HHSEARCH alignment of GI: peg_817 and SCOP domain: d2abka_

Alignment
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=94.23  E-value=0.018  Score=33.83  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHC--CHHHCCH---HHHHHHHHHCCCCCC---CHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCCCCHHHHH
Q ss_conf             50199999823--9221898---999999973379989---889999999973799789850997899737898899999
Q 537021.9.peg.8   22 HNRLRDRFLQK--GENALAY---YEILELILFRLIPRK---DTKSIAKALLKRFATLGGVFGAPLHLLQEINRIGKRVAL   93 (148)
Q Consensus        22 r~R~RErll~~--G~~~LsD---~ELLallL~~g~~~~---~~~~lA~~lL~~fGsL~~ll~as~~eL~~i~GIG~aka~   93 (148)
                      -.+--++|.+.  .+++++.   .|+.+++-+.|..+.   ..+.+|+.+.++|||   .+--+.++|.++||||+..|.
T Consensus        47 v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g---~~p~~~~~L~~LpGVG~~TA~  123 (211)
T d2abka_          47 VNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG---EVPEDRAALEALPGVGRKTAN  123 (211)
T ss_dssp             HHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT---SCCSCHHHHHHSTTCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCHHHHH
T ss_conf             99999988874147278876557676777777544115788999998889987148---604779999999860517899


Q ss_pred             HHHHHHH---------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             9754999---------9999999876406778898999999999845
Q 537021.9.peg.8   94 ELKLVSV---------ASQRILKANWSIKKFLTPGQPCLISVERHYP  131 (148)
Q Consensus        94 ~l~a~~E---------l~rR~~~~~~~~~~~l~s~~~v~~yl~~~l~  131 (148)
                      -|.+..-         =.+|+..- +.- ..-.++.++...+...+.
T Consensus       124 ~Il~~a~~~p~~~vD~nv~Rv~~R-~g~-~~~~~~~~~~~~~~~~~p  168 (211)
T d2abka_         124 VVLNTAFGWPTIAVDTHIFRVCNR-TQF-APGKNVEQVEEKLLKVVP  168 (211)
T ss_dssp             HHHHHHHCCCCCCCCHHHHHHHHH-HCS-SCCSSHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHH-HCC-CCCCHHHHHHHHHHHCCC
T ss_conf             999998568032256799999997-066-754204678888860486


SCOP domain information

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]