Query 537021.9.peg.754_1
Match_columns 184
No_of_seqs 84 out of 86
Neff 3.6
Searched_HMMs 33803
Date Tue May 24 23:33:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_754.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2hpi_A DNA polymerase III alp 97.1 0.00027 8E-09 47.3 2.8 78 8-102 27-104 (105)
2 >3ebe_A Protein MCM10 homolog; 92.3 0.086 2.5E-06 31.8 2.4 72 11-98 67-141 (149)
3 >3f2b_A DNA-directed DNA polym 92.1 0.14 4.2E-06 30.4 3.4 75 11-99 28-104 (110)
4 >1xtz_A Ribose-5-phosphate iso 88.7 1.5 4.4E-05 24.1 6.1 64 113-177 14-82 (88)
5 >1m0s_A Ribose-5-phosphate iso 88.4 0.36 1.1E-05 27.9 2.8 59 114-177 13-71 (77)
6 >1o8b_A Ribose 5-phosphate iso 86.4 0.59 1.7E-05 26.6 2.9 59 114-177 10-68 (74)
7 >1uj6_A Ribose 5-phosphate iso 84.6 1.7 4.9E-05 23.9 4.5 59 114-177 12-74 (80)
8 >1sc6_A PGDH, D-3-phosphoglyce 83.2 3.7 0.00011 21.7 6.0 69 106-180 12-82 (83)
9 >3hhe_A Ribose-5-phosphate iso 82.3 1.4 4.2E-05 24.3 3.4 36 142-177 46-81 (87)
10 >2f8m_A Ribose 5-phosphate iso 78.5 4.3 0.00013 21.3 4.8 63 114-177 11-78 (84)
11 >3k5p_A D-3-phosphoglycerate d 72.0 7.9 0.00023 19.6 6.8 70 105-180 12-83 (84)
12 >2jhe_A Transcription regulato 69.5 2.4 7.1E-05 22.9 1.7 60 112-180 9-70 (73)
13 >2ko1_A CTR148A, GTP pyrophosp 60.7 13 0.00039 18.3 5.3 70 106-181 7-79 (88)
14 >2z51_A NIFU-like protein 2, c 57.4 15 0.00045 17.9 5.9 61 117-180 6-73 (73)
15 >1lk5_A D-ribose-5-phosphate i 53.0 11 0.00033 18.7 2.7 35 143-177 172-206 (229)
16 >1gm5_A RECG; helicase, replic 50.0 15 0.00045 17.9 3.0 57 40-97 32-88 (89)
17 >1uwd_A Hypothetical protein T 41.7 27 0.00079 16.4 4.4 61 118-178 9-79 (88)
18 >2z4i_A Copper homeostasis pro 37.4 31 0.00092 16.0 4.3 36 44-79 33-69 (120)
19 >1bxy_A Protein (ribosomal pro 33.9 17 0.00049 17.6 1.2 23 158-180 37-59 (60)
20 >3kwm_A Ribose-5-phosphate iso 33.4 36 0.0011 15.6 3.0 37 141-177 165-201 (224)
21 >3cq1_A Putative uncharacteriz 29.5 42 0.0012 15.2 2.6 61 117-178 8-78 (103)
22 >1ygy_A PGDH, D-3-phosphoglyce 28.8 43 0.0013 15.1 5.1 68 107-180 5-74 (77)
23 >2zjr_W 50S ribosomal protein 28.1 30 0.0009 16.0 1.7 21 159-179 35-55 (55)
24 >1qht_A Protein (DNA polymeras 23.7 33 0.00097 15.8 1.2 66 110-179 7-77 (79)
25 >1l1o_C Replication protein A 23.4 54 0.0016 14.5 4.0 60 37-96 81-162 (162)
26 >2gn0_A Threonine dehydratase 22.2 44 0.0013 15.0 1.6 34 19-53 48-81 (81)
27 >2pjm_A Ribose-5-phosphate iso 21.8 58 0.0017 14.3 3.4 34 143-177 171-204 (226)
28 >1eex_A Propanediol dehydratas 21.4 54 0.0016 14.5 1.9 24 157-180 244-267 (268)
29 >1th5_A NIFU1; iron-sulfur clu 20.2 52 0.0015 14.6 1.6 56 116-180 12-73 (74)
30 >3i1n_Z 50S ribosomal protein 20.2 48 0.0014 14.8 1.5 21 159-179 39-59 (59)
No 1
>>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128)
Probab=97.14 E-value=0.00027 Score=47.31 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 68871100286676148985013443332355531027875221058999998787524998289998410016777642
Q 537021.9.peg.7 8 KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDS 87 (184)
Q Consensus 8 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~ 87 (184)
.-.+.+.+++-+|+. ++| +...|.||++++..|.+..++-+ .+|++|.+++|....+ + .++.+
T Consensus 27 ~v~~~~~~~tk~G~~-~a~------------~~leD~tg~~e~~~F~~~~~~~~-~~l~~~~~v~i~g~v~-~--~~~~~ 89 (105)
