RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.788_1
         (270 letters)



>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB;
           macrolide-specific pump, ABC-type transporter; 2.00A
           {Actinobacillus actinomycetemcomitans} (A:)
          Length = 226

 Score = 63.7 bits (154), Expect = 3e-11
 Identities = 23/230 (10%), Positives = 63/230 (27%), Gaps = 22/230 (9%)

Query: 46  VMSVMNGFREDMIKRVLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFVSGQAF 105
           ++  + G   + +    G        +    L      AN L     +  V P  S    
Sbjct: 4   ILENIRGIGTNTMTIFNGNGFGDRRSRHIQNL--KISDANTLSKQSYIQSVTPNTSSSGI 61

Query: 106 VSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRG-KGVIIGKDLARNL---G 161
           +   +   +   + GI    F        +      +D D+  + V++ +   + +    
Sbjct: 62  LVVGNKSFTSANLYGIGEQYFDVEGLKLKQGRLLTEDDVDQSNQVVVLDESAKKAIFANE 121

Query: 162 ISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLE 221
             +G  +                  +   V+   ++     ++  +Y             
Sbjct: 122 NPLGKTVIF-----------NKRPFRVIGVVSDQQLGGFPGNSLNLYSPYSTVLNKITGG 170

Query: 222 NAVSGIEVFVKDPDAIEKTHENIVRIL-----GNGVVVIDWQQRYQIFFS 266
           + +  I V + D        +++  +L          +++     Q   +
Sbjct: 171 SRIGSITVKISDDVNSTVAEKSLTELLKSLHGKKDFFIMNSDTIKQTIEN 220


>3is6_A Putative permease protein, ABC transporter; domain, PSI,
           MCSG, structural genomics, midwest center for structural
           genomics; 1.95A {Porphyromonas gingivalis W83} (A:)
          Length = 244

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 26/215 (12%), Positives = 47/215 (21%), Gaps = 26/215 (12%)

Query: 47  MSVMNGFRE-DMIKRV-----LGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIKVLPFV 100
            S    F   D I  V              ++  +  V         + IP V       
Sbjct: 2   RSYERDFPHHDRICIVKTHGTRQSQEGDKPEELDFSQVSGGVAPAIQEEIPGVELATRTT 61

Query: 101 SGQAFVSGLSSGG--SGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLAR 158
                   +                +             G   +        +I + LAR
Sbjct: 62  LYGTSKX-ILEDNKTYETKTLLAEPAFLDXFGVELI--AGVRDSALRDNXTCLISESLAR 118

Query: 159 N-LGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFR----MRFPDYDNGMVYMSLQE 213
              G  +G ++       D             T+ G+F           D  +       
Sbjct: 119 KXGGDVLGKRLRPAESKSDRA----------ITIGGVFEDLPHNSSIQADXLLPITWXPA 168

Query: 214 AQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL 248
             L   + N      V ++   + E   E ++   
Sbjct: 169 ESLNNWIGNDRYIAYVRLRPGVSPESLDEALLEXQ 203


>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty
           acid biosynthesis, antibiotic, acyltransferase,
           cytoplasm, lipid synthesis; 2.70A {Haemophilus
           influenzae} (A:1-20,A:55-323)
          Length = 289

 Score = 30.2 bits (66), Expect = 0.30
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 149 GVIIGKDLARNLGISIGDKINILSPYGDVTPMGMGIR 185
             +   +  R+  I  G  + + +  G  T     +R
Sbjct: 252 VPVALDEAIRDGRIQRGQLLLLEAFGGGWTWGSALVR 288


>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase,
           heme, heme-AS, integral membrane protein,
           oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus
           thermophilus} (A:1-106,A:343-507)
          Length = 271

 Score = 29.2 bits (65), Expect = 0.66
 Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 22  NAFISIASFISFIGVMIGVMALIVVMSVMNG 52
             F  +A  +  + +++      +   +++ 
Sbjct: 237 MVFNVLAGIVLLVALLL--FIYGLFSVLLSR 265


>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus}
           (A:1-108)
          Length = 108

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170
           V +D       I + + +  NL + +GD I+I
Sbjct: 71  VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI 102


>2nsf_A Hypothetical protein CGL3021; metal binding, isomerase;
           1.75A {Corynebacterium glutamicum} (A:178-261)
          Length = 84

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 5/39 (12%), Positives = 11/39 (28%)

Query: 82  FIANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRG 120
            I  +         ++      +     + G   V+V G
Sbjct: 15  EITQKWTSQGAGEGLVLLDEPSSTRYPAAPGQDEVVVSG 53


>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; NMR {Homo sapiens} PDB: 2yvi_A (A:)
          Length = 111

 Score = 28.4 bits (63), Expect = 1.2
 Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 18/126 (14%)

