Query 537021.9.peg.788_1
Match_columns 270
No_of_seqs 139 out of 2893
Neff 9.1
Searched_HMMs 33803
Date Wed May 25 07:47:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_788.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ftj_A MACB, macrolide export 99.7 1.1E-17 3.2E-22 119.2 6.8 196 58-269 5-223 (226)
2 >3is6_A Putative permease prot 99.3 2E-13 6E-18 95.0 -0.0 164 78-253 39-208 (244)
3 >1tmo_A TMAO reductase, trimet 56.2 7.2 0.00021 18.1 2.2 32 147-178 55-86 (122)
4 >1kqf_A FDH-N, formate dehydro 55.6 6.6 0.0002 18.3 1.9 34 145-178 74-107 (174)
5 >2ki8_A Tungsten formylmethano 54.9 7.2 0.00021 18.1 2.0 33 145-177 50-82 (133)
6 >3i9v_3 NADH-quinone oxidoredu 53.2 7.1 0.00021 18.2 1.7 33 146-178 33-65 (104)
7 >1q16_A Respiratory nitrate re 52.3 7.5 0.00022 18.0 1.7 32 147-178 45-76 (158)
8 >2e7z_A Acetylene hydratase AH 51.8 8.6 0.00026 17.7 2.0 33 146-178 41-73 (145)
9 >2nap_A Protein (periplasmic n 51.7 9.6 0.00028 17.4 2.2 33 146-178 36-68 (120)
10 >2ivf_A Ethylbenzene dehydroge 50.7 8.7 0.00026 17.7 1.9 32 147-178 38-69 (143)
11 >1ogy_A Periplasmic nitrate re 50.6 9.2 0.00027 17.5 2.0 33 146-178 36-68 (122)
12 >2nya_A Periplasmic nitrate re 49.7 8.8 0.00026 17.6 1.8 32 147-178 37-68 (122)
13 >2vpz_A Thiosulfate reductase; 46.3 12 0.00035 16.9 2.0 32 147-178 42-73 (161)
14 >1ti6_A Pyrogallol hydroxytran 44.7 11 0.00032 17.1 1.6 32 147-178 53-84 (159)
15 >1g8k_A Arsenite oxidase; moly 44.5 13 0.00037 16.7 1.9 32 147-178 45-76 (145)
16 >2iv2_X Formate dehydrogenase 44.5 13 0.00038 16.7 1.9 32 147-178 40-71 (124)
17 >1eu1_A Dimethyl sulfoxide red 43.4 16 0.00046 16.2 2.2 32 147-178 47-78 (161)
18 >1h0h_A Formate dehydrogenase 40.7 15 0.00046 16.3 1.9 34 145-178 68-101 (168)
19 >1mvf_D MAZE protein, PEMI-lik 33.3 21 0.00061 15.5 1.5 26 152-177 1-26 (66)
20 >1yle_A Arginine N-succinyltra 32.8 25 0.00075 15.0 1.9 22 149-170 316-337 (342)
21 >3c5e_A Acyl-coenzyme A synthe 30.0 24 0.00072 15.1 1.4 28 151-178 10-37 (123)
22 >1grj_A GREA protein; transcri 27.0 38 0.0011 14.0 2.0 28 149-176 36-64 (75)
23 >2pn0_A Prokaryotic transcript 26.0 40 0.0012 13.9 2.2 37 150-195 37-74 (87)
24 >3bmb_A Regulator of nucleosid 22.3 47 0.0014 13.5 2.6 38 149-195 36-74 (85)
25 >2cw5_A Bacterial fluorinating 20.6 43 0.0013 13.7 1.3 19 153-171 71-89 (89)
No 1
>>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans} (A:)
Probab=99.72 E-value=1.1e-17 Score=119.19 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=145.7
Q ss_pred HHHHHHCCCCCEEECCC---------CCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63111024530000000---------001213666555422641034665420011111222332210111243100000
Q 537021.9.peg.7 58 IKRVLGINGHVVIQQKY---------YPLVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSY 128 (270)
Q Consensus 58 ~~~i~~~~~~i~i~~~~---------~~~~~~~~~~~~l~~~~~V~~~~p~i~~~~~i~~~~~~~~~v~i~Gv~~~~~~~ 128 (270)
.+.+.++..++...... ......+...+.+++.|+|+.++|.+...+.+...+.....+.+.|++|+++..
T Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~pgV~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 84 (226)
T 3ftj_A 5 LENIRGIGTNTMTIFNGNGFGDRRSRHIQNLKISDANTLSKQSYIQSVTPNTSSSGILVVGNKSFTSANLYGIGEQYFDV 84 (226)
T ss_dssp TTTSTTSSSSEEEEEESSCTTCHHHHHSCCCBHHHHHHHHTSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEECTTHHHH
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEEEEECHHHHHH
T ss_conf 99999628978999807888987755538899999999856578858815751473687315431068999977678867
Q ss_pred CCCHHHHCCCCCCCCC---CCCCCCCCHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE---EC
Q ss_conf 1200110027754211---1123421013454554---2133320231134421000122110000122102331---02
Q 537021.9.peg.7 129 LQNSFSRFYGNVSNDF---DRGKGVIIGKDLARNL---GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRM---RF 199 (270)
Q Consensus 129 ~~~~~~~~~~~~~~~~---~~~~~iiiG~~lA~~L---~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~s---g~ 199 (270)
.... ...|...... ...+.++||+.+|++| +..+|++|.+- ...|+|+||++. +.
T Consensus 85 ~~~~--l~~Gr~~~~~d~~~~~~~vvI~~~~A~~lf~~~~~iG~~i~~~--------------~~~~~VvGV~~~~~~~~ 148 (226)
T 3ftj_A 85 EGLK--LKQGRLLTEDDVDQSNQVVVLDESAKKAIFANENPLGKTVIFN--------------KRPFRVIGVVSDQQLGG 148 (226)
T ss_dssp HTCC--EEEECCCCHHHHHHTCCEEEEEHHHHHHHHTTSCCTTCEEEET--------------TEEEEEEEEECCC----
T ss_pred CCCC--EECCCCCCHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEEC--------------CCCEEEEEEECCCCCCC
T ss_conf 0831--2004555844662577347717267777448878654246668--------------98509999976566778
Q ss_pred CCCCCCEEEEEHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHC-----CCCEEEEEHHHHHHHHHHHHC
Q ss_conf 4455516898548899971899871079999569889999999999861-----998599968998898999860
Q 537021.9.peg.7 200 PDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL-----GNGVVVIDWQQRYQIFFSCYE 269 (270)
Q Consensus 200 ~~~D~~~v~~~l~~~q~l~~~~~~~~~i~i~l~d~~~~~~~~~~i~~~l-----~~~~~v~~w~e~~~~lf~ai~ 269 (270)
...+...+|+|+.++++++...+.++.+.|+++++.+.+++.++|++.+ ..++.+.+|.+..+.+++.++
T Consensus 149 ~~~~~~~v~~p~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (226)
T 3ftj_A 149 FPGNSLNLYSPYSTVLNKITGGSRIGSITVKISDDVNSTVAEKSLTELLKSLHGKKDFFIMNSDTIKQTIENTTG 223 (226)
T ss_dssp ----CCEEEEEHHHHHHHTTCSSBCSEEEEEECTTSCHHHHHHHHHHHHHHHHSSCCEEEESHHHHHHHHHTSCC
T ss_pred CCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 788886599982798865247776517999986888999999999999998619888589769999999999998
No 2
>>3is6_A Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83} (A:)
Probab=99.31 E-value=2e-13 Score=94.96 Aligned_cols=164 Identities=11% Similarity=-0.023 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 21366655542264103466542001111-12223322101112431000001200110027754211112342101345
Q 537021.9.peg.7 78 VDYQFIANRLDFIPDVIKVLPFVSGQAFV-SGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDL 156 (270)
Q Consensus 78 ~~~~~~~~~l~~~~~V~~~~p~i~~~~~i-~~~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiG~~l 156 (270)
..++.+.+.+++.|+|+.++|+....+-. ...++....+.+.|++|++++.... ....|+.....+..+.|+||+.+
T Consensus 39 ~~~~~~~~l~~~~p~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~Gr~~~~~d~~~~vvi~~~~ 116 (244)
