Query         537021.9.peg.786_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 01:03:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_786.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam09668 Asp_protease Asparty  18.2      99  0.0025   14.7   3.0   20    2-21     21-40  (124)
  2 TIGR01599 PYST-A Plasmodium yo  15.2      73  0.0019   15.3   1.1   14    8-21    191-204 (213)
  3 pfam02330 MAM33 Mitochondrial   14.5 1.2E+02  0.0031   14.2   2.1   14   19-32     41-54  (203)
  4 pfam10107 Endonuc_Holl Endonuc  13.3      77   0.002   15.2   0.7   19    3-21    114-133 (153)
  5 pfam11518 DUF3221 Protein of u  12.3   1E+02  0.0027   14.6   1.2   12   22-33     71-82  (99)
  6 TIGR02194 GlrX_NrdH Glutaredox  11.2      45  0.0011   16.4  -1.0   19    1-19     10-30  (72)
  7 TIGR02918 TIGR02918 conserved   10.9 1.6E+02  0.0042   13.6   2.1   26    7-32     69-108 (511)
  8 TIGR02623 G1P_cyt_trans glucos  10.5 1.1E+02  0.0029   14.4   0.8   14   22-35     55-68  (256)
  9 COG3592 Uncharacterized conser   8.1 2.1E+02  0.0054   13.0   1.5   14   20-33      9-22  (74)
 10 KOG0095 consensus                7.4 2.3E+02  0.0059   12.9   3.1   22   13-34     42-63  (213)

No 1  
>pfam09668 Asp_protease Aspartyl protease. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover.
Probab=18.20  E-value=99  Score=14.69  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=15.5

Q ss_pred             CEEEEEEEEEEEEEEEEEEE
Q ss_conf             02799999786105875311
Q 537021.9.peg.7    2 QCKMVFLDVKVAGYQIKKKE   21 (38)
Q Consensus         2 qckmvfldvkvagyqikkke   21 (38)
                      +..|.|.++++.|..+|---
T Consensus        21 ~v~MLyi~~~iNG~~vkAfV   40 (124)
T pfam09668        21 RVTMLYINCEVNGVPVKAFV   40 (124)
T ss_pred             EEEEEEEEEEECCEEEEEEE
T ss_conf             67799999999999999999


No 2  
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A; InterPro: IPR006486    A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum)..
Probab=15.25  E-value=73  Score=15.34  Aligned_cols=14  Identities=43%  Similarity=0.750  Sum_probs=11.4

Q ss_pred             EEEEEEEEEEEEEE
Q ss_conf             99786105875311
Q 537021.9.peg.7    8 LDVKVAGYQIKKKE   21 (38)
Q Consensus         8 ldvkvagyqikkke   21 (38)
                      +=|-.+||-|||++
T Consensus       191 mfvnLsGf~IKk~d  204 (213)
T TIGR01599       191 MFVNLSGFIIKKKD  204 (213)
T ss_pred             EEEEECCEEEECCC
T ss_conf             01100010687056


No 3  
>pfam02330 MAM33 Mitochondrial glycoprotein. This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q. It is thought to be involved in mitochondrial oxidative phosphorylation and in nucleus-mitochondrion interactions.
Probab=14.45  E-value=1.2e+02  Score=14.23  Aligned_cols=14  Identities=43%  Similarity=0.686  Sum_probs=11.0

Q ss_pred             EEECCCCEEEEEEE
Q ss_conf             31137637899975
Q 537021.9.peg.7   19 KKECKGEKIKVFFA   32 (38)
Q Consensus        19 kkeckgekikvffa   32 (38)
                      .|+..||+|+|+|.
T Consensus        41 tR~~g~E~I~V~F~   54 (203)
T pfam02330        41 TRKVGGEKIHVTFN   54 (203)
T ss_pred             EEECCCCEEEEEEE
T ss_conf             99539937999997


No 4  
>pfam10107 Endonuc_Holl Endonuclease related to archaeal Holliday junction resolvase. This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=13.28  E-value=77  Score=15.24  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=12.7

Q ss_pred             EEEEEEEEEEEEE-EEEEEE
Q ss_conf             2799999786105-875311
Q 537021.9.peg.7    3 CKMVFLDVKVAGY-QIKKKE   21 (38)
Q Consensus         3 ckmvfldvkvagy-qikkke   21 (38)
                      ++.+|+|||..+. |..+++
T Consensus       114 ~~IvfiEVKsGksa~Lt~~q  133 (153)
T pfam10107       114 REIVFVEVKTGKSARLTERE  133 (153)
T ss_pred             CEEEEEEECCCCCCCCCHHH
T ss_conf             44999996458642458778


