Query 537021.9.peg.786_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:43:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_786.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1kxl_A Cell division control p 14.8 74 0.0031 14.2 2.8 28 10-37 28-55 (199) 2 2jqo_A Hypothetical protein YO 12.3 75 0.0032 14.2 1.6 12 23-34 73-84 (108) 3 1x88_A Kinesin-like protein KI 11.2 50 0.0021 15.1 0.4 11 19-29 2-12 (359) 4 2d9t_A Tudor domain-containing 9.1 1.2E+02 0.0049 13.3 2.2 13 23-35 37-49 (78) 5 1g5v_A SurviVal motor neuron p 5.2 1.9E+02 0.008 12.2 2.3 20 17-36 32-51 (88) 6 1hul_A Interleukin-5; cytokine 4.2 1.3E+02 0.0053 13.1 -0.4 13 17-29 77-89 (108) 7 2zx2_A CSL3; lectin, rhamnose, 4.0 2.3E+02 0.0099 11.7 2.8 19 19-37 112-130 (195) 8 2hx6_A Ribonuclease, GP61.9; a 3.7 1.9E+02 0.008 12.2 0.2 11 1-11 129-139 (153) 9 1wjv_A Cell growth regulating 3.1 2.1E+02 0.0087 12.0 -0.2 20 2-21 5-24 (79) 10 1i25_A Huwentoxin-II, HWTX-II; 2.9 2.8E+02 0.012 11.4 0.3 7 18-24 19-25 (37) No 1 >1kxl_A Cell division control protein 13; DNA-binding domain, telomere, single-stranded DNA, OB fold, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.3 PDB: 1s40_A Probab=14.80 E-value=74 Score=14.24 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=22.5 Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEECC Q ss_conf 7861058753113763789997510115 Q 537021.9.peg.7 10 VKVAGYQIKKKECKGEKIKVFFADFTRK 37 (38) Q Consensus 10 vkvagyqikkkeckgekikvffadftrk 37 (38) +.+-|+-+--+--+|..+++-|.|||.. T Consensus 28 ~t~fglLVs~~~~~~~~~~fvFTDFT~N 55 (199) T 1kxl_A 28 ITMFGMLVSCSFDKPAFISFVFSDFTKN 55 (199) T ss_dssp EEECCCCCEEECCCTTEEEEEECCSSCC T ss_pred EEEEEEEEEEECCCCCEEEEEEEECCCC T ss_conf 4777867886048995799998434668 No 2 >2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} Probab=12.28 E-value=75 Score=14.21 Aligned_cols=12 Identities=58% Similarity=0.924 Sum_probs=9.4 Q ss_pred CCCEEEEEEEEE Q ss_conf 763789997510 Q 537021.9.peg.7 23 KGEKIKVFFADF 34 (38) Q Consensus 23 kgekikvffadf 34 (38) .|.||||+|... T Consensus 73 ~G~KIKVW~S~i 84 (108) T 2jqo_A 73 RGEKIKVWFHTR 84 (108) T ss_dssp TTEEEEEEEEEE T ss_pred CCCEEEEEHHHH T ss_conf 688899855744 No 3 >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* 2fky_A* 2fl2_A* 2fl6_A* 2ieh_A* 2q2y_A* 2q2z_A* ... Probab=11.22 E-value=50 Score=15.06 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=3.9 Q ss_pred EEECCCCEEEE Q ss_conf 31137637899 Q 537021.9.peg.7 19 KKECKGEKIKV 29 (38) Q Consensus 19 kkeckgekikv 29 (38) |+|-||+.|+| T Consensus 2 ~~~~~~~nIkV 12 (359) T 1x88_A 2 KKEEKGKNIQV 12 (359) T ss_dssp -------CCEE T ss_pred CCCCCCCCEEE T ss_conf 75569996899 No 4 >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Probab=9.09 E-value=1.2e+02 Score=13.25 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.5 Q ss_pred CCCEEEEEEEEEE Q ss_conf 7637899975101 Q 537021.9.peg.7 23 KGEKIKVFFADFT 35 (38) Q Consensus 23 kgekikvffadft 35 (38) .+.++.