Query 537021.9.peg.80_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 14:50:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_80.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2rbd_A BH2358 protein; putativ 9.5 73 0.0031 14.7 0.7 16 8-23 118-133 (171) 2 2g7j_A Putative cytoplasmic pr 6.8 1.3E+02 0.0055 13.4 1.0 21 12-37 94-114 (124) 3 1qtn_B Caspase-8; complex (pro 5.7 1.1E+02 0.0047 13.8 0.2 22 14-35 26-47 (95) 4 1sc3_B Interleukin-1 beta conv 5.6 1.2E+02 0.005 13.7 0.3 22 14-35 22-43 (88) 5 3lti_A DNA-directed RNA polyme 5.6 1.5E+02 0.0065 13.1 0.8 16 6-21 60-75 (296) 6 1pyo_B Caspase-2; apoptosis, c 5.4 1.3E+02 0.0053 13.5 0.3 21 15-35 29-49 (105) 7 2odm_A YLAN, UPF0358 protein M 4.7 2.2E+02 0.0092 12.3 1.5 20 2-21 46-65 (91) 8 2dko_B Caspase-3; low barrier 4.7 1.5E+02 0.0064 13.1 0.4 22 14-35 30-51 (103) 9 2oc5_A Hypothetical protein; N 4.6 1.9E+02 0.008 12.6 0.8 14 9-22 224-237 (244) 10 2knj_A Microplusin preprotein; 4.5 2.3E+02 0.0097 12.2 1.1 7 23-29 45-51 (90) No 1 >2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125} Probab=9.45 E-value=73 Score=14.72 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8888612765421354 Q 537021.9.peg.8 8 LLKAIGFSVRNDMRNT 23 (37) Q Consensus 8 llkaigfsvrndmrnt 23 (37) ...|+..|+|||.|.. T Consensus 118 ~~~al~~s~R~Dir~~ 133 (171) T 2rbd_A 118 CSQIIGQSIREDVALM 133 (171) T ss_dssp HHHHHHHCCSHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999877999999 No 2 >2g7j_A Putative cytoplasmic protein; STR72, structure, autostructure, structural genomics, PSI, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.198.5.1 Probab=6.77 E-value=1.3e+02 Score=13.43 Aligned_cols=21 Identities=52% Similarity=0.738 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 61276542135489999999850279 Q 537021.9.peg.8 12 IGFSVRNDMRNTCFIRYLLSLFRDKK 37 (37) Q Consensus 12 igfsvrndmrntcfiryllslfrdkk 37 (37) -|||-|.- .-|||-++|-+.+ T Consensus 94 HGFsSR~~-----L~ryl~~mFg~~~ 114 (124) T 2g7j_A 94 HGFSSRIA-----LERYLNGLFGDEK 114 (124) T ss_dssp ECCSCHHH-----HHHHHHHHHTC-- T ss_pred CCCCHHHH-----HHHHHHHHHCCCC T ss_conf 67346999-----9999999846655 No 3 >1qtn_B Caspase-8; complex (protease/inhibitor), apoptosis, dithiane-DIOL, caspase, cysteine-protease, tetramer; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 1f9e_B* 1qdu_B* Probab=5.74 E-value=1.1e+02 Score=13.79 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2765421354899999998502 Q 537021.9.peg.8 14 FSVRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 14 fsvrndmrntcfiryllslfrd 35 (37) .|.||.-.+..||..|...|+. T Consensus 26 ~S~R~~~~GSwfIq~Lc~~~~~ 47 (95) T 1qtn_B 26 VSYRNPAEGTWYIQSLCQSLRE 47 (95) T ss_dssp CCEEETTTEEHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 8885599898999999999998 No 4 >1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* 2h51_B* ... Probab=5.62 E-value=1.2e+02 Score=13.66 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2765421354899999998502 Q 537021.9.peg.8 14 FSVRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 14 fsvrndmrntcfiryllslfrd 35 (37) .|.||.-+..-||..|...