HHsearch alignment for GI: peg_817 and conserved domain: pfam00730
>pfam00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein. This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases. The methyl-CPG binding protein MBD4 also contains a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.
Probab=95.06 E-value=0.029 Score=35.43 Aligned_cols=96 Identities=18% Similarity=0.064 Sum_probs=60.4
Q ss_pred HHHCCHHHHHHHHHHCCC---CCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH----------HH
Q ss_conf 221898999999973379---98988999999997379978985099789973789889999997549----------99
Q 537021.9.peg.8 34 ENALAYYEILELILFRLI---PRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLV----------SV 100 (148)
Q Consensus 34 ~~~LsD~ELLallL~~g~---~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~----------~E 100 (148)
T Consensus 33 l~~~~~~~l~~~i~~~G~~~~Ka~~I~~~a~~~~~~~~~~~~~~~~~~~~L~~l~GIG~~ta~~~l~~~~~~~d~~~~~D 112 (144)
T pfam00730 33 LAEADEEELRELIKGLGFYRRKAKYIKELARILVEGYLGLVPLDLEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVD 112 (144)
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCC
T ss_conf 98599999999987089769999999999988898628978861156999860889769999999999869998732644
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999998764067788989999999998
Q 537021.9.peg.8 101 ASQRILKANWSIKKFLTPGQPCLISVERH 129 (148)
Q Consensus 101 l~rR~~~~~~~~~~~l~s~~~v~~yl~~~ 129 (148)
T Consensus 113 ~~v~r~~~rl~~~~~~~~~~~~~~~l~~~ 141 (144)
T pfam00730 113 THVRRVAKRLGLIKEKPTPEEVERELEEL 141 (144)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999977998999999999998713