Query 537021.9.peg.754_1 Match_columns 184 No_of_seqs 84 out of 86 Neff 3.6 Searched_HMMs 33803 Date Tue May 24 23:33:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_754.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2hpi_A DNA polymerase III alp 97.1 0.00027 8E-09 47.3 2.8 78 8-102 27-104 (105) 2 >3ebe_A Protein MCM10 homolog; 92.3 0.086 2.5E-06 31.8 2.4 72 11-98 67-141 (149) 3 >3f2b_A DNA-directed DNA polym 92.1 0.14 4.2E-06 30.4 3.4 75 11-99 28-104 (110) 4 >1xtz_A Ribose-5-phosphate iso 88.7 1.5 4.4E-05 24.1 6.1 64 113-177 14-82 (88) 5 >1m0s_A Ribose-5-phosphate iso 88.4 0.36 1.1E-05 27.9 2.8 59 114-177 13-71 (77) 6 >1o8b_A Ribose 5-phosphate iso 86.4 0.59 1.7E-05 26.6 2.9 59 114-177 10-68 (74) 7 >1uj6_A Ribose 5-phosphate iso 84.6 1.7 4.9E-05 23.9 4.5 59 114-177 12-74 (80) 8 >1sc6_A PGDH, D-3-phosphoglyce 83.2 3.7 0.00011 21.7 6.0 69 106-180 12-82 (83) 9 >3hhe_A Ribose-5-phosphate iso 82.3 1.4 4.2E-05 24.3 3.4 36 142-177 46-81 (87) 10 >2f8m_A Ribose 5-phosphate iso 78.5 4.3 0.00013 21.3 4.8 63 114-177 11-78 (84) 11 >3k5p_A D-3-phosphoglycerate d 72.0 7.9 0.00023 19.6 6.8 70 105-180 12-83 (84) 12 >2jhe_A Transcription regulato 69.5 2.4 7.1E-05 22.9 1.7 60 112-180 9-70 (73) 13 >2ko1_A CTR148A, GTP pyrophosp 60.7 13 0.00039 18.3 5.3 70 106-181 7-79 (88) 14 >2z51_A NIFU-like protein 2, c 57.4 15 0.00045 17.9 5.9 61 117-180 6-73 (73) 15 >1lk5_A D-ribose-5-phosphate i 53.0 11 0.00033 18.7 2.7 35 143-177 172-206 (229) 16 >1gm5_A RECG; helicase, replic 50.0 15 0.00045 17.9 3.0 57 40-97 32-88 (89) 17 >1uwd_A Hypothetical protein T 41.7 27 0.00079 16.4 4.4 61 118-178 9-79 (88) 18 >2z4i_A Copper homeostasis pro 37.4 31 0.00092 16.0 4.3 36 44-79 33-69 (120) 19 >1bxy_A Protein (ribosomal pro 33.9 17 0.00049 17.6 1.2 23 158-180 37-59 (60) 20 >3kwm_A Ribose-5-phosphate iso 33.4 36 0.0011 15.6 3.0 37 141-177 165-201 (224) 21 >3cq1_A Putative uncharacteriz 29.5 42 0.0012 15.2 2.6 61 117-178 8-78 (103) 22 >1ygy_A PGDH, D-3-phosphoglyce 28.8 43 0.0013 15.1 5.1 68 107-180 5-74 (77) 23 >2zjr_W 50S ribosomal protein 28.1 30 0.0009 16.0 1.7 21 159-179 35-55 (55) 24 >1qht_A Protein (DNA polymeras 23.7 33 0.00097 15.8 1.2 66 110-179 7-77 (79) 25 >1l1o_C Replication protein A 23.4 54 0.0016 14.5 4.0 60 37-96 81-162 (162) 26 >2gn0_A Threonine dehydratase 22.2 44 0.0013 15.0 1.6 34 19-53 48-81 (81) 27 >2pjm_A Ribose-5-phosphate iso 21.8 58 0.0017 14.3 3.4 34 143-177 171-204 (226) 28 >1eex_A Propanediol dehydratas 21.4 54 0.0016 14.5 1.9 24 157-180 244-267 (268) 29 >1th5_A NIFU1; iron-sulfur clu 20.2 52 0.0015 14.6 1.6 56 116-180 12-73 (74) 30 >3i1n_Z 50S ribosomal protein 20.2 48 0.0014 14.8 1.5 21 159-179 39-59 (59) No 1 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128) Probab=97.14 E-value=0.00027 Score=47.31 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.8 Q ss_pred CCCCCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC Q ss_conf 68871100286676148985013443332355531027875221058999998787524998289998410016777642 Q 537021.9.peg.7 8 KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDS 87 (184) Q Consensus 8 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~ 87 (184) .-.+.+.+++-+|+. ++| +...|.||++++..|.+..++-+ .+|++|.+++|....+ + .++.+ T Consensus 27 ~v~~~~~~~tk~G~~-~a~------------~~leD~tg~~e~~~F~~~~~~~~-~~l~~~~~v~i~g~v~-~--~~~~~ 89 (105) T 2hpi_A 27 MVEEVVRKPTRSGGM-MAR------------FTLSDETGALEVVVFGRAYEGVS-PKLKEDIPLLVLAEVE-K--GEELR 89 (105) T ss_dssp EECCC-------------C------------EEEEETTEEEEEC--------------CTTCEEEEEEEEC--------C T ss_pred EEEEEEECCCCCCCE-EEE------------EEEEECCCCEEEEECHHHHHHHH-HHHCCCCEEEEEEEEE-E--CCCEE T ss_conf 998999701789997-999------------99998998789998479999998-8851498799999999-7--89528 Q ss_pred EEEEECCCHHHHHHH Q ss_conf 698650415899973 Q 537021.9.peg.7 88 IRLLWVESLEKKSME 102 (184) Q Consensus 88 LRi~~vepLD~aAa~ 102 (184) +.+..+.||+++.