Query 537021.9.peg.788_1
Match_columns 270
No_of_seqs 139 out of 2893
Neff 9.1
Searched_HMMs 23785
Date Wed May 25 01:04:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_788.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ftj_A MACB, macrolide export 99.6 3.9E-15 1.6E-19 103.8 8.2 192 57-264 4-218 (226)
2 3is6_A Putative permease prote 97.6 5.3E-05 2.2E-09 46.4 4.5 149 87-248 48-203 (244)
3 1mvf_D MAZE protein, PEMI-like 51.2 5.1 0.00021 18.1 1.5 29 147-175 12-40 (82)
4 1yle_A Arginine N-succinyltran 41.6 11 0.00045 16.3 1.9 14 205-218 315-328 (342)
5 2pn0_A Prokaryotic transcripti 39.1 17 0.0007 15.2 4.4 38 149-195 90-128 (141)
6 1grj_A GREA protein; transcrip 36.4 18 0.00074 15.1 2.4 28 149-176 119-147 (158)
7 2f23_A Anti-cleavage anti-GREA 34.1 20 0.00085 14.7 2.6 35 150-194 119-154 (156)
8 2p4v_A Transcription elongatio 32.0 22 0.00092 14.5 3.0 36 149-194 117-153 (158)
9 2nap_A Protein (periplasmic ni 28.3 23 0.00097 14.4 1.9 29 148-176 641-669 (723)
10 1eu1_A Dimethyl sulfoxide redu 27.1 27 0.0011 14.0 2.0 31 147-177 666-696 (780)
11 2ki8_A Tungsten formylmethanof 25.1 29 0.0012 13.9 1.9 56 148-219 53-109 (146)
12 1yfb_A Transition state regula 24.9 25 0.0011 14.2 1.6 27 148-174 22-48 (59)
13 1tmo_A TMAO reductase, trimeth 24.3 30 0.0013 13.7 2.1 31 147-177 706-736 (829)
14 2ivf_A Ethylbenzene dehydrogen 23.9 31 0.0013 13.7 1.9 29 149-177 873-901 (976)
15 2e7z_A Acetylene hydratase AHY 23.0 32 0.0013 13.6 2.0 13 205-217 625-637 (727)
16 2vpz_A Thiosulfate reductase; 23.0 32 0.0013 13.6 1.8 29 148-176 647-675 (765)
17 1ogy_A Periplasmic nitrate red 22.2 33 0.0014 13.5 1.8 29 149-177 719-747 (802)
18 2cqa_A RUVB-like 2; TIP48, TIP 22.1 34 0.0014 13.5 2.2 31 150-180 48-81 (95)
19 1kqf_A FDH-N, formate dehydrog 21.7 34 0.0014 13.4 1.9 28 150-177 920-947 (1015)
20 2nya_A Periplasmic nitrate red 21.4 34 0.0014 13.4 1.7 28 149-176 709-736 (792)
21 1ti6_A Pyrogallol hydroxytrans 21.4 33 0.0014 13.5 1.6 27 150-176 772-798 (875)
22 1h0h_A Formate dehydrogenase ( 20.9 36 0.0015 13.3 1.7 28 150-177 882-909 (977)
No 1
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=99.58 E-value=3.9e-15 Score=103.81 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=130.8
Q ss_pred HHHHHHHCCCC-CEEECCCCC--------CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96311102453-000000000--------121366655542264103466542001111122233221011124310000
Q 537021.9.peg.7 57 MIKRVLGINGH-VVIQQKYYP--------LVDYQFIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFS 127 (270)
Q Consensus 57 i~~~i~~~~~~-i~i~~~~~~--------~~~~~~~~~~l~~~~~V~~~~p~i~~~~~i~~~~~~~~~v~i~Gv~~~~~~ 127 (270)
+.+++-++.++ +.|.+.... ........+.|++.|+|+.++|.+...+.+...+.....+.+.|++|++..
