BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.754_1
(184 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 1226
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 124/181 (68%), Positives = 150/181 (82%)
Query: 4 IFFPKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPR 63
IFFP N+ KK + N DFL LEDCYDH+IE KLQEAEEDPNFLS+QEQ++LE++KP
Sbjct: 1045 IFFPNYNSSNRKKTSNKNRDFLTLEDCYDHSIERKLQEAEEDPNFLSVQEQRKLEKKKPY 1104
Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKY 123
LLREK PYII VSQED +S++RDS+RLL V+SL+ KSMEML SL++YLQD SPL EIHKY
Sbjct: 1105 LLREKNPYIIFVSQEDMVSVKRDSVRLLLVQSLKNKSMEMLVSLKIYLQDHSPLTEIHKY 1164
Query: 124 FENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183
F+NRQ Q++DK GKI L+F+R Q +IE+EITLD YPIS EI+FDLEHI GI KVV +I +
Sbjct: 1165 FQNRQVQHHDKHGKIDLVFVRLQEEIELEITLDQYPISLEISFDLEHIAGIMKVVPIIRD 1224
Query: 184 E 184
E
Sbjct: 1225 E 1225
>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
Length = 1172
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN +Q ++ + ++ + L + + LL +
Sbjct: 1025 KQERKTRTGNK-------------MGIVQFSDATGQYEAVLFSEALAQYR-DLLEPGRSV 1070
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I+VS ED+ + ++R+ V+SLE ++ M +LR+YL+D P+ I R
Sbjct: 1071 VIMVSAEDR--PEGINLRIQTVQSLEAEASCMQKALRIYLRDPQPIAAISSQLTTR---- 1124
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+G++ LI ++ G+ EIEI L Y ISP++A + ++G+ V
Sbjct: 1125 --GEGQVSLIVIKDGGRGEIEIGLPERYRISPQVAAAMRAVSGVVDVE 1170
>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
Length = 1178
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1031 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1076
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1077 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1128
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1129 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1176
>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
Length = 1188
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1041 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1086
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1087 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1138
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1139 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1186
>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
Length = 1190
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1043 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1088
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1089 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1140
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1141 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1188
>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
Rev.1]
gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
Ether]
gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
Ether]
gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
Ether]
gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
Rev.1]
gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
2308]
gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
86/8/59]
gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
86/8/59]
gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
str. 9-941]
gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
nucleic acid binding domain:DNA polymerase III alpha sub
[Brucella melitensis biovar Abortus 2308]
gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
86/8/59]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
Length = 1163
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
Length = 1163
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
Length = 1163
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
Length = 1163
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M +LR+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKALRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVDVE 1161
>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
63/9]
gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
63/9]
Length = 1163
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F + + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAALFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
Length = 1185
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 30/183 (16%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN L ++ +F ++ + L + + +L
Sbjct: 1020 SRMERRTKTGNK-------------MGILGLSDPTGHFEAVLFSEGLAQYR-EVLEPGGA 1065
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENR--- 127
++ + E L + R+L E L+ + + LR++L+D PL I K +
Sbjct: 1066 VLLQLGAE--LQGEDVRARILHAEPLDDAAAKTQKGLRIFLRDTKPLESIAKRLQMPEAG 1123
Query: 128 ---------QTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
+ + G++ L+ + + E+E+ L + +SP+IA ++ + G+ V
Sbjct: 1124 GGGSATPASEPKRPGGDGEVTLVMML-DLETEVEMKLPGRFRVSPQIAGAIKAVQGVVDV 1182
Query: 178 VQV 180
V
Sbjct: 1183 QTV 1185
>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
Length = 1149
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ ++ GN + ++ F ++ + L + + LL K
Sbjct: 996 SRQERRTKTGNK-------------MGIVGLSDPSGQFEAVLFSETLAQFR-ELLEPGKA 1041
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ VS E + + R+ E L++ + +M +R++L+ PL + +
Sbjct: 1042 LLLQVSAE--MQGEDVRARIQTAEPLDEAASKMQKGMRIFLRSPDPLDSVASRLGSL--A 1097
Query: 131 NYDKQGKIGLIFLR-SQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ L+ L G E+E+ L Y +SP+IA L+ + G+ +V
Sbjct: 1098 GGRGDGEVALVLLLGESGATEVELKLPGRYSLSPQIAGALKAVPGVVQVE 1147
>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
Length = 1190
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + + + LL K
Sbjct: 1043 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGFAQYR-DLLESGKSV 1088
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1089 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1140
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1141 TRGDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEVE 1188
>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
Length = 1163
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGFAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMQKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQHEVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
Length = 1163
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN +Q ++ F ++ + L + + LL K
Sbjct: 1016 RQERKTRTGNK-------------MGIVQLSDASGQFEAVLFSEGLAQYR-DLLESGKSV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ V+SLE ++ M ++R+YL+ +R I +F N
Sbjct: 1062 VITVQAENR--PEGIGLRIQTVQSLEDEACRMRKAMRLYLRSADAVRHIAPHF------N 1113
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ LI ++ G+ E+EI L Y +SP+IA ++ I G+ +V
Sbjct: 1114 TRGDGQVSLIVIKDNGQREVEIELPHRYRVSPQIASAMKAIQGVVEVE 1161
>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
Length = 1144
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K GN + ++ +F ++ + L + LL P
Sbjct: 995 SRQERKTKTGNR-------------MGIVGLSDPSGHFEAVLFSEGLAHYR-DLLEPGTP 1040
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++V+ E L + +R+ E L++ + +LR+++ PL I +
Sbjct: 1041 VLMMVAAE--LQGEDVRVRIQSCERLDEATARHHKNLRIFVNSTEPLTGISRRL-----S 1093
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
G++ L+ L GK E+EI L YP+SP+IA ++ I G+ V
Sbjct: 1094 GGKGDGEVSLVLLMDGGKAEVEIRLDGRYPVSPQIAGAIKAIPGVVAVE 1142
>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
Length = 1146
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K GN ++ ++ F +L ++L + + + L +
Sbjct: 998 SRQERKTKSGNR-------------MGIVRLSDASGQFEALLFSEKLNQFRDQ-LEPGRS 1043
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I+VS + + S+R+ V+ +E + + SLRV+L+D PL+ + +
Sbjct: 1044 VVILVSADMR--DDEPSLRVEQVDPIEAVATRVQKSLRVFLRDERPLKSLARQL------ 1095
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ ++ L G+ E+E+ L Y +SPEIA L+ + G+T V
Sbjct: 1096 GGRGDGEVNVVVLLDGGRREVEVKLPGRYRLSPEIAGALKAVPGVTDVQ 1144
>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
Length = 1173
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+++ +F ++ + L + + +L +P ++ + L + R+ E L++ +
Sbjct: 1042 LSDQTGHFEAIIFSEGLNQYR-DILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAA 1098
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159
+R++L+D L + + +G++ LI + G+ E+E+ L D Y
Sbjct: 1099 ARHQKGMRIFLRDDRALSSVQQRLT------LRGEGEVSLILILDGGEREVEVRLKDRYQ 1152
Query: 160 ISPEIAFDLEHITGITKVV 178
+P++A L + G+ +V
Sbjct: 1153 ATPQVAGALRAVPGVVQVE 1171
>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
Length = 1173
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+++ +F ++ + L + + +L +P ++ + L + R+ E L++ +
Sbjct: 1042 LSDQTGHFEAIIFSEGLNQYR-DILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAA 1098
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159
+R++L+D L + + +G++ LI + G+ E+E+ L D Y
Sbjct: 1099 ARHQKGMRIFLRDDRALSSVQQRLT------LRGEGEVSLILILDGGEREVEVRLKDRYQ 1152
Query: 160 ISPEIAFDLEHITGITKVV 178
+P++A L + G+ +V
Sbjct: 1153 ATPQVAGALRAVPGVVQVE 1171
>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
CM4]
gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
CM4]
Length = 1173
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+++ +F ++ + L + + +L +P ++ + L + R+ E L++ +
Sbjct: 1042 LSDQTGHFEAIIFSEGLNQYR-DILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAA 1098
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159
+R++L+D L + + +G++ LI + G+ E+E+ L D Y
Sbjct: 1099 ARHQKGMRIFLRDDRALSSVQQRLT------LRGEGEVSLILILDGGEREVEVRLKDRYQ 1152
Query: 160 ISPEIAFDLEHITGITKVV 178
+P++A L + G+ +V
Sbjct: 1153 ATPQVAGALRAVPGVVQVE 1171
>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
Length = 1173
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+++ +F ++ + L + + +L +P ++ + L + R+ E L++ +
Sbjct: 1042 LSDQTGHFEAIIFSEGLNQYR-DILEPGRPLVLTIQAN--LEGEDVRARITTAEPLDQAA 1098
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHYP 159
+R++L+D L + + +G++ LI + G+ E+E+ L D Y
Sbjct: 1099 ARHQKGMRIFLRDDRALSSVQQRLT------LRGEGEVSLILILDGGEREVEVRLKDRYQ 1152
Query: 160 ISPEIAFDLEHITGITKVV 178
+P++A L + G+ +V
Sbjct: 1153 ATPQVAGALRAVPGVVQVE 1171
>gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
Length = 1167
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 998 SRMERRTKTGNK-------------MGIMGLSDPTGHFEAVLFSEGLAQYR-DVLEPGAA 1043
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQ-- 128
++ + E L + R+L E L+ + + LR++L+D L I K +
Sbjct: 1044 VLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQKGLRIFLRDTKALESIAKRLAGPEMA 1101
Query: 129 --------------TQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITG 173
+ G++ L+ + + E+E+ L + +SP+IA ++ + G
Sbjct: 1102 SSNGAAPKVGSPGIAPRSNGDGEVLLVMML-DLETEVEMKLPGRFKVSPQIAGAIKAVAG 1160
Query: 174 ITKVVQV 180
+ V Q+
Sbjct: 1161 VVDVQQL 1167
>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
2060]
Length = 1158
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + +++ +F ++ + L++ + LL +P
Sbjct: 1010 DRSERRTKTGNK-------------IGIVNLSDQTGHFEAIVFSEGLQQYR-ELLEPGRP 1055
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+ + + R+ E L++ +R+YL+D P+ + + R
Sbjct: 1056 LALQLQASA--EGEDVRARIQTCEPLDQAVARHQKGMRIYLRDERPIASVQQRLTMR--- 1110
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+G++ LI + G+ E+EI L D Y +P+IA L + G+ +V
Sbjct: 1111 ---GEGEVSLILILDGGEREVEIRLKDRYQATPQIAGALRAVPGVVQVE 1156
>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 1153
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K G +Q ++ + + + L + + L
Sbjct: 1005 SRQERKTRSG-------------GKLGIIQLSDPSGQYEVVLFSEALYAFRDQ-LEPGSS 1050
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
I+ VS E++ + S R+ V+SLE +++ M +LRV+++D +PL+
Sbjct: 1051 VIVGVSAEER--PEGVSFRVQSVQSLEDEAVRMQKALRVFMRDANPLQAFRSQL------ 1102
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
D +I L+ +R G+ E+EITL Y +SP++A ++ G+ V
Sbjct: 1103 RADGDSEISLVLVRDGGEREVEITLPGRYRVSPQMASVVKAAPGVLDVE 1151
>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
Length = 1189
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ + ++ + + LL K
Sbjct: 1041 SKQERKTKTGNK-------------MGIVAFSDSSGQYEAVLFSETWALHR-DLLEPGKS 1086
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I V E++ + +R+ ESLE ++ +LRV+++D P+ + + + R
Sbjct: 1087 IVITVLAEER--PEGVGLRIQTAESLEDRAARGQTALRVFVRDAKPINSVSTHLKAR--- 1141
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+G++ I ++ G EIE+TL D Y ISP++A L+ G+ V
Sbjct: 1142 ---GEGQVSFIMIKDGGCREIEVTLADRYKISPQMAAALKAAPGVLDVE 1187
>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
WSM2075]
gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
WSM2075]
Length = 1175
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 11 NRKGKKKPDGNH-DFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+++ +K GN + D + ++ + L + + LL +
Sbjct: 1027 SKQERKTRTGNKMGVVAFSDT--------------SGQYEAVLFSEGLAQYR-DLLEAGR 1071
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT 129
+I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ P I R
Sbjct: 1072 SVVITVAAEDR--PEGVNLRINSVQSLEDEASRIQKALRIFVRNDGPASMIQSQLTQR-- 1127
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+ ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V
Sbjct: 1128 ----GESQVSIIVIKDEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEVE 1173
>gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
Length = 1165
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 30/183 (16%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN +F ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNKMGIFG-------------LSDATGHFEAVLFSEGLAQFR-DVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENR--- 127
++ + E L + R+L E L+ + + LR++L+D PL I K ++
Sbjct: 1046 VLMQLGAE--LQGEDVRARILQAEPLDDAAAKTQKGLRIFLRDTKPLDSIEKRLKSPDAA 1103
Query: 128 ---------QTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
+ G + L+ + + E+E+ L + +SP+IA ++ ++G+ V
Sbjct: 1104 AIPAAPAAGRRSGGAGDGDVTLVMML-DLETEVEMKLPGRFRVSPQIAGAIKAVSGVVDV 1162
Query: 178 VQV 180
V
Sbjct: 1163 QTV 1165
>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
Length = 1168
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1004 SRMERRTKTGNK-------------MGIIGLSDPSGHFEAVLFSEGLAQFR-EVLEPGAA 1049
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT- 129
++ + E L + R+ E L+ + + LR++L+D PL I K +
Sbjct: 1050 VLLQLDAE--LQGEEVRARVSRAEPLDDAAAKTQKGLRIFLRDSRPLESIEKRLQANDNG 1107
Query: 130 ----------QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+G++ L+ + + E+EI L + +SP+IA ++ +TG+ V
Sbjct: 1108 DPAGAAKVPASRQAGEGEVSLVMML-DLETEVEIKLPGRFRVSPQIAGAIKAVTGVVDVQ 1166
Query: 179 QV 180
+
Sbjct: 1167 AI 1168
>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
Length = 1154
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 79/167 (47%), Gaps = 23/167 (13%)
Query: 13 KGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYI 72
+ +K GN ++ ++ + +L +++LE+ + L+ + +
Sbjct: 1008 QERKTKTGNR-------------MGIVRLSDATGQYEALLFREKLEQFR-DALQAGRSVV 1053
Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
++V + + S+R+ V+ +++ + + S+RV+++D P+ + K + R
Sbjct: 1054 VLVGADMR--DDEPSLRIEQVDPIDQMAARLQKSMRVFVRDERPIPSLAKQLQVR----- 1106
Query: 133 DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+G + +I L G E+E+ L + +SPEIA L+ + G+T V
Sbjct: 1107 -GEGDVTVIVLLENGAREVEVKLPGRFRLSPEIAGALKAVPGVTDVQ 1152
>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
Length = 1169
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + LL K
Sbjct: 1021 SKQERKTRTGNK-------------MGIVAFSDASGQFEAVLFSEMLNQYR-DLLEPGKS 1066
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I +
Sbjct: 1067 LVMTVDAEER--PEGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHL------ 1118
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V
Sbjct: 1119 NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDVE 1167
>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
1021]
gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
Length = 1169
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + LL K
Sbjct: 1021 SKQERKTRTGNK-------------MGIVAFSDASGQFEAVLFSEMLNQYR-DLLEPGKS 1066
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I +
Sbjct: 1067 LVMTVDAEER--PEGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHL------ 1118
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V
Sbjct: 1119 NAKGDGLVSFIVIKDNGQREIEVELNEKYRISPEIAAALRSAPGVVDVE 1167
>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
Length = 1168
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + +++ +F ++ + L++ + LL +
Sbjct: 1020 DRSERRTKTGNK-------------LGIVNLSDQTGHFEAIVFSEGLQQYR-ELLEPGRA 1065
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+ + + R+ E L++ +R+YL+D P+ + + R
Sbjct: 1066 LALQLQASA--EGEDVRARIQTCEPLDQAVARYQKGMRIYLRDERPIPSVQQRLTTR--- 1120
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+G++ LI + G+ E+E+ L D Y SP+IA L + G+ +V
Sbjct: 1121 ---GEGEVSLILILDGGEREVEVKLRDRYQASPQIAGALRAVPGVVQVE 1166
>gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14]
gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
Length = 1168
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1004 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLAQFR-EVLEPGAA 1049
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L R+L E L+ + + LR++L+D PL I + + +
Sbjct: 1050 VLMQLGAE--LQGDEVRARVLHAEPLDDAAAKTQRGLRIFLRDTRPLDSIVRRLQTPEND 1107
Query: 131 -----------NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G + L+ L + E+EI L + +SP++A ++ ++G+ V
Sbjct: 1108 GPAGAAKVPASRQSGDGDVSLVMLL-DLETEVEIKLPGRFRVSPQVAGAIKAVSGVVDVQ 1166
Query: 179 QV 180
+
Sbjct: 1167 AI 1168
>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
Length = 1159
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K GN ++ ++ F L +++LE+ + L +
Sbjct: 1011 SRQERKTKTGNR-------------MGIVRLSDSTGQFEGLLFKEKLEQFR-DALEPGRS 1056
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++V + + + SIR+ V+ ++K + + S+ V+L+D P+ + ++ + R
Sbjct: 1057 VVLLVGADMR--DDKPSIRIEQVDPIDKVAANLQKSMMVFLRDERPVESLVRHLKVR--- 1111
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+G + +I +G+ E+E+ L Y +SPEIA L+ + G+ V
Sbjct: 1112 ---GEGNVTVIVQLDRGQREVEVKLPGRYRLSPEIAGALKAVPGVMDVQ 1157
>gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
Length = 1173
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 75/187 (40%), Gaps = 34/187 (18%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1004 SRMERRTKTGNK-------------MGIMGLSDPTGHFEAVLFSEGLAQYR-DVLEPGAA 1049
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D PL I K + +
Sbjct: 1050 VLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKRLQGPEAA 1107
Query: 131 N----------------YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITG 173
+G++ L+ + + E+E+ L + +SP+IA ++ +TG
Sbjct: 1108 ANGAGGPAKSAAPPLAPRAGEGEVSLVMML-DLETEVEMKLPGRFKVSPQIAGAIKAVTG 1166
Query: 174 ITKVVQV 180
+ V Q+
Sbjct: 1167 VVDVQQL 1173
>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
Length = 1175
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 11 NRKGKKKPDGNH-DFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+++ +K GN + D + ++ + L + + LL +
Sbjct: 1027 SKQERKTRTGNKMGVVAFSDT--------------SGQYEAVLFSEALAQYR-DLLEAGR 1071
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT 129
+I V+ ED+ + ++R+ V+SLE+++ + +LR+++++ P I R
Sbjct: 1072 SVVITVAAEDR--PEGVNLRINSVQSLEEEASRIQKALRIFVRNEGPASIIQSQLTQR-- 1127
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+ ++ +I ++ + + E+EI L Y +SP+IA + + G+ +V
Sbjct: 1128 ----GESQVSIIVIKEEAQGEVEIALQGGYRVSPQIASAMRAVPGVVEVE 1173
>gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
Length = 1170
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F +Q ++ + LE+ + L
Sbjct: 1013 SGRQERKSARGNR-FAF------------VQLSDTTGQYEVTMFSDTLEKTR-EFLEVGA 1058
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
II V E + + + V ++ LR++++D + + E +
Sbjct: 1059 KVIITV--EATMEADQLKLLARGVSPIDAAVARAGPVGLRIFIEDEEAIAPVASLLERSK 1116
Query: 129 TQNY-DKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
++ +G I L L E+E++L +P++P + ++ I+G++ + ++
Sbjct: 1117 KESSMGGRGPIHLCLLHPDLPGEVEMSLGAEFPVTPVVKGAIKAISGVSTIEEI 1170
>gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
Length = 1167
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 71/181 (39%), Gaps = 28/181 (15%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1004 SRTERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLAQFR-DVLEPGAA 1049
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT- 129
++ + E L + R+ E L+ + + LR++L+D PL I + + +
Sbjct: 1050 VLLQLDAE--LQGEDVRARVSRAEPLDDAAAKTQKGLRIFLRDSKPLESIERRLQANENG 1107
Query: 130 ---------QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
G + ++ L + E+EI L + +SP+IA ++ ++G+ V
Sbjct: 1108 DPAGGAGVAARQAGDGDVSVVMLL-DLETEVEIKLPGRFRVSPQIAGAIKAVSGVVDVQA 1166
Query: 180 V 180
+
Sbjct: 1167 I 1167
>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
Length = 1179
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + LL K
Sbjct: 1031 SKQERKTRTGNK-------------MGIVTFSDATGQFEAVLFSEGLNQYR-DLLESGKS 1076
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I V+ E++ + +R+ +SLE+KS++M +LRVYL+D SPLR + +
Sbjct: 1077 LVITVAAEER--PEGIGLRIQTAQSLEEKSLQMQKTLRVYLRDSSPLRALAAHL------ 1128
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
N G + + ++ G+ EIE+ L+ + I+PEIA + G+ V
Sbjct: 1129 NTKGDGLVSFVVIKEDGRREIEVELNQRFRITPEIAAAMRSAPGVVDVE 1177
>gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278]
gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278]
Length = 1174
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 76/189 (40%), Gaps = 36/189 (19%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1003 SRMERRTKTGNK-------------MGIMGLSDPTGHFEAVLFSEGLAQYR-DVLEPGAA 1048
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFE----- 125
++ + E L + R+L E L+ + + LR++L+D PL I K +
Sbjct: 1049 VLLQLGAE--LQGEDVRARVLHAEPLDDAAAKTQRGLRIFLRDTKPLDSIVKRLQGDGAA 1106
Query: 126 -------------NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHI 171
+ +G++ L+ + + E+E+ L + +SP+IA ++ +
Sbjct: 1107 ANGNGAVAKGPATAPPPRAAAGEGEVSLVMML-DLETEVEMKLPGRFKVSPQIAGAIKAV 1165
Query: 172 TGITKVVQV 180
TG+ +V Q+
Sbjct: 1166 TGVVEVQQL 1174
>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
Length = 1165
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + LL K
Sbjct: 1017 SKQERKTRTGNK-------------MGIVAFSDASGQFEAVLFSEMLNQYR-DLLEAGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I +
Sbjct: 1063 LVMTVDAEER--PEGIGLRIRTLRSLEEESLQMQKALRVYVRDSGPLRSIASHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDVE 1163
>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
sp. JE062]
gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
sp. JE062]
Length = 1144
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN ++ ++ + ++ + L + + LL
Sbjct: 997 KQERKTRTGNQ-------------MGIVRISDPTGQYEAVMFSETLNQCR-DLLEPGASV 1042
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+++V + + + S+R+ VE LEK + + +LR++L P+ + +
Sbjct: 1043 VLLVQADMR--DEEVSVRISQVEPLEKVAGRVHRTLRIFLGSDEPIASLQRQL------R 1094
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
G++ + L G+ E+E+ L +Y +SP+++ L+ + G+ V
Sbjct: 1095 RGGDGEVSCVVLLDDGQREVEVKLPGNYQLSPQLSGALKTLPGVMDVQ 1142
>gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
antarcticus 307]
gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
antarcticus 307]
Length = 1172
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 42/183 (22%)
Query: 12 RKGKKK-------------PDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLE 58
R+ +K P G ++ D + A ++ E N + +Q + +E
Sbjct: 1018 RQERKSARGNRFAFVQLSDPTGQYEVTMFSDTLEAA-----RDHLETGNQIVIQVEATME 1072
Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118
E+ +LL + ++ LRV+L D + +
Sbjct: 1073 AEQLKLL--GRSVMLADMAVANAGSSG---------------------LRVFLGDPAAIS 1109
Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
+ + N + + EI++ L+ +PI+P+I L + G+ +V
