RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= 537021.9.peg.753_1
(1033 letters)
>gnl|CDD|30932 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication,
recombination, and repair].
Length = 1139
Score = 1144 bits (2961), Expect = 0.0
Identities = 487/1036 (47%), Positives = 666/1036 (64%), Gaps = 28/1036 (2%)
Query: 8 SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
SFVHL VHS YSLL+GA + ++ K PA+A+TD NNL+ A+EF + A AGI
Sbjct: 1 EMSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGI 60
Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
+PIIGC+ + D P ++LL EGY+ L++L S YL + K
Sbjct: 61 KPIIGCEAYVANGDG--------FRGRERPHLLLLAKNNEGYKNLVKLSSIAYL-EGEKG 111
Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
RI L+ +EGLI L+ G + + + +AE+ L +K++FGD Y+ LQ
Sbjct: 112 KPRIDKDLLELEYSEGLIALSACLGGEVPQLLLKGNEDLAEEALAWYKEVFGDDFYLELQ 171
Query: 188 RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
RH DR R +++LA +PLVATN+ +++ ED EAHD L+ + +S R
Sbjct: 172 RHGSPEDRRRNDALIKLARELGIPLVATNDVHYINPEDREAHDALLCIRTGKTLSDDKRL 231
Query: 247 RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
R + + YLK+ EM +F+D+PEAL NTVEIA RC+F L + P LP F K
Sbjct: 232 RYSSAEQYLKSPEEMARLFADIPEALANTVEIAERCNFELDLG-PRLPNFPTPP----GK 286
Query: 306 EEENELRNKAVAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
LR A GLE R + + ++Y++RL++EL+VI +M F GYFLIV DF
Sbjct: 287 SAAEYLRKLAEEGLEERYKERLAPEEVPEKVREYKERLEYELDVINKMGFPGYFLIVWDF 346
Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
I++A+ N IPVGPGRGS AGS+ AYAL ITDIDPL++ LLFERFLNP+R+SMPD DIDFC
Sbjct: 347 IKFARDNGIPVGPGRGSAAGSLVAYALGITDIDPLKYDLLFERFLNPERVSMPDIDIDFC 406
Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
+RR+EVI+YV KYG +RVAQIITFG+L+AKAA+RDVGR L +PY +VD+L KLIP P
Sbjct: 407 DERREEVIQYVYEKYGRDRVAQIITFGTLRAKAAIRDVGRVLGLPYGEVDKLAKLIPFWP 466
Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
+ A ++ +E +DP V RL+E+++KLEGL RH STHAAG+VI D PL+ LV
Sbjct: 467 GLTL-AVAYEEEPELKELLDSDPEVKRLIELARKLEGLPRHLSTHAAGVVISDDPLTDLV 525
Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
P+Y+D D VTQ++M +E GL+KFDFLGLKTLT++Q++LD + ++ G+ +DL+ IP
Sbjct: 526 PLYKDKNRD-GVTQYDMDDLEAVGLLKFDFLGLKTLTIIQRALDLIKEKRGIDIDLASIP 584
Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVV 660
DD +TY +L TLG+FQLES GM+ L+ ++PD EDI+ALV+LYRPGP+ I
Sbjct: 585 LDDPKTYEMLAKGDTLGVFQLESRGMKSLLKRLKPDNFEDIVALVALYRPGPMQGGMIPP 644
Query: 661 YNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
+ NRK+G+E+I HP ++P+LKET GVI+YQEQVMQIAQ+L+G+SL EAD+LRRAMGK
Sbjct: 645 FINRKHGREEIEYPHPEPLEPILKETYGVIVYQEQVMQIAQVLAGFSLGEADLLRRAMGK 704
Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
K EEM+KQ+E+FI GA KNG K A IF+L+ KFA YGFNKSHAAAYA++SYQTA++
Sbjct: 705 KKAEEMEKQREKFIEGAVKNGYDKEFAEKIFDLIEKFAGYGFNKSHAAAYALLSYQTAYL 764
Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
K HYP EF+AA +T E N +K+ ++ Q+AR+ I+++PP +N DF V I
Sbjct: 765 KAHYPAEFMAALLTSEPMNFDKVAQYIQEARRMGIEVLPPDINRSGWDFTVEEKKAIRLG 824
Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
L AIKGVG I+EA +KPF SLEDFC R+D K LN+RVLESL+ AGA D FG +R
Sbjct: 825 LGAIKGVGEDAIEEIVEARKEKPFKSLEDFCDRIDRKGLNKRVLESLIKAGAFDSFGKNR 884
Query: 899 MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
QLL +LD++ A KN + ++F S++++ + + E+
Sbjct: 885 AQLLAALDDLLDAASGTAKN--SGQLSLFGAAAAGESEQVSYVALPEWSEKEKLALEKET 942
Query: 959 LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGW 1017
LG Y SGHPLD L G+ G + LA +V+ +Q+ T+ KG+++ +
Sbjct: 943 LGLYLSGHPLDFLYEDLLARGLTPIRLLDLVEDGRRVVLAGGIVAVRQRPTKAKGNKMAF 1002
Query: 1018 VTFSEPAKEYEANFFP 1033
+T + E FP
Sbjct: 1003 LTLEDETGILEVVVFP 1018
>gnl|CDD|32359 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type)
[DNA replication, recombination, and repair].
