Query 537021.9.peg.80_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Mon May 23 12:54:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_80.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2ayxa2 c.23.1.6 (A:700-816) S 10.9 46 0.0034 14.5 1.3 17 19-35 13-29 (117) 2 d2gboa1 a.23.6.1 (A:1-82) Hypo 6.3 99 0.0072 12.9 1.5 19 2-20 45-63 (82) 3 d1ppjd2 f.23.11.1 (D:196-241) 5.4 93 0.0068 13.0 0.9 16 1-16 3-18 (46) 4 d1nw9b_ c.17.1.1 (B:) Caspase- 5.0 1E+02 0.0076 12.7 0.9 20 16-35 215-234 (277) 5 d2oc5a1 a.25.1.6 (A:20-241) Hy 5.0 1E+02 0.0074 12.8 0.8 14 9-22 204-217 (222) 6 d1bd3a_ c.61.1.1 (A:) Uracil P 4.0 1.5E+02 0.011 12.0 1.5 18 20-37 19-36 (224) 7 d2g7ja1 d.198.5.1 (A:1-112) Pu 3.7 1.5E+02 0.011 11.9 1.0 19 12-35 94-112 (112) 8 d1q08a_ a.6.1.3 (A:) Transcrip 3.5 1.6E+02 0.012 11.7 1.8 20 8-34 11-30 (94) 9 d1g3nc2 a.74.1.1 (C:148-253) V 3.1 1.7E+02 0.012 11.7 0.6 20 2-21 6-25 (106) 10 d3cx5d2 f.23.11.1 (D:261-307) 2.8 2E+02 0.014 11.3 0.7 15 1-15 3-17 (47) No 1 >d2ayxa2 c.23.1.6 (A:700-816) Sensor kinase protein RcsC {Escherichia coli [TaxId: 562]} Probab=10.90 E-value=46 Score=14.53 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 21354899999998502 Q 537021.9.peg.8 19 DMRNTCFIRYLLSLFRD 35 (37) Q Consensus 19 dmrntcfiryllslfrd 35 (37) +.||.+.-.||.+|.+. T Consensus 13 ~iRNa~Le~fL~~lL~~ 29 (117) T d2ayxa2 13 AVRNASLCQFLETSLQR 29 (117) T ss_dssp ECCCHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 22688999999999986 No 2 >d2gboa1 a.23.6.1 (A:1-82) Hypothetical protein EF2458 {Enterococcus faecalis [TaxId: 1351]} Probab=6.35 E-value=99 Score=12.86 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=12.9 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 5467568888612765421 Q 537021.9.peg.8 2 DVRKFTLLKAIGFSVRNDM 20 (37) Q Consensus 2 dvrkftllkaigfsvrndm 20 (37) |.+-|.+-+.|.|.||-.. T Consensus 45 DTQMfGlsrEidFAvrlgl 63 (82) T d2gboa1 45 DTQMYGFSRQVTYATRLGI 63 (82) T ss_dssp HHHHHHHHHHHHHHHHHTS T ss_pred HHHHHCCHHHHHHHHHHCC T ss_conf 8887231245347787366 No 3 >d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Probab=5.44 E-value=93 Score=12.98 Aligned_cols=16 Identities=31% Similarity=0.063 Sum_probs=12.1 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 9546756888861276 Q 537021.9.peg.8 1 MDVRKFTLLKAIGFSV 16 (37) Q Consensus 1 mdvrkftllkaigfsv 16 (37) ||.||-.-+|++.|.. T Consensus 3 ~d~RK~mG~Kv~~~l~ 18 (46) T d1ppjd2 3 HDHRKRMGLKMLLMMG 18 (46) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 5789997999999999 No 4 >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.99 E-value=1e+02 Score=12.72 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 65421354899999998502 Q 537021.9.peg.8 16 VRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 16 vrndmrntcfiryllslfrd 35 (37) .|++-.+.+|+++|+..