Query 537021.9.peg.788_1 Match_columns 270 No_of_seqs 139 out of 2893 Neff 9.1 Searched_HMMs 13730 Date Wed May 25 04:23:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_788.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1mvfd_ b.129.1.1 (D:) MazE {E 49.5 3.2 0.00024 17.9 1.5 28 147-174 9-36 (44) 2 d1h0ha1 b.52.2.2 (A:813-977) T 49.0 3.7 0.00027 17.6 1.7 32 147-178 67-98 (165) 3 d1kqfa1 b.52.2.2 (A:851-1015) 48.4 4.1 0.0003 17.3 1.9 31 148-178 68-98 (165) 4 d1ogya1 b.52.2.2 (A:682-801) P 47.0 4.4 0.00032 17.1 1.9 31 147-177 36-66 (120) 5 d1eu1a1 b.52.2.2 (A:626-780) D 46.4 4.6 0.00033 17.0 1.9 32 147-178 41-72 (155) 6 d1ylea1 d.108.1.8 (A:1-338) Ar 42.4 5.9 0.00043 16.4 1.9 15 204-218 312-326 (338) 7 d1g8ka1 b.52.2.2 (A:683-825) A 40.7 6 0.00044 16.4 1.8 30 148-177 44-73 (143) 8 d1tmoa1 b.52.2.2 (A:632-798) T 40.5 6.7 0.00049 16.1 2.0 32 147-178 44-75 (167) 9 d2jioa1 b.52.2.2 (A:601-723) P 39.8 6.5 0.00047 16.2 1.8 31 147-177 40-70 (123) 10 d2iv2x1 b.52.2.2 (X:565-715) F 39.3 6.7 0.00048 16.1 1.8 30 149-178 43-72 (151) 11 d1vlfm1 b.52.2.2 (M:729-875) T 39.0 5.8 0.00043 16.4 1.5 32 147-178 41-72 (147) 12 d1grja2 d.26.1.2 (A:80-158) Gr 34.0 10 0.00073 15.1 2.0 28 149-176 40-68 (79) 13 d1y5ia1 b.52.2.2 (A:1075-1244) 32.8 9.7 0.00071 15.2 1.8 33 146-178 39-71 (170) 14 d2fug31 b.52.2.2 (3:686-767) N 21.8 12 0.0009 14.6 0.7 29 148-176 29-57 (82) 15 d1yfba1 b.129.1.3 (A:3-53) Tra 20.3 20 0.0015 13.4 1.5 27 148-174 14-40 (51) No 1 >d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]} Probab=49.48 E-value=3.2 Score=17.89 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.1 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCC Q ss_conf 2342101345455421333202311344 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPY 174 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~ 174 (270) +.++-|.+.+++.+++..||++.+.... T Consensus 9 S~gvriP~~~l~~l~l~~g~~vei~v~~ 36 (44) T d1mvfd_ 9 SPAVRIPATLMQALNLNIDDEVKIDLVD 36 (44) T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEET T ss_pred CEEEECCHHHHHHCCCCCCCEEEEEEEC T ss_conf 5347716999987699999999999999 No 2 >d1h0ha1 b.52.2.2 (A:813-977) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Probab=49.04 E-value=3.7 Score=17.58 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=26.9 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 23421013454554213332023113442100 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) .+-+-|....|+++|++-||.|.|.++.+... T Consensus 67 ~~~v~i~p~dA~~lGi~dGD~V~V~s~~G~~~ 98 (165) T d1h0ha1 67 QMFCEMSEELATLRGIKNGDKVILESVRGKLW 98 (165) T ss_dssp SCEEEECHHHHHHHTCCTTCEEEEEETTEEEE T ss_pred CEEEEECHHHHHHCCCCCCCEEEEECCCCEEE T ss_conf 24887779999982998678899987881899 No 3 >d1kqfa1 b.52.2.2 (A:851-1015) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} Probab=48.39 E-value=4.1 Score=17.31 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=26.4 Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 3421013454554213332023113442100 Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) +.|-|....|++||++-||.|.|.++.+... T Consensus 68 p~v~inp~dA~~lGI~dGD~V~v~s~~G~i~ 98 (165) T d1kqfa1 68 QFVEISETLAAAKGINNGDRVTVSSKRGFIR 98 (165) T ss_dssp CEEEECHHHHHHHTCCTTCEEEEECSSCEEE T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCEEE T ss_conf 5799857179885997556247757873699 No 4 >d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]} Probab=47.01 E-value=4.4 Score=17.11 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=26.4 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC Q ss_conf 2342101345455421333202311344210 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270) .