HHsearch alignment for GI: peg_788 and conserved domain: TIGR03434
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=97.76 E-value=0.0026 Score=38.00 Aligned_cols=169 Identities=18% Similarity=0.154 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCC--------C-CCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--CC
Q ss_conf 366655542264103466542001--------1-1112----2233221011124310000012001100277542--11
Q 537021.9.peg.7 80 YQFIANRLDFIPDVIKVLPFVSGQ--------A-FVSG----LSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSN--DF 144 (270)
Q Consensus 80 ~~~~~~~l~~~~~V~~~~p~i~~~--------~-~i~~----~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~--~~ 144 (270)
T Consensus 478 ~~~l~~~l~~~pgV~~vs~s~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~y~~~~gi~--ll~Gr~f~~~d~ 555 (803)
T TIGR03434 478 YRRLLERLRALPGVESAALASSLPLGGNGWSTGVTIEGRPPPPPGEEPLALYRRVSPGYFETMGIP--LLRGRDFTERDT 555 (803)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECHHHHHHHCCE--EECCCCCCCHHC
T ss_conf 999999985589843898762577668888851687782478877561256665478489880980--524888980012
Q ss_pred CC-CCCCCCHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE---EC-CCCCCCEEEEEHHHHHH
Q ss_conf 11-23421013454554---2133320231134421000122110000122102331---02-44555168985488999
Q 537021.9.peg.7 145 DR-GKGVIIGKDLARNL---GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRM---RF-PDYDNGMVYMSLQEAQL 216 (270)
Q Consensus 145 ~~-~~~iiiG~~lA~~L---~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~s---g~-~~~D~~~v~~~l~~~q~ 216 (270)
T Consensus 556 ~~~~~~~iine~~a~~l~~~~~~iG~~~~~~~~-----------~~~~~~IvGVv~D~~~~s~~~~~~p~v~~~~~---- 620 (803)
T TIGR03434 556 AGSPPVAIVNEAFARRYFPGEDPIGKRIRLGGD-----------DGPWYEIVGVVGDVRYAGLDEPPRPEVYLPYA---- 620 (803)
T ss_pred CCCCCEEEECHHHHHHHCCCCCCCCCEEEECCC-----------CCCEEEEEEEECCCCCCCCCCCCCCEEEEECC----
T ss_conf 689837998799999747988988778985588-----------99705999998875246777888866999713----
Q ss_pred HCCCCCCEEEEEEEEC-CHHH-HHHHHHHHHHHCCC-C-EEEEEHHHHHHHHHHH
Q ss_conf 7189987107999956-9889-99999999986199-8-5999689988989998
Q 537021.9.peg.7 217 YFNLENAVSGIEVFVK-DPDA-IEKTHENIVRILGN-G-VVVIDWQQRYQIFFSC 267 (270)
Q Consensus 217 l~~~~~~~~~i~i~l~-d~~~-~~~~~~~i~~~l~~-~-~~v~~w~e~~~~lf~a 267 (270)
T Consensus 621 --~~~~~~~~i~v~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~~~~~~~~~ 673 (803)
T TIGR03434 621 --QSPSRGMTLVVRTAGDPAALAAAVRRAVRAIDPNLPVYNVRTMEEQVDDSLAQ 673 (803)
T ss_pred --CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf --58888659999858999999999999999868999840103099999999887