No 5  
>pfam11518 DUF3221 Protein of unknown function (DUF3221). This family of proteins with unknown function appears to be restricted to Bacillus. Some members in this family of proteins are annotated as YobA however this cannot be confirmed. YobA is a protein with unknown function.
Probab=12.29  E-value=1e+02  Score=14.57  Aligned_cols=12  Identities=42%  Similarity=0.786  Sum_probs=8.2

Q ss_pred             CCCCEEEEEEEE
Q ss_conf             376378999751
Q 537021.9.peg.7   22 CKGEKIKVFFAD   33 (38)
Q Consensus        22 ckgekikvffad   33 (38)
                      -.|.||||+|..
T Consensus        71 k~G~KIKVW~s~   82 (99)
T pfam11518        71 KVGQKIKVWYSQ   82 (99)
T ss_pred             HCCCEEEEEHHH
T ss_conf             058779983132


No 6  
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=11.16  E-value=45  Score=16.40  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=12.1

Q ss_pred             CCEEEE--EEEEEEEEEEEEE
Q ss_conf             902799--9997861058753
Q 537021.9.peg.7    1 LQCKMV--FLDVKVAGYQIKK   19 (38)
Q Consensus         1 lqckmv--fldvkvagyqikk   19 (38)
                      .||||+  ||+-.-..||+.-
T Consensus        10 vQCkmTKk~L~~~~i~Fe~in   30 (72)
T TIGR02194        10 VQCKMTKKALEEHGIAFEEIN   30 (72)
T ss_pred             CCCCHHHHHHHHCCCCEEEEE
T ss_conf             052157766763799615763


No 7  
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267   Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=10.90  E-value=1.6e+02  Score=13.61  Aligned_cols=26  Identities=42%  Similarity=0.890  Sum_probs=20.3

Q ss_pred             EEEEEEE-------------EEEEEEEEC-CCCEEEEEEE
Q ss_conf             9997861-------------058753113-7637899975
Q 537021.9.peg.7    7 FLDVKVA-------------GYQIKKKEC-KGEKIKVFFA   32 (38)
Q Consensus         7 fldvkva-------------gyqikkkec-kgekikvffa   32 (38)
                      |-|+|.|             +..+.+.|- +|--+++||.
T Consensus        69 FTDiKIAPTtYTvd~l~~~l~~~~~~~E~vnGK~~~~ff~  108 (511)
T TIGR02918        69 FTDIKIAPTTYTVDDLEKELGLEITRREKVNGKVVKLFFN  108 (511)
T ss_pred             CCCCEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEEEE
T ss_conf             4653052454407898975188540351006608999998


No 8  
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446    Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=10.47  E-value=1.1e+02  Score=14.42  Aligned_cols=14  Identities=43%  Similarity=0.710  Sum_probs=11.1

Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             37637899975101
Q 537021.9.peg.7   22 CKGEKIKVFFADFT   35 (38)
Q Consensus        22 ckgekikvffadft   35 (38)
                      -||.-||-||+.+.
T Consensus        55 YkGy~IKeyF~NY~   68 (256)
T TIGR02623        55 YKGYVIKEYFANYF   68 (256)
T ss_pred             CCCCEEEEECCCCE
T ss_conf             43322010010632


No 9  
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=8.10  E-value=2.1e+02  Score=13.04  Aligned_cols=14  Identities=36%  Similarity=0.926  Sum_probs=10.7

Q ss_pred             EECCCCEEEEEEEE
Q ss_conf             11376378999751
Q 537021.9.peg.7   20 KECKGEKIKVFFAD   33 (38)
Q Consensus        20 keckgekikvffad   33 (38)
                      +.-+||||.++|+.
T Consensus         9 r~y~Gekidi~fn~   22 (74)
T COG3592           9 RKYRGEKIDIYFNT   22 (74)
T ss_pred             CEECCCEEEEEECC
T ss_conf             13026357887231


No 10 
>KOG0095 consensus
Probab=7.45  E-value=2.3e+02  Score=12.87  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=17.6

Q ss_pred             EEEEEEEEECCCCEEEEEEEEE
Q ss_conf             1058753113763789997510
Q 537021.9.peg.7   13 AGYQIKKKECKGEKIKVFFADF   34 (38)
Q Consensus        13 agyqikkkeckgekikvffadf   34 (38)
                      .++-||.-|..|||||.-.-|-
T Consensus        42 vdfmiktvev~gekiklqiwdt   63 (213)
T KOG0095          42 VDFMIKTVEVNGEKIKLQIWDT   63 (213)
T ss_pred             EEEEEEEEEECCEEEEEEEEEC
T ss_conf             3379999998780899998413


Done!