Length = 1444
Score = 131 bits (332), Expect = 7e-31
Identities = 199/942 (21%), Positives = 330/942 (35%), Gaps = 231/942 (24%)
Query: 78 DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
++ D L + K P + V G + L +LVS + RI S L+
Sbjct: 596 ELNDKLSSEDLYKRLRPK--HATIYVKNQVGLKNLYKLVS-ISHTKYFYGRPRIPRSVLK 652
Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK--RLLTFKKLFGDRLYVNLQRHRGYDRY 195
+ EGL++ + S G + A + E+ + F ++ Y +L G
Sbjct: 653 KN-REGLLIGSACSEGELFDAALQKPDEEVEEIAKFYDFIEIQPPANYAHLIEREGLKDK 711
Query: 196 RESQ-----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT- 249
+ +++L P+VAT N +L ED +L+A + T
Sbjct: 712 EALKEIIKKLIKLGKKLNKPVVATGNVHYLDPEDKIYRKILVASQGLGNPLNRTFNEQTL 771
Query: 250 PDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
P+ + + EM+ FS L E ENT +IA I + + IE ++
Sbjct: 772 PEVHFRTTDEMLQEFSFLGEEKAYEIVVENTNKIADMIEDIQPIKDKLYTPKIEG-AEEK 830
Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
++ E + + G + + QR++ ELN I F+ +LI
Sbjct: 831 VRDLTYE-KAHKIYGDPL------------PEIVEQRIEKELNSIIGNGFAVIYLISQKL 877
Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------FS 401
++ + + VG RGS S+ A + IT+++PL F
Sbjct: 878 VKKSLDDGYLVGS-RGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDGSVGSGFD 936
Query: 402 LL-------------------FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
L FE FL +PD D++F + + + YV+ +G +
Sbjct: 937 LPDKDCPKCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYVKELFGEDY 996
Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
V + T G++ K A V + Y++ R
Sbjct: 997 VFRAGTIGTVAEKTAYGYV-KKYFEDYNKFYR---------------------------- 1027
Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV------- 555
D +DRL Q G+ R H GI+I VP Y DV PV
Sbjct: 1028 --DAEIDRL---VQGCTGVKRTTGQHPGGIII--------VPKYMDVYDFTPVQFPADDT 1074
Query: 556 ------TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
T F+ I L+K D LG T+++ D +D IP DD E
Sbjct: 1075 NSEWKTTHFDFHAIHDN-LLKLDILGHDDPTMIKMLQDL-----TGIDPKTIPMDDPEVM 1128
Query: 610 --------------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
+ GTLGI + + +RQ LE +P +++ + L
Sbjct: 1129 KIFSSTESLGVTPEQIGEKTGTLGIPEFGTRFVRQMLEETKPKTFAELVRISGLSH---- 1184
Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI---AQLLSGYSLSEADV 712
V N ++ LI + VI ++ +M L + +
Sbjct: 1185 GTDVWLGNAQD----------LIKSGIATLSDVIGCRDDIMVYLIHKGLEPSLAFKIMEF 1234
Query: 713 LRRAMGKKIKEEMDKQKER-----FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
+R+ G K E + KE +I K Y F K+HAA
Sbjct: 1235 VRKGKGLKPAEYEELMKENKVPEWYIESCLK------------------IKYMFPKAHAA 1276
Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDN---------VEKIKKFCQD---------- 808
AY +++++ A+ K H+P+E+ AA ++ D+ E IK ++
Sbjct: 1277 AYVLMAWRIAYFKVHHPLEYYAAYFSIRADDFDIETMSKGKEAIKAKMEEINKRKGNKAS 1336
Query: 809 -----------------ARQFNIQIMPPSV-NTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
AR F Q + + +F + + + AI G+G A
Sbjct: 1337 PKEKNLLTVLEIVLEMLARGFKFQ--KIDLYKSDATEFVIDGDTLIPPFIAIPGLGENVA 1394
Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
+ I+EA +K F S ED R K+++ +E L G L+
Sbjct: 1395 KSIVEAREEKEFLSKEDLKKRT---KISKTHIEKLDEMGCLE 1433
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
V L H+ S ++ S+ ++ + AIAITD + + E + A GI+ I
Sbjct: 337 VELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIY 396
Query: 72 GCQLDIDMQDNLKM-TNQGKTPFPTVPSIVLLVST---AEGYQRLIEL 115
G + ++ + D + + N +V + T + Y +IE+
Sbjct: 397 GLEANL-VDDGVPIVYNPDDQKLDDATYVVFDIETTGLSPVYDEIIEI 443
>gnl|CDD|145785 pfam02811, PHP, PHP domain. The PHP (Polymerase and Histidinol
Phosphatase) domain is a putative phosphoesterase
domain.
