWKRKGGLQQFHQRIVGRMVEKNYDREFAERIFQQIKGF 774 Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816 +YGF +SHA ++A+++Y +AW+K H P FLAA + + + QDAR+ +++ Sbjct: 775 GEYGFPESHAYSFALLAYLSAWLKCHEPAIFLAALLNSQPMGFYAPSQLVQDARRHAVEV 834 Query: 817 MPPSVNTPCVDFKVG--------------DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 P V D + + L + G A I+ A A F Sbjct: 835 RPVDVGHSGWDCTLEPASPGSTPCAARSLQPAVRLGLRLVSGFSEAAADRIVAARAVSTF 894 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 SL+D R L+ + L+ L A AL R Q + Sbjct: 895 ASLDDLARRA---GLDPQALQVLARADALQSLAGHRRQQAWH---------------ASG 936 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 A G + L + + HPL + +P L + G + Sbjct: 937 QPRRTALLAGATHREDPLV-LPAPPEAEEITLDYASTQLTLRRHPLALLRPRLVQRGWRN 995 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 E A G + +VV +QQ +T KG+ +VT + + Sbjct: 996 ARELGALKDGCRVWACGIVVGRQQPETAKGT--IFVTLEDETGSVNVIVW 1043 >gi|307289993|ref|ZP_07569918.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411] gi|306498951|gb|EFM68444.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411] Length = 1109 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 318/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L++E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQILQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP +D Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|224476792|ref|YP_002634398.1| DNA polymerase III subunit alpha [Staphylococcus carnosus subsp. carnosus TM300] gi|222421399|emb|CAL28213.1| DNA polymerase III alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1067 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 342/1024 (33%), Positives = 537/1024 (52%), Gaps = 78/1024 (7%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 HL +H++Y LL +L + +I+ K + +AITDTN L + +F + AGI+P+ Sbjct: 3 AHLNIHTAYDLLNSSLKVPDIIQKAVQEGYETLAITDTNVLHAVPQFYDASIKAGIKPVF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G + + T VLL G + L +L S + + + Sbjct: 63 GMTIYLSDGLTELET-------------VLLAKNEAGLKSLYQLSSAIKVQE----KYAT 105 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191 + WL++ +I F N + + F+K Sbjct: 106 PIEWLKKYQDNLVI-------------IFKNVTSEQLNLVHHFEKH-------------- 138 Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251 D Y + Q A +L +V + +L+ ED + L A+ + + + Sbjct: 139 PDLYVDHQSSGAAERLDLNMVYMQEARYLNAEDADTLSALNAIKDNQTIDLVNTGSNHHA 198 Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311 H+ S + +ENT +A C+ ++ H P+LP++ + + L Sbjct: 199 HFYTQNEVNDLGLS--ADVIENTETLAELCTTEIEYHQPLLPQYQTPD----NSSSKTYL 252 Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371 + LE + YR+RL++E N+I M + YFLIV+D I +AK +N Sbjct: 253 WHLLEQSLEKMEFDQS--------QYRERLEYEFNIITEMGYEDYFLIVSDLIHYAKTHN 304 Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431 + VGPGRGS AGS+ +Y L IT IDPLR++LLFERFLNP+R++MPD DIDF RR++VI Sbjct: 305 VMVGPGRGSSAGSLVSYLLNITTIDPLRYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 364 Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491 +YVQ KYG V+ I+TFG L AKA RDVGR + S + + KLIP+ +S Sbjct: 365 QYVQEKYGDYHVSGIVTFGHLLAKAVARDVGRIMGFEESTLSEISKLIPSKLGITLSEAY 424 Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551 + F+E + ++ E+S+KLEGL RH STHAAGI+I DRPL + VP++ Sbjct: 425 --QNESFKEFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDRPLYEHVPLFMGDTG 482 Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610 +TQ+ M EK GL+K DFLGLK L+++ + +D + + V +D+ IPFDD + + Sbjct: 483 --LLTQWTMTEDEKLGLLKIDFLGLKNLSIIHQIIDQVKKDLNVSIDIEAIPFDDPKVFE 540 Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670 +L+ T G+FQLES G+RQAL+ +QP EDI+A+ SLYRPGP++ I Y R++ K Sbjct: 541 MLSRGDTTGLFQLESDGVRQALKRLQPQHFEDIVAMTSLYRPGPMEEIPTYITRRHVPSK 600 Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730 + +HP ++P+LK T GVIIYQEQ+MQIA +G+S EAD+LRRAM KK + ++ +++ Sbjct: 601 VQYLHPDLEPILKNTYGVIIYQEQIMQIASKFAGFSYGEADILRRAMSKKNRAMLENERQ 660 Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790 F+ GA++NG S+ ++ IF+L+ KFADYGF ++HA +Y+ I+Y A++K HYP F A Sbjct: 661 HFVDGANQNGYSEQLSKQIFDLILKFADYGFPRAHAVSYSKIAYTMAYLKVHYPNYFYAN 720 Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850 +T + N +K + +A+ N++I+PP +N ++ IY SL A+KGVG + Sbjct: 721 ILTNSIGNDKKTELMVTEAKSMNLKILPPDINESHWYYRATSKGIYLSLGAVKGVGYQSV 780 Query: 851 RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 + I+E + + D R+ ++ R++LESL+ GA D F +R LL +LD + Sbjct: 781 KAIVEERYENGKYKDFFDLTRRLPNRVKTRKLLESLILVGAFDQFNENRATLLSTLDQVL 840 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 A VE++ +F + K + + V + E+ LGFY S HP++ Sbjct: 841 DGASNVEQDEL-----LFEF----VTPKESYQAKEELPDKVLSDFEKEHLGFYISKHPVE 891 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 I + G + I + + + +T+ G + +VT ++ K + Sbjct: 892 ---KIFENKQLLGIYKLSNAKNNQPILV--QIDKMNRIRTKNGQPMAFVTLNDGTKTLDG 946 Query: 1030 NFFP 1033 FP Sbjct: 947 VIFP 950 >gi|226525340|gb|ACO70937.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia bacterium] Length = 1040 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 278/1032 (26%), Positives = 468/1032 (45%), Gaps = 68/1032 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 ++V L S+ S L GA +++ + A + PA+A+ D + ++ + + G++ Sbjct: 12 TYVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGVRA 71 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G +L ++ Q + +LV+T GY+ L ++++R L + Sbjct: 72 IVGAELTMEDQSV----------------VPVLVATRTGYRNLCQMITRAKLRGTKLDAP 115 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188 + L E +EGL+ LTG GP+ RA A + FG ++V +QR Sbjct: 116 -VRWDELGEF-SEGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEIQR 173 Query: 189 H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H + + LA LPL+ATN L + E+ DV H T + R Sbjct: 174 HLHRGEERENDALADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGRHL 233 Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + +LK+ + M +F++ PEA+ NT +A R F L+ P+F + Sbjct: 234 AYNAERHLKSPARMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGE----T 289 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ L ++ + G R +L EL +I R+ FSGYFLIV D + + Sbjct: 290 MDSVLYHRTMEGARNRYP-------AMTPKVLDQLHKELELITRLGFSGYFLIVWDLVNF 342 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ-D 425 + +NI + GRGS A S YAL IT DP+ +LLFERFL+ R + PD D+D D Sbjct: 343 CRNDNILI-QGRGSAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPSGD 401 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+ VI+ V +YG A + + ++A+R++G+AL ++R +L + Sbjct: 402 RRERVIQEVYRRYGRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLF----GN 457 Query: 486 PVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543 + ++ REA P +E+ +K+ GL RH H+ G++I LS +V Sbjct: 458 GDFPHTMDLSAQLREAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELSSVV 517 Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603 P+ V Q++ G+IK D LGL + +Q SL+ R VDL+ +P Sbjct: 518 PLENASMPGRVVAQWDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQARDRPVDLATMPM 577 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVY 661 DD TY L+ T+G FQ+ES L ++P D++ V++ RPGPI Y Sbjct: 578 DDPATYDLMCRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLLHPY 637 Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R GKE + IHP + P+L+ T GV ++QEQ++++A +++ +S SEA+ LRRA+ Sbjct: 638 LARHAGKEDVEYIHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALSFHR 697 Query: 722 -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 +E MD+ + +G + G+ I I FA YGF +SHA ++A+I+Y + WMK Sbjct: 698 SQERMDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASCWMK 757 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839 H EF A + + +DA++ ++ SV VGD+ + L Sbjct: 758 VHRAPEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLRLGL 817 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 ++G+ I+ K F+SL DF R + + L +L GAL+ R Sbjct: 818 CYVRGLTKEDGERIVAERQRKSFESLMDFQLRT---AVPKPALRTLAKIGALNGLSEHRR 874 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 ++ ++ +++FA E + L + R + Sbjct: 875 AAQWEVEIRREE------------DDLFARE----IREEELP-LKPMDPFERVRADYAGT 917 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 HP+ + + L + + + G + + MV+ +Q+ T KG + +V+ Sbjct: 918 SLTTGPHPMALVRDRLPDL--WRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VVFVS 973 Query: 1020 FSEPAKEYEANF 1031 + + A Sbjct: 974 LEDESGVANAIV 985 >gi|171910611|ref|ZP_02926081.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM 4136] Length = 1032 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 287/1032 (27%), Positives = 482/1032 (46%), Gaps = 66/1032 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SFV L +++S L GA S ++ + A +AITD + + + K G++ Sbjct: 2 SFVELHARTAFSFLRGASSPEEMMTRAADLGMDCVAITDRDGYYGSARAHYKGKELGLRA 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I G ++ ++ + + LLV+T +GYQ L L++R L K Sbjct: 62 ITGMEITMEDETV----------------LPLLVATRQGYQNLARLMTRAKLRT-TKGQS 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188 R+ S L E EG+++L+G GP+ RA N + A + ++FG +++ LQR Sbjct: 105 RVLWSELPE-HAEGVVVLSGDEEGPVQRALQQN-AAEAPAVVEKLCRIFGRNQVWMELQR 162 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246 HR + R Q+ LA +LPL+A+N +E D + H T + + Sbjct: 163 HRMRGETLRNRQIRDLAELCKLPLLASNGPCHARQEGRMLMDAFTCLRHHTHLDAAGLLL 222 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 +LKN +M ++F+DLPEA++NT ++ + F L+ P + D Sbjct: 223 APNSQRHLKNHGDMKALFADLPEAMDNTRRLSDQLEFGLEHLGYEFPCYDVPPGHDQ--- 279 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 ++ LR G R G A+ R +L+ EL++I+R+KFSGYFLIV +++ Sbjct: 280 -DSYLRELTYEGARRRFHGGVNAQ------VRAQLEKELDLISRLKFSGYFLIVWSLVKY 332 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ-D 425 A ++I V GRGS A S Y+L IT DP+ LLFERFL+ R S PD D+D D Sbjct: 333 ACDSDILV-QGRGSAANSAVCYSLGITHADPIAGKLLFERFLSEGRNSWPDIDLDLPSGD 391 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR++VI+ + +Y A + + ++A+R++G+ L +P + R L N Sbjct: 392 RREQVIQELYRRYAPYGAAMTANVITYRGRSAMREMGKVLNLPEDVMGRFSDLYAN--GD 449 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 + D R + P + ++ + ++ GL RH H+ G+V+ + L +VP+ Sbjct: 450 FPHTLQLKDQIRQAGLPMDHPRLVAMVRLYHQVYGLPRHLGQHSGGMVLCTKGLDSIVPL 509 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPF 603 V Q++ E G+IK D LGL + +LQ SL RG L IP Sbjct: 510 EPATMPGRVVVQWDKDDCEDLGIIKVDLLGLGMMAVLQDSLTLCKARGREGPYGLHEIPK 569 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 DD TY ++ T+G+FQ+ES L ++P+C D++ V++ RPGPI +V+ Sbjct: 570 DDPATYEMMQKADTIGVFQIESRAQMATLPRLKPECFYDLVIEVAIIRPGPIVGNMVHPY 629 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R+ G+EKI IH + +L+ T GV ++QEQ++++A +++G+S EA+ LRRAM Sbjct: 630 IRRRQGREKIDFIHAEFEDILQRTLGVPLFQEQLLRMAMVIAGFSGGEAEELRRAMSFHR 689 Query: 722 K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 E M K ++ + + G+++ + I ++ FA YGF +SHA ++A+++ + W+K Sbjct: 690 SEERMHKVMDKLRAAMEERGVAQEVQEKITACISSFALYGFPESHAISFAILANASVWLK 749 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839 H VEF A + + +DA+Q ++I P V V V D++ + L Sbjct: 750 AHRAVEFYAGLLNNQPMGFYSTSTLVRDAKQHGLRIRPACVVVSDVLCTVEDDQTLRLGL 809 Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899 +G+ + I+ A +P+ L+DF R K RRV L AGAL+ G R Sbjct: 810 NQFRGLSRGSQERIIAERAVRPWRDLDDFLRRSGLDKKERRV---LAKAGALNQLGLHRR 866 Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959 L ++ ++ + +F N+ R + + Sbjct: 867 SALWQVELARQEEDLFTPREVQQEMPLF-----------------PMNAMERLNADYQTQ 909 Query: 960 GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019 HP+ ++ L + E G I + +V+ +Q+ T KG +++ Sbjct: 910 RLTTGPHPMAHHRVRLPHL--WPACELANGRHGQRIFVGGLVICRQRPGTAKGHM--FIS 965 Query: 1020 FSEPAKEYEANF 1031 + A Sbjct: 966 LEDETGIANAFV 977 >gi|300087544|ref|YP_003758066.1| DNA polymerase III subunit alpha [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527277|gb|ADJ25745.1| DNA polymerase III, alpha subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1045 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 269/1047 (25%), Positives = 471/1047 (44%), Gaps = 77/1047 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ L HS YS +GA SL ++ + A+AITD +NL A+ FS + + + Sbjct: 2 SYAELHCHSYYSFHDGASSLEELITRSGELGYRALAITDHDNLCGAMRFSHLSRSMNLSG 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG ++ ++ + LL EGY+ L L++ + + S Sbjct: 62 IIGAEVTVE----------------GGYHLTLLAENQEGYRNLCRLITLGH-ETGERNSP 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188 +I + L GLI L+G G + + A + + +++ FG D ++ LQ Sbjct: 105 QIPSARLAA-HAAGLIALSGCPRGELSLLATAGCDERARQLVRQYQEWFGSDNYFIELQN 163 Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246 + + D R ++V+LA P+VAT N+ + E + D L+AV ++ + Sbjct: 164 NLVFGDAERNRRLVRLAGETGAPVVATGNAHYHLRERHRLQDCLVAVRSCKSLEACHHER 223 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 R + +L+ +E+ + F+ PEA+ NTV IARRC F L + Sbjct: 224 RPNSEFHLRPLAEIEARFAGCPEAVANTVRIARRCEFNLTAQSGYDLP---DYPAPAGFT 280 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 E+ L + G R+RLD E ++AR + +G+ L+ D I+ Sbjct: 281 PESYLEKLCLE-------AAVRRYGSITAAVRERLDQEFRLVARHRLAGFLLLYHDVIRL 333 Query: 367 AKKNN--------------IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412 ++ P G GRGS + Y + ++ IDPL++ L ERFL D Sbjct: 334 GREIMVEQGLTTADVPLEENPPGRGRGSSVSLLIGYLIGLSHIDPLKYGLSLERFLPEDA 393 Query: 413 -MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 +PD D+DF + R+E+I K+G + A T + Q K A+RD+G+ L +P + Sbjct: 394 LGCVPDIDLDFPRSIREELILRTHRKWGWKYAALTGTIATYQIKGAVRDLGKVLSLPPEE 453 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VD+L + + A + + ++ SRFR+ A P L+ ++ +L+G ++ H G Sbjct: 454 VDQLARYVEWGSAAKLK-EKMSRASRFRDRVDA-PGWRDLIALAAELDGFPKYLGQHPGG 511 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591 ++I PL+ +VP+ R + V Q++ I+ AG +K DFL L L+ +Q++++ + + Sbjct: 512 MIISSVPLTDIVPVQRGAMAGRYVCQWDKDSIDDAGCVKIDFLALGALSQMQEAVELIRR 571 Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 R +D+S I F D Y +L T+GIFQ+ES+ Q + ++P + D+ V Sbjct: 572 RTGRFIDMSRIDFADPAVYDMLCRGDTIGIFQVESAAQMQTITRLKPRNLLDMAHEVGAV 631 Query: 651 RPGPIDNIVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPG N V ++ +V H L L+ T G++++Q+QV Q+A ++G S S Sbjct: 632 RPGVGVNGGVQEYLARRAGRKPVVYNHSLERRALERTLGIVLFQDQVNQLAIDVAGLSPS 691 Query: 709 EADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 AD LRRA + +E + + F+SGA++ G+ + A ++ Y F +SHA Sbjct: 692 VADQLRRAFSRRHNQEMLSRYHRMFMSGAAERGVGVSAAEAVWRKF--NGQYMFPESHAF 749 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 A+ V +YQ +W+K +YP+EF A + ++ +DA + I + P +N Sbjct: 750 AFGVTAYQASWLKLYYPLEFYVAIFNQQPMGFYNLETLKEDAGRHGIGVKGPDINLSAAG 809 Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886 + + I + G+G + A I+ A + + DF R + + +L Sbjct: 810 CTIDEGAIRLGFRQVTGLGQSAAEAIVSARTRGGDYRDVGDFLER---SGVLQETALALA 866 Query: 887 FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946 AGA D +R Q+ + + +F D + LE Sbjct: 867 GAGAFDSLESNRRQVKWEIGLRYRPVNSQ----------LF-LPLPVRQDMVELENPGHW 915 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + + E R+LG + +GH + +P + E A G + A +V+ +Q+ Sbjct: 916 ---EKMQEEYRILGLFPAGHIMAGLRPRF-GGSVSTSREITAMKDGAEVTTAGLVIRRQR 971 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033 ++ ++T + FP Sbjct: 972 PH----RKVVFITLEDEFGHIPLMVFP 994 >gi|315038186|ref|YP_004031754.