HHsearch alignment for GI: peg_816 and conserved domain: COG2003

>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair].
Probab=100.00  E-value=2.4e-39  Score=253.07  Aligned_cols=97  Identities=42%  Similarity=0.651  Sum_probs=95.9

Q ss_pred             CCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             95156887734899854046358932999999999731968999955689898814778999999999997649889979
Q 537021.9.peg.8    1 LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNIITTLNPLNIIVHDH   80 (97)
Q Consensus         1 l~Ld~~~~li~~e~i~~Gt~~~~~v~~r~i~~~al~~~A~~vilaHNHPsG~~~PS~~Di~~T~~l~~a~~~l~i~llDH   80 (97)
T Consensus       128 L~Ld~qnrlI~~e~lf~GTi~~s~V~PREI~k~Al~~nAaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDH  207 (224)
T COG2003         128 LYLDSQNRLIATETLFIGTLNVSEVHPREIFKEALKYNAAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDH  207 (224)
T ss_pred             HHHCCCCCEEEEEEEEEEECCCCEECHHHHHHHHHHHCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             99547684331003775201450433799999999822135530015899999857788999999999987429331004


Q ss_pred             EEECCCCEEEHHHCCCC
Q ss_conf             99859959974525899
Q 537021.9.peg.8   81 IIIGKDAFVSFKGLRII   97 (97)
Q Consensus        81 iIv~~~~~~S~re~gll   97 (97)
T Consensus       208 iIig~~~y~Sf~E~gll  224 (224)
T COG2003         208 IIIGEGLYISFAERGLL  224 (224)
T ss_pred             EEECCCCEEEHHHHCCC
T ss_conf             78648858747761269