Query 537021.9.peg.804_1
Match_columns 39
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 00:03:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_804.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8o_A [pyruvate dehydrogenase 7.7 1E+02 0.0044 13.7 0.9 30 5-34 337-366 (419)
2 2esh_A Conserved hypothetical 7.5 1E+02 0.0043 13.8 0.8 24 1-24 8-31 (118)
3 1eys_H Photosynthetic reaction 5.7 1.5E+02 0.0061 13.0 0.8 23 1-23 18-44 (259)
4 3n3u_A Ampylator IBPA, adenosi 5.7 1.8E+02 0.0076 12.5 1.9 19 7-25 242-260 (299)
5 1rzh_H Reaction center protein 5.2 1.6E+02 0.0069 12.7 0.8 23 1-23 19-45 (260)
6 2q8g_A [pyruvate dehydrogenase 4.6 1.8E+02 0.0078 12.4 0.7 29 6-34 327-355 (407)
7 1kpt_A KP4 toxin; killer toxin 4.4 1.3E+02 0.0053 13.3 -0.3 21 18-38 50-80 (105)
8 1c4q_A Protein (shiga-like tox 3.3 2.6E+02 0.011 11.7 0.5 16 15-31 45-60 (69)
9 1tuz_A Diacylglycerol kinase a 3.3 2.9E+02 0.012 11.5 1.7 12 2-13 96-107 (118)
10 2ny1_A Envelope glycoprotein G 3.2 2.5E+02 0.01 11.8 0.4 22 16-39 75-96 (317)
No 1
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=7.65 E-value=1e+02 Score=13.68 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 778999999981884003423632332246
Q 537021.9.peg.8 5 FFLGLSIILMIAGYPAFAYKTNTCHGYGTH 34 (39)
Q Consensus 5 fflglsiilmiagypafayktntchgygth 34 (39)
+=+||+|.-.++.|-.=.-.-....||||.
T Consensus 337 ~GlGL~isk~~ae~~gG~i~v~S~~G~GT~ 366 (419)
T 1y8o_A 337 FGYGLPISRLYARYFQGDLKLYSMEGVGTD 366 (419)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEECCCCEE
T ss_conf 414199999999986998999964796369
No 2
>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61
Probab=7.53 E-value=1e+02 Score=13.76 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 904677899999998188400342
Q 537021.9.peg.8 1 MFRNFFLGLSIILMIAGYPAFAYK 24 (39)
Q Consensus 1 mfrnfflglsiilmiagypafayk 24 (39)
+||..|+-+.|..++..-|...|.
T Consensus 8 ~f~~~~l~~~IL~lL~~~p~~GYe 31 (118)
T 2esh_A 8 GFRGWWLASTILLLVAEKPSHGYE 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHSCBCHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 630518999999998618998999
No 3
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=5.72 E-value=1.5e+02 Score=12.96 Aligned_cols=23 Identities=43% Similarity=0.662 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHH----HHCCCCCEE
Q ss_conf 90467789999999----818840034
Q 537021.9.peg.8 1 MFRNFFLGLSIILM----IAGYPAFAY 23 (39)
Q Consensus 1 mfrnfflglsiilm----iagypafay 23 (39)
+|--||.||-+-|- -.|||--.-
T Consensus 18 ~Fw~FFa~Lv~YL~rE~~REGyPLe~~ 44 (259)
T 1eys_H 18 AFWLFFFGLIIYLRREDKREGYPLDSN 44 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCSCBC-
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999998612566567873567
No 4
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Probab=5.67 E-value=1.8e+02 Score=12.47 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCCCEEEC
Q ss_conf 8999999981884003423
Q 537021.9.peg.8 7 LGLSIILMIAGYPAFAYKT 25 (39)
Q Consensus 7 lglsiilmiagypafaykt 25 (39)
+-..++|+-+|||.|.+..
T Consensus 242 ~~~~~~l~~~g~~~~~~~~ 260 (299)
T 3n3u_A 242 VIVNKILLDAGYPAFTKFS 260 (299)
T ss_dssp HHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHCCCCCEEECC
T ss_conf 9999999977999622122
No 5
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=5.22 E-value=1.6e+02 Score=12.70 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHH----HHCCCCCEE
Q ss_conf 90467789999999----818840034
Q 537021.9.peg.8 1 MFRNFFLGLSIILM----IAGYPAFAY 23 (39)
Q Consensus 1 mfrnfflglsiilm----iagypafay 23 (39)
+|--||.||-+-|- -.|||--.-
T Consensus 19 ~Fw~FFa~Li~YL~rE~~REGyPle~~ 45 (260)
T 1rzh_H 19 SFWIFLAGLIYYLQTENMREGYPLENE 45 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCSCBCT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999998712566577862238
No 6
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=4.57 E-value=1.8e+02 Score=12.43 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf 78999999981884003423632332246
Q 537021.9.peg.8 6 FLGLSIILMIAGYPAFAYKTNTCHGYGTH 34 (39)
Q Consensus 6 flglsiilmiagypafayktntchgygth 34 (39)
=+||+|.-.+|.|-.=.-.-....||||.
