Query 537021.9.peg.754_1 Match_columns 184 No_of_seqs 84 out of 86 Neff 3.6 Searched_HMMs 13730 Date Wed May 25 04:36:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_754.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lk5a2 d.58.40.1 (A:131-210) 89.0 0.43 3.2E-05 25.0 5.5 59 115-177 13-76 (80) 2 d1o8ba2 d.58.40.1 (A:127-198) 83.8 0.37 2.7E-05 25.5 2.9 59 114-177 11-69 (72) 3 d1uj4a2 d.58.40.1 (A:132-205) 80.1 1.3 9.4E-05 22.1 4.6 36 142-177 38-73 (74) 4 d1m0sa2 d.58.40.1 (A:127-198) 75.6 0.96 7E-05 22.9 2.8 56 115-177 13-70 (72) 5 d1sc6a3 d.58.18.1 (A:327-410) 75.4 2.7 0.00019 20.2 5.4 67 107-179 12-82 (84) 6 d1ygya3 d.58.18.1 (A:452-529) 66.6 4.2 0.0003 18.9 6.0 68 106-180 3-75 (78) 7 d2cu6a1 d.52.8.2 (A:6-96) Hypo 38.8 9.8 0.00071 16.6 2.6 48 130-178 20-73 (91) 8 d1y7pa2 d.58.18.12 (A:2-78) Hy 37.4 13 0.00092 16.0 5.8 67 105-178 2-74 (77) 9 d1l1oc_ b.40.4.3 (C:) Replicat 35.5 14 0.00099 15.8 3.8 60 38-99 79-162 (178) 10 d1uwda_ d.52.8.2 (A:) Hypothet 34.2 8.7 0.00063 17.0 1.7 47 132-178 26-78 (102) 11 d2zjrw1 d.59.1.1 (W:1-55) Prok 29.0 12 0.0009 16.0 1.8 22 158-179 34-55 (55) 12 d1xdpa3 d.136.1.4 (A:315-501) 28.4 18 0.0013 15.0 3.5 70 28-106 33-114 (187) 13 d1bxya_ d.59.1.1 (A:) Prokaryo 23.2 14 0.001 15.7 1.2 22 159-180 38-59 (60) 14 d2gycx1 d.59.1.1 (X:3-58) Prok 22.0 12 0.00087 16.1 0.6 21 159-179 36-56 (56) 15 d2f5tx2 d.136.1.5 (X:110-246) 20.0 15 0.0011 15.6 0.8 46 27-73 4-54 (137) No 1 >d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=88.99 E-value=0.43 Score=25.03 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=39.0 Q ss_pred CHHHHHHHHHHHH-----HHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 1578999996112-----21037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 115 SPLREIHKYFENR-----QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 115 ~pL~sI~s~Le~~-----~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) -+...+.+.|+.. -+.+.+++|+ ++.++|..-+++.++...-.-.+...|+++|||++. T Consensus 13 ~~~~~v~~~l~~~g~~~~lR~~~~~~gp----~iTDnGN~I~D~~~~~i~~p~~l~~~L~~ipGVVe~ 76 (80) T d1lk5a2 13 QAWKAIIEELSIFNAKAELRMGVNKDGP----VITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIEN 76 (80) T ss_dssp GGHHHHHHHGGGGTCEEEECBCSSSSSB----CCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCC----EEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 2899999999980998317204678887----682599979878889889999999999789998951 No 2 >d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Probab=83.83 E-value=0.37 Score=25.48 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=39.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 0157899999611221037888713999974898547999668970789899987406462111 Q 537021.9.peg.7 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 114 ~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) +-+...+..+|+.. +++....-.++.|+|..-+++..+...=.-.+...|+++|||++. T Consensus 11 p~~~~~v~~~l~~~-----g~~~~~R~~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 69 (72) T d1o8ba2 11 PMARSAVARQLVKL-----GGRPEYRQGVVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTV 69 (72) T ss_dssp GGGHHHHHHHHHHT-----TCEEEECTTCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHHHHHHHHC-----CCCCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEC T ss_conf 65899999999993-----897201763694699879988789979999999998679998705 No 3 >d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Probab=80.11 E-value=1.3 Score=22.08 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=28.9 Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 974898547999668970789899987406462111 Q 537021.9.peg.7 142 FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 142 li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) ++.++|..-+++..+...=-..+...