T 2hpi_A 27 MVEEVVRKPTRSGGM-MAR------------FTLSDETGALEVVVFGRAYEGVS-PKLKEDIPLLVLAEVE-K--GEELR 89 (105)
T ss_dssp EECCC-------------C------------EEEEETTEEEEEC--------------CTTCEEEEEEEEC--------C
T ss_pred EEEEEEECCCCCCCE-EEE------------EEEEECCCCEEEEECHHHHHHHH-HHHCCCCEEEEEEEEE-E--CCCEE
T ss_conf 998999701789997-999------------99998998789998479999998-8851498799999999-7--89528
Q ss_pred EEEEECCCHHHHHHH
Q ss_conf 698650415899973
Q 537021.9.peg.7 88 IRLLWVESLEKKSME 102 (184)
Q Consensus 88 LRi~~vepLD~aAa~ 102 (184)
+.+..+.||+++.++
T Consensus 90 l~v~~i~~l~~~~~~ 104 (105)
T 2hpi_A 90 VLAQAVWTLEEVLEA 104 (105)
T ss_dssp EEEEEEEEHHHHTTS
T ss_pred EEEEECCCHHHHHCC
T ss_conf 999663659999701
No 2
>>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A (A:1-149)
Probab=92.27 E-value=0.086 Score=31.80 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=54.5
Q ss_pred CCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCC---CEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 711002866761489850134433323555310278---75221058999998787524998289998410016777642
Q 537021.9.peg.7 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDP---NFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDS 87 (184)
Q Consensus 11 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~ 87 (184)
+.+.+.+.+|+. |+| +...|.+| ++.++.|..++++-+ .+|+.+..++|....+ .+.++.+
T Consensus 67 ~~~~~~tk~g~~-~a~------------~~l~D~~g~~~~ie~~iF~~~~~~~~-~~l~~~~~~~i~g~v~--~~~~~~~ 130 (149)
T 3ebe_A 67 KITPQSSNNGKT-FSI------------WRLNDLKDLDKYISLFLFGDVHKEHW-KTDQGTVIGLLNANPM--KPKEGTD 130 (149)
T ss_dssp EECC-------C-CEE------------EEEECSSSTTCCEEEEECHHHHHHHT-TCCTTEEEEEESCEEC--CCCTTCC
T ss_pred CCCCEECCCCCC-EEE------------EEEECCCCCCEEEEEEEECHHHHHHC-CCCCCEEEEEECCCCC--CCCCCCC
T ss_conf 577127368984-799------------99760678860899999566878650-7588429999899017--7889987
Q ss_pred EEEEECCCHHH
Q ss_conf 69865041589
Q 537021.9.peg.7 88 IRLLWVESLEK 98 (184)
Q Consensus 88 LRi~~vepLD~ 98 (184)
+...+|.++++
T Consensus 131 ~~~~~v~~~~~ 141 (149)
T 3ebe_A 131 EVCLSVDNPQK 141 (149)
T ss_dssp CEEEECSSGGG
T ss_pred CEEEEECCCCC
T ss_conf 25899768241
No 3
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:1-110)
Probab=92.09 E-value=0.14 Score=30.42 Aligned_cols=75 Identities=8% Similarity=-0.031 Sum_probs=56.0
Q ss_pred CCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHH--HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCE
Q ss_conf 71100286676148985013443332355531027875221058--9999987875249982899984100167776426
Q 537021.9.peg.7 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQ--QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSI 88 (184)
Q Consensus 11 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~L 88 (184)
+.+-+.+-.|+. ++| +...|.||++.+..|. ..+++-+ ..|.+|..|+|.-.-+-.-...+.++
T Consensus 28 ~~~~~~tK~G~~-~~~------------~~l~D~tg~ie~~~F~~~~~~~~~~-~~l~~g~~v~v~G~v~~~~~~~~~~l 93 (110)
T 3f2b_A 28 DAEVSELKSGRT-LLT------------MKITDYTNSILVKMFSRDKEDAELM-SGVKKGMWVKVRGSVQNDTFVRDLVI 93 (110)
T ss_dssp EEEEEECTTSCE-EEE------------EEEECSSCEEEEEEECSSHHHHHHH-HTCCTTCEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEECCCCE-EEE------------EEEEECCCCEEEEEECCCCCHHHHH-HHCCCCCEEEEEEEEECCCCCCCEEE