Length = 173
Score = 79.9 bits (197), Expect = 3e-15
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
V L VH+ +SLL+GALS+ ++ AIAITD +NLF A EF + A AG++P
Sbjct: 1 VDLHVHTDFSLLDGALSIEELVKAAKELGLEAIAITDHDNLFGAPEFYEAAKLEKAGLKP 60
Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
IIG +++I ++ + S+ L++ + + L EL S Y D+
Sbjct: 61 IIGAEINIVDDEDEL-----DLEDDLLKSLDLVLLSVHEVRNLPELSSAAYTEDE----- 110
Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
L+ + EGLI++ G + A + AE+ L + G L +N
Sbjct: 111 -----LLEAVLEEGLIIILAHPEGYVGTALLGGPLEEAEELLEEYIGEDGFYLEINNSGL 165
Query: 190 RGYDRYRE 197
R ++ +
Sbjct: 166 RKEEKLND 173
>gnl|CDD|113683 pfam04919, DUF655, Protein of unknown function, DUF655. This
family includes several uncharacterized archaeal
proteins.
Length = 181
Score = 42.4 bits (100), Expect = 6e-04
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS-----KKLNRRVLESL 885
+ L + G+G I+E KPF+S ED RV K + R++E L
Sbjct: 116 HQLELLPGIGKKMMWAILEERKKKPFESFEDIKERVKGLHDPVKIIVERIIEEL 169
>gnl|CDD|31680 COG1491, COG1491, Predicted RNA-binding protein [Translation,
ribosomal structure and biogenesis].
Length = 202
Score = 39.9 bits (93), Expect = 0.004
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS-----KKLNRRVLESL 885
+ L + G+G T I+E KPF+S ED RV K + R+L+ L
Sbjct: 130 HQLELLPGIGKKTMWAILEERKKKPFESFEDIKERVKGLHDPAKMIAERILDEL 183
>gnl|CDD|72957 cd04485, DnaE_OBF, DnaE_OBF: A subfamily of OB folds corresponding to
the C-terminal OB-fold nucleic acid binding domain of
Thermus aquaticus and Escherichia coli type C replicative
DNA polymerase III alpha subunit (DnaE). The DNA
polymerase holoenzyme of E. coli contains two copies of
this replicative polymerase, each of which copies a
different DNA strand. This group also contains Bacillus
subtilis DnaE. Replication in B. subtilis and
Staphylococcus aureus requires two different type C
polymerases, polC and DnaE, both of which are thought to
be included in the DNA polymerase holoenzyme. At the B.
subtilis replication fork, polC appears to be involved in
leading strand synthesis and DnaE in lagging strand
synthesis..
Length = 84
Score = 39.0 bits (91), Expect = 0.006
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 996 RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
+A +V S ++++T+KG R+ +VT + E FP
Sbjct: 1 TVAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFP 38
>gnl|CDD|30958 COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP
family) [General function prediction only].
Length = 258
Score = 31.2 bits (70), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
L VH++ S G L+ ++++ A +AITD + + LE + A
Sbjct: 6 LHVHTTASD--GGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAA 52
>gnl|CDD|144128 pfam00416, Ribosomal_S13, Ribosomal protein S13/S18. This family
includes ribosomal protein S13 from prokaryotes and S18
from eukaryotes.
