Query 537021.9.peg.813_1
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 02:31:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_813.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01231 PH_Lnk LNK-family Plec 78.5 1.3 3.3E-05 23.6 1.9 22 15-36 36-57 (107)
2 TIGR01148 mtrC tetrahydrometha 33.2 13 0.00033 18.9 0.2 14 3-16 184-197 (276)
3 pfam06590 PerB PerB protein. T 29.9 26 0.00067 17.5 1.3 13 18-30 41-53 (129)
4 COG3626 PhnI Uncharacterized e 11.4 1.2E+02 0.0031 14.4 1.3 22 6-27 217-242 (367)
5 pfam08026 Antimicrobial_5 Bee 9.9 97 0.0025 14.8 0.4 13 6-18 19-31 (40)
6 COG4675 MdpB Microcystin-depen 9.4 1.7E+02 0.0043 13.7 1.4 16 10-25 2-18 (170)
7 KOG3254 consensus 8.7 1E+02 0.0025 14.8 0.0 24 10-35 175-198 (211)
8 COG4582 Uncharacterized protei 8.0 32 0.00081 17.1 -2.7 14 20-33 206-219 (244)
9 PRK01030 tetrahydromethanopter 7.8 1.2E+02 0.0031 14.4 0.2 10 7-16 180-189 (266)
10 CHL00136 rpl31 ribosomal prote 7.1 1.7E+02 0.0042 13.7 0.6 6 7-12 39-44 (72)
No 1
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=78.46 E-value=1.3 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.2
Q ss_pred EEEEEEECCCCCCCCEEEEEEE
Q ss_conf 6899983189865530689988
Q 537021.9.peg.8 15 KIRIFSFVPPKASHHKSIFFSF 36 (41)
Q Consensus 15 kirifsfvppkashhksiffsf 36 (41)
..+.++|+|||+|.-|+..|-|
T Consensus 36 ~le~~~f~PPKsskpk~~v~C~ 57 (107)
T cd01231 36 MLEFYLPLPPKSSKPKLQVACS 57 (107)
T ss_pred EEEEEECCCCCCCCCCCCCEEH
T ss_conf 5779962899777866254111
No 2
>TIGR01148 mtrC tetrahydromethanopterin S-methyltransferase, subunit C; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane.
Probab=33.22 E-value=13 Score=18.94 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=9.1
Q ss_pred EEECCCCCCCCEEE
Q ss_conf 75414898631068
Q 537021.9.peg.8 3 ITNISGNHPFNAKI 16 (41)
Q Consensus 3 itnisgnhpfnaki 16 (41)
|..++=-|||||-.
T Consensus 184 ~~gm~ilHPFNACL 197 (276)
T TIGR01148 184 IGGMAILHPFNACL 197 (276)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 98877512312578
No 3
>pfam06590 PerB PerB protein. This family consists of several PerB or BfpV proteins found specifically in Escherichia coli. PerB is thought to play a role in regulating the expression of BfpA.
Probab=29.92 E-value=26 Score=17.51 Aligned_cols=13 Identities=62% Similarity=0.925 Sum_probs=9.8
Q ss_pred EEEECCCCCCCCE
Q ss_conf 9983189865530
Q 537021.9.peg.8 18 IFSFVPPKASHHK 30 (41)
Q Consensus 18 ifsfvppkashhk 30 (41)
|.-|.|||||-|-
T Consensus 41 ivffippkasyhi 53 (129)
T pfam06590 41 IVFFIPPKASYHI 53 (129)
T ss_pred EEEEECCCCCEEE
T ss_conf 9999179771789
No 4
>COG3626 PhnI Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=11.45 E-value=1.2e+02 Score=14.36 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=15.7
Q ss_pred CCCCCCCCEEEEEE----EECCCCCC
Q ss_conf 14898631068999----83189865
Q 537021.9.peg.8 6 ISGNHPFNAKIRIF----SFVPPKAS 27 (41)
Q Consensus 6 isgnhpfnakirif----sfvppkas 27 (41)
...||||-..|||= ..+|+.-.