Sbjct: 1110 TVSDILQGAIRDNVKGGRGPVMFTIDDIELGEIDVELETQFPINPQIKGALRSLGGVIEV 1169
Query: 178 VQV 180
++
Sbjct: 1170 QEI 1172
>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
Length = 1150
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
++ ++ ++ + L + LL P +++V+ E L+ + +R+ E L+ +
Sbjct: 1014 LSDPSGHYEAVIFSEGLAHYR-DLLEPGTPLLMMVAAE--LNGEDVRVRINSCEKLDPVT 1070
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYP 159
LR++L+ P+ I + + +T + G++ LI + + E+E++L YP
Sbjct: 1071 ARHQKGLRIFLRSPEPIEGIARRLADGKTVDA-GSGEVSLILMVEDARAEVEVSLPGKYP 1129
Query: 160 ISPEIAFDLEHITGITKVV 178
ISP+IA ++ I G+ +
Sbjct: 1130 ISPQIAGAIKAIPGVVAIE 1148
>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
Length = 1151
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K G +Q ++ + + + L + ++
Sbjct: 1003 SRQERKTRSG-------------GKIGIIQMSDASAQYEVVLFSESLYAFR-DVMEPGAS 1048
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
I+ E++ + S R V+SLE +++ M +LR++L+D +P+ + +
Sbjct: 1049 VIVTAQAEER--PEGVSFRASNVQSLEDEAVRMQKALRIFLRDENPIDAFQSHLQP---- 1102
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
+ ++ ++ LR G E+EI L D Y +SP+IA ++ G+ V
Sbjct: 1103 --NGDSEVSIVLLRDDGGREVEIMLADKYRVSPQIASAIKAAHGVVDVE 1149
>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
Length = 1165
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DMLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + +
Sbjct: 1063 FLLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
N G + I ++ +GK E+E+ L Y I+PEIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDVE 1163
>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
Length = 1165
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + LL K
Sbjct: 1017 SKQERKTRTGNK-------------MGIVAFSDASGQFEAVLFSEMLNQYR-DLLEAGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E++ + +R+ + SLE++S++M +LRVY++D PLR I +
Sbjct: 1063 LVMTVDAEER--PEGIGLRIRTLRSLEEESLQMQKALRVYVRDCGPLRSIASHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ G+ EIE+ L + Y ISPEIA L G+ V
Sbjct: 1115 NARGDGLVSFIVIKDNGQREIEVELSEKYRISPEIAAALRSAPGVVDVE 1163
>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
Length = 1166
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN + ++ + ++ + L + + LL K
Sbjct: 1019 KQERKTRTGNK-------------MGIVTFSDASGQYEAVLFSEGLAQFR-DLLEVGKSL 1064
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ N
Sbjct: 1065 VITVQAEER--PEGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHL------N 1116
Query: 132 YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
G + I ++ +G EIE+ L + Y ISPEIA L G+ V
Sbjct: 1117 TKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDVE 1164
>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
Length = 1165
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DMLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + +
Sbjct: 1063 FLLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
N G + I ++ +GK E+E+ L Y I+PEIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKEEGKREVEVALPEKYRITPEIAAALRAAPGVVDVE 1163
>gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
Length = 1161
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 1006 RQERKSARGNR-FAF------------AQLSDTTGGYEVTLFSDTLELAR-EHLEVGSKI 1051
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFE-NRQT 129
+I V E + + + V ++ + LRV++ ++ + + RQ
Sbjct: 1052 VITV--EATMESDQLKLLGRSVAPIDAAVADAGSMGLRVFIDGPGAIQAVADVLDGARQA 1109
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G + + E+E+ L +P++P+I + + G+ +V ++
Sbjct: 1110 VKAAGKGPVQFCLMDPSLPGEVEVDLGREFPVTPQIKGAIRSLDGVMEVEEI 1161
>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
Length = 1151
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLAQYR-EVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D PL + K + +++
Sbjct: 1046 VLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLESLTKRLQPPESR 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ L+ + E+E + + +SP+IA ++ ++G+ V +
Sbjct: 1104 AAGGN--VALVLRL-DPQTEVEFEIPGRFQVSPQIAGAIKAVSGVEHVETL 1151
>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
Length = 1157
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + LL
Sbjct: 1000 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLGQFR-ELLEPGLA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ +S E L + R+ VE L++ + + +L+++L+D PL I + E+
Sbjct: 1046 VLLQLSAE--LQGEDVRARIANVELLDQAAAKTSMALKIFLRDDKPLESIRRRLEDHARG 1103
Query: 131 NYDKQ----GKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
G++ L+ + + E+E+ L D Y +SP+IA L+ ITG+ V +
Sbjct: 1104 GGAGSSARAGEVTLVMML-DLETEVEMRLRDRYKVSPQIAGALKAITGVVDVQTL 1157
>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
Length = 1167
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN + ++ + ++ + L + + LL K
Sbjct: 1020 KQERKTRTGNK-------------MGIVTFSDASGQYEAVLFSEGLAQFR-DLLEVGKSL 1065
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+I V E++ + +R+ +SLE+KS++M +LRVY++D PL+ + ++ N
Sbjct: 1066 VINVQAEER--PEGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHL------N 1117
Query: 132 YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
G + I ++ +G EIE+ L + Y ISPEIA L G+ V
Sbjct: 1118 TKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDVE 1165
>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
3841]
gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
bv. viciae 3841]
Length = 1165
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DVLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + +
Sbjct: 1063 FVLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ GK E+E+ L + Y I+PEIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDVE 1163
>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1165
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DVLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PLR + +
Sbjct: 1063 FVLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYVRDSGPLRMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ GK E+E+ L + Y I+PEIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKEDGKREVEVALSEKYRITPEIAAALRAAPGVVDVE 1163
>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
Length = 1151
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNK-------------MGIMGLSDPTGHFEAVLFSEGLAQYR-EVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D PL I K + +T+
Sbjct: 1046 VLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSISKRLQPPETK 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
I L+ + E+E + + +SP+IA ++ + G+ V +
Sbjct: 1104 VAGGN--IALVLRL-DPQTEVEFEIPGRFQVSPQIAGAIKAVIGVEHVETL 1151
>gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative
[Rhodobacterales bacterium HTCC2083]
gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative
[Rhodobacteraceae bacterium HTCC2083]
Length = 1168
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + L++ + L
Sbjct: 1013 RQERKSARGNR-FAF------------AQLSDTSGAYEVTLFSDTLDKCR-EFLETGAKV 1058
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E + + + V ++ + SLR+++++ + I Q
Sbjct: 1059 VVTV--EANMESDQLKLLGRSVAPIDVVVADAGQTSLRIFVENSGAVENIASVLTRAQET 1116
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G + L L S E+E+ L +P++P+I L+ + G+ +V +V
Sbjct: 1117 VKQGARGPVLLCLLDSGLPGEVEVDLGREFPVNPQIKGALKSLDGVMQVEEV 1168
>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
alexandrii DFL-11]
gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
alexandrii DFL-11]
Length = 1138
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 72/140 (51%), Gaps = 10/140 (7%)
Query: 40 QEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKK 99
+ ++ + +L +++LE+ + +L+ + +++V + + S+ + V+ ++K
Sbjct: 1006 RLSDATGQYEALLFREKLEQFR-DVLQTGRSVVVLVGADMR--DDEPSLIIEQVDPIDKV 1062
Query: 100 SMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HY 158
+ + S+RV+++D P+ + K R +G + +I L G E+E+ L +
Sbjct: 1063 AARLQKSMRVFVRDDRPIASLAKQLTVR------GEGDVTVIVLLENGAREVEVKLPGRF 1116
Query: 159 PISPEIAFDLEHITGITKVV 178
+SPEIA L+ + G+T V
Sbjct: 1117 RLSPEIAGALKAVPGVTDVQ 1136
>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
Length = 1151
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNK-------------MGIMGLSDPTGHFEAVLFSEGLAQYR-DVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D PL I K + +++
Sbjct: 1046 VLLQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKPLDSITKRLQPPESK 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
I L+ E+E L + +SP+IA ++ +TG+ V +
Sbjct: 1104 VSGGN--IALVLRL-DPHTEVEFELPGRFQVSPQIAGAIKAVTGVELVETL 1151
>gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
Length = 1167
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F +Q ++ F + LE+ + L
Sbjct: 1010 SGRQERKSARGNR-FAF------------VQLSDTTGGFEVTLFSETLEKSRDH-LETGA 1055
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
+I V E + + + V ++ + LR++++ + + + +N
Sbjct: 1056 QVVITV--EATMESDQLKLLGRAVSPIDGVVADAGAMGLRIFVETQEAIPSVASVLQNAV 1113
Query: 129 TQ-NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
T +G I + EIEI YP++P+I ++ ++G+ V ++
Sbjct: 1114 TSVKSGGRGPIRFCLMGPSLPGEIEIDTGQDYPVTPQIKGAIKSLSGVLAVEEM 1167
>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
Length = 1162
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ + ++ + L + +L K +II VS E++ + S+RL +SLEK++
Sbjct: 1032 SDTSGQYEAVLFSEAL-SDYEEILELGKSFIITVSAENR--SEGVSLRLETAQSLEKEAA 1088
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPI 160
+ +R++++ L +I + N G++ LI ++ G E+EITL Y +
Sbjct: 1089 QHHKMMRLFIKTVDMLPQIQQNL------NPSGNGEVALILIQEDGLREVEITLPKRYKV 1142
Query: 161 SPEIAFDLEHITGITKVV 178
+ +A L+ I G+ V
Sbjct: 1143 NSRVASALKSIQGVVDVE 1160
>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1165
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DVLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + +
Sbjct: 1063 FVLTATGEER--PEGIGLRVQTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V
Sbjct: 1115 NARGDGLVSFIVIKEEGKREVEVALAEKYRITPEIAAALRAAPGVVDVE 1163
>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
K84]
gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
K84]
Length = 1187
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN +F+ ++ F ++ + L + + +L K
Sbjct: 1039 SKQERKTRTGNKMGIFV-------------FSDASGQFEAVLFSEVLNQYR-DVLEVGKS 1084
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ +++ + S+RL +SLE+KS++M +LRVY++D PL+ + +
Sbjct: 1085 FVVTAQADER--PEGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHL------ 1136
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVV 178
N G + I ++ +GK E+E+ L + Y I+PEIA L G+ V
Sbjct: 1137 NAKGDGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDVE 1185
>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
Length = 1162
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ + ++ + L + +L K +II VS E++ + S+RL +SLE ++
Sbjct: 1032 SDTSGQYETILFSEMLAAYE-DMLEPGKSFIITVSAENR--SEGVSLRLETAQSLENEAA 1088
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPI 160
+ +R++++ L +I + N + G++GLI ++ G E+EITL Y +
Sbjct: 1089 QHHKMMRLFIKTVDMLPQIEQNL------NPNGNGEVGLILIQEDGLREVEITLPKRYKV 1142
Query: 161 SPEIAFDLEHITGITKVV 178
+ ++ I G+ V
Sbjct: 1143 DSSVVSAMKSIHGVVDVE 1160
>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
Length = 1164
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ + ++ + L + +L K +II VS E++ + S+R+ ++SLE++S+
Sbjct: 1034 SDTSGQYEAVLFSEAL-SDYEEMLEPGKSFIITVSAENR--SEGVSLRIETIQSLEQESL 1090
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPI 160
+ +R++++ L +I + N G++GLI ++ G E+EI L Y +
Sbjct: 1091 KQHKMMRLFIKTVDMLPQIEQNL------NLGGNGEVGLILIQEDGLREVEIALPKRYKV 1144
Query: 161 SPEIAFDLEHITGITKVV 178
+ +A ++ I G+ V
Sbjct: 1145 NSHVANAMKLIQGVVDVE 1162
>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
Length = 1155
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ + ++ + L + +L K +II VS E++ + S+R+ ++SLE +++
Sbjct: 1025 SDTSGQYEAILFSEAL-SDYEEMLEPGKSFIITVSAENR--SEGASLRIETIQSLENEAL 1081
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPI 160
+ +R++++ L +I + N G++GLI ++ G E+EI L Y +
Sbjct: 1082 QQHKMMRLFIKTVDMLPQIEQNL------NLGGNGEVGLILIQEDGLREVEIALPKRYKV 1135
Query: 161 SPEIAFDLEHITGITKVV 178
+ +A ++ I G+ V
Sbjct: 1136 NSHVANAMKLIQGVVDVE 1153
>gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
Length = 1170
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + L
Sbjct: 1015 RQERKSARGNR-FAF------------AQLSDTTGGYEVTIFSDVLEKAR-EYLDTGSKV 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFE-NRQT 129
+I E + + + + ++ + S LR+YL D + + + E ++
Sbjct: 1061 VIT--AEATMESDQLKLLMRSAGPVDAAVADAGRSSLRIYLDDAAAISTVATVLEDAKKA 1118
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G+I L S ++E+ L +PI+P+I L+ + G+ +V ++
Sbjct: 1119 ARSASPGEIYLYLQDSDLPGDVEMNLGAMFPINPQIKGALKSLEGVMEVEEI 1170
>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
Length = 1150
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q +++ + ++ Q+ L + + LL + ++ +S + + R+ VE L
Sbjct: 1017 VQLSDDSGQYEAILFQEGLTQYR-DLLEKGATVMVTLSA--SVEGEDVRARITAVEPLAA 1073
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
+ LR++L+D +PL +I R +G++ L+ +G E+EI L
Sbjct: 1074 AVAKTQKGLRIFLRDAAPLDKIKSRLSAR------GEGEVSLVVSLERGASEVEIKLPGG 1127
Query: 158 YPISPEIAFDLEHITGITKVVQV 180
Y +SP++A L+ I G+T V V
Sbjct: 1128 YTVSPDMAGALQTIPGVTAVEHV 1150
>gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative
[Rhodobacterales bacterium Y4I]
gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative
[Rhodobacterales bacterium Y4I]
Length = 1148
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ F + LE+ + L
Sbjct: 993 RQERKSARGNR-FAF------------AQLSDPSGAFEVTLFSEVLEKSR-EYLETGAKV 1038
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFENRQTQ 130
+I E + + + + V ++ + S LRVYL D S + + + E+ +
Sbjct: 1039 VIT--AEATMESDQLKLLVRSVGPVDSAIADAGRSSLRVYLSDASAVGTVAQVLEDAKAA 1096
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G++ + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1097 ARNASRGEVYMYLQDPGLPGDVEMDLGQAFPINPQIKGALKSLDGVMDVEEI 1148
>gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114]
gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114]
Length = 1183
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 1028 RQERKSARGNR-FAF------------AQMSDPTGAYEVTLFSDTLEAAR-DYLEAGSKV 1073
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML-DSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E + + + V ++ + ++ L+V++ + + E
Sbjct: 1074 VVTV--EATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPEAVAAVATVLEGAGRA 1131
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
QG + L + + E+E+ L + ++P+I ++ ++G+ +V ++
Sbjct: 1132 VKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSGVLEVEEI 1183
>gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1]
Length = 1177
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 18/171 (10%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN F F+ ++ + LE + L
Sbjct: 1023 KQERKSQRGNR-FAFVS------------LSDPTGLYEITIFSDTLEASR-EFLETGSNV 1068
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
II E L ++ + V+ ++ + LRV+++D S + + E
Sbjct: 1069 II--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLLERTAGDA 1126
Query: 132 YD-KQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G I L + E+E+ L +P+SP+I L + G+ V +V
Sbjct: 1127 AKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1177
>gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
Length = 1155
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 18/171 (10%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN F F+ ++ + LE + L
Sbjct: 1001 KQERKSQRGNR-FAFVS------------LSDPTGLYEITIFSDTLEASR-EFLETGSNV 1046
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
II E L ++ + V+ ++ + LRV+++D S + + E
Sbjct: 1047 II--QAEATLEAEQLKLLGRSVQPVDGAIASEANGLRVFIEDESGVASVESLLERTAGDA 1104
Query: 132 YD-KQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G I L + E+E+ L +P+SP+I L + G+ V +V
Sbjct: 1105 AKSSKGPIHLCLMAPDLPGEVEVILGDSFPVSPQIKGALRSLEGVVMVEEV 1155
>gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
Length = 1188
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 19/173 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F +Q ++ + LE + L
Sbjct: 1031 SGRQERKSARGNR-FAF------------VQLSDPTGQYEVTMFSDTLEVART-YLETGS 1076
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
++ E + + + V ++ + LRV++ S + I +
Sbjct: 1077 QIVL--QCEATMEGDQLKLLGRSVSPIDSVVADAGSAGLRVFIDSPSAIDTIASILASAA 1134
Query: 129 TQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQ 179
+G + + + E+E+ L +P++P+I L + G+ +V
Sbjct: 1135 RDGVRAARGPVYICLTNADLPGEVELDLGEPFPVNPQIKGALRSLGGVIEVED 1187
>gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
Length = 1166
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ +F LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDTTGSFEVTIFSDTLEKCR-EFLETGAQV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFE-NRQT 129
+I E + + + V+ ++ LR+++ + + + Q+
Sbjct: 1057 VIT--AEATMEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAIGSVAAVLQGASQS 1114
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ G I + + E+EI YP++P+I ++ +TG+ V ++
Sbjct: 1115 ARGARPGPIHFCLMGAGLPGEVEIDSGAEYPVTPQIKGAIKTLTGVVMVEEI 1166
>gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
ITI-1157]
Length = 1166
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + + LE+ + L
Sbjct: 1011 RQERKSAKGNR-FAF------------AQLSDPTGAYEVTLFSETLEKSR-EYLETGAQV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
++ E + + + V + E LR+++ + + + ++
Sbjct: 1057 VLT--AEATMEADQLKLLARSVGPADSVVAEAGATGLRIFVDQPQVVSTVARVLQDAAGA 1114
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ +G + L + E+E+ L +PI+P+I ++ + G+ V +V
Sbjct: 1115 ARNAAKGPVHLCLMDPGLPGEVEMDLGQDFPINPQIKGAIKSLDGVMDVQEV 1166
>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
Length = 1161
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ + L + +L K +II VS E++ + S+RL +SLE+
Sbjct: 1028 IQFSDTSGQYETVMFSEGLVAYE-EMLEPGKSFIITVSAENR--SEGISLRLETAQSLEE 1084
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
++++ +R+++ L +I + N G++G++ ++ G E+E+ L
Sbjct: 1085 EAVQHHKMMRLFINTVDILSQIEQNL------NSGGNGEVGIVLIQENGSREVEVLLPKR 1138
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y +S +A ++ + G+ V
Sbjct: 1139 YKVSLNVARAIKTLHGVLDVE 1159
>gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
Length = 1168
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 62/183 (33%), Gaps = 42/183 (22%)
Query: 12 RKGKKK-------------PDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLE 58
R+ +K P G ++ D + A ++ E N + +Q + +E
Sbjct: 1014 RQERKSARGNRFAFVQLSDPTGQYEVTMFSDTLEAA-----RDHLETGNQIVIQVEATME 1068
Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118
E+ +LL + ++ LRV+L D + +
Sbjct: 1069 AEQLKLL--GRSVMLADMVVANAGSSG---------------------LRVFLGDVAAIS 1105
Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
+ + N + EI++ L+ +P++P+I L + G+ +V
Sbjct: 1106 TVSDILQGAIRDNVKGGRGPVTFTIDDIELGEIDVELETQFPVNPQIKGALRSLGGVIEV 1165
Query: 178 VQV 180
++
Sbjct: 1166 QEI 1168
>gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
Length = 1165
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 19/173 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F +Q ++ + LE + L
Sbjct: 1008 SGRQERKSARGNR-FAF------------VQLSDPTGQYEVTMFSDTLEASR-EYLETGS 1053
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML-DSLRVYLQDRSPLREIHKYFENRQ 128
++ E + + + V ++ + LRV++ + + N
Sbjct: 1054 QVVL--QCEATMEADQLKLLGRSVSPVDAVVADAGGAGLRVFIDGPEVIGSVQSVLANAT 1111
Query: 129 TQNYD-KQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQ 179
+G + + E+E+ L +P++P+I + + G+ +V
Sbjct: 1112 GGAVRAGRGPVYFCLMHDDLPGEVELDLGEEFPVNPQIKGAIRSLGGVIEVED 1164
>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
Length = 1135
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 76/174 (43%), Gaps = 21/174 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 979 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEALGQFR-DMLEPGLV 1024
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT- 129
++ ++ E L + R+ VE L++ + + +L+++L+D P+ I + E+
Sbjct: 1025 VLLQLAAE--LQGEDVRARINNVELLDQAAAKTPMALKIFLRDGKPVESIRRRLEDHAQG 1082
Query: 130 --QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ ++ + + E+++ L + +SP+IA L+ ITG+ V +
Sbjct: 1083 AAARSGSAGEVTVVMML-DLETEVDMKLPGRFKVSPQIAGALKAITGVVDVQTL 1135
>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
Length = 1151
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLAQYR-EVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D L + K + +T+
Sbjct: 1046 VLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETK 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
I L+ + E+E + Y +SP+IA ++ +TG+ V +
Sbjct: 1104 VAGGN--IALVLRL-DPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHVETL 1151
>gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
Length = 1166
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDTTGGYEVTLFSDTLEKCR-EFLETGAQV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFE-NRQT 129
+I E L + + V+ ++ LR+++ + + + Q
Sbjct: 1057 VIT--AEATLEADQLKLLCRAVQPIDGMVAGAGAVGLRIFVDQPGAIGSVAAVLQGASQA 1114
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ G I + + E+EI YP++P+I ++ +TG+ V ++
Sbjct: 1115 ARGARPGPIHFCLMGAGLLGEVEIDSGAEYPVTPQIKGAIKSLTGVVMVEEI 1166
>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
Length = 1151
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L
Sbjct: 1000 SRMERRTKTGNK-------------MGIIGLSDPTGHFEAVLFSEGLAQYR-EVLEPGAA 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + E L + R+L E L+ + + LR++L+D L + K + +T+
Sbjct: 1046 VLMQLGAE--LQGEDVRARVLHAEPLDAAAAKTQKGLRIFLRDTKFLDSVVKRLQPPETK 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
I L+ + E+E + Y +SP+IA ++ +TG+ V +
Sbjct: 1104 VAGGN--IALVLRL-DPQTEVEFDIPGRYHVSPQIAGAIKAVTGVEHVETL 1151
>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
Length = 1162
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ + L +L K +II V ED+ + S+R+ +ESLE+
Sbjct: 1029 IQFSDTSGQYEAVIFSEGLSV-YGDMLESGKSFIITVIAEDR--SEGISLRIETIESLEE 1085
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
+++ +R++++ L +I + + G++ LI ++ G E+EI L
Sbjct: 1086 QALRHHKMMRLFIKTTDMLPQIKQNL------DSKGNGEVALILIQEDGLREVEIALPKK 1139
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y + + ++ + GI V
Sbjct: 1140 YKVDSRVVNAMKALPGIVDVE 1160
>gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
R11]
gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
R11]
Length = 1170
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + + LE+ + L
Sbjct: 1015 RQERKSARGNR-FAF------------AQLSDTLGAYEVTLFSEVLEKSR-EFLDTGAKV 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFE-NRQT 129
+I E + + + + V ++ + S LRVY+ D + + + E ++
Sbjct: 1061 VIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYVSDAKAVATVAQVLEDAKKA 1118
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G++ + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1119 ARNASRGEVYMYLQDPALPGDVEMDLGQPFPINPQIKGALKSLDGVMDVEEI 1170
>gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
Length = 1167
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 22/171 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
++K K GN F F+E ++ + + L + LL +P
Sbjct: 1018 SKKEKTAKSGNR-FAFVE------------LSDATGGYEVTLFSEVLAANR-DLLEPGRP 1063
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V + L+ + + ++ LE+ + LRV L+D SP+ + +
Sbjct: 1064 VLMTVDAQ--LNGEEVRLTCQEIKPLEEAVASVSAGLRVVLRDPSPIEHLRATL----DR 1117
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ +I + + EIEI L Y I+ + L+ + G+ +V ++
Sbjct: 1118 LSRGKSRIN-VLVEVDPLKEIEIELPGSYTITAQSRSALKAVPGVVEVAEL 1167
>gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
Length = 1169
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 19/174 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F +Q ++ F LE+ + L
Sbjct: 1012 SGRQERKSARGNR-FAF------------VQLSDPTGQFEVTMFSDTLEKARDH-LETGA 1057
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQ 128
++ V E + + + V ++ E +VY+ D + + + E +
Sbjct: 1058 QVVVTV--EATMESDQLKLLGRSVAPIDIAVAEAGATGFKVYVDDPAAIASVATVLEEVK 1115