T Consensus 327 GlGL~isr~~ae~~gG~I~v~S~~G~GTd 355 (407)
T 2q8g_A 327 GYGLPISRLYAQYFQGDLKLYSLEGYGTD 355 (407)
T ss_dssp TCHHHHHHHHHHHTTCEEEEEEETTTEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCCEE
T ss_conf 15499999999987997999964796259
No 7
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit, alpha/beta family, LEFT-handed crossover, fungal TOXI; 1.75A {Ustilago maydis} SCOP: d.70.1.1
Probab=4.41 E-value=1.3e+02 Score=13.29 Aligned_cols=21 Identities=33% Similarity=0.729 Sum_probs=12.9
Q ss_pred CCCCEEECCCC----------CCCCCCCCCC
Q ss_conf 84003423632----------3322464346
Q 537021.9.peg.8 18 YPAFAYKTNTC----------HGYGTHGCKN 38 (39)
Q Consensus 18 ypafayktntc----------hgygthgckn 38 (39)
+=||.-+|++. .++-.||||-
T Consensus 50 iCAF~Q~t~~~~s~~~v~~~lq~l~~HGCk~ 80 (105)
T 1kpt_A 50 ISAYVQSTNNCISGTEACRHLTNLVNHGCRV 80 (105)
T ss_dssp EEEEEESSSCCEEHHHHHHHHHHHHHHTCSS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6489867998747899999999999708765
No 8
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 1bov_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=3.31 E-value=2.6e+02 Score=11.70 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=10.2
Q ss_pred HHCCCCCEEECCCCCCC
Q ss_conf 81884003423632332
Q 537021.9.peg.8 15 IAGYPAFAYKTNTCHGY 31 (39)
Q Consensus 15 iagypafayktntchgy 31 (39)
+.|. ....|+|+||.-
T Consensus 45 ltgm-tvtiks~tc~sg 60 (69)
T 1c4q_A 45 ITGM-TVTIKTNACHNG 60 (69)
T ss_dssp HHTC-EEEEECSCCSTT
T ss_pred ECCE-EEEEEECCCCCC
T ss_conf 3141-999982233489
No 9
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=3.28 E-value=2.9e+02 Score=11.47 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 046778999999
Q 537021.9.peg.8 2 FRNFFLGLSIIL 13 (39)
Q Consensus 2 frnfflglsiil 13 (39)
|+.|..|||++.
T Consensus 96 f~efv~~LS~l~ 107 (118)
T 1tuz_A 96 LNDVSCYFSLLE 107 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999983
No 10
>2ny1_A Envelope glycoprotein GP120; HIV, GP120, CD4, viral protein/immune system complex; HET: NAG SUC; 1.99A {Human immunodeficiency virus 1} SCOP: d.172.1.1 PDB: 2nxz_A* 2nxy_A* 1g9m_G* 1rzj_G* 2ny7_G* 2ny5_G* 3idx_G* 3idy_G* 2ny2_A* 1gc1_G* 2ny4_A* 2ny3_A* 2ny6_A* 2ny0_A* 1yym_G* 1rzk_G* 1g9n_G* 1yyl_G* 2i5y_G* 2i60_G* ...
Probab=3.24 E-value=2.5e+02 Score=11.79 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=0.0
Q ss_pred HCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 188400342363233224643469
Q 537021.9.peg.8 16 AGYPAFAYKTNTCHGYGTHGCKNV 39 (39)
Q Consensus 16 agypafayktntchgygthgcknv 39 (39)
|||.-+--+...--|.|. |+||
T Consensus 75 aGfailkCndk~fnGtg~--C~NV 96 (317)
T 2ny1_A 75 AGFAILKCNNKTFNGTGP--CTNV 96 (317)
T ss_dssp TTEEEEEECCTTCCSEEE--ESSE
T ss_pred CCEEEEEECCCCCCCCCE--ECCC
T ss_conf 420799866888678731--2162
Done!