HHSEARCH alignment of GI: peg_817 and SCOP domain: d1cuka2

Alignment

Probab=91.15  E-value=0.16  Score=27.70  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=41.1

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999973379989889999999973799---789850997899737898899999975499999999
Q 537021.9.peg.8   40 YEILELILFRLIPRKDTKSIAKALLKRFAT---LGGVFGAPLHLLQEINRIGKRVALELKLVSVASQRI  105 (148)
Q Consensus        40 ~ELLallL~~g~~~~~~~~lA~~lL~~fGs---L~~ll~as~~eL~~i~GIG~aka~~l~a~~El~rR~  105 (148)
                      .++...++.  .++--. -+|-.+|..|+.   ...+.+-+...|++++|||+..|..|.  .||.-++
T Consensus         5 r~~F~~Li~--V~GIGp-K~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi--~eLk~K~   68 (78)
T d1cuka2           5 RTLFKELIK--TNGVGP-KLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLI--VEMKDRF   68 (78)
T ss_dssp             HHHHHHHHH--SSSCCH-HHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHH--HHHHHHG
T ss_pred             HHHHHHHHC--CCCCCH-HHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH--HHHHHHH
T ss_conf             999999876--688019-999999984899999999980688871229997899999999--9999999

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: DNA helicase RuvA subunit, middle domain
domain: DNA helicase RuvA subunit, middle domain
species: Escherichia coli [TaxId: 562]