T ss_conf 778787058988-999------------9998278868999955874328898-50679968999998851577774278
Q ss_pred EEEECCCHHHH
Q ss_conf 98650415899
Q 537021.9.peg.7 89 RLLWVESLEKK 99 (184)
Q Consensus 89 Ri~~vepLD~a 99 (184)
.+..+.||+++
T Consensus 94 ~v~~i~~i~~~ 104 (110)
T 3f2b_A 94 IANDLNEIAAN 104 (110)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEECCCC
T ss_conf 72123654775
No 4
>>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} (A:153-240)
Probab=88.67 E-value=1.5 Score=24.13 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 8015789999961122-----1037888713999974898547999668970789899987406462111
Q 537021.9.peg.7 113 DRSPLREIHKYFENRQ-----TQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 113 D~~pL~sI~s~Le~~~-----~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
.+-+...+.++|+... +.+..+.+.-.. ++-++|..-+++..+...--.++..+||++|||++.
T Consensus 14 ~pf~~~~v~~~l~~~g~~~~lR~r~~~~~k~gp-~iTDnGN~I~D~~f~~i~dp~~l~~~L~~i~GVVe~ 82 (88)
T 1xtz_A 14 VPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGP-VVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVET 82 (88)
T ss_dssp CGGGHHHHHHHHHHTSCCSEEEECEETTTEEEE-CCCTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-EECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 343699999999986079860574157666785-071599769982689878999999987079989956
No 5
>>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} (A:126-202)
Probab=88.45 E-value=0.36 Score=27.93 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 0157899999611221037888713999974898547999668970789899987406462111
Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
+-+...+.+.|+.. +|......-++.++|..-+++..+...=-.++...|+++|||++.
T Consensus 13 P~a~~~v~~~l~~l-----G~~~~lR~p~iTDnGN~IlD~~f~~i~d~~~l~~~L~~i~GVVe~ 71 (77)
T 1m0s_A 13 PMARSQVGRKLAAL-----GGSPEYREGVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTN 71 (77)
T ss_dssp GGGHHHHHHHHHHT-----TCEEEECTTCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 67889999999982-----899523787372899979982389879999999997189989613
No 6
>>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} (A:128-201)
Probab=86.36 E-value=0.59 Score=26.64 Aligned_cols=59 Identities=7% Similarity=0.082 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 0157899999611221037888713999974898547999668970789899987406462111
Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
+-+...+.+.|+.. ++......-++.++|..-+++..+...--..+...|+++|||++.
T Consensus 10 pf~~~~v~~~l~~~-----g~~~~lR~p~iTDnGN~IiD~~~~~i~d~~~l~~~L~~i~GVVE~ 68 (74)
T 1o8b_A 10 PXARSAVARQLVKL-----GGRPEYRQGVVTDNGNVILDVHGXEILDPIAXENAINAIPGVVTV 68 (74)
T ss_dssp GGGHHHHHHHHHHT-----TCEEEECTTCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHHHH-----CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 76899999999983-----798435788575899879992289879999999997179989831
No 7
>>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210)
Probab=84.62 E-value=1.7 Score=23.85 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 015789999961122103788871399----9974898547999668970789899987406462111
Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGL----IFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~L----vli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
+-+...+..+|+.. +++..++. -++.++|..-+++..+.+.--.++...|+++|||++.
