RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.788_1 (270 letters) >3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans} (A:) Length = 226 Score = 63.7 bits (154), Expect = 3e-11 Identities = 23/230 (10%), Positives = 63/230 (27%), Gaps = 22/230 (9%) Query: 46 VMSVMNGFREDMIKRVLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAF 105 ++ + G + + G + L AN L + V P S Sbjct: 4 ILENIRGIGTNTMTIFNGNGFGDRRSRHIQNL--KISDANTLSKQSYIQSVTPNTSSSGI 61 Query: 106 VSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRG-KGVIIGKDLARNL---G 161 + + + + GI F + +D D+ + V++ + + + Sbjct: 62 LVVGNKSFTSANLYGIGEQYFDVEGLKLKQGRLLTEDDVDQSNQVVVLDESAKKAIFANE 121 Query: 162 ISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLE 221 +G + + V+ ++ ++ +Y Sbjct: 122 NPLGKTVIF-----------NKRPFRVIGVVSDQQLGGFPGNSLNLYSPYSTVLNKITGG 170 Query: 222 NAVSGIEVFVKDPDAIEKTHENIVRIL-----GNGVVVIDWQQRYQIFFS 266 + + I V + D +++ +L +++ Q + Sbjct: 171 SRIGSITVKISDDVNSTVAEKSLTELLKSLHGKKDFFIMNSDTIKQTIEN 220 >3is6_A Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83} (A:) Length = 244 Score = 47.4 bits (112), Expect = 2e-06 Identities = 26/215 (12%), Positives = 47/215 (21%), Gaps = 26/215 (12%) Query: 47 MSVMNGFRE-DMIKRV-----LGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFV 100 S F D I V ++ + V + IP V Sbjct: 2 RSYERDFPHHDRICIVKTHGTRQSQEGDKPEELDFSQVSGGVAPAIQEEIPGVELATRTT 61 Query: 101 SGQAFVSGLSSGG--SGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLAR 158 + + G + +I + LAR Sbjct: 62 LYGTSKX-ILEDNKTYETKTLLAEPAFLDXFGVELI--AGVRDSALRDNXTCLISESLAR 118 Query: 159 N-LGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFR----MRFPDYDNGMVYMSLQE 213 G +G ++ D T+ G+F D + Sbjct: 119 KXGGDVLGKRLRPAESKSDRA----------ITIGGVFEDLPHNSSIQADXLLPITWXPA 168 Query: 214 AQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL 248 L + N V ++ + E E ++ Sbjct: 169 ESLNNWIGNDRYIAYVRLRPGVSPESLDEALLEXQ 203 >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} (A:1-20,A:55-323) Length = 289 Score = 30.2 bits (66), Expect = 0.30 Identities = 6/37 (16%), Positives = 13/37 (35%) Query: 149 GVIIGKDLARNLGISIGDKINILSPYGDVTPMGMGIR 185 + + R+ I G + + + G T +R Sbjct: 252 VPVALDEAIRDGRIQRGQLLLLEAFGGGWTWGSALVR 288 >1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (A:1-106,A:343-507) Length = 271 Score = 29.2 bits (65), Expect = 0.66 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%) Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNG 52 F +A + + +++ + +++ Sbjct: 237 MVFNVLAGIVLLVALLL--FIYGLFSVLLSR 265 >1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:1-108) Length = 108 Score = 28.2 bits (63), Expect = 1.1 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170 V +D I + + + NL + +GD I+I Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 102 >2nsf_A Hypothetical protein CGL3021; metal binding, isomerase; 1.75A {Corynebacterium glutamicum} (A:178-261) Length = 84 Score = 28.2 bits (63), Expect = 1.1 Identities = 5/39 (12%), Positives = 11/39 (28%) Query: 82 FIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120 I + ++ + + G V+V G Sbjct: 15 EITQKWTSQGAGEGLVLLDEPSSTRYPAAPGQDEVVVSG 53 >2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A (A:) Length = 111 Score = 28.4 bits (63), Expect = 1.2 Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 18/126 (14%) Query: 113 GSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILS 172 GS S S + + ++ + +LAR L S+ D I Sbjct: 1 GSSGSSGPGSLSGTEQAEMKMAVISEHLGLSW---------AELARELQFSVEDINRIRV 51 Query: 173 PYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVK 232 + + +S +L ++ +R N +L A + V+ +E + Sbjct: 52 ENPN------SLLEQSVALLNLWVIREGQNAN---MENLYTALQSIDRGEIVNMLEGSGR 102 Query: 233 DPDAIE 238 ++ Sbjct: 103 QSRNLK 108 >1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition domain; NMR {Thermoplasma acidophilum} (A:) Length = 185 Score = 27.7 bits (61), Expect = 1.9 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 120 GISNSDFSYLQN-SFSRFYGNVSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170 D ++ + + D KG++ I + N G SIGDK+ + Sbjct: 35 DAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKV 87 >1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} (A:652-757,A:802-817) Length = 122 Score = 27.7 bits (61), Expect = 1.9 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I A+ GI GD + + + G + Sbjct: 58 VYISPVDAKARGIKDGDIVRVFNDRGQLL 86 >1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:620-780) Length = 161 Score = 27.4 bits (60), Expect = 2.1 Identities = 7/31 (22%), Positives = 13/31 (41%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVTPM 180 +I A GI+ GD + + + G + Sbjct: 50 CLINPADAAARGIADGDVLRVFNDRGQILVG 80 >1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:842-1015) Length = 174 Score = 26.7 bits (58), Expect = 3.4 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I + LA GI+ GD++ + S G + Sbjct: 79 VEISETLAAAKGINNGDRVTVSSKRGFIR 107 >1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} (A:188-246,A:379-429) Length = 110 Score = 26.4 bits (58), Expect = 4.5 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 83 IANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRF 136 +A L+F+ I + F VS G G+L +S F + R Sbjct: 44 LARELEFLRAHISLSKF----VPVSHFFWGVWGLLQVELSPVGFGFADYGRDRL 93 >2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris} (A:31-183) Length = 153 Score = 25.9 bits (57), Expect = 6.8 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 13/47 (27%) Query: 212 QEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRILGNGVVVIDWQ 258 QE + +L+ + ++ + + +G+ VID++ Sbjct: 46 QEGNITIHLQKFIENLDKIYPNRNF-------------SGIGVIDFE 79 >1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} (A:35-193) Length = 159 Score = 25.5 bits (56), Expect = 8.5 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 13/47 (27%) Query: 212 QEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRILGNGVVVIDWQ 258 Q L +L+ + + D GV VID++ Sbjct: 46 QLGNLTKHLQVFRDHLINQIPDKSF-------------PGVGVIDFE 79 >3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium, inhibitor, cell membrane, cytoplasm, hydrolase, membrane, protease, thiol protease; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L (A:210-349) Length = 140 Score = 25.1 bits (54), Expect = 9.7 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Query: 168 INILSPYGDVTPMGMGIRSKSY--TVLGMFRMRFPDY-DNGMVYMSLQEAQLYFNLENAV 224 I I +P+G V G + TV R + ++G +MS + ++ Sbjct: 73 IRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDFLRHY------ 126 Query: 225 SGIEVFVKDPDA 236 S +E+ PD Sbjct: 127 SRLEICNLTPDT 138 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 25.1 bits (54), Expect = 9.9 Identities = 5/72 (6%), Positives = 16/72 (22%), Gaps = 17/72 (23%) Query: 41 MALIVVMSVMNGFREDMIKRV------------LGINGHVVIQQKYYPLVDYQFIANRLD 88 + + + + L + + ++D N LD Sbjct: 216 TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD--EADNMLD 273 Query: 89 ---FIPDVIKVL 97 +++ Sbjct: 274 QQGLGDQSMRIK 285 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.143 0.419 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,206,165 Number of extensions: 103371 Number of successful extensions: 506 Number of sequences better than 10.0: 1 Number of HSP's gapped: 505 Number of HSP's successfully gapped: 23 Length of query: 270 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 183 Effective length of database: 2,015,014 Effective search space: 368747562 Effective search space used: 368747562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.1 bits)