++ T Consensus 90 l~v~~i~~l~~~~~~ 104 (105) T 2hpi_A 90 VLAQAVWTLEEVLEA 104 (105) T ss_dssp EEEEEEEEHHHHTTS T ss_pred EEEEECCCHHHHHCC T ss_conf 999663659999701 No 2 >>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A (A:1-149) Probab=92.27 E-value=0.086 Score=31.80 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=54.5 Q ss_pred CCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCC---CEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC Q ss_conf 711002866761489850134433323555310278---75221058999998787524998289998410016777642 Q 537021.9.peg.7 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDP---NFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDS 87 (184) Q Consensus 11 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~ 87 (184) +.+.+.+.+|+. |+| +...|.+| ++.++.|..++++-+ .+|+.+..++|....+ .+.++.+ T Consensus 67 ~~~~~~tk~g~~-~a~------------~~l~D~~g~~~~ie~~iF~~~~~~~~-~~l~~~~~~~i~g~v~--~~~~~~~ 130 (149) T 3ebe_A 67 KITPQSSNNGKT-FSI------------WRLNDLKDLDKYISLFLFGDVHKEHW-KTDQGTVIGLLNANPM--KPKEGTD 130 (149) T ss_dssp EECC-------C-CEE------------EEEECSSSTTCCEEEEECHHHHHHHT-TCCTTEEEEEESCEEC--CCCTTCC T ss_pred CCCCEECCCCCC-EEE------------EEEECCCCCCEEEEEEEECHHHHHHC-CCCCCEEEEEECCCCC--CCCCCCC T ss_conf 577127368984-799------------99760678860899999566878650-7588429999899017--7889987 Q ss_pred EEEEECCCHHH Q ss_conf 69865041589 Q 537021.9.peg.7 88 IRLLWVESLEK 98 (184) Q Consensus 88 LRi~~vepLD~ 98 (184) +...+|.++++ T Consensus 131 ~~~~~v~~~~~ 141 (149) T 3ebe_A 131 EVCLSVDNPQK 141 (149) T ss_dssp CEEEECSSGGG T ss_pred CEEEEECCCCC T ss_conf 25899768241 No 3 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:1-110) Probab=92.09 E-value=0.14 Score=30.42 Aligned_cols=75 Identities=8% Similarity=-0.031 Sum_probs=56.0 Q ss_pred CCHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHH--HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCE Q ss_conf 71100286676148985013443332355531027875221058--9999987875249982899984100167776426 Q 537021.9.peg.7 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQ--QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSI 88 (184) Q Consensus 11 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~L 88 (184) +.+-+.+-.|+. ++| +...|.||++.+..|. ..+++-+ ..|.+|..|+|.-.-+-.-...+.++ T Consensus 28 ~~~~~~tK~G~~-~~~------------~~l~D~tg~ie~~~F~~~~~~~~~~-~~l~~g~~v~v~G~v~~~~~~~~~~l 93 (110) T 3f2b_A 28 DAEVSELKSGRT-LLT------------MKITDYTNSILVKMFSRDKEDAELM-SGVKKGMWVKVRGSVQNDTFVRDLVI 93 (110) T ss_dssp EEEEEECTTSCE-EEE------------EEEECSSCEEEEEEECSSHHHHHHH-HTCCTTCEEEEEEEEEEETTTTEEEE T ss_pred EEEEEEECCCCE-EEE------------EEEEECCCCEEEEEECCCCCHHHHH-HHCCCCCEEEEEEEEECCCCCCCEEE T ss_conf 778787058988-999------------9998278868999955874328898-50679968999998851577774278 Q ss_pred EEEECCCHHHH Q ss_conf 98650415899 Q 537021.9.peg.7 89 RLLWVESLEKK 99 (184) Q Consensus 89 Ri~~vepLD~a 99 (184) .+..+.||+++ T Consensus 94 ~v~~i~~i~~~ 104 (110) T 3f2b_A 94 IANDLNEIAAN 104 (110) T ss_dssp EEEEEEEECCC T ss_pred EEEEEEECCCC T ss_conf 72123654775 No 4 >>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} (A:153-240) Probab=88.67 E-value=1.5 Score=24.13 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=43.2 Q ss_pred CCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 8015789999961122-----1037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 113 DRSPLREIHKYFENRQ-----TQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 113 D~~pL~sI~s~Le~~~-----~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .+-+...+.++|+... +.+..+.+.-.. ++-++|..-+++..+...--.++..