+.+-|...-|++||++-||.|.|.++.+.. T Consensus 36 ~~~v~inp~dA~~~Gi~dGd~V~v~s~~G~i 66 (120) T d1ogya1 36 GAVCFMHPEDARSRGLNRGSEVRVISRRGEI 66 (120) T ss_dssp SCEEECCHHHHHHTTCCTTCEEEEECSSCEE T ss_pred CEEEEECHHHHHHHCCCCCCEEEEECCCCCE T ss_conf 6699965899997388789889999799858 No 5 >d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Probab=46.41 E-value=4.6 Score=17.02 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.7 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 23421013454554213332023113442100 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) .+.|.|....|+++|++-||.|.|.++.+... T Consensus 41 ~~~v~Inp~dA~~~GI~dGD~V~V~n~~G~~~ 72 (155) T d1eu1a1 41 HEPCLINPADAAARGIADGDVLRVFNDRGQIL 72 (155) T ss_dssp BCEEEECHHHHHTTTCCTTCEEEEECSSCEEE T ss_pred CCEEEECHHHHHHCCCCCCCEEEEEECCCCCE T ss_conf 98699999999885998768799950576528 No 6 >d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha chain, AstA {Pseudomonas aeruginosa [TaxId: 287]} Probab=42.36 E-value=5.9 Score=16.40 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=7.8 Q ss_pred CCEEEEEHHHHHHHC Q ss_conf 516898548899971 Q 537021.9.peg.7 204 NGMVYMSLQEAQLYF 218 (270) Q Consensus 204 ~~~v~~~l~~~q~l~ 218 (270) ...+.++-++++.|- T Consensus 312 ~~~v~l~~~~a~~L~ 326 (338) T d1ylea1 312 GKPVALSVEAAEALG 326 (338) T ss_dssp TSCEEECHHHHHHHT T ss_pred CCEEEECHHHHHHCC T ss_conf 987970999997659 No 7 >d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Probab=40.75 E-value=6 Score=16.37 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=25.3 Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCC Q ss_conf 342101345455421333202311344210 Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270) Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270) +-+.|...-|++||++-||.|.+.++.+.. T Consensus 44 ~~v~Inp~DA~~lGi~~Gd~V~v~s~~G~i 73 (143) T d1g8ka1 44 AYIEMNPDDCKQLDVTGGDIVEVYNDFGST 73 (143) T ss_dssp CEEEECHHHHHHTTCCTTEEEEEECSSCEE T ss_pred CCCCCCHHHHHHHCCCCCCEEEEECCCEEE T ss_conf 543049999998089988889997443799 No 8 >d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Probab=40.52 E-value=6.7 Score=16.07 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.7 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 23421013454554213332023113442100 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) .+.|.|...-|+++|++-||.|.|.++.+... T Consensus 44 ~~~v~inp~dA~~~Gi~~Gd~V~v~n~~G~~~ 75 (167) T d1tmoa1 44 REPVYISPVDAKARGIKDGDIVRVFNDRGQLL 75 (167) T ss_dssp BCEEEECHHHHHHTTCCTTCEEEEECSSCEEE T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCCCEE T ss_conf 87699899999885998989999985997579 No 9 >d2jioa1 b.52.2.2 (A:601-723) Periplasmic nitrate reductase alpha chain, NapA {Desulfovibrio desulfuricans [TaxId: 876]} Probab=39.83 E-value=6.5 Score=16.17 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=25.9 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC Q ss_conf 2342101345455421333202311344210 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270) .+.+-|...-|+++|++-||.|.|.++.+.. T Consensus 40 ~~~v~inp~dA~~~Gi~~Gd~V~v~s~~G~~ 70 (123) T d2jioa1 40 IAFVEINEEDAARTGIKHGDSVIVETRRDAM 70 (123) T ss_dssp SCCEEEEHHHHHTTTCCTTCEEEEECSSCEE T ss_pred CEEEEECHHHHHHHCCCCCCEEEEECCCCEE T ss_conf 3599952999998289771025897378669 No 10 >d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} Probab=39.25 E-value=6.7 Score=16.11 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.5 Q ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 421013454554213332023113442100 Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) -|.