T Consensus 12 p~~~~~v~~~l~~l-----G~~~~lR~~~~gp~vTDnGN~IiD~~~~~i~d~~~l~~~L~~i~GVVe~ 74 (80)
T 1uj6_A 12 PFGYRATLKAIADL-----GGEPELRXDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVET 74 (80)
T ss_dssp STTHHHHHHHHHTT-----TCCEEECEETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEE
T ss_pred CCHHHHHHHHHHHH-----CCCEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 20269999999972-----8964894179802894799889991289989999999998679999802
No 8
>>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:322-404)
Probab=83.25 E-value=3.7 Score=21.70 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=47.9
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 10999738-0157899999611221037888713999974898547999668-970789899987406462111030
Q 537021.9.peg.7 106 SLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 106 gLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184)
.|+++..| +..|..|.+.|... |=.=.++............+.+. ......++..+|+.++||.+|.-+
T Consensus 12 ~l~i~~~D~pGvla~Is~~l~~~------~iNI~~~~~~~~~~~~~a~i~i~vd~~~~~~i~~~l~~l~~V~~V~~l 82 (83)
T 1sc6_A 12 RLXHIHENRPGVLTALNKIFAEQ------GVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQAXKAIPGTIRARLL 82 (83)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHT------TCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC------CCCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 89998358776689999999876------998799753677545699999844787549999999738988999860
No 9
>>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} (A:148-234)
Probab=82.32 E-value=1.4 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=31.1
Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 974898547999668970789899987406462111
Q 537021.9.peg.7 142 FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 142 li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
++.++|..-+++..+...--.++...||++|||++.
T Consensus 46 ~iTDnGN~IiD~~f~~i~d~~~l~~~L~~i~GVVe~ 81 (87)
T 3hhe_A 46 FKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEH 81 (87)
T ss_dssp CCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEE
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 176899989967689979999999998379999604
No 10
>>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} (A:140-223)
Probab=78.46 E-value=4.3 Score=21.28 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCEEEEEECCC-CCCCHHHHHHHHHCCCHHEH
Q ss_conf 015789999961122103788871399----99748985479996689-70789899987406462111
Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGL----IFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~L----vli~~~~~~EVEI~Lp~-f~VSPqIagALKsIpGVl~V 177 (184)
+-+...+..+|+.... ..+++...+. -++.++|..-+++..++ ..=--++...|+++|||++.
T Consensus 11 pf~~~~v~~~l~~l~~-~~G~~~~lR~~~~gp~iTDnGN~IiD~~f~~~i~dp~~l~~~L~~i~GVVe~ 78 (84)
T 2f8m_A 11 TFGYEKIIENLLKIYT-LKGCTYKIRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDH 78 (84)
T ss_dssp STTHHHHHHHHTTSTT-TTTCEEEECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEE
T ss_pred CCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 3127999999999860-5798636786499642846998899834897768999999997579999803
No 11
>>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:333-416)
Probab=72.02 E-value=7.9 Score=19.65 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 110999738-0157899999611221037888713999974898547999668-970789899987406462111030
Q 537021.9.peg.7 105 DSLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 105 kgLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184)
..|++.++| +..|..|.+.|..+ |=.=-++.....+......+.+. .-....++..+|+.++||.+|.-+
T Consensus 12 ~~l~i~~~d~pGvla~I~~~l~~~------~iNI~~~~~~~~~~~~~a~i~i~~d~~~~~~i~~~l~~l~~V~~v~~i 83 (84)
T 3k5p_A 12 TRFMHVHENRPGILNSLMNVFSHH------HINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 83 (84)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHT------TCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHC------CCCHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 549985035125999999999876------998788640255746699998236776569999999718888999874
No 12
>>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} (A:1-73)
Probab=69.52 E-value=2.4 Score=22.85 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=39.6
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 380157899999611221037888713999974898547999668--970789899987406462111030
Q 537021.9.peg.7 112 QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 112 rD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~VSPqIagALKsIpGVl~VeEi 180 (184)
+-+.-+..|.+.+... .+.+.-+..+....+.+.+. ...--.++..+||.+|||.+|.-+
T Consensus 9 Dr~GlL~dI~~vis~~---------~~nI~~~~~~~~~~i~l~iev~~~~~L~~ii~~L~~i~gV~~V~Rv 70 (73)
T 2jhe_A 9 DRLGLTRELLDLLVLR---------GIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV 70 (73)
T ss_dssp SCTTHHHHHHHHHHHT---------TCCEEEEEEETTTEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHC---------CCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0154499999999866---------9549999972464199933444657899999999987506566533
No 13
>>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:)
Probab=60.69 E-value=13 Score=18.26 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=49.0
Q ss_pred CEEEE-EECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCHHHHHHHHHCCCHHEHHHHH
Q ss_conf 10999-7380157899999611221037888713999974898547999668--9707898999874064621110303
Q 537021.9.peg.7 106 SLRVY-LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYPISPEIAFDLEHITGITKVVQVI 181 (184)
Q Consensus 106 gLRIf-VrD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~VSPqIagALKsIpGVl~VeEi~ 181 (184)
.|+|+ .+.+..|..|.+.|... |-.-.++.....++...+.+.+. ....-.++..+|+.++||.+|.-+.