Query: 113 GSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILS 172
           GS       S S     +   +    ++   +          +LAR L  S+ D   I  
Sbjct: 1   GSSGSSGPGSLSGTEQAEMKMAVISEHLGLSW---------AELARELQFSVEDINRIRV 51

Query: 173 PYGDVTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVK 232
              +       +  +S  +L ++ +R     N     +L  A    +    V+ +E   +
Sbjct: 52  ENPN------SLLEQSVALLNLWVIREGQNAN---MENLYTALQSIDRGEIVNMLEGSGR 102

Query: 233 DPDAIE 238
               ++
Sbjct: 103 QSRNLK 108


>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM,
           substrate recognition domain; NMR {Thermoplasma
           acidophilum} (A:)
          Length = 185

 Score = 27.7 bits (61), Expect = 1.9
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 120 GISNSDFSYLQN-SFSRFYGNVSNDFDRGKGVI-IGKDLARNLGISIGDKINI 170
                D   ++    +      +   D  KG++ I   +  N G SIGDK+ +
Sbjct: 35  DAEIGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKV 87


>1tmo_A TMAO reductase, trimethylamine N-oxide reductase;
           oxidoreductase, oxotransferase, molybdoenzyme,
           MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella
           massilia} (A:652-757,A:802-817)
          Length = 122

 Score = 27.7 bits (61), Expect = 1.9
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
           V I    A+  GI  GD + + +  G + 
Sbjct: 58  VYISPVDAKARGIKDGDIVRVFNDRGQLL 86


>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum
           cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET:
           GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} (A:620-780)
          Length = 161

 Score = 27.4 bits (60), Expect = 2.1
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVTPM 180
            +I    A   GI+ GD + + +  G +   
Sbjct: 50  CLINPADAAARGIADGDVLRVFNDRGQILVG 80


>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major
           subunit; oxidoreductase, selenium, selenocysteine,
           seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
           coli} (A:842-1015)
          Length = 174

 Score = 26.7 bits (58), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
           V I + LA   GI+ GD++ + S  G + 
Sbjct: 79  VEISETLAAAKGINNGDRVTVSSKRGFIR 107


>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein
           kinase fold, transferase; 2.02A {Caenorhabditis elegans}
           (A:188-246,A:379-429)
          Length = 110

 Score = 26.4 bits (58), Expect = 4.5
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 83  IANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRF 136
           +A  L+F+   I +  F      VS    G  G+L   +S   F +      R 
Sbjct: 44  LARELEFLRAHISLSKF----VPVSHFFWGVWGLLQVELSPVGFGFADYGRDRL 93


>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase;
           HET: MES; 2.00A {Vespula vulgaris} (A:31-183)
          Length = 153

 Score = 25.9 bits (57), Expect = 6.8
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 13/47 (27%)

Query: 212 QEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRILGNGVVVIDWQ 258
           QE  +  +L+  +  ++    + +              +G+ VID++
Sbjct: 46  QEGNITIHLQKFIENLDKIYPNRNF-------------SGIGVIDFE 79


>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM
           barrel, glycosidase family 56, allergen, hydrolase;
           1.60A {Apis mellifera} (A:35-193)
          Length = 159

 Score = 25.5 bits (56), Expect = 8.5
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 13/47 (27%)

Query: 212 QEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRILGNGVVVIDWQ 258
           Q   L  +L+     +   + D                 GV VID++
Sbjct: 46  QLGNLTKHLQVFRDHLINQIPDKSF-------------PGVGVIDFE 79


>3bow_A Calpain-2 catalytic subunit; cysteine protease, calcium,
           inhibitor, cell membrane, cytoplasm, hydrolase,
           membrane, protease, thiol protease; 2.40A {Rattus
           norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
           (A:210-349)
          Length = 140

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 168 INILSPYGDVTPMGMGIRSKSY--TVLGMFRMRFPDY-DNGMVYMSLQEAQLYFNLENAV 224
           I I +P+G V   G    +     TV    R    +  ++G  +MS  +   ++      
Sbjct: 73  IRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDFLRHY------ 126

Query: 225 SGIEVFVKDPDA 236
           S +E+    PD 
Sbjct: 127 SRLEICNLTPDT 138


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 25.1 bits (54), Expect = 9.9
 Identities = 5/72 (6%), Positives = 16/72 (22%), Gaps = 17/72 (23%)

Query: 41  MALIVVMSVMNGFREDMIKRV------------LGINGHVVIQQKYYPLVDYQFIANRLD 88
             +     + +   +                  L     +  +     ++D     N LD
Sbjct: 216 TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD--EADNMLD 273

Query: 89  ---FIPDVIKVL 97
                   +++ 
Sbjct: 274 QQGLGDQSMRIK 285


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.143    0.419 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,206,165
Number of extensions: 103371
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 23
Length of query: 270
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 183
Effective length of database: 2,015,014
Effective search space: 368747562
Effective search space used: 368747562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)