HHsearch alignment of GI: peg_817 and MMDB domain: 1wcn_A_

>1wcn_A (A:) Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=93.72  E-value=0.16  Score=30.24  Aligned_cols=41  Identities=22%  Similarity=0.211  Sum_probs=35.4

Q ss_pred             HHHHHHHHH-CCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999973-79978985099789973789889999997549
Q 537021.9.peg.8   58 SIAKALLKR-FATLGGVFGAPLHLLQEINRIGKRVALELKLV   98 (148)
Q Consensus        58 ~lA~~lL~~-fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~   98 (148)
                      ..|+.|-+. |.++..|..+++++|..|+|||..+|..|...
T Consensus        18 ~~a~~L~~aGi~TvedLa~a~~~eL~~i~Gi~~~~A~~ii~~   59 (70)
T 1wcn_A           18 DLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMA   59 (70)
T ss_dssp             HHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHCHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999996997599998729999976517999999999999