BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.789_1
         (143 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.789_1 
          Length = 143

 Score =  277 bits (708), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60
           MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT
Sbjct: 1   MFVILALIVLVAALNIISSLVMLVQERRRDIAILRTMGARISSIMSIFFMIGAFIGIAGT 60

Query: 61  GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120
           GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS
Sbjct: 61  GMGMIVGILISCNVEAIRKFFLHTLGVVIFDTEAYLLTELPSKISWVEVSWIISMALALS 120

Query: 121 LLATIFPSWKASRIDPVKVLRGE 143
           LLATIFPSWKASRIDPVKVLRGE
Sbjct: 121 LLATIFPSWKASRIDPVKVLRGE 143


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 24.3 bits (51), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 28  RRDIAILRTMGARISSIMSI 47
           R DI +L TMGARI  I  I
Sbjct: 174 RSDIMLLNTMGARIRVIAPI 193


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 23.1 bits (48), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 16  IISSLVMLVQERRRDIAILR 35
           +I+++V L Q RR+D+ +LR
Sbjct: 508 VITTVVDLPQFRRKDLKLLR 527


>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 20.8 bits (42), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 78  RKFFL-HTLGVVIFDTEAYLLTELPSK 103
            K+F+ HT  +++FDT   ++  +P K
Sbjct: 154 EKYFVDHTTALLLFDTAGSIVGVIPYK 180


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.332    0.143    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,124
Number of Sequences: 1233
Number of extensions: 2826
Number of successful extensions: 10
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 328,796
effective HSP length: 66
effective length of query: 77
effective length of database: 247,418
effective search space: 19051186
effective search space used: 19051186
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 34 (17.7 bits)