++. T Consensus 215 ~~~~~~gS~f~~~L~~~l~~ 234 (277) T d1nw9b_ 215 WRDPKSGSWYVETLDDIFEQ 234 (277) T ss_dssp TTCTTSCBHHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHHH T ss_conf 44898898999999999998 No 5 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Probab=4.96 E-value=1e+02 Score=12.81 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88861276542135 Q 537021.9.peg.8 9 LKAIGFSVRNDMRN 22 (37) Q Consensus 9 lkaigfsvrndmrn 22 (37) |..|||+.|.-||- T Consensus 204 L~~IGf~~rei~rm 217 (222) T d2oc5a1 204 LTEIGFNTREITRM 217 (222) T ss_dssp HHHHTCCHHHHHHH T ss_pred HHHCCCCHHHHHHH T ss_conf 99759758999998 No 6 >d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Probab=3.98 E-value=1.5e+02 Score=11.99 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 135489999999850279 Q 537021.9.peg.8 20 MRNTCFIRYLLSLFRDKK 37 (37) Q Consensus 20 mrntcfiryllslfrdkk 37 (37) +.++.+|+.+|+..||+. T Consensus 19 l~~~p~i~~~lTiLRd~~ 36 (224) T d1bd3a_ 19 MKQTAQLRAMMTIIRDKE 36 (224) T ss_dssp CCCCHHHHHHHHHHHCTT T ss_pred ECCCHHHHHHHHHHHCCC T ss_conf 479879999999867889 No 7 >d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]} Probab=3.71 E-value=1.5e+02 Score=11.86 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 612765421354899999998502 Q 537021.9.peg.8 12 IGFSVRNDMRNTCFIRYLLSLFRD 35 (37) Q Consensus 12 igfsvrndmrntcfiryllslfrd 35 (37) -|||-|.- .-|||-++|-| T Consensus 94 hGFsSR~~-----L~ryl~~mFg~ 112 (112) T d2g7ja1 94 HGFSSRIA-----LERYLNGLFGD 112 (112) T ss_dssp ECCSCHHH-----HHHHHHHHHTC T ss_pred CCCCHHHH-----HHHHHHHHHCC T ss_conf 56236999-----99999987069 No 8 >d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]} Probab=3.48 E-value=1.6e+02 Score=11.75 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888861276542135489999999850 Q 537021.9.peg.8 8 LLKAIGFSVRNDMRNTCFIRYLLSLFR 34 (37) Q Consensus 8 llkaigfsvrndmrntcfiryllslfr 34 (37) -.++.|||... |+-||.++. T Consensus 11 ~ar~lGFsL~E-------I~~ll~l~~ 30 (94) T d1q08a_ 11 HARQLGFSLES-------IRELLSIRI 30 (94) T ss_dssp HHHHTTCCHHH-------HHHHHHHHH T ss_pred HHHHCCCCHHH-------HHHHHHHCC T ss_conf 99997998999-------999998533 No 9 >d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Probab=3.08 E-value=1.7e+02 Score=11.69 Aligned_cols=20 Identities=45% Similarity=0.521 Sum_probs=15.7 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 54675688886127654213 Q 537021.9.peg.8 2 DVRKFTLLKAIGFSVRNDMR 21 (37) Q Consensus 2 dvrkftllkaigfsvrndmr 21 (37) ||..|-|||-.|-|-.-|.- T Consensus 6 dvtsflllklvggsqhldfw 25 (106) T d1g3nc2 6 DVTSFLLLKLVGGSQHLDFW 25 (106) T ss_dssp HHHHHHHHHHSCSSTTHHHH T ss_pred HHHHHHHHHHHCCCCHHHHH T ss_conf 55899999996785102288 No 10 >d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.78 E-value=2e+02 Score=11.35 Aligned_cols=15 Identities=33% Similarity=0.131 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 954675688886127 Q 537021.9.peg.8 1 MDVRKFTLLKAIGFS 15 (37) Q Consensus 1 mdvrkftllkaigfs 15 (37) ||-||--.+|++... T Consensus 3 hDeRK~mg~K~~~i~ 17 (47) T d3cx5d2 3 HDERKRLGLKTVIIL 17 (47) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 268899898999999 Done!