T 3is6_A 39 VSGGVAPAIQEEIPGVELATRTTLYGTSKXILEDNKTYETKTLLAEPAFLDXFGV--ELIAGVRDSALRDNXTCLISESL 116 (244)
T ss_dssp BCTTHHHHHHHHCTTEEEEEEEEEEEEEEEEETTTEEEEEEEEEECTHHHHHTTC--CEEEECGGGTTCSTTEEEEEHHH
T ss_pred CCHHHHHHHHHHCHHHHEEEEEEECCCCEEEECCCEEEEEEEEEECHHHHHHCCC--CEEECCCCHHHCCCCEEEECHHH
T ss_conf 6577999999878223203677304761377548757750069989528977597--25605811454389989989999
Q ss_pred HHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCEEEEEHHHHHHHCC---CCCCEEEEEEEE
Q ss_conf 4554-2133320231134421000122110000122102331024-4555168985488999718---998710799995
Q 537021.9.peg.7 157 ARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFP-DYDNGMVYMSLQEAQLYFN---LENAVSGIEVFV 231 (270)
Q Consensus 157 A~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~sg~~-~~D~~~v~~~l~~~q~l~~---~~~~~~~i~i~l 231 (270)
|+++ +..+|++|.+..+.+ .+.|+|+||++.... ...+..+++|+.+.+..+. ..+..+.+.+++
T Consensus 117 A~~~f~~~iG~~i~~~~~~~----------~~~~~VvGV~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~i~v~~ 186 (244)
T 3is6_A 117 ARKXGGDVLGKRLRPAESKS----------DRAITIGGVFEDLPHNSSIQADXLLPITWXPAESLNNWIGNDRYIAYVRL 186 (244)
T ss_dssp HHHTTSCCTTCEEEETTCCS----------SCCEEEEEEECCCCSSBSCCCSEEEEGGGSCHHHHTCCSSCCCBEEEEEE
T ss_pred HHHHCCCCCCCEEEECCCCC----------CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 99853655577798623578----------87419999947897567665339997523232245776678746999996
Q ss_pred CCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 6988999999999986199859
Q 537021.9.peg.7 232 KDPDAIEKTHENIVRILGNGVV 253 (270)
Q Consensus 232 ~d~~~~~~~~~~i~~~l~~~~~ 253 (270)
++..+.+++.++|++.+...+.
T Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~ 208 (244)
T 3is6_A 187 RPGVSPESLDEALLEXQKRHQD 208 (244)
T ss_dssp CTTCCGGGGHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8999999999999999988446
No 3
>>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} (A:652-757,A:802-817)
Probab=56.18 E-value=7.2 Score=18.14 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|.|...-|+++|++-||.|.|.++.+...
T Consensus 55 ~~~v~inp~dA~~lGI~dGD~V~V~s~~G~i~ 86 (122)
T 1tmo_A 55 REPVYISPVDAKARGIKDGDIVRVFNDRGQLL 86 (122)
T ss_dssp BCEEEECHHHHHHTTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98799899999976999999999986987999
No 4
>>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:842-1015)
Probab=55.64 E-value=6.6 Score=18.34 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 1123421013454554213332023113442100
Q 537021.9.peg.7 145 DRGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 145 ~~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
...+.+.|....|++||++-||.|.|.++.+...
T Consensus 74 ~~~~~v~inp~dA~~lGI~~GD~V~v~s~~G~~~ 107 (174)
T 1kqf_A 74 QPEQFVEISETLAAAKGINNGDRVTVSSKRGFIR 107 (174)
T ss_dssp SCSCEEEECHHHHHHHTCCTTCEEEEECSSCEEE
T ss_pred CCCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 9998799899999976999999999986998999
No 5
>>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} (A:1-133)
Probab=54.92 E-value=7.2 Score=18.15 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 112342101345455421333202311344210
Q 537021.9.peg.7 145 DRGKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 145 ~~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
...+.+.|..+.|++||++-||.|.|.++.+..
