RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.754_1 (184 letters) >gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated. Length = 1135 Score = 30.1 bits (69), Expect = 0.37 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 22/120 (18%) Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLL--WVESLEKKSMEMLDSLRVYLQDRSP----L 117 LL E + ++ ++S +RL V LE+ + LR+ L DR L Sbjct: 1027 LLEEDRIVVVKG----QVSFDDGGLRLTAREVMDLEEARAKYARPLRISLPDRQLTPQLL 1082 Query: 118 REIHKYFENRQTQNYDKQGKIGL-IFLRSQGKIEIEITL-DHYPI--SPEIAFDLEHITG 173 + + E +G + ++L+ E E+ L D + + S + DL+ + G Sbjct: 1083 ERLKQVLEPH-------RGTSPVHLYLQDPDA-EAELRLGDRWRVTPSDALLGDLKALLG 1134 >gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional. Length = 381 Score = 28.2 bits (63), Expect = 1.5 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVES---------LEKKSMEMLDSLRVYLQD 113 PY++V++++ + + + L WV+S L K ML + VYL + Sbjct: 163 PYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDN 215 >gnl|CDD|148149 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain. This domain is bound to by GTP-attached Rho proteins, leading to activation of the Drf protein. Length = 187 Score = 28.1 bits (63), Expect = 1.6 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 17/104 (16%) Query: 38 KLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP---------YIIVVSQEDKLS-LQRDS 87 K + E F L E+ L EEK R +R K Y++ Q + LS S Sbjct: 3 KPDDDEILKLFEELMEEMNLPEEKRRPMRAKPIEKKWQLVVQYLLTNFQGESLSKSLSKS 62 Query: 88 IRLLWVESLEKKSMEM------LDSLRVYLQDRSPLREIHKYFE 125 E KK + L+SLRV L+ +P+ + ++ Sbjct: 63 NETGSPEYYVKKLKDGSIDQKCLESLRVALRT-NPVSWVTRFIG 105 >gnl|CDD|172541 PRK14049, PRK14049, ferrioxamine B receptor precursor protein; Provisional. Length = 726 Score = 27.6 bits (61), Expect = 2.1 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 44 EDPNFLSLQEQQQLEEEKPRLLREKKPY 71 E P +S +QQL++ P+ L E Y Sbjct: 78 ETPQSISSVTEQQLKDRNPQTLLETLAY 105 >gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. Length = 615 Score = 26.3 bits (58), Expect = 4.6 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%) Query: 18 PDGNHDFLFLEDCYDHAIEM----KLQEAEEDPNFLSLQEQQQ--LEEEKPRLLREKKPY 71 PD LED DH ++ ++ E +QE+Q LEE + ++L+E+K Sbjct: 61 PDPRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEK-- 118 Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101 E+ +L++ L +E LEKK + Sbjct: 119 ----GPENSSTLKK----LERLEKLEKKKL 140 >gnl|CDD|183824 PRK12902, secA, preprotein translocase subunit SecA; Reviewed. Length = 939 Score = 25.8 bits (57), Expect = 6.3 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 18/87 (20%) Query: 36 EMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVES 95 E+K E+ L+E Q +++ +P L+RE + + I LQ+ I LW E Sbjct: 829 ELKAFLHEQLRIAYDLKEAQ-IDQIRPGLMREAERFFI---------LQQ--IDTLWREH 876 Query: 96 LEKKSMEMLDS---LRVYLQDRSPLRE 119 L+ SM+ L LR Y Q + PL E Sbjct: 877 LQ--SMDALRESVGLRGYGQ-KDPLIE 900 >gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional. Length = 408 Score = 25.7 bits (56), Expect = 6.7 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 35 IEMKLQEAEEDPNFLSLQEQQQLEEEKPRL-LREKKPYIIVVSQEDKLSLQ--RDSIRLL 91 +EM+L A S+ + E+ + K+ Y++VV S + RDS+R Sbjct: 104 LEMELAAARAAQE--SILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRAT 161 Query: 92 WVESLEKK 99 W+ EK+ Sbjct: 162 WMPQGEKR 169 >gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional. Length = 455 Score = 25.7 bits (57), Expect = 6.9 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 12/52 (23%) Query: 47 NFLSLQEQQQLEEEKPRLLRE--KKPYIIVVSQ-EDKLSLQRDSIRLLWVES 95 L+ EQQQLEE LL E P I+ S ED S WVE Sbjct: 48 GVLTADEQQQLEEALNELLEEVRANPQQILASDAEDIHS---------WVEG 90 >gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. Length = 578 Score = 25.5 bits (56), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Query: 82 SLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120 SL D ++ W E+++ EM D LQ S L+EI Sbjct: 432 SLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEI 470 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.138 0.389 Gapped Lambda K H 0.267 0.0638 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,070,863 Number of extensions: 192942 Number of successful extensions: 478 Number of sequences better than 10.0: 1 Number of HSP's gapped: 476 Number of HSP's successfully gapped: 39 Length of query: 184 Length of database: 5,994,473 Length adjustment: 88 Effective length of query: 96 Effective length of database: 4,092,969 Effective search space: 392925024 Effective search space used: 392925024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.8 bits)