HHSEARCH alignment of GI: peg_817 and SCOP domain: d2i1qa1

Alignment

Probab=96.89  E-value=0.00096  Score=42.06  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             HHHHHHHHH-CCCHHHHHCCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999999973-7997898509978997378988999999754
Q 537021.9.peg.8   58 SIAKALLKR-FATLGGVFGAPLHLLQEINRIGKRVALELKL   97 (148)
Q Consensus        58 ~lA~~lL~~-fGsL~~ll~as~~eL~~i~GIG~aka~~l~a   97 (148)
                      ..|+.|.+. |+|+..|.+|++++|.+|+|||+.+|.+|..
T Consensus        10 ~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~   50 (60)
T d2i1qa1          10 STAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIM   50 (60)
T ss_dssp             HHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             99999998369999999859999998778989999999999

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]