RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.759_1
         (58 letters)



>d1lnsa2 b.18.1.13 (A:551-763) X-Prolyl dipeptidyl aminopeptidase
          PepX {Lactococcus lactis [TaxId: 1358]}
          Length = 213

 Score = 25.0 bits (54), Expect = 2.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 27 SPTPTDFKNHYPDEKFA 43
          + +   F N+Y DE F 
Sbjct: 14 AVSFAQFDNNYDDETFK 30


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 23.6 bits (50), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 9   LIRRTTGEIEWQEVYI 24
           LI + TG I+  EV++
Sbjct: 100 LIHKDTGLIKEDEVFL 115


>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
          4530]}
          Length = 122

 Score = 22.5 bits (48), Expect = 9.6
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 1  MAKDIAALLIRRTTGEIEWQE---VYIEFSPTPTDFKNHY 37
          + K I  LL  +    +E+ +   VY E   +P  +   Y
Sbjct: 26 LLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRY 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 238,173
Number of extensions: 8799
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 58
Length of database: 2,407,596
Length adjustment: 28
Effective length of query: 30
Effective length of database: 2,023,156
Effective search space: 60694680
Effective search space used: 60694680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)