BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.816_1
         (97 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.816_1 
          Length = 97

 Score =  194 bits (493), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI 60
          LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI
Sbjct: 1  LFLDKHNILIADEVQSRGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADI 60

Query: 61 NMTQNIITTLNPLNIIVHDHIIIGKDAFVSFKGLRII 97
          NMTQNIITTLNPLNIIVHDHIIIGKDAFVSFKGLRII
Sbjct: 61 NMTQNIITTLNPLNIIVHDHIIIGKDAFVSFKGLRII 97


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 199

 Score = 25.0 bits (53), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 1  LFLDKHNILIADEVQSRGTIDHVPVYIREI 30
          LFL KH + +   + S+G I+    YIR +
Sbjct: 6  LFLIKHKLKLHKNIMSKGKINESFWYIRTL 35


>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 347

 Score = 22.3 bits (46), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 57  DADINMTQNIITTLNPLNIIVHDHIIIGKDAFVSFKGL 94
           +  I    +I ++L   ++I+H  + IG D F   +G+
Sbjct: 170 NCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGV 207


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 293

 Score = 20.8 bits (42), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 17 RGTIDHVPVYIREIVQRCLELSATSIILVHNHPSGNPNPSDADINMTQNI 66
          RG I+     I  I +   + SAT++I+  + P G+    +A     Q +
Sbjct: 44 RGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93


>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 20.4 bits (41), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 45  VHNHPSGNPNPSDA 58
           V  HP  +P P D+
Sbjct: 365 VQYHPESSPGPQDS 378


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.142    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,847
Number of Sequences: 1233
Number of extensions: 2285
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 328,796
effective HSP length: 61
effective length of query: 36
effective length of database: 253,583
effective search space:  9128988
effective search space used:  9128988
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)