RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.789_1
(143 letters)
>gnl|CDD|162764 TIGR02212, lolCE, lipoprotein releasing system, transmembrane
protein, LolC/E family. This model describes the LolC
protein, and its paralog LolE found in some species.
These proteins are homologous to permease proteins of
ABC transporters. In some species, two paralogs occur,
designated LolC and LolE. In others, a single form is
found and tends to be designated LolC.
Length = 411
Score = 168 bits (427), Expect = 6e-43
Identities = 68/143 (47%), Positives = 101/143 (70%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
MF+IL+LI+ VAA NI+S+LVM V++++ DIAILRT+GA IM IF + G IG+ GT
Sbjct: 269 MFLILSLIIAVAAFNIVSTLVMAVKDKQGDIAILRTLGATPGQIMRIFIVQGLLIGVIGT 328
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+I+G+L++ N+ I F +GV F+ + Y L LPSK+ ++V II AL LS
Sbjct: 329 LLGVILGVLLALNLTTIINFIEWLIGVKFFNADIYFLDFLPSKLDPLDVLLIIVTALLLS 388
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
LLAT++P+W+A+++ P + LR E
Sbjct: 389 LLATLYPAWRAAKLQPAEALRYE 411
>gnl|CDD|182995 PRK11146, PRK11146, outer membrane-specific lipoprotein transporter
subunit LolE; Provisional.
Length = 412
Score = 108 bits (271), Expect = 7e-25
Identities = 54/142 (38%), Positives = 94/142 (66%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
M++ + L++ VA NI+S+LVM V+++ DIAILRT+GA+ I +IF G G+ G+
Sbjct: 270 MYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAILRTLGAKDGLIRAIFVWYGLLAGLKGS 329
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+++G+++S N+ I K +G + Y + LPS++ W++V +++ AL LS
Sbjct: 330 LIGVVIGVVVSLNLTPIIKGIEKLIGHQFLSGDIYFIDFLPSELHWLDVFYVLVTALVLS 389
Query: 121 LLATIFPSWKASRIDPVKVLRG 142
LLA+ +P+ +AS++DP +VL G
Sbjct: 390 LLASWYPARRASKLDPARVLSG 411
>gnl|CDD|131268 TIGR02213, lolE_release, lipoprotein releasing system,
transmembrane protein LolE. This protein is part of an
unusual ABC transporter complex that releases
lipoproteins from the periplasmic side of the bacterial
inner membrane, rather than transport any substrate
across the inner membrane. In some species, the
permease-like transmembrane protein is represented by
two paralogs, LolC and LolE, both in the LolCDE complex.
This family consists of LolE, as found in E. coli and
related species.
Length = 411
Score = 104 bits (262), Expect = 6e-24
Identities = 47/143 (32%), Positives = 90/143 (62%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
M++ + L++ VA NI+S+L+M V++++ DIAILRT+GA I IF G G+ G+
Sbjct: 269 MYLAMVLVIGVACFNIVSTLIMAVKDKQGDIAILRTLGANDGLIKRIFVWYGLQAGMKGS 328
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+++G++++ N+ + +G + Y + LPS++ W++V ++ ALALS
Sbjct: 329 LIGIVLGVIVALNLTTFIQGIEWVIGHQFLSGDIYFVDFLPSELHWLDVLMVLVTALALS 388
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
L+A+ +P+ +A+++ P +VL
Sbjct: 389 LMASWYPASRAAKLQPAQVLSSH 411
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 96.3 bits (240), Expect = 2e-21
Identities = 54/143 (37%), Positives = 89/143 (62%), Gaps = 10/143 (6%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
M ++L+LIV VAA NII+SL +LV E++ ++AIL+T G IM +F + GA GI G
Sbjct: 267 MGLLLSLIVAVAAFNIITSLGLLVMEKQGEVAILQTQGLTRRQIMMVFMVQGASAGIIGA 326
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G ++G L++ + + + +GV++ D A LP I ++V I +A+A++
Sbjct: 327 LLGALLGALLASQLNNL----MPIIGVLL-DGAA-----LPVAIEPLQVIVIALVAMAIA 376
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
LL+T++PSW+A+ P + LR E
Sbjct: 377 LLSTLYPSWRAAATQPAEALRYE 399
>gnl|CDD|163262 TIGR03434, ADOP, Acidobacterial duplicated orphan permease.
Members of this protein family are found, so far, only
in three species of Acidobacteria, namely Acidobacteria
bacterium Ellin345, Acidobacterium capsulatum ATCC
51196, and Solibacter usitatus Ellin6076, where they
form large paralogous families. Each protein contains
two copies of a domain called the efflux ABC transporter
permease protein (pfam02687). However, unlike other
members of that family (including LolC, FtsX, and MacB),
genes for these proteins are essentially never found
fused or adjacent to ABC transporter ATP-binding protein
(pfam00005) genes. We name this family ADOP, for
Acidobacterial Duplicated Orphan Permease, to reflect
the restricted lineage, internal duplication, lack of
associated ATP-binding cassette proteins, and permease
homology. The function is unknown.