|+++|||+++ T Consensus 38 ~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~ 73 (74) T d1uj4a2 38 YFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVET 73 (74) T ss_dssp CCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEE T ss_pred EEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECC T ss_conf 795199789988789959999999999769987634 No 4 >d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Probab=75.56 E-value=0.96 Score=22.90 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=36.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEE--EECCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHEH Q ss_conf 157899999611221037888713999--974898547999668970789899987406462111 Q 537021.9.peg.7 115 SPLREIHKYFENRQTQNYDKQGKIGLI--FLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177 (184) Q Consensus 115 ~pL~sI~s~Le~~~~~~~~G~G~V~Lv--li~~~~~~EVEI~Lp~f~VSPqIagALKsIpGVl~V 177 (184) -+...+...|+.- +| .+.+. ++.++|..-+++..+...=.-.+...|+.+|||+++ T Consensus 13 f~~~~v~~~l~~l-----g~--~~~lR~~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~IpGVVE~ 70 (72) T d1m0sa2 13 MARSQVGRKLAAL-----GG--SPEYREGVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTN 70 (72) T ss_dssp GGHHHHHHHHHHT-----TC--EEEECTTCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEE T ss_pred HHHHHHHHHHHHH-----CC--CCCCCCCCEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECC T ss_conf 2899999999993-----89--8622598382099889978889869999999999879988724 No 5 >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Probab=75.39 E-value=2.7 Score=20.15 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=42.0 Q ss_pred EEEEE---ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHEHHH Q ss_conf 09997---380157899999611221037888713999974898547999668-97078989998740646211103 Q 537021.9.peg.7 107 LRVYL---QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 107 LRIfV---rD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~~EVEI~Lp-~f~VSPqIagALKsIpGVl~VeE 179 (184) -|+++ +-+..|..|.+.|... |-.=..+.+-..+..+..-+.+. .-.++.++..+|+.+|||++|.- T Consensus 12 ~rl~i~~~d~PGvla~I~~~l~~~------~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~ 82 (84) T d1sc6a3 12 RRLMHIHENRPGVLTALNKIFAEQ------GVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARL 82 (84) T ss_dssp EEEEEEEESCTTHHHHHHHHHHHT------TCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEE T ss_pred EEEEEEECCCCCHHHHHHHHHHHC------CCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEE T ss_conf 389999679699899999999973------99989962445787748999997888777999999977998799997 No 6 >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=66.65 E-value=4.2 Score=18.94 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=41.7 Q ss_pred CEEEEE---ECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC--EEEEEECCCCCCCHHHHHHHHHCCCHHEHHHH Q ss_conf 109997---3801578999996112210378887139999748985--47999668970789899987406462111030 Q 537021.9.peg.7 106 SLRVYL---QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK--IEIEITLDHYPISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 106 gLRIfV---rD~~pL~sI~s~Le~~~~~~~~G~G~V~Lvli~~~~~--~EVEI~Lp~f~VSPqIagALKsIpGVl~VeEi 180 (184) |-++++ +-|..|..|.+.|... |=.-..+.+...... .-+-+.+++ ++++++..+|+.+|||.+|.-+ T Consensus 3 G~~L~i~~~D~PGvi~~I~~~l~~~------~iNI~~m~~~~~~~g~~a~~vi~vD~-~~~~~vl~~I~~~~~V~~v~~i 75 (78) T d1ygya3 3 GINLIIHYVDRPGALGKIGTLLGTA------GVNIQAAQLSEDAEGPGATILLRLDQ-DVPDDVRTAIAAAVDAYKLEVV 75 (78) T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHT------TCCEEEEEEEECSSSSCEEEEEEESS-CCCHHHHHHHHHHHTEEEEEEE T ss_pred CEEEEEEECCCCCHHHHHHHHHHHC------CCCHHHHEEEECCCCCEEEEEEECCC-CCCHHHHHHHHCCCCEEEEEEE T ss_conf 1699999679699799999999864------96932413300578976899999377-7669999999727790799999 No 7 >d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Probab=38.77 E-value=9.8 Score=16.65 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=31.1 Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECC--CC----CCCHHHHHHHHHCCCHHEHH Q ss_conf 037888713999974898547999668--97----07898999874064621110 Q 537021.9.peg.7 130 QNYDKQGKIGLIFLRSQGKIEIEITLD--HY----PISPEIAFDLEHITGITKVV 178 (184) Q Consensus 130 ~~~~G~G~V~Lvli~~~~~~EVEI~Lp--~f----~VSPqIagALKsIpGVl~Ve 178 (184) .