+||++|||++. T Consensus 14 ~pf~~~~v~~~l~~~g~~~~lR~r~~~~~k~gp-~iTDnGN~I~D~~f~~i~dp~~l~~~L~~i~GVVe~ 82 (88) T 1xtz_A 14 VPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGP-VVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVET 82 (88) T ss_dssp CGGGHHHHHHHHHHTSCCSEEEECEETTTEEEE-CCCTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEE T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-EECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 343699999999986079860574157666785-071599769982689878999999987079989956 No 5 >>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} (A:126-202) Probab=88.45 E-value=0.36 Score=27.93 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=45.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 0157899999611221037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +-+...+.+.|+.. +|......-++.++|..-+++..+...=-.++...|+++|||++. T Consensus 13 P~a~~~v~~~l~~l-----G~~~~lR~p~iTDnGN~IlD~~f~~i~d~~~l~~~L~~i~GVVe~ 71 (77) T 1m0s_A 13 PMARSQVGRKLAAL-----GGSPEYREGVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTN 71 (77) T ss_dssp GGGHHHHHHHHHHT-----TCEEEECTTCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEE T ss_conf 67889999999982-----899523787372899979982389879999999997189989613 No 6 >>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} (A:128-201) Probab=86.36 E-value=0.59 Score=26.64 Aligned_cols=59 Identities=7% Similarity=0.082 Sum_probs=45.8 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 0157899999611221037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +-+...+.+.|+.. ++......-++.++|..-+++..+...--..+...|+++|||++. T Consensus 10 pf~~~~v~~~l~~~-----g~~~~lR~p~iTDnGN~IiD~~~~~i~d~~~l~~~L~~i~GVVE~ 68 (74) T 1o8b_A 10 PXARSAVARQLVKL-----GGRPEYRQGVVTDNGNVILDVHGXEILDPIAXENAINAIPGVVTV 68 (74) T ss_dssp GGGHHHHHHHHHHT-----TCEEEECTTCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHHHHHHHHH-----CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 76899999999983-----798435788575899879992289879999999997179989831 No 7 >>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210) Probab=84.62 E-value=1.7 Score=23.85 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=42.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 015789999961122103788871399----9974898547999668970789899987406462111 Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGL----IFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~L----vli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +-+...+..+|+.. +++..++. -++.++|..-+++..+.+.--.++...|+++|||++. T Consensus 12 p~~~~~v~~~l~~l-----G~~~~lR~~~~gp~vTDnGN~IiD~~~~~i~d~~~l~~~L~~i~GVVe~ 74 (80) T 1uj6_A 12 PFGYRATLKAIADL-----GGEPELRXDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVET 74 (80) T ss_dssp STTHHHHHHHHHTT-----TCCEEECEETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEE T ss_pred CCHHHHHHHHHHHH-----CCCEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 20269999999972-----8964894179802894799889991289989999999998679999802 No 8 >>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:322-404) Probab=83.25 E-value=3.7 Score=21.70 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=47.9 Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 10999738-0157899999611221037888713999974898547999668-970789899987406462111030 Q 537021.9.peg.7 106 SLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 106 gLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184) .|+++..| +..|..|.+.|... |=.=.++............+.+. ......++..+|+.++||.+|.-+ T Consensus 12 ~l~i~~~D~pGvla~Is~~l~~~------~iNI~~~~~~~~~~~~~a~i~i~vd~~~~~~i~~~l~~l~~V~~V~~l 82 (83) T 1sc6_A 12 RLXHIHENRPGVLTALNKIFAEQ------GVNIAAQYLQTSAQXGYVVIDIEADEDVAEKALQAXKAIPGTIRARLL 82 (83) T ss_dssp EEEEEEESCTTHHHHHHHHHHHT------TCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC T ss_pred EEEEEECCCCCHHHHHHHHHHHC------CCCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEE T ss_conf 89998358776689999999876------998799753677545699999844787549999999738988999860 No 9 >>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str} (A:148-234) Probab=82.32 E-value=1.4 Score=24.26 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=31.1 Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 974898547999668970789899987406462111 Q 537021.9.peg.7 142 FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 142 li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) ++.