Query 537021.9.peg.813_1
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 23:40:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_813.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xq4_A Protein APAG; all beta 4.9 2.1E+02 0.0088 12.2 2.3 20 9-28 112-131 (139)
2 3l9z_A Urease accessory protei 4.8 1.7E+02 0.007 12.7 0.6 10 1-10 1-10 (170)
3 3l4c_A Dedicator of cytokinesi 4.6 2.2E+02 0.0093 12.1 4.8 30 10-41 90-119 (220)
4 2f1e_A Protein APAG; APAG prot 4.5 2.2E+02 0.0093 12.1 1.9 18 9-26 108-125 (127)
5 2bih_A Nitrate reductase [NADP 4.3 2.3E+02 0.0097 12.0 1.0 12 6-17 49-60 (474)
6 1rbl_M Ribulose 1,5 bisphospha 4.2 50 0.0021 15.2 -2.4 13 13-25 83-95 (109)
7 2im9_A Hypothetical protein; s 4.1 2.4E+02 0.01 11.9 1.9 20 10-29 306-325 (333)
8 1rdt_E LXXLL motif coactivator 3.8 1.2E+02 0.0049 13.4 -0.8 10 21-30 2-11 (26)
9 2pp6_A Gifsy-2 prophage ATP-bi 3.8 2.3E+02 0.0097 12.0 0.7 10 10-19 83-92 (102)
10 1nkw_Y 50S ribosomal protein L 3.7 2.2E+02 0.0093 12.1 0.5 6 7-12 37-42 (73)
No 1
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=4.86 E-value=2.1e+02 Score=12.25 Aligned_cols=20 Identities=30% Similarity=0.555 Sum_probs=16.2
Q ss_pred CCCCCEEEEEEEECCCCCCC
Q ss_conf 98631068999831898655
Q 537021.9.peg.8 9 NHPFNAKIRIFSFVPPKASH 28 (41)
Q Consensus 9 nhpfnakirifsfvppkash 28 (41)
..+|++.|--|++..|..-|
T Consensus 112 G~~F~v~Ip~F~L~~P~~l~ 131 (139)
T 1xq4_A 112 GIPFEVPIAEFLLAMPRTLH 131 (139)
T ss_dssp SCEEEEEEEEEEEECTTC--
T ss_pred CCEEEEECCCEECCCCCCCC
T ss_conf 99999988786817988202
No 2
>3l9z_A Urease accessory protein UREE; UREE APO form (dimer), structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 2.08A {Helicobacter pylori} PDB: 3la0_A 3nxz_A 3ny0_A
Probab=4.77 E-value=1.7e+02 Score=12.71 Aligned_cols=10 Identities=50% Similarity=0.760 Sum_probs=8.3
Q ss_pred CEEEECCCCC
Q ss_conf 9775414898
Q 537021.9.peg.8 1 MIITNISGNH 10 (41)
Q Consensus 1 miitnisgnh 10 (41)
||++.|.||-
T Consensus 1 MIi~~IlGNv 10 (170)
T 3l9z_A 1 MIIERLVGNL 10 (170)
T ss_dssp CEECSCCCBS
T ss_pred CEEEEECCCC
T ss_conf 9478830673
No 3
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=4.57 E-value=2.2e+02 Score=12.13 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 86310689998318986553068998875129
Q 537021.9.peg.8 10 HPFNAKIRIFSFVPPKASHHKSIFFSFVNISC 41 (41)
Q Consensus 10 hpfnakirifsfvppkashhksiffsfvnisc 41 (41)
-.|+..|+|- +|+.....--++|+|-++||
T Consensus 90 P~w~eeiKi~--LP~~~~~~~HLlFtf~H~s~ 119 (220)
T 3l4c_A 90 PRWFETVKVA--IPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CCCCEEEEEE--ECTTSSTTEEEEEEEEECCC
T ss_pred CCCCEEEEEE--CCCCCCCCEEEEEEEEEECC
T ss_conf 9975548995--48533788289999997425
No 4
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=4.52 E-value=2.2e+02 Score=12.12 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=11.0
Q ss_pred CCCCCEEEEEEEECCCCC
Q ss_conf 986310689998318986
Q 537021.9.peg.8 9 NHPFNAKIRIFSFVPPKA 26 (41)
Q Consensus 9 nhpfnakirifsfvppka 26 (41)
..+|+|.|--|++..|..