Query: 129 TQNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
T +G I + + E+E+ L +P+SP+I L+ + G+ V +
Sbjct: 1116 TATQKANKGPILFCLMNADLPGEVEMDLGQDFPVSPQIKGALKSLGGVITVEDL 1169
>gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
Length = 1170
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + + LE+ + L
Sbjct: 1015 RQERKSARGNR-FAF------------AQLSDTSGGYEVTLFSEVLEKSR-EFLETGAKV 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFENRQTQ 130
+I E + + + + V ++ + S LRVY+ S + + + E+ ++
Sbjct: 1061 VIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAVATVAQVLEDAKSA 1118
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G++ + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1119 ARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVMDVEEI 1170
>gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
Length = 1170
Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + + LE+ + L
Sbjct: 1015 RQERKSARGNR-FAF------------AQLSDTSGGYEVTLFSEVLEKSR-EFLETGAKV 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFENRQTQ 130
+I E + + + + V ++ + S LRVY+ S + + + E+ ++
Sbjct: 1061 VIT--AEATMESDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAVATVAQVLEDAKSA 1118
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G++ + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1119 ARNASRGEVYMYLQDPGLPGDVEMDLGQPFPINPQIKGALKSLDGVMDVEEI 1170
>gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
Length = 1134
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F +Q ++ + LE + L
Sbjct: 979 RQERKSARGNR-FAF------------VQISDRTGAYECTVFSDTLEASRDH-LDPGSMV 1024
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E + + + + L+ + L+++++ + + + + Q
Sbjct: 1025 VVTV--EATMESDQLKLLARGIAPLDTIVADAGSVGLKIFVEAAEAIPAVAEVLTSAQEA 1082
Query: 131 NYD-KQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G I + + E+EI +P++P+I ++ + G+ V ++
Sbjct: 1083 AARVGRGPISFCLMDAGLPGEVEIDAGAEFPVTPQIKGAIKSLNGVMAVEEI 1134
>gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
sp. GAI101]
gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
sp. GAI101]
Length = 1177
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 1022 RQERKSARGNR-FAF------------AQLSDPTGAYEVTLFSDTLELARDH-LETGSKV 1067
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFE-NRQT 129
+++V E + + + V +++ + + LR+++Q+ + ++ + R
Sbjct: 1068 VVMV--EATMESDQLKLLGRSVAAIDDVVADAGNMGLRIFVQEAAAIQAVADVLAGARSA 1125
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
+G I L + E+E+ L YP++P+I + ++G+ +V ++
Sbjct: 1126 AKSAGKGPIQLCLIDPSLPGEVEVDLCSEYPMTPKIKGAIRSLSGVMEVEEI 1177
>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 1175
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 11 NRKGKKKPDGNH-DFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+++ +K GN + D + ++ + L + + LL +
Sbjct: 1027 SKQERKTRTGNKMGVIAFSDT--------------SGQYEAVLFSEGLAQYR-DLLEAGR 1071
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT 129
+I V+ ED+ + ++R+ V+SLE ++ + +LR+++++ +P+ + R
Sbjct: 1072 SVVITVAAEDR--PEGVNLRINSVQSLEDEASRIQKALRIFVRNATPINTLAGQLTVR-- 1127
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+G++ + ++ +G+ EIEI L Y ISP+IA + + G+ +V
Sbjct: 1128 ----GEGQVSFVLIKEEGEGEIEIELPNRYRISPQIASAMRAVPGVVEVE 1173
>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 1159
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK ++ G +Q +++ + ++ Q+ L + + +L +
Sbjct: 1013 DRKERRTKSGTK-------------MGIVQLSDQSGQYEAILFQESLNQYR-DMLEKGSA 1058
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + + + R+L VE L++ + + LRV++++ L + + R
Sbjct: 1059 VLLALQAN--VDGEDVRARILSVEPLDQAASRIQKGLRVFVRNEDSLASVAQKLTTR--- 1113
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G+I LI + + G E+E+ L + +S ++A L+ I GI V +
Sbjct: 1114 ---GDGEISLILMTNGG--EVEVRLPGTFNVSAQLAGSLKTIPGIVAVEPI 1159
>gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
Length = 1138
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 983 RQERKSARGNR-FAF------------AQMSDPTGAYEVTLFSDTLEAARDH-LEAGSKI 1028
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML-DSLRVYLQDRSPLREIHKYFENRQTQ 130
+ V E + + + V ++ + ++ L+V++ + + E
Sbjct: 1029 FVTV--EATMESDQLKLLGRSVGPIDAATADVSSMGLKVFVDAPEAVAAVATVLEGAGRA 1086
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
QG + L + + E+E+ L + ++P+I ++ ++G+ +V ++
Sbjct: 1087 VKGRAQGPVMLCLMGADLPGEVEVELGQDFIVNPQIKGAIKSLSGVLEVEEI 1138
>gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
Length = 1163
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 61/172 (35%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F +Q ++ + + LE+ + L
Sbjct: 1008 RQERKSARGNR-FAF------------VQLSDTTGGYEVTMFSETLEKSR-DYLETGSQV 1053
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFE-NRQT 129
++ V E + + V ++ + LR++++ + + + ++
Sbjct: 1054 VVTV--EATSESDQLKLLARSVSPIDTVVADAGAMGLRIFVESPGAVETVARVLARAQEA 1111
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G + + E+E+ + ++P+I ++ + G+ V +
Sbjct: 1112 ARNAARGPVRFCLVDQGLPGEVEMDAGQEFAVNPQIKGAIKSLDGVWDVEDI 1163
>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 1162
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ + L +L K +II V ED+ + S+R+ ++SLE+
Sbjct: 1029 IQFSDTSGQYEAVIFSEGLSV-YGDMLEPGKSFIITVVAEDR--SEGISLRIETIQSLEE 1085
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
++++ +R++L+ L +I + N + +G++ L+ ++ G E+EI L
Sbjct: 1086 QALQCHKMMRIFLKTIDMLPQIEQNL------NSEGKGEVALVLIQEDGLREVEIALPER 1139
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y ++ + ++ ++G+ V
Sbjct: 1140 YKVNAHVVNAIKVLSGVVDVE 1160
>gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
Length = 1170
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + L
Sbjct: 1015 RQERKSQRGNR-FAF------------AQLSDTTGAYEVTIFSDVLEKAR-EYLETGSKV 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFENRQTQ 130
+I E + + + + ++ + S LRVYL+D + + + + + ++
Sbjct: 1061 VIT--AEATMESDQLKLLMRSAGPVDAAIADAGRSSLRVYLEDATAVSTVARVLGDAKSA 1118
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G I L ++E+ L +PI+P+I L+ + G+ +V ++
Sbjct: 1119 AKSASPGAIYLYLQDPGLPGDVEMDLGQMFPINPQIKGALKSLEGVMEVEEI 1170
>gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3]
gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3]
Length = 1187
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ F + LE+ + L
Sbjct: 1032 RQERKSARGNR-FAF------------AQMSDPTGAFEVTLFSEVLEKSR-EFLETGSHV 1077
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
++ E + + + V + E LRV++ + + +
Sbjct: 1078 VLT--AEATMEADQLKLLARSVGPADAVVAEAGATGLRVFMDNAGAVETVAHILAEAAQA 1135
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ +G + L + E+E+ L +P++P+I L+ + G+ V ++
Sbjct: 1136 ARNAARGPVQLCLMDPGLPGEVEMDLGQEFPLNPQIKGALKSLDGVVDVEEM 1187
>gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
bacterium KLH11]
gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
bacterium KLH11]
Length = 1166
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ F + LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDPTGAFEVTLFSETLEKSR-EFLETGAQV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
++ E + + + V ++ E LRV+++D + L + E +T
Sbjct: 1057 VLT--AEATMEADQLKLLGRSVGPVDAVVAEAGATGLRVFVEDAAVLPTMATVLEEAETS 1114
Query: 131 -NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G + + E+E+ L Y I+P+I L+ + GI+++ ++
Sbjct: 1115 VKRAAKGPVYVCLFDPGLPGEVEMDLGRNYAINPQIKGALKSLEGISEIEEI 1166
>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
Length = 1166
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
++ F + +QLE LL+ + I+ V ED+ + S+R++ + +E ++
Sbjct: 1035 LSDATGQFEVVLFDEQLEAAS-ELLQAGRSLILNVVGEDR--PEGVSLRVMMIRGIEDEA 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYP- 159
L ++L+D SPL I +G + L+ + G E+E+ L
Sbjct: 1092 ARTQYLLNIFLRDASPLPSIASQL------GKQGEGIVKLVVIDFDGGREVEVELPGKRL 1145
Query: 160 ISPEIAFDLEHITGITKVV 178
+SP+IA L+ I G+
Sbjct: 1146 VSPQIANALKAIDGVVHAE 1164
>gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3]
Length = 1140
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ + L +L K +II V ED+ + ++R+ V+SL++
Sbjct: 1007 IQFSDTSGQYEAVIFSEGLSV-YGDMLEPGKSFIITVIAEDR--SEGINLRIETVQSLDE 1063
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
+ + +R++++ L +I + + G+I ++ ++ E+EI L
Sbjct: 1064 DAFQYHKMMRLFIKTTDMLSQIEQNL------DSKGNGEIAIVLIQEDEFREVEIALPKR 1117
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y + + ++ + G+ V
Sbjct: 1118 YKVDTRVVNAMKALPGVIDVE 1138
>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
Length = 1153
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ Q+ L + + +L + ++ +S + + R++ VE L
Sbjct: 1020 VQLSDTTGQYEAILFQEALNQYR-DVLEKGAAVLVTLSA--SVEGEDVRARIVAVEPLAN 1076
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH- 157
+ LR+ ++D+SPL I +G++ L+ R EIEI L
Sbjct: 1077 AAARAQKGLRIVVRDQSPLDRIKNKLT------GKGEGEVSLLIKRDVAPEEIEIRLPGS 1130
Query: 158 YPISPEIAFDLEHITGITKVVQV 180
YP++ ++A L I G+ V +
Sbjct: 1131 YPVNAQVASALRAIPGVVDVEHL 1153
>gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
Length = 1177
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 1022 RQERKSARGNR-FAF------------AQLSDPTGAYEVTLFSDTLELARDH-LETGSKV 1067
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
+++V E + + + V ++ + + LR+++ D ++ + ++
Sbjct: 1068 VVMV--EATMESDQLKLLGRSVVPIDTVVEDAGNMGLRIFVDDAGAIQAVADVLAGARSA 1125
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
+G + L + E+E+ L YP++P+I + +TG+ +V ++
Sbjct: 1126 ARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177
>gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
Length = 1166
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 19/171 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + + LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDPTGAYEVTLFSETLEKSR-EHLETGSKV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E + + + V ++ + + +R+++ L +I Q
Sbjct: 1057 VVTV--EATMESDQLKLLGRAVMPVDAAAAQGGPSGMRIFVDTEMALSQIASVLGRAAEQ 1114
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
+ I L E+E+ L + +P++PEI ++ + G+ V
Sbjct: 1115 LPKAPRAPIVLRLAAPGLPGEVEMDLSERFPVTPEIKGAVKSLDGVLAVED 1165
>gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
Length = 1177
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE + L
Sbjct: 1022 RQERKSARGNR-FAF------------AQLSDPTGAYEVTLFSDTLELARDH-LETGSKV 1067
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
+++V E + + + V ++ + + LR+++ D ++ + ++
Sbjct: 1068 VVMV--EATMESDQLKLLGRSVVPIDTVVEDAGNMGLRIFVDDAGAIQAVADVLAGARSA 1125
Query: 131 NYDK-QGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
+G + L + E+E+ L YP++P+I + +TG+ +V ++
Sbjct: 1126 ARSAGKGPVQLCLMDPTLPGEVEVDLCAEYPVTPKIKGAIRSLTGVMEVEEI 1177
>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
Length = 1166
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDTTGAYEVTIFSDVLEKSRDH-LETGSKV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFE-NRQT 129
+I E + + + + ++ + S LRVYL+ S + + E ++
Sbjct: 1057 VIT--AEATMESDQLKLLMRSAGPVDSAIADAGRSSLRVYLESASAVATVATVLEDAKKA 1114
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G+I + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1115 AKNASPGEIYVYLQDPALPGDVEMDLGQLFPINPQIKGALKSLEGVMDVEEI 1166
>gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
Length = 1166
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 19/173 (10%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ +K GN F F +Q ++ + LE + L
Sbjct: 1010 SRQERKSARGNR-FAF------------VQLSDPTGQYEVTMFSDTLETARDH-LESGSQ 1055
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQT 129
++ V E + + + V ++ + L+V+++ + + E
Sbjct: 1056 VVLSV--EATMEADQLKLLARSVSPIDVAVADAGSSGLKVFVEHADAINAVASVLEGAGR 1113
Query: 130 QNYDKQG-KIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
I + E+E+ L +P++P+I L + GI +V +V
Sbjct: 1114 DGARGGRGPILFCLMDPDLPGEVELDLGAEFPVNPQIKGALRSLPGILEVQEV 1166
>gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
2831]
gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
2831]
Length = 1172
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R ++ GN + ++ +F ++ + L + + +L +P
Sbjct: 1024 DRAERRTKTGNK-------------MGIVTLSDRTAHFEAIIFSEGLGQYR-DILEPGRP 1069
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + L + R+L E L++ +R++L D + + + R
Sbjct: 1070 LVLQLQAN--LEGEDVRARILTAEPLDQAVARHQKGIRIHLSDPRGVAPVQQRLSMR--- 1124
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
+ ++ LI G+ E+EI L + SP +A L + G+ +V
Sbjct: 1125 ---GESEVSLILKLDGGEREVEIRLPGKFQASPALAGQLRTVPGVVQVE 1170
>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
Length = 1140
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ + ++ + L +L K +II V ED+ + S+R+ ++SLE+
Sbjct: 1007 IQFSDTSGQYEAVIFSEGLSV-YGDMLELGKSFIITVIAEDR--SEGISLRIETIQSLEE 1063
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-H 157
++++ +R++L+ L +I + N + +G++ LI ++ G E+EI L
Sbjct: 1064 QALQCHKMMRIFLKTIDTLSQIEQNL------NSEGKGEVALILIQEDGLREVEIALPER 1117
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y ++ + ++ ++G+ V
Sbjct: 1118 YKVNAHVVNAIKVLSGVVDVE 1138
>gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
Length = 1152
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ ++ G+ +Q ++ + ++ Q+ L + + LL +
Sbjct: 1006 DRQERRTKSGSK-------------MGIVQLSDPSGQYEAILFQEGLNQYR-DLLEKGAS 1051
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++V+ + R++ E L+ + + LR+++ D PL +I +
Sbjct: 1052 LLLVLQAA--VEGDEVRARIVSAEPLDHAASRVQKGLRIFVADDKPLDQIKQSL------ 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ LI + EIE+ L Y +S + A L+ I GI V V
Sbjct: 1104 RPQGDGEVALILQ--TPECEIELKLPGKYGVSAQSAGALKAIPGILAVEHV 1152
>gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
Length = 1177
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 19/171 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + LL
Sbjct: 1022 RQERKSAKGNR-FAF------------AQLSDPSGAYEVTIFSDTLEKSR-DLLETGSKV 1067
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQ 130
++ V E + + + +E + LR++++D + ++ Q
Sbjct: 1068 VVTV--EATMESDQLKLLARSFGPVETVVADAGASGLRIFIEDPGTVAQVASVLSRAAEQ 1125
Query: 131 NYD-KQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
+G + L + E+E+ L +P++PEI ++ + G+ V
Sbjct: 1126 MPKAGRGPVRLCLSAAGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVLAVED 1176
>gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
Length = 1166
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + L
Sbjct: 1011 RQERKSARGNR-FAF------------AQLSDTTGAYEVTIFSDVLEKSRDH-LETGSKV 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFE-NRQT 129
+I E + + + + ++ + S LRVYL+ S + + E ++
Sbjct: 1057 VIT--AEATMESDQLKLLMRLAGPVDSAIADAGRSSLRVYLESASAVATVATVLEDAKKA 1114
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G+I + ++E+ L +PI+P+I L+ + G+ V ++
Sbjct: 1115 AKNASPGEIYVYLQDPNLPGDVEMDLGQLFPINPQIKGALKSLEGVMDVEEI 1166
>gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
Length = 1139
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN F FL ++ F + + L + + +L+
Sbjct: 993 KQERKSKKGN-PFAFLS------------LSDPTGQFEIVVFSEVLAQSR-QLMEPGSAV 1038
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
++ V E + + +R + S+++ + L+++++D+S + + R
Sbjct: 1039 VLNV--EIERIGEEVKLRAQSLRSVDEVVKDTGAGLKIFIEDKSSIEPLKSRLAER---- 1092
Query: 132 YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
+G + LI + G E+E+ L D Y ++P++ ++ + GI ++ +
Sbjct: 1093 --GKGIVSLILMTEGG-GEVELKLKDRYRVTPQLRGAIKSVPGIVEIQDI 1139
>gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1]
Length = 1162
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+Q ++ ++ ++ + L + +L K +I+ V ED+ + +R+ ++SLEK
Sbjct: 1029 IQFSDTSGHYEAVIFSEGLSIYE-DMLEPGKSFIVTVIAEDR--SEGIGLRIETIQSLEK 1085
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DH 157
+S+ ++R++++ L +I +Y + G++ I ++ G E+E+ L
Sbjct: 1086 ESIRDCKTMRLFIKTADILPQIEQYLKP------GGNGEVAFILIQENGVREVEVMLSKR 1139
Query: 158 YPISPEIAFDLEHITGITKVV 178
Y ++ ++A ++ I G+ V
Sbjct: 1140 YKVNLQVANAIKAIHGVIDVE 1160
>gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601]
gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601]
Length = 1174
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 19/171 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F Q ++ + LE+ + LL
Sbjct: 1019 RQERKSAKGNR-FAF------------AQLSDPSGAYEVTIFSDTLEKAR-DLLETGTKV 1064
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYF-ENRQT 129
++ V E + + + +E+ + +++Y+++ + ++ +
Sbjct: 1065 VVTV--EATMESDQLKLLARSFGPVEQVVADAGAAGMKIYIENPDTVAQVASVLGRAAEQ 1122
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQ 179
+G + L F S E+E+ L +P++PEI ++ + G+ V
Sbjct: 1123 MPRAGRGPVRLCFAGSGLPGEVEMDLRQEFPVTPEIKGAVKSLDGVMAVED 1173
>gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense
MSR-1]
Length = 1159
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 68/171 (39%), Gaps = 23/171 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ + G+ + F+ ++ + + L + +L P
Sbjct: 1011 SKQERTSAKGSR-YAFVTA------------SDSSGMYEVTCFSEVLAASR-EILEAGGP 1056
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+ V +L ++ + + SL++++ + L+++++D +P+ + +
Sbjct: 1057 LLFEVDA--RLEEEQLRLTCQRIASLDQEAAKAAAGLKIFIRDDAPIPTLVQLIAKE--- 1111
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ +I ++ G E+E+ L + +SP L ++G+ V ++
Sbjct: 1112 -AKGRNRITIVSQL--GTREVEVGLKNTISLSPGFMGALRSVSGVVDVEEI 1159
>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
Length = 1165
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 1017 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DVLESGKS 1062
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + +
Sbjct: 1063 FLLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------ 1114
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVV 178
N G + I ++ +GK E+E+ L Y I+ EIA L G+ V
Sbjct: 1115 NAKGDGLVSFIVIKEEGKREVEVALPEKYRITAEIAAALRAAPGVVDVE 1163
>gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 1153
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ + GN F F +Q ++ F + L LL + KP
Sbjct: 1006 KQVRVSQRGNK-FAF------------VQFTDQTGVFETTFFSDVLSNSS-DLLNDDKPL 1051
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+ VS K+ + V+ L+ + ++++D PL ++ +
Sbjct: 1052 L--VSANLKVEENGPRLLAARVQLLDDAVAAWHGGVGLWIRDDKPLEQLKSAL----RDD 1105
Query: 132 YDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
+ ++ L F ++ + L + +S E+ +L I G+ +V +
Sbjct: 1106 GPGKAEVKLHFTVDG--HDVRVALAGRFKLSGELRQNLRRIPGVLEVRDL 1153
>gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5]
gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
Length = 1139
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
RK + G+ + +++ F + L + LL E
Sbjct: 991 RKERTTRTGSR-------------MAWVMLSDQAGGFEVTLFSELLATAR-ELLAEGA-- 1034
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+++V+ + +L + + + VE L+K + LR+ ++ R L I E +
Sbjct: 1035 MLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRALLE----RE 1090
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G++ L G ++I L + +SP +A ++ I G+ +V ++
Sbjct: 1091 GRGKGRVLLAPRIDTGAR-LDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139
>gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
ATCC 49957]
gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
ATCC 49957]
Length = 1147
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
N K + G+ L+ ++ + + L +P L
Sbjct: 998 NSKERTTRTGSR-------------MAWLKLSDSSGSTEVTLFSEVLLRARPILTEGNA- 1043
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++VS E ++ + + +E L+K + + +R++L+D + I + +
Sbjct: 1044 --VLVSCEARMEGETLRLTAQGIEELDKAASGVGQQIRLWLEDAVAIEPIREMLA----R 1097
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVV 178
+G++ LI +G+ E+E+ L + +SP +A L+ + G+ V
Sbjct: 1098 EGQGRGRVILIPRLGEGQ-ELEVVLPGAWNVSPRLAQALKVVPGVASVE 1145
>gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
Length = 1139
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
RK + G+ + +++ F + L + LL E
Sbjct: 991 RKERTTRTGSR-------------MAWVMLSDQAGGFEVTLFSELLATAR-ELLAEGA-- 1034
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+++V+ + +L + + + VE L+K + LR+ ++ R L I E +
Sbjct: 1035 MLLVTADLRLDGESLRVTAVDVEPLDKAAANAGAGLRITVEGREALGSIRALLE----RE 1090
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G++ L ++I L + +SP +A ++ I G+ +V ++
Sbjct: 1091 GRGKGRVLLAPRIDTAAR-LDIALPGGFNVSPRLAQAMKMIRGVAEVAEL 1139
>gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
HTCC2654]
gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
HTCC2654]
Length = 1171
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 19/172 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ +K GN F F+ + + LE+ + + L
Sbjct: 1016 KQERKSAKGNR-FAFVAMT------------DPTGACEITVFSETLEQNR-QFLETGMNV 1061
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFE-NRQT 129
++ V E ++ + ++ + +LRVY+ + + E R+
Sbjct: 1062 VVTV--EATYESEQLKLLARSAAPVDTVVQDAGGMALRVYVDSPGVVATVAGLLESAREQ 1119
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ G + + E+E+ + +P++P+I L+ ++G+ V +V
Sbjct: 1120 AKGARPGAVSFCLMDPTLPGEVEMDIGAEFPLNPQIKGALKSLSGVVDVEEV 1171
>gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
Length = 1128
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 66/173 (38%), Gaps = 19/173 (10%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ ++ +K GN F F Q + + LE+ K
Sbjct: 971 SGKQVRKSAKGNR-FAF------------AQLTDPTGAYEVTIFSDVLEKFGDNF-DIGK 1016
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYF-ENR 127
+ V E + + + + + ++ + L++++ + ++ I E
Sbjct: 1017 NVTLTV--EANVDADQLKLLVRSAQPVDVSVQDAAAMGLKIFVSNEEAVKSIATRLSEIS 1074
Query: 128 QTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQ 179
+ G + L+ + E+EI L + YP++P+I ++H+ G+ +V++
Sbjct: 1075 KDAPQRALGPVHLVLSHPELPGEVEIVLKNSYPLNPQIKGAIKHVDGVLEVME 1127
>gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
Length = 1164
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 47/187 (25%)
Query: 12 RKGKKKPDGN-------------HDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLE 58
R+ +K GN ++ D + K+++ E + +Q + LE
Sbjct: 1007 RQERKSARGNRFAFVQASDPTGLYEVTVFSDTLE-----KVRDHLETGKNVVMQVEATLE 1061
Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD---SLRVYLQDRS 115
++ +LL ++ + LRV+++ +
Sbjct: 1062 ADQLKLL------------------------CRSAAPIDDAVADARGAMMGLRVFVEAEA 1097
Query: 116 PLREIHKYF-ENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY-PISPEIAFDLEHITG 173
L I + + +G + L + E+++ L P++P+I L+ + G
Sbjct: 1098 ALPNIAGLLGRMAEDPSIRTRGPVTLALIDPDLPGEVDVLLGEALPVNPQIKGALKSLAG 1157
Query: 174 ITKVVQV 180
+ V ++
Sbjct: 1158 VALVEEM 1164
>gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
Length = 1144
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ KK GN F F+ ++ + LE + L
Sbjct: 992 SRQEKKSAKGNR-FAFVS------------LSDPTGLYEVTVFSDTLEAARG-FLEPGMN 1037
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYFENRQT 129
++ V E L + + V+ +++ + E + LR++L +
Sbjct: 1038 VVLTVKAE--LEGETLKLLANAVQPIDQVAAEAGGASLRIHLN--RAEAAASVAALFARV 1093
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+N +G+I L G EI++TL YP++P+I ++ + G+ V +V
Sbjct: 1094 ENSRSRGQIILCIPDQTG-REIDLTLPADYPVTPQIKGAIKAMPGVVLVEEV 1144
>gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1]
gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1]
Length = 1143
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 22/172 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
N K + G+ ++ ++ ++ + L + LR
Sbjct: 992 NAKERTTRTGSR-------------MAWVRLSDAGGSYEITVFSEVLSRSR-DALRIGAC 1037
Query: 71 YIIVVSQEDKLSLQ-RDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT 129
++ + K + I + L+ + +RV+L+D + + +I T
Sbjct: 1038 VLVT--ADIKAEGEDSIRITAQDIMPLDDAAGGTAGMMRVWLKDNADIGQIRAVLSRPDT 1095
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G + LI ++ + E+EI L + ++P + L+ I G+ +V +V
Sbjct: 1096 ---KGKGHVVLIPRLNEDQ-EMEIELPGGFNVTPRLGQALKLIPGVERVEEV 1143
>gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
Length = 1162
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ + GN F F +Q + F + L + LL P
Sbjct: 1015 KQIRTSKSGNR-FAF------------VQLTDRTGVFEVTLFSEVLASCR-ELLDAGIPL 1060
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+ V + ++ + +E L+K + L ++++D L +
