Query 537021.9.peg.789_1
Match_columns 143
No_of_seqs 109 out of 6853
Neff 8.5
Searched_HMMs 13730
Date Wed May 25 08:12:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_789.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2daha1 a.5.2.1 (A:8-48) Ubiqu 11.1 36 0.0027 11.7 2.3 22 28-49 3-24 (41)
2 d1veja1 a.5.2.1 (A:8-68) 49314 10.3 39 0.0028 11.6 1.5 20 28-47 23-42 (61)
3 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 10.1 40 0.0029 11.6 1.5 21 27-47 8-28 (50)
4 d2bwba1 a.5.2.1 (A:328-371) DS 7.1 55 0.004 10.8 2.4 22 28-49 6-27 (44)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 6.6 58 0.0042 10.7 2.8 35 28-62 112-146 (203)
6 d1oqya2 a.5.2.1 (A:317-360) DN 5.4 69 0.005 10.3 1.0 22 28-49 5-26 (44)
7 d1ijwc_ a.4.1.2 (C:) HIN recom 4.4 82 0.006 9.9 2.1 24 25-48 8-31 (47)
8 d1ttea1 a.5.2.1 (A:161-215) Ub 4.2 87 0.0064 9.8 2.0 24 20-43 16-39 (55)
9 d1l3la1 a.4.6.2 (A:170-234) Qu 3.8 99 0.0072 9.5 1.3 23 26-48 7-29 (65)
10 d1fsea_ a.4.6.2 (A:) Germinati 3.4 1.1E+02 0.0082 9.2 1.3 22 26-47 7-28 (67)
No 1
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.14 E-value=36 Score=11.74 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=16.7
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
.+|...||.+|+++.+.-..-+
T Consensus 3 ~~QL~~L~~MGF~d~~~Ni~AL 24 (41)
T d2daha1 3 QVQLEQLRSMGFLNREANLQAL 24 (41)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8999999985999789999999
No 2
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.31 E-value=39 Score=11.59 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999999807552222036
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSI 47 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~ 47 (143)
.+|...|+.+|+++++.-..
T Consensus 23 ~~QL~qL~eMGF~d~~~Nl~ 42 (61)
T d1veja1 23 QQELEELKALGFANRDANLQ 42 (61)
T ss_dssp HHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999938997899999
No 3
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.15 E-value=40 Score=11.56 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999999999807552222036
Q 537021.9.peg.7 27 RRRDIAILRTMGARISSIMSI 47 (143)
Q Consensus 27 R~~eigilkalG~s~~~I~~~ 47 (143)
-.+|...|+.+|+++++.-..
T Consensus 8 y~~QL~qL~~MGF~d~~~Ni~ 28 (50)
T d2dnaa1 8 FSKEMECLQAMGFVNYNANLQ 28 (50)
T ss_dssp THHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999949997999999
No 4
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.08 E-value=55 Score=10.85 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
.+|...|+.+|+++.+.-..-+
T Consensus 6 ~~QL~qL~~MGF~d~~~Ni~AL 27 (44)
T d2bwba1 6 EHQLRQLNDMGFFDFDRNVAAL 27 (44)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999994999689999999
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=6.64 E-value=58 Score=10.73 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999807552222036888987653233456
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGM 62 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~~E~~~l~~ig~i~ 62 (143)
++..-.-|++|+|++|+.+...+-...-+++....
T Consensus 112 ~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~ 146 (203)
T d3dhwa1 112 TGLIEASRAMGATPMQIVRKVLLPEALPGLVNAAT 146 (203)
T ss_dssp TTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20689998869944424188409976999999999
No 6
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.39 E-value=69 Score=10.33 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9999999980755222203688
Q 537021.9.peg.7 28 RRDIAILRTMGARISSIMSIFF 49 (143)
Q Consensus 28 ~~eigilkalG~s~~~I~~~~~ 49 (143)
+.-|.-|+++|+++......|+
T Consensus 5 ~~aIeRL~~LGF~r~~viqay~ 26 (44)
T d1oqya2 5 KEAIERLKALGFPESLVIQAYF 26 (44)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTS
T ss_pred HHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999983997778999999
No 7
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=4.41 E-value=82 Score=9.94 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 999999999998075522220368
Q 537021.9.peg.7 25 QERRRDIAILRTMGARISSIMSIF 48 (143)
Q Consensus 25 ~~R~~eigilkalG~s~~~I~~~~ 48 (143)
.++..|.--|.+-|.+.++|-..|
T Consensus 8 ~~q~~~a~~l~~~G~s~~~iA~~~ 31 (47)
T d1ijwc_ 8 KHEQEQISRLLEKGHPRQQLAIIF 31 (47)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999999999998899799999997
No 8
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.21 E-value=87 Score=9.81 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999999980755222
Q 537021.9.peg.7 20 LVMLVQERRRDIAILRTMGARISS 43 (143)
Q Consensus 20 ~~~~i~~R~~eigilkalG~s~~~ 43 (143)
+...-.+|.|-+.+||-+|.++.+
T Consensus 16 f~~mGF~rdKvI~VLrrlgik~~~ 39 (55)
T d1ttea1 16 FESQGFEKDKIVEVLRRLGVKSLD 39 (55)
T ss_dssp HHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred HHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 998389801299999996867788
No 9
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.81 E-value=99 Score=9.54 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999999998075522220368
Q 537021.9.peg.7 26 ERRRDIAILRTMGARISSIMSIF 48 (143)
Q Consensus 26 ~R~~eigilkalG~s~~~I~~~~ 48 (143)
+|.+|+--+-+-|.|.++|-...
T Consensus 7 ~rE~~vl~l~~~G~s~~eIA~~l 29 (65)
T d1l3la1 7 PKEATYLRWIAVGKTMEEIADVE 29 (65)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999369888999997
No 10
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=3.42 E-value=1.1e+02 Score=9.25 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 9999999999807552222036
Q 537021.9.peg.7 26 ERRRDIAILRTMGARISSIMSI 47 (143)
Q Consensus 26 ~R~~eigilkalG~s~~~I~~~ 47 (143)
+|.+|+--+-+-|.+.++|-..
T Consensus 7 ~rE~~vl~l~~~G~s~~eIA~~ 28 (67)
T d1fsea_ 7 KREREVFELLVQDKTTKEIASE 28 (67)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999836989999999
Done!