++|..-+++..+...--.++...||++|||++. T Consensus 46 ~iTDnGN~IiD~~f~~i~d~~~l~~~L~~i~GVVe~ 81 (87) T 3hhe_A 46 FKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEH 81 (87) T ss_dssp CCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEE T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 176899989967689979999999998379999604 No 10 >>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7} (A:140-223) Probab=78.46 E-value=4.3 Score=21.28 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=40.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEE----EEECCCCCEEEEEECCC-CCCCHHHHHHHHHCCCHHEH Q ss_conf 015789999961122103788871399----99748985479996689-70789899987406462111 Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGL----IFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177 (184) Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~L----vli~~~~~~EVEI~Lp~-f~VSPqIagALKsIpGVl~V 177 (184) +-+...+..+|+.... ..+++...+. -++.++|..-+++..++ ..=--++...|+++|||++. T Consensus 11 pf~~~~v~~~l~~l~~-~~G~~~~lR~~~~gp~iTDnGN~IiD~~f~~~i~dp~~l~~~L~~i~GVVe~ 78 (84) T 2f8m_A 11 TFGYEKIIENLLKIYT-LKGCTYKIRKRNGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDH 78 (84) T ss_dssp STTHHHHHHHHTTSTT-TTTCEEEECEETTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEE T ss_pred CCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 3127999999999860-5798636786499642846998899834897768999999997579999803 No 11 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:333-416) Probab=72.02 E-value=7.9 Score=19.65 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=49.8 Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 110999738-0157899999611221037888713999974898547999668-970789899987406462111030 Q 537021.9.peg.7 105 DSLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 105 kgLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184) ..|++.++| +..|..|.+.|..+ |=.=-++.....+......+.+. .-....++..+|+.++||.+|.-+ T Consensus 12 ~~l~i~~~d~pGvla~I~~~l~~~------~iNI~~~~~~~~~~~~~a~i~i~~d~~~~~~i~~~l~~l~~V~~v~~i 83 (84) T 3k5p_A 12 TRFMHVHENRPGILNSLMNVFSHH------HINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 83 (84) T ss_dssp EEEEEEECCCTTHHHHHHHHHHHT------TCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHHC------CCCHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEE T ss_conf 549985035125999999999876------998788640255746699998236776569999999718888999874 No 12 >>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} (A:1-73) Probab=69.52 E-value=2.4 Score=22.85 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=39.6 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 380157899999611221037888713999974898547999668--970789899987406462111030 Q 537021.9.peg.7 112 QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 112 rD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~VSPqIagALKsIpGVl~VeEi 180 (184) +-+.-+..|.+.+... .+.+.-+..+....+.+.+. ...--.++..+||.+|||.+|.-+ T Consensus 9 Dr~GlL~dI~~vis~~---------~~nI~~~~~~~~~~i~l~iev~~~~~L~~ii~~L~~i~gV~~V~Rv 70 (73) T 2jhe_A 9 DRLGLTRELLDLLVLR---------GIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV 70 (73) T ss_dssp SCTTHHHHHHHHHHHT---------TCCEEEEEEETTTEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEE T ss_pred CCCCHHHHHHHHHHHC---------CCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0154499999999866---------9549999972464199933444657899999999987506566533 No 13 >>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:) Probab=60.69 E-value=13 Score=18.26 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=49.0 Q ss_pred CEEEE-EECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCHHHHHHHHHCCCHHEHHHHH Q ss_conf 10999-7380157899999611221037888713999974898547999668--9707898999874064621110303 Q 537021.9.peg.7 106 SLRVY-LQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYPISPEIAFDLEHITGITKVVQVI 181 (184) Q Consensus 106 gLRIf-VrD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~VSPqIagALKsIpGVl~VeEi~ 181 (184) .