T Consensus 7 ~l~v~~~DrpGlL~~It~~la~~------~inI~~i~~~~~~~~~~~~~~v~v~d~~~l~~ii~~l~~i~~V~~V~r~~ 79 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKF------DTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLS 79 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTS------SSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred EEEEEEECCCCHHHHHHHHHHHC------CCEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999966878899999999987------98299999982699899999999999999999999997799987899986
No 14
>>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154)
Probab=57.38 E-value=15 Score=17.91 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHHHH-HHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHH-----HCCCHHEHHHH
Q ss_conf 789999961-1221037888713999974898547999668-9707898999874-----06462111030
Q 537021.9.peg.7 117 LREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLE-----HITGITKVVQV 180 (184)
Q Consensus 117 L~sI~s~Le-~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALK-----sIpGVl~VeEi 180 (184)
...|...|+ .+-....+|.|-|.|+-+.+ +.|-+.|. .+.=-|.++..+. .+|.|..|+.+
T Consensus 6 ~~~I~~~L~~iRP~L~~DggGdielv~v~~---~~V~v~l~GaC~gCpTl~~~Ie~~l~~~ip~i~~V~~V 73 (73)
T 2z51_A 6 EENIEKVLEEIRPYLIGTADGSLDLVEIED---PIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 73 (73)
T ss_dssp HHHHHHHHHHHGGGCCGGGCCEEEEEEEET---TEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEEEEC---CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 245566543035887778885399999969---98999965886677539999999999869996189969
No 15
>>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} (A:)
Probab=53.01 E-value=11 Score=18.74 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=28.2
Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 74898547999668970789899987406462111
Q 537021.9.peg.7 143 LRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 143 i~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
+.++|..-+++..+...=..++...|+++|||++.
T Consensus 172 itd~Gn~i~D~~~~~~~~~~~~~~~l~~i~Gvve~ 206 (229)
T 1lk5_A 172 ITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIEN 206 (229)
T ss_dssp CCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEE
T ss_pred ECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 73699869967789979999999998789979975
No 16
>>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:160-248)
Probab=50.03 E-value=15 Score=17.86 Aligned_cols=57 Identities=9% Similarity=-0.158 Sum_probs=39.0
Q ss_pred HHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCHH
Q ss_conf 5310278752210589999987875249982899984100167776426986504158
Q 537021.9.peg.7 40 QEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE 97 (184)
Q Consensus 40 ~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~LRi~~vepLD 97 (184)
...|.||...+.-|.+....-+ ..|.+|+.+++.-.-+-.-...+..+..-.++.+|
T Consensus 32 ~l~D~tg~i~~v~F~~~~~~~~-~~l~~g~~~~v~Gkv~~~~~~g~~~i~~p~~~~~d 88 (89)
T 1gm5_A 32 VLSDGLVHVPLKWFNQDYLQTY-LKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKE 88 (89)
T ss_dssp EECCSSCCEEEEECSCCTTHHH-HHTTCSSCEEEEEEECSCCTTSSCCEEEEEEECSC
T ss_pred EEEECCEEEEEEEECCHHHHHH-HHHCCCCEEEEEEEEEECCCCCEEEEECCEEECCC
T ss_conf 9998986899999798799976-50359998999999987687886996298774356
No 17
>>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88)
Probab=41.65 E-value=27 Score=16.38 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHHH----HHCCCCCCCCEEEEEECCCCCEEEEEECC--CC----CCCHHHHHHHHHCCCHHEHH
Q ss_conf 8999996112----21037888713999974898547999668--97----07898999874064621110
Q 537021.9.peg.7 118 REIHKYFENR----QTQNYDKQGKIGLIFLRSQGKIEIEITLD--HY----PISPEIAFDLEHITGITKVV 178 (184)