T Consensus 4 i~~~i~~lG~n~i~V~p~~~~~~~~~~~~~~lt~~D~~~i~~~~~v~~v~p~~~~~~~~~~~~~~~~~~~v~Gv~~~~~~ 83 (226)
T 3ftj_A 4 ILENIRGIGTNTMTIFNGNGFGDRRSRHIQNLKISDANTLSKQSYIQSVTPNTSSSGILVVGNKSFTSANLYGIGEQYFD 83 (226)
T ss_dssp STTTSTTSSSSEEEEEESSCTTCHHHHHSCCCBHHHHHHHHTSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEECTTHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEEEECCEEEEEEEEEEECHHHHH
T ss_conf 99999963897899981788788775553889999999985667885880564133699999858766899998878998
Q ss_pred CCCCHHHHCCCCCCCCCC---CCCCCCCHHHHHHHH---HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC--
Q ss_conf 012001100277542111---123421013454554---213332023113442100012211000012210233102--
Q 537021.9.peg.7 128 YLQNSFSRFYGNVSNDFD---RGKGVIIGKDLARNL---GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRF-- 199 (270)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~---~~~~iiiG~~lA~~L---~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~sg~-- 199 (270)
... .....|......+ ..+.|+||+.+|++| .-.+|.+|.+ ....|+|+||++...
T Consensus 84 i~~--~~i~~GR~f~~~D~~~~~~v~VIg~~~a~~LF~~~~~iG~~i~i--------------~~~~f~VVGVl~~~~~~ 147 (226)
T 3ftj_A 84 VEG--LKLKQGRLLTEDDVDQSNQVVVLDESAKKAIFANENPLGKTVIF--------------NKRPFRVIGVVSDQQLG 147 (226)
T ss_dssp HHT--CCEEEECCCCHHHHHHTCCEEEEEHHHHHHHHTTSCCTTCEEEE--------------TTEEEEEEEEECCC---
T ss_pred HCC--CCHHHCCCCCHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEE--------------CCCCEEEEEEECCCCCC
T ss_conf 719--72231876995687359949998547878765876677745877--------------89557999998646778
Q ss_pred -CCCCCCEEEEEHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHC-----CCCEEEEEHHHHHHHH
Q ss_conf -4455516898548899971899871079999569889999999999861-----9985999689988989
Q 537021.9.peg.7 200 -PDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL-----GNGVVVIDWQQRYQIF 264 (270)
Q Consensus 200 -~~~D~~~v~~~l~~~q~l~~~~~~~~~i~i~l~d~~~~~~~~~~i~~~l-----~~~~~v~~w~e~~~~l 264 (270)
..-++..+|+|+.+++..+...+.++.+.|++++..+.+++.+++++.+ .++|.+.++.+.-+.+
T Consensus 148 ~~~~~~~~i~iP~~t~~~~~~~~~~~~~i~v~~~~~~~~~~v~~~i~~~l~~~~~~~d~~i~~~~~~~~~~ 218 (226)
T 3ftj_A 148 GFPGNSLNLYSPYSTVLNKITGGSRIGSITVKISDDVNSTVAEKSLTELLKSLHGKKDFFIMNSDTIKQTI 218 (226)
T ss_dssp -----CCEEEEEHHHHHHHTTCSSBCSEEEEEECTTSCHHHHHHHHHHHHHHHHSSCCEEEESHHHHHHHH
T ss_pred CCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHH
T ss_conf 87788856999968999985388740489999908889999999999999986198886897699999999
No 2
>3is6_A Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83}
Probab=97.60 E-value=5.3e-05 Score=46.38 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=83.1
Q ss_pred HHCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HCCC
Q ss_conf 4226410346654200-1111122233221011124310000012001100277542111123421013454554-2133
Q 537021.9.peg.7 87 LDFIPDVIKVLPFVSG-QAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNL-GISI 164 (270)
Q Consensus 87 l~~~~~V~~~~p~i~~-~~~i~~~~~~~~~v~i~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiG~~lA~~L-~l~v 164 (270)
.+..|+|+.++.+... .......++......+..+|+++++.+... ...|+........+.|+|++.+|++| +=.+
T Consensus 48 ~~~~P~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ff~~f~~~--~l~G~~~~~l~~~~~vvIse~~A~klFgd~i 125 (244)
T 3is6_A 48 QEEIPGVELATRTTLYGTSKMILEDNKTYETKTLLAEPAFLDMFGVE--LIAGVRDSALRDNMTCLISESLARKMGGDVL 125 (244)
T ss_dssp HHHCTTEEEEEEEEEEEEEEEEETTTEEEEEEEEEECTHHHHHTTCC--EEEECGGGTTCSTTEEEEEHHHHHHTTSCCT
T ss_pred HHHCHHHHEEEEEEECCCCEEEECCCEEEEEEEEEECHHHHHHCCCC--EECCCHHHHHCCCCEEEECHHHHHHHCCCCC
