Query 537021.9.peg.788_1
Match_columns 270
No_of_seqs 139 out of 2893
Neff 9.1
Searched_HMMs 13730
Date Wed May 25 04:23:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_788.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mvfd_ b.129.1.1 (D:) MazE {E 49.5 3.2 0.00024 17.9 1.5 28 147-174 9-36 (44)
2 d1h0ha1 b.52.2.2 (A:813-977) T 49.0 3.7 0.00027 17.6 1.7 32 147-178 67-98 (165)
3 d1kqfa1 b.52.2.2 (A:851-1015) 48.4 4.1 0.0003 17.3 1.9 31 148-178 68-98 (165)
4 d1ogya1 b.52.2.2 (A:682-801) P 47.0 4.4 0.00032 17.1 1.9 31 147-177 36-66 (120)
5 d1eu1a1 b.52.2.2 (A:626-780) D 46.4 4.6 0.00033 17.0 1.9 32 147-178 41-72 (155)
6 d1ylea1 d.108.1.8 (A:1-338) Ar 42.4 5.9 0.00043 16.4 1.9 15 204-218 312-326 (338)
7 d1g8ka1 b.52.2.2 (A:683-825) A 40.7 6 0.00044 16.4 1.8 30 148-177 44-73 (143)
8 d1tmoa1 b.52.2.2 (A:632-798) T 40.5 6.7 0.00049 16.1 2.0 32 147-178 44-75 (167)
9 d2jioa1 b.52.2.2 (A:601-723) P 39.8 6.5 0.00047 16.2 1.8 31 147-177 40-70 (123)
10 d2iv2x1 b.52.2.2 (X:565-715) F 39.3 6.7 0.00048 16.1 1.8 30 149-178 43-72 (151)
11 d1vlfm1 b.52.2.2 (M:729-875) T 39.0 5.8 0.00043 16.4 1.5 32 147-178 41-72 (147)
12 d1grja2 d.26.1.2 (A:80-158) Gr 34.0 10 0.00073 15.1 2.0 28 149-176 40-68 (79)
13 d1y5ia1 b.52.2.2 (A:1075-1244) 32.8 9.7 0.00071 15.2 1.8 33 146-178 39-71 (170)
14 d2fug31 b.52.2.2 (3:686-767) N 21.8 12 0.0009 14.6 0.7 29 148-176 29-57 (82)
15 d1yfba1 b.129.1.3 (A:3-53) Tra 20.3 20 0.0015 13.4 1.5 27 148-174 14-40 (51)
No 1
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Probab=49.48 E-value=3.2 Score=17.89 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 2342101345455421333202311344
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPY 174 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~ 174 (270)
+.++-|.+.+++.+++..||++.+....
T Consensus 9 S~gvriP~~~l~~l~l~~g~~vei~v~~ 36 (44)
T d1mvfd_ 9 SPAVRIPATLMQALNLNIDDEVKIDLVD 36 (44)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEET
T ss_pred CEEEECCHHHHHHCCCCCCCEEEEEEEC
T ss_conf 5347716999987699999999999999
No 2
>d1h0ha1 b.52.2.2 (A:813-977) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=49.04 E-value=3.7 Score=17.58 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+-+-|....|+++|++-||.|.|.++.+...
T Consensus 67 ~~~v~i~p~dA~~lGi~dGD~V~V~s~~G~~~ 98 (165)
T d1h0ha1 67 QMFCEMSEELATLRGIKNGDKVILESVRGKLW 98 (165)
T ss_dssp SCEEEECHHHHHHHTCCTTCEEEEEETTEEEE
T ss_pred CEEEEECHHHHHHCCCCCCCEEEEECCCCEEE
T ss_conf 24887779999982998678899987881899
No 3
>d1kqfa1 b.52.2.2 (A:851-1015) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=48.39 E-value=4.1 Score=17.31 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 3421013454554213332023113442100
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
+.|-|....|++||++-||.|.|.++.+...