+.--=|-|.=+-+. ++.-.|.+.|+ .+ .+.-+++.||++++||-+|. T Consensus 20 ~dIv~LGlV~~i~i~-~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~ 73 (91) T d2cu6a1 20 LDVVNLGLIYDLVVE-PPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVE 73 (91) T ss_dssp EETTTTTCEEEEEEE-TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEE T ss_pred CCHHHCCCEEEEEEE-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 684214550378994-264189997488897479999999999998089973289 No 8 >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=37.42 E-value=13 Score=15.97 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=38.8 Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCCEEEE-EECCCCCE----EEEEECCCCCCCHHHHHHHHHCCCHHEHH Q ss_conf 110999738-0157899999611221037888713999-97489854----79996689707898999874064621110 Q 537021.9.peg.7 105 DSLRVYLQD-RSPLREIHKYFENRQTQNYDKQGKIGLI-FLRSQGKI----EIEITLDHYPISPEIAFDLEHITGITKVV 178 (184) Q Consensus 105 kgLRIfVrD-~~pL~sI~s~Le~~~~~~~~G~G~V~Lv-li~~~~~~----EVEI~Lp~f~VSPqIagALKsIpGVl~Ve 178 (184) .+++|...| +..|..|.+.+... |-.-.++- -...+|.. .++++...-. -..+...|+.+|||.+|+ T Consensus 2 ~~i~i~~~Dr~GlL~di~~~ia~~------~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~-l~~ll~kL~~l~~V~~Ve 74 (77) T d1y7pa2 2 RGLRIIAENKIGVLRDLTTIIAEE------GGNITFAQTFLIKHGEHEGKALIYFEIEGGD-FEKILERVKTFDYIIEIE 74 (77) T ss_dssp EEEEEEEECCTTHHHHHHHHCC----------CEEEEEEEECCSSTTTTEEEEEEEECSSC-HHHHHHHHHTCTTEEEEE T ss_pred EEEEEEEECCCCHHHHHHHHHHHC------CCCEEEEEEECCCCCEEEEEEEEEEECCCCC-HHHHHHHHHCCCCEEEEE T ss_conf 359999955777699999999876------9996888853167881799999999758644-999999987699926888 No 9 >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=35.46 E-value=14 Score=15.77 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=30.0 Q ss_pred HHHHHCCCCCEEEEEHHHHHHH----------------------HHHHHHCCCCEEEEEEECCC-CCCC-CCCCEEEEEC Q ss_conf 5553102787522105899999----------------------87875249982899984100-1677-7642698650 Q 537021.9.peg.7 38 KLQEAEEDPNFLSLQEQQQLEE----------------------EKPRLLREKKPYIIVVSQED-KLSL-QRDSIRLLWV 93 (184) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~le~----------------------~~~~LLe~gkpvii~VsAe~-rle~-eg~~LRi~~v 93 (184) .+..+|.||+.-++.|..+.++ .-..++ |+.+++.+.+.. .-.+ ..++.++..+ T Consensus 79 ~~~i~D~Tg~~~~~~F~~~a~~l~G~sA~EL~~~~~~d~~~~~~~~~~l~--~k~~~f~~~~k~~~yn~e~r~k~~v~~i 156 (178) T d1l1oc_ 79 SVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNAN--FRSFIFRVRVKVETYNDESRIKATVMDV 156 (178) T ss_dssp EEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTT--TCEEEEEEEEECCCC-----CEEEEEEE T ss_pred EEEEECCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHC--CCEEEEEEEEEECCCCCEEEEEEEEEEE T ss_conf 99996388879999966567998699999999876349899999999854--9589999999763659816799999994 Q ss_pred CCHHHH Q ss_conf 415899 Q 537021.9.peg.7 94 ESLEKK 99 (184) Q Consensus 94 epLD~a 99 (184) +|+|-. T Consensus 157 ~pvd~~ 162 (178) T d1l1oc_ 157 KPVDYR 162 (178) T ss_dssp EECCHH T ss_pred EECCHH T ss_conf 738999 No 10 >d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Probab=34.18 E-value=8.7 Score=16.96 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=30.2 Q ss_pred CCCCCCEEEEEECCCCCEEEEEECC--CCCC----CHHHHHHHHHCCCHHEHH Q ss_conf 7888713999974898547999668--9707----898999874064621110 Q 537021.9.peg.7 132 YDKQGKIGLIFLRSQGKIEIEITLD--HYPI----SPEIAFDLEHITGITKVV 178 (184) Q Consensus 132 ~~G~G~V~Lvli~~~~~~EVEI~Lp--~f~V----SPqIagALKsIpGVl~Ve 178 (184) .--=|-|+=+-+.+++.-.|++.|+ .++. .-+++.|+++++||.+|. T Consensus 26 IV~LGlV~~i~I~~~g~V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~ 78 (102) T d1uwda_ 26 VVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVE 78 (102) T ss_dssp TTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEE T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 14436235677514664278886488999627999999999998289976089 No 11 >d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]} Probab=28.96 E-value=12 Score=16.03 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=19.3 Q ss_pred CCCCHHHHHHHHHCCCHHEHHH Q ss_conf 7078989998740646211103 Q 537021.9.peg.7 158 YPISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 158 f~VSPqIagALKsIpGVl~VeE 179 (184) .