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112] gi|312276319|gb|ADQ58959.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112] Length = 1035 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 326/1024 (31%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 Q+ ++ G +++ T GY L+ L S + L + G+ + Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F + Q+ L KK+ D Y+ + + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251 + V L+ +LPLVA +S +L D L A+ + + Sbjct: 174 -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 233 HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL +I +M F YFLIV D I + + Sbjct: 289 YLHYLAQTGLQARFGQ-----EKIPAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 344 VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 464 QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNGKE Sbjct: 583 ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+ +SL EAD+LRRAM KK ++ ++++K Sbjct: 643 PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILARFSLGEADILRRAMSKKKQDVIEQEK 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 703 SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 763 AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 821 AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + + E E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + G + ++S ++ +T+ + + F++ + + E Sbjct: 929 AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 IIFP 989 >gi|78067625|ref|YP_370394.1| error-prone DNA polymerase [Burkholderia sp. 383] gi|77968370|gb|ABB09750.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383] Length = 1068 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 261/1049 (24%), Positives = 430/1049 (40%), Gaps = 67/1049 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA ++++ IAITD +L A A A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASHAEELVERAFELGYRGIAITDECSLAGAPRMHVAAKAKGLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG D+ + G P P +VLL EGY L EL+S + K + Sbjct: 69 LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 123 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 ++ L E L + + + + V + ++ F+ FG+R + L Sbjct: 124 YQLTSRMLSAPPAEFAHLRGIPDCFAILVPTY--PVRADVLDAQVAWFRTTFGERARLGL 181 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q R D + ++ + +VA + E DV+ A+ Sbjct: 182 VQLQRALDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKELQDVMTAIRVGMP-----V 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305 + +E L E Sbjct: 237 SECGYALAPNAEQHLRGRNRIGNLYSPAEIEETCTILDTCDFKLDTLRYEYPDEIVPKGL 296 Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365 + L + +AG R QG + +++ +EL++IA++ + +FL V D ++ Sbjct: 297 TPTSYLEQETMAGAATRYPQGV------PEKVSKQIRYELDLIAQLSYEPFFLTVYDIVK 350 Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425 +A+ NI GRGS A SV + L IT+++P + ++LFERF++ +R PD D+DF Sbjct: 351 YARSQNIL-CQGRGSAANSVVCFCLGITEVNPEQSTMLFERFISAERGEPPDIDVDFEHQ 409 Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485 RR+EVI+++ KYGH R A + + + LR+ G+AL + VDR+ K Sbjct: 410 RREEVIQHIYEKYGHNRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGS 469 Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545 LQ + P + ++ +L RH S H+ G VI L++LVP+ Sbjct: 470 RDLLQQFSTI----GLDPETPLILAWARLAARLLNFPRHLSQHSGGFVISRGKLTRLVPV 525 Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598 V Q++ +E GL+K D L L L+ L ++ D L Sbjct: 526 ENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPPEPDGEPFTL 585 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656 IP DD TY ++ T+G+FQ+ES L ++P D++ V++ RPGPI Sbjct: 586 KHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPQTYYDLVIEVAIVRPGPIQGG 645 Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716 + Y R+ G EK+ + P L+ T GV I+QEQVMQIA + +G++ EAD LRRA Sbjct: 646 AVHPYLKRRQGIEKVSYPKEELKPALERTYGVPIFQEQVMQIAMIAAGFTPGEADQLRRA 705 Query: 717 MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775 M K +++ + + G + A IFE + F DYGF +SHAA++A ++Y Sbjct: 706 MAAWKRKGNLEQYHRKIVDGMRERDYPPDFAEQIFEQIKGFGDYGFPESHAASFAKLAYA 765 Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831 ++W+K H P FLAA + + + QDA++ +Q++P V D + Sbjct: 766 SSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTQSNWDASLEALPD 825 Query: 832 ------DNRIYYSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884 + L+ ++G+G R +A PFD+++ R +L RR LE+ Sbjct: 826 QPPPHGQPAVRLGLSLVRGLGEAAARRIEAARTAAGPFDTVDTLARRA---QLERRDLEA 882 Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944 L A AL R L + ++ A ++K Sbjct: 883 LAAANALATLAGHRRDALW------------QAVAAAPERDLLATAPIDEAEK---PALG 927 Query: 945 VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004 + + + G HP+ + +P LR + E G R +V ++ Sbjct: 928 APSEADDILADYHTTGLTLDRHPVALLRPELRARRLSSAAELHDRPDGRLARACGLVTAR 987 Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 Q T KG + ++T + P Sbjct: 988 QMPGTAKG--VMFMTLEDETGCVNLIVRP 1014 >gi|255532292|ref|YP_003092664.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366] gi|255345276|gb|ACU04602.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366] Length = 1045 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 254/1035 (24%), Positives = 442/1035 (42%), Gaps = 71/1035 (6%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + LQV S++S L GA + ++++ AA IAITD N L + A G+ I Sbjct: 3 YTELQVTSNFSFLRGASHPDEMVEQAAAYGYSKIAITDRNTLAGIVRAHVAAKKIGMSII 62 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 C+ D+ PS++ + + Y RL L++ L + K S Sbjct: 63 PACRFDLIDG----------------PSLLAYPTDRDAYSRLSGLLTTGNLRAE-KGSCH 105 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189 + + E +G+ + + R F+ + +K L +++ G +Y+ R + Sbjct: 106 LYKKDVYE-HAKGIKFIVVPPASLNTR---FDFEESFKKALAEYREALGSDVYLGAMRLY 161 Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248 G D + ++ QLA ++P+VATN+ + + E D+L V + Sbjct: 162 NGDDMKQLYRLSQLAKLLDMPMVATNDVHYHEPKRRELQDILTCVREKCTIQHAGFLLHQ 221 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + YLK EM +F P+A+ T EIA C F L + P I + + + Sbjct: 222 HAERYLKPMEEMQRLFRQYPDAITRTQEIAEACQFSLDSLKYVYPEEITSDG----RTQM 277 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 EL A G + + + EL + + + YFL V DF+++A+ Sbjct: 278 EELTFLAWQGANEKFNH------AIPEKVEATIKAELAFMEKRNLAAYFLTVHDFVRFAR 331 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 I GRGS A SV Y L IT +DP +F LLF RF++ R PD D+DF +RR+ Sbjct: 332 SQRIL-CQGRGSAANSVVCYCLGITSVDPSKFRLLFARFMSEARDEPPDIDVDFEHERRE 390 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KYG ER A + T L K A+RDV +A+ + V+RL + Sbjct: 391 EVIQYIYQKYGRERAAIVATVTQLHFKGAVRDVAKAMGLSVDMVNRLSASVWRHTEVLDD 450 Query: 489 LQAIAD--DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 Q I D R R ++ G R H G VI LS L P+ Sbjct: 451 QQLIEQGFDPSDRHLRKTLELTC-------QMIGFPRQLGQHTGGFVITQGKLSDLCPVM 503 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 D ++N I+ G +K D L L LT ++K+ D + + L+ +P DD Sbjct: 504 NARMEDRTCIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLVKAHYGLDLTLANVPQDD 563 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 Y +++ T+G+FQ+ES L ++P C D++ V++ RPGPI +V+ Sbjct: 564 PAVYEMISHADTIGVFQIESRAQMSMLPRLKPKCFYDLVIEVAIVRPGPIQGDMVHPYLR 623 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+NG+E + ++ +L T GV ++QEQ M+IA + G++ +EAD LRR+M Sbjct: 624 RRNGEEPVEYPSKELEEILDRTLGVPLFQEQAMEIAIMAGGFTPAEADELRRSMASFKAN 683 Query: 724 EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +++ + G G + + IF+ L F YGF +SHAA++A++ Y ++W+K + Sbjct: 684 GKLHLYEKKLVDGMVARGYEEGFSRRIFKQLQGFEGYGFPESHAASFALLVYVSSWLKCY 743 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837 YP F A + + + DA++ +++ P +N D + + + Sbjct: 744 YPDVFATALLNSLPMGFYQPAQLVIDAQKHGVEVKPVDINLSGWDNLLEEKAGKYWVVRL 803 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 + G+ + ++ + F + + + + LE L A A G Sbjct: 804 GFRQVSGLREEDLQALIAGRSGGYFS-----VNALRDAGVPQAALEKLADADAFRSIGLD 858 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R Q L + + ++ +F + + + + + Sbjct: 859 RRQALWEVSAL-----------GDRPVALFEGQPSESVTETQV-ALPFMTAGEHVVQDYA 906 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 HP+ + L+ + + +E G+ +++A +++ +Q+ T G I + Sbjct: 907 ATSLSLKAHPVSFVREKLKLLRVLSAQEITEAKDGDFVKVAGLILVRQRPGTASG--ICF 964 Query: 1018 VTFSEPAKEYEANFF 1032 +T + + F Sbjct: 965 ITIEDESGTVNLVVF 979 >gi|325956638|ref|YP_004292050.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC] gi|325333203|gb|ADZ07111.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC] Length = 1035 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 326/1024 (31%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%) Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73 LQ SS++LL+ + +++ A+ + D N + + F + A GI+P++G Sbjct: 6 LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65 Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132 Q+ ++ G +++ T GY L+ L S + L + G+ + Sbjct: 66 QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115 Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192 L L + + L+++ + + F + Q+ L KK+ D Y+ + + Sbjct: 116 LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173 Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251 + V L+ +LPLVA +S +L D L A+ + + Sbjct: 174 -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232 Query: 252 HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309 HY+ + +M+ + DL +A+ NT +IA +C+ + P+LP++ + + E Sbjct: 233 HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288 Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369 L A GL+ R Q +Y++RL++EL +I +M F YFLIV D I + + Sbjct: 289 YLHYLAQTGLQARFGQ-----EKIPTEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343 Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 I GPGRGS GS+ +Y+L IT++DPL++ LLFERFLNP R MPD D+D RD Sbjct: 344 VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403 Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489 VI+Y+ KYG + AQI+TFG+L AK ALRDVGR + +V++ + IP Sbjct: 404 VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463 Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549 QA + R A L + LEGL RH S HAAG+VI D ++ + + Sbjct: 464 QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522 Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609 +PVTQ K++E GL+K DFLGL+ LT+L LD + +GVK+D + IP +D +T Sbjct: 523 PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L T IFQ ES G+R+ L + PD ED++A+ +LYRPGP+ NI + RKNG E Sbjct: 583 ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGNE 642 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 + P + +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K Sbjct: 643 PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 +FI+G KNG SK + ++ + +FA+YGFN+SHA AY I++ A++K HYP F Sbjct: 703 SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 A + K +++ A++ NI+++ P +N +++ + +N I L AIKG+ Sbjct: 763 AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820 Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909 A+ I A+ KP+ SL DF R+DSK L +E+L+ AGA D +R +LL + +I Sbjct: 821 AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878 Query: 910 KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969 Q +N ++ L+ + + + E E++VLGF + PL Sbjct: 879 ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928 Query: 970 VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029 + +K + G + ++S ++ +T+ + + F++ + + E Sbjct: 929 AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985 Query: 1030 NFFP 1033 FP Sbjct: 986 IIFP 989 >gi|330399560|ref|YP_004030658.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454] gi|312170297|emb|CBW77336.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 1091 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 280/1050 (26%), Positives = 446/1050 (42%), Gaps = 73/1050 (6%) Query: 1 LTQYLEKS-----PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55 L +EK P + LQ S++S L GA ++ + A A+AITD ++ Sbjct: 44 LANPMEKPANASLPEYAELQCASNFSFLYGASHPEELVARAAQLGYTALAITDECSVAGV 103 Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115 + +A G+ I+G Q + + L +GY L E Sbjct: 104 VRAHLEAKKVGLPLIVGAQFRLAQGQAAPAMA-----------LSALAMNRDGYGNLCEF 152 Query: 116 VSRMYLLDQGKQSVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172 ++ + K + R+ L G L+ E +L Sbjct: 153 ITLGRMRGD-KGTYRLSCDDLAHADAVDRHGC-ALSHCL------VILHPDYPAHEAQLT 204 Query: 173 TFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231 FG R+ V L H + D V ++A H + +VAT DV+ Sbjct: 205 WAAPHFGSRIAVALTLHAQAMDDLHRGVVQRVAARHGVRVVATGAVRMHVRSRKPLQDVV 264 Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291 A+ V + P+ R+ + + LE TV +AR+C+F L Sbjct: 265 TAIRLGQSV-SACGYHLAPNAQQHLRARLRLANVYPRDTLEATVHLARQCTFSLDELRYE 323 Query: 292 LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351 P + LR +A G R G +Q+L+ EL +IA + Sbjct: 324 YPEELVPNG----HSATTYLREQAYLGAHRRFPNG------IPMTVQQQLEHELALIATL 373 Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411 ++ YFL V D + +A+ I GRGS A S Y L IT++DP R +LLFERF++ + Sbjct: 374 RYEPYFLTVYDIVHFARSQGIL-CQGRGSAANSAVCYCLGITEVDPARSNLLFERFVSRE 432 Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471 R PD DIDF RR+EVI+Y+ KYG ER A + + ++ALRD G+AL + Sbjct: 433 RNEPPDIDIDFEHQRREEVIQYLYRKYGRERAALTAAVTTYRPRSALRDAGKALGIDPLI 492 Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531 VDR+ K + + P +++ ++ L G RH S H+ G Sbjct: 493 VDRVAKSHQWFD----TSAQLLKRFEDAGLDTCAPIIEQWATLAATLLGFPRHLSQHSGG 548 Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590 VI LS+LVP+ D V Q++ I+ GL+K D L L L++++++L + Sbjct: 549 FVISRGKLSRLVPIESAAMPDRSVIQWDKNDIDALGLLKIDILALGMLSVIRRALALVAH 608 Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650 QRG +L IP +D TY +++ T+G+FQ+ES L ++P C D++ V++ Sbjct: 609 QRGEPFELHDIPAEDAATYEMISRADTVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIV 668 Query: 651 RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708 RPGP+ +V+ R+ G E + + L T GV I+QEQVMQ+A L +G++ Sbjct: 669 RPGPVQGGMVHPYLRRREGVEPVTYPSEAMRTALARTLGVPIFQEQVMQVAMLAAGFTAG 728 Query: 709 EADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767 EAD LRRAM + +++ ER + G G + A +IF + F +YGF +SHAA Sbjct: 729 EADQLRRAMAAWRSQGGLEQYYERIVHGMVTRGYDRAFAESIFAQIQGFGEYGFPESHAA 788 Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827 ++A++ Y +AW+K H P FL A + + + QDAR+ ++++P V D Sbjct: 789 SFALLVYVSAWLKCHAPAAFLCALLNSQPMGFYTPSQLVQDARRHGVKVLPVDVTISDWD 848 Query: 828 FKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883 + + + L+ I+G+ A I A A +PF + D R +L RR L+ Sbjct: 849 STLQGHSLEAPVRLGLSLIRGLAEDAAARIELARAVRPFADVTDLARRA---QLTRRDLQ 905 Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943 +L A AL +R L + + FA Sbjct: 906 ALASANALASLAGNRRAALWHALAAVPDKDLLRAASDDDVTPAFA--------------- 950 Query: 944 SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 ++ R LG HPL + + L + + G R +V Sbjct: 951 -PLTPGQAIAHDYRALGLTLERHPLALLRAQLLQRRLLPAVVLQRYRDGQLARACGLVTV 1009 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +Q+ T KG + +VT + + +P Sbjct: 1010 RQRPGTAKG--VLFVTLEDESGHTNVIIWP 1037 >gi|326381920|ref|ZP_08203613.