T ss_conf 98690452999999728713897188777741799898599764985--3347842564389989984899997528745
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCCCCEEEEEHHHHHHHCCC---CCCEEEEEEEECCHHHHHH
Q ss_conf 320231134421000122110000122102331--02445551689854889997189---9871079999569889999
Q 537021.9.peg.7 165 GDKINILSPYGDVTPMGMGIRSKSYTVLGMFRM--RFPDYDNGMVYMSLQEAQLYFNL---ENAVSGIEVFVKDPDAIEK 239 (270)
Q Consensus 165 GD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~s--g~~~~D~~~v~~~l~~~q~l~~~---~~~~~~i~i~l~d~~~~~~ 239 (270)
|.++.+.... ..+.|+|+||++- ..+.+... +++|+......... .+......|+++++.+.+.
T Consensus 126 Gk~l~~~~~~----------~~~~~~V~GV~~d~p~nS~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 194 (244)
T 3is6_A 126 GKRLRPAESK----------SDRAITIGGVFEDLPHNSSIQAD-MLLPITWMPAESLNNWIGNDRYIAYVRLRPGVSPES 194 (244)
T ss_dssp TCEEEETTCC----------SSCCEEEEEEECCCCSSBSCCCS-EEEEGGGSCHHHHTCCSSCCCBEEEEEECTTCCGGG
T ss_pred CCEEEEECCC----------CCCEEEEEEEECCCCCCCCCCEE-EEEECCCCCHHCCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 6889850168----------98648999996899766766444-999863321101688777873789999999999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999861
Q 537021.9.peg.7 240 THENIVRIL 248 (270)
Q Consensus 240 ~~~~i~~~l 248 (270)
+.++|++.+
T Consensus 195 ~~~~l~~~~ 203 (244)
T 3is6_A 195 LDEALLEMQ 203 (244)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 3
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immune system; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=51.25 E-value=5.1 Score=18.14 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 23421013454554213332023113442
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYG 175 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~ 175 (270)
+.+|.|.+.+++.|++..||++.+....+
T Consensus 12 S~~vriPk~il~~l~l~~g~~v~i~v~~g 40 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLVDG 40 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEETT
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEEEECC
T ss_conf 21699289999984999899899999899
No 4
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=41.59 E-value=11 Score=16.29 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=7.4
Q ss_pred CEEEEEHHHHHHHC
Q ss_conf 16898548899971
Q 537021.9.peg.7 205 GMVYMSLQEAQLYF 218 (270)
Q Consensus 205 ~~v~~~l~~~q~l~ 218 (270)
..+.+|-++++.|-
T Consensus 315 ~~v~l~~~~a~aL~ 328 (342)
T 1yle_A 315 KPVALSVEAAEALG 328 (342)
T ss_dssp SCEEECHHHHHHHT
T ss_pred CEEEECHHHHHHCC
T ss_conf 86982899998649
No 5
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=39.13 E-value=17 Score=15.20 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 421013454554-21333202311344210001221100001221023
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMF 195 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~ 195 (270)
.|-+-+.++..| |.++||+|.+-.|.+. ..+++|..|-
T Consensus 90 ~IS~~SPlG~ALlG~~~Gd~v~v~~P~G~---------~~~~~I~~I~ 128 (141)
T 2pn0_A 90 KISILAPVGSALLGLAQGDEIEWPKPGGG---------VLRVRIVEVT 128 (141)
T ss_dssp EEETTSTTHHHHTTCBTTCEEEEECTTSS---------EEEEEEEEEE
T ss_pred EEECCCHHHHHHHCCCCCCEEEEECCCCC---------EEEEEEEEEE
T ss_conf 56327999999728999999999879998---------8999999998
No 6
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=36.40 E-value=18 Score=15.05 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCC
Q ss_conf 421013454554-2133320231134421
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGD 176 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~ 176 (270)
.|-.-+.+++.| |.++||+|.+-.|.+.
