RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.754_1
(184 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 97 EKKSMEMLD-SLRVYLQDRSPLREIHKYFE 125
EK++++ L SL++Y D +P I E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.4 bits (83), Expect = 0.003
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 75 VSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSL-RVYLQD-RSPLREIHKYFENRQTQNY 132
++Q D+L+ + +SIR W E ++K ++ LD+ +V Q+ R ++ + + RQ++
Sbjct: 74 IAQADRLTQEPESIR-KWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 133 DKQGKI 138
+K KI
Sbjct: 132 EKN-KI 136
>1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase,
glycoprotein; HET: NDG NAG; 2.25A {Bos taurus} SCOP:
c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A
Length = 279
Score = 29.1 bits (65), Expect = 0.58
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 27/120 (22%)
Query: 47 NFLSL--QEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEML 104
FL+ QE+ E K L+ KK +++V D + DS + S + K L
Sbjct: 173 IFLADINQERGVNESYKKNLMALKK-FVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPL 231
Query: 105 DSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIE-IEITLDHYPISPE 163
+Y QDR +GL + G++ + + DH +S E
Sbjct: 232 QESTLYTQDR-----------------------LGLKAMDKAGQLVFLALEGDHLQLSEE 268
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein,
purine regulation, YJGF/YER057C family, gene regulation;
1.70A {Bacillus subtilis} SCOP: d.79.1.1
Length = 124
Score = 28.1 bits (62), Expect = 1.4
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 100 SMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQGKIEIEIT 154
S E + V++ D E+++ + + + + + L +EIE+
Sbjct: 66 SFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVI 120
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, cell cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A*
Length = 301
Score = 26.7 bits (58), Expect = 3.4
Identities = 9/74 (12%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 55 QQLEEEKPRLLREKKPYIIVVSQEDKLSL-QRDSIRLLWVESLEKKSMEMLDSLRVYLQD 113
+ L+ + + K + V+++ D L+L +R+ ++ ++ +E+ ++++ +
Sbjct: 142 KPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 201
Query: 114 RSPLREIHKYFENR 127
+E + +
Sbjct: 202 DEDFKEQTRLLKAS 215
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 26.4 bits (58), Expect = 4.0
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
A +P++ + ++ YI +++ D +K
Sbjct: 237 AGSNPDYCQQDLFEAIQNGNYP---SWTVYIQTMTERDA----------------KKLPF 277
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
+ D +V+ Q + PLR + K N N+ Q
Sbjct: 278 SVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQ 311
>3ej6_A Catalase-3; heme, hydrogen peroxide, iron, metal-binding,
oxidoreductase, peroxidase; HET: NAG HEM; 2.30A
{Neurospora crassa}
Length = 688
Score = 26.0 bits (57), Expect = 4.8
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
A ++ +F +E + + ++ ++ +
Sbjct: 254 AGKNADFHRQDLWDAIESGNAP---SWELAVQLIDEDK----------------AQAYGF 294
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
++LD + ++ +PL+ + + NR NY +
Sbjct: 295 DLLDPTKFLPEEFAPLQVLGEMTLNRNPMNYFAE 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 25.3 bits (55), Expect = 7.6
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 34/109 (31%)
Query: 87 SIRLLWVESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGKIGLIFLRSQ 146
S R L +L S+E L V P +F +Q ++ F +
Sbjct: 5 STRPL---TLSHGSLE--HVLLV------P---TASFF--IASQLQEQ-------FNKIL 41
Query: 147 GKIEIEITLDHYPISP-EIAFD-LEHI---------TGITKVVQVIHNE 184
+ D P +P E+ L ++ +V+ + E
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductase; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 25.3 bits (55), Expect = 8.6
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 19/94 (20%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
+ DP+ + + K I V+ +ED +K
Sbjct: 235 RKHDPDSNQRDLFDAIARGDYP---KWKLSIQVMPEED----------------AKKYRF 275
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQ 135
D +++ PL E+ N+ +NY +
Sbjct: 276 HPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAE 309
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 25.4 bits (55), Expect = 8.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 94 ESLEKKSMEMLDSLRVYLQDRSPLREIHKYFENRQ 128
E + +DSLR++ + L E+ K +NR
Sbjct: 268 EEIAVHYQIAMDSLRLFGSKAAALIELTKQLQNRS 302
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 25.2 bits (54), Expect = 8.7
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 49 LSLQEQQQLE-EEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSMEMLDSL 107
+SL+E +LE E RL +EK+ +IV + + D W+ + ++L +
Sbjct: 5 VSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDV 64
Query: 108 RVYLQDRSPLREIHKYF 124
R + P Y+
Sbjct: 65 RSFNLQEGPSGYTSCYY 81
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 25.3 bits (55), Expect = 9.6
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 42 AEEDPNFLSLQEQQQLEEEKPRLLREKKPYIIVVSQEDKLSLQRDSIRLLWVESLEKKSM 101
+D N S Q +E E ++ V+ D + D
Sbjct: 235 QGKDFNHASNDTFQAIENGDFP---EWDLFVQVLDPADVENFDFD--------------- 276
Query: 102 EMLDSLRVYLQDRSPLREIHKYFENRQTQNYDKQGK 137
LD+ + + +D P + + N+ NY + +
Sbjct: 277 -PLDATKDWFEDVIPFQHVGTMTLNKNVDNYFAETE 311
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,627,850
Number of extensions: 76439
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 43
Length of query: 184
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 97
Effective length of database: 3,584,002
Effective search space: 347648194
Effective search space used: 347648194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)