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395] gi|326199346|gb|EGD56527.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395] Length = 1096 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 277/1038 (26%), Positives = 466/1038 (44%), Gaps = 73/1038 (7%) Query: 6 EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65 + + L HS+YS L+GA ++++ +A+TD + + + F++ A Sbjct: 67 TSTVPYAELHAHSAYSFLDGASMPEAMVEEAQRLGLRGLALTDHDGFYGVVRFAEAAREF 126 Query: 66 GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125 G+ + G +L ++ + P + +L AEGY+RL +++ ++ Sbjct: 127 GMPTVFGAELSLERDS-----ARAGAVDPPGEHLQVLARRAEGYRRLSRVIADAHMTGGE 181 Query: 126 KQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183 K +R + + E G ++LTG G + RA + A L FG + Sbjct: 182 KGLLRYDAAAITEHAAAGDWLILTGCRKGAVRRALDRGGKRAAGAALGEMIDRFGIGNVA 241 Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVS 241 V L D R + + LA H +P VAT + F + E+ + A+ T + + Sbjct: 242 VELSPGPGSDDDERNAILASLAAQHRVPTVATTGAHFAAPENGRLATAMAAIRARTDITT 301 Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301 +L+N EM+ + EA++N V A C+F L++ AP LP F + Sbjct: 302 IDGWMPGVGGAHLRNGDEMLRLMPAHREAIDNAVAFADECAFSLKLIAPSLPPFDVPDG- 360 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 E LR G G D +++D EL +I + F GYFL+V Sbjct: 361 ---HSESTWLRELTERGAR-----GRYGTREQRPDAYRQIDHELAIIEALTFPGYFLVVH 412 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D + + K+N+I GRGS A S YAL IT++DP+ LLFERFL+P+R PD D+D Sbjct: 413 DIVSFCKENDIL-CQGRGSAANSAVCYALGITNVDPVANHLLFERFLSPERDGPPDIDVD 471 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 DRR+E I++V K+G AQ+ + + ++A+RD RAL Q D K+ + Sbjct: 472 IESDRREEAIQHVYAKHGRSHSAQVANVITYRGRSAVRDTARALGYAPGQQDAWSKIPDS 531 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 P D + E++ ++ L RH H+ G+VI DRP++ Sbjct: 532 AP-------------------------DDVREMAAQISSLPRHLGIHSGGMVICDRPIAD 566 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600 + P + V Q++ GL+KFD LGL L+ L +D + + V VDL+ Sbjct: 567 VCPTEWARMAGRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYMIDLVDEHKGVTVDLAR 626 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658 + + Y +L ++G+FQ+ES L ++P D++ V+L RPGPI ++ Sbjct: 627 LDLTEEAVYDMLCRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSV 686 Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717 Y R+NG E HP ++ L T G+ ++QEQ+MQ+A+ ++G+ +EAD LRRAM Sbjct: 687 HPYIRRRNGLEAPNCDHPSMEDALGRTLGIPLFQEQLMQVARDVAGFGAAEADQLRRAMG 746 Query: 718 GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776 K+ E+M + ++RF G + NGI+ +A I+E +A FA++GF +SH+ ++A + + + Sbjct: 747 SKRSPEKMQRLRQRFYDGMRETNGITGDLADRIYEKMAAFANFGFPESHSQSFASLVFYS 806 Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--R 834 AW K H+P F AA + + + DAR+ +Q+ P VN + + Sbjct: 807 AWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVQVHRPDVNLSLSYAGLENGGLD 866 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L AI+G+ A I+E A PF S+ D RV++ LE++ AGA + Sbjct: 867 VRIGLGAIRGLSDEVATRIVEERSAGGPFVSVADLSRRVEATT---AQLEAIATAGAFES 923 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 G R + N + + + Sbjct: 924 LGRDRR--------AALWEAGAAAGLRNDQLD--------VTSPRGAPTLPGMSEVELTT 967 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 + G +P + +P L MG+ + ++ G+ + + V +Q+ T G Sbjct: 968 VDALSTGVSPRAYPTEYLRPRLDAMGVVPADRLLSVADGSRVLVGGAVTHRQRPATASG- 1026 Query: 1014 RIGWVTFSEPAKEYEANF 1031 + +V + Sbjct: 1027 -VTFVNLEDETGMVNVVC 1043 >gi|16262942|ref|NP_435735.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021] gi|71151852|sp|Q92ZJ6|DNE22_RHIME RecName: Full=Error-prone DNA polymerase 2 gi|14523588|gb|AAK65147.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021] Length = 1087 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 268/1038 (25%), Positives = 454/1038 (43%), Gaps = 70/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L A S + A+ + D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104 Query: 130 RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 I + EGLI +L + + +L ++FGDR YV+L Sbjct: 105 IIHFDDVALY-AEGLIGILVPDLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246 R R D+ + ++ LA H + + TN+ LF + DV+ + T+ Sbjct: 153 RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK EM +F PEAL T+EI RC F L+ P Sbjct: 213 ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGM----T 268 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L++ G+ R +G + + EL +I MK++ YFL V +++ Sbjct: 269 AQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +R Sbjct: 323 ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+++ YGH++ A T +AK A+RDVG+AL +P + L I + Sbjct: 382 REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSW---- 437 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S R D + L ++Q+L G R+ S H G V+ L LVP+ Sbjct: 438 -SETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 +D V +++ IE +K D L L LT + K+ +++ +DL+ IP +D Sbjct: 497 PATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 557 PATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ ++G +NG +K A F L F YGF +SHAA++A+I+Y + ++K + Sbjct: 677 GGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCY 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836 +P F AA + + + +DAR+ +++ P +N D + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895 + ++G+ T A I+ A AD+PF S++D R + L L A A Sbjct: 797 LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLS 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R L ++ ++ + ++ + + + + Sbjct: 854 LERRDALWAIKALRDEPLPLFTAAADR------EARAIAEQEEPEVELRQMTDGQNVVED 907 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HPL + L K I +++ G + A +V+ +Q+ + KG + Sbjct: 908 YSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKG--V 965 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 966 MFITIEDETGIANIVVWP 983 >gi|254282771|ref|ZP_04957739.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] gi|219678974|gb|EED35323.1| DNA polymerase III, alpha subunit subfamily, putative [gamma proteobacterium NOR51-B] Length = 1028 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 272/1035 (26%), Positives = 453/1035 (43%), Gaps = 73/1035 (7%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ L S++S L GA ++++ A A+AITD +L A++ A A GIQ Sbjct: 2 SYAELHCLSNFSFLRGASHPAELVERAAHCGYSALAITDECSLGGAVKAHVAAKACGIQL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G + +++ +V L Y L L+SR K Sbjct: 62 IVGSEFNLN----------------EGIRLVALAPDRAAYAELSGLISRSRRRSA-KGEY 104 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 L + LI+ + + F RL++ + R Sbjct: 105 STSLRDVIFHLKRCLII------------WLPTDDEEQSAYGKQLSSRFSGRLWIGVSRL 152 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G D R Q A LP+VA + HDVL A+ ++T V Q + R+ Sbjct: 153 LGNDEIRRFRARYQFARELALPMVACGDVQMHCAARKPLHDVLTALRYNTSVQQLGQRRL 212 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + RS + P + T+ IA RC F L P + + Sbjct: 213 -VNSQQHLRSLDRLLPLYPPSLTDETLAIAARCHFSLDELRYEYPEEVIPAGE----TAN 267 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 + LR + G R G D R+ EL++I + + YFL V D +++A+ Sbjct: 268 SYLRRQVALGAHARWPDGV------PGDIEDRIHRELDLITELNYEYYFLTVYDIVRFAR 321 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 + +I GRGS A SV Y L IT++ P + SLLFERF++ +R PD D+DF +RR+ Sbjct: 322 ERDIL-CQGRGSAANSVVCYCLAITEVSPEQISLLFERFISRERDEPPDIDVDFEHERRE 380 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KY R A T+ + ++++A+RD+G+AL + VD L K + Sbjct: 381 EVIQYIYQKYSRRRAALAATYITYRSRSAVRDIGKALGLDPIFVDDLAKSLAWWNREREL 440 Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548 A A L + Q++ G RH S H G VI PLS LVP+ Sbjct: 441 SSRFAKH----GITAAGRQAHLFLNLVQEILGFPRHLSQHVGGFVISRGPLSHLVPIENA 496 Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607 V Q++ + IE GL+K D L L L+ ++KSLD+L Q + IP +D Sbjct: 497 AMDSRTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLDWLHQYHPSIRSIQDIPKEDQA 556 Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665 TY +L +LG+FQ+ES L ++P C D++ +++ RPGPI +V+ R+ Sbjct: 557 TYQMLQRGDSLGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 616 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 NG E I I +L+ T GV I+QEQV+++A + +G++ EAD LRRA+ ++ Sbjct: 617 NGLEPISYPSEDIRSVLESTLGVPIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRDSK 676 Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784 +++ G G S A +F+ + F YGF +SH+A++A+++Y +AW++ H+P Sbjct: 677 LLTFEQKLTEGMISRGYSPQFARQLFDQIKGFGGYGFPESHSASFALLAYVSAWLRRHHP 736 Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNR---IYYS 838 F + + + Q AR+ + ++P ++N D + G+ + + Sbjct: 737 AAFYLGLLNSQPMGFYTPSQLIQSARRQGVVVLPIAINHSQWDHQLLPPGNGQAPPLRLG 796 Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898 L +KG+ A I+ + F + D R +L++R +E+L A AL +R Sbjct: 797 LRLVKGLSQAGAERIVAQREQRLFAHVGDLRRRA---RLDKRDMEALANADALQNLSGNR 853 Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958 Q + ++ +Q + + + T+ D I L ++ + Sbjct: 854 HQSQWQIMALEPDSQLLHQTTST---------TETWDDDIHLP---APSTVENVLADYNA 901 Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018 G HPL + +P + E + +R+A +V +Q+ T G + ++ Sbjct: 902 TGLTLRSHPLALLRPQSPFDRCRRQSELASLGNHRFVRIAGIVTCRQRPGTASG--VIFL 959 Query: 1019 TFSEPAKEYEANFFP 1033 T + + +P Sbjct: 960 TLEDETGNHNVVVWP 974 >gi|256962530|ref|ZP_05566701.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704] gi|307272063|ref|ZP_07553328.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855] gi|256953026|gb|EEU69658.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704] gi|306511283|gb|EFM80288.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855] Length = 1109 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 SF L +SYSLL + + + + + A +AITD N L A+EF + AGIQP Sbjct: 2 SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEVCQEAGIQP 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG +L+ + ++L +GYQ+L++L S + Sbjct: 62 IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108 Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186 L E + L +T + G + + FF Q A F L+V Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160 Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246 ++ R + +LP VA L+ E+ A VL ++ + ++ + Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 + R ++ L A V+ + + +V P+ + + + Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + LR + L R+ + Y++RL+ EL +I M F YFLIV D + + Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 N I G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D +R Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EV+ YV KYGH +AQI TFG++ AK LRDV R + S+ +R +PN Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 + + R +E P+ L + + +LEGL RH STHAAG+VI D L LVP+ Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605 +++ +TQF M +EK GL+K DFLGL+ L+++ +L + + + L+ IP DD Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665 T L T G+FQ ES+G+R L + P IEDI A+ +LYRPGP+ NI V+ RK Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629 Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725 G E+I P + P+L+ T G+I+YQEQ+MQ+A ++G+SL +AD+LRRA+ KK K+ + Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689 Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785 D+++ F++GA + G + A +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749 Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844 F A + N KIK++ +AR+ I+ PS+N F + +I + +++KG Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809 Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903 + ++I+ E + P+ + ++F R+D K L +E L+ GA D +R QL Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869 Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963 L++ + + ++ K E+ + R E E++ LG Y Sbjct: 870 GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918 Query: 964 SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022 SGHP + +K L K + +L V + + +T+KG ++ +V + Sbjct: 919 SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974 Query: 1023 PAKEYEANFFP 1033 FP Sbjct: 975 TTGSISLTLFP 985 >gi|172061785|ref|YP_001809437.1| error-prone DNA polymerase [Burkholderia ambifaria MC40-6] gi|171994302|gb|ACB65221.