Sbjct: 1061 L--VKADARIEDDAMRLLASRMEPLDKAVEQTAAGLEIHVRDTRALEPLRSLIAQE---- 1114
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G+I ++ G+ ++ I L Y +S ++ ++ I GI V ++
Sbjct: 1115 GRGRGRIRVVV--PTGEGDVGIVLPEAYKVSSQLRGAVKAIPGIDFVREL 1162
>gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 1115
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 23/171 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ + G+ LQ ++ F + L + LL P
Sbjct: 967 SKQERVSAKGSR-------------YAFLQFSDASGMFEVTCFSEILAASR-DLLDAGGP 1012
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I V KL ++ + + SL++++ + +R+ + D S +R++ +
Sbjct: 1013 LLIDVDA--KLEEEQLRMTCQRIASLDQEAAKAAAGIRIIISDDSAIRQLAELI----NG 1066
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ ++ ++ E+E+ L + +SP+ L I GI +V ++
Sbjct: 1067 EARGRNRVAIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIVEVEEI 1115
>gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
51888]
gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
51888]
Length = 1180
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 29/175 (16%)
Query: 13 KGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYI 72
+ ++ GN F F ++ F ++ L + LL P I
Sbjct: 1026 RERRSQKGNK-FAFAS------------FSDATGQFEAVIFSDTLAVCR-ELLEPGTPVI 1071
Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ-------DRSPLREIHKYFE 125
+ V E +R+ +E+L+K + + +LRV L + + L EI +
Sbjct: 1072 VSVEAE--RDGDTLKMRVQSIEALDKAAAGVARNLRVVLDQRECAGANGARLAEISSRLK 1129
Query: 126 NRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
G++ ++ E+++ L Y +SP A + + + +V++
Sbjct: 1130 PTHR-----GGEVRIVLPLLDRGCEVDLILPGRYDVSPLEAGRIAALPIVVEVIE 1179
>gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW]
gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW]
Length = 1165
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + GN F F+ ++ F + L + LL +
Sbjct: 1017 RQERTAKSGNR-FAFIS------------MSDSSGVFEVTLFSEALAPAR-ELLEAGRAV 1062
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+++V + + + V LE++ +R+ ++D +PL + + +
Sbjct: 1063 LMLVDVQQN--GEELRLTGSQVLPLEEEVARTAAGMRIVVKDETPLSTLQSVLK----RL 1116
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLDHY-PISPEIAFDLEHITGITKVVQV 180
+G+I + + E+EI L I ++ I G+ V +
Sbjct: 1117 RPGRGRIQ-VAVEVDPMTEVEILLPQALMIDASSRAAIKSIPGVVDVQDL 1165
>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
Length = 248
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ +K GN + ++ F ++ + L + + +L K
Sbjct: 121 SKQERKTRTGNK-------------MGIIVFSDSSGQFEAVLFSEMLNQYR-DMLESGKS 166
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+++ + E++ + +R+ ++SLE+KS++M +LRVY++D PL+ + +
Sbjct: 167 FLLTATGEER--PEGIGLRIQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------ 218
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH 157
N G + I ++ +GK E+E+ L
Sbjct: 219 NAKGDGLVSFIVIKEEGKREVEVALPE 245
>gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1]
gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1]
Length = 1163
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
++R+ KK GN F F +Q ++ + LE+ + LL
Sbjct: 1010 SSRQEKKSAKGNR-FAF------------VQLSDPTGLYECTVFSDVLEQAR-DLLEPGG 1055
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
++ V E L + V ++ + + SLRV+L
Sbjct: 1056 HVVLTV--EATLEGDSLKLLARGVSPIDAVAADAGAMSLRVHLDRA---EAAASVAALLA 1110
Query: 129 TQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ + + G EI+I L + +SP+I L + G+ V ++
Sbjct: 1111 RAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163
>gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029]
gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
17029]
Length = 1163
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
++R+ KK GN F F +Q ++ + LE+ + LL
Sbjct: 1010 SSRQEKKSAKGNR-FAF------------VQLSDPTGLYECTVFSDVLEQAR-DLLEPGG 1055
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
++ V E L + V ++ + + SLRV+L
Sbjct: 1056 HVVLTV--EATLEGDSLKLLARGVSPIDAVAADAGAMSLRVHLDRA---EAAASVAALLA 1110
Query: 129 TQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ + + G EI+I L + +SP+I L + G+ V ++
Sbjct: 1111 RAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163
>gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
Length = 1163
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
++R+ KK GN F F +Q ++ + LE+ + LL
Sbjct: 1010 SSRQEKKSAKGNR-FAF------------VQLSDPTGLYECTVFSDVLEQAR-DLLEPGG 1055
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
++ V E L + V ++ + + SLRV+L
Sbjct: 1056 HVVLTV--EATLEGDSLKLLARGVSPIDAVAADAGAMSLRVHLDRA---EAAASVAALLA 1110
Query: 129 TQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ + + G EI+I L + +SP+I L + G+ V ++
Sbjct: 1111 RAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163
>gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025]
gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC
17025]
Length = 1163
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 21/173 (12%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
++R+ KK GN F F +Q ++ + LE+ + LL
Sbjct: 1010 SSRQEKKSAKGNR-FAF------------VQLSDPTGLYECTVFSDVLEQAR-DLLEPGG 1055
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEM-LDSLRVYLQDRSPLREIHKYFENRQ 128
++ V E L + V ++ + + SLRV+L
Sbjct: 1056 HVVLTV--EATLEGDSLKLLARGVAPIDAVAADAGAMSLRVHLDRA---EAAASVAALLA 1110
Query: 129 TQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+ + + G EI+I L + +SP+I L + G+ V ++
Sbjct: 1111 RAQGRARAPVRICVRDPSGGQEIDIELGQDFAVSPQIRSALRAVPGVEMVEEI 1163
>gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1]
Length = 1154
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 23/171 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ + G+ LQ ++ F + L + LL P
Sbjct: 1006 SKQERVSAKGSR-------------YAFLQFSDASGMFEVTCFSEILATSR-ELLDAGGP 1051
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I V KL + + + SL++++ + +RV + D S +R++
Sbjct: 1052 LLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADLI----NG 1105
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ + ++ E+E+ L + +SP+ L I GI +V ++
Sbjct: 1106 EARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1154
>gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
Length = 1118
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 23/171 (13%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+++ + G+ LQ ++ F + L + LL P
Sbjct: 970 SKQERVSAKGSR-------------YAFLQFSDASGMFEVTCFSEILATSR-ELLDAGGP 1015
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
+I V KL + + + SL++++ + +RV + D S +R++
Sbjct: 1016 LLIDVDA--KLEEDQLRMTCQRIASLDQEAAKAAAGIRVIISDDSAIRQLADLI----NG 1069
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ + ++ E+E+ L + +SP+ L I GI +V ++
Sbjct: 1070 EARGRNLVRIVARADN--REVELGLKSNITLSPKFMGSLRSIPGIAEVEEI 1118
>gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
Length = 1163
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 20/173 (11%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
+ R+ +K GN F F Q ++ + LE +P LL
Sbjct: 1009 SGRQERKSARGNR-FAF------------AQLSDPSGQYEVTIFSDVLEAARP-LLEAGT 1054
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQT 129
I+ E L + + ++ + + + R+Y+ L ++ EN
Sbjct: 1055 QVIL--QAEATLEADQLKLLARSFSAVGEMDTGV-EGYRIYIDREEALAQVSSVLENAIA 1111
Query: 130 QNYDK-QGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G I + E++I YP++P+I L + G+ +V++V
Sbjct: 1112 AKVRAPRGHIAFEIIVPD-VGEVKIEAPRTYPLNPQIRAALRAVNGVQEVIEV 1163
>gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
23769]
gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
23769]
Length = 1142
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK + GN ++ ++ + L + +L
Sbjct: 993 DRKERPTRTGNK-------------MAWVRLSDASGGCEVTFFSEVLSRSR-EILSAGNA 1038
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ E +L + I V LE+ + + LR++ + I +
Sbjct: 1039 VVVT--AELRLDGEALRITASDVMELEQAAADAAAELRIWFDRADAIVPIRDILQGH--- 1093
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
+G+I L ++E+TL Y ++P IA ++ I G+ +V Q
Sbjct: 1094 -SGGRGRIIL-LPSVAETRDVEVTLGERYRVTPRIAQMIKSIEGVGRVEQ 1141
>gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170]
gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170]
Length = 1170
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
++ ++ + ++ + L + LL +P + V + +L + + +E L+
Sbjct: 1037 VELSDATGSCETMVFSEVLGASR-ELLDSGRPLL--VRADARLEGEEVRLLAQAIELLDD 1093
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DH 157
++V D P+ + + D G ++ + G E+E L
Sbjct: 1094 AVARAARRIKVSFSDSGPIPRLAEII------RADGPGNRNILLVADLGDREVEFRLDGG 1147
Query: 158 YPISPEIAFDLEHITGITKVVQV 180
+ + E L ++ G+ +V +V
Sbjct: 1148 FALRSETLAALRNVPGVGEVREV 1170
>gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003]
gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003]
Length = 1169
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 20/173 (11%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R +K GN F F+ ++ + LE + L +
Sbjct: 1013 RSERKSAKGNR-FAFVS------------LSDPTGPYEVTVFSDTLEACRAH-LEPGQAV 1058
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKS--MEMLDSLRVYLQDRSPLREIHKYFEN-RQ 128
++ V + + + + ++ + L ++L+ + + FE
Sbjct: 1059 VLTVKVD--VEGETVKMLCQTAAPIDTVASDAGAGSGLLIHLETPEAVSSVAALFERIAA 1116
Query: 129 TQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
+G++ + + +IT P++P++ L + G+ +V +V
Sbjct: 1117 EGRVKSRGQVTFSVFDPEKRRRYQITAGRELPVNPQVKGALRSLRGVVQVEEV 1169
>gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
Length = 1139
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 22/171 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
++K + GN ++ ++ + L + +L
Sbjct: 990 DKKERPTRTGNK-------------MAWVRLSDASGGCEVTVFSEVLTRVR-DILVAGTA 1035
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
I+V+ + KL + + + LE + + +RV+L+ L ++ E ++
Sbjct: 1036 --ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDALPDLQAILEPQK-- 1091
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
G++ L ++E+ L Y ++P + L ++G+++V QV
Sbjct: 1092 --GGAGRVVL-LPGVADSCDVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139
>gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO
3283-01]
gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-01]
gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-03]
gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-07]
gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-22]
gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-26]
gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-32]
gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
3283-12]
Length = 1139
Score = 93.9 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 65/171 (38%), Gaps = 22/171 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
++K + GN ++ ++ + L + +L
Sbjct: 990 DKKERPTRTGNK-------------MAWVRLSDASGGCEVTVFSEVLTRVR-DILVAGTA 1035
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
I+V+ + KL + + + LE + + +RV+L+ L ++ E ++
Sbjct: 1036 --ILVTADLKLEGEALRLTATDIVDLEAAAAQGQSEMRVWLEKPDALPDLQAILEPQK-- 1091
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITL-DHYPISPEIAFDLEHITGITKVVQV 180
G+I L ++E+ L Y ++P + L ++G+++V QV
Sbjct: 1092 --GGAGRIVL-LPGVADSCDVEVRLRGRYKVTPVLGQRLRTLSGVSRVEQV 1139
>gi|218513825|ref|ZP_03510665.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
Length = 86
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149
+ ++SLE+KS++M +LRVY++D PL+ + + N G + I ++ +GK
Sbjct: 1 IQTIQSLEEKSLQMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKR 54
Query: 150 EIEITLD-HYPISPEIAFDLEHITGITKVV 178
E+E+ L Y I+PEIA L G+ V
Sbjct: 55 EVEVALPEKYRITPEIAAALRAAPGVVDVE 84
>gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
Length = 1144
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK + GN ++ ++ + L + +L
Sbjct: 995 DRKERPTRTGNK-------------MAWVRLSDASGGCEITFFSEVLSRAR-EILVAGNA 1040
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + KL + I V LE+ + E +R++ L I +
Sbjct: 1041 VVVT--ADLKLEGEALRITASDVMELEQAAAEAAAEMRIWFDRADALEPIRDVLQGH--- 1095
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
+G++ L ++E+TL Y ++P +A ++ I G+ +V Q
Sbjct: 1096 -GMGRGRVIL-LPSVAETRDVELTLGERYRVTPRVAQMIKAIEGVDRVEQ 1143
>gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222]
gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
Length = 1156
Score = 88.5 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+R+ KK G F F+ ++ + L+ + + L
Sbjct: 1000 HRQEKKSARGTR-FAFVG------------LSDPTGLYEVTVFSDTLDAHR-QHLEPGAN 1045
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDS-LRVYLQDRSPLREIHKYF---EN 126
++ V E + + V L++ + + L V + + I + +
Sbjct: 1046 VVLQVQVEPS--GDQVKLLARSVMPLDQAVADAGANRLAVEIAGLDAVPGIAEALARIQA 1103
Query: 127 RQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQ 179
+G I L ++IEI + P++ L + G+ +VV+
Sbjct: 1104 ELNAPARARGPISLRLKDGADLVDIEIA-EDAPLTTPARQALRVVPGVLEVVE 1155
>gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter
diazotrophicus PAl 5]
Length = 1142
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK + G+ ++ ++ + L + +L
Sbjct: 993 DRKERPTRTGSK-------------MAWVRLSDSSGGCEVTLFSEVLSRTR-DILTAGTA 1038
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + +L + I V +LE+ + + LR++ + IH +
Sbjct: 1039 VLVT--ADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEK-- 1094
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQ 179
+GK+ L ++E+ L Y ++P +A ++ + G+ +V Q
Sbjct: 1095 --GGRGKVIL-LPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141
>gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
PAl 5]
Length = 1142
Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK + G+ ++ ++ + L + +L
Sbjct: 993 DRKERPTRTGSK-------------MAWVRLSDSSGGCEVTLFSEVLSRTR-DILTAGTA 1038
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ + +L + I V +LE+ + + LR++ + IH +
Sbjct: 1039 VLVT--ADLRLDGEALRITGSDVVALEQAAADAAAELRIWFDREDAITPIHAILSEEK-- 1094
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQ 179
+GK+ L ++E+ L Y ++P +A ++ + G+ +V Q
Sbjct: 1095 --GGRGKVIL-LPSVAETRDVEVRLGGAYRVTPRMAQMIKAVAGVARVEQ 1141
>gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
Length = 1143
Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 22/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + G F F+ ++ + L + L + + +L K
Sbjct: 993 RQERASQSGEK-FAFVS------------LSDPTGEYEVLFPPESLRKCR-DVLEPGKAV 1038
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-LREIHKYFENRQTQ 130
I V + + E +EK ++ LRV+L + + + + E Q+Q
Sbjct: 1039 AIKVRAKAR--DGEVRFFGDDAEPIEKAIENVVAGLRVHLSPSAAEIEALKRRLEPAQSQ 1096
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ + S G EIE+ L Y + + L+ G+ + V
Sbjct: 1097 KG---GEVTFVAAISGG-REIELRLPGRYSLDASLRGALKTAPGVALLEDV 1143
>gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
Length = 1148
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 22/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ + G F F+ ++ + L + L + + LL +
Sbjct: 998 KQERPSRTGEK-FAFVT------------FSDPTGEYEVLFPPESLRKCR-DLLEPGRAV 1043
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-LREIHKYFENRQTQ 130
++ V K S VE +EK ++ LRV++ RS + + + E
Sbjct: 1044 VLKVRA--KASEGEVRFFGDDVEPVEKAIENVVAGLRVHVAPRSAEIEALKRRLEGVTNT 1101
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ L+ G E+E+ L + + + L+ G+ + +
Sbjct: 1102 RG---GEVILVAGL-DGGREVELKLPGRFTLDGAVRGALKTAPGVVFIEDL 1148
>gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
Length = 1143
Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 22/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + G F F+ ++ + L + L + + +L K
Sbjct: 993 RQERASQSGER-FAFVS------------LSDPSGEYEVLFPPEALRKCR-EVLEPGKAV 1038
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-LREIHKYFENRQTQ 130
I V + + E +EK M+ LR++L + + + + E +
Sbjct: 1039 AIKVRAKAR--DGEVRFFGDDAEPIEKAIENMVAGLRMHLSPSATEIDALRRRLEAAASP 1096
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ LI G EIE+ L Y + + L+ G+ + V
Sbjct: 1097 RG---GEVSLIAAL-GGGREIEMKLPGRYTLDAALRGALKTAPGVALLEDV 1143
>gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha
gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha
gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15]
gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
Length = 1143
Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 22/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + G F F+ ++ + L + L + + +L K
Sbjct: 993 RQERASQSGEK-FAFVS------------LSDPTGEYEVLYPPESLRKCR-DVLEPGKAV 1038
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-LREIHKYFENRQTQ 130
I V + + E +EK ++ LRV+L + + + + E Q Q
Sbjct: 1039 AIKVRAKAR--DGEVRFFGDDAEPIEKAVENVVAGLRVHLSPSAAEIDALKRRLEPAQAQ 1096
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
G++ + G EIE+ L Y + + L+ G+ + V
Sbjct: 1097 KG---GEVTFVAAI-GGGREIELRLPGRYTLDAALRGALKTAPGVALLEDV 1143
>gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
sp. BAL3]
gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
sp. BAL3]
Length = 1153
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 18/170 (10%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
++ + F F+ ++ F L +QL + + +L
Sbjct: 999 KQERASARTGEKFAFVT------------FSDPTGEFECLFPPEQLRKCR-EVLEPGASV 1045
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-LREIHKYFENRQTQ 130
++ V K S ++ + LR+++ R+ + E ++
Sbjct: 1046 MVRVRA--KASEGEVRFFGDDASQMDNLLDDANIGLRIHVSARTADAEALKARLERARSG 1103
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
K G+I L+ G+ E+E+ L Y + + L+ G+ + +
Sbjct: 1104 AIGKGGEISLVASLE-GRQEVEVKLPGRYRLDGALRGALKSAPGVLMLEE 1152
>gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H]
gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
Length = 1140
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 22/171 (12%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
+RK + G + ++ + L + LL +
Sbjct: 991 DRKERPTRTGKK-------------MAWVNLSDSGGGCEVTLFSETLTSCR-DLLVAGQA 1036
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
I+V+ E K+ I V LE + +RV+L++ + L ++ E Q
Sbjct: 1037 --ILVTAELKVDGDALRITAQNVMDLEVAAAAERSEIRVWLKEDASLPDLASLLEEVQ-- 1092
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKVVQV 180
G++ L + ++EI++ Y ++P +A L + G+ K +QV
Sbjct: 1093 --GGLGRVKL-LPSVEETQDVEISIPGHYRVTPRLAERLRTLRGVEKALQV 1140
>gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
17100]
gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
17100]
Length = 1151
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ +K GN F F ++ F ++ L + L K
Sbjct: 1006 RQDRKAKSGNR-FAFAG------------FSDPTGQFEAVIFSDTLNVAGDK-LEAGKNV 1051
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
++ V E + +R+ V++L++ ++ + + +R + E+ K+
Sbjct: 1052 LVHVEGEA--DGEAIKVRVQAVQALDEVLGKITKQVSITATERLQVAELVKHLGRE---- 1105
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKV 177
++ L+ + + +E L ++ I+ L+ + G+ +V
Sbjct: 1106 --GGIQVNLVVQIPEAQKAVEFKLGDNFSITARQLATLKTLPGVLQV 1150
>gi|218459887|ref|ZP_03499978.1| DNA polymerase III subunit alpha [Rhizobium etli Kim 5]
Length = 74
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYPI 160
+M +LRVY++D PL+ + + N G + I ++ +GK E+E+ L Y I
Sbjct: 1 QMQKALRVYIRDSGPLKMVAGHL------NAKGDGLVSFIVIKEEGKREVEVALPEKYRI 54
Query: 161 SPEIAFDLEHITGITKVV 178
+PEIA L G+ V
Sbjct: 55 TPEIAAALRAAPGVVDVE 72
>gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
15264]
gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
15264]
Length = 1162
Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 22/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + F F+ ++ F L +QL + + LL
Sbjct: 1010 RQERASAKNGEKFAFVT------------FSDPTGEFECLFPPEQLRKCR-DLLEVGSAL 1056
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL--QDRSPLREIHKYFENRQT 129
++ V K S L+ + LRV++ + P I
Sbjct: 1057 MVRVRA--KSSDGEVRFFGDDCSRLDALVDDSTVGLRVHVSARTTDP-AAIQARLARALA 1113
Query: 130 QNYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQ 179
Q K G+I LI G+ E+E+ L Y + + L+ G+ + +
Sbjct: 1114 Q--GKGGEITLIASL-DGRREVEMRLPGRYRLDGALRGALKSAPGVLMLEE 1161
>gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503]
gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503]
Length = 1152
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
++ ++ +F + LE LL + + V+ ED + V +L
Sbjct: 1013 VRLSDRSGDFEVTVFAELLEGAA-DLLEPGQLLFMGVTAED--QDGALRLTGESVRALST 1069
Query: 99 KSMEMLDS--LRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL- 155
E + V +Q + EI +N QG + LI IE+ +
Sbjct: 1070 MEAEGPGGRRMEVVVQRPEAIYEIKSCLQNL--GGAGGQGDLVLIIPDPALDCAIEVAVE 1127
Query: 156 DHYPISPEIAFDLEHITGITKVVQVIH 182
+S L+ I G+ +V +IH
Sbjct: 1128 GQMAVSGAAKSALKTIDGVAQV--IIH 1152
>gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
Length = 1142
Score = 70.8 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 21/170 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + F F + ++ + + + + L + + L +
Sbjct: 993 RQERASARTGEKFAF------------VNLSDPSGEYEVMFQPEALRKYR-EHLEPGQSI 1039
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
++ V K S + E + LR+ + SP F+ +
Sbjct: 1040 LLKVRC--KGSDGEVRMFGESAEPMAGALKTDDMGLRLTV---SPRGFDVDAFKMQLDAA 1094
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+ G+I L L E+E+ + Y + + L+ + G+ V
Sbjct: 1095 RGQGGEITL--LSEIDGHEVELKMPHRYRLDASLRGALKAMNGVLYCEDV 1142
>gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10]
Length = 1147
Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 6/139 (4%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
++ F L + +L + ++ +++ ++ S +E L+ K
Sbjct: 1012 LSDPTGEFEVFVNSDLLVSSR-DILDSGQAVMVNCRVDER--DEQISFFADKIEPLDTKI 1068
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYP 159
+ LR+ L L +H E + + + L + EIE+ L +
Sbjct: 1069 S--AERLRIRLDLPDALTGVHARLERANKRADASHDAVIDLLLPLRDGGEIEMRLPGRHS 1126
Query: 160 ISPEIAFDLEHITGITKVV 178
+ L+ + G+ V
Sbjct: 1127 ADAALQAALKGVKGVASVE 1145
>gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444]
gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444]
Length = 1140
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L ++ + + L++ LL+ K I V+ KL+ + + L LE
Sbjct: 998 LTISDPTGELEMMVFNEGLQQ-YGDLLQPGKAVAITVTA--KLNGEELRLNLDRAVELEA 1054
Query: 99 K-SMEMLDSLRVYLQ---DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEIT 154
+ SL V L D L + + E Q D + ++ L + + +
Sbjct: 1055 ARLSKPSGSLMVRLGPDADPEDLAGVIRRLE----QVSDGDRGVIIVELILRDGRIVTMR 1110
Query: 155 LDH-YPISPEIAFDLEHITGITKV 177
L Y I L+ + G+ KV
Sbjct: 1111 LPQTYTIGLRAQRALKEVPGVEKV 1134
>gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
Length = 1162
Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 51/141 (36%), Gaps = 5/141 (3%)
Query: 37 MKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESL 96
+ L ++ F S + L E ++ V + + + + +SL
Sbjct: 1012 LNLTLSDRSGQFQSSCFDEAAGRVLEALADEGGCALLSVELDLLEGEETPRVTVRGAQSL 1071
Query: 97 EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156
+ L ++ + E+ + E + +G++ ++ ++ I L
Sbjct: 1072 ADIAATASLQLLCRVEAPEAIDEMARLLE----KRGGARGRVIVVTRNPLTHDDVRIELG 1127
Query: 157 H-YPISPEIAFDLEHITGITK 176
+ + P+I L+ + GI++
Sbjct: 1128 RGFVLGPDIVARLDLVAGISE 1148
>gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
Length = 1150
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 63/170 (37%), Gaps = 18/170 (10%)
Query: 13 KGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYI 72
+ K F F+ ++ F +L + L E + ++ +
Sbjct: 997 QEKVSQRSGEKFAFVT------------LSDPSGEFEALVPPKVLREIR-DVIEPGASVL 1043
Query: 73 IVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD-SLRVYLQDRSPLREIHKYFENRQTQN 131
V+ + + + + + ++++ + E + L++ + + + L + K + +
Sbjct: 1044 --VNAKIEAQDEGLRLIIDGADTIDPFAAEHIGQGLKIRVGEPAALEPLRKRIDRANDRQ 1101
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
+G I LI S G E+ L + + P ++ + G+ +V +
Sbjct: 1102 GAVKGSIHLIVPLSDG-RLAELRLPGRHAVDPAARAAVKAVAGVLEVETL 1150
>gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
Length = 1133
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R+ + F F+ ++ + L + L + + L
Sbjct: 982 RQERAAAGSGEKFAFVT------------LSDPSGEYEVLFPPESLRRCRDQ-LEPGASI 1028
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRS-PLREIHKYFENRQTQ 130
++ V + K + L++++ + L + E +