|+|+ .+.+..|..|.+.|... |-.-.++.....++...+.+.+. ....-.++..+|+.++||.+|.-+. T Consensus 7 ~l~v~~~DrpGlL~~It~~la~~------~inI~~i~~~~~~~~~~~~~~v~v~d~~~l~~ii~~l~~i~~V~~V~r~~ 79 (88) T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKF------DTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLS 79 (88) T ss_dssp EEEEEEECCTTHHHHHHHHHTTS------SSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEC T ss_pred EEEEEEECCCCHHHHHHHHHHHC------CCEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 99999966878899999999987------98299999982699899999999999999999999997799987899986 No 14 >>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154) Probab=57.38 E-value=15 Score=17.91 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=39.6 Q ss_pred HHHHHHHHH-HHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHH-----HCCCHHEHHHH Q ss_conf 789999961-1221037888713999974898547999668-9707898999874-----06462111030 Q 537021.9.peg.7 117 LREIHKYFE-NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLE-----HITGITKVVQV 180 (184) Q Consensus 117 L~sI~s~Le-~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALK-----sIpGVl~VeEi 180 (184) ...|...|+ .+-....+|.|-|.|+-+.+ +.|-+.|. .+.=-|.++..+. .+|.|..|+.+ T Consensus 6 ~~~I~~~L~~iRP~L~~DggGdielv~v~~---~~V~v~l~GaC~gCpTl~~~Ie~~l~~~ip~i~~V~~V 73 (73) T 2z51_A 6 EENIEKVLEEIRPYLIGTADGSLDLVEIED---PIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 73 (73) T ss_dssp HHHHHHHHHHHGGGCCGGGCCEEEEEEEET---TEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEEEEC---CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC T ss_conf 245566543035887778885399999969---98999965886677539999999999869996189969 No 15 >>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} (A:) Probab=53.01 E-value=11 Score=18.74 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=28.2 Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 74898547999668970789899987406462111 Q 537021.9.peg.7 143 LRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 143 i~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +.++|..-+++..+...=..++...|+++|||++. T Consensus 172 itd~Gn~i~D~~~~~~~~~~~~~~~l~~i~Gvve~ 206 (229) T 1lk5_A 172 ITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIEN 206 (229) T ss_dssp CCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEE T ss_pred ECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 73699869967789979999999998789979975 No 16 >>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:160-248) Probab=50.03 E-value=15 Score=17.86 Aligned_cols=57 Identities=9% Similarity=-0.158 Sum_probs=39.0 Q ss_pred HHHCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCHH Q ss_conf 5310278752210589999987875249982899984100167776426986504158 Q 537021.9.peg.7 40 QEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLE 97 (184) Q Consensus 40 ~~~~~~~~~~~~~~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~LRi~~vepLD 97 (184) ...|.||...+.-|.+....-+ ..|.+|+.+++.-.-+-.-...+..+..-.++.+| T Consensus 32 ~l~D~tg~i~~v~F~~~~~~~~-~~l~~g~~~~v~Gkv~~~~~~g~~~i~~p~~~~~d 88 (89) T 1gm5_A 32 VLSDGLVHVPLKWFNQDYLQTY-LKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKE 88 (89) T ss_dssp EECCSSCCEEEEECSCCTTHHH-HHTTCSSCEEEEEEECSCCTTSSCCEEEEEEECSC T ss_pred EEEECCEEEEEEEECCHHHHHH-HHHCCCCEEEEEEEEEECCCCCEEEEECCEEECCC T ss_conf 9998986899999798799976-50359998999999987687886996298774356 No 17 >>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88) Probab=41.65 E-value=27 Score=16.38 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=37.8 Q ss_pred HHHHHHHHHH----HHCCCCCCCCEEEEEECCCCCEEEEEECC--CC----CCCHHHHHHHHHCCCHHEHH Q ss_conf 8999996112----21037888713999974898547999668--97----07898999874064621110 Q 537021.9.peg.7 118 REIHKYFENR----QTQNYDKQGKIGLIFLRSQGKIEIEITLD--HY----PISPEIAFDLEHITGITKVV 178 (184) Q Consensus 118 ~sI~s~Le~~----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f----~VSPqIagALKsIpGVl~Ve 178 (184) ..