RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.789_1
         (143 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.5 bits (71), Expect = 0.080
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 59/143 (41%)

Query: 8   IVLVAALNIISS---LVMLVQERRRDI---AILRTMGARISSIMSIFFMIGAFIGIAGTG 61
             LV    +I +     ++ +         A+ R +G   + +++IF   G        G
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---G--------G 162

Query: 62  MGMIVGILISCNVEAIRKFF--LHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALAL 119
            G         N +    +F  L  L    + T   L+ +L           I   A  L
Sbjct: 163 QG---------NTD---DYFEELRDL----YQTYHVLVGDL-----------IKFSAETL 195

Query: 120 SLLAT-------IFP------SW 129
           S L         +F        W
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEW 218



 Score = 26.1 bits (57), Expect = 3.0
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 14/65 (21%)

Query: 50  MIGAFIGIAGTGMGMIVGILIS----------CNVEAIRKFFLHTLGVVIFDTEAYLLTE 99
           +     G  G   G++  + I+             +AI   F   +GV     EAY  T 
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRC--YEAYPNTS 318

Query: 100 LPSKI 104
           LP  I
Sbjct: 319 LPPSI 323


>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase,
          ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
          Length = 491

 Score = 28.3 bits (62), Expect = 0.74
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 29 RDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGIL 69
          + +A LR++   +  +  I F     +GI G GMG I  +L
Sbjct: 4  QQLAKLRSIVPEMRRVRHIHF-----VGIGGAGMGGIAEVL 39


>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
          TM0231, JCSG, PSI, protein structure initiative; 2.30A
          {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
          Length = 469

 Score = 26.4 bits (57), Expect = 2.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 54 FIGIAGTGMGMIVGILIS 71
          F+GI G GM  +     S
Sbjct: 17 FVGIGGIGMSAVALHEFS 34


>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural
          genomics, joint center for structural genomics, JCSG;
          HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
          Length = 524

 Score = 26.0 bits (56), Expect = 3.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 54 FIGIAGTGMGMIVGIL 69
           +GI GT MG +  + 
Sbjct: 24 ILGICGTFMGSLALLA 39


>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
          MESO-diaminopimelate ligase; structural genomics,
          PSI-2, protein structure initiative; 2.55A {Neisseria
          meningitidis MC58}
          Length = 326

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 54 FIGIAGTGMGMIVGILIS 71
           IGI GT MG +  I   
Sbjct: 9  IIGIGGTFMGGLAAIAKE 26


>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET:
          UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
          c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
          Length = 475

 Score = 25.5 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 34 LRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGIL 69
          +R +   +  +  I F     IGI G GM  I  IL
Sbjct: 8  IRKIIPEMRRVQQIHF-----IGIGGAGMSGIAEIL 38


>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A
           catalytic subunit; SAM dependent methyltransferase; HET:
           SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37
           PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
          Length = 334

 Score = 24.6 bits (53), Expect = 9.1
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 75  EAIRKFFL-HTLGVVI-----FDTEAYLLTELPSKISWVEV 109
            AI +F + +    V+      D     L ++   +++V++
Sbjct: 87  AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDI 127


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.332    0.143    0.411 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,188,023
Number of extensions: 51590
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 32
Length of query: 143
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 60
Effective length of database: 3,680,978
Effective search space: 220858680
Effective search space used: 220858680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.5 bits)