RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.754_1
(184 letters)
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 30.1 bits (69), Expect = 0.37
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 64 LLREKKPYIIVVSQEDKLSLQRDSIRLL--WVESLEKKSMEMLDSLRVYLQDRSP----L 117
LL E + ++ ++S +RL V LE+ + LR+ L DR L
Sbjct: 1027 LLEEDRIVVVKG----QVSFDDGGLRLTAREVMDLEEARAKYARPLRISLPDRQLTPQLL 1082
Query: 118 REIHKYFENRQTQNYDKQGKIGL-IFLRSQGKIEIEITL-DHYPI--SPEIAFDLEHITG 173
+ + E +G + ++L+ E E+ L D + + S + DL+ + G
Sbjct: 1083 ERLKQVLEPH-------RGTSPVHLYLQDPDA-EAELRLGDRWRVTPSDALLGDLKALLG 1134
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 28.2 bits (63), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 70 PYIIVVSQEDKLSLQRDSIRLLWVES---------LEKKSMEMLDSLRVYLQD 113
PY++V++++ + + + L WV+S L K ML + VYL +
Sbjct: 163 PYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDN 215
>gnl|CDD|148149 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain. This domain
is bound to by GTP-attached Rho proteins, leading to
activation of the Drf protein.
Length = 187
Score = 28.1 bits (63), Expect = 1.6
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 38 KLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKP---------YIIVVSQEDKLS-LQRDS 87
K + E F L E+ L EEK R +R K Y++ Q + LS S
Sbjct: 3 KPDDDEILKLFEELMEEMNLPEEKRRPMRAKPIEKKWQLVVQYLLTNFQGESLSKSLSKS 62
Query: 88 IRLLWVESLEKKSMEM------LDSLRVYLQDRSPLREIHKYFE 125
E KK + L+SLRV L+ +P+ + ++
Sbjct: 63 NETGSPEYYVKKLKDGSIDQKCLESLRVALRT-NPVSWVTRFIG 105
>gnl|CDD|172541 PRK14049, PRK14049, ferrioxamine B receptor precursor protein;
Provisional.
Length = 726
Score = 27.6 bits (61), Expect = 2.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 44 EDPNFLSLQEQQQLEEEKPRLLREKKPY 71
E P +S +QQL++ P+ L E Y
Sbjct: 78 ETPQSISSVTEQQLKDRNPQTLLETLAY 105
>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC.
Length = 615
Score = 26.3 bits (58), Expect = 4.6
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 18 PDGNHDFLFLEDCYDHAIEM----KLQEAEEDPNFLSLQEQQQ--LEEEKPRLLREKKPY 71
PD LED DH ++ ++ E +QE+Q LEE + ++L+E+K
Sbjct: 61 PDPRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEK-- 118
Query: 72 IIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
E+ +L++ L +E LEKK +
Sbjct: 119 ----GPENSSTLKK----LERLEKLEKKKL 140
>gnl|CDD|183824 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 25.8 bits (57), Expect = 6.3
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 36 EMKLQEAEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVES 95
E+K E+ L+E Q +++ +P L+RE + + I LQ+ I LW E
Sbjct: 829 ELKAFLHEQLRIAYDLKEAQ-IDQIRPGLMREAERFFI---------LQQ--IDTLWREH 876
Query: 96 LEKKSMEMLDS---LRVYLQDRSPLRE 119
L+ SM+ L LR Y Q + PL E
Sbjct: 877 LQ--SMDALRESVGLRGYGQ-KDPLIE 900
>gnl|CDD|178735 PLN03193, PLN03193, beta-1,3-galactosyltransferase; Provisional.
Length = 408
Score = 25.7 bits (56), Expect = 6.7
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 35 IEMKLQEAEEDPNFLSLQEQQQLEEEKPRL-LREKKPYIIVVSQEDKLSLQ--RDSIRLL 91
+EM+L A S+ + E+ + K+ Y++VV S + RDS+R
Sbjct: 104 LEMELAAARAAQE--SILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRAT 161
Query: 92 WVESLEKK 99
W+ EK+
Sbjct: 162 WMPQGEKR 169
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 25.7 bits (57), Expect = 6.9
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 47 NFLSLQEQQQLEEEKPRLLRE--KKPYIIVVSQ-EDKLSLQRDSIRLLWVES 95
L+ EQQQLEE LL E P I+ S ED S WVE
Sbjct: 48 GVLTADEQQQLEEALNELLEEVRANPQQILASDAEDIHS---------WVEG 90
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases.
Length = 578
Score = 25.5 bits (56), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 82 SLQRDSIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREI 120
SL D ++ W E+++ EM D LQ S L+EI
Sbjct: 432 SLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEI 470
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,070,863
Number of extensions: 192942
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 39
Length of query: 184
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,092,969
Effective search space: 392925024
Effective search space used: 392925024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)