HHsearch alignment for GI: peg_754 and conserved domain: cd04485
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=97.87 E-value=4.6e-05 Score=52.47 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred CCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEE
Q ss_conf 87110028667614898501344333235553102787522105899999878752499828999841001677764269
Q 537021.9.peg.7 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89 (184)
Q Consensus 10 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~LR 89 (184)
T Consensus 7 ~~~k~~~tk~G~~-~a~------------~tleD~~g~~e~~~F~~~~~~~~-~~l~~~~~v~i~g~v~~~--~~~~~l~ 70 (84)
T cd04485 7 TSVRRRRTKKGKR-MAF------------VTLEDLTGSIEVVVFPETYEKYR-DLLKEDALLLVEGKVERR--DGGLRLI 70 (84)
T ss_pred EEEEEEECCCCCE-EEE------------EEEECCCCCEEEEECHHHHHHHH-HHHCCCCEEEEEEEEEEE--CCEEEEE
T ss_conf 9989985579998-999------------99943787499999699999988-874469889999999996--9989999
Q ss_pred EEECCCHHHHHHH
Q ss_conf 8650415899973
Q 537021.9.peg.7 90 LLWVESLEKKSME 102 (184)
Q Consensus 90 i~~vepLD~aAa~ 102 (184)
T Consensus 71 ~~~i~~l~~~~~~ 83 (84)
T cd04485 71 AERIEDLEDARER 83 (84)
T ss_pred EEEEEEHHHHHHH
T ss_conf 9994678998830