RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.80_1 (37 letters) >gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit. Length = 1070 Score = 26.0 bits (58), Expect = 2.1 Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 8 LLKAIGFSVRNDMRNTCFIRYLLSLFRDKK 37 LL A+G ++R + N C+ LS DK+ Sbjct: 183 LLSAMGLNLREILDNVCYPEIFLSFLNDKE 212 >gnl|CDD|144478 pfam00897, Orbi_VP7, Orbivirus inner capsid protein VP7. In BTV, 260 trimers of VP7 are found in the core. The major proteins of the core are VP7 and VP3. VP7 forms an outer layer around VP3. Length = 350 Score = 24.7 bits (54), Expect = 5.2 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 9 LKAIGFSVRNDMRNTCFIRYLLSLFRD 35 + A+ F RND+ F+ LS FR Sbjct: 171 ITALLFPNRNDVIMIYFVWRRLSNFRG 197 >gnl|CDD|34714 COG5111, RPC34, DNA-directed RNA polymerase III, subunit C34 [Transcription]. Length = 301 Score = 24.3 bits (52), Expect = 8.9 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 8 LLKAIGFSVRNDMR---NTCFIRYLLSLFRDK 36 L +G + D+ N R L+SLFR K Sbjct: 33 LQMQMGKASLTDLASELNALLKRQLISLFRQK 64 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.337 0.147 0.433 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 419,977 Number of extensions: 10515 Number of successful extensions: 53 Number of sequences better than 10.0: 1 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 4 Length of query: 37 Length of database: 6,263,737 Length adjustment: 11 Effective length of query: 26 Effective length of database: 6,026,038 Effective search space: 156676988 Effective search space used: 156676988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 51 (23.5 bits)