RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.80_1
         (37 letters)



>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit.
          Length = 1070

 Score = 26.0 bits (58), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 8   LLKAIGFSVRNDMRNTCFIRYLLSLFRDKK 37
           LL A+G ++R  + N C+    LS   DK+
Sbjct: 183 LLSAMGLNLREILDNVCYPEIFLSFLNDKE 212


>gnl|CDD|144478 pfam00897, Orbi_VP7, Orbivirus inner capsid protein VP7.  In BTV,
           260 trimers of VP7 are found in the core. The major
           proteins of the core are VP7 and VP3. VP7 forms an outer
           layer around VP3.
          Length = 350

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 9   LKAIGFSVRNDMRNTCFIRYLLSLFRD 35
           + A+ F  RND+    F+   LS FR 
Sbjct: 171 ITALLFPNRNDVIMIYFVWRRLSNFRG 197


>gnl|CDD|34714 COG5111, RPC34, DNA-directed RNA polymerase III, subunit C34
          [Transcription].
          Length = 301

 Score = 24.3 bits (52), Expect = 8.9
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 8  LLKAIGFSVRNDMR---NTCFIRYLLSLFRDK 36
          L   +G +   D+    N    R L+SLFR K
Sbjct: 33 LQMQMGKASLTDLASELNALLKRQLISLFRQK 64


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.337    0.147    0.433 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 419,977
Number of extensions: 10515
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 37
Length of database: 6,263,737
Length adjustment: 11
Effective length of query: 26
Effective length of database: 6,026,038
Effective search space: 156676988
Effective search space used: 156676988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.5 bits)