Q Consensus 118 ~sI~s~Le~~----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f----~VSPqIagALKsIpGVl~Ve 178 (184)
..|.+.|+.= ...+.-.-|-|.=+.+.++|.-.|.+.|+ .+ .+.-+++.+|+.++||.+|+
T Consensus 9 ~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~dg~V~v~i~l~~~~~~~~~~l~~~i~~~l~~l~gv~~v~ 79 (88)
T 1uwd_A 9 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVE 79 (88)
T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEE
T ss_pred HHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999985688999993714436044566514565368886378999628999999999997389975089
No 18
>>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A* (A:114-233)
Probab=37.44 E-value=31 Score=15.97 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=28.1
Q ss_pred CCCCEEEEEHHHHHHHHHHHHH-CCCCEEEEEEECCC
Q ss_conf 2787522105899999878752-49982899984100
Q 537021.9.peg.7 44 EDPNFLSLQEQQQLEEEKPRLL-REKKPYIIVVSQED 79 (184)
Q Consensus 44 ~~~~~~~~~~~~~le~~~~~LL-e~gkpvii~VsAe~ 79 (184)
.||.-...-.+..||..-...= ++|+||++.|.+--
T Consensus 33 aTGk~~pVa~~~~LEr~Y~~~r~~~g~pVll~veGhf 69 (120)
T 2z4i_A 33 ATGKRFXVANNAELERSYLAARGHSEKPVLLSVEGHF 69 (120)
T ss_dssp TTCCEEEBCCCHHHHHHHHHHHCSSCCCEEEEEEEEE
T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 9998885368848998887555799975999998886
No 19
>>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes; 1.90A {Thermus thermophilus} (A:)
Probab=33.94 E-value=17 Score=17.63 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 70789899987406462111030
Q 537021.9.peg.7 158 YPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 158 f~VSPqIagALKsIpGVl~VeEi 180 (184)
++-||+++|-|+.+.-.++|+|+
T Consensus 37 ~~~tp~~rGmi~kV~hlV~v~ev 59 (60)
T 1bxy_A 37 LEDTPAIRGNVEKVAHLVRVEVV 59 (60)
T ss_dssp EECCHHHHHHHHHTTTTEEEEEE
T ss_pred ECCCHHHHHHHHHHHHEEEEEEC
T ss_conf 57997898799840124699973
No 20
>>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} (A:)
Probab=33.36 E-value=36 Score=15.56 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 9974898547999668970789899987406462111
Q 537021.9.peg.7 141 IFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 141 vli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
.++.+.|..-+++..+...--.++...|+++|||++.
T Consensus 165 ~~itd~gn~iiD~~~~~i~~p~~~~~~l~~i~GVve~ 201 (224)
T 3kwm_A 165 QTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTN 201 (224)
T ss_dssp TCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE
T ss_pred CEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 4063899879980589879999999998579999714
No 21
>>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:)
Probab=29.52 E-value=42 Score=15.17 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=35.1
Q ss_pred HHHHHHHHHHH----HHCCCCCCCCEEEEEECCCCCEEEEEECC--CCC----CCHHHHHHHHHCCCHHEHH
Q ss_conf 78999996112----21037888713999974898547999668--970----7898999874064621110
Q 537021.9.peg.7 117 LREIHKYFENR----QTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYP----ISPEIAFDLEHITGITKVV 178 (184)
Q Consensus 117 L~sI~s~Le~~----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~----VSPqIagALKsIpGVl~Ve 178 (184)
-..|.+.|+.= -..+.---|-|.=+.+. ++.-.|.+.|+ .++ +--++..+|+.++||-+|+
T Consensus 8 ~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~-~~~V~v~l~l~~~~~~~~~~i~~~i~~~l~~l~gv~~V~ 78 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVE-PPRAYVRXTLTTPGCPLHDSLGEAVRQALSRLPGVEEVE 78 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE-TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEE
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999998168898999884445772157886-583572880799998678999999999998189975089
No 22
>>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:453-529)