|...-|++||++-||.|.|.++.+... T Consensus 43 ~v~inP~DA~~lGI~dGd~V~V~s~~G~v~ 72 (151) T d2iv2x1 43 YAQINTEDAKRLGIEDEALVWVHSRKGKII 72 (151) T ss_dssp EEEEEHHHHHHHTCCTTCEEEEECSSCEEE T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCCCEE T ss_conf 999879999981999878899988997399 No 11 >d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} Probab=39.01 E-value=5.8 Score=16.43 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=27.0 Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 23421013454554213332023113442100 Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) .+.+-|.-.-|+++|++-||.|.|.++.+... T Consensus 41 ~~~v~inp~dA~~~GI~dGD~V~V~n~~G~i~ 72 (147) T d1vlfm1 41 YWIMRVNSIDAEARGIKNGDLIRAYNDRGSVI 72 (147) T ss_dssp EEEEEEEHHHHHTTTCCTTCEEEEEETTEEEE T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCCEEE T ss_conf 85466299999983999989999977993899 No 12 >d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=34.04 E-value=10 Score=15.11 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=21.1 Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCC Q ss_conf 421013454554-2133320231134421 Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGD 176 (270) Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~ 176 (270) .|-+.+.+++.| |.++||.+.+-.|.+. T Consensus 40 ~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~ 68 (79) T d1grja2 40 LISVNSPIARGLIGKEEDDVVVIKTPGGE 68 (79) T ss_dssp EEESSSHHHHHHTTCBTTCEECC------ T ss_pred EEEECCHHHHHHHCCCCCCEEEEECCCCC T ss_conf 68727989999739999999999969986 No 13 >d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Probab=32.85 E-value=9.7 Score=15.18 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=26.6 Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC Q ss_conf 123421013454554213332023113442100 Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270) Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270) ..+.|-|...-|+++|++-||.|.+.++.+... T Consensus 39 ~~p~v~Inp~dA~~~GI~dGD~V~V~n~~G~i~ 71 (170) T d1y5ia1 39 GGPVVWLSEADAKDLGIADNDWIEVFNSNGALT 71 (170) T ss_dssp SSCEEEEEHHHHHHHTCCTTCEEEEEETTEEEE T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE T ss_conf 998899893599985999999999986999999 No 14 >d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=21.83 E-value=12 Score=14.58 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=24.6 Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCC Q ss_conf 34210134545542133320231134421 Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGD 176 (270) Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270) ..+-|.-.-|+++|++-||.|.|.++.+. T Consensus 29 p~v~i~P~dA~~lGi~~Gd~V~V~s~~G~ 57 (82) T d2fug31 29 AELWAHPETARAEALPEGAQVAVETPFGR 57 (82) T ss_dssp C--CCCSSSCSTTTCCTTCEEEEEETTEE T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCE T ss_conf 88999999998869996889999838908 No 15 >d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]} Probab=20.27 E-value=20 Score=13.40 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.2 Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCC Q ss_conf 342101345455421333202311344 Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPY 174 (270) Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~ 174 (270) ..|+|.+++-+.|++..||.+.++... T Consensus 14 GRiViPkElR~~L~I~~~d~lEifve~ 40 (51) T d1yfba1 14 GRVVIPIELRRTLGIAEKDALEIYVDD 40 (51) T ss_dssp CEEECCHHHHHHTTCCTTCEEEEEEET T ss_pred CCEECCHHHHHHCCCCCCCCEEEEEEC T ss_conf 889820999976599889958999829 Done!