Sbjct: 1029 VLKVRAKGKEG--EVRFFGDEAGPMATSIKTDDLGLKLHVSAQVIDLAVLRAQLEASKLP 1086
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLD-HYPISPEIAFDLEHITGITKVVQV 180
N GKI L G+ +IE L Y + + L+ + G+ V
Sbjct: 1087 NG---GKISL-LSDLAGQGQIEFDLPHRYSLDAHMRGRLKAMPGVLYFEDV 1133
>gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
Length = 1163
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 6/150 (4%)
Query: 30 CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89
A ++ ++ F + + L E + ++ V + + I
Sbjct: 1003 TRRGAQFVRADFSDSSGQFSAACFEDSLVESFKTWAADGTCVLLTVELDSPSPDEPPRIT 1062
Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149
+ L + + + + + E+ + G++ + +G
Sbjct: 1063 VRGARPLNTVAGSQRMLMTLDVASEDAIAELALALQ----LGEAGHGEVRVRLNLGEGM- 1117
Query: 150 EIEITLDH-YPISPEIAFDLEHITGITKVV 178
+ L H + + ++A L+ I GI V
Sbjct: 1118 VASMRLGHDFRLDGKLAEQLQAIPGIANVR 1147
>gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum
JL354]
Length = 1155
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 52/137 (37%), Gaps = 6/137 (4%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ F + ++ L + + +E ++ V + + + + L + +
Sbjct: 1010 SDSTGQFSAACFEEGLVPQFTKWAQESTCVLLTVELDSPSPDEPPRVTIRGARPLAEVAG 1069
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPI 160
L + + + L E+ + G++ + QG+ + + L H Y +
Sbjct: 1070 GQRMLLTLEVSSEAALGELALSLQP----GPPGHGEVQIALDLGQGERPV-MRLGHDYKV 1124
Query: 161 SPEIAFDLEHITGITKV 177
++A LE I GI+ +
Sbjct: 1125 DGKLADALERIEGISNI 1141
>gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
Length = 1157
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 6/138 (4%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
++ F + ++ + E + E+ ++ V + + + + L +
Sbjct: 1011 SDATGQFSAACFEEGMVERFLKWAEEQTCVLLQVELDSPSPDEPPRVTVRGGTPLAEVKG 1070
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YPI 160
L + + D + + ++ Q ++ L+ LR G++E + L + +
Sbjct: 1071 ATPMILTLDILDIGAIETLSAEL----SEAGKGQDEV-LVTLRIGGELEPAMRLGRDFAL 1125
Query: 161 SPEIAFDLEHITGITKVV 178
E+A L + G+ KV
Sbjct: 1126 DGELAERLASVPGLAKVQ 1143
>gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
Length = 1165
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 6/149 (4%)
Query: 30 CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89
A ++ Q ++ F + ++ L + ++ V + + +
Sbjct: 1007 TKRGAEFVRGQFSDSSGQFSAACFEESLVSSFQNWADSGECVLLTVELDSPNPGEPPRLT 1066
Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKI 149
+ L + L++ + L E+ E Q + + LI
Sbjct: 1067 VRGARPLSSVTGSTPMILKMDVTSLDGLAELK--LELTQDDKAPGEVLVRLIL---GPDE 1121
Query: 150 EIEITLD-HYPISPEIAFDLEHITGITKV 177
E + L ++ + E+A L GI V
Sbjct: 1122 EAHMRLGSNFVLDGELAERLAQAEGIENV 1150
>gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
Length = 1160
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + LE+ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALEKFQ-HLLEKDRILIVSGQVSFDDFSGGLKMTARDVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R + ++ + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFG-AAWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + +L + G +V
Sbjct: 1137 SPSDRLLNELRSLIGSEQVE 1156
>gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont]
Length = 1125
Score = 51.5 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 984 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1042
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1043 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFG-AAWRI 1101
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1102 SPSDRLLNDLRSLVGAEQVE 1121
>gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
Length = 1145
Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 17/167 (10%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
R K G F ++ ++ + + L E +
Sbjct: 990 RVEKPSMSGGGKFAYIT------------LSDPSGEYELFVAPETLAETR-DYFEVGSRV 1036
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
+ V + + + L+K ++ L V + D + + ++ + +
Sbjct: 1037 NVHV--KVRRKDDELRFSVDGARPLDKAALGAPAKLCVRVGDLASMEQLAHVAVQLREVS 1094
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
G I + + I + LD YP+ L+ + G+ +V
Sbjct: 1095 SQTIGIIQVEIPLED-QRLITLELDGHYPMDYAAMSALKSVVGVERV 1140
>gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b]
gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b]
Length = 1160
Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFG-AAWRI 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLVGSEQVE 1156
>gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103]
gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103]
Length = 1160
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFG-AAWRI 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
Length = 1160
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFG-AAWRI 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
Length = 1160
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFG-AAWRI 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894]
gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894]
Length = 1160
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + LE+ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALEKYQ-HLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPNDRLLNDLRGLIGSEQVE 1156
>gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
Length = 1160
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + LE+ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALEKYQ-HLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPNDRLLNDLRGLIGSEQVE 1156
>gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
Length = 1160
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + ++ + I
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVNLYYQRADARAKLRFG-AAWRI 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044]
gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22]
gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22]
gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638]
gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + LE+ + LL + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTEALEKYQ-HLLENDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC
35316]
gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC
35316]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-AAWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
Length = 1150
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1009 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1067
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1068 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1126
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1127 SPSDRLLNDLRGLIGSEQVE 1146
>gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
Length = 1144
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
Length = 1144
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354]
gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354]
Length = 1162
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1021 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1079
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1080 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1138
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1139 SPSDRLLNDLRGLIGSEQVE 1158
>gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088]
gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088]
Length = 1162
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1021 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1079
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1080 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1138
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1139 SPSDRLLNDLRGLIGSEQVE 1158
>gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39]
gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5]
gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739]
gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
W3110]
gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A]
gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11]
gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1]
gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989]
gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9]
gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
12009]
gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185]
gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736]
gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W]
gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736]
gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591]
gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha
gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli]
gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli]
gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr.
W3110]
gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A]
gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11]
gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989]
gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1]
gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
12009]
gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1]
gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185]
gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W]
gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W]
gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11]
gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482]
gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120]
gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007]
gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167]
gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736]
gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591]
gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469]
gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469]
gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509]
gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046]
gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEAHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS]
gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718]
gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS]
gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
core enzyme and DNA polymerase III, holoenzyme
[Escherichia coli BL21(DE3)]
gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407]
gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489]
gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
Length = 1144
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605]
gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
Length = 1162
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1021 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1079
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1080 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1138
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1139 SPSDRLLNDLRGLIGSEQVE 1158
>gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026]
gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026]
gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a]
gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a]
gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str.
E2348/69]
gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536]
gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197]
gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89]
gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1]
gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88]
gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299]
gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89]
gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1]
gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88]
gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034]
gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
857C]
gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252]
gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263]
gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299]
Length = 1160
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:--]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
11128]
gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
11128]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073]
gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha
gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073]
gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972]
gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863]
gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301]
gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301]
gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T]
gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
11368]
gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
11368]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
Length = 1140
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 999 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1057
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1058 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1116
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1117 SPSDRLLNDLRGLIGSEQVE 1136
>gi|322648192|gb|EFY44659.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
Length = 826
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 685 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 743
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 744 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 802
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 803 SPSDRLLNDLRGLIGSEQVE 822
>gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
Length = 1140
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 999 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1057
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1058 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1116
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1117 SPSDRLLNDLRGLIGSEQVE 1136
>gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPGDRLLNDLRGLIGSEQVE 1156
>gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401]
gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401]
Length = 1127
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 986 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1044
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1045 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1103
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1104 SPSDRLLNDLRGLIGSEQVE 1123
>gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha
gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEAHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
Length = 1144
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 1160
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 1144
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 1144
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 1160
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
Length = 1160
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-AAWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
Length = 1160
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRTDARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
Length = 1160
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ ++ + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARVRLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|213582269|ref|ZP_03364095.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 562
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 421 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 479
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 480 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 538
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 539 SPSDRLLNDLRGLIGSEQVE 558
>gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
Length = 1144
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94]
gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94]
Length = 1160
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
CB9615]
gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli]
gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
CB9615]
gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
5905]
Length = 1160
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-HLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
G5101]
Length = 1160
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-HLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 1160
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SPE--IAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDHLLNDLRGLIGSEQVE 1156
>gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933]
gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
Sakai]
gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4113]
gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4401]
gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4501]
gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4486]
gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4196]
gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4076]
gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC869]
gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC508]
gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
EC4024]
gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4115]
gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
TW14588]
gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
TW14359]
gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha
gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EDL933]
gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
Sakai]
gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4196]
gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4113]
gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4076]
gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4401]
gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4486]
gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4501]
gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC869]
gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC508]
gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
EC4115]
gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli]
gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli]
gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli]
gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli]
gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
TW14588]
gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
TW14359]
gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
493-89]
gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
2687]
gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
LSU-61]
gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
Length = 1160
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-HLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
DSM 12444]
gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
DSM 12444]
Length = 1215
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 60/168 (35%), Gaps = 19/168 (11%)
Query: 11 NRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP 70
N + +K G DF+ + ++ F + ++ L E + RE
Sbjct: 1052 NVQKRKTKKGK-DFVMAD------------FSDSSGLFSASCFEESLVEPFQQWAREGTC 1098
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ V + + + + L + L++ + + ++ +
Sbjct: 1099 VLLNVELDRPNPDEPPRVTVRGARPLASVTSASRMVLKLDVSRTEAISDLAMLL----PR 1154
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDH-YPISPEIAFDLEHITGITKV 177
D +G++ L LR+ G E + L + + + ++ L I G+ V
Sbjct: 1155 RPDGKGEV-LARLRTGGPKEPLVRLGNDFILDSDLIERLIPIEGLANV 1201
>gi|330001696|ref|ZP_08304090.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
gi|328537572|gb|EGF63793.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
Length = 379
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 238 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 296
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 297 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 355
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 356 SPSDRLLNDLRGLIGSEQVE 375
>gi|301646509|ref|ZP_07246383.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
146-1]
gi|301075262|gb|EFK90068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
146-1]
Length = 382
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 241 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 299
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 300 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 358
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 359 SPSDRLLNDLRGLIGSEQVE 378
>gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
Length = 1160
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTEALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|297517314|ref|ZP_06935700.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
Length = 376
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 235 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 293
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 294 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 352
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 353 SPSDRLLNDLRGLIGSEQVE 372
>gi|324017849|gb|EGB87068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
117-3]
Length = 358
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 217 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 275
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 276 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 334
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 335 SPSDRLLNDLRGLIGSEQVE 354
>gi|300900774|ref|ZP_07118920.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
198-1]
gi|300355759|gb|EFJ71629.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
198-1]
Length = 375
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 234 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 292
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 293 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 351
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 352 SPSDRLLNDLRGLIGSEQVE 371
>gi|301025930|ref|ZP_07189416.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
69-1]
gi|300395785|gb|EFJ79323.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
69-1]
Length = 376
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 235 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 293
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 294 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 352
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 353 SPSDRLLNDLRGLIGSEQVE 372
>gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
Length = 1160
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895]
gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895]
Length = 1144
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|301330014|ref|ZP_07222701.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
78-1]
gi|300843968|gb|EFK71728.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
78-1]
gi|324008215|gb|EGB77434.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
57-2]
gi|324014131|gb|EGB83350.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
60-1]
Length = 374
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 233 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 291
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 292 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 350