T Consensus 68 p~v~inp~dA~~lGI~dGD~V~v~s~~G~i~ 98 (165)
T d1kqfa1 68 QFVEISETLAAAKGINNGDRVTVSSKRGFIR 98 (165)
T ss_dssp CEEEECHHHHHHHTCCTTCEEEEECSSCEEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCEEE
T ss_conf 5799857179885997556247757873699
No 4
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=47.01 E-value=4.4 Score=17.11 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2342101345455421333202311344210
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
.+.+-|...-|++||++-||.|.|.++.+..
T Consensus 36 ~~~v~inp~dA~~~Gi~dGd~V~v~s~~G~i 66 (120)
T d1ogya1 36 GAVCFMHPEDARSRGLNRGSEVRVISRRGEI 66 (120)
T ss_dssp SCEEECCHHHHHHTTCCTTCEEEEECSSCEE
T ss_pred CEEEEECHHHHHHHCCCCCCEEEEECCCCCE
T ss_conf 6699965899997388789889999799858
No 5
>d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=46.41 E-value=4.6 Score=17.02 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|.|....|+++|++-||.|.|.++.+...
T Consensus 41 ~~~v~Inp~dA~~~GI~dGD~V~V~n~~G~~~ 72 (155)
T d1eu1a1 41 HEPCLINPADAAARGIADGDVLRVFNDRGQIL 72 (155)
T ss_dssp BCEEEECHHHHHTTTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEEECCCCCE
T ss_conf 98699999999885998768799950576528
No 6
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.36 E-value=5.9 Score=16.40 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=7.8
Q ss_pred CCEEEEEHHHHHHHC
Q ss_conf 516898548899971
Q 537021.9.peg.7 204 NGMVYMSLQEAQLYF 218 (270)
Q Consensus 204 ~~~v~~~l~~~q~l~ 218 (270)
...+.++-++++.|-
T Consensus 312 ~~~v~l~~~~a~~L~ 326 (338)
T d1ylea1 312 GKPVALSVEAAEALG 326 (338)
T ss_dssp TSCEEECHHHHHHHT
T ss_pred CCEEEECHHHHHHCC
T ss_conf 987970999997659
No 7
>d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}
Probab=40.75 E-value=6 Score=16.37 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 342101345455421333202311344210
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
+-+.|...-|++||++-||.|.+.++.+..
T Consensus 44 ~~v~Inp~DA~~lGi~~Gd~V~v~s~~G~i 73 (143)
T d1g8ka1 44 AYIEMNPDDCKQLDVTGGDIVEVYNDFGST 73 (143)
T ss_dssp CEEEECHHHHHHTTCCTTEEEEEECSSCEE
T ss_pred CCCCCCHHHHHHHCCCCCCEEEEECCCEEE
T ss_conf 543049999998089988889997443799
No 8
>d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}
Probab=40.52 E-value=6.7 Score=16.07 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.|.|...-|+++|++-||.|.|.++.+...
T Consensus 44 ~~~v~inp~dA~~~Gi~~Gd~V~v~n~~G~~~ 75 (167)
T d1tmoa1 44 REPVYISPVDAKARGIKDGDIVRVFNDRGQLL 75 (167)
T ss_dssp BCEEEECHHHHHHTTCCTTCEEEEECSSCEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCCCEE
T ss_conf 87699899999885998989999985997579
No 9
>d2jioa1 b.52.2.2 (A:601-723) Periplasmic nitrate reductase alpha chain, NapA {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=39.83 E-value=6.5 Score=16.17 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 2342101345455421333202311344210
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDV 177 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~ 177 (270)
.+.+-|...-|+++|++-||.|.|.++.+..
T Consensus 40 ~~~v~inp~dA~~~Gi~~Gd~V~v~s~~G~~ 70 (123)
T d2jioa1 40 IAFVEINEEDAARTGIKHGDSVIVETRRDAM 70 (123)
T ss_dssp SCCEEEEHHHHHTTTCCTTCEEEEECSSCEE
T ss_pred CEEEEECHHHHHHHCCCCCCEEEEECCCCEE
T ss_conf 3599952999998289771025897378669
No 10
>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}
Probab=39.25 E-value=6.7 Score=16.11 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 421013454554213332023113442100
Q 537021.9.peg.7 149 GVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 149 ~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
-|.|...-|++||++-||.|.|.++.+...
