RPSBLAST alignment for GI: peg_753 and conserved domain: TIGR00594
>gnl|CDD|161945 TIGR00594, polc, DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1022
Score = 1068 bits (2763), Expect = 0.0
Identities = 455/1035 (43%), Positives = 646/1035 (62%), Gaps = 26/1035 (2%)
Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQP 69
FVHL VHS YSLL+GA + ++ K PA+A+TD N+F A+EF KAC AGI+P
Sbjct: 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEF-YKACKKAGIKP 59
Query: 70 IIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
IIGC+ + K ++GK + ++LL GY+ L++L S YL +
Sbjct: 60 IIGCEAYVAPGSRFDKKRISKGKEAYH----LILLAKNNTGYRNLMKLSSLAYLEGFYYK 115
Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
RI L+E EGLI L+ SG + ++AE+ L ++++FGD Y+ LQ
Sbjct: 116 P-RIDKELLEEHS-EGLIALSACLSGEVPYLLLLGEERLAEEAALKYQEIFGDDYYLELQ 173
Query: 188 RHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
H E +++++ +PLVATN+ +++ ED AH++L+ + +S R
Sbjct: 174 DHGIPEQRVVNE-ALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKR 232
Query: 246 PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRFIEKECDDI 303
+ + + YLK+ EM +F+D+PEAL NTVEIA RC +++ P LP +
Sbjct: 233 LKFYSDEFYLKSPEEMAELFADIPEALANTVEIAERCNLVDVKLGPPRLPSYQIPPDF-- 290
Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
+E+ LR+ A GL RLA G AQ Y++RL++EL+VI M F GYFLIV DF
Sbjct: 291 -TSQEDYLRHLADEGLRERLAAGPPGYKRRAQ-YKERLEYELDVINSMGFPGYFLIVWDF 348
Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
I+WAK + IPVGPGRGS AGS+ AYAL ITDIDP++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 349 IKWAKDHGIPVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERISMPDIDIDFC 408
Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
+RRDEVI YV +KYGH+ VAQIITFG+++AKAALRDV R L +PY++ DR+ KLIP P
Sbjct: 409 DERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPYAEADRIAKLIPPRP 468
Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
+ +A+ + R+ DP V +L+++++KLEGL R+A HAAG+VI PL+ V
Sbjct: 469 GKTLK-EALEASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYV 527
Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
P+Y+D TQ++M +E GL+K DFLGLKTLTL+Q + + + +RG+ +D++ IP
Sbjct: 528 PLYKDKEGGAISTQYDMDDLEAVGLLKMDFLGLKTLTLIQDATELIRKRRGIDLDIASIP 587
Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
DD +T+ LL T G+FQLES GM+ L+ ++PD EDIIA+ +LYRPGP+++ ++
Sbjct: 588 LDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDIIAVNALYRPGPMESGMIPD 647
Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
+ +RK+G+E I HPL++P+LKET GVI+YQEQVMQIAQ L+G+SL EAD+LRRAMGKK
Sbjct: 648 FIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGKK 707
Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
EEM K++E+F+ GA KNG IA N+F+L+ KFA YGFNKSHAAAY +ISYQTA++K
Sbjct: 708 KAEEMAKEREKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLK 767
Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
+YP EF+AA +T E++++EK+ + +A++ I+++PP +N DF V D I Y L
Sbjct: 768 ANYPAEFMAALLTSEINDIEKVAVYIAEAKKMGIEVLPPDINESGQDFAVEDKGIRYGLG 827
Query: 841 AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
AIKGVG + + I+E PF SL DF +RVD KKLN++VLE+L+ AGA D G +R
Sbjct: 828 AIKGVGESVVKSIIEERNKNGPFKSLFDFINRVDFKKLNKKVLEALIKAGAFDSLGPNRK 887
Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
LL SLD+ +K ++F A +GT + + E+
Sbjct: 888 TLLASLDDALDAVSRKKKAEALGQNSLFGALSEGTKPEYVFFPPDEEWPDKKLLALEKET 947
Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGW 1017
LG Y SGHPLD Y+ L+ E + + +R + S ++K T K G + +
Sbjct: 948 LGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGLNSVKKKITTKNGKPMAF 1007
Query: 1018 VTFSEPAKEYEANFF 1032
+ + E F
Sbjct: 1008 LQLEDETGSIEVVVF 1022