RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.788_1 (270 letters) >3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans} Length = 226 Score = 40.6 bits (94), Expect = 4e-04 Identities = 19/169 (11%), Positives = 50/169 (29%), Gaps = 15/169 (8%) Query: 84 ANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSND 143 AN L + V P S + + + + GI F + +D Sbjct: 40 ANTLSKQSYIQSVTPNTSSSGILVVGNKSFTSANLYGIGEQYFDVEGLKLKQGRLLTEDD 99 Query: 144 FDRG-KGVIIGKDLARNLGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMR---F 199 D+ + V++ + + + + + + + V+G+ + Sbjct: 100 VDQSNQVVVLDESAKKAIF-----------ANENPLGKTVIFNKRPFRVIGVVSDQQLGG 148 Query: 200 PDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL 248 ++ +Y + + I V + D +++ +L Sbjct: 149 FPGNSLNLYSPYSTVLNKITGGSRIGSITVKISDDVNSTVAEKSLTELL 197 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.008 Identities = 39/180 (21%), Positives = 55/180 (30%), Gaps = 71/180 (39%) Query: 14 RYLFSNRK----NAFISIAS-F---------------ISFIGVMIGVMAL-IVVMSVMNG 52 R FS RK N F+ +AS F + V + I V +G Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465 Query: 53 FREDMIKRVLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIK-----VLPFVSGQAFVS 107 D+ RVL + + ++ +VD I + + + +L F G Sbjct: 466 --SDL--RVLSGS---ISER----IVD-CIIRLPVKW-ETTTQFKATHILDFGPG----- 507 Query: 108 GLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKG--VIIGKDLARNLGISIG 165 G S G GVL N D G G VI+ L N G Sbjct: 508 GAS--GLGVLTH--RNKD---------------------GTGVRVIVAGTLDINPDDDYG 542 >1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A* Length = 806 Score = 32.5 bits (73), Expect = 0.11 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179 V +D I + + + NL + +GD I+I P DV Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110 >3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* Length = 783 Score = 30.4 bits (67), Expect = 0.45 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 128 YLQNSFSRFYGNVSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVT 178 YL+ + + + V + + + + AR + G ++ + +P+G V Sbjct: 693 YLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVE 744 >1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} SCOP: b.52.2.3 c.37.1.20 d.31.1.1 PDB: 1s3s_A* 2pjh_B Length = 458 Score = 30.0 bits (67), Expect = 0.56 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179 V +D I + + + NL + +GD I+I P DV Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110 >2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12} Length = 792 Score = 28.9 bits (63), Expect = 1.1 Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 + I A+ + GDK+ ++S G+V Sbjct: 710 LFIHPLDAKARDLRRGDKVKVVSRRGEVI 738 >1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 Length = 802 Score = 28.8 bits (63), Expect = 1.2 Identities = 6/29 (20%), Positives = 17/29 (58%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 + + AR+ G++ G ++ ++S G++ Sbjct: 720 CFMHPEDARSRGLNRGSEVRVISRRGEIR 748 >1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase, glycoprotein, cellulose degradation, enzyme, reaction center; HET: NAG; 1.32A {Phanerochaete chrysosporium} SCOP: b.29.1.10 PDB: 1h46_X* 1z3t_A* 1z3v_A* 1z3w_A* Length = 431 Score = 28.9 bits (64), Expect = 1.3 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 10/109 (9%) Query: 95 KVLPFVSGQAFVSGL----SSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGV 150 K + F++G+A V S+ G+G S D N + F + G+ Sbjct: 175 KDIKFINGEANVGNWTETGSNTGTGSYGTCCSEMDIWEANNDAAAFTPHPCTT--TGQTR 232 Query: 151 IIGKDLARNLGISIGDKINILS-PYGDVTPMGMGI---RSKSYTVLGMF 195 G D ARN G+ GD + S GD T +G G+ SK +TV+ F Sbjct: 233 CSGDDCARNTGLCDGDGCDFNSFRMGDKTFLGKGMTVDTSKPFTVVTQF 281 >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 Score = 28.8 bits (64), Expect = 1.3 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179 V +D I + + + NL + +GD I+I P