Length = 106
Score = 30.3 bits (69), Expect = 2.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 831 GDNRIYYSLAAIKGVGTTTARHI 853
G+ +I +L IKG+G A I
Sbjct: 9 GNKKIEIALTYIKGIGRRKANQI 31
>gnl|CDD|30448 COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal
structure and biogenesis].
Length = 121
Score = 30.1 bits (68), Expect = 3.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEA 856
G+ R+ +L I G+G A+ I +
Sbjct: 11 GNKRVVIALTYIYGIGRRRAKEICKK 36
>gnl|CDD|111435 pfam02534, TraG, TraG/TraD family. These proteins contain a P-loop
and walker-B site for nucleotide binding. TraG is
essential for DNA transfer in bacterial conjugation.
These proteins are thought to mediate interactions
between the DNA-processing (Dtr) and the mating pair
formation (Mpf) systems.
Length = 468
Score = 29.7 bits (67), Expect = 3.8
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 973 PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ---------KKTRKGSRIGWVTFSEP 1023
P L K+ I EE++ATIRG IRL + S Q K+ + + F+
Sbjct: 312 PSLGKLEI--LEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAAS 369
Query: 1024 AKEYEANFF 1032
E A +
Sbjct: 370 NDEETAKYI 378
>gnl|CDD|177059 CHL00137, rps13, ribosomal protein S13; Validated.
Length = 122
Score = 29.6 bits (67), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 834 RIYYSLAAIKGVGTTTARHIMEA---SADKPFDSLED 867
RI Y+L I G+G T+A+ I+E D L D
Sbjct: 14 RIEYALTYIYGIGLTSAKEILEKANIDPDIRTKDLTD 50
>gnl|CDD|38861 KOG3657, KOG3657, KOG3657, Mitochondrial DNA polymerase gamma,
catalytic subunit [Replication, recombination and
repair].
Length = 1075
Score = 29.6 bits (66), Expect = 5.0
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV--LLVSTAEGYQRLIELVSRMYLLDQGK 126
P++GCQ+ +L+ +G+ F +PS + ++ S+A + L+ LVS +L D K
Sbjct: 908 PVLGCQI----SRSLEKLPEGEPKF--LPSRINWVVQSSAVDFLHLL-LVSMQWLCDTYK 960
Query: 127 QSVRICLSWLQEI 139
R C+S E+
Sbjct: 961 IDARFCISIHDEV 973
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 29.5 bits (67), Expect = 5.8
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 846 GTTTARHIMEASAD--KPFDSLE 866
T T R IM A+A KP SLE
Sbjct: 205 ETATGRTIMRAAAPNLKPV-SLE 226
>gnl|CDD|133132 cd06601, GH31_lyase_GLase, GLases (alpha-1,4-glucan lyases) are
glycosyl hydrolase family 31 (GH31) enzymes that
degrade alpha-1,4-glucans and maltooligosaccharides via
a nonhydrolytic pathway to yield 1,5-D-anhydrofructose
from the nonreducing end. GLases cleave the bond
between C1 and O1 of the nonreducing sugar residue of
alpha-glucans to generate a monosaccharide product with
a double bond between C1 and C2. This family
corresponds to subgroup 2 in the Ernst et al
classification of GH31 enzymes.
Length = 332
Score = 29.0 bits (65), Expect = 6.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPT 95
P+ G +D+D QDN + FP
Sbjct: 39 PLDGLHVDVDFQDNYRTFTTNGGGFPN 65
>gnl|CDD|144576 pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase,
DNA binding domain. This domain is a 3 helical bundle.
Length = 85
Score = 28.7 bits (65), Expect = 8.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
+I++ L G A A G + P+ +VP +R VRSD + + K L+
Sbjct: 24 DIAKAL-GRPTAA--RAVGRALAKNPIPLIVPCHRVVRSDGKLGGYRGGLERKRALL 77
>gnl|CDD|30104 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle..
Length = 717
Score = 28.4 bits (63), Expect = 9.8
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------VKVDLSLIP 602
+RS + N +KAG + F +G K T L L+ L G +K +L ++
Sbjct: 564 LRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVS 623
Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
+G + QL+ SGM L+ MQ
Sbjct: 624 HQ---------FEGAQILSQLQCSGMVSVLDLMQ 648
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 12,332,575
Number of extensions: 669319
Number of successful extensions: 1691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 34
Length of query: 1033
Length of database: 6,263,737
Length adjustment: 104
Effective length of query: 929
Effective length of database: 4,016,401
Effective search space: 3731236529
Effective search space used: 3731236529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)