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 351 SPSDRLLNDLRGLIGSEQVE 370
>gi|300920130|ref|ZP_07136583.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
115-1]
gi|300956069|ref|ZP_07168393.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
175-1]
gi|300317063|gb|EFJ66847.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
175-1]
gi|300412864|gb|EFJ96174.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
115-1]
Length = 374
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 233 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 291
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 292 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 350
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 351 SPSDRLLNDLRGLIGSEQVE 370
>gi|300990431|ref|ZP_07179199.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
200-1]
gi|300305731|gb|EFJ60251.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
200-1]
Length = 375
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 234 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 292
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 293 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 351
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 352 SPSDRLLNDLRGLIGSEQVE 371
>gi|300949782|ref|ZP_07163757.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
116-1]
gi|300450847|gb|EFK14467.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
116-1]
Length = 373
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 232 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 290
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 291 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 349
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 350 SPSDRLLNDLRGLIGSEQVE 369
>gi|300938593|ref|ZP_07153325.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
21-1]
gi|301028679|ref|ZP_07191899.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
196-1]
gi|299878278|gb|EFI86489.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
196-1]
gi|300456439|gb|EFK19932.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
21-1]
gi|315285284|gb|EFU44729.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
110-3]
Length = 372
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 231 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 289
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 290 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 348
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 349 SPSDRLLNDLRGLIGSEQVE 368
>gi|300932142|ref|ZP_07147425.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
187-1]
gi|300460079|gb|EFK23572.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
187-1]
Length = 378
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 237 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 295
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 296 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 354
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 355 SPSDRLLNDLRGLIGSEQVE 374
>gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
Length = 1144
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1003 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAR 1061
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1120
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1121 SPSDRLLNDLRGLIGSEQVE 1140
>gi|315300656|gb|EFU59883.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
16-3]
Length = 374
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 233 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 291
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 292 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 350
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 351 SPSDRLLNDLRGLIGSEQVE 370
>gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 1160
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAGLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 1160
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAGLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRGLIGSEQVE 1156
>gi|213609969|ref|ZP_03369795.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 338
Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 197 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 255
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 256 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 314
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 315 SPSDRLLNDLRGLIGSEQVE 334
>gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
Length = 1160
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +L + + I+ + + +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKFQ-HMLEKDRILIVSGQVSFDDFNGGLKMMARDMMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + L + R + ++ + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQREDARAKLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163]
Length = 1160
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +L + + I+ + + +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKFQ-HMLEKDRILIVSGQVSFDDFNGGLKMMARDMMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + L + R + ++ + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQREDARAKLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|213419561|ref|ZP_03352627.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 148
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 7 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 65
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 66 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 124
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 125 SPSDRLLNDLRGLIGSEQVE 144
>gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158]
Length = 1160
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +L + + I+ + + +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKFQ-HMLEKDRILIVSGQVSFDDFNGGLKMMARDMMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + L + R + ++ + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQREDARAKLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430]
gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946]
gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946]
gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430]
Length = 1160
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +L + + I+ + + +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKFQ-HMLEKDRILIVSGQVSFDDFNGGLKMMARDMMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + L + R + ++ + +
Sbjct: 1078 EKYARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQREDARAKLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
Length = 1160
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 42/140 (30%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +L + + I+ + + +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKFQ-HMLEKDRILIVSGQVSFDDFNGGLKMMARDMIDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + L + R + + + +
Sbjct: 1078 EKYARGLAISLTDRQIDGQLLNRLRQSLEPYRSGTIPVHLYYQREDARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
SP + DL + G +V
Sbjct: 1137 SPSDRLLNDLRSLIGSEQVE 1156
>gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
Length = 1160
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 44/140 (31%), Gaps = 4/140 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ L + L DR ++ + + L + R+ + + + +
Sbjct: 1078 EKYASGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFG-ATWRV 1136
Query: 161 SP--EIAFDLEHITGITKVV 178
P + DL + G +V
Sbjct: 1137 YPSDRLLNDLRGLIGSEQVE 1156
>gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
HTCC2080]
gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
HTCC2080]
Length = 1153
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 53/142 (37%), Gaps = 4/142 (2%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L+ + S + E + LL + + ++ + S+R + SLE+
Sbjct: 1009 LKLDDNTGQIESTVYAEAYTEHR-ELLVKDRIVLLSGRVQSDEYSGGLSMRAREIRSLEQ 1067
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY 158
+ + +R+ + D R++ + + + + + + + + G + + D +
Sbjct: 1068 ARLSRVSEIRLEVFDGGLDRQLRQLIKEVLLTSGGGECPVTVDYFQPLGSARVALG-DQW 1126
Query: 159 PISP--EIAFDLEHITGITKVV 178
++P ++ L G V
Sbjct: 1127 RVNPSDDLLERLRGAVGGEHVE 1148
>gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
Length = 1159
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 6/126 (4%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + R L + + +R V +L++
Sbjct: 1018 LDDRSGRAEIVLFNDDFTTYRDR-LEPDTLLVAEGTVALDDYAGGIRMRARAVYTLDEAR 1076
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-HYP 159
+ +L + L+ E + ++ D Q ++ L + R E E++L +
Sbjct: 1077 AQWARALHLCLEGVRA--EQVENLRGLMQEHRDGQCRVHLCYRRDGL--EAELSLPEGWA 1132
Query: 160 ISPEIA 165
I P+
Sbjct: 1133 IRPDER 1138
>gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
multocida str. Pm70]
gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha
gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70]
Length = 1159
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 49/155 (31%), Gaps = 6/155 (3%)
Query: 10 NNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKK 69
N+R G + + L++ +L +K
Sbjct: 986 NSRGQMSTVSGLLVSSRFAVTKKGNRLGIATLDDRSGRLDITLFGEALDKYADKL---QK 1042
Query: 70 PYIIVVSQEDKLS--LQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENR 127
+I+VS + + + + SL++ SL + L + + + +
Sbjct: 1043 DTVIIVSGQVSFDEFSGGLKMSVRELMSLDEARSRYAKSLAICLSEENMKPTFIRELKAL 1102
Query: 128 QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
T I + + + G+ +++ + + ++P
Sbjct: 1103 LTPYSGGTLPIYVYYASTAGQCRVKMGV-QWSVNP 1136
>gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
Length = 1160
Score = 43.1 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 4/134 (2%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L + + LE + LL++ + ++ + V +E
Sbjct: 1017 LTLDDRSGRLDITLFSEALERYE-SLLQKDRILVVTGQISFDEYAGGIKMSAREVLDIED 1075
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY 158
LRV + + T + + + + R+ + ++ + + +
Sbjct: 1076 ARGRHARGLRVKVTQSETADRFMQNLAGILTPHRAGICPVHICYRRTGVQGQLTLGTE-W 1134
Query: 159 PISP--EIAFDLEH 170
++P ++ +L
Sbjct: 1135 RVTPTDQLLNELRT 1148
>gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 1166
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 27 LEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRD 86
+ A + Q ++E ++LE + LL++ I+ E ++
Sbjct: 1015 YKKTKSGATMVVFQISDETGQMDVRAFPEKLENK--ELLQDDNIVILEGILEVDEEQEKI 1072
Query: 87 SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
S+ +ES+E + + +++ L + + +N T+N ++ ++ +
Sbjct: 1073 SMTANNIESIESLT-REIKGIKIKLSIEKAANGVLEKIKNVLTKN-KGDKEVIVVLYNGR 1130
Query: 147 GKIEIEITL 155
EI L
Sbjct: 1131 KPY-CEIAL 1138
>gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
proteobacterium NOR51-B]
gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
proteobacterium NOR51-B]
Length = 1142
Score = 42.7 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 41/120 (34%), Gaps = 2/120 (1%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + E + LL + + ++ + ++R+ V SLE+
Sbjct: 1002 DGSGQIEATVFADIYSENR-ELLEKDRIVLLEGRLQTDEFSGGLNLRVKSVRSLEQAREG 1060
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
+ ++ V + + + + + I + + + G+ I + + ++P
Sbjct: 1061 RITAMLVRMDRAQLDSGLRQSLRELLLKYRGGECPICIDYQQPLGQARIRLG-SQWQVTP 1119
>gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
Length = 1160
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 5/139 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + + L ++ + D S S+R + SL++
Sbjct: 1020 LDDRSARIEATVYAEAFQASREALTKDTLIVMEGGVAHDDYSG-GLSMRANRILSLDEAR 1078
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
LR+ L +S L + + + + + R I + + Y I
Sbjct: 1079 GAYASELRITLNGKSDL-VLVAQLAQVLNPSVGGACPVVIDYQRHDASSVIVLG-EAYRI 1136
Query: 161 SP--EIAFDLEHITGITKV 177
P E+ L + G V
Sbjct: 1137 HPSDELLAALGQLPGTVSV 1155
>gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
Length = 1199
Score = 42.3 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ----DRSPLR 118
++ + + + ++ + + L++ +R+ L D +
Sbjct: 1076 ERIQPDAVVLAKAKVDRRGGGDEINLIIDELTPLDELDSRYTHGIRIRLDEAEHDEKTVS 1135
Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI--SPEIAFDLEHITG 173
+ + + Y + L +G+ + D + + +P++ L+ + G
Sbjct: 1136 NVREIV-----RGYPGNKDLLLAMQLCEGET-VHFKADKFRVDITPQLRERLDDLLG 1186
>gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
Length = 1162
Score = 42.3 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 14/165 (8%), Positives = 47/165 (28%), Gaps = 7/165 (4%)
Query: 12 RKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPY 71
RK ++ G + + + + LL + +
Sbjct: 995 RKEQQATVGGLVINIRTKPTQTGRIGFVTLDDRSGRIEVGLFGEDFNRYQ-HLLVKDRLL 1053
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQN 131
++ +R V L++ + + L + + P+ + ++ +
Sbjct: 1054 VVQGQAGVDEFNGGVRLRARQVMDLDEALSQCVKGLDLRVL-GRPVNGLVDELKDALAPS 1112
Query: 132 YDKQGKIGLIFLRSQGKIEIEITLDH-YPI--SPEIAFDLEHITG 173
+ + + + + + L + + S ++ L + G
Sbjct: 1113 REGPCPVYIHYRDD--RFQACFELGEDWRVRPSGDLIARLRGLLG 1155
>gi|327542106|gb|EGF28600.1| DNA polymerase III, alpha subunit [Rhodopirellula baltica WH47]
Length = 1045
Score = 41.9 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ----DRSPLR 118
++ + + + ++ + + L++ +R+ L D +
Sbjct: 922 ERIQPDAVVLAKAKVDRRGGGDEINLIIDELTPLDELDSRYTHGIRIRLDEAEHDEKTVS 981
Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI--SPEIAFDLEHITG 173
+ + + Y + L +G+ + D + + +P++ L+ + G
Sbjct: 982 NVREIV-----RGYPGNKDLLLAMQLCEGET-VHFKADKFRVDITPQLRERLDDLLG 1032
>gi|3328118|gb|AAC27754.1| putative transporter AmrB [Burkholderia pseudomallei 1026b]
Length = 1043
Score = 41.9 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRISGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 1158
Score = 41.5 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + + + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGI-KWRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|182418219|ref|ZP_02949519.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
gi|237666115|ref|ZP_04526102.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378037|gb|EDT75577.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
gi|237658205|gb|EEP55758.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 496
Score = 41.5 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 9/124 (7%)
Query: 30 CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89
++ I L + + + + LE K + + +I+ + ++ +
Sbjct: 350 TRNNTIMAFLTLEDLTGSIEVIVFPKTLENFKSLCITD--SLVIIKGRISLKEDEQPKLL 407
Query: 90 LLWVESLEKKSMEMLDSLRVYLQDRSPLRE--IHKYFENRQTQNYDKQGKIGLIFLRSQG 147
+E LEK + +VYL+ + + ++ + + I L+ +R +
Sbjct: 408 CESIEPLEKINSS-----KVYLRADNEIEAKKLNMNLKEILKDEHKGDTPIYLVAMRERQ 462
Query: 148 KIEI 151
K +
Sbjct: 463 KFRV 466
>gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 1158
Score = 41.5 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEKKS 100
+ + LE+ +L +K +IVVS + Q + + + ++++
Sbjct: 1019 DRSGRLDLTLFGEALEKFGEKL---QKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEAR 1075
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
SL + L + K F++ + + + QG+ +++ + + +
Sbjct: 1076 ARYAKSLAICLSQEQITPQFIKQFKSILQPYSGNSLPVHIYYQSPQGRALVKMGV-QWSV 1134
Query: 161 SP--EIAFDLEHITGITKVV 178
+P E+ +L + G + V
Sbjct: 1135 NPTDELLTELAALFGESAVE 1154
>gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 1158
Score = 41.5 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEKKS 100
+ + LE+ +L +K +IVVS + Q + + + ++++
Sbjct: 1019 DRSGRLDLTLFGEALEKFGEKL---QKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEAR 1075
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
SL + L + K F++ + + + QG+ +++ + + +
Sbjct: 1076 ARYAKSLAICLSQEQITPQFIKQFKSILQPYSGNSLPVHIYYQSPQGRALVKMGV-QWSV 1134
Query: 161 SP--EIAFDLEHITGITKVV 178
+P E+ +L + G + V
Sbjct: 1135 NPTDELLTELAALFGESAVE 1154
>gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 1201
Score = 41.1 bits (95), Expect = 0.067, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1062 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1120
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1121 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1179
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1180 KDEMLDQLKALLGENAVE 1197
>gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
L20]
gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 1158
Score = 41.1 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 1158
Score = 41.1 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 1158
Score = 41.1 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 1158
Score = 40.8 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 1158
Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 1158
Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 1158
Score = 40.8 bits (94), Expect = 0.080, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + ++P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGIE-WRVTP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKALLGENAVE 1154
>gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
Length = 1212
Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIV----------VSQEDKLSLQRDSIRL 90
+ ++Q+E LL +P +I ++E + + + ++ L
Sbjct: 1063 LEDTTGRVEVKVREKQIE-SYADLLNRGEPVLISGKISFPMVDEGAEEAEAAPREPTLLL 1121
Query: 91 LWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIE 150
V+ L + S+ + L+ RS RE + L+ G
Sbjct: 1122 DEVQPLADAILAQTRSVAITLKSRSARREHIDRLGALLRA-SPGVCPVQLVIQLDDGAEA 1180
Query: 151 IEITLDH-YPISPE--IAFDLEHITGITKVVQV 180
+ ++L + P + LE + G KV ++
Sbjct: 1181 V-LSLGRDLRVEPNDAMLGRLEKLFG-EKVAEL 1211
>gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2]
gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2]
Length = 1184
Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
++ + + + L +E LL + P I+ E + + + ++K
Sbjct: 1025 LEDKKGSVEVVIFPE-LYQEVHYLLNDDTPVIL--QAEVQKRESNVKLLAEQIVPIDKAE 1081
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI 151
E S+ + + + + + + + + L G +
Sbjct: 1082 AEWTASIVITMAAKGADISVLERLKGLLH-RFAGTCSVFLEITVEDGSSVV 1131
>gi|134282398|ref|ZP_01769103.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 305]
gi|134246436|gb|EBA46525.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 305]
Length = 1043
Score = 40.4 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|53719416|ref|YP_108402.1| multidrug efflux protein [Burkholderia pseudomallei K96243]
gi|76811441|ref|YP_333453.1| multidrug efflux protein [Burkholderia pseudomallei 1710b]
gi|126438721|ref|YP_001058925.1| multidrug efflux protein [Burkholderia pseudomallei 668]
gi|126454286|ref|YP_001066169.1| multidrug efflux protein [Burkholderia pseudomallei 1106a]
gi|167815873|ref|ZP_02447553.1| multidrug efflux protein [Burkholderia pseudomallei 91]
gi|167824245|ref|ZP_02455716.1| multidrug efflux protein [Burkholderia pseudomallei 9]
gi|167845791|ref|ZP_02471299.1| multidrug efflux protein [Burkholderia pseudomallei B7210]
gi|167894362|ref|ZP_02481764.1| multidrug efflux protein [Burkholderia pseudomallei 7894]
gi|167902763|ref|ZP_02489968.1| multidrug efflux protein [Burkholderia pseudomallei NCTC 13177]
gi|167911008|ref|ZP_02498099.1| multidrug efflux protein [Burkholderia pseudomallei 112]
gi|167919023|ref|ZP_02506114.1| multidrug efflux protein [Burkholderia pseudomallei BCC215]
gi|217421591|ref|ZP_03453095.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 576]
gi|226196300|ref|ZP_03791882.1| multidrug efflux pump AmrB [Burkholderia pseudomallei Pakistan 9]
gi|237812182|ref|YP_002896633.1| acriflavine resistance protein B [Burkholderia pseudomallei
MSHR346]
gi|242317789|ref|ZP_04816805.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106b]
gi|254197728|ref|ZP_04904150.1| multidrug efflux pump AmrB [Burkholderia pseudomallei S13]
gi|254259937|ref|ZP_04950991.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1710a]
gi|254297699|ref|ZP_04965152.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 406e]
gi|52209830|emb|CAH35802.1| multidrug efflux system transporter protein AmrB [Burkholderia
pseudomallei K96243]
gi|76580894|gb|ABA50369.1| multidrug efflux system transporter protein AmrB [Burkholderia
pseudomallei 1710b]
gi|126218214|gb|ABN81720.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 668]
gi|126227928|gb|ABN91468.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106a]
gi|157807171|gb|EDO84341.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 406e]
gi|169654469|gb|EDS87162.1| multidrug efflux pump AmrB [Burkholderia pseudomallei S13]
gi|217395333|gb|EEC35351.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 576]
gi|225931517|gb|EEH27522.1| multidrug efflux pump AmrB [Burkholderia pseudomallei Pakistan 9]
gi|237506460|gb|ACQ98778.1| acriflavine resistance protein B [Burkholderia pseudomallei
MSHR346]
gi|242141028|gb|EES27430.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106b]
gi|254218626|gb|EET08010.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1710a]
Length = 1043
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|121600140|ref|YP_992987.1| multidrug efflux protein [Burkholderia mallei SAVP1]
gi|254177686|ref|ZP_04884341.1| AcrB protein [Burkholderia mallei ATCC 10399]
gi|121228950|gb|ABM51468.1| acriflavine resistance protein B [Burkholderia mallei SAVP1]
gi|160698725|gb|EDP88695.1| AcrB protein [Burkholderia mallei ATCC 10399]
Length = 1041
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|167738647|ref|ZP_02411421.1| multidrug efflux protein [Burkholderia pseudomallei 14]
Length = 961
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|325526471|gb|EGD04047.1| multidrug efflux protein [Burkholderia sp. TJI49]
Length = 386
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S+ ++ L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGIQVEKAADNIQLVVSLTSEDGRMTDVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVDGVGKVQ 175
>gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
Length = 1164
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L +++ + + + + LL+ +P ++V + + + I V SLE
Sbjct: 1019 LAIEDKEGVLEVVAFSETFMQSR-DLLQTDEPLVVV--GKVQHDEKGSKIIANHVLSLED 1075
Query: 99 KSMEMLDSLRVYL----QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEIT 154
++ ++ +R+ L DR L + + +I L + +
Sbjct: 1076 AQVQTVEEVRIRLMADALDRDGLTRLRHLLISH-----PGGCRILLHLQVADTGEAVIAV 1130
Query: 155 LDHYPISP 162
D +SP
Sbjct: 1131 SDKLTVSP 1138
>gi|30249101|ref|NP_841171.1| multidrug efflux protein [Nitrosomonas europaea ATCC 19718]
gi|30138718|emb|CAD85023.1| RND multidrug efflux transporter [Nitrosomonas europaea ATCC 19718]
Length = 1033
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 53 EQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ 112
+E E P ++ S ++ + ++E+ + L++
Sbjct: 61 VTAIIEREMN-----GAPRLMYTSATSSPGSANINLTFRQGTDPDLAAVEVQNRLKMV-- 113
Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAFDLEHI 171
+ L E+ + ++ D I L+ + S EI L S I L +
Sbjct: 114 -EARLPEVVRRNGIFIEKSAD---NIQLVVSITSNDNRLTEIELGELA-SANILQALRRV 168
Query: 172 TGITKVV 178
G+ KV
Sbjct: 169 EGVGKVQ 175
>gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
ATCC 25976]
gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
ATCC 25976]
Length = 1158
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
+ + LE LL + + I S + + + + +L++
Sbjct: 1019 DRSGKLDMTLFSEALE-TYGHLLEKDRIVIATGSVQFDDFSGGLKMSVREIATLDEARSR 1077
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
SL + + + K N + + + +G+ + ++ + I+P
Sbjct: 1078 YAKSLALAVSQEQLTPQFVKELREIIEPNKEGTLPLHFYYQSPEGRALLRSGVE-WRITP 1136
Query: 163 --EIAFDLEHITGITKVV 178
E+ L+ + G V
Sbjct: 1137 KDEMLDQLKTLLGENAVE 1154
>gi|221197905|ref|ZP_03570951.1| acriflavine resistance protein B [Burkholderia multivorans CGD2M]
gi|221204537|ref|ZP_03577554.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia multivorans CGD2]