|.+.|+.= ...+.-.-|-|.=+.+.++|.-.|.+.|+ .+ .+.-+++.+|+.++||.+|+ T Consensus 9 ~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~dg~V~v~i~l~~~~~~~~~~l~~~i~~~l~~l~gv~~v~ 79 (88) T 1uwd_A 9 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVE 79 (88) T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEE T ss_pred HHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 99999985688999993714436044566514565368886378999628999999999997389975089 No 18 >>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A* (A:114-233) Probab=37.44 E-value=31 Score=15.97 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=28.1 Q ss_pred CCCCEEEEEHHHHHHHHHHHHH-CCCCEEEEEEECCC Q ss_conf 2787522105899999878752-49982899984100 Q 537021.9.peg.7 44 EDPNFLSLQEQQQLEEEKPRLL-REKKPYIIVVSQED 79 (184) Q Consensus 44 ~~~~~~~~~~~~~le~~~~~LL-e~gkpvii~VsAe~ 79 (184) .||.-...-.+..||..-...= ++|+||++.|.+-- T Consensus 33 aTGk~~pVa~~~~LEr~Y~~~r~~~g~pVll~veGhf 69 (120) T 2z4i_A 33 ATGKRFXVANNAELERSYLAARGHSEKPVLLSVEGHF 69 (120) T ss_dssp TTCCEEEBCCCHHHHHHHHHHHCSSCCCEEEEEEEEE T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEEEEEE T ss_conf 9998885368848998887555799975999998886 No 19 >>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes; 1.90A {Thermus thermophilus} (A:) Probab=33.94 E-value=17 Score=17.63 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3 Q ss_pred CCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 70789899987406462111030 Q 537021.9.peg.7 158 YPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 158 f~VSPqIagALKsIpGVl~VeEi 180 (184) ++-||+++|-|+.+.-.++|+|+ T Consensus 37 ~~~tp~~rGmi~kV~hlV~v~ev 59 (60) T 1bxy_A 37 LEDTPAIRGNVEKVAHLVRVEVV 59 (60) T ss_dssp EECCHHHHHHHHHTTTTEEEEEE T ss_pred ECCCHHHHHHHHHHHHEEEEEEC T ss_conf 57997898799840124699973 No 20 >>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} (A:) Probab=33.36 E-value=36 Score=15.56 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.6 Q ss_pred EEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 9974898547999668970789899987406462111 Q 537021.9.peg.7 141 IFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 141 vli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) .++.+.|..-+++..+...--.++...|+++|||++. T Consensus 165 ~~itd~gn~iiD~~~~~i~~p~~~~~~l~~i~GVve~ 201 (224) T 3kwm_A 165 QTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTN 201 (224) T ss_dssp TCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE T ss_pred CEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 4063899879980589879999999998579999714 No 21 >>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:) Probab=29.52 E-value=42 Score=15.17 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=35.1 Q ss_pred HHHHHHHHHHH----HHCCCCCCCCEEEEEECCCCCEEEEEECC--CCC----CCHHHHHHHHHCCCHHEHH Q ss_conf 78999996112----21037888713999974898547999668--970----7898999874064621110 Q 537021.9.peg.7 117 LREIHKYFENR----QTQNYDKQGKIGLIFLRSQGKIEIEITLD--HYP----ISPEIAFDLEHITGITKVV 178 (184) Q Consensus 117 L~sI~s~Le~~----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~----VSPqIagALKsIpGVl~Ve 178 (184) -..|.+.|+.= -..+.---|-|.=+.+. ++.-.|.+.|+ .++ +--++..+|+.