T Consensus 119 ~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~ 147 (158)
T 1grj_A 119 LISVNSPIARGLIGKEEDDVVVIKTPGGE 147 (158)
T ss_dssp EEESSSHHHHHHTTCBTTCEECC------
T ss_pred EECCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 33477878999838989998999839974
No 7
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 2etn_A
Probab=34.06 E-value=20 Score=14.73 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=24.5
Q ss_pred CCCHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 21013454554-2133320231134421000122110000122102
Q 537021.9.peg.7 150 VIIGKDLARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGM 194 (270)
Q Consensus 150 iiiG~~lA~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI 194 (270)
|-.-+.++..| |.++||+|++..|.+.. .|+|..|
T Consensus 119 IS~~SPlG~ALlG~k~Gd~v~v~~P~G~~----------~~~I~~I 154 (156)
T 2f23_A 119 ISDASPMGKALLGHRVGDVLSLDTPKGKR----------EFRVVAI 154 (156)
T ss_dssp EETTSHHHHHHTTCCTTCEEEEEETTEEE----------EEEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCEEEEECCCCCE----------EEEEEEE
T ss_conf 56789899997089999999998399878----------9999998
No 8
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=31.99 E-value=22 Score=14.53 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 421013454554-2133320231134421000122110000122102
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGDVTPMGMGIRSKSYTVLGM 194 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI 194 (270)
.|-..+.+++.| |.++||+|.+-.|.+. +.|+|.-|
T Consensus 117 ~IS~~SPlG~ALlGkk~Gd~V~v~~p~G~----------~~~~I~~I 153 (158)
T 2p4v_A 117 YISIDSPMARALLKKEVGDLAVVNTPAGE----------ASWYVNAI 153 (158)
T ss_dssp CBCTTSHHHHHSTTCCTTCEEEEECSSCE----------EEEEEEEE
T ss_pred EECCCCHHHHHHHCCCCCCEEEEEECCCC----------EEEEEEEE
T ss_conf 57578989999708999998999808987----------89999999
No 9
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=28.34 E-value=23 Score=14.39 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 34210134545542133320231134421
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGD 176 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270)
+.+-|...-|++||++-||.|.|.++.+.
T Consensus 641 ~~v~inp~dA~~lGi~dGD~V~V~n~~G~ 669 (723)
T 2nap_A 641 AFVEINEEDAARTGIKHGDSVIVETRRDA 669 (723)
T ss_dssp CCEEEEHHHHHHHTCCTTCEEEEEETTEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEEECCEE
T ss_conf 87998999998759999899999938948
No 10
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=27.11 E-value=27 Score=14.04 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2342101345455421333202311344210
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
.+.|.|...-|++||++-||.|.|.++.+..
