HHsearch alignment of GI: peg_817 and MMDB domain: 2a1j_A_

>2a1j_A (A:) DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens}

Probab=95.80  E-value=0.013  Score=37.20  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=36.6

Q ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             79989889999999973799789850997899737898899999975499
Q 537021.9.peg.8   50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS   99 (148)
Q Consensus        50 g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~   99 (148)
                      +.|+... ..|+.|+.+|||+.++.+||.+||.+|+| |+.+|-.|.-.+
T Consensus         8 ~IpgVG~-~~a~~Ll~~f~Si~~i~~As~eeL~~i~g-g~~~A~~i~~~l   55 (63)
T 2a1j_A            8 KMPGVNA-KNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFI   55 (63)
T ss_dssp             TSTTCCH-HHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             CCCCCCH-HHHHHHHHHHCCHHHHHHCCHHHHHHCCC-CHHHHHHHHHHH
T ss_conf             1999899-99999999807899998699999977859-689999999998