|+. T Consensus 22 ~s~R~~~~GSwfIq~lc~~~~~ 43 (88) T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQE 43 (88) T ss_dssp CCCEETTTEEHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 8886799998999999999999 No 5 >3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A Probab=5.57 E-value=1.5e+02 Score=13.08 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5688886127654213 Q 537021.9.peg.8 6 FTLLKAIGFSVRNDMR 21 (37) Q Consensus 6 ftllkaigfsvrndmr 21 (37) .++|+|+|++...++. T Consensus 60 t~lLrAlG~~~~~il~ 75 (296) T 3lti_A 60 TIILRALNYTTEQILD 75 (296) T ss_dssp HHHHHHTTCCHHHHHH T ss_pred HHHHHHHCCCHHHHHH T ss_conf 9999871032566778 No 6 >1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B Probab=5.36 E-value=1.3e+02 Score=13.53 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHC Q ss_conf 765421354899999998502 Q 537021.9.peg.8 15 SVRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 15 svrndmrntcfiryllslfrd 35 (37) |.||.-++.+||+.|...|++ T Consensus 29 s~R~~~~GSwfIq~Lc~~~~~ 49 (105) T 1pyo_B 29 AMRNTKRGSWYIEALAQVFSE 49 (105) T ss_dssp CEEETTTEEHHHHHHHHHHHH T ss_pred CEECCCCCCHHHHHHHHHHHH T ss_conf 400699898899999999998 No 7 >2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp} Probab=4.74 E-value=2.2e+02 Score=12.31 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=14.7 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 54675688886127654213 Q 537021.9.peg.8 2 DVRKFTLLKAIGFSVRNDMR 21 (37) Q Consensus 2 dvrkftllkaigfsvrndmr 21 (37) |..-|.|-+-|.|.||-..- T Consensus 46 DTQmfGlSrEVdFAVrlgli 65 (91) T 2odm_A 46 DTQMFGLQKEVDFAVKLGLV 65 (91) T ss_dssp HHHHHHHHHHHHHHHHTTSS T ss_pred HHHHHHHHHHHHHHHHHCCC T ss_conf 98873216887899995774 No 8 >2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation damage, tetrahedral intermediate, protease, hydrolase; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B 1rhm_B* 1rhq_B 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ... Probab=4.72 E-value=1.5e+02 Score=13.10 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2765421354899999998502 Q 537021.9.peg.8 14 FSVRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 14 fsvrndmrntcfiryllslfrd 35 (37) .|.||.-.+.+||..|...|+. T Consensus 30 ~S~R~~~~GSwfIq~L~~~l~~ 51 (103) T 2dko_B 30 YSWRNSKDGSWFIQSLCAMLKQ 51 (103) T ss_dssp CCEEETTTEEHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 7664799998899999999998 No 9 >2oc5_A Hypothetical protein; NP_895059.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 1.68A {Prochlorococcus marinus str} SCOP: a.25.1.6 Probab=4.61 E-value=1.9e+02 Score=12.60 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88861276542135 Q 537021.9.peg.8 9 LKAIGFSVRNDMRN 22 (37) Q Consensus 9 lkaigfsvrndmrn 22 (37) |..|||+.|.-||- T Consensus 224 L~~IGf~~rei~rm 237 (244) T 2oc5_A 224 LTEIGFNTREITRM 237 (244) T ss_dssp HHHHTCCHHHHHHH T ss_pred HHHCCCCHHHHHHH T ss_conf 99759758999999 No 10 >2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus} Probab=4.45 E-value=2.3e+02 Score=12.20 Aligned_cols=7 Identities=29% Similarity=0.690 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 4899999 Q 537021.9.peg.8 23 TCFIRYL 29 (37) Q Consensus 23 tcfiryl 29 (37) +|+||+| T Consensus 45 lC~vrkL 51 (90) T 2knj_A 45 ACAYRKM 51 (90) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 0099999 Done!