T Consensus 666 ~~~v~inp~dA~~lGI~dGD~V~V~s~~G~i 696 (780)
T 1eu1_A 666 HEPCLINPADAAARGIADGDVLRVFNDRGQI 696 (780)
T ss_dssp BCEEEECHHHHHTTTCCTTCEEEEECSSCEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf 9859989999987699989999998799799
No 11
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=25.10 E-value=29 Score=13.87 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEHHH-HHHHCC
Q ss_conf 342101345455421333202311344210001221100001221023310244555168985488-999718
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQE-AQLYFN 219 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~~~~~~~~~~~f~V~GI~~sg~~~~D~~~v~~~l~~-~q~l~~ 219 (270)
.-|-|...-|++||++-||.|.+.++.+... .++ .. + +.-...+|+|... +..|.+
T Consensus 53 ~~i~inP~DA~~LGi~~Gd~V~V~s~~G~v~----------v~a--~~-~---dv~~G~vf~P~g~~aN~Lt~ 109 (146)
T 2ki8_A 53 NYAEINEEDWNALGLQEGDRVKVKTEFGEVV----------VFA--KK-G---DVPKGMIFIPMGPYANMVID 109 (146)
T ss_dssp SEEEECHHHHHHHTCCTTCEEEEECSSCEEE----------EEE--EE-C---SCCTTEEEEESSHHHHTTSC
T ss_pred EEEEECHHHHHHCCCCCCCEEEEECCCEEEE----------EEE--EE-E---CCCCCEEEEECCCCCEECCC
T ss_conf 5999999999884999899999987997899----------999--99-0---13399699855662525678
No 12
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.90 E-value=25 Score=14.15 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 342101345455421333202311344
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPY 174 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~ 174 (270)
.-|+|.+++-+.|++..||.+.++...
T Consensus 22 GRIVIPkElRr~L~I~~~d~lEIfve~ 48 (59)
T 1yfb_A 22 GRVVIPIELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp CEEECCHHHHHHTTCCTTCEEEEEEET
T ss_pred CCEEEEHHHHHHCCCCCCCCEEEEEEC
T ss_conf 879922999977599999908999809
No 13
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=24.29 E-value=30 Score=13.74 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2342101345455421333202311344210
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
.+.|-|...-|++||++-||.|.|.++.+..
T Consensus 706 ~~~v~Inp~dA~~lGI~dGD~V~V~s~~G~v 736 (829)
T 1tmo_A 706 REPVYISPVDAKARGIKDGDIVRVFNDRGQL 736 (829)
T ss_dssp BCEEEECHHHHHHTTCCTTCEEEEECSSCEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf 9879989999997699999999998798899
No 14
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP}
Probab=23.91 E-value=31 Score=13.69 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 42101345455421333202311344210
Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
.|.|...-|+++|++-||.|.|+++.+..
T Consensus 873 ~v~inp~DA~~lGI~dGD~V~V~n~~G~v 901 (976)
T 2ivf_A 873 VVHMNSKDAAELGIKDGDMAKLFNDFADC 901 (976)
T ss_dssp EEEEEHHHHHHTTCCTTCEEEEECSSCEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEEECCEEE
T ss_conf 89989999987699989999998389899
No 15
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=23.00 E-value=32 Score=13.59 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=6.0
Q ss_pred CEEEEEHHHHHHH
Q ss_conf 1689854889997
Q 537021.9.peg.7 205 GMVYMSLQEAQLY 217 (270)
Q Consensus 205 ~~v~~~l~~~q~l 217 (270)
..+.|+=++|+++
T Consensus 625 ~~v~Inp~dA~~l 637 (727)
T 2e7z_A 625 PVALLHPKTAQSL 637 (727)
T ss_dssp CEEEECHHHHHHH
T ss_pred CEEEECHHHHHHC
T ss_conf 8699899999876
No 16
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=22.99 E-value=32 Score=13.62 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 34210134545542133320231134421
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGD 176 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270)
+.|.|...-|++||++-||.|.|.++.+.
T Consensus 647 ~~v~inp~dA~~lGI~dGD~V~v~s~~G~ 675 (765)
T 2vpz_A 647 NEVWIHKEEAKRLGLKEGDYVMLVNQDGV 675 (765)
T ss_dssp CEEECCHHHHHHTTCCTTCEEEEEETTCC
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCE
T ss_conf 87998999998769998999999818953
No 17
>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1
Probab=22.17 E-value=33 Score=13.49 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 42101345455421333202311344210
Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
-|.|...-|++||++-||.|.|.++.+..