T Consensus 50 ~~~~~v~inp~dA~~~Gi~dGd~V~i~s~~G~v 82 (133)
T 2ki8_A 50 NAVNYAEINEEDWNALGLQEGDRVKVKTEFGEV 82 (133)
T ss_dssp HSSSEEEECHHHHHHHTCCTTCEEEEECSSCEE
T ss_pred CCCEEEEECHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf 756499999999988599999999998799689
No 6
>>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* (3:680-783)
Probab=53.24 E-value=7.1 Score=18.15 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 123421013454554213332023113442100
Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
....+.|...-|++||++-||.|.+.++.+...
T Consensus 33 ~~~~v~in~~dA~~lGi~dgd~V~v~s~~G~i~ 65 (104)
T 3i9v_3 33 ARAELWAHPETARAEALPEGAQVAVETPFGRVE 65 (104)
T ss_dssp TCCEEEECHHHHHHTTCCTTCEEEEEETTEEEE
T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 998799899999876999989999986988999
No 7
>>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:1071-1228)
Probab=52.29 E-value=7.5 Score=18.02 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+.|....|+++|++-||.|.|.++.+...
T Consensus 45 ~~~v~inp~dA~~lGI~dGD~V~v~s~~G~~~ 76 (158)
T 1q16_A 45 GPVVWLSEADAKDLGIADNDWIEVFNSNGALT 76 (158)
T ss_dssp SCEEEEEHHHHHHHTCCTTCEEEEEETTEEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98799899999874999899999984897999
No 8
>>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:583-727)
Probab=51.80 E-value=8.6 Score=17.69 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.5
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 123421013454554213332023113442100
Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
..+.|.|...-|++||++-||.|.+.++.+...
T Consensus 41 ~~~~v~inp~dA~~lGi~~Gd~V~v~s~~G~~~ 73 (145)
T 2e7z_A 41 PDPVALLHPKTAQSLGLPSGEWIWVETTHGRLK 73 (145)
T ss_dssp CSCEEEECHHHHHHHTCCTTSEEEEECSSCEEE
T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 998699899999876999999999984998999
No 9
>>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} (A:604-723)
Probab=51.73 E-value=9.6 Score=17.42 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 123421013454554213332023113442100
Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
..+.+.|...-|++||++-||.|.|.++.+...
T Consensus 36 ~~~~v~inp~dA~~lgi~~Gd~V~i~s~~G~~~ 68 (120)
T 2nap_A 36 PIAFVEINEEDAARTGIKHGDSVIVETRRDAME 68 (120)
T ss_dssp CSCCEEEEHHHHHHHTCCTTCEEEEEETTEEEE
T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEEECCEEEE
T ss_conf 997799899999875999979999991884899
No 10
>>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} (A:834-976)
Probab=50.75 E-value=8.7 Score=17.66 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|.|...-|++||++-||.|.+.++.+...
T Consensus 38 ~~~v~inp~dA~~lGI~~GD~V~v~s~~G~~~ 69 (143)
T 2ivf_A 38 QPVVHMNSKDAAELGIKDGDMAKLFNDFADCE 69 (143)
T ss_dssp SCEEEEEHHHHHHTTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98799899999876999899999980898999
No 11
>>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} (A:681-802)
Probab=50.60 E-value=9.2 Score=17.54 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 123421013454554213332023113442100
Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
..+.+.|...-|+++|++-||.|.+.++.+...
T Consensus 36 ~~~~v~i~p~dA~~~Gi~dGd~V~v~s~~G~~~ 68 (122)
T 1ogy_A 36 PGAVCFMHPEDARSRGLNRGSEVRVISRRGEIR 68 (122)
T ss_dssp CSCEEECCHHHHHHTTCCTTCEEEEECSSCEEE
T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCCEEE
T ss_conf 998799899999875999999999986993499
No 12
>>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12} (A:671-792)
Probab=49.68 E-value=8.8 Score=17.63 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+.|...-|++||++-||.|.|.++.+...
T Consensus 37 ~~~v~inp~dA~~lGi~dGd~V~v~s~~G~~~ 68 (122)
T 2nya_A 37 EAVLFIHPLDAKARDLRRGDKVKVVSRRGEVI 68 (122)
T ss_dssp SCEEECCHHHHHTTTCCTTCEEEEEETTEEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98899899999875999989999986986899
No 13
>>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* (A:605-765)
Probab=46.26 E-value=12 Score=16.93 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+.|....|++||++-||.|.+.++.+...