DV Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110 >1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A* Length = 780 Score = 28.7 bits (63), Expect = 1.4 Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 +I A GI+ GD + + + G + Sbjct: 669 CLINPADAAARGIADGDVLRVFNDRGQIL 697 >1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Length = 1015 Score = 28.9 bits (63), Expect = 1.4 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I + LA GI+ GD++ + S G + Sbjct: 920 VEISETLAAAKGINNGDRVTVSSKRGFIR 948 >1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* Length = 1247 Score = 28.4 bits (62), Expect = 1.8 Identities = 9/29 (31%), Positives = 17/29 (58%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V + + A++LGI+ D I + + G +T Sbjct: 1118 VWLSEADAKDLGIADNDWIEVFNSNGALT 1146 >2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723 Score = 28.5 bits (62), Expect = 1.8 Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I ++ A GI GD + + + + Sbjct: 643 VEINEEDAARTGIKHGDSVIVETRRDAME 671 >1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1 Length = 829 Score = 28.1 bits (61), Expect = 1.9 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I A+ GI GD + + + G + Sbjct: 709 VYISPVDAKARGIKDGDIVRVFNDRGQLL 737 >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum usda 110} SCOP: b.92.1.4 c.1.9.9 Length = 475 Score = 28.0 bits (60), Expect = 2.0 Identities = 7/27 (25%), Positives = 12/27 (44%) Query: 230 FVKDPDAIEKTHENIVRILGNGVVVID 256 FV DP + R +G++V+ Sbjct: 15 FVDDPWKHIGNEQAAARFHQDGLMVVT 41 >1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8 Length = 342 Score = 28.1 bits (63), Expect = 2.1 Identities = 8/30 (26%), Positives = 16/30 (53%) Query: 143 DFDRGKGVIIGKDLARNLGISIGDKINILS 172 D+ GK V + + A LG+ G + +++ Sbjct: 310 DWAPGKPVALSVEAAEALGVGEGASVRLVA 339 >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* Length = 566 Score = 28.3 bits (63), Expect = 2.2 Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%) Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNG 52 N S+ +F+SF + ++ ++ G Sbjct: 494 NFVSSLGAFLSFASFLF--FLGVIFYTLTRG 522 >1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S] cluster, rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Length = 825 Score = 28.1 bits (61), Expect = 2.3 Identities = 5/29 (17%), Positives = 14/29 (48%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 + + D + L ++ GD + + + +G Sbjct: 728 IEMNPDDCKQLDVTGGDIVEVYNDFGSTF 756 >2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Length = 715 Score = 27.7 bits (60), Expect = 2.5 Identities = 7/29 (24%), Positives = 12/29 (41%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 I + A+ LGI + + S G + Sbjct: 608 AQINTEDAKRLGIEDEALVWVHSRKGKII 636 >1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Length = 977 Score = 27.8 bits (60), Expect = 2.5 Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 + ++LA GI GDK+ + S G + Sbjct: 882 CEMSEELATLRGIKNGDKVILESVRGKLW 910 >2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Length = 727 Score = 27.8 bits (60), Expect = 2.8 Identities = 6/29 (20%), Positives = 16/29 (55%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 ++ A++LG+ G+ I + + +G + Sbjct: 627 ALLHPKTAQSLGLPSGEWIWVETTHGRLK 655 >2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} Length = 976 Score = 27.7 bits (60), Expect = 3.3 Identities = 8/29 (27%), Positives = 12/29 (41%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V + A LGI GD + + + D Sbjct: 874 VHMNSKDAAELGIKDGDMAKLFNDFADCE 902 >1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Length = 875 Score = 27.4 bits (59), Expect = 3.4 Identities = 8/29 (27%), Positives = 11/29 (37%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 + + A GI GD I + G V Sbjct: 772 MRVNSIDAEARGIKNGDLIRAYNDRGSVI 800 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.5 bits (60), Expect = 3.8 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 23/105 (21%) Query: 102 GQAFVSGLSSGGSGVLVRGISNSDFS-----YLQNSFSRFYGNVSN----DFDRGKGVII 152 G + GL GG+ V+V + S FS Y Q+ ++++ S F++G + Sbjct: 490 GAEVLQGLLQGGAKVVV---TTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDV 546 Query: 153 GK------DLARNLGISIGDKINILSPYGDVTPMGM---GIRSKS 188 D +N G +G ++ + P+ + G+ I SKS Sbjct: 547 EALIEFIYDTEKNGG--LGWDLDAIIPFAAIPEQGIELEHIDSKS 589 Score = 27.5 bits (60), Expect = 3.8 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 38/155 (24%) Query: 118 VRGISNS--DFSYLQN--SFSRFYGNVSNDFDRGKG----VIIGKDLARNLGISI----- 164 ++ SN+ +F + + SR N F +G +I+ DLA +G+ I Sbjct: 1147 MKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVA 1206 Query: 165 -----GDKINILSPYGDVTPM-GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQ----EA 214 DKI G P G GI + + + P+ + M Y Q EA Sbjct: 1207 MAATATDKI------GRSVPAPGKGILTTAREHHSSVKYASPNLN--MKYRKRQLVTREA 1258 Query: 215 QLYFNLENAVSGI-----EVFVKDPDA--IEKTHE 242 Q+ +EN + + E+ +D + +E+T E Sbjct: 1259 QIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1293 >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218 Score = 27.4 bits (59), Expect = 3.8 Identities = 14/134 (10%), Positives = 46/134 (34%), Gaps = 10/134 (7%) Query: 117 LVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGD 176 + + + + + + + + + G+ +I+ D + G ++ Sbjct: 82 ISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQ 141 Query: 177 VTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQL----------YFNLENAVSG 226 V+ +G+G+ + + D + ++ L E Y ++N+ S Sbjct: 142 VSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSA 201 Query: 227 IEVFVKDPDAIEKT 240 + ++ + K+ Sbjct: 202 QKAISQEISKMAKS 215 >2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* Length = 765 Score = 27.0 bits (58), Expect = 4.1 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 V I K+ A+ LG+ GD + +++ G Sbjct: 649 VWIHKEEAKRLGLKEGDYVMLVNQDGVKE 677 >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65 Score = 27.2 bits (60), Expect = 4.2 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 5/39 (12%) Query: 209 MSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRI 247 M+L E+ N+E + + + D I + + Sbjct: 1 MTLDESCKILNIEESKGDL-----NMDKINNRFNYLFEV 34 >2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} Length = 146 Score = 26.8 bits (59), Expect = 4.7 Identities = 7/29 (24%), Positives = 16/29 (55%) Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178 I ++ LG+ GD++ + + +G+V Sbjct: 55 AEINEEDWNALGLQEGDRVKVKTEFGEVV 83 >1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1 PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A* Length = 568 Score = 26.9 bits (59), Expect = 4.8 Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%) Query: 15 YLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFR 54 Y + F +A + + +++ + +++ R Sbjct: 466 YPHAAVPMVFNVLAGIVLLVALLL--FIYGLFSVLLSRER 503 >1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition domain; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A Length = 185 Score = 26.0 bits (57), Expect = 9.5 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 145 DRGKGVI-IGKDLARNLGISIGDKINI 170 D KG++ I + N G SIGDK+ + Sbjct: 61 DENKGIVRIDSVMRNNCGASIGDKVKV 87 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.143 0.419 Gapped Lambda K H 0.267 0.0513 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,525,550 Number of extensions: 124302 Number of successful extensions: 684 Number of sequences better than 10.0: 1 Number of HSP's gapped: 680 Number of HSP's successfully gapped: 37 Length of query: 270 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 179 Effective length of database: 3,487,026 Effective search space: 624177654 Effective search space used: 624177654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.9 bits)