T Consensus 719 ~v~inp~dA~~lGI~dGD~V~V~~~~G~i 747 (802)
T 1ogy_A 719 VCFMHPEDARSRGLNRGSEVRVISRRGEI 747 (802)
T ss_dssp EEECCHHHHHHTTCCTTCEEEEECSSCEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCCEE
T ss_conf 79989999987599999999998899349
No 18
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=22.06 E-value=34 Score=13.48 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=21.3
Q ss_pred CCCHHHHHHHH---HCCCCCEEEECCCCCCCCCC
Q ss_conf 21013454554---21333202311344210001
Q 537021.9.peg.7 150 VIIGKDLARNL---GISIGDKINILSPYGDVTPM 180 (270)
Q Consensus 150 iiiG~~lA~~L---~l~vGD~i~l~~~~~~~~~~ 180 (270)
.=||..+++.| ++..||-|.+-...+..+..
T Consensus 48 l~lg~ki~eqL~kekV~~GDVI~ID~~sG~V~kl 81 (95)
T 2cqa_A 48 YDLGTKMIESLTKDKVQAGDVITIDKATGKISKL 81 (95)
T ss_dssp EEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEE
T ss_pred EECCHHHHHHHHHCCCCCCCEEEEECCCCEEEEE
T ss_conf 8469899999998497758899998688579996
No 19
>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=21.72 E-value=34 Score=13.44 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2101345455421333202311344210
Q 537021.9.peg.7 150 VIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 150 iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
|-|...-|++||++-||.|.|.++.+..
T Consensus 920 v~Inp~DA~~lGIkdGD~V~V~s~~G~v 947 (1015)
T 1kqf_A 920 VEISETLAAAKGINNGDRVTVSSKRGFI 947 (1015)
T ss_dssp EEECHHHHHHHTCCTTCEEEEECSSCEE
T ss_pred EEECHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf 9989999987699999999998699899
No 20
>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12}
Probab=21.40 E-value=34 Score=13.44 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 4210134545542133320231134421
Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINILSPYGD 176 (270)
Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270)
.|-|...-|++||++-||.|.|.++.+.
T Consensus 709 ~v~Inp~dA~~lGI~dGD~V~v~n~~G~ 736 (792)
T 2nya_A 709 VLFIHPLDAKARDLRRGDKVKVVSRRGE 736 (792)
T ss_dssp EEECCHHHHHTTTCCTTCEEEEEETTEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCEE
T ss_conf 8998999998769999899999879979
No 21
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=21.38 E-value=33 Score=13.53 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 210134545542133320231134421
Q 537021.9.peg.7 150 VIIGKDLARNLGISIGDKINILSPYGD 176 (270)
Q Consensus 150 iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270)
|.|...-|++||++-||.|.|.++.+.
T Consensus 772 v~inp~dA~~lGI~dGD~V~V~n~~G~ 798 (875)
T 1ti6_A 772 MRVNSIDAEARGIKNGDLIRAYNDRGS 798 (875)
T ss_dssp EEEEHHHHHHTTCCTTCEEEEEETTEE
T ss_pred EEECHHHHHHCCCCCCCEEEEECCCEE
T ss_conf 999999998759998999999869979
No 22
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=20.88 E-value=36 Score=13.34 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2101345455421333202311344210
Q 537021.9.peg.7 150 VIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 150 iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
|-|...-|++||++-||.|.|.++.+..
T Consensus 882 v~Inp~DA~~lGIkdGD~V~V~s~~G~v 909 (977)
T 1h0h_A 882 CEMSEELATLRGIKNGDKVILESVRGKL 909 (977)
T ss_dssp EEECHHHHHHHTCCTTCEEEEEETTEEE
T ss_pred EEECHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf 9989999987599989999998799899
Done!