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6] Length = 1071 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 273/1055 (25%), Positives = 445/1055 (42%), Gaps = 76/1055 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA ++++ A IAITD +L A A A G+ Sbjct: 9 PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G ++ + G P P +VLL EGY L EL+S + K + Sbjct: 69 LIVGSFFEVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 123 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L E L + + + + V + ++ F+ FG R + L Sbjct: 124 YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGARARLGL 181 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q R D + ++ + +VA + DV+ A+ V Sbjct: 182 VQLQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPV----- 236 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302 + Y + + + A + E IL L + D Sbjct: 237 ---SECGYALAPNAEQHLRARGRIAKLFSPEELDETCAILDACDFKLDSLQYEYPDEIVP 293 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L + AG R QG + +++ +EL++IAR+ + +FL V D Sbjct: 294 KGLTPTRHLEQETFAGAAARYPQG------IPEKVERQIRYELDLIARLSYEPFFLTVYD 347 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ +R PD D+DF Sbjct: 348 IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 406 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+++ +KYGH+R A + + + LR+ G+AL + VDR+ K Sbjct: 407 EHQRREEVIQHIYDKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWF 466 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 LQ A A P + E++ +L RH S H+ G VI L++L Sbjct: 467 DGSRDLLQQFAST----GLDPAMPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 522 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596 VP+ V Q++ +E GL+K D L L L+ L ++ D + G Sbjct: 523 VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPF 582 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ RPGPI Sbjct: 583 TLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQ 642 Query: 657 NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 V+ K + ++ + +L+ T GV I+QEQVMQIA + +G++ E Sbjct: 643 GGAVHPYLKRRRIMAGEEEGEVTYPSEALKEVLERTLGVPIFQEQVMQIAIVAAGFTPGE 702 Query: 710 ADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD LRRAM K ++K + I G + ++ A IFE + F +YGF +SHAA+ Sbjct: 703 ADELRRAMAAWKRKGNLEKYHGKIIDGMLERNYTREFAEQIFEQIKGFGEYGFPESHAAS 762 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 +A ++Y ++W+K H P FLAA + + + QDA++ +Q++P V + Sbjct: 763 FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEA 822 Query: 829 KV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 + G + L+ ++G+G AR I A A PFD+++ R +L Sbjct: 823 SLAALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRA---QLE 879 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RR LE+L A AL R L + ++ A D+ Sbjct: 880 RRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEP 924 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + + + G + HP+ + +P LR + E G R Sbjct: 925 EKPALGAPSEADDILADYDTTGLTLNRHPVALVRPALRAQRLSSAAELRDRSDGRLARAC 984 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V ++Q T KG + ++T + P Sbjct: 985 GIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017 >gi|17549021|ref|NP_522361.1| error-prone DNA polymerase [Ralstonia solanacearum GMI1000] gi|71151835|sp|Q8XRN1|DNAE2_RALSO RecName: Full=Error-prone DNA polymerase gi|17431271|emb|CAD17951.1| probable dna polymerase III (alpha chain) protein [Ralstonia solanacearum GMI1000] Length = 1075 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 259/1072 (24%), Positives = 430/1072 (40%), Gaps = 109/1072 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA + ++ + A A+A+TD ++ + A AG++ Sbjct: 12 PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG + + +VLL +GY L E +++ L K Sbjct: 72 LIIGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 119 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--YV 184 R+ L E L + + + + + +++FGDRL + Sbjct: 120 YRLLADDLAAPAGELAHLRGMPHCLAILLPDY--DPDPRHLLAQAQWCRQVFGDRLSMAL 177 Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244 L DR+R V ++ ++P+VAT + S + HDVL A+ S +++ Sbjct: 178 ELPLRHADDRHR-GTVAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECG 236 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKECD 301 ++ F + L +VE+A C F L A P + E Sbjct: 237 LALAPSAEQAMRTRMQLAFFYQGERGAQVLRRSVELASLCDFSLDEIAYEYPHEVVPEG- 295 Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361 + L + +AG R + R +LD EL +IA +++ +FL V Sbjct: 296 ---QTPAGYLLAEVMAGAARRYGKD------IPSKVRAQLDEELALIAELRYEPFFLTVY 346 Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421 D +++A+ +I GRGS A S Y L IT+++P + LF RFL+ R PD D+D Sbjct: 347 DVVRFARSQSIL-CQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVD 405 Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481 F RR+EVI+Y+ KYG R A + + ++ALRDVGRAL + ++++ K Sbjct: 406 FEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAW 465 Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541 A + + P V R + ++L G RH S H G VI LS+ Sbjct: 466 WDGR----HEFAQRAGQQGLDPESPLVQRWAGLIEQLRGFPRHLSQHVGGFVIAQGKLSR 521 Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRGV 594 LVP+ + V Q++ +E L+K D L L LT ++++LD A G Sbjct: 522 LVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYGA 581 Query: 595 KVDLSLIPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 L++ D + TY ++ T+G+FQ+ES + L ++P D++ V++ RP Sbjct: 582 PDKLAMQHLPDEDTATYEMICRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRP 641 Query: 653 GPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705 GPI +V+ + + + P + +L+ T GV I+QEQVM+IA G+ Sbjct: 642 GPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGF 701 Query: 706 SLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763 + EAD LRR M K+ Q + + FA+YGF + Sbjct: 702 TADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPE 761 Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823 SHAA +A ++Y ++++K H P F AA + + + Q+AR+ ++++P V Sbjct: 762 SHAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTA 821 Query: 824 PCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875 D + G I L I+G+ I+ A A PF S+ED R Sbjct: 822 SAWDSTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVEDLAHRA--- 878 Query: 876 KLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRTN 921 ALD R Q L +Q+ Q Sbjct: 879 --------------ALDRHDLSVLAAANALLSLAGHRRQALWQTLALQEPGQDHA----- 919 Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981 + + + + + + LG HPL + +P L +M Sbjct: 920 ----LLRQARPVEAPLV----LPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRFV 971 Query: 982 GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G R +V +Q+ T KG+ +V+ + +P Sbjct: 972 TAAALAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGAVNVVLWP 1021 >gi|307311805|ref|ZP_07591444.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|306899546|gb|EFN30176.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1087 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 269/1038 (25%), Positives = 454/1038 (43%), Gaps = 70/1038 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 + LQV + +S L A S + A+ + D N+L + + + A G++ Sbjct: 2 RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 ++GC+LD+ SI++ + Y RL L++ K + Sbjct: 62 VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104 Query: 130 RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187 I + EGLI +L + + +L ++FGDR YV+L Sbjct: 105 IIHFDDVALY-AEGLIGILVPDLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152 Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246 R R D+ + ++ LA H + + TN+ LF + DV+ + T+ Sbjct: 153 RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212 Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306 D YLK EM +F PEAL T+EI RC F L+ P Sbjct: 213 ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGM----T 268 Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366 + L++ G+ R +G + + EL +I MK++ YFL V +++ Sbjct: 269 AQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322 Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426 A+ I GRGS A S Y L IT IDP LLFERF++ +R PD D+DF +R Sbjct: 323 ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381 Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486 R+EVI+++ YGH++ A T +AK A+RDVG+AL +P + L I + Sbjct: 382 REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSW---- 437 Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546 S R D + L ++Q+L G RH S H G V+ L LVP+ Sbjct: 438 -SETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRHLSQHPGGFVLTHDRLDDLVPIE 496 Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605 +D V +++ IE +K D L L LT + K+ +++ +DL+ IP +D Sbjct: 497 PATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556 Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663 TY ++ TLG FQ+ES L M+P D++ V++ RPGPI +V+ Sbjct: 557 RATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616 Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723 R+ GKEK+ P ++ +L +T GV ++QE M++A + +G++ EAD LR++M Sbjct: 617 RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676 Query: 724 -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 + + K++ ++G +NG +K A F L F YGF +SHAA++A+I+Y + ++K + Sbjct: 677 GGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCY 736 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836 +P F AA + + + +DAR+ +++ P +N D + + + Sbjct: 737 FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796 Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895 + ++G+ T A I+ A AD+PF S++D R + L L A A Sbjct: 797 LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLS 853 Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955 R L ++ ++ + ++ + + + + Sbjct: 854 LERRDALWAIKALRDEPLPLFTAAADR------EARAIAEQEEPEVELRQMTDGQNVVED 907 Query: 956 QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015 G HPL + L K I +++ G + A +V+ +Q+ + KG + Sbjct: 908 YSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKG--V 965 Query: 1016 GWVTFSEPAKEYEANFFP 1033 ++T + +P Sbjct: 966 MFITIEDETGIANIVVWP 983 >gi|206559167|ref|YP_002229927.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315] gi|198035204|emb|CAR51078.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315] Length = 1070 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 267/1055 (25%), Positives = 444/1055 (42%), Gaps = 76/1055 (7%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S L GA + ++++ IAITD +L A A A G+ Sbjct: 8 PDYAELFCRSNFSFLHGASHADELVERAVKLGYRGIAITDECSLAGAPRMHVAAKANGLP 67 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 +IG D+ D G P P +VLL EGY L EL+S + K + Sbjct: 68 LVIGSYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 122 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 ++ L E L + + + + V + ++ F+ FG+R + L Sbjct: 123 YQLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGERARLGL 180 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 Q R D + ++ + + LVA + DV+ A+ V Sbjct: 181 VQLQRALDGAQRDEIREAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVGMPV----- 235 Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302 + Y + + S A + + L + D Sbjct: 236 ---SECGYALAPNAEQHLRSRGRIAKLFSSAEIAETCAMFDACDFELDSLRYEYPDEIVP 292 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 L + AG VR QG + +++ EL++IAR+ + +FL V D Sbjct: 293 AGLTPTRYLEQETFAGAAVRYPQG------IPEKVDKQIRHELDLIARLSYEPFFLTVYD 346 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ NI GRGS A SV Y L IT+++P + ++LFERF++ +R PD D+DF Sbjct: 347 IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 405 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+++ KYG +R A + + + LR+ G+AL + VDR+ K Sbjct: 406 EHQRREEVIQHIYAKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWF 465 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 L+ A P + E++ +L RH S H+ G I L++L Sbjct: 466 DGSRDLLRQFAST----GLDPETPLIRTWAELAGRLLNFPRHLSQHSGGFAISRGKLTRL 521 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596 VP+ V Q++ +E GL+K D L L L+ L ++ D A+ G Sbjct: 522 VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPF 581 Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656 L IP DD TY ++ T+G+FQ+ES L ++P D++ VS+ RPGPI Sbjct: 582 TLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVQVSIVRPGPIQ 641 Query: 657 NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709 V+ + + ++ + +L T GV I+QEQVMQIA + +G++ E Sbjct: 642 GGAVHPYLQRRRIVAGEEEGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGE 701 Query: 710 ADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768 AD LRRAM K ++K +++ ISG + ++ A IFE + F +YGF +SHAA+ Sbjct: 702 ADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAAS 761 Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828 +A ++Y ++W+K H P FLAA + + + QDA++ ++++P V + Sbjct: 762 FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSTWEA 821 Query: 829 KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878 + + L+ ++G+ AR I A A PFD+++ R +L Sbjct: 822 ALEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARAAGPFDNVDTLARRA---QLE 878 Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938 RR LE+L A AL R L + ++ A D++ Sbjct: 879 RRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEV 923 Query: 939 TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998 + + + G + HP+ + +P LR + E G R Sbjct: 924 EQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARAC 983 Query: 999 AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 +V+++Q T KG + ++T + P Sbjct: 984 GLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1016 >gi|190574832|ref|YP_001972677.1| error-prone DNA polymerase [Stenotrophomonas maltophilia K279a] gi|190012754|emb|CAQ46383.1| putative DNA polymerase III alpha subunit [Stenotrophomonas maltophilia K279a] Length = 1036 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 283/1043 (27%), Positives = 452/1043 (43%), Gaps = 86/1043 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S GA + + A A+AITD +L + Q A A G+ Sbjct: 6 PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKAHGVA 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + ++ P + LL + Y L +L++ K Sbjct: 66 LIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRRAA-KGE 108 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R L + + + A L + F DRL++ ++ Sbjct: 109 YRCLREDLLGLPD------------GLLCLWLDRQP--AATDLELLRAGFNDRLWLAVEL 154 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +D R Q+ H L LVA+ + D L A+ H V++ R Sbjct: 155 HHEHDDARRLQQLQAFGERHRLTLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + P+ R E L T+ IA RC F L+ PR + E D Sbjct: 214 LFPNGERHLRPRTALAQLYPAELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR + R +G R++++ EL +I ++ YFL V D +++A Sbjct: 270 DSWLRELVEEKIPWRWPEGIKDAQ------RKQIEHELALIREKNYASYFLTVHDIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S + L +T+IDP R +LLFERF++ +R PD DIDF +RR Sbjct: 324 RSQDIL-CQGRGSAANSTVCFVLGVTEIDPARSNLLFERFISAERNEPPDIDIDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +YG ER A S + ++A+RDV RAL +P QV+ L + + + Sbjct: 383 EEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGN-- 440 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + R R P + RLL ++ +L RH S H G VI + PLS LVP+ Sbjct: 441 --IPLPETLRERGFDPDTPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 +D V Q++ ++ GL+K D L L LT ++K L L Q G + + IP +D Sbjct: 499 AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLKQHGLHEGRMDAIPDEDG 558 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY ++ T+G+FQ+ES L MQP D++ V++ RPGPI +V+ + Sbjct: 559 PTYDMICAADTIGVFQIESRAQMAMLPRMQPREFYDLVIEVAIVRPGPIQGDMVHPYLER 618 Query: 667 GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + P ++ + T GV ++QEQVMQ+A +GY EAD LR Sbjct: 619 RRILREQGPDALNDPDNPLYPPQLERVFARTLGVPLFQEQVMQLAVEAAGYEPGEADALR 678 Query: 715 RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+M + + +E+ ++G KNG S ++FE + F DYGF +SHAA++A+++ Sbjct: 679 RSMAAWKRRGGLEPHREKLLTGMLKNGFSLEYGEHLFEQIKGFGDYGFPESHAASFALLT 738 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV----DFK 829 Y + W+K H+P F A+ + + + QDAR+ I+++P V DF Sbjct: 739 YASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLDFS 798 Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 G I L + G + IM A +PFD + D C R L+RR L AG Sbjct: 799 RGAAAIRLGLRLVDGCNEPDVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + T ++ L S Sbjct: 856 ALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPSAW--- 900 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + + R G HP+ + LR G + V G +R+A +V +Q+ +T Sbjct: 901 EDMQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLVDHGHGRRVRIAGLVRMRQRPQT 960 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + ++T + A + Sbjct: 961 ASG--VTFLTLEDETGMVNAVVW 981 >gi|296129882|ref|YP_003637132.