Query 537021.9.peg.804_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 23:32:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_804.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2v6e_A Protelemorase; hairpin 6.7 1.3E+02 0.0039 14.0 0.2 18 8-25 6-23 (121) 2 >1w96_A ACC, acetyl-coenzyme A 5.9 2.5E+02 0.0073 12.6 1.3 24 15-38 16-39 (66) 3 >1ehi_A LMDDL2, D-alanine:D-la 5.8 2.5E+02 0.0075 12.5 1.3 27 12-38 20-46 (71) 4 >2pvp_A D-alanine-D-alanine li 4.9 2.9E+02 0.0086 12.2 1.4 27 12-38 17-43 (67) 5 >1kzy_C Tumor suppressor P53-b 4.6 3.1E+02 0.009 12.1 1.7 17 4-20 19-35 (80) 6 >2e7j_A SEP-tRNA:Cys-tRNA synt 4.6 1.5E+02 0.0045 13.6 -0.5 15 7-21 47-61 (66) 7 >3hun_A Penicillin-binding pro 4.1 2.2E+02 0.0066 12.8 0.0 23 1-23 22-47 (221) 8 >2i3o_A Gamma-glutamyltransfer 3.9 3.5E+02 0.01 11.8 1.5 16 2-17 29-44 (61) 9 >1odo_A Putative cytochrome P4 3.5 3.8E+02 0.011 11.6 0.8 13 6-18 70-82 (83) 10 >1r4p_B Sltii B subunit, shiga 3.4 3.5E+02 0.01 11.8 0.5 6 24-29 52-57 (70) No 1 >>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:101-221) Probab=6.74 E-value=1.3e+02 Score=13.96 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=13.7 Q ss_pred HHHHHHHHHCCCCCEEEC Q ss_conf 999999981884003423 Q 537021.9.peg.8 8 GLSIILMIAGYPAFAYKT 25 (39) Q Consensus 8 glsiilmiagypafaykt 25 (39) .-||+-|-.-||+|+|-- T Consensus 6 ~~sI~~lsnKYPl~se~l 23 (121) T 2v6e_A 6 EKNVIKLSEKYPLYSEEL 23 (121) T ss_dssp HHHHHHHHHHCSTTHHHH T ss_pred HHHHHHHHHCCCHHHHHH T ss_conf 889999985071489998 No 2 >>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:217-282) Probab=5.93 E-value=2.5e+02 Score=12.56 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=19.7 Q ss_pred HHCCCCCEEECCCCCCCCCCCCCC Q ss_conf 818840034236323322464346 Q 537021.9.peg.8 15 IAGYPAFAYKTNTCHGYGTHGCKN 38 (39) Q Consensus 15 iagypafayktntchgygthgckn 38 (39) --|||...--++...|.|..-|++ T Consensus 16 ~ig~PvVvKP~~~~gs~gv~~v~~ 39 (66) T 1w96_A 16 RIGFPVMIKASEGGGGKGIRQVER 39 (66) T ss_dssp HHCSSEEEEETTCCTTTTEEEECS T ss_pred HCCCCEEEEECCCCCCCEEEEECC T ss_conf 569878986235567852589737 No 3 >>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} (A:150-220) Probab=5.80 E-value=2.5e+02 Score=12.52 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.2 Q ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCC Q ss_conf 999818840034236323322464346 Q 537021.9.peg.8 12 ILMIAGYPAFAYKTNTCHGYGTHGCKN 38 (39) Q Consensus 12 ilmiagypafayktntchgygthgckn 38 (39) +.---|||.+.--.+...|.|..-|+| T Consensus 20 ~~~~lg~PvvvKP~~~~~s~Gv~~v~~ 46 (71) T 1ehi_A 20 IVAELGNIVFVKAANQGSSVGISRVTN 46 (71) T ss_dssp HHHHHCSCEEEEESSCCTTTTEEEECS T ss_pred HHHHHCCCEEEECCCCCCCCCCEEECC T ss_conf 999729924981687898888558668 No 4 >>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} (A:164-230) Probab=4.93 E-value=2.9e+02 Score=12.21 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.5 Q ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCC Q ss_conf 999818840034236323322464346 Q 537021.9.peg.8 12 ILMIAGYPAFAYKTNTCHGYGTHGCKN 38 (39) Q Consensus 12 ilmiagypafayktntchgygthgckn 38 (39) +.-.-|||.+.--.+...|-|..