Probab=28.84 E-value=43 Score=15.09 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=45.3
Q ss_pred EEEEEE-CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 099973-80157899999611221037888713999974898547999668-970789899987406462111030
Q 537021.9.peg.7 107 LRVYLQ-DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 107 LRIfVr-D~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184)
+++..+ -+..|..|.+.|... |=.=-++.+......+-..+.+. .=.+.+++..+|+.+++|.+|.-+
T Consensus 5 i~~~~~d~pGvla~I~~il~~~------~vNI~~~~~~~~~~~~~a~~~i~~d~~~~~~i~~~i~~l~~v~~v~~i 74 (77)
T 1ygy_A 5 LIIHYVDRPGALGKIGTLLGTA------GVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVV 74 (77)
T ss_dssp EEEEESCCTTHHHHHHHHHHHT------TCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHC------CCCEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf 9998278698689999998757------978603787226889768999996899999999998648796189999
No 23
>>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (W:)
Probab=28.12 E-value=30 Score=16.01 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHCCCHHEHHH
Q ss_conf 078989998740646211103
Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQ 179 (184)
Q Consensus 159 ~VSPqIagALKsIpGVl~VeE 179 (184)
+-||+++|.|+.+.--++|+|
T Consensus 35 ~dtP~irGmi~kVkhLV~VeE 55 (55)
T 2zjr_W 35 SDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CCSHHHHHHHHHTGGGBCCCC
T ss_pred CCCHHHHHHHHHHHHEEEEEC
T ss_conf 799789889985143169859
No 24
>>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:35-113)
Probab=23.71 E-value=33 Score=15.81 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCEE-E-EEECCCCCEEEEEEC-C-C-CCCCHHHHHHHHHCCCHHEHHH
Q ss_conf 973801578999996112210378887139-9-997489854799966-8-9-7078989998740646211103
Q 537021.9.peg.7 110 YLQDRSPLREIHKYFENRQTQNYDKQGKIG-L-IFLRSQGKIEIEITL-D-H-YPISPEIAFDLEHITGITKVVQ 179 (184)
Q Consensus 110 fVrD~~pL~sI~s~Le~~~~~~~~G~G~V~-L-vli~~~~~~EVEI~L-p-~-f~VSPqIagALKsIpGVl~VeE 179 (184)
.+.|..++..|.+..... .++-.+|. + .+.....++++++-- - . =.-=|.++.+++.+|||.+|-|
T Consensus 7 ~~~d~~~~~~i~~i~~~~----~~~~~~v~~ve~vekk~lG~~~~~lKi~~~~PqdVpklRe~i~~~~~V~~v~E 77 (79)
T 1qht_A 7 LLKDDSAIEDVKKVTAKR----HGTVVKVKRAEKVQKKFLGRPIEVWKLYFNHPQDVPAIRDRIRAHPAVVDIYE 77 (79)
T ss_dssp EESCGGGHHHHTTCEEEE----TTEEEECCEEEEEEEEETTEEEEEEEEECSCTTHHHHHHHHHHTSTTEEEEES
T ss_pred EECCCCCHHHHHHHHHHH----CCCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 817987778999998763----36745168864232203697169999998289999999999971676263571
No 25
>>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} (C:1-162)
Probab=23.35 E-value=54 Score=14.47 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHCCCCCEEEEEHHHHHHH------------------HHHHHHC--CCCEEEEEEECCCCCCCC--CCCEEEEECC
Q ss_conf 35553102787522105899999------------------8787524--998289998410016777--6426986504
Q 537021.9.peg.7 37 MKLQEAEEDPNFLSLQEQQQLEE------------------EKPRLLR--EKKPYIIVVSQEDKLSLQ--RDSIRLLWVE 94 (184)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~le~------------------~~~~LLe--~gkpvii~VsAe~rle~e--g~~LRi~~ve 94 (184)
+.+..+|.||+.-++.|.++-++ ..+.++. -|+++++.|.+...--.+ .++..+..++
T Consensus 81 l~~~i~D~Tg~~~~~~F~~~a~~l~G~sa~el~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~y~~~~r~~~~v~~i~ 160 (162)
T 1l1o_C 81 LSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVK 160 (162)
T ss_dssp EEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 99999808996999997788999859999999998851588999999985292799999998637598357999999937
Q ss_pred CH
Q ss_conf 15
Q 537021.9.peg.7 95 SL 96 (184)
Q Consensus 95 pL 96 (184)
|+
T Consensus 161 ~i 162 (162)
T 1l1o_C 161 PV 162 (162)
T ss_dssp EC
T ss_pred EC
