Query 537021.9.peg.813_1 Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:40:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_813.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xq4_A Protein APAG; all beta 4.9 2.1E+02 0.0088 12.2 2.3 20 9-28 112-131 (139) 2 3l9z_A Urease accessory protei 4.8 1.7E+02 0.007 12.7 0.6 10 1-10 1-10 (170) 3 3l4c_A Dedicator of cytokinesi 4.6 2.2E+02 0.0093 12.1 4.8 30 10-41 90-119 (220) 4 2f1e_A Protein APAG; APAG prot 4.5 2.2E+02 0.0093 12.1 1.9 18 9-26 108-125 (127) 5 2bih_A Nitrate reductase [NADP 4.3 2.3E+02 0.0097 12.0 1.0 12 6-17 49-60 (474) 6 1rbl_M Ribulose 1,5 bisphospha 4.2 50 0.0021 15.2 -2.4 13 13-25 83-95 (109) 7 2im9_A Hypothetical protein; s 4.1 2.4E+02 0.01 11.9 1.9 20 10-29 306-325 (333) 8 1rdt_E LXXLL motif coactivator 3.8 1.2E+02 0.0049 13.4 -0.8 10 21-30 2-11 (26) 9 2pp6_A Gifsy-2 prophage ATP-bi 3.8 2.3E+02 0.0097 12.0 0.7 10 10-19 83-92 (102) 10 1nkw_Y 50S ribosomal protein L 3.7 2.2E+02 0.0093 12.1 0.5 6 7-12 37-42 (73) No 1 >1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Probab=4.86 E-value=2.1e+02 Score=12.25 Aligned_cols=20 Identities=30% Similarity=0.555 Sum_probs=16.2 Q ss_pred CCCCCEEEEEEEECCCCCCC Q ss_conf 98631068999831898655 Q 537021.9.peg.8 9 NHPFNAKIRIFSFVPPKASH 28 (41) Q Consensus 9 nhpfnakirifsfvppkash 28 (41) ..+|++.|--|++..|..-| T Consensus 112 G~~F~v~Ip~F~L~~P~~l~ 131 (139) T 1xq4_A 112 GIPFEVPIAEFLLAMPRTLH 131 (139) T ss_dssp SCEEEEEEEEEEEECTTC-- T ss_pred CCEEEEECCCEECCCCCCCC T ss_conf 99999988786817988202 No 2 >3l9z_A Urease accessory protein UREE; UREE APO form (dimer), structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 2.08A {Helicobacter pylori} PDB: 3la0_A 3nxz_A 3ny0_A Probab=4.77 E-value=1.7e+02 Score=12.71 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=8.3 Q ss_pred CEEEECCCCC Q ss_conf 9775414898 Q 537021.9.peg.8 1 MIITNISGNH 10 (41) Q Consensus 1 miitnisgnh 10 (41) ||++.|.||- T Consensus 1 MIi~~IlGNv 10 (170) T 3l9z_A 1 MIIERLVGNL 10 (170) T ss_dssp CEECSCCCBS T ss_pred CEEEEECCCC T ss_conf 9478830673 No 3 >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} Probab=4.57 E-value=2.2e+02 Score=12.13 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=22.7 Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEEEEECC Q ss_conf 86310689998318986553068998875129 Q 537021.9.peg.8 10 HPFNAKIRIFSFVPPKASHHKSIFFSFVNISC 41 (41) Q Consensus 10 hpfnakirifsfvppkashhksiffsfvnisc 41 (41) -.|+..|+|- +|+.....--++|+|-++|| T Consensus 90 P~w~eeiKi~--LP~~~~~~~HLlFtf~H~s~ 119 (220) T 3l4c_A 90 PRWFETVKVA--IPIEDVNRSHLRFTFRHRSS 119 (220) T ss_dssp CCCCEEEEEE--ECTTSSTTEEEEEEEEECCC T ss_pred CCCCEEEEEE--CCCCCCCCEEEEEEEEEECC T ss_conf 9975548995--48533788289999997425 No 4 >2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Probab=4.52 E-value=2.2e+02 Score=12.12 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=11.0 Q ss_pred CCCCCEEEEEEEECCCCC Q ss_conf 986310689998318986 Q 537021.9.peg.8 9 NHPFNAKIRIFSFVPPKA 26 (41) Q Consensus 9 nhpfnakirifsfvppka 26 (41) ..