HHSEARCH alignment of GI: peg_817 and SCOP domain: d2a1jb1

Alignment

Probab=97.55  E-value=3.7e-05  Score=51.16  Aligned_cols=49  Identities=22%  Similarity=0.196  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             79989889999999973799789850997899737898899999975499
Q 537021.9.peg.8   50 LIPRKDTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVALELKLVS   99 (148)
Q Consensus        50 g~~~~~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~~l~a~~   99 (148)
                      +.++- -...|+.|+++|||+.++.+|+.++|..|+|||+.+|..|.-.+
T Consensus        23 ~I~gI-g~~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f   71 (78)
T d2a1jb1          23 TVKSV-NKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL   71 (78)
T ss_dssp             TSTTC-CHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred             CCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89975-99999999999398199885527888875053399999999998

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA excision repair protein ERCC-1
species: Human (Homo sapiens) [TaxId: 9606]