T ss_conf 58
No 26
>>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, L-threonine metabolism, alternate conformation lyase; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A* (A:86-166)
Probab=22.18 E-value=44 Score=15.03 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=24.9
Q ss_pred CCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 67614898501344333235553102787522105
Q 537021.9.peg.7 19 DGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQE 53 (184)
Q Consensus 19 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (184)
-|-. +....+.||.++..-.+.+.++|.|..-||
T Consensus 48 ~Ga~-V~~~~~~~~~~~~~a~~~a~~~~~~~~~qf 81 (81)
T 2gn0_A 48 YSAE-VVLHGDNFNDTIAKVSEIVETEGRIFIPPY 81 (81)
T ss_dssp HSCE-EEECCSSHHHHHHHHHHHHHHHCCEECCSS
T ss_pred CCCE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 5412-432012200103789998750598555544
No 27
>>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} (A:)
Probab=21.79 E-value=58 Score=14.28 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=24.6
Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH
Q ss_conf 74898547999668970789899987406462111
Q 537021.9.peg.7 143 LRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184)
Q Consensus 143 i~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184)
+.++|..-+++.+| ..-..++...|+++|||++.
T Consensus 171 ~Td~gn~i~D~~~~-~~~~~~~~~~l~~i~Gvve~ 204 (226)
T 2pjm_A 171 ITDNGNMIIDVFMN-IDDAIELEKEINNIPGVVEN 204 (226)
T ss_dssp BCTTSCEEEEEECC-CSCHHHHHHHHHTSTTEEEE
T ss_pred EEECCCEEEEECCC-CCCHHHHHHHHHCCCCEEEE
T ss_conf 81199779970789-89999999999779989858
No 28
>>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:137-216,A:367-554)
Probab=21.42 E-value=54 Score=14.48 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHCCCHHEHHHH
Q ss_conf 970789899987406462111030
Q 537021.9.peg.7 157 HYPISPEIAFDLEHITGITKVVQV 180 (184)
Q Consensus 157 ~f~VSPqIagALKsIpGVl~VeEi 180 (184)
+|++|++-...||.||.+++-++|
T Consensus 244 GYr~~~erw~~ik~i~~a~~p~~i 267 (268)
T 1eex_A 244 GYRLQGERWEEIKNIPGALDPNEI 267 (268)
T ss_dssp SSCCCHHHHHHHHCCTTCBCCC--
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 755588799987453002680007
No 29
>>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:)
Probab=20.22 E-value=52 Score=14.57 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHH-----HCCCHHEHHHH
Q ss_conf 57899999611221037888713999974898547999668-9707898999874-----06462111030
Q 537021.9.peg.7 116 PLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLE-----HITGITKVVQV 180 (184)
Q Consensus 116 pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALK-----sIpGVl~VeEi 180 (184)
.|..++..|+.. -.|-|.|+-+.+ +.|.+.|- .+.--|.++.++. .+|.|..|+.+
T Consensus 12 ~L~~irp~l~~~------dGGdielv~v~~---~~V~V~l~GaC~gCpTl~~~Ie~~L~~~ipei~~V~~V 73 (74)
T 1th5_A 12 VLNEIRPYLAGT------GGGGLQFLMIKG---PIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp HHTTTHHHHTTT------TCCCCCCCEEET---TEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred HHHHHCHHHHHC------CCCEEEEEEECC---CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999856304026------897199999529---99999955887654059999999999879984089944
No 30
>>3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* ... (Z:)
Probab=20.20 E-value=48 Score=14.78 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHCCCHHEHHH
Q ss_conf 078989998740646211103
Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQ 179 (184)
Q Consensus 159 ~VSPqIagALKsIpGVl~VeE 179 (184)
+-||+++|-|+.+.--++|+|
T Consensus 39 ~dtp~~rGmi~kVkhLV~v~E 59 (59)
T 3i1n_Z 39 EDTPAIRGMINAVSFMVKVEE 59 (59)
T ss_dssp CCCHHHHHHHHHTGGGCEEEC
T ss_pred CCCHHHHHHHHHHHHEEEEEC
T ss_conf 799889889996344469849
Done!