Length = 803
Score = 40.2 bits (95), Expect = 2e-04
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
+F LAL L+AA+ + L V +R R+I I +GA+ ++ + G + AG
Sbjct: 683 LFAALAL--LLAAIGLYGVLAYSVAQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGL 740
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
+G+ + ++ + + L GV D + ++ LA++
Sbjct: 741 AIGLAAALALARLLAS----LLF--GVSPTDPLTFAAV--------------AALLLAVA 780
Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
LLA P+ +A+R+DP+ LR E
Sbjct: 781 LLACYLPARRAARVDPMIALRAE 803
Score = 31.7 bits (73), Expect = 0.067
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 30/151 (19%)
Query: 1 MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
+ + L++L+A N+ + L+ R+R+IA+ +GA ++ + +AG
Sbjct: 274 LLGAVGLVLLIACANVANLLLARAAARQREIAVRLALGAGRGRLVRQLLTESLLLALAGG 333
Query: 61 GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKI-SWVEVS---WIISMA 116
+G+++ +R LL LP+ + E+S ++ A
Sbjct: 334 ALGLLLAYW------GLR----------------LLLALLPASLPRLAEISLDGRVLLFA 371
Query: 117 LALSLLATIF----PSWKASRIDPVKVLRGE 143
LALSLL + P+ +A+R D + L+
Sbjct: 372 LALSLLTGLLFGLAPALQATRSDLAEALKEG 402
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 32.4 bits (74), Expect = 0.042
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 4 ILALIVL-VAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGM 62
++A+I L V + +++ +++ V ER R+I I +GAR S ++ F + + + G +
Sbjct: 527 LVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAL 586
Query: 63 GMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALSLL 122
G+ + +LI+ ++ FL + F A L L S ++ + W+
Sbjct: 587 GITLSLLIAFTLQ----LFLPGWEIG-FSPLALLSAFLCSTVTGILFGWL---------- 631
Query: 123 ATIFPSWKASRIDPVKVLRGE 143
P+ A+R+DPV L E
Sbjct: 632 ----PARNAARLDPVDALARE 648
>gnl|CDD|162113 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger.
Length = 1096
Score = 27.7 bits (61), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1 MFVILALIV---LVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGI 57
+FV LA++ V AL +I+ + + + D+A M A S+ +IG FI
Sbjct: 467 VFVALAIVCDEYFVPALGVITDKLQISE----DVAGATFMAAGGSAPELFTSLIGVFISH 522
Query: 58 AGTGMGMIVG 67
+ G+G IVG
Sbjct: 523 SNVGIGTIVG 532
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
Length = 668
Score = 26.6 bits (58), Expect = 2.2
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 14 LNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMG 63
++++SSL + RR +AI+ M AR+++IM+ + A++G+ G+G
Sbjct: 415 VDVVSSLKRYEESRRLRVAIIHAM-ARMAAIMASTYK--AYLGV---GLG 458
>gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein;
Provisional.
Length = 436
Score = 26.5 bits (58), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 3 VILALIVLVAALNIISSLVMLVQERRR 29
+ILA++V L II+ ++ +RRR
Sbjct: 388 IILAVLVPAIILAIIAVAFFIMVKRRR 414
>gnl|CDD|180055 PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional.
Length = 416
Score = 26.1 bits (58), Expect = 3.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 52 GAFIGIAGTGMGMIVGIL 69
GA +G + TGM + +GIL
Sbjct: 164 GAALGDSNTGMHLAIGIL 181
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 25.3 bits (55), Expect = 6.5
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 IAILRTMGARISSIMSIFFMIGAFIGIAGTGMGM-IVGILIS 71
++ LR RI I FF+ FI I G VGI+++
Sbjct: 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILT 1146
>gnl|CDD|180364 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 25.1 bits (56), Expect = 6.5
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 74 VEAI---RKFF--LHTLGVVIFDTEAY 95
VE I R +F L L +FD Y
Sbjct: 550 VEGIDQTRGWFYTLLALSTALFDRPPY 576
>gnl|CDD|129544 TIGR00452, TIGR00452, methyltransferase, putative. Known examples
to date are restricted to the proteobacteria.
Length = 314
Score = 25.3 bits (55), Expect = 6.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 59 GTGMGMIVGI----LISCNVEAIRKFF 81
G G +VGI L C EA+RK
Sbjct: 141 GHGAKSLVGIDPTVLFLCQFEAVRKLL 167
>gnl|CDD|162195 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase.
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
diaminopimelate ligase (murein tripeptide ligase) is
described by TIGR01081.
Length = 448
Score = 25.0 bits (55), Expect = 7.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 54 FIGIAGTGMGMIVGIL 69
F+GI G GM I IL
Sbjct: 4 FVGIGGIGMSGIAEIL 19
>gnl|CDD|132297 TIGR03253, oxalate_frc, formyl-CoA transferase. This enzyme,
formyl-CoA transferase, transfers coenzyme A from
formyl-CoA to oxalate. It forms a pathway, together with
oxalyl-CoA decarboxylase, for oxalate degradation;
decarboxylation by the latter gene regenerates
formyl-CoA. The two enzymes typically are encoded by a
two-gene operon.
Length = 415
Score = 24.8 bits (54), Expect = 8.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 52 GAFIGIAGTGMGMIVGIL 69
GA +G + TGM +++GIL
Sbjct: 163 GAALGDSNTGMHLMIGIL 180
>gnl|CDD|130580 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1), which are modelled
by the corresponding TIGR01116 and TIGR01522. This model
is well separated from the two others.
Length = 941
Score = 24.7 bits (54), Expect = 9.3
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 19 SLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGILIS 71
S + +V D ++ A + S++ G TG V IL+S
Sbjct: 85 SFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVS 137
>gnl|CDD|183250 PRK11638, PRK11638, lipopolysaccharide biosynthesis protein WzzE;
Provisional.
Length = 342
Score = 24.6 bits (54), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 111 WIISMALALSLLATIF-----PSWKASRI 134
WII MAL +L+A + W A+ I
Sbjct: 25 WIIGMALLFALIALGYSFLARQEWSATAI 53
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.332 0.143 0.411
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,378,781
Number of extensions: 152934
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 137
Length of query: 143
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,179,401
Effective search space: 246584659
Effective search space used: 246584659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (23.8 bits)