HHsearch alignment of GI: peg_817 and MMDB domain: 1ixr_A_
>1ixr_A (A:) Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus}
Probab=95.98 E-value=0.01 Score=37.89 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98999999973379989889999999973799---789850997899737898899999975499999999998764067
Q 537021.9.peg.8 38 AYYEILELILFRLIPRKDTKSIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRILKANWSIKK 114 (148)
Q Consensus 38 sD~ELLallL~~g~~~~~~~~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~~~~~~~~~~ 114 (148)
.+-|+-..++. .++-- --.|..+|++|+. ...+.++|+++|+++||||+..|-+|.. ||-..+.........
T Consensus 66 ~er~~F~~L~~--V~GIG-pk~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGIG~KtA~rIi~--eLk~k~~~~~~~~~~ 140 (191)
T 1ixr_A 66 ENLALFELLLS--VSGVG-PKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIAL--ELKGKVPPHLLAGEK 140 (191)
T ss_dssp HHHHHHHHHHS--SSCCC-HHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHH--HHTTTSCSCC-----
T ss_pred HHHHHHHHHHC--CCCCC-HHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHH--HHHHHCCCCCCCCCC
T ss_conf 99999999857--58847-78899998559999999999828999851388845688999999--998642521001123
Q ss_pred CCCCH-HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 78898-999999999845978000252
Q 537021.9.peg.8 115 FLTPG-QPCLISVERHYPMKNANNFAY 140 (148)
Q Consensus 115 ~l~s~-~~v~~yl~~~l~~~~~E~F~v 140 (148)
..+++ +++..-| ..||+.+.|.-.+
T Consensus 141 ~~~~~~~e~~~aL-~~LGy~~~ea~~a 166 (191)
T 1ixr_A 141 VESEAAEEAVMAL-AALGFKEAQARAV 166 (191)
T ss_dssp ---------------------------
T ss_pred CCCCCHHHHHHHH-HHCCCCHHHHHHH
T ss_conf 3555689999999-9869999999999