RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.754_1
         (184 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
          Length = 76

 Score = 28.5 bits (63), Expect = 0.62
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 97  EKKSMEMLD-SLRVYLQDRSPLREIHKYFE 125
           EK++++ L  SL++Y  D +P   I    E
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATME 47


>1p80_A Catalase HPII; beta barrel, channel, variant,
           oxidoreductase; HET: HEM; 1.65A {Escherichia coli}
           (A:125-581)
          Length = 457

 Score = 27.9 bits (61), Expect = 0.96
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 97  EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156
            K   ++LD  ++  ++  P++ + K   NR   N+  + +    F        ++ T D
Sbjct: 223 FKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENE-QAAFHPGHIVPGLDFTND 281


>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
           {Saccharomyces cerevisiae} (A:53-488)
          Length = 436

 Score = 27.5 bits (60), Expect = 1.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 94  ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
              +K    + D  +V+ Q + PLR + K   N    N+  Q
Sbjct: 218 RDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQ 259


>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase;
           HET: HDD HEM; 1.75A {Neurospora crassa} (A:68-531)
          Length = 464

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 97  EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLD 156
            K   ++LD+ +++ +D  P+R I +   NR    +  Q +  + F  S     I  + D
Sbjct: 223 HKFDFDILDATKIWPEDLVPVRYIGEMELNRNPDEFFPQTE-QIAFCTSHVVNGIGFSDD 281


>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
           BI-functional enzyme, calcium, cytoplasm, dioxygenase,
           fatty acid biosynthesis; HET: HEM; 3.51A {Plexaura
           homomalla} (A:65-339)
          Length = 275

 Score = 25.6 bits (55), Expect = 3.9
 Identities = 2/37 (5%), Positives = 11/37 (29%)

Query: 97  EKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYD 133
              +  +  +  ++ ++  P  ++ K           
Sbjct: 216 PDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDV 252


>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl
           coenzyme A, isocitrate lyase, persistence, GLCB,
           structural genomics, PSI; 2.10A {Mycobacterium
           tuberculosis} (A:1-579)
          Length = 579

 Score = 25.3 bits (55), Expect = 5.5
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 118 REIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEITLDHYPISPEIAFDLEHITGITKV 177
            ++     ++ T   +     G  +  +       + L ++ +  EI  D E   G T  
Sbjct: 198 GQLVVALPDKSTGLANPGQFAG--YTGAAESPT-SVLLINHGLHIEILIDPESQVGTTDR 254

Query: 178 VQVIH 182
             V  
Sbjct: 255 AGVKD 259


>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide
           excision repair, xeroderma pigmentosum, cytoplasm, DNA
           repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A*
           3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 2b5n_A (A:554-692)
          Length = 139

 Score = 24.8 bits (54), Expect = 7.9
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 84  QRDSIRLLWVESLEKKSMEMLDS 106
              S R+L + S E    EML  
Sbjct: 27  TDISARILKLPSFELLHKEMLGG 49


>2fgy_A Carboxysome shell polypeptide; beta class of carbonic
           anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus}
           (A:176-420)
          Length = 245

 Score = 24.8 bits (54), Expect = 8.6
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 104 LDSLRVYLQDRSPLREIHKYFEN----RQTQNYDKQ 135
            D++RV++ D       ++Y +N     QT +    
Sbjct: 152 TDAIRVHIPDSKGFLNPYRYVDNTVTYAQTLHLAPD 187


>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
           {Exiguobacterium oxidotolerans} (A:53-491)
          Length = 439

 Score = 24.4 bits (52), Expect = 9.5
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 94  ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGK 137
             +E    + LD+ + + +D  P + +     N+   NY  + +
Sbjct: 216 ADVENFDFDPLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETE 259


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,423,788
Number of extensions: 64846
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 25
Length of query: 184
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 101
Effective length of database: 2,150,234
Effective search space: 217173634
Effective search space used: 217173634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)