HHsearch alignment for GI: peg_817 and conserved domain: TIGR01259

>TIGR01259 comE comEA protein; InterPro: IPR004787 The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable . ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=94.22  E-value=0.032  Score=35.18  Aligned_cols=32  Identities=22%  Similarity=0.094  Sum_probs=26.5

Q ss_pred             CHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             97898509978997378988999999754999
Q 537021.9.peg.8   69 TLGGVFGAPLHLLQEINRIGKRVALELKLVSV  100 (148)
Q Consensus        69 sL~~ll~as~~eL~~i~GIG~aka~~l~a~~E  100 (148)
T Consensus        62 ~~VnlN~As~~EL~~l~GiGP~kA~aIi~YRe   93 (124)
T TIGR01259        62 AAVNLNKASLEELQALPGIGPAKAKAIIEYRE   93 (124)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             01344067899986369998133799999998