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296021697|gb|ADG74933.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109] Length = 1173 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 292/1120 (26%), Positives = 479/1120 (42%), Gaps = 124/1120 (11%) Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67 P + L HS++S L+GA + + A Q A+A+TD + L+ + F+Q A A G+ Sbjct: 29 PPRYAELHAHSAFSFLDGASQPEELAAEAARLGQSALALTDHDGLYGVVRFAQAARAVGL 88 Query: 68 QPIIGCQLDIDMQDNLKMTNQGKT-------------PFPTVPSIVLLVSTAEGYQRLIE 114 + G +L + D + + + P P +++L A+GY+ L Sbjct: 89 PTVFGAELHLPAPDPRRHPREKRPTPGPPVLDAPTGVPDPRASHLLVLARGADGYRALSR 148 Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------- 164 ++ +L K + L L E ++LTG G + RA Sbjct: 149 AIAEGHLRTGRKGAAEYHLEELAEAAAGQWLVLTGCRKGAVRRALAGGDPSGVLGVAPGG 208 Query: 165 -QVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221 + A L LFG D + V H YD R + LA LPLVAT N + + Sbjct: 209 IEAARTELDRLVALFGRDNVAVETTMHGDAYDTDRADALATLAADARLPLVATGNVHYAT 268 Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARR 280 E D + L AV + + D +L++ +EM+ + P A+ ++A Sbjct: 269 ERDADLALALAAVRARSSLDDLDGWLPGAPVAHLRSAAEMLHLHRRHPSAVTTAADLAAE 328 Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340 C+F L + AP LP + + E LR G G Y + Sbjct: 329 CAFDLSLVAPSLPPYPVPDG----HTEATWLRELVRRGAAELY--GPPDAERVPGAY-AQ 381 Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400 L+ EL VI + F GYFL+V D + + ++ I GRGS A S Y L +T +DP++ Sbjct: 382 LEHELRVIEDLGFPGYFLVVYDLVDFCRRQGIM-AQGRGSAANSAVCYVLRVTAVDPVKH 440 Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460 LLFERFL P+R PD D+D RR+EVI++V +G AQ+ S + ++A+RD Sbjct: 441 GLLFERFLAPERDGPPDIDVDIESARREEVIQHVYATHGRSHAAQVANVISYRPRSAVRD 500 Query: 461 VGRALQMPYSQVDRLCKLIPND-----PAHPVSLQAIADDSRF----------------- 498 RAL Q D I P P + + Sbjct: 501 AARALGYDAGQQDAWSTSIERWGSLRGPEKPSAWWHLTRSGPVGPGSEVAGMPTADNHDV 560 Query: 499 ------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552 A A+ + +++++++ L RH H+ G+V+ DRP+ ++ P+ Sbjct: 561 VPTRLPPSAAEAEEIPEHVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMEG 620 Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611 V Q++ + AGL+KFD LGL LT L+ + + + DL +P +D Y L Sbjct: 621 RTVLQWDKEDCADAGLVKFDLLGLGMLTALRLAFTEVEKHEGVTLDLHGLPHEDPAVYEL 680 Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKE 669 L+ T+G+FQ+ES L ++P DI+ V+L RPGPI ++ + NR G+E Sbjct: 681 LSAADTVGVFQVESRAQMGTLPRLRPSTFYDIVVEVALIRPGPIQGGSVHPFINRAKGRE 740 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQ 728 + +HPL++ L +T GV ++QEQ+MQ+A ++ ++ +EAD LRRAM K+ E M+ Sbjct: 741 PVTYLHPLLEKSLGKTLGVPLFQEQLMQMAIDVADFTPAEADQLRRAMGSKRSMERMEAI 800 Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788 + R + G + NGI + IF+ L FAD+GF +SHA ++A + Y ++W+K H+P F Sbjct: 801 RSRLMEGMAANGIGSQVREQIFDKLKAFADFGFPESHAYSFAFLVYASSWLKVHHPAAFY 860 Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--------------------------- 821 A + + + DAR+ I+++ P V Sbjct: 861 AGLLAAQPMGFYSPQSLAADARRHGIEVLRPDVLASEVLAVVERLGPPPHGGEPRLVPQP 920 Query: 822 ----NTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871 T V + G+ + L ++ +G AR +++A AD PF L+D R Sbjct: 921 SGTGPTRPVGVRTGEGSVRTLAVRQGLTQVRTIGEDVARALVDARTADGPFTDLQDLVRR 980 Query: 872 VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931 V L +E+L AGALD G R L + + + + Sbjct: 981 VH---LTTAQIEALATAGALDSLGVDRRSGLWAAGAL----------AQEGPDTLPGVAV 1027 Query: 932 GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991 G + + + G +P + L G+ E++ T Sbjct: 1028 G-----VKAPALPGLSGVEVATADVWATGVSVDSYPTQFVRDGLDAAGVLTVEQAFRTEE 1082 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 G + +A +V +Q+ T +G + +++ + Sbjct: 1083 GRRVAVAGVVTHRQRPGTAQG--VTFLSLEDETGLLNIVC 1120 >gi|160915308|ref|ZP_02077521.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991] gi|158433107|gb|EDP11396.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991] Length = 1027 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 333/1025 (32%), Positives = 559/1025 (54%), Gaps = 44/1025 (4%) Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71 VHL V S+Y+LL+ L++ I+ ++A+TD N + A+ F I+PI Sbjct: 3 VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62 Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131 G +++ ++ +LL +GY L++L + + + K ++ Sbjct: 63 GMEVEAAYDNDSLG-------------FILLAKNDQGYVDLMKLSTLLNTGEHAK---QV 106 Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190 L T+ ++LT G ++ + K L + F D YV++ R+ Sbjct: 107 SFEELCLY-TKDCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDS 164 Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250 G + + ++ L ++ VA + F E + E++ L A+ V + Sbjct: 165 GLLKSKNPRLKSLCKEMKIRTVALSRIYFQDEAEEESYKTLCAIHQQVSVDDRMLNFSPK 224 Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310 +Y + A + EIA +C+ +Q ILP+F K E Sbjct: 225 RYYRSQAEMAQLYDEEDLLA---SEEIAAKCNVKMQFPQAILPKFKNKYGV----SSEEF 277 Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370 LRN GL R+ + Y+QRL++EL+VI M ++ YFLIV DFI++AK Sbjct: 278 LRNLCHKGLAKRMH-----FQAIPKVYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQ 332 Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430 NI +GPGRGS AGS+ +Y L IT +DPL+++LLFERFLNP+R+SMPD D DF +RRDEV Sbjct: 333 NIYIGPGRGSAAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEV 392 Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490 I YV+ YG R + IITF +L AK LRDVGRA+ + ++D LCK++P+ P + Sbjct: 393 IEYVKGLYGSHRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDYT 452 Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550 + +RF++ + +L IS++LEGL RHAS HAAGIV+ + +S + P+ DV Sbjct: 453 -YENSARFKQKINSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DVD 510 Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609 + + TQF M ++E+ GLIK DFLGL+ LT++ + ++ + + K+D+ IP +D +T+ Sbjct: 511 AGISATQFTMDYMEELGLIKMDFLGLRNLTIIDEVVNLINRDHENKLDIMHIPLNDKKTF 570 Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669 L+ T+G+FQLES GM+ L M+P C EDI+A V+L+RPGP++NI Y R+ + Sbjct: 571 ALIQAVDTVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMENIPEYLERRANPQ 630 Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729 K+ IHPL+ P+L+ T G++IYQEQ+MQ+AQ+++G+SL +AD LR+A+ KK EE+ + K Sbjct: 631 KVDYIHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLK 690 Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789 FI GA + G + +A++++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F Sbjct: 691 NDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFV 750 Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849 + + + + K ++ +A++ I I+ PSVN +++ + + L IKG+G Sbjct: 751 SLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKRSLRFPLNGIKGIGNAV 810 Query: 850 ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908 I++ F DF +R+ + + ++ +E L++AGALD F +R ++ +L++ Sbjct: 811 CSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLEDA 870 Query: 909 QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968 +Y + V+ ++ +FA E + I++++ E E+ LGFY S HP+ Sbjct: 871 LRYGELVKIEDADQI--LFAFELVSKPAIISVKEHRSM----LVEKEKECLGFYLSSHPI 924 Query: 969 DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028 ++ + + + A +R M+ +Q +T+ G+ + + ++ + + Sbjct: 925 ELLRKRMNAQ-LAPLIALKAQR--GYVRFLCMIERVKQHRTKNGALMAFAVSADETSKID 981 Query: 1029 ANFFP 1033 P Sbjct: 982 LVCMP 986 >gi|194366156|ref|YP_002028766.1| error-prone DNA polymerase [Stenotrophomonas maltophilia R551-3] gi|194348960|gb|ACF52083.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 1036 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 282/1043 (27%), Positives = 449/1043 (43%), Gaps = 86/1043 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S GA + + A A+AITD +L + Q A G+ Sbjct: 6 PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + ++ P + LL + Y L +L++ K Sbjct: 66 LIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRRAA-KGE 108 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R L + + + + L + F DRL++ ++ Sbjct: 109 YRCLREDLLGLPD------------GLLCLWLDRQPAAID--LELLRAGFDDRLWLAVEL 154 Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +D R Q+ H LPLVA+ + D L A+ H V++ R Sbjct: 155 HHEHDDARRLQQLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + P+ R E L T+ IA RC F L+ PR + E D Sbjct: 214 LFPNGERHLRPRTALAQLYPSELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR G+ R G R++++ EL +I ++ YFL V D +++A Sbjct: 270 DSWLRVLVERGIPWRWKGGIEPAQ------RKQIEHELALIREKNYASYFLTVQDIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S + L +T+IDP R +LLFERF++ +R PD DIDF +RR Sbjct: 324 RSQDIL-CQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV +YG ER A S + ++A+RDV RAL +P QV+ L + + H Sbjct: 383 EEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH-- 440 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + R R P + RLL ++ +L RH S H G VI + PLS LVP+ Sbjct: 441 --VPLPETLRERGFDPETPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 +D V Q++ ++ GL+K D L L LT ++K L L Q G + I DD Sbjct: 499 AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIEDDDK 558 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY ++ T+G+FQ+ES L +QP D++ V++ RPGPI +V+ + Sbjct: 559 PTYDMICAADTIGVFQIESRAQMAMLPRLQPREFYDLVIEVAIVRPGPIQGDMVHPYLER 618 Query: 667 GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + P + + T GV ++QEQVMQ+A +GY+ EAD LR Sbjct: 619 RRLLREQGPDALNDPDNPLYPPQLKRVFARTLGVPLFQEQVMQLAVDAAGYTPGEADALR 678 Query: 715 RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+M + + +E+ ++G KN S+ ++FE + F DYGF +SHAA++A+++ Sbjct: 679 RSMAAWKRRGGLEPHREKLLAGMLKNNFSREYGEHLFEQIKGFGDYGFPESHAASFALLT 738 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830 Y + W+K HYP F A+ + + + QDAR+ I+++P V D + Sbjct: 739 YASCWLKCHYPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLDFS 798 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 G I L + G R IM A +PFD + D C R L+RR L AG Sbjct: 799 KGPAAIRLGLRLVDGCNEPAVRAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F + T ++ L S Sbjct: 856 ALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPSAW--- 900 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + + R G HP+ + LR G + G +R+A +V +Q+ +T Sbjct: 901 EDMQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLAGHGHGRRVRIAGLVRMRQRPQT 960 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + ++T + A + Sbjct: 961 ASG--VTFLTLEDETGMVNAVVW 981 >gi|90417277|ref|ZP_01225203.1| DNA polymerase III, alpha subunit, putative [marine gamma proteobacterium HTCC2207] gi|90330862|gb|EAS46125.1| DNA polymerase III, alpha subunit, putative [marine gamma proteobacterium HTCC2207] Length = 1048 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 261/1061 (24%), Positives = 446/1061 (42%), Gaps = 99/1061 (9%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 S+ L S+++ L GA + ++ + + AIAITD +L ++ A + Sbjct: 2 SYAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDHDFKL 61 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 IIG + +D ++ L + Y L L++ K S Sbjct: 62 IIGSEFRLD-----------------GHKLIALAPNRQAYSELSALITLARRRGD-KGSY 103 Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189 ++ + L+ L++ V +R F DRL+V + Sbjct: 104 QLDWNDLEGNLRNALLI-----------WLPSQQLDVDHQRGEQLSNWFKDRLWVGITHL 152 Query: 190 R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248 G+D LA +LP+VA + S + D L A+ H+ V Q + R Sbjct: 153 LSGHDANDYYYYRNLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQRRF 212 Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308 + R L T+ IA+RC F L+ P + E Sbjct: 213 -ANSERHLRGLNQLQKLYPGALLRETLNIAKRCHFSLEELRYEYPSEVVPEH----LTAT 267 Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368 +LR G+ R G +Q R+++++EL VIA + + YFL V D + +A+ Sbjct: 268 EQLRFLVEQGVAKRWPNG------ISQSIRKQIEYELQVIAELNYESYFLTVEDIVAFAR 321 Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428 NI GRGS A SV Y L IT++ P + SLLFERF++ +R PD D+DF RR+ Sbjct: 322 SRNIL-CQGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEHQRRE 380 Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488 EVI+Y+ KYG +R A T S + ++A+RDVG+AL + +++L + + Sbjct: 381 EVIQYIYQKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSMSWWDRQADL 440 Query: 489 LQAIAD--------DSRFREARLADPSVDRLLEISQKLEG-------LYRHASTHAAGIV 533 + + + + +I+ RH S H G + Sbjct: 441 QALFQQQGGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQHVGGFI 500 Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593 I P+S LVP+ ++ V Q++ IE GL+K D L L L+ + + D ++Q Sbjct: 501 ITKSPISTLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDLISQHQ 560 Query: 594 VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652 + IP DD TY +L T ++G+FQ+ES L ++P C D++ +++ RP Sbjct: 561 QINLTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEIAIVRP 620 Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710 GPI +V+ R+ G E + I +L+ T G+ ++QEQV+++A + +G+S +A Sbjct: 621 GPIQGGMVHPYLRRRQGLETVDYPSQEIKSVLERTLGIPVFQEQVIRLAMVAAGFSGGQA 680 Query: 711 DVLRRAMGKKIKEEM------DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764 D LRRAM K + +++ G G S A +F+ + F YGF +S Sbjct: 681 DQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVYGFPES 740 Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824 H+A++A+++Y +AW+K H+P F A + + + QDA++ I+I P V Sbjct: 741 HSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPIDVCHS 800 Query: 825 CVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRV 872 + + + I L IKG A I+ A ++ + F+SL Sbjct: 801 DWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQLSR-- 858 Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932 + L++ L L AGAL +R Q I+ Y +E + + E++ A Sbjct: 859 -AAGLSQADLALLSSAGALRSLTSNRRQAHWDALAIEDYRPLLEPAQNS--ESLPAI--- 912 Query: 933 TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIR 991 S + + G HP+++ + + + K + Sbjct: 913 ----------LSTPSEIEELNADYSSTGVSLGRHPMEILREQSKTLQRCKRTIDLPTLGN 962 Query: 992 GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +R+A +V +Q+ T G + ++T + + Sbjct: 963 RRFVRIAGLVTGRQRPGTASG--VIFLTLEDETGNSNIVVW 1001 >gi|91788255|ref|YP_549207.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666] gi|91697480|gb|ABE44309.