HHsearch alignment for GI: peg_817 and conserved domain: COG2003

>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair].
Probab=100.00  E-value=1.2e-36  Score=257.42  Aligned_cols=130  Identities=21%  Similarity=0.280  Sum_probs=126.7

Q ss_pred             CCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHH
Q ss_conf             63001650199999823922189899999997337998988999999997379978985099789973789889999997
Q 537021.9.peg.8   16 LDYIGHHNRLRDRFLQKGENALAYYEILELILFRLIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALEL   95 (148)
Q Consensus        16 ~~~~ghr~R~RErll~~G~~~LsD~ELLallL~~g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l   95 (148)
T Consensus         3 i~~~~~~~rPRErll~~G~~~Lsd~ELLailLrtG~~~~~~~~la~~lL~~fg~L~~l~~a~~~el~~v~GiG~aka~~l   82 (224)
T COG2003           3 IKDNPENERPRERLLKLGAEALSDAELLAILLRTGTKGESVLDLAKELLQEFGSLAELLKASVEELSSVKGIGLAKAIQI   82 (224)
T ss_pred             CCCCCCCCCHHHHHHHHCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCHHHHHHH
T ss_conf             44465310618999872845346689999999628999878999999999732588887379999951788338899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf             54999999999987640677889899999999984597800025212102
Q 537021.9.peg.8   96 KLVSVASQRILKANWSIKKFLTPGQPCLISVERHYPMKNANNFAYCFSIN  145 (148)
Q Consensus        96 ~a~~El~rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~~~~E~F~vLF~~N  145 (148)
T Consensus        83 ~a~~El~~R~~~~~~~~~~~i~sp~~~~~~l~~~l~~~~~E~f~vL~Ld~  132 (224)
T COG2003          83 KAAIELGKRILAERLREGVVITSPEAVAEYLRAELGGEEREHFVVLYLDS  132 (224)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999987505775489999999999986134889999999547