HHSEARCH alignment of GI: peg_817 and SCOP domain: d1orna_

Alignment

Probab=94.75  E-value=0.017  Score=34.01  Aligned_cols=94  Identities=13%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             HHCCHHHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH---------HH
Q ss_conf             2189899999997337998---98899999999737997898509978997378988999999754999---------99
Q 537021.9.peg.8   35 NALAYYEILELILFRLIPR---KDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVSV---------AS  102 (148)
Q Consensus        35 ~~LsD~ELLallL~~g~~~---~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~E---------l~  102 (148)
                      ...+..|+++++-+.|..+   .+.+..|+.+.++|||   -.-.+.++|.++||||+..|..+.+..-         =.
T Consensus        66 a~~~~~e~~~~i~~~g~y~~ka~~l~~~a~~i~~~~~g---~vp~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv  142 (214)
T d1orna_          66 IAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG---EVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHV  142 (214)
T ss_dssp             HSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT---SCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHH
T ss_conf             20557776533210324108889999985547998399---788889999718686632677899987058755555238


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf             999998764067788989999999998459
Q 537021.9.peg.8  103 QRILKANWSIKKFLTPGQPCLISVERHYPM  132 (148)
Q Consensus       103 rR~~~~~~~~~~~l~s~~~v~~yl~~~l~~  132 (148)
                      +|+.. ++.--..-+++..+...++..+..
T Consensus       143 ~RV~~-Rlg~~~~~~~~~~~~~~l~~~~p~  171 (214)
T d1orna_         143 ERVSK-RLGFCRWDDSVLEVEKTLMKIIPK  171 (214)
T ss_dssp             HHHHH-HHTSSCTTCCHHHHHHHHHHHSCG
T ss_pred             HHHHH-HHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             88999-988740355104445556530765

SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]