T Consensus 217 YgrnHPF~gEiR~Gevev~i~peELg 242 (367)
T COG3626 217 YGRNHPFAGEIRIGEVEVEIVPEELG 242 (367)
T ss_pred CCCCCCCCEEEEEEEEEEEECHHHCC
T ss_conf 56689861445640389997514428
No 5
>pfam08026 Antimicrobial_5 Bee antimicrobial peptide. This family consists of antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum.
Probab=9.92 E-value=97 Score=14.83 Aligned_cols=13 Identities=46% Similarity=0.887 Sum_probs=10.0
Q ss_pred CCCCCCCCEEEEE
Q ss_conf 1489863106899
Q 537021.9.peg.8 6 ISGNHPFNAKIRI 18 (41)
Q Consensus 6 isgnhpfnakiri 18 (41)
..|.-|||.||.-
T Consensus 19 fpg~gpfnpkikw 31 (40)
T pfam08026 19 FPGHGPFNPKIKW 31 (40)
T ss_pred CCCCCCCCCCCCC
T ss_conf 7777877866536
No 6
>COG4675 MdpB Microcystin-dependent protein [Function unknown]
Probab=9.38 E-value=1.7e+02 Score=13.68 Aligned_cols=16 Identities=50% Similarity=1.028 Sum_probs=11.9
Q ss_pred CCCCEEEEEEEEC-CCC
Q ss_conf 8631068999831-898
Q 537021.9.peg.8 10 HPFNAKIRIFSFV-PPK 25 (41)
Q Consensus 10 hpfnakirifsfv-ppk 25 (41)
.||-..||||.|- +||
T Consensus 2 d~figeIrlfa~nfaP~ 18 (170)
T COG4675 2 DPFIGEIRLFAFNFAPK 18 (170)
T ss_pred CCCCEEEEEEECCCCCC
T ss_conf 76401689873477985
No 7
>KOG3254 consensus
Probab=8.66 E-value=1e+02 Score=14.78 Aligned_cols=24 Identities=42% Similarity=0.755 Sum_probs=18.7
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 86310689998318986553068998
Q 537021.9.peg.8 10 HPFNAKIRIFSFVPPKASHHKSIFFS 35 (41)
Q Consensus 10 hpfnakirifsfvppkashhksiffs 35 (41)
+-|.||+| ||-||..-.-|.|+.+
T Consensus 175 ~qFAAkvR--sfkpPEPYKGKGIyv~ 198 (211)
T KOG3254 175 TQFAAKVR--SFKPPEPYKGKGIYVD 198 (211)
T ss_pred HHHHHHHH--CCCCCCCCCCCCEEEC
T ss_conf 99999874--3589998478745862
No 8
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=8.04 E-value=32 Score=17.10 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=7.1
Q ss_pred EECCCCCCCCEEEE
Q ss_conf 83189865530689
Q 537021.9.peg.8 20 SFVPPKASHHKSIF 33 (41)
Q Consensus 20 sfvppkashhksif 33 (41)
+-+-|.-|-||+-|
T Consensus 206 ~~~yP~ISghK~r~ 219 (244)
T COG4582 206 SQLYPQISGHKSRF 219 (244)
T ss_pred CCCCCCCCCCCEEE
T ss_conf 56540003763047
No 9
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=7.78 E-value=1.2e+02 Score=14.36 Aligned_cols=10 Identities=50% Similarity=0.680 Sum_probs=6.7
Q ss_pred CCCCCCCEEE
Q ss_conf 4898631068
Q 537021.9.peg.8 7 SGNHPFNAKI 16 (41)
Q Consensus 7 sgnhpfnaki 16 (41)
.=-|||||-.
T Consensus 180 AIlHPFNACL 189 (266)
T PRK01030 180 AILHPFNACL 189 (266)
T ss_pred HHCCCCHHCC
T ss_conf 8628401045
No 10
>CHL00136 rpl31 ribosomal protein L31; Validated
Probab=7.12 E-value=1.7e+02 Score=13.75 Aligned_cols=6 Identities=100% Similarity=1.841 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 489863
Q 537021.9.peg.8 7 SGNHPF 12 (41)
Q Consensus 7 sgnhpf 12 (41)
|++|||
T Consensus 39 S~cHPF 44 (72)
T CHL00136 39 SGNHPF 44 (72)
T ss_pred CCCCCC
T ss_conf 899885
Done!