RPSBLAST alignment for GI: peg_753 and conserved domain: TIGR00594

>gnl|CDD|161945 TIGR00594, polc, DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1022
 Score = 1068 bits (2763), Expect = 0.0
 Identities = 455/1035 (43%), Positives = 646/1035 (62%), Gaps = 26/1035 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQP 69
            FVHL VHS YSLL+GA  +  ++ K      PA+A+TD  N+F A+EF  KAC  AGI+P
Sbjct: 1    FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEF-YKACKKAGIKP 59

Query: 70   IIGCQLDIDMQDNL--KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IIGC+  +        K  ++GK  +     ++LL     GY+ L++L S  YL     +
Sbjct: 60   IIGCEAYVAPGSRFDKKRISKGKEAYH----LILLAKNNTGYRNLMKLSSLAYLEGFYYK 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L+E   EGLI L+   SG +         ++AE+  L ++++FGD  Y+ LQ
Sbjct: 116  P-RIDKELLEEHS-EGLIALSACLSGEVPYLLLLGEERLAEEAALKYQEIFGDDYYLELQ 173

Query: 188  RHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H         E  +++++    +PLVATN+  +++ ED  AH++L+ +     +S   R
Sbjct: 174  DHGIPEQRVVNE-ALLEISEELGIPLVATNDVHYINPEDAHAHEILLCIQTGKTLSDPKR 232

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-SFILQVHAPILPRFIEKECDDI 303
             +  + + YLK+  EM  +F+D+PEAL NTVEIA RC    +++  P LP +        
Sbjct: 233  LKFYSDEFYLKSPEEMAELFADIPEALANTVEIAERCNLVDVKLGPPRLPSYQIPPDF-- 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +E+ LR+ A  GL  RLA G       AQ Y++RL++EL+VI  M F GYFLIV DF
Sbjct: 291  -TSQEDYLRHLADEGLRERLAAGPPGYKRRAQ-YKERLEYELDVINSMGFPGYFLIVWDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK + IPVGPGRGS AGS+ AYAL ITDIDP++  LLFERFLNP+R+SMPD DIDFC
Sbjct: 349  IKWAKDHGIPVGPGRGSAAGSLVAYALKITDIDPIKHGLLFERFLNPERISMPDIDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI YV +KYGH+ VAQIITFG+++AKAALRDV R L +PY++ DR+ KLIP  P
Sbjct: 409  DERRDEVIEYVADKYGHDNVAQIITFGTMKAKAALRDVARVLDIPYAEADRIAKLIPPRP 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+    + R+    DP V +L+++++KLEGL R+A  HAAG+VI   PL+  V
Sbjct: 469  GKTLK-EALEASPQLRQLYEEDPEVKQLIDMARKLEGLNRNAGVHAAGVVISSEPLTDYV 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIP 602
            P+Y+D       TQ++M  +E  GL+K DFLGLKTLTL+Q + + +  +RG+ +D++ IP
Sbjct: 528  PLYKDKEGGAISTQYDMDDLEAVGLLKMDFLGLKTLTLIQDATELIRKRRGIDLDIASIP 587

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD +T+ LL    T G+FQLES GM+  L+ ++PD  EDIIA+ +LYRPGP+++ ++  
Sbjct: 588  LDDKKTFSLLQEGDTTGVFQLESRGMQDLLKRLKPDGFEDIIAVNALYRPGPMESGMIPD 647

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+G+E I   HPL++P+LKET GVI+YQEQVMQIAQ L+G+SL EAD+LRRAMGKK
Sbjct: 648  FIDRKHGREPIEYPHPLLEPILKETYGVIVYQEQVMQIAQRLAGFSLGEADLLRRAMGKK 707

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM K++E+F+ GA KNG    IA N+F+L+ KFA YGFNKSHAAAY +ISYQTA++K
Sbjct: 708  KAEEMAKEREKFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLK 767

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP EF+AA +T E++++EK+  +  +A++  I+++PP +N    DF V D  I Y L 
Sbjct: 768  ANYPAEFMAALLTSEINDIEKVAVYIAEAKKMGIEVLPPDINESGQDFAVEDKGIRYGLG 827

Query: 841  AIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKGVG +  + I+E      PF SL DF +RVD KKLN++VLE+L+ AGA D  G +R 
Sbjct: 828  AIKGVGESVVKSIIEERNKNGPFKSLFDFINRVDFKKLNKKVLEALIKAGAFDSLGPNRK 887

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             LL SLD+        +K       ++F A  +GT  + +                E+  
Sbjct: 888  TLLASLDDALDAVSRKKKAEALGQNSLFGALSEGTKPEYVFFPPDEEWPDKKLLALEKET 947

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGW 1017
            LG Y SGHPLD Y+  L+        E +     + +R    + S ++K T K G  + +
Sbjct: 948  LGLYVSGHPLDAYEKALKNTATPAAIEDLEAPNDSQVRTLGGLNSVKKKITTKNGKPMAF 1007

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +     E   F
Sbjct: 1008 LQLEDETGSIEVVVF 1022