RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.789_1
         (143 letters)



>d3seba1 b.40.2.2 (A:1-121) Staphylococcal enterotoxin B, SEB
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 121

 Score = 27.6 bits (61), Expect = 0.48
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 73  NVEAIRKFFLHTLGVVIFDTEA----YLLTELPSK 103
           NV++I +F    L   I DT+      +  E  +K
Sbjct: 37  NVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNK 71


>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase
          MurC {Haemophilus influenzae [TaxId: 727]}
          Length = 96

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 54 FIGIAGTGMGMIVGILISCNVE 75
          FIGI G GM  I  IL++   +
Sbjct: 13 FIGIGGAGMSGIAEILLNEGYQ 34


>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 328

 Score = 23.9 bits (51), Expect = 5.8
 Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 75  EAIRKFFLHTLGVVI------FDTEAYLLTELPSKISWVEV 109
            AI +F +    V +       D     L ++   +++V++
Sbjct: 86  AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDI 126


>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC
          {Thermotoga maritima [TaxId: 2336]}
          Length = 89

 Score = 23.7 bits (51), Expect = 6.2
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 54 FIGIAGTGMGMIVGIL 69
          F+GI G GM  +    
Sbjct: 6  FVGIGGIGMSAVALHE 21


>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 23.7 bits (51), Expect = 7.1
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 41  ISSIMSIFFMIGAFIGIAGTGMGMIVGILIS 71
             +++S   + G  +   G    M +  L S
Sbjct: 248 FGAVLSFLPISGLAVTALGVIGIMTISYLSS 278


>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
          cardiophyllum) [TaxId: 160510]}
          Length = 360

 Score = 23.0 bits (48), Expect = 9.5
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 17 ISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGTGMGMIVGILISCNVEA 76
          I    +L     +   +     AR++           F  I GT  G ++  +IS   E 
Sbjct: 18 IIPATILEFLEGQLQEMDNNADARLADY---------FDVIGGTSTGGLLTAMISTPNEN 68

Query: 77 IRKFFL 82
           R F  
Sbjct: 69 NRPFAA 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.143    0.411 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,839
Number of extensions: 21983
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 20
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (22.6 bits)