T Consensus 108 g~~F~v~Ip~F~L~~P~~ 125 (127)
T 2f1e_A 108 GTEFIAPIAAFVLSVPRT 125 (127)
T ss_dssp CCEEEEEEEEEEEC----
T ss_pred CCEEEEECCCEECCCCCC
T ss_conf 999999887758689874
No 5
>2bih_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Probab=4.31 E-value=2.3e+02 Score=12.03 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=8.8
Q ss_pred CCCCCCCCEEEE
Q ss_conf 148986310689
Q 537021.9.peg.8 6 ISGNHPFNAKIR 17 (41)
Q Consensus 6 isgnhpfnakir 17 (41)
+.|.|||||.-.
T Consensus 49 ltg~~P~NaE~P 60 (474)
T 2bih_A 49 LTGSHPFNSEPP 60 (474)
T ss_dssp SSTTSSCEEECC
T ss_pred ECCCCCCCCCCC
T ss_conf 658898988979
No 6
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase (small chain); lyase(carbon-carbon); HET: CAP; 2.20A {Synechococcus elongatus pcc 6301} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=4.23 E-value=50 Score=15.17 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=7.7
Q ss_pred CEEEEEEEECCCC
Q ss_conf 1068999831898
Q 537021.9.peg.8 13 NAKIRIFSFVPPK 25 (41)
Q Consensus 13 nakirifsfvppk 25 (41)
|.-||+..|-|-+
T Consensus 83 ~~YVRLiG~D~~~ 95 (109)
T 1rbl_M 83 DCYIRVAGFDNIK 95 (109)
T ss_dssp TSEEEEEEEETTT
T ss_pred CCEEEEEEEECCC
T ss_conf 7669899996887
No 7
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=4.05 E-value=2.4e+02 Score=11.93 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=13.6
Q ss_pred CCCCEEEEEEEECCCCCCCC
Q ss_conf 86310689998318986553
Q 537021.9.peg.8 10 HPFNAKIRIFSFVPPKASHH 29 (41)
Q Consensus 10 hpfnakirifsfvppkashh 29 (41)
+|=-.-+|+++|+|.|++..
T Consensus 306 ~~GI~~~~v~~~~p~~~~~~ 325 (333)
T 2im9_A 306 SPTIKGINIQVVLPEKPVSN 325 (333)
T ss_dssp CSSCCEEEEEEECCSSCC--
T ss_pred CCCEEEEEEEEECCCCCCCC
T ss_conf 99779999898515886667
No 8
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=3.81 E-value=1.2e+02 Score=13.42 Aligned_cols=10 Identities=60% Similarity=0.876 Sum_probs=0.0
Q ss_pred ECCCCCCCCE
Q ss_conf 3189865530
Q 537021.9.peg.8 21 FVPPKASHHK 30 (41)
Q Consensus 21 fvppkashhk 30 (41)
.||..||.||
T Consensus 2 lvpdaaskhk 11 (26)
T 1rdt_E 2 LVPDAASKHK 11 (26)
T ss_pred CCCHHHHHHH
T ss_conf 7730778889
No 9
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=3.81 E-value=2.3e+02 Score=12.03 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=0.0
Q ss_pred CCCCEEEEEE
Q ss_conf 8631068999
Q 537021.9.peg.8 10 HPFNAKIRIF 19 (41)
Q Consensus 10 hpfnakirif 19 (41)
|-||.|++||
T Consensus 83 ~~~NGK~~i~ 92 (102)
T 2pp6_A 83 RRFNGKPQLT 92 (102)
T ss_dssp EEETTEEEEE
T ss_pred EEECCCEEEE
T ss_conf 8558968999
No 10
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=3.71 E-value=2.2e+02 Score=12.12 Aligned_cols=6 Identities=83% Similarity=1.508 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 489863
Q 537021.9.peg.8 7 SGNHPF 12 (41)
Q Consensus 7 sgnhpf 12 (41)
|.+|||
T Consensus 37 s~~HPf 42 (73)
T 1nkw_Y 37 SGVHPF 42 (73)
T ss_pred CCCCCC
T ss_conf 888771
Done!