RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.788_1
(270 letters)
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB;
macrolide-specific pump, ABC-type transporter; 2.00A
{Actinobacillus actinomycetemcomitans}
Length = 226
Score = 40.6 bits (94), Expect = 4e-04
Identities = 19/169 (11%), Positives = 50/169 (29%), Gaps = 15/169 (8%)
Query: 84 ANRLDFIPDVIKVLPFVSGQAFVSGLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSND 143
AN L + V P S + + + + GI F + +D
Sbjct: 40 ANTLSKQSYIQSVTPNTSSSGILVVGNKSFTSANLYGIGEQYFDVEGLKLKQGRLLTEDD 99
Query: 144 FDRG-KGVIIGKDLARNLGISIGDKINILSPYGDVTPMGMGIRSKSYTVLGMFRMR---F 199
D+ + V++ + + + + + + + V+G+ +
Sbjct: 100 VDQSNQVVVLDESAKKAIF-----------ANENPLGKTVIFNKRPFRVIGVVSDQQLGG 148
Query: 200 PDYDNGMVYMSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRIL 248
++ +Y + + I V + D +++ +L
Sbjct: 149 FPGNSLNLYSPYSTVLNKITGGSRIGSITVKISDDVNSTVAEKSLTELL 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.1 bits (83), Expect = 0.008
Identities = 39/180 (21%), Positives = 55/180 (30%), Gaps = 71/180 (39%)
Query: 14 RYLFSNRK----NAFISIAS-F---------------ISFIGVMIGVMAL-IVVMSVMNG 52
R FS RK N F+ +AS F + V + I V +G
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 53 FREDMIKRVLGINGHVVIQQKYYPLVDYQFIANRLDFIPDVIK-----VLPFVSGQAFVS 107
D+ RVL + + ++ +VD I + + + +L F G
Sbjct: 466 --SDL--RVLSGS---ISER----IVD-CIIRLPVKW-ETTTQFKATHILDFGPG----- 507
Query: 108 GLSSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKG--VIIGKDLARNLGISIG 165
G S G GVL N D G G VI+ L N G
Sbjct: 508 GAS--GLGVLTH--RNKD---------------------GTGVRVIVAGTLDINPDDDYG 542
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.5 bits (73), Expect = 0.11
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179
V +D I + + + NL + +GD I+I P DV
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_3* 3iam_3* 3ias_3*
Length = 783
Score = 30.4 bits (67), Expect = 0.45
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 128 YLQNSFSRFYGNVSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVT 178
YL+ + + + V + + + + AR + G ++ + +P+G V
Sbjct: 693 YLRPTMWKAHQAVGKAQEAARAELWAHPETARAEALPEGAQVAVETPFGRVE 744
>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} SCOP: b.52.2.3
c.37.1.20 d.31.1.1 PDB: 1s3s_A* 2pjh_B
Length = 458
Score = 30.0 bits (67), Expect = 0.56
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179
V +D I + + + NL + +GD I+I P DV
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110
>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET:
MGD; 2.50A {Escherichia coli K12}
Length = 792
Score = 28.9 bits (63), Expect = 1.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+ I A+ + GDK+ ++S G+V
Sbjct: 710 LFIHPLDAKARDLRRGDKVKVVSRRGEVI 738
>1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1
Length = 802
Score = 28.8 bits (63), Expect = 1.2
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+ + AR+ G++ G ++ ++S G++
Sbjct: 720 CFMHPEDARSRGLNRGSEVRVISRRGEIR 748
>1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase,
glycoprotein, cellulose degradation, enzyme, reaction
center; HET: NAG; 1.32A {Phanerochaete chrysosporium}
SCOP: b.29.1.10 PDB: 1h46_X* 1z3t_A* 1z3v_A* 1z3w_A*
Length = 431
Score = 28.9 bits (64), Expect = 1.3
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 95 KVLPFVSGQAFVSGL----SSGGSGVLVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGV 150
K + F++G+A V S+ G+G S D N + F + G+
Sbjct: 175 KDIKFINGEANVGNWTETGSNTGTGSYGTCCSEMDIWEANNDAAAFTPHPCTT--TGQTR 232
Query: 151 IIGKDLARNLGISIGDKINILS-PYGDVTPMGMGI---RSKSYTVLGMF 195
G D ARN G+ GD + S GD T +G G+ SK +TV+ F
Sbjct: 233 CSGDDCARNTGLCDGDGCDFNSFRMGDKTFLGKGMTVDTSKPFTVVTQF 281
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 140 VSNDFDRGKGVI-IGKDLARNLGISIGDKINILSPYGDVTP 179
V +D I + + + NL + +GD I+I P DV
Sbjct: 71 VLSDDTCSDEKIRMNRVVRNNLRVRLGDVISI-QPCPDVKY 110
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopterin, MGD, oxidoreductase; HET: GLC MGD
EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2
c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A*
3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 28.7 bits (63), Expect = 1.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+I A GI+ GD + + + G +
Sbjct: 669 CLINPADAAARGIADGDVLRVFNDRGQIL 697
>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 28.9 bits (63), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V I + LA GI+ GD++ + S G +
Sbjct: 920 VEISETLAAAKGINNGDRVTVSSKRGFIR 948
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A*
Length = 1247
Score = 28.4 bits (62), Expect = 1.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V + + A++LGI+ D I + + G +T
Sbjct: 1118 VWLSEADAKDLGIADNDWIEVFNSNGALT 1146
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 28.5 bits (62), Expect = 1.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V I ++ A GI GD + + + +
Sbjct: 643 VEINEEDAARTGIKHGDSVIVETRRDAME 671
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase,
oxotransferase, molybdoenzyme, MO-cofactor, molybdenum;
HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2
c.81.1.1
Length = 829
Score = 28.1 bits (61), Expect = 1.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V I A+ GI GD + + + G +
Sbjct: 709 VYISPVDAKARGIKDGDIVRVFNDRGQLL 737
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum usda 110} SCOP:
b.92.1.4 c.1.9.9
Length = 475
Score = 28.0 bits (60), Expect = 2.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 230 FVKDPDAIEKTHENIVRILGNGVVVID 256
FV DP + R +G++V+
Sbjct: 15 FVDDPWKHIGNEQAAARFHQDGLMVVT 41
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics,
acyltransferase, arginine metabolism, PSI, protein
structure initiative; 1.70A {Pseudomonas aeruginosa}
SCOP: d.108.1.8
Length = 342
Score = 28.1 bits (63), Expect = 2.1
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 143 DFDRGKGVIIGKDLARNLGISIGDKINILS 172
D+ GK V + + A LG+ G + +++
Sbjct: 310 DWAPGKPVALSVEAAEALGVGEGASVRLVA 339
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 28.3 bits (63), Expect = 2.2
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 22 NAFISIASFISFIGVMIGVMALIVVMSVMNG 52
N S+ +F+SF + ++ ++ G
Sbjct: 494 NFVSSLGAFLSFASFLF--FLGVIFYTLTRG 522
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe- 2S]
cluster, rieske, oxidoreductase; HET: MGD; 1.64A
{Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB:
1g8j_A*
Length = 825
Score = 28.1 bits (61), Expect = 2.3
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+ + D + L ++ GD + + + +G
Sbjct: 728 IEMNPDDCKQLDVTGGDIVEVYNDFGSTF 756
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic,
complete proteome, direct protein sequencing, Fe4S4,
iron, iron sulfur cluster; HET: 2MD MGD; 2.27A
{Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A*
1fdo_A* 1aa6_A*
Length = 715
Score = 27.7 bits (60), Expect = 2.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
I + A+ LGI + + S G +
Sbjct: 608 AQINTEDAKRLGIEDEALVWVHSRKGKII 636
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Length = 977
Score = 27.8 bits (60), Expect = 2.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+ ++LA GI GDK+ + S G +
Sbjct: 882 CEMSEELATLRGIKNGDKVILESVRGKLW 910
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family,
iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter
acetylenicus}
Length = 727
Score = 27.8 bits (60), Expect = 2.8
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
++ A++LG+ G+ I + + +G +
Sbjct: 627 ALLHPKTAQSLGLPSGEWIWVETTHGRLK 655
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus
SP}
Length = 976
Score = 27.7 bits (60), Expect = 3.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V + A LGI GD + + + D
Sbjct: 874 VHMNSKDAAELGIKDGDMAKLFNDFADCE 902
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 27.4 bits (59), Expect = 3.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
+ + A GI GD I + G V
Sbjct: 772 MRVNSIDAEARGIKNGDLIRAYNDRGSVI 800