gi|221175394|gb|EEE07824.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia multivorans CGD2]
gi|221181837|gb|EEE14238.1| acriflavine resistance protein B [Burkholderia multivorans CGD2M]
Length = 1045
Score = 39.6 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ +V
Sbjct: 164 ALRRVDGVGRVQ 175
>gi|221212960|ref|ZP_03585936.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
gi|221167173|gb|EED99643.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
Length = 1045
Score = 39.6 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ +V
Sbjct: 164 ALRRVDGVGRVQ 175
>gi|161524788|ref|YP_001579800.1| multidrug efflux protein [Burkholderia multivorans ATCC 17616]
gi|189350458|ref|YP_001946086.1| multidrug efflux protein [Burkholderia multivorans ATCC 17616]
gi|160342217|gb|ABX15303.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia multivorans ATCC 17616]
gi|189334480|dbj|BAG43550.1| HAE1 familyhydrophobic/amphiphilic exporter-1 [Burkholderia
multivorans ATCC 17616]
Length = 1045
Score = 39.6 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ +V
Sbjct: 164 ALRRVDGVGRVQ 175
>gi|296446768|ref|ZP_06888707.1| TonB system transport protein ExbD [Methylosinus trichosporium
OB3b]
gi|296255771|gb|EFH02859.1| TonB system transport protein ExbD [Methylosinus trichosporium
OB3b]
Length = 143
Score = 39.6 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 66 REKKPYIIVVSQEDKLS-LQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYF 124
+ KP + V + L+ + R V SL+ + RV+L+ S + +
Sbjct: 60 KPDKPIYLTVQADLALALGETPVKRNDLVSSLD-ALVNGDKGKRVFLRADSAVPY-GELM 117
Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKI 149
+ K+ L+ L + G
Sbjct: 118 AILERLRAGGYLKVSLVALDAGGAQ 142
>gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
11109]
gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
11109]
Length = 1150
Score = 39.2 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 16/123 (13%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYII--VVSQEDKLSLQRDSIRLLWVESLEK 98
++ + + + L P ++ VSQE+K + + L+
Sbjct: 1013 LEDQVGSVEVVVFSDLYQRVATLLQSPLIPLLVRGTVSQEEK----GPKLIAQDIRPLQT 1068
Query: 99 KSMEMLDSLRVYLQ----DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEIT 154
++ ++ +L + L DR L +H+ + L F+ Q ++ +
Sbjct: 1069 EAEKIPPALHLRLHTTGLDRDLLDRLHEILQRH-----RGPIPAFLHFISPQAPEQV-LA 1122
Query: 155 LDH 157
L
Sbjct: 1123 LPQ 1125
>gi|124385126|ref|YP_001026318.1| multidrug resistance protein mdtF [Burkholderia mallei NCTC 10229]
gi|126448477|ref|YP_001080407.1| multidrug resistance protein MdtF [Burkholderia mallei NCTC 10247]
gi|254358528|ref|ZP_04974801.1| multidrug efflux system transporter protein AmrB [Burkholderia
mallei 2002721280]
gi|124293146|gb|ABN02415.1| multidrug resistance protein mdtF [Burkholderia mallei NCTC 10229]
gi|126241347|gb|ABO04440.1| multidrug resistance protein MdtF [Burkholderia mallei NCTC 10247]
gi|148027655|gb|EDK85676.1| multidrug efflux system transporter protein AmrB [Burkholderia
mallei 2002721280]
Length = 320
Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|282890558|ref|ZP_06299081.1| hypothetical protein pah_c022o150 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499555|gb|EFB41851.1| hypothetical protein pah_c022o150 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 227
Score = 38.8 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 25/170 (14%)
Query: 30 CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEK-PRLLREKKP--YIIVVSQEDKLSLQRD 86
C+ A+ + QE S + L E+ LL+ + I V D++ Q+
Sbjct: 36 CFIEALGKRCQEGLRIQALASSERSATLAREQKIPLLQTDQVTYLDITVDGADQIDPQKR 95
Query: 87 SIRLLWVESL-EKKSMEMLDSLRVYLQDRSPLRE------------------IHKYFENR 127
I+ L EK + + V + + + I K
Sbjct: 96 MIKGGGGALLREKILASISKEMVVIVDSSKVVEQFGSFPLPVEMVTFAYQATIKKLNALG 155
Query: 128 QTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPE-IAFDLEHITGITK 176
T ++G I + G +I+L ++PE + I G+ +
Sbjct: 156 YTGKLREKGGIPYV--SDNGNYIFDISLPKPCLTPEKENQQIRAIPGVVE 203
>gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327]
gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327]
Length = 1190
Score = 38.5 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ E+ + +L+ + ++ E + + + V L+K
Sbjct: 1049 LEDFTGKADFTVFASVYEQYR-HMLQPDEAVMLSAEAEARDGS--LKLLVREVAPLKKVR 1105
Query: 101 MEMLD--SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEI 153
++ LR+ D S L ++ + + + + + + G IE+
Sbjct: 1106 SALIKKVMLRIDADDPSQLEKLKEV--RELFEKHKGETPVDFELRATVGAK-IEM 1157
>gi|302674571|ref|XP_003026970.1| hypothetical protein SCHCODRAFT_61730 [Schizophyllum commune H4-8]
gi|300100655|gb|EFI92067.1| hypothetical protein SCHCODRAFT_61730 [Schizophyllum commune H4-8]
Length = 1381
Score = 38.5 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 28/156 (17%)
Query: 13 KGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYI 72
+ P G HD L D A LQE E N + + L+ +++
Sbjct: 1212 RENLDPFGEHDDATLNDALRAAGLFALQEHESSGNARASNIKIDLDT---KIVSGGSNLS 1268
Query: 73 IV---VSQEDKLSLQRDSIRLLWVESLEKKSME--------MLDSLRVYLQDRSPLREIH 121
+ + + ++ + + L++ + + +SLR L + L I
Sbjct: 1269 VGQRQIIALARALVRGSKLLI-----LDEATSAIDYRTDSIIQESLRARLGNNVSLIVIA 1323
Query: 122 KYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH 157
+ + + +E
Sbjct: 1324 HRLQTVMDAD---------KIMVLDTGKIVEFDRPR 1350
>gi|257139189|ref|ZP_05587451.1| multidrug efflux protein [Burkholderia thailandensis E264]
Length = 878
Score = 38.5 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L+
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|167581941|ref|ZP_02374815.1| multidrug efflux protein [Burkholderia thailandensis TXDOH]
Length = 1043
Score = 38.5 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L+
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|83720423|ref|YP_442965.1| multidrug efflux protein [Burkholderia thailandensis E264]
gi|167620103|ref|ZP_02388734.1| multidrug efflux protein [Burkholderia thailandensis Bt4]
gi|83654248|gb|ABC38311.1| RND multidrug efflux transporter PA2018 [Burkholderia thailandensis
E264]
Length = 1043
Score = 38.5 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L+
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|225850456|ref|YP_002730690.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
gi|225645313|gb|ACO03499.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
Length = 1574
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)
Query: 8 KNNNRKGKKKPDGNHDFLFLED-----CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKP 62
K N+ +K D + D + L +E +++E+
Sbjct: 1399 KINSLAERKTGDKVRIAGVISDIKKKKTRSGSTMAILTVQDETGILDVRVFTEKMEDT-- 1456
Query: 63 RLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHK 122
L E + II + E +R S+ L VE +E + + +++ L L +
Sbjct: 1457 SFLEEDRIVIIEGTVEISEEQERISMNALSVEPIEN-INKQVRTVKFRLPKEKALNGVAL 1515
Query: 123 YFENRQTQNYDKQGKIGLIFLRSQG 147
+ Y ++ +
Sbjct: 1516 KIR-EICEKYRGDKEVIIEVFEEGK 1539
>gi|167719661|ref|ZP_02402897.1| multidrug efflux protein [Burkholderia pseudomallei DM98]
Length = 231
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE ++ P ++ S S+ S + ++++ + L++
Sbjct: 55 QVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKI-- 112
Query: 112 QDRSPLREIHKYFENRQTQNY-----DKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAF 166
+ ++ ++ L S+ + L Y S +
Sbjct: 113 --------VEARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYA-SANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|94309458|ref|YP_582668.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
gi|93353310|gb|ABF07399.1| multidrug efflux system, subunit B [Cupriavidus metallidurans CH34]
Length = 1051
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 51 LQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVY 110
Q Q +E+ P +L E P +I ++L Q +R + S + + LR Y
Sbjct: 663 TQYQFTVEDPDPAVLAEWVPKLI-----ERLK-QEPELR-------DVASDQQNNGLRAY 709
Query: 111 L---QDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFD 167
+ +D + I + + Q + IF +S + T+ + +SPE
Sbjct: 710 VEIDRDAAARFGITTAVIDSALYSAFGQRLVSTIFTQSSQYRVVLETMPQFRVSPESLSA 769
Query: 168 LE 169
L
Sbjct: 770 LR 771
>gi|260061487|ref|YP_003194567.1| isoleucyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
gi|88785619|gb|EAR16788.1| isoleucyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
Length = 1134
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 22/151 (14%)
Query: 24 FLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVV-SQEDKLS 82
+ I+ L++ E +S ++EK ++ + + +I V Q + +
Sbjct: 875 LARFPEADTGLIDKALEDRMEKAQTISSLVLSIRQKEKIKVRQPLQKVMIPVLDQAQRQA 934
Query: 83 LQRDSIRLLW------VESLEKKSMEMLDSLRV----------YLQDRSPLREIHKYFEN 126
++ S + VE L+ S ++ R+ + +D +
Sbjct: 935 IEAVSDLIRSEVNVKEVELLDDASGILVK--RIKPNFKTLGPRFGKDMKAIAGAVSRLGQ 992
Query: 127 RQTQNYDKQGKIGLIFLRSQ---GKIEIEIT 154
Q +++G+I L ++EI+
Sbjct: 993 EDIQKIEREGEIVLELENKNIILQLQDVEIS 1023
>gi|116624561|ref|YP_826717.1| acriflavin resistance protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227723|gb|ABJ86432.1| acriflavin resistance protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 1031
Score = 37.3 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 16/147 (10%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 42 AEEDPNFLSLQEQQQLEEE---KPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
+ E+ N + + L + + R + E ++ S E+
Sbjct: 582 SLEETNRVITHVENILRKTPEVESTSRRTGLQLGLAQVTEANTGDISVKLKKGRKRSGEE 641
Query: 99 KSMEMLDSLRVYLQDRSPLREIH--KYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156
++ R ++ P+ ++ + ++ + + + L
Sbjct: 642 VIADV----RAKIKKAEPVLDVEFPQLLQDMIGDLTSAPEPVVIKLFSQDPE-----LLK 692
Query: 157 HYPISPEIAFDLEHITGITKVVQVIHN 183
+ P++A ++ I G+ ++ I N
Sbjct: 693 IWA--PQVAGAIKKIPGVVDILNGIEN 717
>gi|319790800|ref|YP_004152440.1| anti-feci sigma factor, fecr [Variovorax paradoxus EPS]
gi|315593263|gb|ADU34329.1| anti-FecI sigma factor, FecR [Variovorax paradoxus EPS]
Length = 342
Score = 37.3 bits (85), Expect = 0.99, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 58 EEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWV-----ESLEKKSMEMLDSLRVYLQ 112
E + +L + E ++ +R+ V E ++ +S++ + R +
Sbjct: 210 ETTELTMLESRTTVQAGKGAEARVIGPGQRVRITEVGIGPAEPVDVRSVDNAWTRRQLVA 269
Query: 113 DRSPLREIHKYFENRQT-----QNYDKQG-KIGLIFLRSQGKIEIEITLDHYPISPEIA 165
D PL E+ + QG ++ + +++ +D + P++
Sbjct: 270 DDRPLSEVLDELDRYHPGGIVYDRARTQGIRVSAVLPLDDTTRALQLLVDSF---PQLR 325
>gi|269140686|ref|YP_003297387.1| putative regulator of cell autolysis [Edwardsiella tarda EIB202]
gi|267986347|gb|ACY86176.1| putative regulator of cell autolysis [Edwardsiella tarda EIB202]
gi|304560471|gb|ADM43135.1| Putative membrane protein [Edwardsiella tarda FL6-60]
Length = 579
Score = 37.3 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 20/168 (11%)
Query: 21 NHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLRE-KKPYII-----V 74
N F + I L + Q+ Q L + + +LL P+ +
Sbjct: 335 NRLFSSINRTLGEGIAHLLSAQILAGKYE--QQTQLLAQSQIKLLHAQVNPHFLFNALNT 392
Query: 75 VSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDK 134
+S + +L + + +K+++ + V L D L ++ Y E + + +
Sbjct: 393 LSAVIRRDPDHARRLVLSLSTFFRKNLK-RNGDEVTLADE--LEHVNAYLEIEKARFAE- 448
Query: 135 QGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEH----ITGITKVV 178
L+ E+ L + + P + ++H + G+ +V
Sbjct: 449 ----NLVVAVCSDAALREVRLPAFSLQPIVENAIKHGTAQLFGVGRVE 492
>gi|91775713|ref|YP_545469.1| multidrug efflux protein [Methylobacillus flagellatus KT]
gi|91709700|gb|ABE49628.1| Hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
KT]
Length = 1037
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
+ +EE ++ P ++ +S S+ + + ++E+ + L+
Sbjct: 55 KVIEESVTAIIEREMNGAPGLMYISATSSPGTASLSLTFRQGTNPDLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ +N I LI L S+G EI L + +
Sbjct: 112 -------TVEARLPEVVRRNGIFIEKSADSIQLIVSLTSEGNRLTEIELGELA-AANVLQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227]
gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227]
Length = 1142
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 9/94 (9%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + L++ + +LL + + I+ + V +++
Sbjct: 1019 LDDRSGRLEVMLFTDALDKYQ-QLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1077
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDK 134
+ L + L DR ++
Sbjct: 1078 EKYASGLAISLTDRQIDDQLLNRLRQSLDPTALG 1111
>gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052]
gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
8052]
Length = 1191
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 30 CYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIR 89
+++I L+ + + + LE+ K L I+ K + +
Sbjct: 1045 TRNNSIMAFLKLEDLTGTIEVIVFPKTLEKVK-ELCVTDSLVIVKGRLSLK-EDEPPKLI 1102
Query: 90 LLWVESLEKKSMEMLDSLRVYLQ--DRSPLREIHKYFENRQTQNYDKQGKIGL 140
+E LEK + +VYL+ D+ + K + + Y I +
Sbjct: 1103 CESIEPLEKVNTS-----KVYLRVDDKVAATVLSKKLKELLIKEYIGDTPIYI 1150
>gi|270159396|ref|ZP_06188052.1| sensor protein KdpD [Legionella longbeachae D-4968]
gi|289165792|ref|YP_003455930.1| osmosensitive K+ channel His-kinase sensor [Legionella longbeachae
NSW150]
gi|269987735|gb|EEZ93990.1| sensor protein KdpD [Legionella longbeachae D-4968]
gi|288858965|emb|CBJ12891.1| putative osmosensitive K+ channel His-kinase sensor [Legionella
longbeachae NSW150]
Length = 653
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 81 LSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGL 140
++ R + L + LE++ + L+++L + + H + I
Sbjct: 1 MNDSRPNPNALLQQVLEEEKQQQRGKLKIFLGAAPGVGKTHSMLHEALEEQAKGLDIIVG 60
Query: 141 IFLRSQGKIEIEITLDHYPISP--------------EIAFDLEHITGITKVVQVIH 182
I +EI L ++ I P ++ L+ G+ + ++ H
Sbjct: 61 IVESHGRSEIVEI-LKNFVILPKVTIDYHGKKLQEFDLDAALKRNPGLIIMDEMAH 115
>gi|317489804|ref|ZP_07948302.1| peptidase family U32 [Eggerthella sp. 1_3_56FAA]
gi|316911089|gb|EFV32700.1| peptidase family U32 [Eggerthella sp. 1_3_56FAA]
Length = 296
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 11/132 (8%)
Query: 3 LIFFPKNNNRKGKKKPDGNHDFLFLEDCY--DHAIEMKLQEAEEDPNFLSLQEQQQLEEE 60
+I+ P N ++G+ G + Y + + E ++ P + ++ +
Sbjct: 33 IIYVPALNYKRGEAVVAGQRSATAEQAGYPKQAVVALPTVEHDQVPG----TREAAIDFD 88
Query: 61 KPRLLREKKPYII-----VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRS 115
R ++ KP ++ +V + + L + L + RV+L
Sbjct: 89 PWRYVKPGKPVLVENLAGLVRAAELGCEVEVGPHIPITNPLSLAAAAELGARRVWLSPEL 148
Query: 116 PLREIHKYFENR 127
L +I E+
Sbjct: 149 TLGQIADIAEDA 160
>gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 1173
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 5/131 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + LL+ ++ + +R+ V S+E
Sbjct: 1033 LDDRSGRIEASLFADAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRVKRVMSMEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ +SLR+ LQ + L+ + + + I + ++R K ++ + + I
Sbjct: 1092 TNLAESLRLKLQTQD-LKGDQLRWLGELFKRHRGACPITMEYVRPDAKAVLQFG-EGWRI 1149
Query: 161 SP--EIAFDLE 169
P + L
Sbjct: 1150 DPADALIQALR 1160
>gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
Length = 1146
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 8/136 (5%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L + + + L+ + RL + + +Q D+ + V +LE+
Sbjct: 1008 LALEDRSGAMEIVIGESLLDTVRDRLRDDALLVLRGKAQTDRFNG-GLRFNADSVWTLEE 1066
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY 158
+ S+R+ L S + +++ + L+ + ++ +++
Sbjct: 1067 ARARLGKSIRLKLNGASSAEPLVGLARQHASEDG-----LPLLLDVERAGAQVRLSVPAC 1121
Query: 159 PISP--EIAFDLEHIT 172
+ P I L ++
Sbjct: 1122 RLPPTDPILSALAQLS 1137
>gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
Length = 1146
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 8/136 (5%)
Query: 39 LQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEK 98
L + + + L+ + RL + + +Q D+ + V +LE+
Sbjct: 1008 LALEDRSGAMEIVIGESLLDTVRDRLRDDALLVLRGKAQTDRFNG-GLRFNADSVWTLEE 1066
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY 158
+ S+R+ L S + +++ + L+ + ++ +++
Sbjct: 1067 ARARLGKSIRLKLNGASSAEPLVGLARQHASEDG-----LPLLLDVERAGAQVRLSVPAC 1121
Query: 159 PISP--EIAFDLEHIT 172
+ P I L ++
Sbjct: 1122 RLPPTDPILSALAQLS 1137
>gi|170701623|ref|ZP_02892568.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia ambifaria IOP40-10]
gi|170133477|gb|EDT01860.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia ambifaria IOP40-10]
Length = 1045
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S ++ L Y S +
Sbjct: 112 -------TVEARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVDGVGKVQ 175
>gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 1147
Score = 36.1 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 49 LSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLR 108
+S+ L EK + E ++V+ + + +I + L + ++ + ++
Sbjct: 1016 VSILVFPNLYREKMEQITEGN--VVVIEGSVREEEESKTIIAKDILPLNDEIVKNIRNIT 1073
Query: 109 VYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL-DHY--PISPEIA 165
+ + D E + +N + +GK +I +++ L Y PI PE+
Sbjct: 1074 IKIYDEEIKDEFLYKLKEFIEKNRNGKGKP-VIIEAKLKDCFVKLQLHPDYSLPIEPEVL 1132
Query: 166 FDLEHI 171
+L+ +
Sbjct: 1133 KELQRL 1138
>gi|301784821|ref|XP_002927826.1| PREDICTED: myosin-Vb-like, partial [Ailuropoda melanoleuca]
Length = 1960
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 31 YDHAIEMKLQEAEEDPNFLSLQEQQQLEE--------EKPRLLREKKPYIIVVSQEDKLS 82
+ ++ + +E EE+ L +Q + EE + LL + V QE
Sbjct: 1455 LEAQLQAQSREHEEEVQGLKVQVEALKEELDKQQQTFCQTLLLSPEAQVEFGVQQEISRL 1514
Query: 83 LQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF 142
+ VE LEK ++ L++Y++ L + + + ++ ++ +
Sbjct: 1515 TNENLDLKELVEKLEKNERKLKKQLKIYMKKVQDLEA-AQALAQSERRRHELNRQVTVQR 1573
Query: 143 LRSQGKIEIE 152
+ +E
Sbjct: 1574 KEKDFQGMLE 1583
>gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5]
gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 5/131 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + LL+ ++ + +R+ V S+E
Sbjct: 1033 LDDRSGRIEASLFADAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRVKRVMSMEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ +SLR+ + L+ + + + I + + R K ++ +++ I
Sbjct: 1092 TNLAESLRLKIHS-DALKGDQLRWLGDLFKRHRGACPITMEYTRDDAKALLQFG-ENWRI 1149
Query: 161 SP--EIAFDLE 169
P + L
Sbjct: 1150 DPADSLIQALR 1160
>gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
Length = 1158
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEKKS 100
+ + L++ +L +K +IVVS + Q + + + ++++
Sbjct: 1019 DRSGRLDLTLFGEALDKFGEKL---QKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEAR 1075
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
SL + L K F+ + + +L QG+ +++ + + +
Sbjct: 1076 ARYAKSLAICLNQEQINTTFIKQFKAILEPYSGNTLPVHIYYLSPQGRALVKMGV-QWSV 1134
Query: 161 SP 162
+P
Sbjct: 1135 NP 1136
>gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
B728a]
gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
B728a]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
1704B]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
301020]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|325830401|ref|ZP_08163858.1| peptidase, U32 family [Eggerthella sp. HGA1]
gi|325487868|gb|EGC90306.1| peptidase, U32 family [Eggerthella sp. HGA1]
Length = 840
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 11/132 (8%)
Query: 3 LIFFPKNNNRKGKKKPDGNHDFLFLEDCY--DHAIEMKLQEAEEDPNFLSLQEQQQLEEE 60
+I+ P N ++G+ G + Y + + E ++ P + ++ +
Sbjct: 577 IIYVPALNYKRGEAVVAGQRSATAEQAGYPKQAVVALPTVEHDQVPG----TREAAIDFD 632
Query: 61 KPRLLREKKPYII-----VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRS 115
R ++ KP ++ +V + + L + L + RV+L
Sbjct: 633 PWRYVKPGKPVLVENLAGLVRAAELGCEVEVGPHIPITNPLSLAAAAELGARRVWLSPEL 692
Query: 116 PLREIHKYFENR 127
L +I E+
Sbjct: 693 TLGQIADIAEDA 704
>gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
642]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
str. 2250]
gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 1173
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 1033 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1092 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1148
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1149 IDPADSLIQALR 1160
>gi|257790355|ref|YP_003180961.1| peptidase U32 [Eggerthella lenta DSM 2243]
gi|257474252|gb|ACV54572.1| peptidase U32 [Eggerthella lenta DSM 2243]
Length = 840
Score = 36.1 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 11/132 (8%)
Query: 3 LIFFPKNNNRKGKKKPDGNHDFLFLEDCY--DHAIEMKLQEAEEDPNFLSLQEQQQLEEE 60
+I+ P N ++G+ G + Y + + E ++ P + ++ +
Sbjct: 577 IIYVPALNYKRGEAVVAGQRSATAEQAGYPKQAVVALPTVEHDQVPG----TREAAIDFD 632
Query: 61 KPRLLREKKPYII-----VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRS 115
R ++ KP ++ +V + + L + L + RV+L
Sbjct: 633 PWRYVKPGKPVLVENLAGLVRAAELGCEVEVGPHIPITNPLSLAAAAELGARRVWLSPEL 692
Query: 116 PLREIHKYFENR 127
L +I E+
Sbjct: 693 TLGQIADIAEDA 704
>gi|281343480|gb|EFB19064.1| hypothetical protein PANDA_017659 [Ailuropoda melanoleuca]
Length = 1856
Score = 36.1 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 31 YDHAIEMKLQEAEEDPNFLSLQEQQQLEE--------EKPRLLREKKPYIIVVSQEDKLS 82
+ ++ + +E EE+ L +Q + EE + LL + V QE
Sbjct: 1351 LEAQLQAQSREHEEEVQGLKVQVEALKEELDKQQQTFCQTLLLSPEAQVEFGVQQEISRL 1410
Query: 83 LQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF 142
+ VE LEK ++ L++Y++ L + + + ++ ++ +
Sbjct: 1411 TNENLDLKELVEKLEKNERKLKKQLKIYMKKVQDLEA-AQALAQSERRRHELNRQVTVQR 1469
Query: 143 LRSQGKIEIE 152
+ +E
Sbjct: 1470 KEKDFQGMLE 1479
>gi|89093075|ref|ZP_01166026.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Oceanospirillum sp. MED92]
gi|89082725|gb|EAR61946.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Oceanospirillum sp. MED92]
Length = 367
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITG 173
+ I + + +G+ ++ +E + L ++P L+ + G
Sbjct: 124 PVMIEAICRQYITGSMWRSYAKGEREFCGIQIANDLEKDQKLPELLVTPSTKGILKGVPG 183
Query: 174 ITKVVQV 180
+ +V V
Sbjct: 184 VPEVDDV 190
>gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
Length = 1191
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 11/130 (8%)
Query: 55 QQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLD--SLRVYLQ 112
+ E LL + ++ + S+RL E+ +LR+ L+
Sbjct: 1056 AEAAAEMSSLLVRDRVLVVQGGLREDEFNGGWSLRLKQAWDFEQLCANHAQRLALRLDLR 1115
Query: 113 DRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD-----HYPISPEIAFD 167
D I + L + LD ++P +
Sbjct: 1116 DPQAWNRIEDVLARH----RPGPTPLRLHVQVGRKGESATGVLDLNGSNSVRVAPPLLDA 1171
Query: 168 LEHITGITKV 177
L + + V
Sbjct: 1172 LRGLPIVRGV 1181
>gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
ATCC 33393]
gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
ATCC 33393]
Length = 1172
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEKKS 100
+ + L++ +L +K +IVVS + Q + + + ++++
Sbjct: 1033 DRSGRLDLTLFGEALDKFGEKL---QKDTVIVVSGQVSFDDFSQGLRMSVRDLMTIDEAR 1089
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
SL + L + K F++ + + + QG+ +++ + + +
Sbjct: 1090 ARYAKSLAICLSQEQITPQFIKKFKHILQPYSSNSLPVHIYYQSPQGRALVKMGV-QWSV 1148
Query: 161 SP 162
+P
Sbjct: 1149 NP 1150
>gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
FF5]
Length = 1081
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 941 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 999
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 1000 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 1056
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 1057 IDPADSLIQALR 1068
>gi|40556165|ref|NP_955250.1| CNPV227 N1R/p28-like protein [Canarypox virus]
gi|40233990|gb|AAR83573.1| CNPV227 N1R/p28-like protein [Canarypox virus]
Length = 359
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 8 KNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLRE 67
++N R +K + ++++ ++ + D + L + ++ E K +++
Sbjct: 196 EHNKRMEEKYDRDTRELKEHNKELSNSVKRMEEKYDRDTHELKTELKKIEERLKDKVINP 255
Query: 68 KKPYII--VVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSP-----LREI 120
P + +V ++K L E L+++ ++ +V+ P +
Sbjct: 256 SSPNKLHRLVILQNKRDPNSFKTLRLQAERLDRELDKVKRDYKVFFNAYEPNAVSCFNRL 315
