HHsearch alignment for GI: peg_817 and conserved domain: cd00056

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
Probab=96.21  E-value=0.0029  Score=41.91  Aligned_cols=113  Identities=21%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             HHHHHHHH--HCCHHHCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             01999998--23922189899999997337998--988999999997379978985099789973789889999997549
Q 537021.9.peg.8   23 NRLRDRFL--QKGENALAYYEILELILFRLIPR--KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV   98 (148)
Q Consensus        23 ~R~RErll--~~G~~~LsD~ELLallL~~g~~~--~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~   98 (148)
T Consensus        23 ~~l~~~~~pt~~~l~~~~~~~l~~~~~~~gy~~Ka~~i~~~a~~i~~~~~~~~~~~~~~~~~L~~l~GIG~~TA~~vl~~  102 (158)
T cd00056          23 ERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVLDDPDAREELLALPGVGRKTANVVLLF  102 (158)
T ss_pred             HHHHHHCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99998549989999809999999997335689999999998888898608957898889999875898289999999999


Q ss_pred             HHHH----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999----------99999876406778898999999999845978000
Q 537021.9.peg.8   99 SVAS----------QRILKANWSIKKFLTPGQPCLISVERHYPMKNANN  137 (148)
Q Consensus        99 ~El~----------rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~~~~E~  137 (148)
T Consensus       103 -~~~~~~~~vD~~v~R~~~r-l~~~~~~~~~~~~~~~~~~~~p~~~~~~  149 (158)
T cd00056         103 -ALGPDAFPVDTHVRRVLKR-LGLIPKKKTPEELEELLEELLPKPYWGE  149 (158)
T ss_pred             -HCCCCCCCCCHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             -8799836225999999999-5787789999999999998589201999