HHsearch results for GI: peg_817 and protein with PDBid: 2a1j_B

>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5

Probab=97.52  E-value=0.0001  Score=49.85  Aligned_cols=48  Identities=23%  Similarity=0.200  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             9989889999999973799789850997899737898899999975499
Q 537021.9.peg.8   51 IPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS   99 (148)
Q Consensus        51 ~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~   99 (148)
                      .|+ =-...|+.|+++|||+..+..|+.++|.+|+|||+.+|..|...+
T Consensus        37 I~g-IGk~~A~~L~~~F~Si~~l~~As~eeL~~i~GIG~~~A~~I~~~f   84 (91)
T 2a1j_B           37 VKS-VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL   84 (91)
T ss_dssp             STT-CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred             CCC-CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             888-599999999999588298999899975577996999999999998