|||-||- T Consensus 37 ~~~~~~V~fvDYG 49 (78) T 2d9t_A 37 SGMTAVVKFTDYG 49 (78) T ss_dssp SSSEEEEEETTTT T ss_pred CCCEEEEEEEECC T ss_conf 8998999999089 No 5 >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Probab=5.17 E-value=1.9e+02 Score=12.19 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=13.6 Q ss_pred EEEEECCCCEEEEEEEEEEC Q ss_conf 75311376378999751011 Q 537021.9.peg.7 17 IKKKECKGEKIKVFFADFTR 36 (38) Q Consensus 17 ikkkeckgekikvffadftr 36 (38) |..-...+....|||-||-. T Consensus 32 I~~i~~~~~~~~V~fvDYGn 51 (88) T 1g5v_A 32 IASIDFKRETCVVVYTGYGN 51 (88) T ss_dssp EEEEETTTTEEEEEETTTCC T ss_pred EEEECCCCCEEEEEEEECCC T ss_conf 99853789969999992699 No 6 >1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 3b5k_A Probab=4.18 E-value=1.3e+02 Score=13.08 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=9.8 Q ss_pred EEEEECCCCEEEE Q ss_conf 7531137637899 Q 537021.9.peg.7 17 IKKKECKGEKIKV 29 (38) Q Consensus 17 ikkkeckgekikv 29 (38) ..||+|.||.-+| T Consensus 77 ~QkkkCg~eRr~V 89 (108) T 1hul_A 77 GQKKKCGEERRRV 89 (108) T ss_dssp HHHHTTSSEEEEH T ss_pred HHHHHCCHHHHHH T ss_conf 8886443057639 No 7 >2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Probab=4.05 E-value=2.3e+02 Score=11.74 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=11.5 Q ss_pred EEECCCCEEEEEEEEEECC Q ss_conf 3113763789997510115 Q 537021.9.peg.7 19 KKECKGEKIKVFFADFTRK 37 (38) Q Consensus 19 kkeckgekikvffadftrk 37 (38) .-.|.+.+|.+.+|.|-|. T Consensus 112 ~L~C~~~~I~I~~A~YGR~ 130 (195) T 2zx2_A 112 QLLCDRGEIRIQRANYGRR 130 (195) T ss_dssp EEECSSSCEEEEEEEEEBS T ss_pred EEEEECCEEEEEEEEECCC T ss_conf 7276089789988772574 No 8 >2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4} Probab=3.71 E-value=1.9e+02 Score=12.19 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=6.6 Q ss_pred CCEEEEEEEEE Q ss_conf 90279999978 Q 537021.9.peg.7 1 LQCKMVFLDVK 11 (38) Q Consensus 1 lqckmvfldvk 11 (38) |||.|.+..-+ T Consensus 129 L~CRMaivNsr 139 (153) T 2hx6_A 129 LQCRMAIINSR 139 (153) T ss_dssp EEEEEEEECCS T ss_pred CEEEEEEEECC T ss_conf 35889997055 No 9 >1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2 Probab=3.06 E-value=2.1e+02 Score=12.01 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.1 Q ss_pred CEEEEEEEEEEEEEEEEEEE Q ss_conf 02799999786105875311 Q 537021.9.peg.7 2 QCKMVFLDVKVAGYQIKKKE 21 (38) Q Consensus 2 qckmvfldvkvagyqikkke 21 (38) .|+||+..-..-|--+||+. T Consensus 5 ~~~MV~F~C~~CgdtlKK~k 24 (79) T 1wjv_A 5 SSGMVFFTCNACGESVKKIQ 24 (79) T ss_dssp SCCCCEEEESSSCCEEETTH T ss_pred CCEEEEEECCCCCCEECCCC T ss_conf 66325888887878712201 No 10 >1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2 Probab=2.89 E-value=2.8e+02 Score=11.38 Aligned_cols=7 Identities=86% Similarity=1.526 Sum_probs=0.0 Q ss_pred EEEECCC Q ss_conf 5311376 Q 537021.9.peg.7 18 KKKECKG 24 (38) Q Consensus 18 kkkeckg 24 (38) |.|+|+| T Consensus 19 k~kk~kg 25 (37) T 1i25_A 19 KKKKCKG 25 (37) T ss_dssp BCCCCCT T ss_pred CCCCCCC T ss_conf 7666887 Done!