+-||+++|.|+.+.--++|+| T Consensus 34 ~~dtp~irGmi~kV~hLV~VeE 55 (55) T d2zjrw1 34 VSDTPAVRGMVKTVKHLLEVQE 55 (55) T ss_dssp CCCSHHHHHHHHHTGGGBCCCC T ss_pred ECCCHHHHHHHHHHHHEEEEEC T ss_conf 4799789889985043179859 No 12 >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Probab=28.36 E-value=18 Score=15.04 Aligned_cols=70 Identities=19% Similarity=0.400 Sum_probs=50.5 Q ss_pred EHHHHHHHHHHHHHHCCCCCEEEEE------------HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCC Q ss_conf 0134433323555310278752210------------5899999878752499828999841001677764269865041 Q 537021.9.peg.7 28 EDCYDHAIEMKLQEAEEDPNFLSLQ------------EQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVES 95 (184) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~le~~~~~LLe~gkpvii~VsAe~rle~eg~~LRi~~vep 95 (184) -+.+|+-++ -|+++-.||+-+++. .++-+.+.++ ||.|.+.|.-.+|-|.+. + +.|.+- T Consensus 33 Y~sF~~vv~-fl~eAA~DP~V~~Ik~TlYR~a~~S~Ii~aLi~Aa~n-----GK~Vtv~vELkARFDEe~-N--I~wa~~ 103 (187) T d1xdpa3 33 YHTFEHVLE-LLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN-----GKKVTVVVELQARFDEEA-N--IHWAKR 103 (187) T ss_dssp TBCTHHHHH-HHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHT-----TCEEEEEECTTCSSTTTT-T--TTTTHH T ss_pred HHHHHHHHH-HHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHC-----CCEEEEEEECHHCCCHHH-H--HHHHHH T ss_conf 312168999-9999846998418878899716986379999999976-----998999982200004888-8--999999 Q ss_pred HHHHHHHHCCC Q ss_conf 58999732011 Q 537021.9.peg.7 96 LEKKSMEMLDS 106 (184) Q Consensus 96 LD~aAa~~~kg 106 (184) |+++-+++.-| T Consensus 104 Le~aGv~ViyG 114 (187) T d1xdpa3 104 LTEAGVHVIFS 114 (187) T ss_dssp HHHHTCEEEEC T ss_pred HHHCCCEEECC T ss_conf 99779999737 No 13 >d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} Probab=23.21 E-value=14 Score=15.75 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6 Q ss_pred CCCHHHHHHHHHCCCHHEHHHH Q ss_conf 0789899987406462111030 Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQV 180 (184) Q Consensus 159 ~VSPqIagALKsIpGVl~VeEi 180 (184) +-||+++|-|+.+.--++|+|+ T Consensus 38 ~~tp~i~Gmi~kVkhLV~Veev 59 (60) T d1bxya_ 38 EDTPAIRGNVEKVAHLVRVEVV 59 (60) T ss_dssp ECCHHHHHHHHHTTTTEEEEEE T ss_pred CCCHHHHHHHHHHHHEEEEEEC T ss_conf 7998898899841124699974 No 14 >d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]} Probab=21.99 E-value=12 Score=16.12 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.5 Q ss_pred CCCHHHHHHHHHCCCHHEHHH Q ss_conf 078989998740646211103 Q 537021.9.peg.7 159 PISPEIAFDLEHITGITKVVQ 179 (184) Q Consensus 159 ~VSPqIagALKsIpGVl~VeE 179 (184) +-||+++|.|+.+.--++|+| T Consensus 36 ~dtp~irGmi~kVkhLV~veE 56 (56) T d2gycx1 36 EDTPAIRGMINAVSFMVKVEE 56 (56) T ss_dssp CCCTTHHHHHHHTTTTEECCC T ss_pred CCCHHHHHHHHHHHHEEEEEC T ss_conf 799889889996354269749 No 15 >d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]} Probab=20.02 E-value=15 Score=15.56 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=29.6 Q ss_pred EEHHHHHHHHHHHHHHCCCCCEEEEEHH-----HHHHHHHHHHHCCCCEEEE Q ss_conf 5013443332355531027875221058-----9999987875249982899 Q 537021.9.peg.7 27 LEDCYDHAIEMKLQEAEEDPNFLSLQEQ-----QQLEEEKPRLLREKKPYII 73 (184) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~le~~~~~LLe~gkpvii 73 (184) -+..+|.|||| .+++++.--++++.+. ...-++--..|+-|-.+-+ T Consensus 4 Rs~~~dEAIEM-~rEsLe~~e~EvIvvtP~eFF~~Ire~L~~~L~rGvTlSl 54 (137) T d2f5tx2 4 RSRSFDEAIEM-FRESLYSAKNEVIVVTPSEFFETIREDLIKTLERGVTVSL 54 (137) T ss_dssp EESCHHHHHHH-HHHHHHTCSSEEEEEECGGGHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCHHHHHHH-HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 10118899999-9999984166089973199999999999999864857999 Done!