-|+| T Consensus 17 ~~~~~g~PvvvKP~~~~~s~Gv~~v~~ 43 (67) T 2pvp_A 17 DLMNFNFPFIVKPSNAGSSLGVNVVKE 43 (67) T ss_dssp HHCCSCSCEEEEESSCCTTTTCEEESS T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCC T ss_conf 531368976987402266753311332 No 5 >>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} (C:152-231) Probab=4.62 E-value=3.1e+02 Score=12.09 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 67789999999818840 Q 537021.9.peg.8 4 NFFLGLSIILMIAGYPA 20 (39) Q Consensus 4 nfflglsiilmiagypa 20 (39) ||.---+-|||++|--. T Consensus 19 ~f~elW~eiLm~gGa~s 35 (80) T 1kzy_C 19 NFLELWSEILMTGGAAS 35 (80) T ss_dssp TTHHHHHHHHHHTTCSE T ss_pred CHHHHHHHHHHHCCCEE T ss_conf 37999999999879989 No 6 >>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} (A:19-42,A:228-269) Probab=4.60 E-value=1.5e+02 Score=13.62 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=10.3 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 899999998188400 Q 537021.9.peg.8 7 LGLSIILMIAGYPAF 21 (39) Q Consensus 7 lglsiilmiagypaf 21 (39) .|..|+-|+|.+|.. T Consensus 47 ~G~~i~tlmASFP~V 61 (66) T 2e7j_A 47 RGATIITLMASFPHV 61 (66) T ss_dssp CSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 035689999999999 No 7 >>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A* (A:1-94,A:210-336) Probab=4.10 E-value=2.2e+02 Score=12.81 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=14.4 Q ss_pred CHHHHHHHHHHHHH---HHCCCCCEE Q ss_conf 90467789999999---818840034 Q 537021.9.peg.8 1 MFRNFFLGLSIILM---IAGYPAFAY 23 (39) Q Consensus 1 mfrnfflglsiilm---iagypafay 23 (39) ||+.+|....+|++ +--..++|- T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (221) T 3hun_A 22 AMKNLISIIIILCLTLSIMTPYAQAT 47 (221) T ss_dssp -------------------------C T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 19999999999999999731676640 No 8 >>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} (A:128-141,A:186-232) Probab=3.90 E-value=3.5e+02 Score=11.78 Aligned_cols=16 Identities=44% Similarity=0.767 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 0467789999999818 Q 537021.9.peg.8 2 FRNFFLGLSIILMIAG 17 (39) Q Consensus 2 frnfflglsiilmiag 17 (39) ||.|+-|--.-..||| T Consensus 29 frsfydgsladiiiag 44 (61) T 2i3o_A 29 FRSFYDGSLADIIIAG 44 (61) T ss_dssp TTHHHHSHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCC T ss_conf 4665421566543102 No 9 >>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} (A:163-245) Probab=3.52 E-value=3.8e+02 Score=11.64 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 7899999998188 Q 537021.9.peg.8 6 FLGLSIILMIAGY 18 (39) Q Consensus 6 flglsiilmiagy 18 (39) ..+..+.+++||+ T Consensus 70 i~~~~~~ll~AG~ 82 (83) T 1odo_A 70 LRDTLLLMISAGY 82 (83) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCC T ss_conf 9999999986364 No 10 >>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} (B:) Probab=3.42 E-value=3.5e+02 Score=11.79 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=0.0 Q ss_pred ECCCCC Q ss_conf 236323 Q 537021.9.peg.8 24 KTNTCH 29 (39) Q Consensus 24 ktntch 29 (39) |+|||| T Consensus 52 ksntc~ 57 (70) T 1r4p_B 52 KSSTCE 57 (70) T ss_dssp ECSCCC T ss_pred EECCCC T ss_conf 842225 Done!