Query: 121 HKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ ++ + L L + G E+ L + +
Sbjct: 316 KERLLEQERVKINYN-DFTLCDLENYGVRELCNDLQNLDL 354
>gi|242024810|ref|XP_002432819.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518328|gb|EEB20081.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 1972
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 39/149 (26%)
Query: 7 PKNNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLR 66
P N+N P+G + FL+D + E + E +L ++
Sbjct: 1338 PDNSN-----TPEGEIRYKFLDDDGNSGKENPFKIHSETG-----LISTKLPLDR----E 1383
Query: 67 EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFEN 126
++ Y +++ +D+ + + +IR L +E L+ + D P
Sbjct: 1384 KQSSYDLIIVAQDRGDVPQQAIRKLHIEILD-------------VDDHKP---------- 1420
Query: 127 RQTQNYDKQGKIGLIFLRSQGKIEIEITL 155
+ + I + E E+ L
Sbjct: 1421 -YFKRSIDESPIVMKVTEESPP-ETEVGL 1447
>gi|46200108|ref|YP_005775.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
gi|46197736|gb|AAS82148.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
Length = 2067
Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWV---ESLE 97
++E ++ + ++ PRL + P +++ E + + V E LE
Sbjct: 1916 LSDETGALEAVAFGRAYDQVSPRLKED-TPVLVL--AEVEREEGGVRVLAQAVWTYEELE 1972
Query: 98 KKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH 157
+ + + L D + + + G + L E + L
Sbjct: 1973 QVPRALEVEVEASLLDDRGVAHLKSLLDEHA-------GTLPLYVRVQGAFGEALLALRE 2025
Query: 158 YPISPEIAFDLEHI 171
+ E LE
Sbjct: 2026 VRVGEEALGALEAA 2039
>gi|55980149|ref|YP_143446.1| DNA polymerase III subunit alpha [Thermus thermophilus HB8]
gi|55771562|dbj|BAD70003.1| DNA polymerase III alpha subunit [Thermus thermophilus HB8]
Length = 2067
Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWV---ESLE 97
++E ++ + ++ PRL + P +++ E + + V E LE
Sbjct: 1916 LSDETGALEAVAFGRAYDQVSPRLKED-TPVLVL--AEVEREEGGVRVLAQAVWTYEELE 1972
Query: 98 KKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH 157
+ + + L D + + + G + L E + L
Sbjct: 1973 QVPRALEVEVEASLLDDRGVAHLKSLLDEHA-------GTLPLYVRVQGAFGEALLALRE 2025
Query: 158 YPISPEIAFDLEHI 171
+ E LE
Sbjct: 2026 VRVGEEALGALEAA 2039
>gi|206560037|ref|YP_002230801.1| multidrug efflux protein [Burkholderia cenocepacia J2315]
gi|198036078|emb|CAR51973.1| multidrug efflux system transporter protein AmrB [Burkholderia
cenocepacia J2315]
Length = 1046
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S ++ L Y S +
Sbjct: 112 -------TVDARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|170732947|ref|YP_001764894.1| multidrug efflux protein [Burkholderia cenocepacia MC0-3]
gi|169816189|gb|ACA90772.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia cenocepacia MC0-3]
Length = 1046
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S ++ L Y S +
Sbjct: 112 -------TVDARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|107022696|ref|YP_621023.1| multidrug efflux protein [Burkholderia cenocepacia AU 1054]
gi|116689645|ref|YP_835268.1| multidrug efflux protein [Burkholderia cenocepacia HI2424]
gi|105892885|gb|ABF76050.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
1054]
gi|116647734|gb|ABK08375.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia cenocepacia HI2424]
Length = 1046
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + ++E+ + L+
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLK--- 111
Query: 112 QDRSPLREIHKYFENRQTQNY----DKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAF 166
+ ++ I L+ L S ++ L Y S +
Sbjct: 112 -------TVDARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYA-SANVVQ 163
Query: 167 DLEHITGITKVV 178
L + G+ KV
Sbjct: 164 ALRRVEGVGKVQ 175
>gi|94967338|ref|YP_589386.1| acriflavin resistance protein [Candidatus Koribacter versatilis
Ellin345]
gi|94549388|gb|ABF39312.1| acriflavin resistance protein [Candidatus Koribacter versatilis
Ellin345]
Length = 1056
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 66 REKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR-EIHKYF 124
R + E ++ +++ ++ + + L+ L E +
Sbjct: 632 RTGLQMGLAAVTEANYGDFTVKLKDKRSRGIDEIMADIREEI---LKTEPELDVEFTQVL 688
Query: 125 ENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQVIHN 183
++ + I + L ++P IA ++ + G+ V+ + N
Sbjct: 689 QDMINDLANAPEPIYIKVFNPDPA-----ILS--QVAPRIADTIKAVPGVVDVLNGVDN 740
>gi|218297030|ref|ZP_03497707.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
gi|218242585|gb|EED09122.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
Length = 1645
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 45/145 (31%), Gaps = 19/145 (13%)
Query: 19 DGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQE 78
G + + + + + ++E + + E P+L + P +++ E
Sbjct: 1473 SGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDI-PLLVLAEVE 1531
Query: 79 DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ----DRSPLREIHKYFENRQTQNYDK 134
+ + V +LE+ +E +L V + D + + +
Sbjct: 1532 ---KGEELRVLAQAVWTLEE-VLEAPKALEVEVDHALLDEKGVARLKSLLDEH-----PG 1582
Query: 135 QGKIGLIFLRSQGK-----IEIEIT 154
+ L G+ E+ +
Sbjct: 1583 SLPVYLRVQGPFGEALFALREVRVG 1607
>gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp]
gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
Length = 1176
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + LL+ ++ + +R V SLE+
Sbjct: 1036 LDDRSGRIEASLFADAFASNQ-ALLQNDALVVVEGEVSNDDFSGGLRLRAKRVMSLEEAR 1094
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ DSLRV + L+ + + + + + + + ++ + + I
Sbjct: 1095 TGLADSLRVRVASE-ALKGDRLRWLAELCSKHRGACPVTVDYSGDEARALLQFG-EAWRI 1152
Query: 161 SP--EIAFDLE 169
P + L
Sbjct: 1153 DPADTLIQALR 1163
>gi|307717799|ref|YP_003873331.1| hypothetical protein STHERM_c00820 [Spirochaeta thermophila DSM
6192]
gi|306531524|gb|ADN01058.1| hypothetical protein STHERM_c00820 [Spirochaeta thermophila DSM
6192]
Length = 870
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 114 RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEI--EITLDHYPISPEIAFDLEHI 171
+ E+ + + + ++ L+ + E L P+SPE+ L +
Sbjct: 214 PDAVSEVRAALMEVRDALKEGE-EVELVLADRGLLGLLAEEADLLGIPLSPEVGRALREV 272
Query: 172 TGI 174
G+
Sbjct: 273 PGV 275
>gi|134295682|ref|YP_001119417.1| multidrug efflux protein [Burkholderia vietnamiensis G4]
gi|134138839|gb|ABO54582.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
[Burkholderia vietnamiensis G4]
Length = 1045
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 55 QQLEEEKPRLLR---EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYL 111
Q +EE L+ P ++ S + + + ++E+ + L+ +
Sbjct: 55 QVVEESVTALIEREMNGAPGLLYTSASSSAGSASLYLTFKQGVNADLAAVEVQNRLK-TV 113
Query: 112 QDRSPLREIHKYFENRQTQNYDKQGKIGLIF-LRSQGKIEIEITLDHYPISPEIAFDLEH 170
R P + + + I L+ L S ++ L Y S + L
Sbjct: 114 DARLPEPVRRAGIQVEKAAD-----NIQLVVSLTSDDGRMTDVQLGEYA-SANVVQALRR 167
Query: 171 ITGITKVV 178
+ G+ +V
Sbjct: 168 VDGVGRVQ 175
>gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
Length = 1151
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 31 YDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRL 90
K + + + + + +++ + ++++ + + S+
Sbjct: 1006 LSGEPMAKFELEDATGAMEVICFPKDFIKFGYKIIEDA---VVMIEGHVRSEGNKLSLVA 1062
Query: 91 LWVESLEKKSMEMLDSLRVYLQDR--SPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
+ L+ +L + + D + E+ K +I L + K
Sbjct: 1063 GMINGLDDLEENKFLNLYILIDDESKEKVSELKKII-----LKNKGNNQIFLAMNTGESK 1117
Query: 149 IEIEITLD-HYPIS 161
E+ I L Y +S
Sbjct: 1118 KEV-IKLGSKYDVS 1130
>gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ]
gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ]
Length = 1176
Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 2/100 (2%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + LL+ ++ + +R V SLE+
Sbjct: 1036 LDDRSARIEASLFADAFAGAQ-ALLQTDALVVVEGEVSNDDFSGGLRLRAKRVMSLEEAR 1094
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGL 140
+ +SLR+ + L + Y I L
Sbjct: 1095 TGLAESLRLRVASE-ALEGDRLRWLAELCSRYRGACPITL 1133
>gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
Length = 1173
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V SLE+
Sbjct: 1033 LDDRSGRIEASLFAEAFNSAQ-ALLQTDALVVVEGEVSNDDFSGGLRLRAKRVMSLEEAR 1091
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ +SLRV + L+ + + I L + + ++ + + I
Sbjct: 1092 TGLAESLRVKV-AGEALKGERMRWLAEVCGRHRGACPITLEYTGHDARALLQFG-EDWRI 1149
Query: 161 SP--EIAFDLE 169
P + L
Sbjct: 1150 DPADNLIQALR 1160
>gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501]
gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501]
Length = 1131
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V SLE+
Sbjct: 991 LDDRSGRIEASLFAEAFNSAQ-ALLQTDALVVVEGEVSNDDFSGGLRLRAKRVMSLEEAR 1049
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPI 160
+ +SLRV + L+ + + I L + + ++ + + I
Sbjct: 1050 TGLAESLRVKV-AGEALKGERMRWLAEVCGRHRGACPITLEYTGHDARALLQFG-EDWRI 1107
Query: 161 SP--EIAFDLE 169
P + L
Sbjct: 1108 DPADNLIQALR 1118
>gi|229220869|gb|ACQ45368.1| SON DNA-binding protein isoform F (predicted), 3 prime [Dasypus
novemcinctus]
Length = 2012
Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 10/137 (7%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSME 102
E + + L E + EE+ +L ++S E + I E L+
Sbjct: 827 LEPESSVILAESAVVPEEREIVLETPMSETPIMSAETTMLPSDPPIMSEMAEPLDSMQAS 886
Query: 103 MLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISP 162
++ + + P I + ++ Q + ++ + + P
Sbjct: 887 GQAVSQLTISLQEPAVAIPEPVQSTVEQPATAISEPPVVVALEPPA----LAVPE----P 938
Query: 163 EIAFDLEHITGITKVVQ 179
L + + V +
Sbjct: 939 PAVAAL--VPPVVAVSE 953
>gi|218295381|ref|ZP_03496194.1| CRISPR-associated helicase Cas3 [Thermus aquaticus Y51MC23]
gi|218244013|gb|EED10539.1| CRISPR-associated helicase Cas3 [Thermus aquaticus Y51MC23]
Length = 749
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 89 RLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
RL LE+ L ++++ ++ + E Q K+ + L L
Sbjct: 644 RLEGFRLLEEAPS-----LPIFVEWDEEATQLLRRLEEAFAQKDPKERRKSLRLLLP--- 695
Query: 149 IEIEITLDHYPISPEIAFDLEHIT 172
L Y +SP + L+++
Sbjct: 696 -----RLQAYTVSPLLRRALKNLP 714
>gi|87200580|ref|YP_497837.1| phosphoenolpyruvate carboxylase [Novosphingobium aromaticivorans
DSM 12444]
gi|87136261|gb|ABD27003.1| Phosphoenolpyruvate carboxylase [Novosphingobium aromaticivorans
DSM 12444]
Length = 927
Score = 34.6 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 59 EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLR 118
R + E P ++ + S + + + L+ + R+ D + L
Sbjct: 233 AASLRAIDEGHPLLVTLDAAQAYSSEMAEL---FSSPLDTPEALAAAANRLTADDPAKLL 289
Query: 119 EIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD----HYPI-SPEIAFDLEH 170
+ ++ + + G + + + L H+ + S ++ L
Sbjct: 290 SLAPLIQSLEAEARTADGDAAIGLATLAAAMRAD-GLGVGWIHFRVNSSQLHNALRR 345
>gi|43336420|gb|AAS46344.1| NlmA6 [Streptomyces nanchangensis]
Length = 4635
Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ ++ + + + E + + L L+D + + + +
Sbjct: 623 VMVSLAAVWRSFGVEPVAVVGHSQG-EVAAACVAGGLS--LEDGARVVAVRSRLVREKLS 679
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDHY 158
G + L +E+ L +
Sbjct: 680 GLGGMGSVAL------PVEAVEVRLGRF 701
Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
++ ++ + + + E + + L L+D + + + +
Sbjct: 2141 VMVSLAAVWRSFGVEPVAVVGHSQG-EVAAACVAGGLS--LEDGARVVAVRSRLVREKLS 2197
Query: 131 NYDKQGKIGLIFLRSQGKIEIEITLDHY 158
G + L +E+ L +
Sbjct: 2198 GLGGMGSVAL------PVEAVEVRLGRF 2219
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 34.6 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 21 NHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDK 80
I Q ++P ++++++ + +VS +K
Sbjct: 179 QRQIALFSATMPAVIRKIAQSHLKNPQHVTIKDKTTTAP-------TIRQRFWMVSGRNK 231
Query: 81 LSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIG 139
+ R+L E + + ++++ ++ E+ + E R G +
Sbjct: 232 IDALT---RILEFEPFD--------GMIIFVRTKTATDEVAERLEARGYAASALNGDVK 279
>gi|269138803|ref|YP_003295504.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
[Edwardsiella tarda EIB202]
gi|267984464|gb|ACY84293.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
[Edwardsiella tarda EIB202]
gi|304558795|gb|ADM41459.1| 4-Hydroxy-2-oxoglutarate aldolase /
2-dehydro-3-deoxyphosphogluconate aldolase [Edwardsiella
tarda FL6-60]
Length = 213
Score = 34.6 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 89 RLLWVESLEKK-SMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQG 147
L L K + L V L+ L I + G + ++
Sbjct: 25 TLEQAVPLAKALVAGGVRVLEVTLRTDCALEAIR-LIAQEVPEAIVGAGTVT----NAEQ 79
Query: 148 KIEIEITLDHYPISP---------EIAFDLEHITGITKVVQVIH 182
++ + ISP +A + I GI+ V +++
Sbjct: 80 LRQVTEAGAQFAISPGLTEGLLQAAVAGSIPLIPGISTVSELMQ 123
>gi|154247961|ref|YP_001418919.1| alcohol dehydrogenase [Xanthobacter autotrophicus Py2]
gi|154162046|gb|ABS69262.1| Alcohol dehydrogenase zinc-binding domain protein [Xanthobacter
autotrophicus Py2]
Length = 356
Score = 34.6 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 47 NFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQ-RDSIRLLWVES---LEKKSME 102
++ + + + + L+ P + V ++ ++ DS+ + L+ +
Sbjct: 138 DYNVFRVPDSVSDAQAALIE---PTAVTVYAAERGGVKPGDSVLVTGAGPIGQLQVLAAR 194
Query: 103 MLDSLRVYLQD--RSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156
+ R++L D + L + + T N I +++G + +++ L+
Sbjct: 195 AAGATRIFLSDTNDNRLAMARQILPDVITLNPRSDKVPEAIRDQTEGGVGVDVALE 250
>gi|288930773|ref|YP_003434833.1| acetylornithine and succinylornithine aminotransferase [Ferroglobus
placidus DSM 10642]
gi|288893021|gb|ADC64558.1| acetylornithine and succinylornithine aminotransferase [Ferroglobus
placidus DSM 10642]
Length = 378
Score = 34.6 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 106 SLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPIS 161
L + + E N + +I ++ + E+E ++ +S
Sbjct: 322 GLMIGFDKEKAFDFVSSMLEKGVLVNATSENRIRIVPPLIISREEVEFAVERMRLS 377
>gi|313247393|emb|CBY15644.1| unnamed protein product [Oikopleura dioica]
Length = 483
Score = 34.6 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 20 GNHDFLFLEDC--YDHAIEMKLQEAEEDPNFLSLQEQQQLEEEK--PRLLREKKPYIIVV 75
+ + E+ H +A E P +L E+ EEEK L ++
Sbjct: 195 ADFEVALFEETQKLYHDDSRNKLDAMEVPEYLKFVEKSLDEEEKRANSYLESSTVRPLLT 254
Query: 76 SQEDKLSLQ---RDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
E KL + R L L+K++ ++ R++ +D L + + +
Sbjct: 255 VCEIKLIGDHLASIASRGLSSMMLDKRTDDLTRLYRIFERDAGGLVALKEEL----NRYV 310
Query: 133 DKQGKIGLIFLRSQGKIEIEI 153
QG ++ + +E+
Sbjct: 311 RSQGSSIVVNPEKDSTMVVEM 331
>gi|313223961|emb|CBY43513.1| unnamed protein product [Oikopleura dioica]
Length = 544
Score = 34.6 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 20 GNHDFLFLEDC--YDHAIEMKLQEAEEDPNFLSLQEQQQLEEEK--PRLLREKKPYIIVV 75
+ + E+ H +A E P +L E+ EEEK L ++
Sbjct: 9 ADFEVALFEETQKLYHDDSRNKLDAMEVPEYLKFVEKSLDEEEKRANSYLESSTVRPLLT 68
Query: 76 SQEDKLSLQ---RDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNY 132
E KL + R L L+K++ ++ R++ +D L + + +
Sbjct: 69 VCEIKLIGDHLASIASRGLSSMMLDKRTDDLTRLYRIFERDAGGLVALKEEL----NRYV 124
Query: 133 DKQGKIGLIFLRSQGKIEIEI 153
QG ++ + +E+
Sbjct: 125 RSQGSSIVVNPEKDSTMVVEM 145
>gi|27378866|ref|NP_770395.1| ribose-5-phosphate isomerase A [Bradyrhizobium japonicum USDA 110]
gi|41017725|sp|Q89NS9|RPIA_BRAJA RecName: Full=Ribose-5-phosphate isomerase A; AltName:
Full=Phosphoriboisomerase A; Short=PRI
gi|27352015|dbj|BAC49020.1| ribose 5-phosphate isomerase [Bradyrhizobium japonicum USDA 110]
Length = 241
Score = 34.6 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 120 IHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITK 176
+ R+ + DK G + F+ G ++ L P +A L I G+ +
Sbjct: 158 VSGQMAVRKAKGGDKDGHV---FVTDGGHWILDAQLGRIVDPPSLAKALSAIPGVVE 211
>gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR]
Length = 1158
Score = 34.6 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEK 98
++ + E + LL + + I+ + E + +++ V ++E+
Sbjct: 1018 LDDKTARMDVRLFSNEYESYQ-ELLEKDR--ILWIKGEVRFDNFSNSNTMTAREVMAIEQ 1074
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITL--- 155
L L + + D + + E + I + + +E TL
Sbjct: 1075 ARETYLRHLAITVTDEQLAKGLAGKLEKLLQPFAEGTCPIKMRYQSE----RVEATLNVG 1130
Query: 156 DHYPISP--EIAFDLEHITGITKV 177
+ ++P E+ ++L+++ G +V
Sbjct: 1131 AQWYVNPSDELIYELQNLLGTQQV 1154
>gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase Iii
Alpha-Subunit
Length = 1220
Score = 34.6 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 19/145 (13%)
Query: 19 DGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQE 78
G + + + + + ++E + + E P+L + P +++ E
Sbjct: 1048 SGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDI-PLLVLAEVE 1106
Query: 79 DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ----DRSPLREIHKYFENRQTQNYDK 134
+ + V +LE+ +E +L V + D + + +
Sbjct: 1107 ---KGEELRVLAQAVWTLEE-VLEAPKALEVEVDHALLDEKGVARLKSLLDEH-----PG 1157
Query: 135 QGKIGLIFLRSQGK-----IEIEIT 154
+ L L G+ E+ +
Sbjct: 1158 SLPVYLRVLGPFGEALFALREVRVG 1182
>gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha
gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus]
Length = 1220
Score = 34.6 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 19/145 (13%)
Query: 19 DGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQE 78
G + + + + + ++E + + E P+L + P +++ E
Sbjct: 1048 SGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDI-PLLVLAEVE 1106
Query: 79 DKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQ----DRSPLREIHKYFENRQTQNYDK 134
+ + V +LE+ +E +L V + D + + +
Sbjct: 1107 ---KGEELRVLAQAVWTLEE-VLEAPKALEVEVDHALLDEKGVARLKSLLDEH-----PG 1157
Query: 135 QGKIGLIFLRSQGK-----IEIEIT 154
+ L L G+ E+ +
Sbjct: 1158 SLPVYLRVLGPFGEALFALREVRVG 1182
>gi|229495767|ref|ZP_04389495.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317341|gb|EEN83246.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 444
Score = 34.2 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 80 KLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIG 139
+ +++ +R E LE + S + + D+ L E + + Q
Sbjct: 165 REDPEKEELRARLAE-LENRMSSEQHSPAITVNDQMALLEKSYQLAAKYMPSGGGQSSSN 223
Query: 140 LIFLRSQGKIEIEITLDHYPISP---EIAFDL 168
+ S G+ E +P+SP ++ L
Sbjct: 224 MAL-ASDGETASEGKAVAFPVSPVSEQVVSAL 254
>gi|330950664|gb|EGH50924.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
Length = 230
Score = 34.2 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 7/132 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKS 100
+ + + + LL+ ++ + +R V S+E
Sbjct: 90 LDDRSARIEASLFAEAFHSAQ-SLLQTDAMVVVEGEVSNDDFSGGLRLRAKRVMSIEDAR 148
Query: 101 MEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDH-YP 159
+ +SLRV ++ L+ +G + + + L +
Sbjct: 149 TNLAESLRVTVR-AEALKG--DRLRWLGDLCKRHRGACPITVDYTGQDARALLQLGEAWR 205
Query: 160 ISP--EIAFDLE 169
I P + L
Sbjct: 206 IDPADSLIQALR 217
>gi|46200125|ref|YP_005792.1| ATP/GTP hydrolase [Thermus thermophilus HB27]
gi|46197753|gb|AAS82165.1| ATP/GTP hydrolase [Thermus thermophilus HB27]
Length = 170
Score = 34.2 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLL 91
+DP+ L Q + LE + L+ +P+++ S +LS + ++ R
Sbjct: 110 LKDPSLLLGQLEAALEGARLGLVEWGEPHLLGASHLLRLSPEGEARRAE 158
>gi|55980132|ref|YP_143429.1| hypothetical protein TTHA0163 [Thermus thermophilus HB8]
gi|55771545|dbj|BAD69986.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 170
Score = 34.2 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 43 EEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLL 91
+DP+ L Q + LE + L+ +P+++ S +LS + ++ R
Sbjct: 110 LKDPSLLLGQLEAALEGARLGLVEWGEPHLLGASHLLRLSPEGEARRAE 158
>gi|325186047|emb|CCA20549.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 764
Score = 34.2 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 9 NNNRKGKKKPDGNHDFLFLEDCYDHAIEMKLQEAEEDPNFLSLQEQQQL--EEEKPRLLR 66
N + K A+E KL+ ++ LQ + L + R L+
Sbjct: 231 NQHIVDAKLNTNQRVIEEKAVTMQRALEAKLRTHQQTVEARVLQFDKALKDATSEKRFLK 290
Query: 67 EKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSL 107
P I+ ++ DK + + ++ LE + ++ + L
Sbjct: 291 S-HPIIVSDTERDKHLDDQLRKLISRIKYLEDEIHDIKEPL 330
>gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
Length = 1142
Score = 34.2 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 53/141 (37%), Gaps = 8/141 (5%)
Query: 41 EAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLS--LQRDSIRLLWVESLEK 98
++ + E + LL + + I+ + E + +++ V ++E+
Sbjct: 1002 LDDKTARMDVRLFSNEYESYQ-ELLEKDR--ILWIKGEVRFDNFSNSNTMTAREVMAIEQ 1058
Query: 99 KSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHY 158
L L + + D + + E + I + + + + + + +
Sbjct: 1059 ARETYLRHLAITVTDEQLAKGLAGKLEKLLQPFAEGTCPIKMRYQSERVEATLNVG-AQW 1117
Query: 159 PISP--EIAFDLEHITGITKV 177
++P E+ ++L+++ G +V
Sbjct: 1118 YVNPSDELIYELQNLLGTQQV 1138
>gi|297489806|ref|XP_002697867.1| PREDICTED: myosin-Vb-like [Bos taurus]
gi|296473794|gb|DAA15909.1| myosin-Vb-like [Bos taurus]
Length = 1890
Score = 34.2 bits (77), Expect = 8.1, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 31 YDHAIEMKLQEAEEDPNFLSLQEQQQLEEE--------KPRLLREKKPYIIVVSQEDKLS 82
+ ++ + +E EE+ + L Q + EE + LL + + QE
Sbjct: 1385 LEAQLQAQSREHEEEVDNLKAQLEALKEEMDRQQQTFCQTLLLSPEAQVEFGIQQEMSRL 1444
Query: 83 LQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIF 142
+ VE LEK ++ L++Y++ L + + + ++ ++ +
Sbjct: 1445 TNENLDLKELVEKLEKNERKLKKQLKIYMKKVQDLEA-AQALAQSERKRHELNRQVTVQR 1503
Query: 143 LRSQGKIEIE 152
+ +E
Sbjct: 1504 KEKDFQGMLE 1513
>gi|120553249|ref|YP_957600.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
gi|120323098|gb|ABM17413.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
Length = 1050
Score = 34.2 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 80 KLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIG 139
+ + S+ + V + +S+ + +R + + R L + Q +
Sbjct: 625 RNDDELGSMLVELV-PSDSRSVRNAEFIREW-RSRMTLPAGLDALNINERQAGPPGRDVN 682
Query: 140 LIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKVVQ 179
+ + L + E+A L+ + G+ V
Sbjct: 683 VRLTGDDAE-----ALKR--AADEVAQALDTLPGVLDVED 715
>gi|197286590|ref|YP_002152462.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
[Proteus mirabilis HI4320]
gi|227357667|ref|ZP_03842019.1| KHG/KDPG aldolase [Proteus mirabilis ATCC 29906]
gi|194684077|emb|CAR45445.1| KHG/KDPG aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase and
2-dehydro-3-deoxy-phosphogluconate aldolase] [Proteus
mirabilis HI4320]
gi|227162146|gb|EEI47154.1| KHG/KDPG aldolase [Proteus mirabilis ATCC 29906]
Length = 213
Score = 34.2 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 90 LLWVESLEKK-SMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGK 148
+ + K + L V L+ + I + G + + Q
Sbjct: 26 IEEAVPVAKALVAGGVKVLEVTLRTDCAIEAIR-RIAKEVPEAIVGAGTV----INPQQL 80
Query: 149 IEIEITLDHYPISP---------EIAFDLEHITGITKVVQVI 181
++ + ISP +A + I GI+ V +++
Sbjct: 81 AQVTEAGAQFAISPGLTDALLKAAVAGSIPLIPGISTVSELM 122
>gi|320162224|ref|YP_004175449.1| putative ABC transporter ATP-binding protein [Anaerolinea
thermophila UNI-1]
gi|319996078|dbj|BAJ64849.1| putative ABC transporter ATP-binding protein [Anaerolinea
thermophila UNI-1]
Length = 314
Score = 33.8 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 15/112 (13%)
Query: 71 YIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQ 130
II+ L + L V+SL+++ + + L +H+
Sbjct: 156 IIIMDEPTQGLDPEGAREFLQLVQSLKEE------GITILLSSH----LLHQVQAICDRV 205
Query: 131 NYDKQGKIGLIFLRSQGKIEI-----EITLDHYPISPEIAFDLEHITGITKV 177
+G++ L+ + + + ++ I+PE+ L+ + G V
Sbjct: 206 GLFNRGRMELVGTVDELARRVLGRAFRVVMEVDDITPELTKALKKVPGAVDV 257
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.309 0.139 0.347
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,377,566,466
Number of Sequences: 13984884
Number of extensions: 43498732
Number of successful extensions: 180900
Number of sequences better than 10.0: 480
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 180045
Number of HSP's gapped (non-prelim): 506
length of query: 184
length of database: 4,792,584,752
effective HSP length: 130
effective length of query: 54
effective length of database: 2,974,549,832
effective search space: 160625690928
effective search space used: 160625690928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 77 (34.2 bits)