HHsearch alignment of GI: peg_817 and MMDB domain: 1cuk_A_66-144

>1cuk_A (A:66-144) RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli}

Probab=91.91  E-value=0.29  Score=28.53  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             HHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999973799---789850997899737898899999975499999999
Q 537021.9.peg.8   58 SIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRI  105 (148)
Q Consensus        58 ~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~  105 (148)
                      -+|-.+|..|+-   ...+.+.+.+.|+++||||+..|-+|.  .||-.++
T Consensus        19 k~Al~iLs~~~~~el~~aI~~~D~~~L~~ipGIG~KtAerii--~eLk~K~   67 (79)
T 1cuk_A           19 KLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLI--VEMKDRF   67 (79)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHH--HHHHHHG
T ss_pred             HHHHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHH--HHHHHHH
T ss_conf             999999757999999999992899998419998899999999--9999888