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666] Length = 1068 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 261/1058 (24%), Positives = 432/1058 (40%), Gaps = 94/1058 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S GA + ++ A+AITD ++ + + G+Q Sbjct: 7 PDYAELHALSNFSFQRGASHAQELAERAFKLGYKALAITDECSVAGVVRAHEVTRELGLQ 66 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126 + G + + +V+L A G+ L E ++ K Sbjct: 67 LLPGAEFLV--------------QAANAFRLVVLPHNAAGWGNLCEFITEARRAGDEVDK 112 Query: 127 QSVRI-----CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181 S R+ S L + I+L+ +A LFG Sbjct: 113 GSYRVVLGETDFSRLADCE----ILLSPLPDAIHTQALC--------AHAEWATGLFGPN 160 Query: 182 LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240 ++ ++ +G D R Q+ ++A + LVA N L HDV+ A+ V Sbjct: 161 AWLAVELLQGLDDALRLQQLQEVAGHTGIRLVAAGNVLMHKRSRKPLHDVMTAIRLGRPV 220 Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + + + R M L T+E+A RCSF L + E Sbjct: 221 -HECGFALQANAEAHLRPRMRLADIYPAGLLRATLEVAARCSFNLDEIRNLYRYPREDMV 279 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + LR G R +G + R++L FEL +I +++ +F+ V Sbjct: 280 PPA-ETPARWLRRLTWQGAHTRYPRG------IPRKVRKQLGFELALIEELEYEMFFITV 332 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +++A + I GRGS A S Y L +T ++P LLFERF++ +R PD D+ Sbjct: 333 HDIVRFANEQKIL-CQGRGSAANSAVCYCLGVTAVNPAESKLLFERFISRERREPPDIDV 391 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR+EVI+Y+ KYGH+R A T + ++A+RDVG+AL M +++ K Sbjct: 392 DFEHERREEVIQYIYGKYGHDRAAIAATVIRYRPRSAIRDVGKALAMAPGLIEQFAKEHF 451 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 V + + R V + L++S +L G RH S H G V+ L+ Sbjct: 452 WFDGSEV----LEEKIRQAGLAGRVGPVLQWLDLSAQLIGFPRHLSQHVGGFVLTQGKLT 507 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600 +LVP+ D + Q++ +E GL+K D L L L+ +++ L + Q Sbjct: 508 RLVPVQPASMEDRRIIQWDKDDLEAMGLLKVDVLALGMLSAIRRCLAMVNQTRGSQLQMH 567 Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660 D TY ++ T+G+FQ+ES L +QP D++ V++ RPGPI +V Sbjct: 568 QIAPDEVTYDMICEADTVGVFQIESRAQMSMLPRLQPRSYYDLVVEVAIVRPGPIQGGMV 627 Query: 661 YNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715 + KN + +I +P ++P L+ T G+ I+QEQVMQIA + + ++ EAD LRR Sbjct: 628 HPYLKNREILRNGGEIKPEYPALNPALERTLGIPIFQEQVMQIAMIAADFTPGEADDLRR 687 Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774 +M K +D+ R ++ NG S + IF + F DYGF +SHAA++A + Y Sbjct: 688 SMAAWKRKGGVDRFHGRLVNAMVNNGYSAEFSERIFSQILGFGDYGFPESHAASFAKLVY 747 Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831 + W+K H P FLAA + + + QDA + +++ V D + Sbjct: 748 VSCWLKCHEPACFLAAMVNSQPMGFYSPSQLVQDAVRHGVEVRAVDVMHSDWDCTLEPAE 807 Query: 832 -----------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 + L + G+ A ++EA A F S ED SR Sbjct: 808 NKALPQHPGIYPGIKENQPAVRLGLRLVSGLREDAAIRLVEARAQAAFSSTEDLVSRA-- 865 Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934 +LN + +L A AL R Q + + K A + K+ + Sbjct: 866 -RLNTLEINALAAADALLPLSGHRRQQVWDA-SAIKPAPGLLKSVPTHETPL-------- 915 Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994 + + + G HP+ + + L + G+ E A G Sbjct: 916 -------ELPDTPEGENILFDYQATGLTLRRHPVALLRERLARKGLLSASELNALPDGEE 968 Query: 995 IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 + +V +QQ +T G+ +VT + + Sbjct: 969 VAGCGIVTVRQQPQTANGT--IFVTLEDETGPVNVIVW 1004 >gi|327539745|gb|EGF26350.1| error-prone DNA polymerase [Rhodopirellula baltica WH47] Length = 1056 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 268/1039 (25%), Positives = 471/1039 (45%), Gaps = 68/1039 (6%) Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69 +V L S++S L+GA + ++ + A +AITD ++ + A G+Q Sbjct: 15 RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 74 Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129 I+G ++ P +VL + Y R+ ++S + + K Sbjct: 75 IVGTEV----------------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCE-KGRC 117 Query: 130 RICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 + + E G+I S A +S Q F+ +F DR Y+ Sbjct: 118 ELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLR---GPFRDVFDDRGYLLA 174 Query: 187 QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245 HRG D + + + L+ ++PL+A + + S E HD ++A++ V Q Sbjct: 175 SFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQS 234 Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R V H+L++ E+ ++ D+P+A+ T E+A+RC+F L P + E Sbjct: 235 DRLVNSQHHLRSLEEIAELYRDVPDAVARTTEVAQRCTFTLDQLKYEYPVELAPEGM--- 291 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 L+ G R G + + L E+ +I +++ YFL V D + Sbjct: 292 -TSIEHLKRLTWEGARGRWPNGV------PEKVIETLRHEVTLIEDLQYEAYFLTVWDLV 344 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ I GRGS A SV Y L IT +DP LLFERF++ +R PD D+DF Sbjct: 345 RFARSQEIL-CQGRGSAANSVVCYCLGITAVDPTHTDLLFERFISRERGEAPDIDVDFEH 403 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EV++Y+ KYG +R +AK+A+R+VG+AL + +D + KL + Sbjct: 404 QRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAKLAGSYSR 463 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 +P + D P R L +++ L G RH S H G+V+ L +L Sbjct: 464 NPELPERCRD----AGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCELCV 519 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603 V Q+N ++ G++K D L L L+ +++ + + + LS IP Sbjct: 520 TENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRELSLSTIPP 579 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663 DD TY ++ T+G+FQ+ES L ++P C D++ V++ RPGPI +V+ Sbjct: 580 DDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNMVHPF 639 Query: 664 --RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 + + I +L++T GV I+QEQ M++A + +G++ EAD LRRAM Sbjct: 640 LAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMAAWR 699 Query: 722 KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + +D+ + + + G NG++ A N+F + F +YGF +SHAA++A++ Y + ++K Sbjct: 700 RPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYASCYLK 759 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------R 834 HYP F AA + + + +DA+Q +Q++P +N + K+ + + Sbjct: 760 RHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNRPHPK 819 Query: 835 IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893 + L ++G+ + A+ I+ A A+ PF +L D +R KL+R + +L A AL Sbjct: 820 LRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIATLADADALAS 876 Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953 R + Q + ++ + + A + D E+ + + + Sbjct: 877 IAQDRRAAVW---------QSLAQDDSGDSMPLLADLEP---DCSVPEELVPMSPAEEVK 924 Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013 N+ G HP+ ++ L + K + G ++R+A +V+ +Q+ T KG Sbjct: 925 NDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLVLMRQRPGTAKG- 983 Query: 1014 RIGWVTFSEPAKEYEANFF 1032 I +VT + F Sbjct: 984 -ITFVTMEDETGSMNLVLF 1001 >gi|254523352|ref|ZP_05135407.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] gi|219720943|gb|EED39468.1| DNA polymerase III, alpha subunit subfamily, putative [Stenotrophomonas sp. SKA14] Length = 1036 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 287/1043 (27%), Positives = 458/1043 (43%), Gaps = 86/1043 (8%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S++S GA + + A A+AITD +L + Q A G+ Sbjct: 6 PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + ++ P + LL + Y L +L++ K Sbjct: 66 LIVGAEFQVEDG----------------PKLALLCTDQTAYAGLCQLITTCRRRAA-KGE 108 Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188 R L + + + A L + F DRL++ ++ Sbjct: 109 YRCLRDDLLGLPD------------GLLCLWLDRQP--AATDLELLRTGFNDRLWLAVEL 154 Query: 189 HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247 H +D Q++Q H LPLVA+ + D L A+ H V++ R Sbjct: 155 HHEHDDAHRLQLLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + P+ R E L T+ IA RC F L+ PR + E D Sbjct: 214 LFPNGERHLRPRTALAQLYPRELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 ++ LR G+ R G R++++ EL +I + ++ YFL V D +++A Sbjct: 270 DSWLRVLVERGIPWRWKNGIEPAQ------RKQIEHELALIRQKNYASYFLTVQDIVRFA 323 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 + +I GRGS A S + L +T+IDP R +LLFERF++ +R PD DIDF +RR Sbjct: 324 RSKDIL-CQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHERR 382 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EV++YV N+YG ER A S + ++A+RDV RAL +P QV+ L + + H Sbjct: 383 EEVLQYVFNRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH-- 440 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + + R R P + RLL ++ +L RH S H G VI + PLS LVP+ Sbjct: 441 --VPLPETLRERGFDPETPLMRRLLSLTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606 +D V Q++ ++ GL+K D L L LT ++K L L Q G + I DD Sbjct: 499 AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIEDDDT 558 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666 TY +++ T+G+FQ+ES L MQP D++ V++ RPGPI +V+ + Sbjct: 559 PTYDMISAADTIGVFQIESRAQMAMLPRMQPRNFYDLVIEVAIVRPGPIQGDMVHPYLER 618 Query: 667 GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714 + + P ++ + T GV ++QEQVMQ+A +GY+ EAD LR Sbjct: 619 RRLLREQGPEALDNLEEPLYPPQLERVFARTLGVPLFQEQVMQLAVDAAGYTPGEADALR 678 Query: 715 RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773 R+M + + +E+ ++G KNG S+ ++FE + F DYGF +SHAA++A+++ Sbjct: 679 RSMAAWKRRGGLEPHREKLLAGMLKNGFSREYGEHLFEQIKGFGDYGFPESHAASFALLT 738 Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830 Y + W+K H+P F A+ + + + QDAR+ I+++P V D + Sbjct: 739 YASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPLDVRHSDWDCTLDIS 798 Query: 831 -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 G I L I G + IM A +PFD + D C R L+RR L AG Sbjct: 799 KGATAIRLGLRLIDGCNEPAVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 AL R + + + +F H + T ++ L S Sbjct: 856 ALRGLSGHRHRARWDISGV------------ENRLPLFDHARATAEARVPLPLPSAW--- 900 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + + R G HP+ + LR G + A G +R+A +V +Q+ +T Sbjct: 901 EDMQADYRSTGTTLGRHPISFLRAQLRTRGCLDAAQLAAHGHGRRVRIAGLVRMRQRPQT 960 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 G + ++T + A + Sbjct: 961 ASG--VTFLTLEDETGMVNAVVW 981 >gi|300697395|ref|YP_003748056.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957] gi|299074119|emb|CBJ53663.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957] Length = 1081 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 264/1073 (24%), Positives = 434/1073 (40%), Gaps = 111/1073 (10%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P + L S+++ L GA + ++ + A A+A+TD ++ + A AG++ Sbjct: 18 PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 I+G + + +VLL +GY L E +++ L K Sbjct: 78 LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125 Query: 129 VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183 R+ GL L G + + Q + L +++FGDRL Sbjct: 126 YRLLADD-LAAPAAGLAHLRGMRHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182 Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243 + L DR+R V +A ++PLVAT + S + HDVL A+ S +++ Sbjct: 183 LELPLRHADDRHR-GTVAAVAEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241 Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300 ++ F L +VE+A C F L P + E Sbjct: 242 GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELAALCDFSLDEIEYEYPHEVVPEG 301 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + L + +AG R + + ++ EL +IA +++ +FL V Sbjct: 302 ----QTPAAYLHAEVMAGAARRYGK------AIPAKVQAQIAEELALIAELRYEPFFLTV 351 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 D +++A+ +I GRGS A S Y L IT++DP + LF RFL+ R PD D+ Sbjct: 352 YDVVRFARSRSIL-CQGRGSAANSAVCYCLGITEVDPQSGNTLFARFLSRARNEPPDIDV 410 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF RR+EVI+Y+ KYG R A + + ++ALRDVGRAL + ++++ K Sbjct: 411 DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 A A + + P V R + +L G RH S H G VI LS Sbjct: 471 WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593 +LVP+ D V Q++ +E L+K D L L LT ++++LD A+ G Sbjct: 527 RLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586 Query: 594 VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651 L++ D +TY ++ T+G+FQ+ES + L ++P D++ V++ R Sbjct: 587 ASDKLAMQHLPDEDRDTYDMIGRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646 Query: 652 PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704 PGPI +V+ + + + P + +L+ T GV I+QEQVM+IA G Sbjct: 647 PGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706 Query: 705 YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762 ++ EAD LRR M K+ + Q+ + + FA+YGF Sbjct: 707 FTADEADRLRRDMAAWKRKGNLTEHQERLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766 Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822 +SHAA +A ++Y ++++K H P F AA + + + Q+AR+ ++++P V Sbjct: 767 ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826 Query: 823 TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874 D + + I L+ I+G+ A I+ A A PF S+ED R Sbjct: 827 ASAWDSTLHERPHGAGGQPDIRLGLSRIRGMRQPAAERIVAARAQAPFASVEDLAHRA-- 884 Query: 875 KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920 ALD R Q L +Q+ Q R Sbjct: 885 ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQ 929 Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980 + ++ L + + LG HPL + +P L +M Sbjct: 930 ARPV------------EVPL-ALPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976 Query: 981 KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 G R +V +Q+ T KG+ +V+ + +P Sbjct: 977 VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027 >gi|110636133|ref|YP_676341.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1] gi|110287117|gb|ABG65176.