HHsearch alignment for GI: peg_817 and conserved domain: cd00056
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
Probab=96.21 E-value=0.0029 Score=41.91 Aligned_cols=113 Identities=21% Similarity=0.144 Sum_probs=72.0
Q ss_pred HHHHHHHH--HCCHHHCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 01999998--23922189899999997337998--988999999997379978985099789973789889999997549
Q 537021.9.peg.8 23 NRLRDRFL--QKGENALAYYEILELILFRLIPR--KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV 98 (148)
Q Consensus 23 ~R~RErll--~~G~~~LsD~ELLallL~~g~~~--~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~ 98 (148)
T Consensus 23 ~~l~~~~~pt~~~l~~~~~~~l~~~~~~~gy~~Ka~~i~~~a~~i~~~~~~~~~~~~~~~~~L~~l~GIG~~TA~~vl~~ 102 (158)
T cd00056 23 ERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVLDDPDAREELLALPGVGRKTANVVLLF 102 (158)
T ss_pred HHHHHHCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99998549989999809999999997335689999999998888898608957898889999875898289999999999
Q ss_pred HHHH----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999----------99999876406778898999999999845978000
Q 537021.9.peg.8 99 SVAS----------QRILKANWSIKKFLTPGQPCLISVERHYPMKNANN 137 (148)
Q Consensus 99 ~El~----------rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~~~~E~ 137 (148)
T Consensus 103 -~~~~~~~~vD~~v~R~~~r-l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 149 (158)
T cd00056 103 -ALGPDAFPVDTHVRRVLKR-LGLIPKKKTPEELEELLEELLPKPYWGE 149 (158)
T ss_pred -HCCCCCCCCCHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf -8799836225999999999-5787789999999999998589201999