++||-+|+ T Consensus 8 ~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~-~~~V~v~l~l~~~~~~~~~~i~~~i~~~l~~l~gv~~V~ 78 (103) T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVE-PPRAYVRXTLTTPGCPLHDSLGEAVRQALSRLPGVEEVE 78 (103) T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE-TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEE T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 99999998168898999884445772157886-583572880799998678999999999998189975089 No 22 >>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:453-529) Probab=28.84 E-value=43 Score=15.09 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=45.3 Q ss_pred EEEEEE-CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 099973-80157899999611221037888713999974898547999668-970789899987406462111030 Q 537021.9.peg.7 107 LRVYLQ-DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 107 LRIfVr-D~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeEi 180 (184) +++..+ -+..|..|.+.|... |=.=-++.+......+-..+.+. .=.+.+++..+|+.+++|.+|.-+ T Consensus 5 i~~~~~d~pGvla~I~~il~~~------~vNI~~~~~~~~~~~~~a~~~i~~d~~~~~~i~~~i~~l~~v~~v~~i 74 (77) T 1ygy_A 5 LIIHYVDRPGALGKIGTLLGTA------GVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVV 74 (77) T ss_dssp EEEEESCCTTHHHHHHHHHHHT------TCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEE T ss_pred EEEEECCCCCHHHHHHHHHHHC------CCCEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEE T ss_conf 9998278698689999998757------978603787226889768999996899999999998648796189999 No 23 >>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (W:) Probab=28.12 E-value=30 Score=16.01 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=18.6 Q ss_pred CCCHHHHHHHHHCCCHHEHHH Q ss_conf 078989998740646211103 Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 159 ~VSPqIagALKsIpGVl~VeE 179 (184) +-||+++|.|+.+.--++|+| T Consensus 35 ~dtP~irGmi~kVkhLV~VeE 55 (55) T 2zjr_W 35 SDTPAVRGMVKTVKHLLEVQE 55 (55) T ss_dssp CCSHHHHHHHHHTGGGBCCCC T ss_pred CCCHHHHHHHHHHHHEEEEEC T ss_conf 799789889985143169859 No 24 >>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:35-113) Probab=23.71 E-value=33 Score=15.81 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=30.7 Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCEE-E-EEECCCCCEEEEEEC-C-C-CCCCHHHHHHHHHCCCHHEHHH Q ss_conf 973801578999996112210378887139-9-997489854799966-8-9-7078989998740646211103 Q 537021.9.peg.7 110 YLQDRSPLREIHKYFENRQTQNYDKQGKIG-L-IFLRSQGKIEIEITL-D-H-YPISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 110 fVrD~~pL~sI~s~Le~~~~~~~~G~G~V~-L-vli~~~~~~EVEI~L-p-~-f~VSPqIagALKsIpGVl~VeE 179 (184) .+.|..++..|.+..... .++-.+|. + .+.....++++++-- - . =.-=|.++.+++.+|||.+|-| T Consensus 7 ~~~d~~~~~~i~~i~~~~----~~~~~~v~~ve~vekk~lG~~~~~lKi~~~~PqdVpklRe~i~~~~~V~~v~E 77 (79) T 1qht_A 7 LLKDDSAIEDVKKVTAKR----HGTVVKVKRAEKVQKKFLGRPIEVWKLYFNHPQDVPAIRDRIRAHPAVVDIYE 77 (79) T ss_dssp EESCGGGHHHHTTCEEEE----TTEEEECCEEEEEEEEETTEEEEEEEEECSCTTHHHHHHHHHHTSTTEEEEES T ss_pred EECCCCCHHHHHHHHHHH----CCCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCCEEC T ss_conf 817987778999998763----36745168864232203697169999998289999999999971676263571 No 25 >>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} (C:1-162) Probab=23.35 E-value=54 Score=14.47 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=34.7 Q ss_pred HHHHHHCCCCCEEEEEHHHHHHH------------------HHHHHHC--CCCEEEEEEECCCCCCCC--CCCEEEEECC Q ss_conf 35553102787522105899999------------------8787524--998289998410016777--6426986504 Q 537021.9.peg.7 37 MKLQEAEEDPNFLSLQEQQQLEE------------------EKPRLLR--EKKPYIIVVSQEDKLSLQ--RDSIRLLWVE 94 (184) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~le~------------------~~~~LLe--~gkpvii~VsAe~rle~e--g~~LRi~~ve 94 (184) +.+..+|.||+.-++.|.++-++ ..+.++. -|+++++.|.+...--.+ .++..+..