HHsearch alignment for GI: peg_817 and conserved domain: TIGR01259
>TIGR01259 comE comEA protein; InterPro: IPR004787 The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable . ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=94.22 E-value=0.032 Score=35.18 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=26.5
Q ss_pred CHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 97898509978997378988999999754999
Q 537021.9.peg.8 69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSV 100 (148)
Q Consensus 69 sL~~ll~as~~eL~~i~GIG~aka~~l~a~~E 100 (148)
T Consensus 62 ~~VnlN~As~~EL~~l~GiGP~kA~aIi~YRe 93 (124)
T TIGR01259 62 AAVNLNKASLEELQALPGIGPAKAKAIIEYRE 93 (124)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 01344067899986369998133799999998