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp. BNC1] Length = 1096 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 283/1046 (27%), Positives = 456/1046 (43%), Gaps = 78/1046 (7%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + + + LQV S +S L GA S + A A+ I D ++L + + A A Sbjct: 1 MTAN-RYAELQVTSHFSFLRGASSAEELFAAAALMGIEALGIVDRSSLAGIVRAWEAAKA 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124 GI+ +IGC+LD+ SI++ + Y RL L+S Sbjct: 60 TGIRLVIGCRLDLACG----------------ASILVYPTDRAAYARLCRLLSLGKGR-A 102 Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184 GK + + L EG I L + + RL + +FGDR ++ Sbjct: 103 GKGKCHLEWTDLARY-AEGQIAL----------LVPDEADETCTMRLRRLRDVFGDRAHL 151 Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242 L R R D+ R ++ LA + V TN+ LF DV+ A+ H+T V Sbjct: 152 ALTLRRRPNDQMRLHELSGLASRMGVACVVTNDVLFHEPGRRVLQDVVTAIRHTTTVDAL 211 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 R D YLK+ EM +F+ PEAL TVEIA RC F L P DD Sbjct: 212 GFRRERHADRYLKSPEEMHRLFARYPEALARTVEIAERCRFSLDELVYQYPEER----DD 267 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + L G R G R L+ EL +IA++ ++ YFL V Sbjct: 268 PALSPQQTLERLTWEGAASRYPDGL------PDTVRATLNHELGLIAQLDYAPYFLTVHS 321 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ I GRGS A S Y L +T IDP R LLFERF++ +R PD D+DF Sbjct: 322 IVRFARSQGIL-CQGRGSAANSAVCYVLGVTSIDPDRNQLLFERFVSAERNEPPDIDVDF 380 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 DRR+EVI+++ YG +R A T +AK ALRDVG+AL +P + L + Sbjct: 381 EHDRREEVIQWIYATYGRDRAALCCTVIRYRAKGALRDVGKALGLPEDLISTLSTQVWGW 440 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 V Q + +AD + LE+++ L G RH S H G V+ L L Sbjct: 441 SEQEVGPQHVDQ----LNLNMADRRLRLTLELARALIGFPRHLSQHPGGFVLTRDRLDDL 496 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601 VP+ +++ I+ ++K D LGL L+ ++++LD LA+ DL+ I Sbjct: 497 VPIEPAAMEARQTIEWDKDDIDALRMMKVDVLGLGMLSCMRRALDLLAEHKGVALDLASI 556 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 557 PAEDPRTYAMIRRADTLGTFQIESRAQMSMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVH 616 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+ G+E + P ++ +L +T GV ++QEQ M +A +G++ EAD LRR+M Sbjct: 617 PYLRRREGREDVHYPKPELEAVLGKTLGVPLFQEQAMMVAVSCAGFTPGEADQLRRSMAT 676 Query: 720 KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 + K +++ ++G NG + A+ F+ L F YGF +SHAA++A+I+Y ++W Sbjct: 677 FKFTGGVSKFRDKLVAGMVANGYEEAFALATFKQLEGFGSYGFPESHAASFALIAYASSW 736 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833 +K +P F A + + + +DAR ++I P +N+ D + Sbjct: 737 VKCWHPDVFACALLNSQPMGFYADAQIVRDARDHGVEIRPVCINSSRWDCTLEPTADESR 796 Query: 834 -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892 + + +KG+ I+ A + F S++D R + L L A A Sbjct: 797 FAVRLGMRMVKGLPNRDVAAIVAAREELRFASVDDLWRRA---GVPTAALTRLAEADAFR 853 Query: 893 -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVE 946 FG +R + L ++ ++ +FA + Sbjct: 854 PAFGLARREALWAIRPLRDE-----------PLPLFAAAARHEPEPAPELPEPPVRLRPM 902 Query: 947 NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006 + G HP+ + L + I +++ G + A +++ +Q+ Sbjct: 903 TDGREVVEDYGHTGLSLRAHPVSFLRADLARRRIVPCAQAMGARDGRWLETAGLILVRQR 962 Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032 + KG + +VT + + + Sbjct: 963 PGSAKG--VMFVTVEDESGIANIVVW 986 >gi|325062696|gb|ADY66386.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3] Length = 1091 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 280/1049 (26%), Positives = 458/1049 (43%), Gaps = 83/1049 (7%) Query: 7 KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66 +P + LQV + +S L GA S + + ++ A+ I D N+L + + A G Sbjct: 2 STPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGIVDRNSLAAIPRAYEAADNHG 61 Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126 I+ +IGC+LD+D ++ + Y RL L+S + GK Sbjct: 62 IRLVIGCRLDLDDDLSVLV----------------YPMDRPAYGRLCRLLS-VGKKRGGK 104 Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 R+ L G EGLI++ + + RL K F DR Y+ L Sbjct: 105 GKCRLTWDDLVAYG-EGLIVV----------LLADLADDLCALRLRRLKAAFADRAYMAL 153 Query: 187 Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244 R R D+ R ++ +A ++P V TN+ LF E DV+ + H+ + + Sbjct: 154 SLRRRPNDQMRLFELSNMAAAADVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGF 213 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 R D Y+K EM +F+ PEAL ++EIA+RC+F L+ P Sbjct: 214 RRERHADRYMKPPQEMHRLFARYPEALARSLEIAKRCTFSLKELVYQYPEERSLPG---- 269 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L R G + + L EL +I R++++ YFL V + Sbjct: 270 LTAQQALEKLVWEAAAGRYPDGL------PEKVEKALHHELGLIGRLEYAPYFLTVNAIV 323 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 Q+A+ NI GRGS A SV Y L IT IDPL+ LLFERF++ +R PD D+DF Sbjct: 324 QFARGENIL-CQGRGSAANSVVCYVLGITAIDPLKVDLLFERFVSEERREPPDIDVDFEH 382 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI++V N YG ++ A + + ALRDVG+ L +P L + Sbjct: 383 QRREEVIQWVYNTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRW-- 440 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 S + + D + E++ +L G RH S H G V+ L +LVP Sbjct: 441 ---SEGVGEKQVQELNLNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLTHDRLDELVP 497 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603 + D + +++ I+ +K D L L L+ +++ + L +R VK DL+ +P Sbjct: 498 IEPAAMDDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMRRGFNMLEERTGVKYDLATVPQ 557 Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662 DD TY ++ TLG FQ+ES L ++P D++ V++ RPGPI +V+ Sbjct: 558 DDDPTYAMIQKADTLGTFQIESRAQMSMLPRLKPKIFYDLVIQVAIVRPGPIQGDMVHPY 617 Query: 663 -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721 R++ KE+ + +L +T GV ++QEQ M++A +G+S +AD LRRAM Sbjct: 618 LRRRDKKEEEHYPKEELRGVLGKTLGVPLFQEQAMRVAIECAGFSPGKADQLRRAMATFK 677 Query: 722 KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780 + K ++ I G G + A IF+ L F YGF +SHAA++A+I+Y ++W+K Sbjct: 678 NVGTISKFRQDMIDGMVDRGYEQEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWLK 737 Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833 H+P F A + + + +DAR +++ P VN D + Sbjct: 738 CHHPDIFCTALLNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCSLEPTGKKNANG 797 Query: 834 ----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + L +KG+ A I+ D+ F S++D R + L L A Sbjct: 798 KERYAVRLGLRMVKGLSNDHAAKIVACRQDRDFVSVDDLWRRA---GVPAAALVCLAEAD 854 Query: 890 AL-DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFS- 944 A SR + L ++ ++ +FA G + D+++ + Sbjct: 855 AFLPSLSLSRREALWAIKALRDE-----------PLPLFAAAAGRENAVVDELSEPSVAL 903 Query: 945 -VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003 + +G HP+ + L + I E+V G + A +V+ Sbjct: 904 RPMTDGGEVVQDYGHVGLTLREHPMSFLRRDLSRRRIVSCAEAVRVRDGTWLETAGLVLV 963 Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 +Q+ + KG + ++T + A + Sbjct: 964 RQRPGSAKG--VIFMTLEDETGIANAVLW 990 >gi|311744021|ref|ZP_07717827.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272] gi|311313151|gb|EFQ83062.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272] Length = 1133 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 280/1069 (26%), Positives = 462/1069 (43%), Gaps = 103/1069 (9%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS YS L+GA ++ ++ A+A+TD + A F++ A G+ + Sbjct: 57 YAELHCHSHYSFLDGASGPADLAEEAVRLGLSALALTDHDGFAGAPVFAEAAQEHGLATV 116 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + Q P +++L AEGY RL ++ +L K Sbjct: 117 FGAELSLGLPG-----PQNGVADPVGTHLLVLARGAEGYHRLAAAITDAHLHGDEKGRPV 171 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189 L L G + I+LTG G + A A L LFG D + V L H Sbjct: 172 YDLDQLAAHGRDHWIVLTGCRKGAVRHALATAGVSAAAAELDRLTALFGLDHVVVELTHH 231 Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEE-DYEAHDVLMAVAHSTVVSQKDRPR 247 D R + LA H LP+VAT N + A + A ++ Sbjct: 232 GLPDDSRRNDALASLAADHGLPVVATGNVHHATPAGGRLAAAMAAIRARRSLADLDGWLP 291 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 + +L++ +EM + F+ P A+ +V IA + +F L+ P LP Sbjct: 292 PSGAAHLRSGAEMQARFARYPGAVARSVTIAEQIAFDLRSVTPRLPVRGVPAG----HTN 347 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR A G+ R A R+R++ EL VIA F GYFLIV D ++ A Sbjct: 348 LSWLRELADRGIARRYAHDPGPA-------RERIERELAVIADKGFEGYFLIVHDIVREA 400 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++ I GRGS A S YAL IT +D +R+ L FERFL R PD D+DF DRR Sbjct: 401 RERGIL-CQGRGSSANSALCYALEITAVDSIRYGLPFERFLASTRDEEPDIDVDFDSDRR 459 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI++V + YG AQ+ + + ++A+RD +AL Q D + Sbjct: 460 EEVIQWVYDTYGRRNAAQVANVITYRPRSAIRDAAKALGYSTGQQDAWSRSAERWGG--- 516 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + D+ ++E++++L G RH H+ G+++ +RP+ ++ P+ R Sbjct: 517 ----LEPDAEL---------PAPVVELAEQLMGSPRHLGIHSGGMILTERPIGEVCPIER 563 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606 +D V Q++ E GL+KFD LGL L L + + G + L IP ++ Sbjct: 564 ARMTDRTVLQWDKDACEWMGLVKFDLLGLGMLGALDHTFGLVETHLGERWGLDTIPKEEP 623 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664 + +L ++G+FQ+ES L +QP D+ ++L RPGPI + Y R Sbjct: 624 GVFDMLCRADSIGVFQVESRAQIGTLPRLQPRSYYDLAIEIALIRPGPIQGGAVHPYIRR 683 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 G+E + HP+++P+L+ T+GV ++QEQ+MQ+A +L G + EAD+LRRAM K+ E Sbjct: 684 ATGREPVTYPHPVLEPVLRRTKGVPLFQEQLMQMAIVLGGCTGDEADLLRRAMGSKRGIE 743 Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783 +++ K++ +G +++GI+ A I+ + FA++GF +SHA ++A++ Y ++W+K HY Sbjct: 744 RIERLKDQLFTGMAEHGITGEAADAIYVTIQSFANFGFAESHALSFALLVYASSWLKLHY 803 Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP------------------------- 818 P FLAA + + + DAR + Sbjct: 804 PAAFLAALLRNQPMGFYSPQSLVADARHHGVTTRGPDIVRSMATADLEPLDARSVRASGL 863 Query: 819 ----PSVNTPCVDFKV------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862 P F + L A++GVG A ++ A ++PF Sbjct: 864 DSCLHREQPPMTRFDPDGVDPTTTHRRDEGLAVRLGLDAVQGVGAEVAARVVAAREERPF 923 Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922 + D R L +ESL AGA D FG +R Q L + Sbjct: 924 ADMADVARRT---ALTVAQMESLATAGAFDSFGLTRRQALWN----------------AG 964 Query: 923 HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982 + + GT + ++ + HP++ + +L + Sbjct: 965 YTDRPDQLPGTATTAPP-PTLPGMSAVETTLADLWSTRISPDRHPMEHLRELLTSEQVLS 1023 Query: 983 YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031 ++A G +R+A ++ +Q+ T G + ++ + Sbjct: 1024 VAGAMAGEHGRRVRVAGLITHRQRPMTASG--VTFLNLEDETGMLNVVV 1070 >gi|170785363|gb|ACB37722.1| DNA polymerase III alpha subunit [Micromonospora chalcea] Length = 1031 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 308/916 (33%), Positives = 465/916 (50%), Gaps = 34/916 (3%) Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQL 203 TG SG + A K ++ +FG D ++ L H +R + ++ Sbjct: 2 ATTGCPSGAVQTRLRLGQFDEAIKVASAYQDIFGKDNYFLELMDHGLDIERRVREGLTEI 61 Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263 +P V TN+S + E EAHDVL+ V + ++ +R R Y ++ + Sbjct: 62 GKKLGIPPVVTNDSHYTHEAQAEAHDVLLCVQTGSNIADPNRFRFEGGGYFIKSADQMRA 121 Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323 L+ + + + + EE+ R + GL R Sbjct: 122 VDSSELWLQGCRNTLLVAEKVDPAGMFEFHNLMPRFPIPEGETEESWFRKETFKGLARRF 181 Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383 G +Y EL VI +M F YFL+VADFIQWAK I VGPGRGS AG Sbjct: 182 PGGIPEGHVVQAEY------ELGVIIQMGFPSYFLVVADFIQWAKNQGIAVGPGRGSAAG 235 Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443 S+ AYAL ITD+DP+ L+FERFLNP+R+SMPD DIDF + RR EVI+YV +K+G ++V Sbjct: 236 SLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKV 295 Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPV--------SLQAIAD 494 AQI TFG+++AKAA++D R L PY+ DR+ K +P + A+ Sbjct: 296 AQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKHPRYAE 355 Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554 R +DP V ++++ ++ +EGL R HAAG+++ P+ + +P+ R + Sbjct: 356 AGEIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVI 415 Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLT 613 +TQF+ E GL+K DFLGL+ LT++ ++ G +DL + DD Y LL Sbjct: 416 ITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLA 475 Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671 TLG+FQL+ MR L M+PD EDI A+++LYRPGP+ D+ Y RKNG ++I Sbjct: 476 RGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEI 535 Query: 672 VSIHPLIDPML----KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727 IHP ++ L T G+I+YQEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK Sbjct: 536 TPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDK 595 Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787 + F G + G S ++++L FA Y FNK+H+AAY ++SY TA++K HYP E+ Sbjct: 596 EFVPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEY 655 Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847 +A +T D+ +K+ + + R+ IQ++PP VNT F I + LAAI+ VG Sbjct: 656 MAGLLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGA 715 Query: 848 TTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906 IM + + DF ++VD+ N++ +ESL+ AGA D G+SR LL Sbjct: 716 NVVASIMRCRQEKGEYADFYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHSRKGLLAVHA 775 Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKF--SVENSSVRFENEQRVLG 960 + V++ ++F G + + + + + E+ +LG Sbjct: 776 DAIDAYADVKRKEAVGQYDLFGAGFGDTETVGGNTTVMPTIGEAEWDKRDKLAFEREMLG 835 Query: 961 FYFSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 Y S HPL + +L G + LA ++ Q++ T++G Sbjct: 836 LYVSDHPLFGLEHVLGAAADCTIAALSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWAS 895 Query: 1018 VTFSEPAKEYEANFFP 1033 T + A EA FFP Sbjct: 896 ATLEDLAGGVEALFFP 911 >gi|258653321|ref|YP_003202477.1| error-prone DNA polymerase [Nakamurella multipartita DSM 44233] gi|258556546|gb|ACV79488.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM 44233] Length = 1092 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 276/1034 (26%), Positives = 468/1034 (45%), Gaps = 62/1034 (5%) Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70 + L HS++S L+GA + ++ + A+AITD + L+ + F++ A AG++ + Sbjct: 55 YAELHCHSAFSFLDGASTPEQLVAEAVRLGLEALAITDHDGLYGIVRFAEAAREAGLRTL 114 Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130 G +L + + + Q P P +++L EGY RL +SR L K Sbjct: 115 YGAELSLGLPE-----PQLGVPDPVGEHLLVLARGQEGYHRLSTQISRAQLAGGAKGRPV 169 Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL-QR 188 L L + ++LTG G + RA + A + L FG D + V L Sbjct: 170 YDLDELADAAGGHWLILTGCRKGSVRRALQRHGPARAAEELRALMDRFGRDNVVVELTTS 229 Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-EDYEAHDVLMAVAHSTVVSQKDRPR 247 D + LA +LP+VAT + + + E A + A ++ Sbjct: 230 LAPTDDEDNDALAALAAELDLPIVATTAAHYATPAEGRIAAAMAAVRARRSLEEADPYLP 289 Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307 P +L++ +EM ++F+ P A+ I R CSF L++ AP LP + D E Sbjct: 290 AGPGSHLRSGAEMAALFARYPAAVPTAAAIGRECSFDLRLLAPKLPPYDVPPGHD----E 345 Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367 + LR +AG R + Y +++ EL +IAR+ F GYFLIV D + + Sbjct: 346 NSHLRQLTLAGAARRYG----SPDDRPDAY-AQIEKELGIIARLDFPGYFLIVNDIVDFC 400 Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427 ++++I GRGS A S YAL IT +D +R+ LLFERFL P+R PD D+D DRR Sbjct: 401 RRSDIL-CQGRGSAANSAVCYALGITAVDAVRYELLFERFLAPERDGPPDIDVDIESDRR 459 Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487 +EVI+YV YG ++ AQ+ + + + A+RD+ +AL Q D K + Sbjct: 460 EEVIQYVFATYGRDKAAQVANVNTYRPRMAVRDMAKALGHSPGQQDAYSKQLDGWV---- 515 Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547 + A +L ++ +++ RH S H+ G+VI DRP++ + P+ Sbjct: 516 ----------PLAGQDASGIPADVLALAHRIQDYPRHLSIHSGGMVICDRPVASVCPVEW 565 Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606 + V Q++ GL+KFD LGL L+ L ++D + + ++D + + ++ Sbjct: 566 ARMENRSVLQWDKDDCAAMGLVKFDLLGLGMLSALHYAVDLIREHEGLEIDFAQLDLEEP 625 Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664 Y +L ++G+FQ+ES L ++P D++ V+L RPGPI Y R Sbjct: 626 AVYEMLQRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGNAVHPYIRR 685 Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723 +NG+E++ HP+++ L +T G+ ++QEQ+MQ+A ++G+ EAD LRRAM K+ K Sbjct: 686 RNGQEEVTYDHPVMEKSLAKTLGIPLFQEQLMQLAVDVAGFDAGEADQLRRAMGAKRSKG 745 Query: 724 EMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782 +M+K K R G ++GI+ +A I+E L FA++GF +SHA ++A + + +AW+K H Sbjct: 746 KMEKLKARLYDGMRERHGITGPVADRIYERLLAFANFGFAESHALSFAALVFYSAWLKLH 805 Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837 +P F AA + + + DAR+ + I P +N + + Sbjct: 806 HPAAFCAALLRAQPMGFYSPQSLVADARRHGVSIRRPDINASRAHADLEPGPDGRPAVRL 865 Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897 L ++ +G A I+ + + SL++ V L E+L AGALD + Sbjct: 866 GLDEVRTIGDELAARIVARRPTEGYRSLDELTRTV---TLTAPQAEALATAGALDTLVGT 922 Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957 R ++ + G + + + Sbjct: 923 RR----------HALWAAGAAAGDRAGTLAGSVVG-----LDAPALPGMSDIELTVADIW 967 Query: 958 VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017 G +P + + L G+K T G + +A +V +Q+ T G + + Sbjct: 968 ATGISPQTYPTEFSRDQLDAWGVKTAAALKDTAHGTRVLVAGVVTHRQRPATASG--VIF 1025 Query: 1018 VTFSEPAKEYEANF 1031 + + Sbjct: 1026 INLEDETGMLNVIC 1039 >gi|307301696|ref|ZP_07581455.