T Consensus 42 ~~~v~inp~dA~~~GI~~GD~V~v~s~~G~~~ 73 (161)
T 2vpz_A 42 ENEVWIHKEEAKRLGLKEGDYVMLVNQDGVKE 73 (161)
T ss_dssp SCEEECCHHHHHHTTCCTTCEEEEEETTCCEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEEECCCEEE
T ss_conf 98799899999876999899999990896199
No 14
>>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (A:717-875)
Probab=44.73 E-value=11 Score=17.12 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|-|...-|++||++-||.|.|.++.+...
T Consensus 53 ~~~v~inp~dA~~lGI~dGD~V~v~s~~G~~~ 84 (159)
T 1ti6_A 53 YWIMRVNSIDAEARGIKNGDLIRAYNDRGSVI 84 (159)
T ss_dssp EEEEEEEHHHHHHTTCCTTCEEEEEETTEEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 86589899999876999899999984896999
No 15
>>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} (A:681-825)
Probab=44.50 E-value=13 Score=16.75 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|.|...-|++||++-||.|.|.++.+...
T Consensus 45 ~~~v~inp~dA~~lGi~dGd~V~i~s~~G~~~ 76 (145)
T 1g8k_A 45 MAYIEMNPDDCKQLDVTGGDIVEVYNDFGSTF 76 (145)
T ss_dssp SCEEEECHHHHHHTTCCTTEEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98899899999876999999999984998999
No 16
>>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:566-689)
Probab=44.49 E-value=13 Score=16.69 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+.|...-|+++|++-||.|.+.++.+...
T Consensus 40 ~~~v~inp~dA~~~Gi~dGD~V~v~s~~G~~~ 71 (124)
T 2iv2_X 40 PGYAQINTEDAKRLGIEDEALVWVHSRKGKII 71 (124)
T ss_dssp SCEEEEEHHHHHHHTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 96799899999875999969999988987899
No 17
>>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:620-780)
Probab=43.45 E-value=16 Score=16.24 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+.|....|+++|++-||.|.|.++.+...
T Consensus 47 ~~~v~inp~dA~~~Gi~dGD~V~v~s~~G~~~ 78 (161)
T 1eu1_A 47 HEPCLINPADAAARGIADGDVLRVFNDRGQIL 78 (161)
T ss_dssp BCEEEECHHHHHTTTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 98699899999876999899999985997999
No 18
>>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} (A:810-977)
Probab=40.72 E-value=15 Score=16.26 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=28.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 1123421013454554213332023113442100
Q 537021.9.peg.7 145 DRGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 145 ~~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
...+.|.|...-|++||++-||.|.|.++.+...
T Consensus 68 ~~~~~i~inp~dA~~lGi~~GD~V~v~s~~G~~~ 101 (168)
T 1h0h_A 68 EPQMFCEMSEELATLRGIKNGDKVILESVRGKLW 101 (168)
T ss_dssp SCSCEEEECHHHHHHHTCCTTCEEEEEETTEEEE
T ss_pred CCCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 8998699899999875999899999984998999
No 19
>>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immune system; 1.65A {Escherichia coli} (D:17-82)
Probab=33.26 E-value=21 Score=15.54 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.4
Q ss_pred CHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 01345455421333202311344210
Q 537021.9.peg.7 152 IGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 152 iG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
|.+.+++.+++..||.+.+....+..
T Consensus 1 iP~~il~~l~l~~g~~vei~v~~g~i 26 (66)
T 1mvf_D 1 IPATLMQALNLNIDDEVKIDLVDGKL 26 (66)
T ss_dssp CCHHHHHHTTCCTTCBEEEEEETTEE
T ss_pred CCHHHHHHCCCCCCCEEEEEEECCEE
T ss_conf 08999998499989999999989999
No 20
>>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=32.80 E-value=25 Score=15.03 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHCCCCCEEEE
Q ss_conf 4210134545542133320231
Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINI 170 (270)
Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l 170 (270)
++.|....|+.|+++.||.|.+
T Consensus 316 ~~~l~~~~a~aL~v~~Gd~Vr~ 337 (342)
T 1yle_A 316 PVALSVEAAEALGVGEGASVRL 337 (342)
T ss_dssp CEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEECHHHHHHCCCCCCCEEEE
T ss_conf 6982899997649999998999
No 21
>>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor; middle-chain acyl-COA synthetase, xenobiotic/medium-chain fatty acid-COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* (A:76-198)
Probab=30.02 E-value=24 Score=15.14 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 1013454554213332023113442100
Q 537021.9.peg.7 151 IIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 151 iiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
-++..|.+++|++.||+|.++.++....