T Consensus 43 ~v~inP~DA~~lGI~dGd~V~V~s~~G~v~ 72 (151)
T d2iv2x1 43 YAQINTEDAKRLGIEDEALVWVHSRKGKII 72 (151)
T ss_dssp EEEEEHHHHHHHTCCTTCEEEEECSSCEEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCCCEE
T ss_conf 999879999981999878899988997399
No 11
>d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}
Probab=39.01 E-value=5.8 Score=16.43 Aligned_cols=32 Identities=25% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 23421013454554213332023113442100
Q 537021.9.peg.7 147 GKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 147 ~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
.+.+-|.-.-|+++|++-||.|.|.++.+...
T Consensus 41 ~~~v~inp~dA~~~GI~dGD~V~V~n~~G~i~ 72 (147)
T d1vlfm1 41 YWIMRVNSIDAEARGIKNGDLIRAYNDRGSVI 72 (147)
T ss_dssp EEEEEEEHHHHHTTTCCTTCEEEEEETTEEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCCEEE
T ss_conf 85466299999983999989999977993899
No 12
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.04 E-value=10 Score=15.11 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHH-HCCCCCEEEECCCCCC
Q ss_conf 421013454554-2133320231134421
Q 537021.9.peg.7 149 GVIIGKDLARNL-GISIGDKINILSPYGD 176 (270)
Q Consensus 149 ~iiiG~~lA~~L-~l~vGD~i~l~~~~~~ 176 (270)
.|-+.+.+++.| |.++||.+.+-.|.+.
T Consensus 40 ~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~ 68 (79)
T d1grja2 40 LISVNSPIARGLIGKEEDDVVVIKTPGGE 68 (79)
T ss_dssp EEESSSHHHHHHTTCBTTCEECC------
T ss_pred EEEECCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 68727989999739999999999969986
No 13
>d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]}
Probab=32.85 E-value=9.7 Score=15.18 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 123421013454554213332023113442100
Q 537021.9.peg.7 146 RGKGVIIGKDLARNLGISIGDKINILSPYGDVT 178 (270)
Q Consensus 146 ~~~~iiiG~~lA~~L~l~vGD~i~l~~~~~~~~ 178 (270)
..+.|-|...-|+++|++-||.|.+.++.+...
T Consensus 39 ~~p~v~Inp~dA~~~GI~dGD~V~V~n~~G~i~ 71 (170)
T d1y5ia1 39 GGPVVWLSEADAKDLGIADNDWIEVFNSNGALT 71 (170)
T ss_dssp SSCEEEEEHHHHHHHTCCTTCEEEEEETTEEEE
T ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCEEEE
T ss_conf 998899893599985999999999986999999
No 14
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.83 E-value=12 Score=14.58 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 34210134545542133320231134421
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPYGD 176 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~~~ 176 (270)
..+-|.-.-|+++|++-||.|.|.++.+.
T Consensus 29 p~v~i~P~dA~~lGi~~Gd~V~V~s~~G~ 57 (82)
T d2fug31 29 AELWAHPETARAEALPEGAQVAVETPFGR 57 (82)
T ss_dssp C--CCCSSSCSTTTCCTTCEEEEEETTEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCE
T ss_conf 88999999998869996889999838908
No 15
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=20.27 E-value=20 Score=13.40 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 342101345455421333202311344
Q 537021.9.peg.7 148 KGVIIGKDLARNLGISIGDKINILSPY 174 (270)
Q Consensus 148 ~~iiiG~~lA~~L~l~vGD~i~l~~~~ 174 (270)
..|+|.+++-+.|++..||.+.++...
T Consensus 14 GRiViPkElR~~L~I~~~d~lEifve~ 40 (51)
T d1yfba1 14 GRVVIPIELRRTLGIAEKDALEIYVDD 40 (51)
T ss_dssp CEEECCHHHHHHTTCCTTCEEEEEEET
T ss_pred CCEECCHHHHHHCCCCCCCCEEEEEEC
T ss_conf 889820999976599889958999829
Done!