+|+|.|--|++..|.. T Consensus 108 g~~F~v~Ip~F~L~~P~~ 125 (127) T 2f1e_A 108 GTEFIAPIAAFVLSVPRT 125 (127) T ss_dssp CCEEEEEEEEEEEC---- T ss_pred CCEEEEECCCEECCCCCC T ss_conf 999999887758689874 No 5 >2bih_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Probab=4.31 E-value=2.3e+02 Score=12.03 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=8.8 Q ss_pred CCCCCCCCEEEE Q ss_conf 148986310689 Q 537021.9.peg.8 6 ISGNHPFNAKIR 17 (41) Q Consensus 6 isgnhpfnakir 17 (41) +.|.|||||.-. T Consensus 49 ltg~~P~NaE~P 60 (474) T 2bih_A 49 LTGSHPFNSEPP 60 (474) T ss_dssp SSTTSSCEEECC T ss_pred ECCCCCCCCCCC T ss_conf 658898988979 No 6 >1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} SCOP: d.73.1.1 PDB: 1rsc_M* Probab=4.23 E-value=50 Score=15.17 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=7.7 Q ss_pred CEEEEEEEECCCC Q ss_conf 1068999831898 Q 537021.9.peg.8 13 NAKIRIFSFVPPK 25 (41) Q Consensus 13 nakirifsfvppk 25 (41) |.-||+..|-|-+ T Consensus 83 ~~YVRLiG~D~~~ 95 (109) T 1rbl_M 83 DCYIRVAGFDNIK 95 (109) T ss_dssp TSEEEEEEEETTT T ss_pred CCEEEEEEEECCC T ss_conf 7669899996887 No 7 >2im9_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13 Probab=4.05 E-value=2.4e+02 Score=11.93 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.6 Q ss_pred CCCCEEEEEEEECCCCCCCC Q ss_conf 86310689998318986553 Q 537021.9.peg.8 10 HPFNAKIRIFSFVPPKASHH 29 (41) Q Consensus 10 hpfnakirifsfvppkashh 29 (41) +|=-.-+|+++|+|.|++.. T Consensus 306 ~~GI~~~~v~~~~p~~~~~~ 325 (333) T 2im9_A 306 SPTIKGINIQVVLPEKPVSN 325 (333) T ss_dssp CSSCCEEEEEEECCSSCC-- T ss_pred CCCEEEEEEEEECCCCCCCC T ss_conf 99779999898515886667 No 8 >1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens} Probab=3.81 E-value=1.2e+02 Score=13.42 Aligned_cols=10 Identities=60% Similarity=0.876 Sum_probs=0.0 Q ss_pred ECCCCCCCCE Q ss_conf 3189865530 Q 537021.9.peg.8 21 FVPPKASHHK 30 (41) Q Consensus 21 fvppkashhk 30 (41) .||..||.|| T Consensus 2 lvpdaaskhk 11 (26) T 1rdt_E 2 LVPDAASKHK 11 (26) T ss_pred CCCHHHHHHH T ss_conf 7730778889 No 9 >2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2 Probab=3.81 E-value=2.3e+02 Score=12.03 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=0.0 Q ss_pred CCCCEEEEEE Q ss_conf 8631068999 Q 537021.9.peg.8 10 HPFNAKIRIF 19 (41) Q Consensus 10 hpfnakirif 19 (41) |-||.|++|| T Consensus 83 ~~~NGK~~i~ 92 (102) T 2pp6_A 83 RRFNGKPQLT 92 (102) T ss_dssp EEETTEEEEE T ss_pred EEECCCEEEE T ss_conf 8558968999 No 10 >1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4 Probab=3.71 E-value=2.2e+02 Score=12.12 Aligned_cols=6 Identities=83% Similarity=1.508 Sum_probs=0.0 Q ss_pred CCCCCC Q ss_conf 489863 Q 537021.9.peg.8 7 SGNHPF 12 (41) Q Consensus 7 sgnhpf 12 (41) |.+||| T Consensus 37 s~~HPf 42 (73) T 1nkw_Y 37 SGVHPF 42 (73) T ss_pred CCCCCC T ss_conf 888771 Done!