++ T Consensus 81 l~~~i~D~Tg~~~~~~F~~~a~~l~G~sa~el~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~y~~~~r~~~~v~~i~ 160 (162) T 1l1o_C 81 LSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVK 160 (162) T ss_dssp EEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEEE T ss_pred EEEEEECCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEEE T ss_conf 99999808996999997788999859999999998851588999999985292799999998637598357999999937 Q ss_pred CH Q ss_conf 15 Q 537021.9.peg.7 95 SL 96 (184) Q Consensus 95 pL 96 (184) |+ T Consensus 161 ~i 162 (162) T 1l1o_C 161 PV 162 (162) T ss_dssp EC T ss_pred EC T ss_conf 58 No 26 >>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, L-threonine metabolism, alternate conformation lyase; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A* (A:86-166) Probab=22.18 E-value=44 Score=15.03 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=24.9 Q ss_pred CCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEH Q ss_conf 67614898501344333235553102787522105 Q 537021.9.peg.7 19 DGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQE 53 (184) Q Consensus 19 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (184) -|-. +....+.||.++..-.+.+.++|.|..-|| T Consensus 48 ~Ga~-V~~~~~~~~~~~~~a~~~a~~~~~~~~~qf 81 (81) T 2gn0_A 48 YSAE-VVLHGDNFNDTIAKVSEIVETEGRIFIPPY 81 (81) T ss_dssp HSCE-EEECCSSHHHHHHHHHHHHHHHCCEECCSS T ss_pred CCCE-EEEECCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 5412-432012200103789998750598555544 No 27 >>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} (A:) Probab=21.79 E-value=58 Score=14.28 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=24.6 Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 74898547999668970789899987406462111 Q 537021.9.peg.7 143 LRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 143 i~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +.++|..-+++.+| ..-..++...|+++|||++. T Consensus 171 ~Td~gn~i~D~~~~-~~~~~~~~~~l~~i~Gvve~ 204 (226) T 2pjm_A 171 ITDNGNMIIDVFMN-IDDAIELEKEINNIPGVVEN 204 (226) T ss_dssp BCTTSCEEEEEECC-CSCHHHHHHHHHTSTTEEEE T ss_pred EEECCCEEEEECCC-CCCHHHHHHHHHCCCCEEEE T ss_conf 81199779970789-89999999999779989858 No 28 >>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:137-216,A:367-554) Probab=21.42 E-value=54 Score=14.48 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.0 Q ss_pred CCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 970789899987406462111030 Q 537021.9.peg.7 157 HYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 157 ~f~VSPqIagALKsIpGVl~VeEi 180 (184) +|++|++-...||.||.+++-++| T Consensus 244 GYr~~~erw~~ik~i~~a~~p~~i 267 (268) T 1eex_A 244 GYRLQGERWEEIKNIPGALDPNEI 267 (268) T ss_dssp SSCCCHHHHHHHHCCTTCBCCC-- T ss_pred CCCCCHHHHHHHHCCCCCCCCCCC T ss_conf 755588799987453002680007 No 29 >>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:) Probab=20.22 E-value=52 Score=14.57 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=36.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHH-----HCCCHHEHHHH Q ss_conf 57899999611221037888713999974898547999668-9707898999874-----06462111030 Q 537021.9.peg.7 116 PLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLE-----HITGITKVVQV 180 (184) Q Consensus 116 pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALK-----sIpGVl~VeEi 180 (184) .|..++..|+.. -.|-|.|+-+.+ +.|.+.|- .+.--|.++.++. .+|.|..|+.+ T Consensus 12 ~L~~irp~l~~~------dGGdielv~v~~---~~V~V~l~GaC~gCpTl~~~Ie~~L~~~ipei~~V~~V 73 (74) T 1th5_A 12 VLNEIRPYLAGT------GGGGLQFLMIKG---PIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 73 (74) T ss_dssp HHTTTHHHHTTT------TCCCCCCCEEET---TEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEEC T ss_pred HHHHHCHHHHHC------CCCEEEEEEECC---CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 999856304026------897199999529---99999955887654059999999999879984089944 No 30 >>3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* ... (Z:) Probab=20.20 E-value=48 Score=14.78 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.1 Q ss_pred CCCHHHHHHHHHCCCHHEHHH Q ss_conf 078989998740646211103 Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 159 ~VSPqIagALKsIpGVl~VeE 179 (184) +-||+++|-|+.+.--++|+| T Consensus 39 ~dtp~~rGmi~kVkhLV~v~E 59 (59) T 3i1n_Z 39 EDTPAIRGMINAVSFMVKVEE 59 (59) T ss_dssp CCCHHHHHHHHHTGGGCEEEC T ss_pred CCCHHHHHHHHHHHHEEEEEC T ss_conf 799889889996344469849 Done!