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (60), Expect = 3.8
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 102 GQAFVSGLSSGGSGVLVRGISNSDFS-----YLQNSFSRFYGNVSN----DFDRGKGVII 152
G + GL GG+ V+V + S FS Y Q+ ++++ S F++G +
Sbjct: 490 GAEVLQGLLQGGAKVVV---TTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDV 546
Query: 153 GK------DLARNLGISIGDKINILSPYGDVTPMGM---GIRSKS 188
D +N G +G ++ + P+ + G+ I SKS
Sbjct: 547 EALIEFIYDTEKNGG--LGWDLDAIIPFAAIPEQGIELEHIDSKS 589
Score = 27.5 bits (60), Expect = 3.8
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 38/155 (24%)
Query: 118 VRGISNS--DFSYLQN--SFSRFYGNVSNDFDRGKG----VIIGKDLARNLGISI----- 164
++ SN+ +F + + SR N F +G +I+ DLA +G+ I
Sbjct: 1147 MKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVA 1206
Query: 165 -----GDKINILSPYGDVTPM-GMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQ----EA 214
DKI G P G GI + + + P+ + M Y Q EA
Sbjct: 1207 MAATATDKI------GRSVPAPGKGILTTAREHHSSVKYASPNLN--MKYRKRQLVTREA 1258
Query: 215 QLYFNLENAVSGI-----EVFVKDPDA--IEKTHE 242
Q+ +EN + + E+ +D + +E+T E
Sbjct: 1259 QIKDWVENELEALKLEAEEIPSEDQNEFLLERTRE 1293
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for structural genomics, MCSG,
PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 27.4 bits (59), Expect = 3.8
Identities = 14/134 (10%), Positives = 46/134 (34%), Gaps = 10/134 (7%)
Query: 117 LVRGISNSDFSYLQNSFSRFYGNVSNDFDRGKGVIIGKDLARNLGISIGDKINILSPYGD 176
+ + + + + + + + + G+ +I+ D + G ++
Sbjct: 82 ISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQ 141
Query: 177 VTPMGMGIRSKSYTVLGMFRMRFPDYDNGMVYMSLQEAQL----------YFNLENAVSG 226
V+ +G+G+ + + D + ++ L E Y ++N+ S
Sbjct: 142 VSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSA 201
Query: 227 IEVFVKDPDAIEKT 240
+ ++ + K+
Sbjct: 202 QKAISQEISKMAKS 215
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 27.0 bits (58), Expect = 4.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
V I K+ A+ LG+ GD + +++ G
Sbjct: 649 VWIHKEEAKRLGLKEGDYVMLVNQDGVKE 677
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 27.2 bits (60), Expect = 4.2
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 209 MSLQEAQLYFNLENAVSGIEVFVKDPDAIEKTHENIVRI 247
M+L E+ N+E + + + D I + +
Sbjct: 1 MTLDESCKILNIEESKGDL-----NMDKINNRFNYLFEV 34
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2);
beta-barrel, structural genomics, PSI-2, protein
structure initiative; NMR {Archaeoglobus fulgidus}
Length = 146
Score = 26.8 bits (59), Expect = 4.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 150 VIIGKDLARNLGISIGDKINILSPYGDVT 178
I ++ LG+ GD++ + + +G+V
Sbjct: 55 AEINEEDWNALGLQEGDRVKVKTEFGEVV 83
>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme,
heme-AS, integral membrane protein, oxidoreductase; HET:
BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1
PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A*
3eh4_A*
Length = 568
Score = 26.9 bits (59), Expect = 4.8
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 15 YLFSNRKNAFISIASFISFIGVMIGVMALIVVMSVMNGFR 54
Y + F +A + + +++ + +++ R
Sbjct: 466 YPHAAVPMVFNVLAGIVLLVALLL--FIYGLFSVLLSRER 503
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate
recognition domain; NMR {Thermoplasma acidophilum} SCOP:
b.52.2.3 d.31.1.1 PDB: 1cz5_A
Length = 185
Score = 26.0 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 145 DRGKGVI-IGKDLARNLGISIGDKINI 170
D KG++ I + N G SIGDK+ +
Sbjct: 61 DENKGIVRIDSVMRNNCGASIGDKVKV 87
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.143 0.419
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,525,550
Number of extensions: 124302
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 37
Length of query: 270
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 179
Effective length of database: 3,487,026
Effective search space: 624177654
Effective search space used: 624177654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.9 bits)