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] gi|307316281|ref|ZP_07595725.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306898121|gb|EFN28863.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83] gi|306903394|gb|EFN33983.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C] Length = 1116 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 255/1063 (23%), Positives = 439/1063 (41%), Gaps = 90/1063 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + F L +++S LEGA ++ + I D N++ + KA Sbjct: 1 MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60 Query: 65 AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122 G QP G +L P I+ G+ L L+S L Sbjct: 61 EGYPFQP--GARLVFADG---------------TPDILAYPKNRRGWGHLCRLLSAGNLR 103 Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182 + K + L+ L E + + + E L T K+ G+RL Sbjct: 104 SK-KGDCTLHLADLLEWQE--------ELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRL 154 Query: 183 YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241 Y+ L H G+DR+ + + +A + L+ATN++L+ DV+ ++ ++ Sbjct: 155 YLGLAPHYDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIA 214 Query: 242 Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300 + + +LK EM +FSD PEA+ NT + R +F L + + Sbjct: 215 GAGFLLQKNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQY-----PDE 269 Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360 + + LR G R +G + +++D+EL +I K+ YFL V Sbjct: 270 NADGETPAESLRRLVAEGAAERYPEGV------PEKVMRQIDYELELIHDKKYEPYFLTV 323 Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420 +++A+ NI GRGS A S + L ITD+DP +F+LLF+RFL+ DR PD D+ Sbjct: 324 HKLVKFARSVNIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDV 382 Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480 DF +RR+EVI+Y+ YG E S ++++A R+V +A + L I Sbjct: 383 DFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIW 442 Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540 P + + ++ ADP R+L + L RH S H G VI L Sbjct: 443 GWGTSPFT----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLD 498 Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-- 598 ++VP+ D + +++ +++ ++K D L L LT L K L + Sbjct: 499 EVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLA 558 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 + Y ++ T+G+FQ+ES L +QP + D++ V++ RPGPI Sbjct: 559 EIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGN 618 Query: 659 VVYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713 +V+ K + + +V P + +L+ T GV ++QEQ MQIA +G+S SEAD L Sbjct: 619 MVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678 Query: 714 RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772 RRAM + + + + + G N + A F + F +YGF +SHAA++A + Sbjct: 679 RRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASL 738 Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832 Y +AW+KT+YP F AA + + + +DAR+ ++++P +N D + Sbjct: 739 VYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEG 798 Query: 833 -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869 + +KG+ T + ++ + + S+ D Sbjct: 799 EGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLW 857 Query: 870 SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929 R L+R VLE L A A G R L ++ + + + +F Sbjct: 858 LR---SGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVER-------LPLFEG 907 Query: 930 EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989 + + ++ R L HP+ + +MGI + AT Sbjct: 908 AGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRMGILRSRDLAAT 967 Query: 990 IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032 G + +A +V+ +Q+ + G + ++T + + Sbjct: 968 ATGRWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008 >gi|221199957|ref|ZP_03573000.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] gi|221206888|ref|ZP_03579900.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221173543|gb|EEE05978.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2] gi|221180196|gb|EEE12600.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M] Length = 1065 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 270/1053 (25%), Positives = 449/1053 (42%), Gaps = 72/1053 (6%) Query: 9 PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68 P++ L S++S L GA ++ + + IAITD +L A A AAG+ Sbjct: 3 PAYAELFCRSNFSFLHGASHAEELVARAVKLRYRGIAITDECSLAGAPRMHVAARAAGLP 62 Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128 IIG ++ + G P P +VLL EGY L EL+S + K + Sbjct: 63 LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 117 Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186 ++ L E L + + + + + V + ++ F+ FG+R + L Sbjct: 118 YKLTPRMLSRPPEEFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRATFGERARLGL 175 Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKD 244 Q R D + ++ + +VA + DV+ A+ T Sbjct: 176 VQLQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRLGTPVSECGY 235 Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304 + +L++ + + +FS A T I C F L P I Sbjct: 236 ALAPNAEQHLRSLARIAKLFSADEIA--QTCAILDACHFELDTLRYEYPDEIVPPG---- 289 Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364 + L + AG R QG + Q++ +EL++IA++ + +FL V D + Sbjct: 290 HTPTSYLEQETKAGAIERYPQGV------PEKVEQQIRYELDLIAKLSYEPFFLTVYDIV 343 Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424 ++A+ NI GRGS A S Y L IT++DP + +LLFERF++ +R PD D+DF Sbjct: 344 KYARSRNIL-CQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDVDFEH 402 Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484 RR+EVI+++ KYG R A + + + LR+ G+AL + VDR+ K Sbjct: 403 QRREEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDG 462 Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544 LQ A P + E++ +L RH S H+ G VI L++LVP Sbjct: 463 SRDLLQQFEMV----GLDPATPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVP 518 Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------VKVDL 598 + V Q++ +E GL+K D L L L+ L ++ D + Sbjct: 519 VENAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWRGLQPDGKPFGF 578 Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658 IP D +TY ++ T+G+FQ+ES L ++P D++ VS+ RPGPI Sbjct: 579 DHIPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQVSIVRPGPIQGG 638 Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711 V+ K + ++ + +L+ T GV I+QEQVMQIA + +G++ EAD Sbjct: 639 AVHPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAIVAAGFTPDEAD 698 Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770 LRRAM K ++ K ++ ++G + G ++ A IFE + F +YGF +SHAA++A Sbjct: 699 ALRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFA 758 Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830 ++Y ++W+K H P F+AA + + + QDAR+ + + P V + + Sbjct: 759 KLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSL 818 Query: 831 G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880 D + L+ ++G G AR I A A PF++++ R +L RR Sbjct: 819 EALPGAAPPDGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVDALARRA---QLERR 875 Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940 LE+L A AL R L + ++ A +++ Sbjct: 876 DLEALAAANALATLAGHRRDALW------------QAVAAAPDRDLLAAAPIDEAER--- 920 Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000 + + + G + HP+ + +P LR + E G R + Sbjct: 921 PALGAPSEADEILADYDTTGLTLNRHPVALLRPALRARRLSSAAELRDRPDGRLARACGI 980 Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033 V+++Q T KG + ++T + P Sbjct: 981 VIARQMPGTAKG--VLFMTLEDETGCVNVIVRP 1011 >gi|329909587|ref|ZP_08275095.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546430|gb|EGF31433.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 1039 Score = 562 bits (1449), Expect = e-157, Method: Composition-based stats. Identities = 257/1043 (24%), Positives = 459/1043 (44%), Gaps = 74/1043 (7%) Query: 5 LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63 + + P + L S+Y+ L GA ++++ A A+AITD +L + +A Sbjct: 1 MPQQLPPYAELHCLSNYTFLRGASHPEELIERAAGLGYTALAITDECSLAGVVRAHIEAK 60 Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123 G+ +IG ++ + ++LL + GY L +L++ Sbjct: 61 KHGLALLIGTEVTLRCGMK----------------LLLLATNRNGYGNLSQLITNGRRRA 104 Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183 K ++ + GL G + + + ++ +F R + Sbjct: 105 D-KGCYQLSIEDFVTPELAGL---AGCLAILLPERAHGGDQRQ--QQAQWLAHVFEARAW 158 Query: 184 VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242 + ++ HR D ++ L+ LPLVA + D + A+ +++ Sbjct: 159 IAVELLHRLDDDAWLQRLSALSQQTGLPLVAGGDVHMHLRSRKPLQDTVTAIRLGKPIAE 218 Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302 RS + LE T+ +A+RC+F L P I Sbjct: 219 CGLALHPNA-EQHLRSRLRLAQLYPRALLEQTLVVAQRCTFSLDELRYEYPLEIVPAG-- 275 Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362 + LR+ G R A G +++++ EL +I + + YFL V D Sbjct: 276 --ATLDGHLRSLTYEGAARRFATG------IPAKVQEQIEHELALIHDLAYEPYFLTVHD 327 Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422 +++A+ +I GRGS A SV Y L IT++DP R S+LFERF++ +R PD D+DF Sbjct: 328 IVRFARSRDIL-CQGRGSAANSVVCYCLGITEVDPERMSMLFERFISKERNEPPDIDVDF 386 Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482 RR+EVI+Y+ KYG R A + + ++AL+DVG+AL + + Q++RL Sbjct: 387 EHQRREEVIQYIYRKYGRHRAALTGVHITYRPRSALKDVGKALGIDFDQINRLSHSHQWW 446 Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542 VS + + + V +LLE+++ L G RH S H G VI L++L Sbjct: 447 EDGQVSDERLRES----GFDPDASLVQKLLELTRTLVGFPRHLSQHPGGFVIARDNLARL 502 Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601 VP+ + + +++ ++ G++K D L L L+ ++++LD + +RG + + Sbjct: 503 VPIENAAMPERSMIEWDKNDLDALGILKIDVLALGMLSAIRRALDLIGLRRGDIFTMQDV 562 Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661 P +D TY ++ T+G+FQ+ES L ++P+ ++ V++ RPGPI +V+ Sbjct: 563 PAEDPATYAMICAADTVGVFQIESRAQMSMLPRLRPEKFYHLVIEVAIVRPGPIQGGMVH 622 Query: 662 N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719 R+ G E+ + + L+ T GV I+QEQVMQ+ L +G++ +AD LRR+M Sbjct: 623 PYLRRRQGLEQATYANADMKLALERTLGVPIFQEQVMQVVMLAAGFTPGQADDLRRSMAA 682 Query: 720 K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778 K + K +E I G G + A +F + F +YGF +SHAA++A++ Y +AW Sbjct: 683 WKRKGGLQKFREPVIEGMLARGYNLEFAEGLFSQIEGFGEYGFPESHAASFALLVYVSAW 742 Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834 +K H P FLAA + + + QDAR+ ++++P V V+ + ++ Sbjct: 743 IKRHEPAAFLAALLNSQPMGFYGPSQLVQDARRHGVRVLPVDVMISEVECTLEEHAAELN 802 Query: 835 -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889 + L ++G+ A+ ++E A +PFDS++D R + + + + L + Sbjct: 803 AAQPDVRLGLCLVRGLSGQAAQRVIEVRAMRPFDSVDDMARRAELDQHDLKALAAANAL- 861 Query: 890 ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949 R Q + + + H T +TL S + Sbjct: 862 --FALAGHRRQANWEVAALL------------PVTPLLRHAPIT-EAALTLPAASEGHD- 905 Query: 950 VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009 + R G + HPL + +P LR+M + E G +R + +V +Q+ T Sbjct: 906 --IVADYRSTGLTLNRHPLALLRPRLRQMKLSTALELKGFGNGKLVRTSGLVTMRQRPGT 963 Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032 KG+ ++T + + Sbjct: 964 AKGTM--FITLEDETGVINVILW 984 >gi|110635592|ref|YP_675800.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1] gi|110286576|gb|ABG64635.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp. BNC1] Length = 1126 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 241/1069 (22%), Positives = 444/1069 (41%), Gaps = 90/1069 (8%) Query: 5 LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64 + +P++ V S++S L GA ++ A+ + D N + + ++ Sbjct: 1 MTAAPAYAEFGVQSNFSFLRGASRPEELVVAAKLLGFSAMGLADRNTVAGVVRAWVQSK- 59 Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPF------PTVPSIVLLVSTAEGYQRLIELVSR 118 I + + + P P I+ +G+ L ++++ Sbjct: 60 -----------YIKLTEESEPARLPYHPGCRLVFSDGTPDILAYPQDRQGWAHLCRMLTK 108 Query: 119 MYLLDQ-GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177 + ++ K + + E G + + + P D+ L K Sbjct: 109 ANMREESEKGAPVLLAEDFWEWGDQISLAILPDLQAPGDKTL---------AFLKAVKAR 159 Query: 178 FGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236 F + +++ + + G DR+R +Q +A +PL+ATN+ L+ + E DVL A+ Sbjct: 160 FKESVWLAVAPSYGGDDRWRLAQAAGMAEAVGVPLMATNDVLYHAAEQRSLQDVLTAIRL 219 Query: 237 STVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295 +T +S+ + ++K EM +F PEAL T+ A SF L P Sbjct: 220 NTTISEAGFALEANAERHMKPPEEMARLFRSYPEALAETLRFAESLSFSLSELEHNYPDE 279 Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355 + + + EL G + R +G + ++ + EL+++ R ++ Sbjct: 280 VSESGLP----AQEELERLTWEGAKERFPRG------IPEAQKELIRKELDLVKRKNYAR 329 Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415 YFL V D +++A+ I GRGS A S+ Y L ITD+ P L ERF++ +R Sbjct: 330 YFLTVYDIMRYARSQGIL-CQGRGSAANSLICYCLRITDVGPDIMDHLLERFISEERGEP 388 Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475 PD D+DF RR+EVI Y+ KY + A + S + + ALR+V + L + L Sbjct: 389 PDIDVDFEHQRREEVIAYIYEKYSEKHTALACSVISYRGRLALREVAKVLGLSEDVTSAL 448 Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535 I + V AI ADP +++ ++ + G RH S H G VI Sbjct: 449 SGSIWGWSSEEVGDTAIKA----AGLNKADPRTKQMVNLANGIMGFPRHLSQHVGGFVIT 504 Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595 L ++VP+ + + + +++ ++ GL+K D L L L+ LQ++ L ++ Sbjct: 505 KDRLDEIVPIVKTAMEERKMVEWDKDDLDNVGLLKVDVLALGMLSCLQRAFGLLKEKYDV 564 Query: 596 VD-------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648 D L+ I + Y +++ T+G+FQ+ES L +QP D++ V+ Sbjct: 565 RDDYGRPLELATIQPELEPVYDMISRADTIGVFQVESRAQMSMLPRLQPRTFYDLVIEVA 624 Query: 649 LYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706 + RPGPI +V+ R+ +EK + P ++ +LK+T GV ++QEQ M+IA + G+ Sbjct: 625 IVRPGPIQGDMVHPYLKRRERQEKPEYVRPELEAILKKTLGVPLFQEQAMKIAIVAGGFE 684 Query: 707 LSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765 EAD LRRAM + + K + I+G G + A F + F +YGF +SH Sbjct: 685 PWEADRLRRAMATFKRTGTVTDYKHKLINGMEARGYPRAFAERCFRQIEGFGEYGFPESH 744 Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825 AA++A++ Y +AW K +YP F AA + + + +DAR+ ++I +N+ Sbjct: 745 AASFALLVYASAWFKAYYPDVFCAAILNSQPMGFYAPAQLVRDAREHGVEIREVDINSSK 804 Query: 826 VDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863