T Consensus 10 ~~a~~L~~~~gi~~gd~V~i~~~n~~e~ 37 (123)
T 3c5e_A 10 QAANVLSGACGLQRGDRVAVVLPRVPEW 37 (123)
T ss_dssp HHHHHHHTTTCCCTTCEEEEECCSCHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 9999988800979999999992896999
No 22
>>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:84-158)
Probab=26.96 E-value=38 Score=14.03 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCC
Q ss_conf 421013454554-2133320231134421
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGD 176 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~ 176 (270)
.|-.-+.++..| |.++||.+.+-.|.+.
T Consensus 36 ~IS~~SPlG~ALlG~~~Gd~v~~~~p~g~ 64 (75)
T 1grj_A 36 LISVNSPIARGLIGKEEDDVVVIKTPGGE 64 (75)
T ss_dssp EEESSSHHHHHHTTCBTTCEECC------
T ss_pred EECCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 30468989999728999998999839986
No 23
>>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} (A:55-141)
Probab=26.00 E-value=40 Score=13.92 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=25.6
Q ss_pred CCCHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 21013454554-21333202311344210001221100001221023
Q 537021.9.peg.7 150 VIIGKDLARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMF 195 (270)
Q Consensus 150 iiiG~~lA~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~ 195 (270)
+-+-+.+++.| |.++||.+.+-.|.+. .++++|..|-
T Consensus 37 iS~~SPlG~ALlG~~~Gd~v~~~~p~G~---------~~~~~I~~I~ 74 (87)
T 2pn0_A 37 ISILAPVGSALLGLAQGDEIEWPKPGGG---------VLRVRIVEVT 74 (87)
T ss_dssp EETTSTTHHHHTTCBTTCEEEEECTTSS---------EEEEEEEEEE
T ss_pred EEEECHHHHHHHCCCCCCEEEEECCCCC---------EEEEEEEEEE
T ss_conf 9887699999709988999999889998---------8999999998
No 24
>>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} (A:52-136)
Probab=22.27 E-value=47 Score=13.50 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 421013454554-21333202311344210001221100001221023
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMF 195 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~ 195 (270)
.|-+-+.++..| |.++||++.+-.|.+. .++++|..|-
T Consensus 36 ~IS~~SPlG~ALlG~~~Gd~v~~~~p~G~---------~~~~~I~~I~ 74 (85)
T 3bmb_A 36 QLSVMAPVGAALLGLRVGDSIHWELPGGV---------ATHLEVLELE 74 (85)
T ss_dssp EEETTSHHHHHHTTCBTTCEEEEEETTTE---------EEEEEEEEEE
T ss_pred EEECCCHHHHHHHCCCCCCEEEEECCCCC---------EEEEEEEEEE
T ss_conf 64226989999729978999999989998---------8999999999
No 25
>>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus} (A:167-255)
Probab=20.63 E-value=43 Score=13.72 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCCCEEEEC
Q ss_conf 1345455421333202311
Q 537021.9.peg.7 153 GKDLARNLGISIGDKINIL 171 (270)
Q Consensus 153 G~~lA~~L~l~vGD~i~l~ 171 (270)
.-..|+.|+++.||.++|+
T Consensus 71 ~G~aa~~lg~~~G~~v~i~ 89 (89)
T 2cw5_A 71 RGSAREALGLKEGXPVRLL 89 (89)
T ss_dssp TSCHHHHTTCCTTCEEEEC
T ss_pred CCCHHHHCCCCCCCEEEEC
T ss_conf 7697997799998999969
Done!